Query 015501
Match_columns 405
No_of_seqs 175 out of 1399
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:54:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00112 malate dehydrogenase 100.0 1.2E-96 3E-101 750.7 38.9 400 4-404 3-408 (444)
2 TIGR01757 Malate-DH_plant mala 100.0 1.2E-82 2.6E-87 639.3 35.8 348 55-404 2-352 (387)
3 PRK05442 malate dehydrogenase; 100.0 1.9E-69 4.1E-74 535.9 31.5 309 93-404 1-310 (326)
4 TIGR01759 MalateDH-SF1 malate 100.0 4.9E-69 1.1E-73 532.3 32.7 309 94-404 1-311 (323)
5 COG0039 Mdh Malate/lactate deh 100.0 9.6E-69 2.1E-73 522.4 30.5 293 97-404 1-295 (313)
6 cd05295 MDH_like Malate dehydr 100.0 6.8E-68 1.5E-72 539.5 32.9 312 85-404 111-438 (452)
7 KOG1496 Malate dehydrogenase [ 100.0 1.8E-68 4E-73 491.8 23.2 310 93-404 1-314 (332)
8 cd05290 LDH_3 A subgroup of L- 100.0 4.1E-66 8.9E-71 508.7 31.5 290 98-404 1-297 (307)
9 cd00704 MDH Malate dehydrogena 100.0 2.9E-66 6.2E-71 513.1 29.7 303 97-404 1-310 (323)
10 cd01338 MDH_choloroplast_like 100.0 8.5E-66 1.8E-70 509.5 31.8 307 95-404 1-308 (322)
11 TIGR01758 MDH_euk_cyt malate d 100.0 5.5E-65 1.2E-69 504.2 30.2 305 98-404 1-310 (324)
12 TIGR01771 L-LDH-NAD L-lactate 100.0 1.1E-64 2.3E-69 497.4 29.7 287 101-404 1-292 (299)
13 cd05293 LDH_1 A subgroup of L- 100.0 8.8E-64 1.9E-68 493.4 32.0 293 95-404 2-301 (312)
14 PLN02602 lactate dehydrogenase 100.0 4.9E-64 1.1E-68 501.0 30.3 291 97-404 38-336 (350)
15 PRK00066 ldh L-lactate dehydro 100.0 1.2E-63 2.7E-68 493.3 31.9 293 94-404 4-301 (315)
16 cd01336 MDH_cytoplasmic_cytoso 100.0 1.2E-63 2.6E-68 495.2 30.8 308 95-404 1-312 (325)
17 TIGR01756 LDH_protist lactate 100.0 1.2E-63 2.6E-68 491.7 29.4 289 113-404 2-296 (313)
18 PLN00135 malate dehydrogenase 100.0 3.2E-63 6.8E-68 487.6 29.7 286 116-404 2-292 (309)
19 cd05291 HicDH_like L-2-hydroxy 100.0 7E-62 1.5E-66 479.5 32.5 291 97-404 1-295 (306)
20 cd00300 LDH_like L-lactate deh 100.0 2.4E-61 5.1E-66 474.4 31.5 288 99-404 1-290 (300)
21 KOG1495 Lactate dehydrogenase 100.0 5.3E-61 1.1E-65 449.1 26.3 292 96-404 20-318 (332)
22 cd05292 LDH_2 A subgroup of L- 100.0 8.7E-59 1.9E-63 457.8 31.6 290 97-404 1-296 (308)
23 PTZ00117 malate dehydrogenase; 100.0 2E-58 4.4E-63 457.1 33.3 292 95-404 4-302 (319)
24 cd05294 LDH-like_MDH_nadp A la 100.0 2.8E-58 6E-63 454.3 30.3 294 97-404 1-297 (309)
25 PTZ00082 L-lactate dehydrogena 100.0 1.5E-57 3.2E-62 450.9 33.3 294 93-404 3-308 (321)
26 TIGR01763 MalateDH_bact malate 100.0 1.5E-57 3.3E-62 448.1 31.3 287 97-404 2-293 (305)
27 cd01337 MDH_glyoxysomal_mitoch 100.0 2.2E-57 4.7E-62 446.5 27.4 280 97-404 1-294 (310)
28 TIGR01772 MDH_euk_gproteo mala 100.0 4.7E-57 1E-61 444.7 27.9 280 98-404 1-294 (312)
29 PRK06223 malate dehydrogenase; 100.0 8.3E-56 1.8E-60 436.1 31.7 289 96-404 2-294 (307)
30 cd01339 LDH-like_MDH L-lactate 100.0 7.4E-55 1.6E-59 428.4 31.5 286 99-404 1-290 (300)
31 PTZ00325 malate dehydrogenase; 100.0 3.1E-54 6.7E-59 426.0 29.6 285 92-404 4-301 (321)
32 PRK05086 malate dehydrogenase; 100.0 1.6E-52 3.5E-57 413.5 28.6 280 97-404 1-294 (312)
33 PLN00106 malate dehydrogenase 100.0 3E-52 6.5E-57 412.2 29.3 283 95-404 17-312 (323)
34 cd00650 LDH_MDH_like NAD-depen 100.0 1.3E-50 2.8E-55 391.2 27.8 251 99-404 1-253 (263)
35 KOG1494 NAD-dependent malate d 100.0 7.8E-40 1.7E-44 308.2 18.2 287 94-404 26-323 (345)
36 PF02866 Ldh_1_C: lactate/mala 100.0 1.2E-33 2.6E-38 257.0 15.7 153 248-404 1-158 (174)
37 cd05197 GH4_glycoside_hydrolas 100.0 3.8E-32 8.2E-37 278.2 26.6 284 97-403 1-378 (425)
38 PRK15076 alpha-galactosidase; 100.0 2.9E-31 6.2E-36 272.5 28.7 282 96-403 1-372 (431)
39 cd05296 GH4_P_beta_glucosidase 100.0 1.7E-30 3.7E-35 265.7 28.0 285 97-404 1-368 (419)
40 PF00056 Ldh_1_N: lactate/mala 100.0 6.5E-32 1.4E-36 237.7 14.5 141 97-245 1-141 (141)
41 cd05298 GH4_GlvA_pagL_like Gly 100.0 2.4E-28 5.2E-33 250.7 29.5 279 97-403 1-381 (437)
42 cd05297 GH4_alpha_glucosidase_ 100.0 2.9E-28 6.2E-33 250.3 28.0 283 97-403 1-375 (423)
43 COG1486 CelF Alpha-galactosida 100.0 5.2E-27 1.1E-31 236.9 23.4 286 95-403 2-384 (442)
44 PF02056 Glyco_hydro_4: Family 99.8 4.2E-18 9E-23 155.4 14.0 156 98-265 1-183 (183)
45 PF02737 3HCDH_N: 3-hydroxyacy 98.4 1.3E-06 2.8E-11 80.0 8.9 121 98-246 1-135 (180)
46 PRK07819 3-hydroxybutyryl-CoA 98.3 3E-06 6.6E-11 83.1 10.2 107 93-226 2-123 (286)
47 PRK07066 3-hydroxybutyryl-CoA 98.3 6.9E-06 1.5E-10 81.9 11.8 124 96-246 7-140 (321)
48 TIGR01915 npdG NADPH-dependent 98.1 2E-05 4.3E-10 74.2 11.1 103 97-226 1-105 (219)
49 PRK08293 3-hydroxybutyryl-CoA 98.1 1.9E-05 4.1E-10 77.3 11.3 105 96-226 3-122 (287)
50 COG1250 FadB 3-hydroxyacyl-CoA 98.1 1.4E-05 3.1E-10 78.9 9.8 142 96-265 3-176 (307)
51 COG2085 Predicted dinucleotide 98.1 3.4E-05 7.5E-10 71.9 11.5 124 96-255 1-139 (211)
52 PRK05808 3-hydroxybutyryl-CoA 98.1 1.7E-05 3.7E-10 77.4 9.8 123 96-246 3-139 (282)
53 PF01210 NAD_Gly3P_dh_N: NAD-d 98.1 1E-05 2.3E-10 72.2 7.4 113 98-236 1-122 (157)
54 PRK07530 3-hydroxybutyryl-CoA 98.0 4.2E-05 9E-10 75.0 11.2 100 95-219 3-116 (292)
55 PRK06130 3-hydroxybutyryl-CoA 98.0 5E-05 1.1E-09 75.0 11.8 106 94-223 2-116 (311)
56 PRK06035 3-hydroxyacyl-CoA deh 98.0 5.8E-05 1.3E-09 74.0 11.8 103 96-223 3-122 (291)
57 PF03807 F420_oxidored: NADP o 98.0 2E-05 4.4E-10 63.9 6.8 95 98-224 1-96 (96)
58 PLN02545 3-hydroxybutyryl-CoA 97.9 5.2E-05 1.1E-09 74.4 10.4 101 94-219 2-116 (295)
59 TIGR02437 FadB fatty oxidation 97.9 5.4E-05 1.2E-09 83.2 11.2 124 95-246 312-449 (714)
60 PRK11730 fadB multifunctional 97.9 6.7E-05 1.4E-09 82.6 11.5 123 96-246 313-449 (715)
61 TIGR02440 FadJ fatty oxidation 97.9 6.4E-05 1.4E-09 82.5 11.3 124 95-246 303-441 (699)
62 PRK09260 3-hydroxybutyryl-CoA 97.9 0.00011 2.3E-09 72.0 11.4 98 97-218 2-113 (288)
63 TIGR02441 fa_ox_alpha_mit fatt 97.9 6.2E-05 1.3E-09 83.0 10.6 123 95-245 334-470 (737)
64 PRK11154 fadJ multifunctional 97.9 7.8E-05 1.7E-09 82.0 11.2 123 96-246 309-446 (708)
65 PRK08268 3-hydroxy-acyl-CoA de 97.9 7.9E-05 1.7E-09 78.9 10.7 101 93-218 4-118 (507)
66 COG1004 Ugd Predicted UDP-gluc 97.8 0.0005 1.1E-08 69.6 14.8 116 97-229 1-128 (414)
67 PF03721 UDPG_MGDP_dh_N: UDP-g 97.8 0.00012 2.5E-09 67.5 8.8 120 97-236 1-139 (185)
68 TIGR02279 PaaC-3OHAcCoADH 3-hy 97.8 0.00015 3.2E-09 76.7 10.6 106 94-226 3-122 (503)
69 PRK07531 bifunctional 3-hydrox 97.7 0.00025 5.5E-09 74.9 11.5 105 96-226 4-118 (495)
70 PRK12439 NAD(P)H-dependent gly 97.7 0.00038 8.3E-09 70.0 12.2 117 93-236 4-130 (341)
71 PRK00094 gpsA NAD(P)H-dependen 97.7 0.00029 6.2E-09 69.6 10.7 105 96-226 1-109 (325)
72 PF03446 NAD_binding_2: NAD bi 97.6 0.00016 3.4E-09 64.9 7.4 93 96-223 1-95 (163)
73 PRK07680 late competence prote 97.6 0.0005 1.1E-08 66.8 11.1 100 97-226 1-100 (273)
74 PRK06129 3-hydroxyacyl-CoA deh 97.5 0.00077 1.7E-08 66.7 11.2 75 96-180 2-90 (308)
75 COG0240 GpsA Glycerol-3-phosph 97.5 0.001 2.2E-08 66.2 11.4 112 96-237 1-125 (329)
76 PRK14620 NAD(P)H-dependent gly 97.4 0.00093 2E-08 66.5 10.6 104 97-226 1-110 (326)
77 PF11975 Glyco_hydro_4C: Famil 97.4 0.00033 7.1E-09 66.6 6.8 71 325-404 132-202 (232)
78 PLN03209 translocon at the inn 97.4 0.00093 2E-08 71.3 10.8 118 94-222 78-207 (576)
79 PRK12491 pyrroline-5-carboxyla 97.4 0.0014 3E-08 63.9 10.9 69 97-180 3-71 (272)
80 PF10727 Rossmann-like: Rossma 97.4 0.00054 1.2E-08 59.3 6.9 104 95-232 9-116 (127)
81 PRK15057 UDP-glucose 6-dehydro 97.3 0.0051 1.1E-07 63.1 15.0 115 97-228 1-124 (388)
82 KOG2304 3-hydroxyacyl-CoA dehy 97.3 0.00024 5.3E-09 66.7 4.8 109 93-227 8-135 (298)
83 TIGR03026 NDP-sugDHase nucleot 97.3 0.0015 3.2E-08 67.3 11.0 110 97-222 1-120 (411)
84 TIGR03376 glycerol3P_DH glycer 97.3 0.0015 3.2E-08 65.8 10.5 122 98-236 1-137 (342)
85 PTZ00345 glycerol-3-phosphate 97.3 0.0022 4.7E-08 65.2 11.5 107 94-222 9-129 (365)
86 PRK08655 prephenate dehydrogen 97.3 0.0029 6.3E-08 65.8 12.7 93 97-223 1-93 (437)
87 PRK14618 NAD(P)H-dependent gly 97.3 0.0017 3.7E-08 64.7 10.6 76 94-179 2-81 (328)
88 PLN02353 probable UDP-glucose 97.3 0.0016 3.4E-08 68.5 10.6 123 96-228 1-134 (473)
89 PLN02688 pyrroline-5-carboxyla 97.3 0.0019 4.2E-08 62.2 10.5 97 97-225 1-98 (266)
90 COG0345 ProC Pyrroline-5-carbo 97.2 0.0014 3E-08 63.7 8.8 97 96-224 1-97 (266)
91 PRK11880 pyrroline-5-carboxyla 97.2 0.0021 4.6E-08 61.9 10.1 96 96-225 2-97 (267)
92 PRK07634 pyrroline-5-carboxyla 97.2 0.0036 7.7E-08 59.4 11.3 100 95-226 3-103 (245)
93 PRK12921 2-dehydropantoate 2-r 97.2 0.0018 3.9E-08 63.4 9.2 106 97-229 1-109 (305)
94 KOG1502 Flavonol reductase/cin 97.2 0.0029 6.3E-08 63.0 10.6 123 95-227 5-132 (327)
95 PRK07679 pyrroline-5-carboxyla 97.2 0.0037 8E-08 60.9 11.1 98 97-225 4-102 (279)
96 PRK06522 2-dehydropantoate 2-r 97.1 0.0021 4.6E-08 62.8 9.2 104 97-230 1-108 (304)
97 PLN02166 dTDP-glucose 4,6-dehy 97.1 0.0041 8.8E-08 64.7 11.8 113 94-223 118-234 (436)
98 PRK07417 arogenate dehydrogena 97.1 0.0024 5.2E-08 62.3 9.5 65 97-180 1-65 (279)
99 PRK06928 pyrroline-5-carboxyla 97.1 0.0037 7.9E-08 61.0 10.5 100 96-225 1-101 (277)
100 PRK08229 2-dehydropantoate 2-r 97.1 0.0037 7.9E-08 62.4 10.4 105 96-228 2-113 (341)
101 PLN02695 GDP-D-mannose-3',5'-e 97.0 0.0018 3.9E-08 65.7 8.0 128 74-223 2-137 (370)
102 PRK07502 cyclohexadienyl dehyd 97.0 0.008 1.7E-07 59.4 12.2 70 96-181 6-75 (307)
103 CHL00194 ycf39 Ycf39; Provisio 97.0 0.0034 7.3E-08 62.0 9.3 108 97-222 1-109 (317)
104 PF01118 Semialdhyde_dh: Semia 97.0 0.0038 8.2E-08 53.2 8.2 97 98-222 1-97 (121)
105 COG1748 LYS9 Saccharopine dehy 96.9 0.0067 1.5E-07 61.9 10.9 75 96-181 1-77 (389)
106 COG0287 TyrA Prephenate dehydr 96.9 0.0095 2.1E-07 58.4 11.2 120 96-249 3-124 (279)
107 PRK11064 wecC UDP-N-acetyl-D-m 96.9 0.0099 2.1E-07 61.5 11.6 112 96-227 3-125 (415)
108 PLN02206 UDP-glucuronate decar 96.8 0.0088 1.9E-07 62.3 11.0 112 95-223 118-233 (442)
109 PRK14619 NAD(P)H-dependent gly 96.8 0.0056 1.2E-07 60.5 8.8 81 95-224 3-84 (308)
110 PF01073 3Beta_HSD: 3-beta hyd 96.7 0.0031 6.8E-08 61.7 6.6 114 101-226 2-118 (280)
111 PLN02427 UDP-apiose/xylose syn 96.7 0.0031 6.6E-08 64.0 6.8 114 95-223 13-136 (386)
112 PLN02650 dihydroflavonol-4-red 96.7 0.0087 1.9E-07 59.8 9.6 116 96-223 5-128 (351)
113 PRK15182 Vi polysaccharide bio 96.7 0.017 3.7E-07 59.9 11.9 74 95-184 5-88 (425)
114 PTZ00431 pyrroline carboxylate 96.7 0.0087 1.9E-07 57.8 8.9 91 97-226 4-94 (260)
115 COG0300 DltE Short-chain dehyd 96.6 0.027 5.8E-07 54.7 12.2 116 94-223 4-143 (265)
116 PLN00198 anthocyanidin reducta 96.6 0.0092 2E-07 59.2 9.0 114 96-222 9-130 (338)
117 PF13460 NAD_binding_10: NADH( 96.6 0.0032 7E-08 56.5 5.2 90 99-222 1-97 (183)
118 TIGR03589 PseB UDP-N-acetylglu 96.6 0.0086 1.9E-07 59.5 8.5 117 96-222 4-124 (324)
119 PLN02778 3,5-epimerase/4-reduc 96.6 0.021 4.6E-07 56.1 11.2 88 96-211 9-101 (298)
120 PRK11908 NAD-dependent epimera 96.5 0.0048 1.1E-07 61.5 6.4 107 96-223 1-118 (347)
121 PRK15181 Vi polysaccharide bio 96.5 0.028 6.1E-07 56.2 11.8 121 91-222 10-140 (348)
122 PTZ00142 6-phosphogluconate de 96.5 0.013 2.8E-07 61.6 9.7 105 96-229 1-110 (470)
123 PLN02662 cinnamyl-alcohol dehy 96.5 0.011 2.3E-07 58.0 8.6 115 96-222 4-126 (322)
124 PF02719 Polysacc_synt_2: Poly 96.5 0.0035 7.6E-08 61.7 4.9 122 99-229 1-139 (293)
125 TIGR00872 gnd_rel 6-phosphoglu 96.4 0.011 2.5E-07 58.1 8.3 95 97-224 1-95 (298)
126 PRK12549 shikimate 5-dehydroge 96.4 0.011 2.4E-07 58.0 8.2 73 96-179 127-199 (284)
127 PF01488 Shikimate_DH: Shikima 96.4 0.0087 1.9E-07 52.0 6.6 75 95-182 11-85 (135)
128 PRK10675 UDP-galactose-4-epime 96.4 0.031 6.7E-07 55.2 11.3 117 97-223 1-124 (338)
129 TIGR01505 tartro_sem_red 2-hyd 96.4 0.011 2.5E-07 57.7 8.0 63 98-180 1-63 (291)
130 PRK06476 pyrroline-5-carboxyla 96.4 0.021 4.5E-07 54.9 9.6 69 97-180 1-69 (258)
131 PLN02214 cinnamoyl-CoA reducta 96.4 0.018 4E-07 57.6 9.4 110 95-222 9-126 (342)
132 PLN02989 cinnamyl-alcohol dehy 96.3 0.021 4.6E-07 56.2 9.7 117 95-223 4-129 (325)
133 COG2910 Putative NADH-flavin r 96.3 0.017 3.6E-07 53.1 7.9 99 97-223 1-105 (211)
134 PRK14982 acyl-ACP reductase; P 96.3 0.014 3.1E-07 58.7 8.3 98 95-228 154-252 (340)
135 PRK06545 prephenate dehydrogen 96.3 0.047 1E-06 55.3 12.1 68 97-180 1-68 (359)
136 PRK15461 NADH-dependent gamma- 96.3 0.013 2.9E-07 57.6 7.8 64 96-179 1-64 (296)
137 PRK11559 garR tartronate semia 96.3 0.035 7.6E-07 54.3 10.6 65 96-180 2-66 (296)
138 PRK08125 bifunctional UDP-gluc 96.3 0.011 2.5E-07 64.5 7.9 112 93-223 312-432 (660)
139 cd05213 NAD_bind_Glutamyl_tRNA 96.2 0.023 5.1E-07 56.4 9.1 103 95-228 177-279 (311)
140 COG1893 ApbA Ketopantoate redu 96.1 0.015 3.2E-07 57.8 7.3 114 97-236 1-114 (307)
141 PLN02896 cinnamyl-alcohol dehy 96.1 0.067 1.5E-06 53.5 12.1 113 96-223 10-138 (353)
142 PRK05708 2-dehydropantoate 2-r 96.1 0.04 8.6E-07 54.5 10.3 125 96-249 2-128 (305)
143 TIGR01777 yfcH conserved hypot 96.1 0.01 2.2E-07 56.9 5.9 96 99-211 1-100 (292)
144 PLN02583 cinnamoyl-CoA reducta 96.1 0.036 7.8E-07 54.2 9.8 119 96-223 6-128 (297)
145 TIGR03466 HpnA hopanoid-associ 96.1 0.011 2.5E-07 57.6 6.2 111 97-223 1-113 (328)
146 PRK08507 prephenate dehydrogen 96.1 0.047 1E-06 53.0 10.4 66 97-180 1-66 (275)
147 PRK05671 aspartate-semialdehyd 96.1 0.035 7.7E-07 55.8 9.7 74 94-181 2-75 (336)
148 COG2084 MmsB 3-hydroxyisobutyr 96.0 0.038 8.2E-07 54.3 9.5 65 97-180 1-65 (286)
149 PLN02240 UDP-glucose 4-epimera 96.0 0.083 1.8E-06 52.4 12.2 118 95-223 4-132 (352)
150 TIGR02622 CDP_4_6_dhtase CDP-g 96.0 0.022 4.8E-07 56.9 7.9 117 96-223 4-127 (349)
151 PLN02256 arogenate dehydrogena 96.0 0.083 1.8E-06 52.4 11.8 92 95-223 35-128 (304)
152 PLN02986 cinnamyl-alcohol dehy 96.0 0.1 2.2E-06 51.3 12.4 113 96-222 5-127 (322)
153 PRK06194 hypothetical protein; 96.0 0.081 1.8E-06 50.9 11.6 46 96-150 6-51 (287)
154 COG1086 Predicted nucleoside-d 96.0 0.04 8.7E-07 58.4 9.8 126 94-229 248-387 (588)
155 PRK12490 6-phosphogluconate de 96.0 0.023 5.1E-07 55.9 7.8 92 97-223 1-95 (299)
156 PRK12939 short chain dehydroge 96.0 0.083 1.8E-06 49.4 11.2 46 96-150 7-52 (250)
157 TIGR01745 asd_gamma aspartate- 95.9 0.049 1.1E-06 55.3 10.0 72 97-181 1-73 (366)
158 PRK11150 rfaD ADP-L-glycero-D- 95.9 0.058 1.3E-06 52.6 10.3 108 99-223 2-116 (308)
159 PRK09599 6-phosphogluconate de 95.9 0.027 5.8E-07 55.6 7.9 63 97-179 1-66 (301)
160 PRK06598 aspartate-semialdehyd 95.9 0.054 1.2E-06 55.1 10.1 73 96-181 1-74 (369)
161 PRK07102 short chain dehydroge 95.9 0.098 2.1E-06 49.0 11.3 46 96-150 1-46 (243)
162 PRK08267 short chain dehydroge 95.9 0.028 6E-07 53.3 7.6 117 96-224 1-137 (260)
163 PRK07806 short chain dehydroge 95.8 0.086 1.9E-06 49.4 10.7 26 96-121 6-31 (248)
164 PRK13394 3-hydroxybutyrate deh 95.8 0.069 1.5E-06 50.4 10.1 114 96-223 7-144 (262)
165 PLN02383 aspartate semialdehyd 95.8 0.042 9E-07 55.5 8.9 73 95-181 6-78 (344)
166 PRK06728 aspartate-semialdehyd 95.8 0.052 1.1E-06 54.8 9.5 75 94-181 3-77 (347)
167 COG0451 WcaG Nucleoside-diphos 95.8 0.028 6.2E-07 54.4 7.4 100 98-210 2-105 (314)
168 PRK10538 malonic semialdehyde 95.7 0.043 9.4E-07 51.8 8.4 40 97-145 1-40 (248)
169 PLN02712 arogenate dehydrogena 95.7 0.12 2.6E-06 56.7 12.7 93 94-223 50-144 (667)
170 PRK09987 dTDP-4-dehydrorhamnos 95.7 0.027 5.8E-07 55.2 6.9 99 97-222 1-103 (299)
171 PRK12746 short chain dehydroge 95.7 0.19 4.1E-06 47.3 12.5 25 97-121 7-31 (254)
172 PRK13304 L-aspartate dehydroge 95.7 0.067 1.4E-06 51.9 9.5 70 96-181 1-70 (265)
173 PLN02572 UDP-sulfoquinovose sy 95.7 0.043 9.3E-07 57.2 8.7 27 95-121 46-72 (442)
174 PF02558 ApbA: Ketopantoate re 95.6 0.058 1.2E-06 47.1 8.1 121 99-249 1-125 (151)
175 PF01113 DapB_N: Dihydrodipico 95.6 0.037 8E-07 47.4 6.7 74 97-179 1-74 (124)
176 PRK06249 2-dehydropantoate 2-r 95.6 0.025 5.4E-07 56.1 6.4 104 95-227 4-111 (313)
177 PRK07231 fabG 3-ketoacyl-(acyl 95.6 0.15 3.2E-06 47.6 11.5 47 95-150 4-50 (251)
178 KOG1205 Predicted dehydrogenas 95.6 0.084 1.8E-06 51.8 9.9 120 95-228 11-155 (282)
179 PRK08040 putative semialdehyde 95.6 0.058 1.3E-06 54.3 9.1 73 95-181 3-75 (336)
180 TIGR03206 benzo_BadH 2-hydroxy 95.6 0.18 3.9E-06 47.1 12.0 46 96-150 3-48 (250)
181 PLN02657 3,8-divinyl protochlo 95.6 0.19 4.2E-06 51.4 13.0 28 94-121 58-85 (390)
182 PRK06196 oxidoreductase; Provi 95.6 0.073 1.6E-06 52.4 9.5 114 96-223 26-156 (315)
183 PRK07326 short chain dehydroge 95.6 0.19 4.1E-06 46.7 11.9 46 96-150 6-51 (237)
184 PF00899 ThiF: ThiF family; I 95.6 0.04 8.7E-07 47.6 6.7 76 97-181 3-101 (135)
185 KOG2711 Glycerol-3-phosphate d 95.5 0.087 1.9E-06 52.6 9.7 131 94-242 19-167 (372)
186 PRK12429 3-hydroxybutyrate deh 95.5 0.17 3.6E-06 47.5 11.5 46 96-150 4-49 (258)
187 PRK12480 D-lactate dehydrogena 95.5 0.065 1.4E-06 53.8 9.0 90 96-223 146-235 (330)
188 COG1712 Predicted dinucleotide 95.5 0.099 2.2E-06 49.5 9.4 97 97-226 1-97 (255)
189 PLN00141 Tic62-NAD(P)-related 95.5 0.034 7.3E-07 52.9 6.6 27 95-121 16-42 (251)
190 PRK11199 tyrA bifunctional cho 95.5 0.047 1E-06 55.7 8.0 27 95-121 97-123 (374)
191 PRK08213 gluconate 5-dehydroge 95.5 0.29 6.3E-06 46.3 13.0 118 96-223 12-149 (259)
192 PLN02350 phosphogluconate dehy 95.5 0.045 9.7E-07 57.8 7.9 102 95-224 5-109 (493)
193 TIGR01214 rmlD dTDP-4-dehydror 95.4 0.043 9.4E-07 52.8 7.2 95 98-222 1-99 (287)
194 cd01078 NAD_bind_H4MPT_DH NADP 95.4 0.065 1.4E-06 49.2 8.0 74 96-181 28-106 (194)
195 PRK06180 short chain dehydroge 95.4 0.069 1.5E-06 51.4 8.5 27 95-121 3-29 (277)
196 PRK14874 aspartate-semialdehyd 95.4 0.089 1.9E-06 52.8 9.4 72 96-181 1-72 (334)
197 cd01065 NAD_bind_Shikimate_DH 95.4 0.061 1.3E-06 47.0 7.4 73 95-181 18-90 (155)
198 PRK14806 bifunctional cyclohex 95.4 0.14 3E-06 56.7 11.8 94 97-222 4-97 (735)
199 TIGR01181 dTDP_gluc_dehyt dTDP 95.3 0.048 1E-06 52.7 7.3 117 98-222 1-124 (317)
200 TIGR02371 ala_DH_arch alanine 95.3 0.054 1.2E-06 54.2 7.8 74 94-179 126-199 (325)
201 COG4221 Short-chain alcohol de 95.3 0.1 2.2E-06 50.0 8.9 116 97-224 7-141 (246)
202 PRK07814 short chain dehydroge 95.3 0.18 3.9E-06 48.0 10.9 46 96-150 10-55 (263)
203 PRK05650 short chain dehydroge 95.3 0.31 6.8E-06 46.5 12.6 45 97-150 1-45 (270)
204 COG0569 TrkA K+ transport syst 95.2 0.021 4.5E-07 54.2 4.1 67 97-179 1-73 (225)
205 PRK08339 short chain dehydroge 95.2 0.42 9.2E-06 45.7 13.3 115 96-224 8-145 (263)
206 PRK07774 short chain dehydroge 95.2 0.22 4.8E-06 46.6 11.2 45 96-149 6-50 (250)
207 TIGR01035 hemA glutamyl-tRNA r 95.2 0.046 1E-06 56.6 7.0 104 96-228 180-283 (417)
208 PRK07454 short chain dehydroge 95.2 0.3 6.6E-06 45.5 11.9 47 94-149 4-50 (241)
209 TIGR02354 thiF_fam2 thiamine b 95.2 0.3 6.4E-06 45.5 11.6 25 96-121 21-45 (200)
210 PRK08265 short chain dehydroge 95.2 0.06 1.3E-06 51.3 7.3 44 96-148 6-49 (261)
211 PRK07890 short chain dehydroge 95.1 0.27 5.8E-06 46.3 11.5 47 95-150 4-50 (258)
212 PRK12937 short chain dehydroge 95.1 0.22 4.8E-06 46.4 10.8 29 93-121 2-30 (245)
213 PLN02968 Probable N-acetyl-gam 95.1 0.08 1.7E-06 54.2 8.2 27 95-121 37-63 (381)
214 PRK08291 ectoine utilization p 95.0 0.085 1.8E-06 52.9 8.1 73 95-179 131-204 (330)
215 PRK07478 short chain dehydroge 95.0 0.4 8.8E-06 45.1 12.5 113 96-223 6-143 (254)
216 PRK07825 short chain dehydroge 95.0 0.39 8.4E-06 45.9 12.4 114 96-223 5-137 (273)
217 PRK05653 fabG 3-ketoacyl-(acyl 95.0 0.16 3.4E-06 47.1 9.4 46 96-150 5-50 (246)
218 COG0136 Asd Aspartate-semialde 95.0 0.068 1.5E-06 53.4 7.1 73 96-181 1-75 (334)
219 PF01370 Epimerase: NAD depend 94.9 0.026 5.6E-07 52.3 3.9 109 99-223 1-116 (236)
220 cd00757 ThiF_MoeB_HesA_family 94.9 0.14 3E-06 48.5 8.9 25 96-121 21-45 (228)
221 PRK07523 gluconate 5-dehydroge 94.9 0.3 6.4E-06 46.1 11.2 46 96-150 10-55 (255)
222 PRK08643 acetoin reductase; Va 94.9 0.33 7.2E-06 45.7 11.5 45 97-150 3-47 (256)
223 PRK10217 dTDP-glucose 4,6-dehy 94.9 0.082 1.8E-06 52.7 7.6 104 96-211 1-115 (355)
224 TIGR00873 gnd 6-phosphoglucona 94.9 0.093 2E-06 55.2 8.2 102 98-229 1-107 (467)
225 PRK07069 short chain dehydroge 94.9 0.44 9.5E-06 44.5 12.1 116 98-224 1-139 (251)
226 TIGR01472 gmd GDP-mannose 4,6- 94.9 0.081 1.8E-06 52.6 7.4 25 97-121 1-25 (343)
227 PRK12827 short chain dehydroge 94.8 0.53 1.1E-05 43.8 12.5 26 96-121 6-31 (249)
228 PRK06407 ornithine cyclodeamin 94.8 0.091 2E-06 52.1 7.5 75 94-179 115-189 (301)
229 PRK06101 short chain dehydroge 94.8 0.1 2.2E-06 49.0 7.5 41 96-145 1-41 (240)
230 PRK06141 ornithine cyclodeamin 94.8 0.1 2.2E-06 52.0 7.8 72 95-179 124-196 (314)
231 PRK08269 3-hydroxybutyryl-CoA 94.8 0.13 2.7E-06 51.4 8.5 57 158-230 63-121 (314)
232 PRK08085 gluconate 5-dehydroge 94.8 0.23 5E-06 46.8 10.0 48 95-151 8-55 (254)
233 PLN02686 cinnamoyl-CoA reducta 94.8 0.094 2E-06 53.1 7.7 118 95-223 52-180 (367)
234 PRK07424 bifunctional sterol d 94.8 0.15 3.4E-06 52.6 9.3 103 95-210 177-290 (406)
235 PRK08618 ornithine cyclodeamin 94.7 0.093 2E-06 52.5 7.5 74 95-179 126-199 (325)
236 TIGR01724 hmd_rel H2-forming N 94.7 0.41 8.9E-06 47.8 11.7 95 108-232 31-127 (341)
237 KOG1430 C-3 sterol dehydrogena 94.7 0.089 1.9E-06 53.3 7.3 112 94-211 2-116 (361)
238 PRK09072 short chain dehydroge 94.7 0.29 6.4E-06 46.4 10.6 46 95-149 4-49 (263)
239 PRK09186 flagellin modificatio 94.7 0.33 7E-06 45.6 10.9 45 96-149 4-48 (256)
240 PRK09291 short chain dehydroge 94.7 0.59 1.3E-05 43.9 12.6 25 97-121 3-27 (257)
241 PRK07832 short chain dehydroge 94.7 0.55 1.2E-05 44.9 12.5 45 97-150 1-45 (272)
242 PRK05717 oxidoreductase; Valid 94.7 0.065 1.4E-06 50.7 6.0 26 96-121 10-35 (255)
243 PRK07453 protochlorophyllide o 94.7 0.3 6.5E-06 48.1 10.9 46 95-149 5-50 (322)
244 PRK05479 ketol-acid reductoiso 94.7 0.15 3.2E-06 51.2 8.6 66 95-180 16-81 (330)
245 PRK12826 3-ketoacyl-(acyl-carr 94.6 0.67 1.5E-05 43.1 12.7 46 96-150 6-51 (251)
246 PRK05565 fabG 3-ketoacyl-(acyl 94.6 0.64 1.4E-05 43.1 12.6 26 96-121 5-30 (247)
247 PRK06181 short chain dehydroge 94.6 0.42 9.1E-06 45.2 11.4 46 96-150 1-46 (263)
248 KOG1429 dTDP-glucose 4-6-dehyd 94.6 0.066 1.4E-06 52.4 5.7 75 95-181 26-100 (350)
249 PRK08300 acetaldehyde dehydrog 94.6 0.78 1.7E-05 45.5 13.4 24 95-119 3-26 (302)
250 PRK06124 gluconate 5-dehydroge 94.6 0.73 1.6E-05 43.4 13.0 48 94-150 9-56 (256)
251 PRK06182 short chain dehydroge 94.6 0.12 2.5E-06 49.6 7.5 112 96-223 3-133 (273)
252 PRK06197 short chain dehydroge 94.6 0.45 9.7E-06 46.5 11.8 117 95-224 15-153 (306)
253 PRK06901 aspartate-semialdehyd 94.5 0.17 3.8E-06 50.4 8.7 68 96-181 3-73 (322)
254 PRK07109 short chain dehydroge 94.5 0.56 1.2E-05 46.8 12.5 116 96-223 8-144 (334)
255 PRK00045 hemA glutamyl-tRNA re 94.5 0.12 2.6E-06 53.6 7.9 106 95-228 181-286 (423)
256 TIGR02992 ectoine_eutC ectoine 94.5 0.13 2.8E-06 51.5 7.8 73 95-179 128-201 (326)
257 PRK06482 short chain dehydroge 94.5 0.14 3E-06 49.1 7.8 25 97-121 3-27 (276)
258 PRK13302 putative L-aspartate 94.5 0.18 3.8E-06 49.2 8.6 72 95-181 5-76 (271)
259 cd01487 E1_ThiF_like E1_ThiF_l 94.4 0.18 3.9E-06 45.9 8.0 23 98-121 1-23 (174)
260 PRK12747 short chain dehydroge 94.4 0.8 1.7E-05 43.1 12.8 26 96-121 4-29 (252)
261 PRK12825 fabG 3-ketoacyl-(acyl 94.4 0.58 1.3E-05 43.3 11.7 27 95-121 5-31 (249)
262 PRK07024 short chain dehydroge 94.4 0.29 6.2E-06 46.4 9.8 45 96-149 2-46 (257)
263 PLN02712 arogenate dehydrogena 94.4 0.39 8.4E-06 52.8 12.0 25 95-120 368-392 (667)
264 PRK07067 sorbitol dehydrogenas 94.4 0.18 3.9E-06 47.7 8.3 45 96-149 6-50 (257)
265 PRK08219 short chain dehydroge 94.4 0.21 4.5E-06 45.9 8.6 24 96-119 3-26 (227)
266 PF02423 OCD_Mu_crystall: Orni 94.4 0.1 2.2E-06 51.9 6.9 73 95-179 127-199 (313)
267 PRK05866 short chain dehydroge 94.4 0.63 1.4E-05 45.4 12.4 46 96-150 40-85 (293)
268 PRK07201 short chain dehydroge 94.4 0.4 8.7E-06 52.0 12.0 103 97-211 1-115 (657)
269 PRK06128 oxidoreductase; Provi 94.4 0.42 9.1E-06 46.7 11.1 117 96-223 55-192 (300)
270 PRK09135 pteridine reductase; 94.4 0.27 5.8E-06 45.8 9.3 26 96-121 6-31 (249)
271 PRK07904 short chain dehydroge 94.3 0.6 1.3E-05 44.4 11.8 116 95-223 7-146 (253)
272 TIGR02415 23BDH acetoin reduct 94.3 0.48 1E-05 44.4 11.0 44 98-150 2-45 (254)
273 PRK12828 short chain dehydroge 94.3 0.24 5.1E-06 45.8 8.7 26 96-121 7-32 (239)
274 PRK05993 short chain dehydroge 94.3 0.12 2.5E-06 49.9 6.8 26 96-121 4-29 (277)
275 PRK08945 putative oxoacyl-(acy 94.3 1 2.2E-05 42.2 13.1 48 95-151 11-58 (247)
276 PRK12384 sorbitol-6-phosphate 94.3 0.61 1.3E-05 44.0 11.7 116 97-224 3-142 (259)
277 PRK08340 glucose-1-dehydrogena 94.3 0.58 1.3E-05 44.3 11.5 45 97-150 1-45 (259)
278 PRK07666 fabG 3-ketoacyl-(acyl 94.3 0.75 1.6E-05 42.8 12.1 45 96-149 7-51 (239)
279 PRK12744 short chain dehydroge 94.2 0.72 1.6E-05 43.6 12.1 26 96-121 8-33 (257)
280 TIGR02197 heptose_epim ADP-L-g 94.2 0.16 3.5E-06 49.3 7.8 110 99-223 1-114 (314)
281 PRK06172 short chain dehydroge 94.2 0.51 1.1E-05 44.4 11.0 46 96-150 7-52 (253)
282 PRK15059 tartronate semialdehy 94.2 0.13 2.9E-06 50.6 7.2 63 97-180 1-63 (292)
283 PRK08664 aspartate-semialdehyd 94.2 0.19 4.2E-06 50.7 8.4 26 96-121 3-28 (349)
284 PLN02780 ketoreductase/ oxidor 94.2 0.64 1.4E-05 46.2 12.1 47 96-151 53-99 (320)
285 KOG1014 17 beta-hydroxysteroid 94.2 0.38 8.3E-06 47.6 10.1 113 99-223 52-187 (312)
286 PRK06138 short chain dehydroge 94.2 0.91 2E-05 42.4 12.6 45 96-149 5-49 (252)
287 PRK05557 fabG 3-ketoacyl-(acyl 94.2 0.9 2E-05 42.0 12.4 28 94-121 3-30 (248)
288 PRK06199 ornithine cyclodeamin 94.2 0.17 3.7E-06 51.8 8.0 76 95-179 154-230 (379)
289 TIGR01296 asd_B aspartate-semi 94.2 0.19 4.1E-06 50.6 8.3 70 98-181 1-70 (339)
290 PRK06139 short chain dehydroge 94.1 0.52 1.1E-05 47.1 11.3 47 96-151 7-53 (330)
291 PRK05876 short chain dehydroge 94.1 0.61 1.3E-05 45.0 11.5 114 96-223 6-143 (275)
292 PRK10084 dTDP-glucose 4,6 dehy 94.1 0.15 3.2E-06 50.7 7.3 105 97-211 1-114 (352)
293 PRK06940 short chain dehydroge 94.0 0.58 1.3E-05 45.1 11.1 95 98-206 4-109 (275)
294 PRK07340 ornithine cyclodeamin 94.0 0.17 3.6E-06 50.2 7.4 71 95-179 124-195 (304)
295 PRK08251 short chain dehydroge 94.0 1.1 2.4E-05 41.8 12.8 76 97-183 3-92 (248)
296 PLN02253 xanthoxin dehydrogena 94.0 0.23 5E-06 47.6 8.3 26 96-121 18-43 (280)
297 cd05311 NAD_bind_2_malic_enz N 94.0 0.36 7.7E-06 45.8 9.3 101 96-226 25-132 (226)
298 PRK05865 hypothetical protein; 94.0 0.089 1.9E-06 59.1 6.0 103 97-225 1-105 (854)
299 PRK06823 ornithine cyclodeamin 94.0 0.21 4.5E-06 49.9 8.0 73 95-179 127-199 (315)
300 PRK12936 3-ketoacyl-(acyl-carr 93.9 0.22 4.8E-06 46.3 7.8 27 95-121 5-31 (245)
301 PRK07035 short chain dehydroge 93.9 0.54 1.2E-05 44.2 10.5 46 96-150 8-53 (252)
302 PLN02653 GDP-mannose 4,6-dehyd 93.9 0.48 1E-05 47.0 10.6 26 96-121 6-31 (340)
303 PRK06949 short chain dehydroge 93.9 0.41 8.9E-06 45.0 9.7 45 96-149 9-53 (258)
304 PLN02260 probable rhamnose bio 93.9 0.47 1E-05 51.9 11.5 96 94-221 378-479 (668)
305 PRK07589 ornithine cyclodeamin 93.9 0.17 3.7E-06 51.1 7.4 73 95-179 128-200 (346)
306 cd01483 E1_enzyme_family Super 93.9 0.54 1.2E-05 40.8 9.7 23 98-121 1-23 (143)
307 KOG0409 Predicted dehydrogenas 93.9 0.23 4.9E-06 49.0 7.8 100 96-218 35-151 (327)
308 PRK12320 hypothetical protein; 93.9 0.11 2.4E-06 57.2 6.3 100 97-222 1-101 (699)
309 PF02826 2-Hacid_dh_C: D-isome 93.9 0.12 2.7E-06 46.9 5.7 94 96-224 36-129 (178)
310 PRK08644 thiamine biosynthesis 93.9 0.29 6.3E-06 45.9 8.4 26 95-121 27-52 (212)
311 PRK07985 oxidoreductase; Provi 93.8 0.75 1.6E-05 44.9 11.6 25 97-121 50-74 (294)
312 PLN02260 probable rhamnose bio 93.8 0.65 1.4E-05 50.8 12.3 115 95-223 5-132 (668)
313 PRK07677 short chain dehydroge 93.8 1.2 2.7E-05 41.8 12.7 45 97-150 2-46 (252)
314 PRK08063 enoyl-(acyl carrier p 93.8 1.1 2.5E-05 41.7 12.4 26 96-121 4-29 (250)
315 PRK05875 short chain dehydroge 93.8 0.96 2.1E-05 43.1 12.1 46 96-150 7-52 (276)
316 PRK06198 short chain dehydroge 93.8 0.99 2.2E-05 42.5 12.1 26 96-121 6-31 (260)
317 PLN00203 glutamyl-tRNA reducta 93.8 0.22 4.7E-06 53.1 8.2 106 96-227 266-374 (519)
318 PRK05867 short chain dehydroge 93.8 1.2 2.7E-05 41.9 12.7 46 96-150 9-54 (253)
319 smart00859 Semialdhyde_dh Semi 93.8 0.3 6.4E-06 41.2 7.5 23 98-120 1-23 (122)
320 PRK05884 short chain dehydroge 93.7 0.22 4.7E-06 46.5 7.3 42 97-147 1-42 (223)
321 TIGR03325 BphB_TodD cis-2,3-di 93.7 0.11 2.4E-06 49.4 5.4 41 95-144 4-44 (262)
322 PRK00258 aroE shikimate 5-dehy 93.7 0.3 6.6E-06 47.6 8.6 72 95-180 122-193 (278)
323 TIGR02356 adenyl_thiF thiazole 93.7 0.51 1.1E-05 43.8 9.7 25 96-121 21-45 (202)
324 PRK08703 short chain dehydroge 93.7 1.2 2.7E-05 41.4 12.5 45 96-149 6-50 (239)
325 PRK13301 putative L-aspartate 93.7 0.34 7.5E-06 47.1 8.7 96 97-226 3-99 (267)
326 PRK00048 dihydrodipicolinate r 93.7 1.3 2.8E-05 42.8 12.7 67 96-179 1-67 (257)
327 PRK12829 short chain dehydroge 93.7 1.4 3E-05 41.4 12.9 27 95-121 10-36 (264)
328 PRK08223 hypothetical protein; 93.7 0.26 5.5E-06 48.6 7.9 25 96-121 27-51 (287)
329 PRK09242 tropinone reductase; 93.7 1.1 2.5E-05 42.1 12.3 115 96-223 9-147 (257)
330 PRK13940 glutamyl-tRNA reducta 93.7 0.13 2.9E-06 53.2 6.2 73 96-183 181-253 (414)
331 PRK05855 short chain dehydroge 93.6 0.62 1.3E-05 49.2 11.5 115 96-224 315-453 (582)
332 PRK08263 short chain dehydroge 93.6 0.15 3.3E-06 48.9 6.3 25 97-121 4-28 (275)
333 PRK12475 thiamine/molybdopteri 93.6 0.26 5.6E-06 49.7 8.0 25 96-121 24-48 (338)
334 PRK07063 short chain dehydroge 93.6 1.2 2.5E-05 42.1 12.1 47 96-151 7-53 (260)
335 PRK06125 short chain dehydroge 93.5 1.7 3.8E-05 41.0 13.3 117 96-223 7-140 (259)
336 TIGR01963 PHB_DH 3-hydroxybuty 93.5 1.1 2.3E-05 41.9 11.7 25 97-121 2-26 (255)
337 PRK07097 gluconate 5-dehydroge 93.5 1 2.2E-05 42.8 11.7 47 95-150 9-55 (265)
338 PRK06924 short chain dehydroge 93.5 0.14 3E-06 48.1 5.6 26 96-121 1-26 (251)
339 PRK07576 short chain dehydroge 93.5 0.82 1.8E-05 43.6 10.9 46 96-150 9-54 (264)
340 PRK00436 argC N-acetyl-gamma-g 93.4 0.37 8E-06 48.6 8.9 25 96-120 2-26 (343)
341 TIGR02853 spore_dpaA dipicolin 93.4 0.33 7.1E-06 47.8 8.3 102 96-234 151-253 (287)
342 PRK06500 short chain dehydroge 93.4 0.31 6.8E-06 45.5 7.9 26 96-121 6-31 (249)
343 COG0677 WecC UDP-N-acetyl-D-ma 93.4 0.73 1.6E-05 47.2 10.6 76 96-183 9-95 (436)
344 TIGR01692 HIBADH 3-hydroxyisob 93.3 0.19 4.1E-06 49.2 6.4 60 101-180 1-60 (288)
345 cd01485 E1-1_like Ubiquitin ac 93.3 0.53 1.1E-05 43.7 9.1 24 97-121 20-43 (198)
346 PRK07062 short chain dehydroge 93.3 1.6 3.5E-05 41.3 12.7 46 96-150 8-53 (265)
347 PRK07074 short chain dehydroge 93.3 1.7 3.6E-05 41.0 12.7 44 97-149 3-46 (257)
348 PRK13243 glyoxylate reductase; 93.3 0.2 4.3E-06 50.4 6.5 98 96-229 150-249 (333)
349 COG0373 HemA Glutamyl-tRNA red 93.3 0.18 3.8E-06 52.1 6.3 73 95-183 177-249 (414)
350 PF00185 OTCace: Aspartate/orn 93.3 0.44 9.6E-06 42.6 8.2 76 96-181 2-82 (158)
351 TIGR00465 ilvC ketol-acid redu 93.2 0.42 9.2E-06 47.7 8.8 65 96-180 3-67 (314)
352 PRK15469 ghrA bifunctional gly 93.2 0.23 4.9E-06 49.5 6.8 92 96-223 136-227 (312)
353 cd01491 Ube1_repeat1 Ubiquitin 93.2 1.2 2.6E-05 43.9 11.8 86 84-180 9-113 (286)
354 PRK06179 short chain dehydroge 93.2 0.66 1.4E-05 44.1 9.8 26 96-121 4-29 (270)
355 PRK11863 N-acetyl-gamma-glutam 93.2 0.48 1E-05 47.3 9.1 26 96-121 2-27 (313)
356 COG1090 Predicted nucleoside-d 93.2 0.41 8.9E-06 46.7 8.2 94 99-211 1-99 (297)
357 COG4007 Predicted dehydrogenas 93.1 1 2.2E-05 43.6 10.6 141 96-281 1-165 (340)
358 PRK08589 short chain dehydroge 93.1 1.7 3.8E-05 41.5 12.7 45 96-150 6-50 (272)
359 PRK08324 short chain dehydroge 93.1 1.3 2.8E-05 48.8 13.1 44 97-149 423-466 (681)
360 PRK05690 molybdopterin biosynt 93.1 0.39 8.5E-06 46.1 8.1 25 96-121 32-56 (245)
361 TIGR01809 Shik-DH-AROM shikima 93.1 0.24 5.2E-06 48.5 6.7 70 96-179 125-197 (282)
362 PRK12935 acetoacetyl-CoA reduc 93.0 1.1 2.4E-05 41.8 11.0 26 96-121 6-31 (247)
363 cd05312 NAD_bind_1_malic_enz N 93.0 0.09 2E-06 51.4 3.6 134 96-252 25-171 (279)
364 PRK05786 fabG 3-ketoacyl-(acyl 93.0 0.8 1.7E-05 42.4 10.0 45 96-149 5-49 (238)
365 PRK08277 D-mannonate oxidoredu 93.0 1.3 2.8E-05 42.4 11.6 46 96-150 10-55 (278)
366 PRK06914 short chain dehydroge 93.0 1.1 2.3E-05 42.9 11.1 25 97-121 4-28 (280)
367 PRK12823 benD 1,6-dihydroxycyc 93.0 1.7 3.6E-05 41.0 12.3 26 96-121 8-33 (260)
368 PRK06113 7-alpha-hydroxysteroi 93.0 1.2 2.7E-05 41.9 11.3 47 95-150 10-56 (255)
369 PRK06077 fabG 3-ketoacyl-(acyl 93.0 1 2.3E-05 42.0 10.7 27 95-121 5-31 (252)
370 PRK08642 fabG 3-ketoacyl-(acyl 93.0 0.47 1E-05 44.4 8.3 27 95-121 4-30 (253)
371 TIGR01850 argC N-acetyl-gamma- 92.9 0.41 8.9E-06 48.3 8.3 25 97-121 1-25 (346)
372 PRK06947 glucose-1-dehydrogena 92.9 1.1 2.5E-05 41.7 10.9 26 96-121 2-27 (248)
373 PRK07574 formate dehydrogenase 92.9 0.42 9.2E-06 49.0 8.4 99 97-229 193-293 (385)
374 PRK09134 short chain dehydroge 92.9 1.2 2.7E-05 42.0 11.1 27 95-121 8-34 (258)
375 PRK07688 thiamine/molybdopteri 92.8 0.39 8.5E-06 48.4 7.9 25 96-121 24-48 (339)
376 PRK05872 short chain dehydroge 92.8 1.7 3.7E-05 42.3 12.4 46 96-150 9-54 (296)
377 PRK05693 short chain dehydroge 92.8 1.8 3.8E-05 41.4 12.2 26 96-121 1-26 (274)
378 TIGR01832 kduD 2-deoxy-D-gluco 92.8 1.7 3.7E-05 40.6 11.9 27 95-121 4-30 (248)
379 PRK08217 fabG 3-ketoacyl-(acyl 92.8 1.7 3.6E-05 40.5 11.8 45 96-149 5-49 (253)
380 TIGR00507 aroE shikimate 5-deh 92.7 0.56 1.2E-05 45.5 8.6 72 95-181 116-187 (270)
381 PRK06200 2,3-dihydroxy-2,3-dih 92.7 0.25 5.4E-06 46.9 6.1 45 95-148 5-49 (263)
382 PRK06701 short chain dehydroge 92.6 1.8 3.9E-05 42.1 12.2 48 74-121 20-71 (290)
383 PRK08862 short chain dehydroge 92.6 2.2 4.7E-05 40.0 12.3 46 96-150 5-50 (227)
384 PF03435 Saccharop_dh: Sacchar 92.6 0.21 4.5E-06 50.9 5.7 73 99-182 1-77 (386)
385 TIGR03736 PRTRC_ThiF PRTRC sys 92.5 1.7 3.6E-05 41.9 11.4 29 92-121 7-35 (244)
386 PRK07775 short chain dehydroge 92.4 1.8 3.9E-05 41.5 11.8 26 96-121 10-35 (274)
387 PRK12557 H(2)-dependent methyl 92.4 0.96 2.1E-05 45.7 10.2 56 109-179 32-88 (342)
388 TIGR01179 galE UDP-glucose-4-e 92.4 0.98 2.1E-05 43.7 10.0 108 98-222 1-120 (328)
389 PRK08818 prephenate dehydrogen 92.3 0.77 1.7E-05 46.9 9.3 56 96-180 4-59 (370)
390 PRK06935 2-deoxy-D-gluconate 3 92.3 1.1 2.4E-05 42.3 10.0 27 95-121 14-40 (258)
391 PRK08264 short chain dehydroge 92.3 1.2 2.6E-05 41.3 10.1 27 95-121 5-31 (238)
392 PRK08605 D-lactate dehydrogena 92.3 0.27 5.9E-06 49.3 6.0 63 96-180 146-208 (332)
393 PRK06046 alanine dehydrogenase 92.3 0.45 9.7E-06 47.6 7.5 73 95-179 128-200 (326)
394 cd00401 AdoHcyase S-adenosyl-L 92.2 0.58 1.3E-05 48.4 8.4 91 95-224 201-291 (413)
395 TIGR03693 ocin_ThiF_like putat 92.2 0.68 1.5E-05 49.9 9.1 81 95-183 128-215 (637)
396 TIGR02355 moeB molybdopterin s 92.2 0.6 1.3E-05 44.7 7.9 25 96-121 24-48 (240)
397 PRK08416 7-alpha-hydroxysteroi 92.1 2.1 4.5E-05 40.6 11.7 47 96-150 8-54 (260)
398 PRK08226 short chain dehydroge 92.1 1.2 2.6E-05 42.1 10.0 26 96-121 6-31 (263)
399 PRK08628 short chain dehydroge 92.1 2.8 6.2E-05 39.4 12.5 26 96-121 7-32 (258)
400 PRK12743 oxidoreductase; Provi 92.1 3.1 6.7E-05 39.2 12.8 25 97-121 3-27 (256)
401 PLN03139 formate dehydrogenase 92.0 0.56 1.2E-05 48.2 8.0 100 96-229 199-300 (386)
402 PRK07201 short chain dehydroge 92.0 1.4 3.1E-05 47.7 11.7 46 96-150 371-416 (657)
403 PRK05599 hypothetical protein; 92.0 1.6 3.4E-05 41.3 10.7 117 97-224 1-138 (246)
404 TIGR00978 asd_EA aspartate-sem 92.0 0.75 1.6E-05 46.3 8.9 25 97-121 1-25 (341)
405 PRK06153 hypothetical protein; 92.0 0.29 6.4E-06 50.0 5.9 47 73-121 150-200 (393)
406 PRK07060 short chain dehydroge 92.0 0.58 1.3E-05 43.5 7.6 26 96-121 9-34 (245)
407 TIGR01746 Thioester-redct thio 92.0 2.1 4.5E-05 42.0 11.9 108 98-211 1-126 (367)
408 PF04321 RmlD_sub_bind: RmlD s 91.9 0.5 1.1E-05 46.2 7.2 98 97-222 1-100 (286)
409 TIGR03649 ergot_EASG ergot alk 91.8 0.14 3E-06 49.4 3.3 24 98-121 1-24 (285)
410 COG0289 DapB Dihydrodipicolina 91.8 0.8 1.7E-05 44.4 8.3 72 96-177 2-74 (266)
411 cd01075 NAD_bind_Leu_Phe_Val_D 91.8 0.48 1E-05 44.0 6.6 65 96-180 28-93 (200)
412 PRK06718 precorrin-2 dehydroge 91.8 0.96 2.1E-05 42.1 8.6 69 95-181 9-79 (202)
413 PRK05476 S-adenosyl-L-homocyst 91.8 0.52 1.1E-05 49.0 7.5 92 95-225 211-302 (425)
414 PRK08278 short chain dehydroge 91.8 2.6 5.6E-05 40.4 12.0 27 95-121 5-31 (273)
415 TIGR00936 ahcY adenosylhomocys 91.7 0.57 1.2E-05 48.4 7.7 91 95-224 194-284 (406)
416 TIGR01829 AcAcCoA_reduct aceto 91.7 2.6 5.6E-05 39.0 11.5 24 98-121 2-25 (242)
417 PRK12742 oxidoreductase; Provi 91.6 0.88 1.9E-05 42.1 8.3 26 96-121 6-31 (237)
418 TIGR02632 RhaD_aldol-ADH rhamn 91.6 0.75 1.6E-05 50.7 9.0 46 96-150 414-459 (676)
419 PRK08936 glucose-1-dehydrogena 91.6 2.8 6.2E-05 39.5 11.9 26 96-121 7-32 (261)
420 PRK13303 L-aspartate dehydroge 91.5 1.4 3.1E-05 42.6 10.0 24 96-120 1-24 (265)
421 cd01492 Aos1_SUMO Ubiquitin ac 91.5 0.52 1.1E-05 43.7 6.5 25 96-121 21-45 (197)
422 PRK12938 acetyacetyl-CoA reduc 91.5 2.9 6.2E-05 38.9 11.7 25 97-121 4-28 (246)
423 PRK08306 dipicolinate synthase 91.5 0.7 1.5E-05 45.6 7.8 68 95-180 151-218 (296)
424 PRK00257 erythronate-4-phospha 91.5 0.34 7.3E-06 49.7 5.7 59 96-179 116-174 (381)
425 COG2423 Predicted ornithine cy 91.4 0.57 1.2E-05 47.1 7.1 74 95-179 129-202 (330)
426 PRK12824 acetoacetyl-CoA reduc 91.4 3.4 7.3E-05 38.2 12.1 25 97-121 3-27 (245)
427 PLN02928 oxidoreductase family 91.4 0.36 7.8E-06 48.8 5.8 104 96-223 159-263 (347)
428 COG0002 ArgC Acetylglutamate s 91.4 0.34 7.4E-06 48.6 5.4 27 95-121 1-27 (349)
429 PRK13535 erythrose 4-phosphate 91.3 0.35 7.6E-06 48.7 5.5 25 96-121 1-25 (336)
430 COG0111 SerA Phosphoglycerate 91.3 0.4 8.6E-06 48.1 5.8 93 96-223 142-234 (324)
431 COG1064 AdhP Zn-dependent alco 91.1 2.3 5E-05 42.9 11.1 128 94-261 165-301 (339)
432 PF05368 NmrA: NmrA-like famil 91.1 0.41 8.8E-06 44.8 5.5 68 99-181 1-73 (233)
433 PRK14027 quinate/shikimate deh 91.1 0.51 1.1E-05 46.3 6.4 73 96-179 127-201 (283)
434 PF00106 adh_short: short chai 91.1 2.2 4.9E-05 37.0 10.0 115 98-226 2-138 (167)
435 COG0078 ArgF Ornithine carbamo 91.0 1.2 2.6E-05 44.0 8.7 76 95-179 152-228 (310)
436 COG1091 RfbD dTDP-4-dehydrorha 91.0 0.6 1.3E-05 45.8 6.6 95 97-222 1-99 (281)
437 PLN02494 adenosylhomocysteinas 90.9 0.63 1.4E-05 48.9 7.1 94 95-227 253-346 (477)
438 PRK06953 short chain dehydroge 90.8 2 4.4E-05 39.6 9.9 26 96-121 1-26 (222)
439 PLN02858 fructose-bisphosphate 90.8 0.76 1.6E-05 54.5 8.5 68 94-181 322-389 (1378)
440 PRK06114 short chain dehydroge 90.7 3.1 6.8E-05 39.1 11.2 26 96-121 8-33 (254)
441 PRK07877 hypothetical protein; 90.5 0.61 1.3E-05 51.6 6.9 27 96-124 107-133 (722)
442 PRK15438 erythronate-4-phospha 90.4 0.51 1.1E-05 48.3 5.8 26 95-121 115-140 (378)
443 PRK12367 short chain dehydroge 90.4 1.6 3.5E-05 41.5 9.0 26 96-121 14-39 (245)
444 PF01408 GFO_IDH_MocA: Oxidore 90.4 0.38 8.2E-06 40.0 4.1 67 97-180 1-70 (120)
445 PRK08177 short chain dehydroge 90.3 0.52 1.1E-05 43.6 5.4 26 96-121 1-26 (225)
446 PTZ00075 Adenosylhomocysteinas 90.3 0.71 1.5E-05 48.5 6.9 91 95-224 253-343 (476)
447 PRK09496 trkA potassium transp 90.1 0.78 1.7E-05 47.4 7.0 67 97-180 1-73 (453)
448 TIGR01289 LPOR light-dependent 90.1 4.6 0.0001 39.7 12.2 115 97-223 4-143 (314)
449 KOG4777 Aspartate-semialdehyde 90.0 0.23 4.9E-06 47.9 2.7 77 97-180 4-85 (361)
450 PRK07878 molybdopterin biosynt 89.9 1.1 2.4E-05 46.0 7.8 25 96-121 42-66 (392)
451 COG1052 LdhA Lactate dehydroge 89.9 0.79 1.7E-05 46.0 6.5 92 96-223 146-237 (324)
452 COG1087 GalE UDP-glucose 4-epi 89.8 1.5 3.4E-05 43.4 8.3 108 97-218 1-114 (329)
453 cd00755 YgdL_like Family of ac 89.7 0.89 1.9E-05 43.3 6.5 25 96-121 11-35 (231)
454 PLN02858 fructose-bisphosphate 89.7 1.1 2.3E-05 53.3 8.4 65 96-180 4-68 (1378)
455 PRK14106 murD UDP-N-acetylmura 89.7 1.2 2.5E-05 46.2 8.0 111 96-225 5-117 (450)
456 PRK07856 short chain dehydroge 89.7 0.68 1.5E-05 43.6 5.8 27 95-121 5-31 (252)
457 TIGR01851 argC_other N-acetyl- 89.7 1.6 3.5E-05 43.5 8.5 25 97-121 2-26 (310)
458 PLN02996 fatty acyl-CoA reduct 89.7 4.8 0.0001 42.6 12.6 27 93-119 8-34 (491)
459 KOG1201 Hydroxysteroid 17-beta 89.7 3.8 8.2E-05 40.5 10.8 117 96-223 38-173 (300)
460 PRK05597 molybdopterin biosynt 89.7 1.3 2.9E-05 44.8 8.1 77 96-181 28-127 (355)
461 PRK06463 fabG 3-ketoacyl-(acyl 89.5 1.7 3.6E-05 41.0 8.3 27 95-121 6-32 (255)
462 PRK04207 glyceraldehyde-3-phos 89.4 1 2.2E-05 45.5 7.0 78 96-181 1-87 (341)
463 TIGR01830 3oxo_ACP_reduc 3-oxo 89.4 2.3 5.1E-05 39.1 9.0 23 99-121 1-23 (239)
464 PRK07831 short chain dehydroge 89.4 5.6 0.00012 37.6 11.8 46 96-150 17-63 (262)
465 PRK01710 murD UDP-N-acetylmura 89.3 1.4 3E-05 46.1 8.2 100 90-204 8-108 (458)
466 cd00762 NAD_bind_malic_enz NAD 89.3 0.37 8.1E-06 46.6 3.6 135 96-254 25-174 (254)
467 PRK09730 putative NAD(P)-bindi 89.2 3.4 7.5E-05 38.2 10.1 26 96-121 1-26 (247)
468 COG3967 DltE Short-chain dehyd 89.2 5 0.00011 37.9 10.7 117 95-223 4-139 (245)
469 PRK07411 hypothetical protein; 89.2 1.3 2.9E-05 45.4 7.8 25 96-121 38-62 (390)
470 PRK12749 quinate/shikimate deh 89.1 1.4 3E-05 43.4 7.6 72 96-179 124-203 (288)
471 TIGR01470 cysG_Nterm siroheme 89.1 3.2 7E-05 38.7 9.7 68 96-181 9-78 (205)
472 PRK06484 short chain dehydroge 89.0 1.2 2.5E-05 47.0 7.4 119 95-224 268-402 (520)
473 PRK07889 enoyl-(acyl carrier p 88.9 1.5 3.3E-05 41.7 7.5 26 96-121 7-34 (256)
474 PRK08762 molybdopterin biosynt 88.9 1.3 2.9E-05 45.1 7.5 25 96-121 135-159 (376)
475 PRK15116 sulfur acceptor prote 88.8 1.3 2.7E-05 43.3 6.9 25 96-121 30-54 (268)
476 COG0702 Predicted nucleoside-d 88.7 0.43 9.4E-06 45.1 3.6 72 97-181 1-72 (275)
477 PRK06841 short chain dehydroge 88.7 1.6 3.4E-05 41.0 7.5 26 96-121 15-40 (255)
478 PRK08410 2-hydroxyacid dehydro 88.7 1.1 2.3E-05 44.7 6.5 89 96-223 145-233 (311)
479 TIGR00670 asp_carb_tr aspartat 88.5 2.9 6.2E-05 41.5 9.4 73 95-179 149-223 (301)
480 cd01488 Uba3_RUB Ubiquitin act 88.5 1.1 2.4E-05 44.3 6.3 23 98-121 1-23 (291)
481 PF07991 IlvN: Acetohydroxy ac 88.5 1.8 3.8E-05 39.2 7.0 65 95-179 3-67 (165)
482 PRK06719 precorrin-2 dehydroge 88.4 3.4 7.3E-05 36.9 9.0 26 95-121 12-37 (157)
483 PLN02725 GDP-4-keto-6-deoxyman 88.4 0.98 2.1E-05 43.6 6.0 94 101-222 2-100 (306)
484 COG0169 AroE Shikimate 5-dehyd 88.3 1.7 3.7E-05 42.7 7.5 71 96-179 126-197 (283)
485 TIGR00036 dapB dihydrodipicoli 88.3 0.81 1.8E-05 44.4 5.3 24 96-119 1-24 (266)
486 cd01489 Uba2_SUMO Ubiquitin ac 88.2 1.7 3.8E-05 43.3 7.6 23 98-121 1-23 (312)
487 cd01484 E1-2_like Ubiquitin ac 88.2 1.7 3.8E-05 41.5 7.4 23 98-121 1-23 (234)
488 PRK03562 glutathione-regulated 88.2 6.4 0.00014 43.0 12.6 136 96-271 400-542 (621)
489 PRK05600 thiamine biosynthesis 88.1 1.5 3.2E-05 44.8 7.2 25 96-121 41-65 (370)
490 PRK06523 short chain dehydroge 88.0 1.6 3.6E-05 41.0 7.1 26 96-121 9-34 (260)
491 PLN02306 hydroxypyruvate reduc 88.0 1.1 2.4E-05 46.0 6.2 104 96-223 165-273 (386)
492 PLN03129 NADP-dependent malic 87.9 0.55 1.2E-05 50.3 4.0 133 96-253 321-468 (581)
493 PLN02819 lysine-ketoglutarate 87.8 0.55 1.2E-05 53.9 4.3 79 94-180 567-656 (1042)
494 PRK03659 glutathione-regulated 87.8 3.6 7.7E-05 44.7 10.3 137 96-272 400-543 (601)
495 PRK06398 aldose dehydrogenase; 87.8 1.2 2.7E-05 42.2 6.1 26 96-121 6-31 (258)
496 PRK07578 short chain dehydroge 87.7 1.9 4.1E-05 39.0 7.1 23 97-119 1-23 (199)
497 PF03949 Malic_M: Malic enzyme 87.7 2 4.3E-05 41.6 7.5 132 96-251 25-171 (255)
498 TIGR01327 PGDH D-3-phosphoglyc 87.7 1.3 2.7E-05 47.4 6.7 62 97-179 139-200 (525)
499 PRK09424 pntA NAD(P) transhydr 87.7 3.4 7.3E-05 44.0 9.8 45 94-149 163-207 (509)
500 KOG2015 NEDD8-activating compl 87.7 0.56 1.2E-05 46.6 3.7 48 73-122 18-65 (422)
No 1
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=1.2e-96 Score=750.65 Aligned_cols=400 Identities=83% Similarity=1.280 Sum_probs=376.0
Q ss_pred eeeecCCC-----ccccceeecccccccccccCcccccccCCCCCCCCCeeEEEeccc-ccccccccCCCcCCCCCccee
Q 015501 4 VAQLSPSS-----YTETTRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPTISCSVNQV-QAPVAVEQDDPKSKTNDCYGV 77 (405)
Q Consensus 4 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 77 (405)
||+++.+. .+++++++++|+++++++++.|+|+.|+|++|.++++|+|||+++ |+|++|++++++.| ++||||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (444)
T PLN00112 3 VAELSTPKVTSPFLNTSSRLRSSQLGLSRTHLSNHFRRALLPRRRATNARISCSVNQASQAPAAVQEKGVKTK-KECYGV 81 (444)
T ss_pred chhccccccccccccchhhccccccccccccccccccccccccccccccceeeccccccCCCccccccccccC-CCceEE
Confidence 45666442 557888999999999999999999999999999999999999999 88888888887666 999999
Q ss_pred eEEeeccchhHhhhhccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc
Q 015501 78 FCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL 157 (405)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~ 157 (405)
||++||+++|+..++|+++.||+||||+|+||+++++.|+.+++++.|+++.++|+++|+++++++|++|||+|+.+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~ 161 (444)
T PLN00112 82 FCLTYDLKAEEETKSWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLL 161 (444)
T ss_pred EEEEEecccchhhhcCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999779999999999999999998888988888899999999999999999987776
Q ss_pred ceEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCC
Q 015501 158 REVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP 237 (405)
Q Consensus 158 ~~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~ 237 (405)
.++++++++|++++|||+||+++|.||+|||+|.|++..|++|++++++.|+++++|+++||++|||+|+||+++++.++
T Consensus 162 ~~v~i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg 241 (444)
T PLN00112 162 REVSIGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAP 241 (444)
T ss_pred CceEEecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcC
Confidence 67888889999999999999999999999999999999999999999999999545999999999999999999999998
Q ss_pred CCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHh
Q 015501 238 SIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317 (405)
Q Consensus 238 ~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~ 317 (405)
.+|+|+||+||.||++||+++||+++||++++|++++||||||++|||+||+++|+|+|+.+++.+.+|+.++|.+++++
T Consensus 242 ~~~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~ 321 (444)
T PLN00112 242 NIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQK 321 (444)
T ss_pred CCCcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEECCccHHHhhccccchHHHHHHHHHH
Confidence 88789999999999999999999999999999987799999999999999999999999999987777888999999999
Q ss_pred hhHHHHHhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHH
Q 015501 318 RGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDY 397 (405)
Q Consensus 318 ~~~~ii~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~ 397 (405)
+|++|+++||+++|+++|.+++++|++|+.|+|+++|+|+|++++|++||+++|++||+||++|++|+++++++++|+++
T Consensus 322 ~g~~Ii~~kG~t~~~s~a~ai~~~I~ail~~~d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el~L~~~ 401 (444)
T PLN00112 322 RGGVLIKKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDVEIDDY 401 (444)
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCCCCCHH
Confidence 99999999999999899999999999999888999999999999994599989999999999999999999956999999
Q ss_pred HHHHHhh
Q 015501 398 LRKRIAK 404 (405)
Q Consensus 398 E~~~l~~ 404 (405)
|+++|++
T Consensus 402 E~~~l~~ 408 (444)
T PLN00112 402 LRERIKK 408 (444)
T ss_pred HHHHHHH
Confidence 9999975
No 2
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=1.2e-82 Score=639.32 Aligned_cols=348 Identities=79% Similarity=1.259 Sum_probs=325.0
Q ss_pred ccccccccccCCCcCCCCCcceeeEEeeccchhHh--hhhccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEe
Q 015501 55 QVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEE--TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132 (405)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l 132 (405)
..|+|+.|.+.+++.. .+||||||++||+++|.+ .++|+++.||+||||+|+||+++|+.|+.++++++|++|.|+|
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L 80 (387)
T TIGR01757 2 AKQVQAGVATAEAAAT-KKCYGVFCLSYDLKNEDKSLTKSWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKL 80 (387)
T ss_pred chhhhcccchhhHHhh-hcceEEEEEEeecCcchhHHHhcCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEE
Confidence 3588888666455553 799999999999999988 5788899999999977999999999999999999888999999
Q ss_pred ccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhc
Q 015501 133 LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA 212 (405)
Q Consensus 133 ~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a 212 (405)
+|+|+++++++|++|||+|+.+++..++++++++|++++|||+||+++|.||+||++|.+++..|++|++++++.|++++
T Consensus 81 ~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a 160 (387)
T TIGR01757 81 LGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVA 160 (387)
T ss_pred eccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999866666788888999999999999999999999999999999999999999999999987
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceE
Q 015501 213 SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI 292 (405)
Q Consensus 213 ~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I 292 (405)
+|++++|++|||+|+||+++++.++.+|+|+||+||.||++||+++||+++++++++|++++||||||++|||+||+++|
T Consensus 161 ~~~~iviVVsNPvDv~t~v~~k~sg~~~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a~V 240 (387)
T TIGR01757 161 SKNCKVLVVGNPCNTNALIAMKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKI 240 (387)
T ss_pred CCCeEEEEcCCcHHHHHHHHHHHcCCCcccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCCcEEecceeeEE
Confidence 79999999999999999999999987778999999999999999999999999999997679999999999999999999
Q ss_pred cCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcc-cCCCCc
Q 015501 293 NGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNP-YGIAED 371 (405)
Q Consensus 293 ~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~-ygi~~d 371 (405)
+|+|+.+++.+.+|+.++|.++++++|++|+++||+++|+++|.+++++|++|+.|+|+++|+|+|++++| + ||+++|
T Consensus 241 ~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~KG~t~~~s~a~ai~~~i~ai~~g~d~~~il~vsv~~~G-e~YGi~~g 319 (387)
T TIGR01757 241 GGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKWGRSSAASTAVSIADAIKSLVVPTPEGDWFSTGVYTDG-NPYGIAEG 319 (387)
T ss_pred CCEEhHHhcccccchHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCC-cccCCCCC
Confidence 99999998876667788999999999999999999999988999999999999988899999999999999 6 999899
Q ss_pred eEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 372 IVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 372 v~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++||+||++|++|+++++.+++|+++|+++|++
T Consensus 320 v~~S~Pvvig~~Gv~~Iv~~l~L~~~E~~~l~~ 352 (387)
T TIGR01757 320 LVFSMPCRSKGDGDYELATDVSMDDFLRERIRK 352 (387)
T ss_pred EEEEEEEEEeCCEEEEECCCCCCCHHHHHHHHH
Confidence 999999999999999997459999999999975
No 3
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-69 Score=535.92 Aligned_cols=309 Identities=54% Similarity=0.879 Sum_probs=281.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (405)
|++|+||+||||+|+||+++++.|+.+++++.++++.|.|+|+..+.++++|+++||+|+.+++..+++++.++|++++|
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 57799999999779999999999999999985566778887776667789999999999986665567888899999999
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeecchhh
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LD 251 (405)
||+||+++|.|++||++|.+++..|++|++++++.|+++++|++++|++|||+|++|+++++.+|++|+ |+||+ |.||
T Consensus 81 aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LD 159 (326)
T PRK05442 81 ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAM-TRLD 159 (326)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEee-eHHH
Confidence 999999999999999999999999999999999999999768999999999999999999999978886 88999 9999
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchH
Q 015501 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331 (405)
Q Consensus 252 s~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~ 331 (405)
++||+++||+++++++++|++++||||||++|||+||+++|+|+|+.+++.+.+|..+++.+++++++++|++.||+++|
T Consensus 160 s~R~r~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~ 239 (326)
T PRK05442 160 HNRALSQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEARGASSA 239 (326)
T ss_pred HHHHHHHHHHHhCcChHHeEEeEEEECCcCceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCcCCccH
Confidence 99999999999999999999866799999999999999999999999988766677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 332 ~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+..+..+++++++|+.+.++++++|+|++++| +||+|+|++||+||++| +|+++++.+++|+++|+++|++
T Consensus 240 ~~a~~~~~~iv~ail~~~~~~~i~~~sv~~~g-~ygi~~~v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l~~ 310 (326)
T PRK05442 240 ASAANAAIDHVRDWVLGTPEGDWVSMGVPSDG-SYGIPEGLIFGFPVTCE-NGEYEIVQGLEIDDFSREKIDA 310 (326)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEEEecC-ccCCcCCeEEEEEEEEc-CcEEEEeCCCCCCHHHHHHHHH
Confidence 75444478888888843228999999999999 89999999999999999 9999998679999999999985
No 4
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=4.9e-69 Score=532.35 Aligned_cols=309 Identities=58% Similarity=0.919 Sum_probs=280.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
++|.||+||||+|+||+++++.|+.+++++.+.++.|.|+|+..+.++++|+++||+|+.+++..+++++.++|++++||
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~da 80 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDV 80 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCC
Confidence 46899999997799999999999999998855566777776655567799999999999866655677878999999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCC-CeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeecchhh
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR-NVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p-~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LD 251 (405)
|+||+++|.||+|||+|.+++..|++|++++++.|+++| | ++++|++|||+|+||+++++.++++|+ |+||+ |.||
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~-~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LD 158 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVA-KKDVKVLVVGNPANTNALIASKNAPDIPPKNFSAM-TRLD 158 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHH
Confidence 999999999999999999999999999999999999997 7 999999999999999999999956776 88987 9999
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchH
Q 015501 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331 (405)
Q Consensus 252 s~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~ 331 (405)
|+|||++||+++|+++++|++.+||||||++|||+||+++|+|+|+.+++.+++|+.+++.+++++++++|++.||+++|
T Consensus 159 s~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~ 238 (323)
T TIGR01759 159 HNRAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARGASSA 238 (323)
T ss_pred HHHHHHHHHHHhCcChHHeEEeEEEecCCCceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhccCCcch
Confidence 99999999999999999998778999999999999999999999999988765566789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 332 ~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++.|.++++++++|+...++++++|+|++++|++||+|+|+|||+||++|++|+++++++++|+++|+++|++
T Consensus 239 ~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l~L~~~E~~~l~~ 311 (323)
T TIGR01759 239 ASAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGLPLDDFVRGKLDA 311 (323)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHH
Confidence 8788999999999994322399999999999956999889999999999999999999669999999999975
No 5
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=9.6e-69 Score=522.40 Aligned_cols=293 Identities=28% Similarity=0.424 Sum_probs=267.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-CcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~~eal~dADi 175 (405)
+||+|||| |+||+++++.|+..++.. ++.| +|+++++++|.++||.|+.+.....+.++. ++|++++|||+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~---el~L----iDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDi 72 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGS---ELVL----IDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADI 72 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccc---eEEE----EEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCE
Confidence 59999996 999999999997666543 3554 566689999999999999866656677766 67999999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecchhhHHHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRA 255 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs~R~ 255 (405)
||+++|.||||||+|.||+..|++||+++++.+.++| |+++++++|||+|+|||+++|.++..++|+||++|.||++||
T Consensus 73 VvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNPvD~~ty~~~k~sg~p~~rvig~gt~LDsaR~ 151 (313)
T COG0039 73 VVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLDSARF 151 (313)
T ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCcHHHHHHHHHHhcCCCccceecccchHHHHHH
Confidence 9999999999999999999999999999999999997 999999999999999999999996543588999999999999
Q ss_pred HHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhh-hccccHHHHHHHHHhhhHHHHHhcCCchHHHH
Q 015501 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK-DHKWLEEGFTETIQKRGGLLIKKWGRSSAAST 334 (405)
Q Consensus 256 ~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~-~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s~ 334 (405)
+++||+++|+++++|++ +|+||||++|||+||+++|+|+|+.+++. ++.|..+++.+.|+++|++|++.||..+++++
T Consensus 152 ~~~lae~~~v~~~~V~~-~ViGeHGdt~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~~t~~~~ 230 (313)
T COG0039 152 RTFLAEKLGVSPKDVHA-YVIGEHGDTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGAGTYYGP 230 (313)
T ss_pred HHHHHHHhCCChhHcee-eEeccCCCceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHccCccchhhH
Confidence 99999999999999996 89999999999999999999999999987 56678899999999999999999987455569
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 335 A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|.+++++.++|+ .|+++|+|++++++| +|| ++|+|||+||++|++|++++++ ++|+++||++|++
T Consensus 231 A~a~a~~~~ail--~d~~~vl~~s~~l~G-~yg-~~dv~~gvP~~lg~~Gv~~iie-~~l~~~E~~~l~~ 295 (313)
T COG0039 231 AAALARMVEAIL--RDEKRVLPVSVYLDG-EYG-VEDVYFGVPAVLGKNGVEEILE-LLLSDDEQEKLDK 295 (313)
T ss_pred HHHHHHHHHHHH--cCCCceEEEEEeecC-ccC-cCCeEEEeeEEEcCCCcEEEec-CCCCHHHHHHHHH
Confidence 999999999999 688999999999999 799 4899999999999999999995 9999999999975
No 6
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=6.8e-68 Score=539.51 Aligned_cols=312 Identities=30% Similarity=0.444 Sum_probs=286.8
Q ss_pred chhHh-hhhccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe
Q 015501 85 KAEEE-TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG 163 (405)
Q Consensus 85 ~~~~~-~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~ 163 (405)
.+|++ .+++++|.+|+|+||+|++|+++++.|+++++||.|++|.|+|+|++.+.++++|++|||+|++++++..++++
T Consensus 111 ~~e~~~~~~~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~ 190 (452)
T cd05295 111 EKEEEELRSKINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT 190 (452)
T ss_pred HHHHHHHhcCCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE
Confidence 44555 46788899999999999999999999999999999999999998887788999999999999998887778888
Q ss_pred cCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCC--CeEEEEeCCchhHHHHHHHHHCCCCCC
Q 015501 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR--NVKVIVVGNPCNTNALICLKNAPSIPA 241 (405)
Q Consensus 164 ~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p--~a~vIvvtNP~d~~t~~~~k~s~~~~~ 241 (405)
+++|++++|||+||+++|.||+|||+|.|++..|++|++++++.|+++| | ++++|++|||+|++|+++++++|++|+
T Consensus 191 ~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a-~~~~~VlVv~tNPvD~~t~i~~k~apgiP~ 269 (452)
T cd05295 191 TDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNA-KEDVKVIVAGRTFLNLKTSILIKYAPSIPR 269 (452)
T ss_pred ECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEeCCcHHHHHHHHHHHcCCCCH
Confidence 9999999999999999999999999999999999999999999999998 7 788999999999999999999988997
Q ss_pred -CceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcC------------cchHhhhhhccccH
Q 015501 242 -KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING------------LPVKEIIKDHKWLE 308 (405)
Q Consensus 242 -k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G------------~p~~~~~~~~~~~~ 308 (405)
|+||++| ||++|++++||+++||++++|++++||||||++|||+||+++|+| +|+.+++.+++|+.
T Consensus 270 ~rVig~gt-lds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~ 348 (452)
T cd05295 270 KNIIAVAR-LQENRAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWIN 348 (452)
T ss_pred HHEEEecc-hHHHHHHHHHHHHhCcCHHHceeeEEEEccCCceeeeeeEEEEcccccccccccccCccHHHHhcchhhhH
Confidence 7788888 779999999999999999999888999999999999999999988 99999987777888
Q ss_pred HHHHHHHHhhhHHHHHhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceee
Q 015501 309 EGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEL 388 (405)
Q Consensus 309 ~el~~~v~~~~~~ii~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~i 388 (405)
+++.+.++++++ .++|. +++++|.++++++++|+.++++++|+|+||+++| +||+|+|++||+||+++++|++.+
T Consensus 349 ~~~~~~v~~rg~---~rkgs-T~~siA~A~~~iv~ail~~t~~~~ilsvsv~sdG-~YGip~gv~~S~Pviig~~Gve~V 423 (452)
T cd05295 349 GEFVATLKSLSS---SLNHE-AAISPAHAIATTLSYWYHGSPPGEIFSLGVISEG-WYGIPEGIVFSMPVKFQNGSWEVV 423 (452)
T ss_pred HHHHHHHHHHHH---hccCC-hHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeecc-ccCCcCCEEEEEEEEEeCCeEEEE
Confidence 899999999988 45554 4556999999999999976556899999999999 899999999999999999999887
Q ss_pred ecCCCCCHHHHHHHhh
Q 015501 389 VKDVIFDDYLRKRIAK 404 (405)
Q Consensus 389 v~~~~L~~~E~~~l~~ 404 (405)
. +++|+++|+++|++
T Consensus 424 ~-~L~L~e~E~~kL~~ 438 (452)
T cd05295 424 T-DLELSEILREVLKR 438 (452)
T ss_pred e-CCCCCHHHHHHHHH
Confidence 7 69999999999975
No 7
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.8e-68 Score=491.84 Aligned_cols=310 Identities=50% Similarity=0.751 Sum_probs=302.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (405)
|+++.+|.|.||+|+||+++++.++.+.+||+|||+.|+|+|+.+..+.|+|+.|+|+|+++|++..+..+++..++|+|
T Consensus 1 ~~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkd 80 (332)
T KOG1496|consen 1 MKEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKD 80 (332)
T ss_pred CCCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhHHHhhhcccChhhhhcc
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecchhhH
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs 252 (405)
.|+.|+.|+.||++||+|.|++..|.+|+++.++++++|++|+++|++++||+|+++.++.+++|.+|.++|...|+||.
T Consensus 81 v~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~lTRLDh 160 (332)
T KOG1496|consen 81 VDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSALTRLDH 160 (332)
T ss_pred CcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhhhhhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcC----cchHhhhhhccccHHHHHHHHHhhhHHHHHhcCC
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING----LPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGR 328 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G----~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~ 328 (405)
+|+..|||.++||+.++|++++|||||+.+|+|++.+++|++ +|+.+.+.|+.|+..+|.+.|++||..+|+.|+.
T Consensus 161 NRA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ark~ 240 (332)
T KOG1496|consen 161 NRALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKARKL 240 (332)
T ss_pred hhHHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhhhhh
Confidence 999999999999999999999999999999999999999986 8999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 329 ~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++++|+|.+++|+|++|+.|+++++|++++|+++| .||+|+|..||+||++. +|-|+++++++++|+.|+++..
T Consensus 241 SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDG-sYgip~gli~SfPv~~k-~g~wkiVqgl~iddf~r~km~~ 314 (332)
T KOG1496|consen 241 SSAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDG-SYGIPDGLIFSFPVTIK-NGDWKIVQGLPIDDFSREKMDL 314 (332)
T ss_pred hhhhhHHHhHhhhhhheecCCCCccEEEEeeecCC-CCCCCCCeEEEcceEec-CCceEEEcCcchhHHHHHhhhh
Confidence 99999999999999999999999999999999999 59999999999999996 5999999999999999999863
No 8
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=4.1e-66 Score=508.70 Aligned_cols=290 Identities=22% Similarity=0.302 Sum_probs=262.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc--ceEEEecCcccccCCCcE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINPYELFEDAEW 175 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~--~~v~i~~~~~eal~dADi 175 (405)
||+|||| |+||+++|+.|+..+++++ +.| +|+++++++|+++||.|+. ++. .++++++++|++++|||+
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~e---lvL----~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~y~~~~~aDi 71 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSE---IVL----IDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGDYDDCADADI 71 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCE---EEE----EeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECCHHHhCCCCE
Confidence 7999996 9999999999999998764 655 5677889999999999987 433 357777789999999999
Q ss_pred EEEeCCcCCCCCCc--hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecchhhHH
Q 015501 176 ALLIGAKPRGPGME--RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDEN 253 (405)
Q Consensus 176 VIi~~g~~~k~g~~--r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs~ 253 (405)
||+++|.||+|||+ |+|++..|++|++++++.|++++ |++++|++|||+|+||++++|.++..++|+||+||.|||+
T Consensus 72 vvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPvDv~t~~~~k~sg~p~~rviG~gt~LDs~ 150 (307)
T cd05290 72 IVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPLDIAVYIAATEFDYPANKVIGTGTMLDTA 150 (307)
T ss_pred EEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcHHHHHHHHHHHhCcChhheecccchHHHH
Confidence 99999999999999 69999999999999999999997 9999999999999999999999954445999999999999
Q ss_pred HHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhh---ccccHHHHHHHHHhhhHHHHHhcCCch
Q 015501 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD---HKWLEEGFTETIQKRGGLLIKKWGRSS 330 (405)
Q Consensus 254 R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~---~~~~~~el~~~v~~~~~~ii~~~G~~~ 330 (405)
||+++||+++|+++++|++ +||||||++|||+||+++|+|+|+.+++.. +.+..+++.++++++|++|++.||.++
T Consensus 151 R~~~~la~~l~v~~~~V~~-~ViGeHGds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~KG~t~ 229 (307)
T cd05290 151 RLRRIVADKYGVDPKNVTG-YVLGEHGSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRKGWTN 229 (307)
T ss_pred HHHHHHHHHhCCCcccEEE-EEEecCCCceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHccCeeh
Confidence 9999999999999999997 899999999999999999999999988742 233467899999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 331 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 331 ~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|+ .|.++++++.+|+ .|++.++|+|++++| +|| ++|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 230 ~~-ia~a~~~ii~ail--~d~~~v~~vsv~~~G-~yg-~~~v~~svP~~ig~~Gv~~i~~-l~L~~~E~~~l~~ 297 (307)
T cd05290 230 AG-IAKSASRLIKAIL--LDERSILPVCTLLSG-EYG-LSDVALSLPTVIGAKGIERVLE-IPLDEWELEKLHK 297 (307)
T ss_pred HH-HHHHHHHHHHHHH--hCCCeEEEEEEeeCC-ccC-CCCEEEEEEEEEeCCCceEecC-CCCCHHHHHHHHH
Confidence 86 5678888888887 688999999999999 799 5899999999999999999995 9999999999985
No 9
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.9e-66 Score=513.13 Aligned_cols=303 Identities=51% Similarity=0.783 Sum_probs=275.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
.||+||||+|+||+++++.|+.+++++++.++.|+|+|++.+.++++|+++||.|+.+++...++++.++|++++|||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 48999998899999999999999999876677788866654448899999999999866665667778899999999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHHHH
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~R~ 255 (405)
|+++|.|++||++|.+++..|++|++++++.|+++|+|++++|++|||+|+||+++++.++.+|+ |+||+ |.|||+||
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~vig~-t~LDs~R~ 159 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKNAPNLPPKNFTAL-TRLDHNRA 159 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHHHHHH
Confidence 99999999999999999999999999999999999669999999999999999999999965676 77766 99999999
Q ss_pred HHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhh---hhccccHHHHHHHHHhhhHHHHHhcCCchHH
Q 015501 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII---KDHKWLEEGFTETIQKRGGLLIKKWGRSSAA 332 (405)
Q Consensus 256 ~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~---~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~ 332 (405)
|++||++++++|++|++++||||||++|+|+||+++|+|+|+.++. .+++|..+++.+++++++++|++.||+++|+
T Consensus 160 r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~kg~t~~~ 239 (323)
T cd00704 160 KAQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKRGASSAA 239 (323)
T ss_pred HHHHHHHhCcCHHHceeeeEEecccCceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhccCcchhH
Confidence 9999999999999998778999999999999999999999998874 3345667899999999999999999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCC--cEEEEeeeeCCccc-CCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 333 STAVSIVDAMKSLVTPTPEG--DWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 333 s~A~~i~~ai~~~~~~~~~~--~i~~~sv~~~G~~y-gi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+.|.++++++++|+. |++ +++|||++++| +| |+|+|++||+||++|++||++++ +++|+++|+++|++
T Consensus 240 ~~a~a~~~iv~ail~--~~~~~~v~~~s~~~~g-~y~gi~~~v~~s~P~~ig~~Gv~~v~-~l~L~~~E~~~l~~ 310 (323)
T cd00704 240 SAAKAIADHVKDWLF--GTPPGEIVSMGVYSPG-NPYGIPPGIVFSFPCTCKGGGWHVVE-DLKLNDWLREKLKA 310 (323)
T ss_pred HHHHHHHHHHHHHHh--CCCCCcEEEEEEEeCC-ccCCCCCceEEEEEEEEcCCEEEEec-CCCCCHHHHHHHHH
Confidence 789999999999994 555 99999999999 79 99999999999999999999988 59999999999985
No 10
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=8.5e-66 Score=509.55 Aligned_cols=307 Identities=59% Similarity=0.936 Sum_probs=279.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+|+||+||||+|+||+++++.|+.+++++.++++.|+|+|+..+.++++|+++||+|+.+++..++++++++|++++|||
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD 80 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDAD 80 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCC
Confidence 47899999977999999999999999998556778888777666677999999999998666556788889999999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~ 253 (405)
+||+++|.|++||++|.+++..|++|++++++.|++++.|++++|++|||+|+||+++++.++++|+ |+||+ |.||+.
T Consensus 81 ivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~-t~LDs~ 159 (322)
T cd01338 81 WALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAM-TRLDHN 159 (322)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEe-hHHHHH
Confidence 9999999999999999999999999999999999999734999999999999999999999966886 88999 999999
Q ss_pred HHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchHHH
Q 015501 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333 (405)
Q Consensus 254 R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s 333 (405)
||++++|+++|+++++|++++|||+||++++|+||+++++|+|+.+++.+.+|..+++.+++++++++|++.||+++|+.
T Consensus 160 Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~~~ 239 (322)
T cd01338 160 RAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARGASSAAS 239 (322)
T ss_pred HHHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCcCCccHHH
Confidence 99999999999999999986779999999999999999999999988776667688999999999999999999999975
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 334 ~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.+.++++++++|+.+.+++.++|+|++++| +||+|+|++||+||++|++|+++++ +++|+++|+++|++
T Consensus 240 ~a~a~~~iv~ail~~~~~~~i~~~sv~~~g-~yg~~~~v~~s~P~~ig~~Gv~~i~-~l~L~~~E~~~l~~ 308 (322)
T cd01338 240 AANAAIDHMRDWVLGTPEGDWFSMAVPSDG-SYGIPEGLIFSFPVRSKGGGYEIVE-GLEIDDFAREKIDA 308 (322)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEEEccC-ccCCCCCeEEEEEEEEeCCEEEEEe-CCCCCHHHHHHHHH
Confidence 557999999999954333799999999999 8999999999999999999999998 59999999999985
No 11
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=5.5e-65 Score=504.16 Aligned_cols=305 Identities=48% Similarity=0.734 Sum_probs=273.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVI 177 (405)
||+||||+|+||+++++.|+.+++++.++++.|+|+|++.+.++++|+++||.|+.+++...+..++++|++++|||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 69999988999999999999999986434567777777666667999999999998655555544457799999999999
Q ss_pred EeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecchhhHHHHHH
Q 015501 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKC 257 (405)
Q Consensus 178 i~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs~R~~~ 257 (405)
+++|.|+++|++|.+++..|++|++++++.|+++|+|++++|++|||+|+||+++++.++++|+++||+||.|||+|||+
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~gt~LDs~R~r~ 160 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALA 160 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEeeehHHHHHHH
Confidence 99999999999999999999999999999999995599999999999999999999999888889999999999999999
Q ss_pred HHHHHhCCCCCCceeEEEEeecCCCcccccccceEc-C---cchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchHHH
Q 015501 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN-G---LPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333 (405)
Q Consensus 258 ~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~-G---~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s 333 (405)
+||+++|+++++|++++||||||++|||+||+++|+ | +|+.+++.+.+|+.+++.+++++++++|++.+|++...+
T Consensus 161 ~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~~t~~~ 240 (324)
T TIGR01758 161 QVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARKLSSALS 240 (324)
T ss_pred HHHHHhCCChhhceEeEEEECCCCCcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhccCCCHHHH
Confidence 999999999999987799999999999999999999 9 999998876556678999999999999999777555556
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcc-cCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNP-YGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 334 ~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~-ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+|.++++++++|+.+.|++.++|+|++++| + ||+|+|++||+||++|++|+ +++.+++|+++|+++|++
T Consensus 241 ia~~~~~i~~ai~~~~~~~~i~~vs~~~~g-~~yg~~~~v~~s~P~~ig~g~~-~~i~el~L~~~E~~~l~~ 310 (324)
T TIGR01758 241 AAKAAVDQMHDWVLGTPEGTFVSMGVYSDG-SPYGVPKGLIFSFPVTCKNGEW-KIVEGLCVDDSSRKKLAL 310 (324)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEeecCC-cccCCCCceEEEEEEEEcCCeE-EEecCCCCCHHHHHHHHH
Confidence 999999999999987789999999999999 8 99988999999999995555 555469999999999985
No 12
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=1.1e-64 Score=497.37 Aligned_cols=287 Identities=23% Similarity=0.336 Sum_probs=262.6
Q ss_pred EEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEEEeC
Q 015501 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIG 180 (405)
Q Consensus 101 IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVIi~~ 180 (405)
|||| |+||+++++.|+..+++++ |.| +|+++++++|+++||+|+.+.+..+++++.++|++++|||+||+++
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~e---l~L----~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVita 72 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADE---IVL----IDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITA 72 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCE---EEE----EeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECC
Confidence 7895 9999999999999999864 655 5677889999999999998555556788888999999999999999
Q ss_pred CcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHHHHHHHH
Q 015501 181 AKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKCQL 259 (405)
Q Consensus 181 g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~R~~~~l 259 (405)
|.||+|||+|.|++.+|++|++++++.|++++ |++++|++|||+|++|+++++++ ++|+ |+||+||.||++|+++++
T Consensus 73 g~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsNP~d~~t~~~~~~s-g~p~~~viG~gt~LDs~R~~~~l 150 (299)
T TIGR01771 73 GAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVATNPVDILTYVAWKLS-GFPKNRVIGSGTVLDTARLRYLL 150 (299)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHh-CCCHHHEEeccchHHHHHHHHHH
Confidence 99999999999999999999999999999996 99999999999999999999998 5776 889999999999999999
Q ss_pred HHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhc----cccHHHHHHHHHhhhHHHHHhcCCchHHHHH
Q 015501 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH----KWLEEGFTETIQKRGGLLIKKWGRSSAASTA 335 (405)
Q Consensus 260 A~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~----~~~~~el~~~v~~~~~~ii~~~G~~~~~s~A 335 (405)
|+++|+++++|++ +||||||++|||+||+++|+|+|+.+++.+. ++..+++.++++++|+++++.||+++|+ +|
T Consensus 151 a~~l~v~~~~V~~-~v~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kG~t~~~-~a 228 (299)
T TIGR01771 151 AEKLGVDPQSVHA-YIIGEHGDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRKGATYYG-IG 228 (299)
T ss_pred HHHhCcCcCeEEE-EEEecCCCceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcCCeeeHH-HH
Confidence 9999999999996 8999999999999999999999999887541 3346789999999999999999999886 67
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 336 VSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 336 ~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.++++++++|+ .|+++++|+|++++| +||+ +|+|||+||+||++|++++++ ++|+++|+++|++
T Consensus 229 ~a~~~~i~ail--~d~~~v~~~s~~~~g-~yg~-~~~~~s~P~~ig~~Gv~~i~~-l~L~~~E~~~l~~ 292 (299)
T TIGR01771 229 MAVARIVEAIL--HDENRVLPVSAYLDG-EYGI-KDVYIGVPAVLGRNGVEEIIE-LPLSDEEKEAFQK 292 (299)
T ss_pred HHHHHHHHHHH--cCCCcEEEEEEEecc-cCCC-CCEEEEEEEEEeCCeeEEEcc-CCCCHHHHHHHHH
Confidence 78999999988 689999999999999 7998 589999999999999999995 9999999999985
No 13
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=8.8e-64 Score=493.39 Aligned_cols=293 Identities=20% Similarity=0.309 Sum_probs=262.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dA 173 (405)
..+||+|||| |+||+++++.|+.+++..+ +.| +|+++++++|+++||+|+. ++.....+. +++|++++||
T Consensus 2 ~~~Ki~IiGa-G~VG~~~a~~l~~~~~~~e---l~L----iD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~~~~a 72 (312)
T cd05293 2 PRNKVTVVGV-GQVGMACAISILAKGLADE---LVL----VDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSVTANS 72 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCE---EEE----EeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHHhCCC
Confidence 3579999995 9999999999999988753 555 5666789999999999998 443322443 4789999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs 252 (405)
|+||+++|.+++|||+|.+++.+|++|++++++.|++++ |++++|++|||+|++|+++++++ ++|+ |+||+||.||+
T Consensus 73 divvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsNP~d~~t~~~~k~s-g~p~~~viG~gt~Ld~ 150 (312)
T cd05293 73 KVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYS-PNAILLVVSNPVDIMTYVAWKLS-GLPKHRVIGSGCNLDS 150 (312)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEccChHHHHHHHHHHHh-CCCHHHEEecCchHHH
Confidence 999999999999999999999999999999999999996 99999999999999999999998 5775 88999999999
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhh-----ccccHHHHHHHHHhhhHHHHHhcC
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD-----HKWLEEGFTETIQKRGGLLIKKWG 327 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~-----~~~~~~el~~~v~~~~~~ii~~~G 327 (405)
+|++++||+++++++++|++ +||||||++|||+||+++|+|+|+.+++.. ++...+++.++++++|++|++.||
T Consensus 151 ~R~~~~la~~l~v~~~~v~~-~v~GeHG~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg 229 (312)
T cd05293 151 ARFRYLIAERLGVAPSSVHG-WIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKG 229 (312)
T ss_pred HHHHHHHHHHhCCChhhEEE-EEeecCCCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999996 899999999999999999999999988632 111247899999999999999999
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 328 RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 328 ~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.++|+ +|.++++++++|+ +|++.++|++++++| +||+|+|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 230 ~t~~~-~a~a~~~ii~ail--~d~~~~~~vsv~~~g-~yg~~~d~~~svP~~ig~~Gi~~i~~-l~L~~~E~~~l~~ 301 (312)
T cd05293 230 YTSWA-IGLSVADLVDAIL--RNTGRVHSVSTLVKG-LHGIEDEVFLSLPCILGENGITHVIK-QPLTEEEQEKLQK 301 (312)
T ss_pred CchHH-HHHHHHHHHHHHH--cCCCeEEEEEEEeCC-ccCCCCCeEEEEeEEEeCCceEEEec-CCCCHHHHHHHHH
Confidence 99886 6788888899888 678999999999999 79999999999999999999999995 9999999999985
No 14
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=4.9e-64 Score=501.01 Aligned_cols=291 Identities=21% Similarity=0.320 Sum_probs=262.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-CcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~~eal~dADi 175 (405)
+||+|||| |+||+++++.|+..+++++ +.| +|+++++++|+++||+|+. ++...+.++. ++|++++|||+
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~e---l~L----iDi~~~~~~g~a~DL~~~~-~~~~~~~i~~~~dy~~~~daDi 108 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADE---LAL----VDVNPDKLRGEMLDLQHAA-AFLPRTKILASTDYAVTAGSDL 108 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCE---EEE----EeCCCchhhHHHHHHHhhh-hcCCCCEEEeCCCHHHhCCCCE
Confidence 79999995 9999999999999998764 655 5667789999999999998 4544356653 68999999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~R 254 (405)
||+++|.|++|||+|.|++.+|++|++++++.|+++| |++|+|++|||+|++|+++++.++ +|+ |+||+||.||++|
T Consensus 109 VVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~-p~~ivivvtNPvdv~t~~~~k~sg-~p~~rviG~gt~LDs~R 186 (350)
T PLN02602 109 CIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYS-PDTILLIVSNPVDVLTYVAWKLSG-FPANRVIGSGTNLDSSR 186 (350)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCchHHHHHHHHHHhC-CCHHHEEeecchHHHHH
Confidence 9999999999999999999999999999999999997 999999999999999999999995 776 8899999999999
Q ss_pred HHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhc--cc---cHHHHHHHHHhhhHHHHHhcCCc
Q 015501 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KW---LEEGFTETIQKRGGLLIKKWGRS 329 (405)
Q Consensus 255 ~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~--~~---~~~el~~~v~~~~~~ii~~~G~~ 329 (405)
++++||+++|+++++|++ +||||||++|||+||+++|+|+|+.+++.+. .+ ..+++.+++++++++|++.||.+
T Consensus 187 ~r~~lA~~l~v~~~~V~~-~ViGeHGds~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~KG~t 265 (350)
T PLN02602 187 FRFLIADHLDVNAQDVQA-YIVGEHGDSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLKGYT 265 (350)
T ss_pred HHHHHHHHhCCCccceee-eEEecCCCceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999997 8999999999999999999999999986542 11 14678999999999999999998
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCC-CceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 330 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIA-EDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 330 ~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~-~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+|+ +|.++++++.+++ .|++.++|+|++++| +||+| +|+|||+||++|++|++++++ ++|+++|+++|++
T Consensus 266 ~~g-ia~a~a~ii~ail--~d~~~v~~vsv~~~g-~Yg~~~~~v~~s~P~~ig~~Gi~~i~~-l~L~~~E~~~l~~ 336 (350)
T PLN02602 266 SWA-IGYSVASLVRSLL--RDQRRIHPVSVLAKG-FHGIDEGDVFLSLPAQLGRNGVLGVVN-VHLTDEEAERLRK 336 (350)
T ss_pred HHH-HHHHHHHHHHHHH--hcCCCeEEEEEeccc-ccCCCCCCcEEEEEEEEeCCeeEEEec-CCCCHHHHHHHHH
Confidence 875 6777778888877 689999999999999 89994 799999999999999999985 9999999999985
No 15
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=1.2e-63 Score=493.29 Aligned_cols=293 Identities=22% Similarity=0.363 Sum_probs=265.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
+..+||+|||| |+||+++++.|+..+++++ |.| +|+++++++|+++||+|+. ++..++++++++|++++||
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~e---l~L----~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~~~~~~a 74 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADE---LVI----IDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDYSDCKDA 74 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCE---EEE----EeCCCchhHHHHHHHHhhc-cccCCeEEEeCCHHHhCCC
Confidence 34689999996 9999999999999998753 555 5677889999999999998 5545677888899999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs 252 (405)
|+||+++|.||+|||+|.|++..|++|++++++.+++++ |++|+|++|||+|++|+++++++ ++|+ |+||+||.||+
T Consensus 75 divIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP~d~~~~~~~k~s-g~p~~~viG~gt~LDs 152 (315)
T PRK00066 75 DLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNPVDILTYATWKLS-GFPKERVIGSGTSLDS 152 (315)
T ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCcHHHHHHHHHHHh-CCCHHHEeecCchHHH
Confidence 999999999999999999999999999999999999997 99999999999999999999998 5776 88999999999
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcccc----HHHHHHHHHhhhHHHHHhcCC
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKRGGLLIKKWGR 328 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~----~~el~~~v~~~~~~ii~~~G~ 328 (405)
+|+++++|+++|+++++|++ +||||||++|+|+||+++|+|+|+.+++.+..|. .+++.++++++++++++.||+
T Consensus 153 ~R~~~~la~~l~v~~~~V~~-~viGeHG~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kg~ 231 (315)
T PRK00066 153 ARFRYMLSEKLDVDPRSVHA-YIIGEHGDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKKGA 231 (315)
T ss_pred HHHHHHHHHHhCCCcccEEE-EEEecCCCcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 99999999999999999997 8999999999999999999999999988664443 347899999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 329 ~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++|+ .|.++++.+.+++ .|++.++|+|++.+| +|| ++|+|||+||++|++|++++++ ++|+++|+++|++
T Consensus 232 t~~~-~a~~~~~i~~ail--~~~~~v~~~sv~~~g-~yg-~~~v~~S~Pv~ig~~Gv~~i~~-l~L~~~E~~~L~~ 301 (315)
T PRK00066 232 TYYG-IAMALARITKAIL--NNENAVLPVSAYLEG-QYG-EEDVYIGVPAVVNRNGIREIVE-LPLNDDEKQKFAH 301 (315)
T ss_pred ehHH-HHHHHHHHHHHHH--cCCCeEEEEEEEecc-ccC-CCCEEEEeEEEEeCCcEEEEcC-CCCCHHHHHHHHH
Confidence 9885 6667777777777 589999999999999 899 5899999999999999999985 9999999999985
No 16
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.2e-63 Score=495.21 Aligned_cols=308 Identities=50% Similarity=0.780 Sum_probs=274.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+|.||+||||+|+||+++++.|+.+++++.++...|+|+|++.+.++++++++|+.|+.+++..++++..+.+++++|||
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aD 80 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVD 80 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCC
Confidence 47899999988999999999999999886323345566666555567899999999988666566766666689999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecchhhHHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENR 254 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs~R 254 (405)
+||+++|.+++++++|.+++..|++|++++++.|+++++|++++|++|||+|+||+++++.++++|+++||+||.||++|
T Consensus 81 iVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~~ig~gt~LDs~R 160 (325)
T cd01336 81 VAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNR 160 (325)
T ss_pred EEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHHHEEeeehHHHHH
Confidence 99999999999999999999999999999999999997679999999999999999999998889987799999999999
Q ss_pred HHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEc----CcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCch
Q 015501 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN----GLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSS 330 (405)
Q Consensus 255 ~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~----G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~ 330 (405)
++++||+++++++++|++++||||||++|||+||+++|+ |+|+.+++.+++|..+++.+++++++++|++.++++.
T Consensus 161 ~r~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~~~g~t 240 (325)
T cd01336 161 AKSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKARKLSS 240 (325)
T ss_pred HHHHHHHHhCcChhhceEeEEEEcCCCCeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHHccccch
Confidence 999999999999999987779999999999999999999 9999999876667788999999999999999644334
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 331 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 331 ~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+.++|.++++++++|+.+.+++.++|+|++++| +||+|+|++||+||++|++||++++ +++|+++|+++|++
T Consensus 241 ~~~~a~~~~~i~~ail~~~~~~~v~~vs~~~~g-~yg~~~~v~~s~P~~ig~~Gv~~i~-~~~L~~~E~~~l~~ 312 (325)
T cd01336 241 AMSAAKAICDHVHDWWFGTPEGEFVSMGVYSDG-SYGVPEGLIFSFPVTCKNGKWKIVQ-GLSIDDFSREKIDA 312 (325)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCeEEEEEEecCC-CcCCCCceEEEEEEEEeCCEEEEec-CCCCCHHHHHHHHH
Confidence 445889999999999954346999999999999 8999899999999999999999998 59999999999975
No 17
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=1.2e-63 Score=491.67 Aligned_cols=289 Identities=35% Similarity=0.579 Sum_probs=258.0
Q ss_pred HHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEEEeCCcCCCCCCchhh
Q 015501 113 LFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192 (405)
Q Consensus 113 a~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ 192 (405)
.+.|+++++|| |+++.|+|+|++.++++++|++|||.|+.++......++++.+++++|||+||+++|.||+|||+|.+
T Consensus 2 ~~~~~~g~~~g-~~~~~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~d 80 (313)
T TIGR01756 2 SHWIANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRAD 80 (313)
T ss_pred cceeccCcccC-CCeEEEEEecCCCccchhHhHHHHHHHhccccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHH
Confidence 45678899999 89999999988877899999999999998444333344444447999999999999999999999999
Q ss_pred hHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHH-HHCCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCce
Q 015501 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL-KNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271 (405)
Q Consensus 193 ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~-k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~ 271 (405)
++..|++|++++++.|++++.+++++|++|||+|+||++++ +.+ ++|+++||+||.||++||+++||+++++++++|+
T Consensus 81 ll~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~~~~s-g~p~~vig~gt~LDsaR~r~~la~~l~v~~~~V~ 159 (313)
T TIGR01756 81 LLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLHAP-KLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIY 159 (313)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHHHHHHHHHcC-CCCHHHEEecccHHHHHHHHHHHHHhCcChhhee
Confidence 99999999999999999998456899999999999999995 655 7888899999999999999999999999999998
Q ss_pred eEEEEeecCCCcccccccceE--cCcchHhh--hhhccccHHHHHHHHHhhhHHHHHhcCCchHHHHHHHHHHHHHHhhc
Q 015501 272 NMTIWGNHSTTQVPDFLNARI--NGLPVKEI--IKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVT 347 (405)
Q Consensus 272 ~~~V~G~HG~~~vp~~S~a~I--~G~p~~~~--~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s~A~~i~~ai~~~~~ 347 (405)
+++||||||++|||+||+++| +|+|+..+ +. ++|..+++.+++++++++|++.||.++|+..|.++++++++|+.
T Consensus 160 ~~~V~GeHG~s~vp~~S~~~V~~~G~~~~~~~~~~-~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~ail~ 238 (313)
T TIGR01756 160 HVVVWGNHAESMVADLTHAEFTKNGKHQKVFDELC-RDYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLF 238 (313)
T ss_pred eeEEEECCCCceeecccccEEecCCeehhHhhhcC-cHhHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHHHhc
Confidence 777999999999999999999 99996544 32 24667899999999999999999999998777899999999997
Q ss_pred CCCCCcEEEEeeeeCC-cccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 348 PTPEGDWFSSGVYTNG-NPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 348 ~~~~~~i~~~sv~~~G-~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++|++.++|+|++++| .+||+|+|++||+||++|++|+++++++++|+++|+++|++
T Consensus 239 ~~~~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l~L~~~E~~~l~~ 296 (313)
T TIGR01756 239 GTRPGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQ 296 (313)
T ss_pred CCCCCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCCCCCHHHHHHHHH
Confidence 6688999999999852 27999889999999999999999999779999999999975
No 18
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=3.2e-63 Score=487.59 Aligned_cols=286 Identities=41% Similarity=0.661 Sum_probs=258.7
Q ss_pred HHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHH
Q 015501 116 LAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLD 195 (405)
Q Consensus 116 L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~ 195 (405)
|+++++||.++++.|+|+|++.++++++|++|||.|+++++...+++++++|++++|||+||+++|.|++||++|.+++.
T Consensus 2 ~~~g~~~g~~~~~~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~ 81 (309)
T PLN00135 2 IARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMS 81 (309)
T ss_pred cccccccCCCCeEEEEEecCcccccchhhHHHHHHhhhHHhcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHH
Confidence 56788999889999999877776699999999999998555555665566699999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEE
Q 015501 196 INGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275 (405)
Q Consensus 196 ~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V 275 (405)
.|++|++++++.|+++++|++++|++|||+|+||+++++.++..++|+||+||.||++||+++||+++|+++++|++++|
T Consensus 82 ~N~~I~~~i~~~i~~~~~p~aivivvsNPvDv~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V 161 (309)
T PLN00135 82 KNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVII 161 (309)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCcHHHHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEE
Confidence 99999999999999964599999999999999999999999766669999999999999999999999999999965699
Q ss_pred EeecCCCcccccccceE----cCcchHhhhhhccccHHHHHHHHHhhhHHHHHh-cCCchHHHHHHHHHHHHHHhhcCCC
Q 015501 276 WGNHSTTQVPDFLNARI----NGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK-WGRSSAASTAVSIVDAMKSLVTPTP 350 (405)
Q Consensus 276 ~G~HG~~~vp~~S~a~I----~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~-~G~~~~~s~A~~i~~ai~~~~~~~~ 350 (405)
|||||++|||+||+++| +|+|+.+++.+++|+.+++.+++++++++|++. +|++.| ++|.++++++++|+.+.|
T Consensus 162 lGeHG~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~kg~t~~-~ia~a~~~iv~ai~~~~~ 240 (309)
T PLN00135 162 WGNHSSTQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSAL-SAASSACDHIRDWVLGTP 240 (309)
T ss_pred EEcCCCceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHccCccHHH-HHHHHHHHHHHHHHhCCc
Confidence 99999999999999999 999999987665577889999999999999997 555555 588999999999885447
Q ss_pred CCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 351 EGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 351 ~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++.++|+|++++| +||+|+|++||+||++|++|++.++ +++|+++|+++|++
T Consensus 241 ~~~v~~vsv~~~g-~YGi~~~v~~s~P~vlg~~gve~v~-~l~L~~~E~~~l~~ 292 (309)
T PLN00135 241 EGTWVSMGVYSDG-SYGVPPGLIYSFPVTCEKGEWSIVQ-GLSIDEFSRKKMDA 292 (309)
T ss_pred CCeEEEEEEEecC-ccCCcCCeEEEEEEEEECCEEEEec-CCCCCHHHHHHHHH
Confidence 8999999999999 8999889999999999999998887 59999999999985
No 19
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=7e-62 Score=479.51 Aligned_cols=291 Identities=23% Similarity=0.361 Sum_probs=262.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
+||+|||+ |.||+++++.|+..++.. +|.| +|++.++++++++||.|+.......+.+..++++++++||+|
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~---ei~l----~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIV 72 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIAD---ELVL----IDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIV 72 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCC---EEEE----EeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEE
Confidence 48999995 999999999999988754 3655 577778899999999998744434456667889999999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHHHH
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~R~ 255 (405)
|+++|.|++|||+|.+++.+|++|++++++.|+++| |++++|++|||+|++|+++++.+ ++|+ |+||+||.||++|+
T Consensus 73 Iitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP~d~~~~~~~~~~-g~p~~~v~g~gt~LDs~R~ 150 (306)
T cd05291 73 VITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNPVDVITYVVQKLS-GLPKNRVIGTGTSLDTARL 150 (306)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHh-CcCHHHEeeccchHHHHHH
Confidence 999999999999999999999999999999999997 99999999999999999999986 6776 88999999999999
Q ss_pred HHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcccc---HHHHHHHHHhhhHHHHHhcCCchHH
Q 015501 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL---EEGFTETIQKRGGLLIKKWGRSSAA 332 (405)
Q Consensus 256 ~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~---~~el~~~v~~~~~~ii~~~G~~~~~ 332 (405)
+++||+++|+++++|++ +||||||++++|+||+++|+|+|+.+++.+..|. .+++.++++++|++|++.||.++|+
T Consensus 151 ~~~la~~l~v~~~~v~~-~V~G~Hg~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~kg~t~~~ 229 (306)
T cd05291 151 RRALAEKLNVDPRSVHA-YVLGEHGDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGKGATYYG 229 (306)
T ss_pred HHHHHHHHCCCcccceE-EEEecCCCceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHccCccHHH
Confidence 99999999999999997 8999999999999999999999999988654554 5678999999999999999999875
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 333 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 333 s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+|.++++++++|+ .|++.++|+|++++| +||. +|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 230 -~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~l~~~E~~~l~~ 295 (306)
T cd05291 230 -IATALARIVKAIL--NDENAILPVSAYLDG-EYGE-KDVYIGVPAIIGRNGVEEVIE-LDLTEEEQEKFEK 295 (306)
T ss_pred -HHHHHHHHHHHHH--cCCCEEEEEEEEecc-ccCC-CCEEEEEEEEEeCCCEEEEEC-CCCCHHHHHHHHH
Confidence 5668888888888 689999999999999 7994 899999999999999999985 9999999999985
No 20
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=2.4e-61 Score=474.44 Aligned_cols=288 Identities=24% Similarity=0.347 Sum_probs=263.3
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCCcEEE
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEWAL 177 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dADiVI 177 (405)
|+|||| |.||+++++.|+..+++.+ +.| +|+++++++|+++||+|+...+ ...++. +++|++++|||+||
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~e---l~l----~D~~~~~~~g~~~DL~~~~~~~-~~~~i~~~~~~~~l~~aDiVI 71 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASE---LVL----VDVNEEKAKGDALDLSHASAFL-ATGTIVRGGDYADAADADIVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCE---EEE----EeCCccHHHHHHHhHHHhcccc-CCCeEEECCCHHHhCCCCEEE
Confidence 689995 9999999999999998764 555 5677789999999999998543 334443 46699999999999
Q ss_pred EeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHHHHH
Q 015501 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAK 256 (405)
Q Consensus 178 i~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~R~~ 256 (405)
+++|.|++|||+|.+++.+|+++++++++.|+++| |++|+|++|||+|++|++++++++ +|+ |+||+||.|||+|++
T Consensus 72 itag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d~~~~~~~~~sg-~~~~kviG~gt~lDs~r~~ 149 (300)
T cd00300 72 ITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVDILTYVAQKLSG-LPKNRVIGSGTLLDSARFR 149 (300)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHHHHHHHHHHHhC-cCHHHEEecCCcHHHHHHH
Confidence 99999999999999999999999999999999997 999999999999999999999985 664 999999999999999
Q ss_pred HHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchHHHHHH
Q 015501 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAV 336 (405)
Q Consensus 257 ~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s~A~ 336 (405)
+++|+++++++++|++ +||||||++|||+||+++|+|+|+.+++++.+|..+++.++++++++++++.||+++|+ +|.
T Consensus 150 ~~la~~l~v~~~~v~~-~viGeHg~s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~kg~t~~~-~a~ 227 (300)
T cd00300 150 SLLAEKLDVDPQSVHA-YVLGEHGDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKGATNYG-IAT 227 (300)
T ss_pred HHHHHHhCCCcccEEE-EEEeccCCceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHccCcchHH-HHH
Confidence 9999999999999997 89999999999999999999999999987766778999999999999999999998875 788
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 337 SIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 337 ~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++++++++|+ +|+++++|+|++++| +|| ++|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 228 a~~~~~~ai~--~~~~~v~~~s~~~~g-~yg-~~~~~~s~Pv~ig~~Gi~~i~~-l~L~~~E~~~l~~ 290 (300)
T cd00300 228 AIADIVKSIL--LDERRVLPVSAVQEG-QYG-IEDVALSVPAVVGREGVVRILE-IPLTEDEEAKLQK 290 (300)
T ss_pred HHHHHHHHHH--cCCCeEEEEEEEecC-ccC-CCCEEEEEEEEEeCCCeEEEec-CCCCHHHHHHHHH
Confidence 8999999888 579999999999999 899 4899999999999999999995 9999999999985
No 21
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=5.3e-61 Score=449.09 Aligned_cols=292 Identities=21% Similarity=0.295 Sum_probs=264.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dAD 174 (405)
..||.|+| +|+||.+.++.|+..++..+ ++| +|.++++++|++|||+|.+ ++...-.++ ..+|.+.+|++
T Consensus 20 ~~KItVVG-~G~VGmAca~siL~k~Lade---l~l----vDv~~dklkGE~MDLqH~s-~f~~~~~V~~~~Dy~~sa~S~ 90 (332)
T KOG1495|consen 20 HNKITVVG-VGQVGMACAISILLKGLADE---LVL----VDVNEDKLKGEMMDLQHGS-AFLSTPNVVASKDYSVSANSK 90 (332)
T ss_pred CceEEEEc-cchHHHHHHHHHHHhhhhhc---eEE----EecCcchhhhhhhhhcccc-ccccCCceEecCcccccCCCc
Confidence 68999999 59999999999999999865 666 6777889999999999998 666544444 34899999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~ 253 (405)
+||+|+|...++|++|++++++|..||+.+.+.+.+| +|++++|+++||+|+|||+.||.+ ++|+ |+||.||.|||.
T Consensus 91 lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPVDilTYv~wKLS-gfP~nRViGsGcnLDsa 168 (332)
T KOG1495|consen 91 LVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPVDILTYVTWKLS-GFPKNRVIGSGCNLDSA 168 (332)
T ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCchHHHHHHHHHHc-CCcccceeccCcCccHH
Confidence 9999999988999999999999999999999999999 599999999999999999999998 5786 999999999999
Q ss_pred HHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcc-----ccHHHHHHHHHhhhHHHHHhcCC
Q 015501 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-----WLEEGFTETIQKRGGLLIKKWGR 328 (405)
Q Consensus 254 R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~-----~~~~el~~~v~~~~~~ii~~~G~ 328 (405)
|||+.++++||++|+++++ +|+|||||+.||.||.+.|.|.++.++..+.. ..-+++.++|...+|++++.||+
T Consensus 169 RFryLi~~~Lg~~pss~hg-wIiGEHGdSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklKGy 247 (332)
T KOG1495|consen 169 RFRYLIGNRLGVHPSSCHG-WIIGEHGDSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLKGY 247 (332)
T ss_pred HHHHHHHHHhCCCcccceE-EEeeccCCccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999997 89999999999999999999999998765421 11247888999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 329 ~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++|+ .+.++++.+.+++ .|.+.++|+|+..+| .|||.+|+|||+||++|++|+..+++ .+|+++|.++|++
T Consensus 248 Tswa-Iglsva~l~~ail--~n~~~i~~Vst~~kg-~~gI~~dVflSlPc~l~~~Gi~~vv~-~~Lt~~E~akL~k 318 (332)
T KOG1495|consen 248 TSWA-IGLSVADLAQAIL--RNLRRIHPVSTMVKG-LYGIDDDVFLSLPCLLGANGITHVVK-QKLTDEEVAKLKK 318 (332)
T ss_pred hHHH-HHHHHHHHHHHHH--hCcCceeeeeecccc-ccCCCCceEEecceeecCCchhhhhc-ccCCHHHHHHHHH
Confidence 9996 7788888888777 789999999999999 89998899999999999999999995 9999999999975
No 22
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=8.7e-59 Score=457.82 Aligned_cols=290 Identities=23% Similarity=0.353 Sum_probs=261.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+|||+ |.||+++++.|+..++..+ +.| +|++++++++.++|+.|+. ++.....+.+++++++++||+|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~e---v~l----~D~~~~~~~g~a~dl~~~~-~~~~~~~i~~~d~~~l~~aDiV 71 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASE---IVL----VDINKAKAEGEAMDLAHGT-PFVKPVRIYAGDYADCKGADVV 71 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCE---EEE----EECCchhhhhHHHHHHccc-cccCCeEEeeCCHHHhCCCCEE
Confidence 59999995 9999999999999887543 655 5777788999999999986 4444456667889999999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHHHH
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~R~ 255 (405)
|++++.|++++++|.+++.+|+++++++++.|++++ |++++++++||+|++|+++++++ ++|+ |+||+||.||++|+
T Consensus 72 iita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~-~~giiiv~tNP~d~~~~~~~~~s-g~p~~~viG~gt~LDs~R~ 149 (308)
T cd05292 72 VITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYA-PDAILLVVTNPVDVLTYVAYKLS-GLPPNRVIGSGTVLDTARF 149 (308)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHH-CcCHHHeecccchhhHHHH
Confidence 999999999999999999999999999999999997 99999999999999999999998 5776 88999999999999
Q ss_pred HHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhc--c---ccHHHHHHHHHhhhHHHHHhcCCch
Q 015501 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--K---WLEEGFTETIQKRGGLLIKKWGRSS 330 (405)
Q Consensus 256 ~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~--~---~~~~el~~~v~~~~~~ii~~~G~~~ 330 (405)
+++||+++++++++|++ +||||||++|||+||+++|+|+|+.+++.+. . +..+++.+++++++++|++.||.++
T Consensus 150 ~~~la~~~~v~~~~v~~-~viGeHg~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~kg~t~ 228 (308)
T cd05292 150 RYLLGEHLGVDPRSVHA-YIIGEHGDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKGATY 228 (308)
T ss_pred HHHHHHHhCCCccceec-eeeccCCCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcCCccH
Confidence 99999999999999996 8999999999999999999999999886542 1 2356799999999999999999988
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 331 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 331 ~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|+ +|.++++++++|+ .|++.++|+|++++| +||+ +|++||+||+||++|++++++ ++|+++|+++|++
T Consensus 229 ~~-~a~a~~~i~~ail--~~~~~v~~~s~~~~g-~yg~-~~~~~s~P~~ig~~Gv~~i~~-~~L~~~E~~~l~~ 296 (308)
T cd05292 229 YA-IGLALARIVEAIL--RDENSVLTVSSLLDG-QYGI-KDVALSLPCIVGRSGVERVLP-PPLSEEEEEALRA 296 (308)
T ss_pred HH-HHHHHHHHHHHHH--cCCCcEEEEEEEEcc-cCCC-CCEEEEEEEEEeCCceEEecC-CCCCHHHHHHHHH
Confidence 75 5667888888887 689999999999999 7998 799999999999999999995 9999999999985
No 23
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=2e-58 Score=457.11 Aligned_cols=292 Identities=24% Similarity=0.355 Sum_probs=257.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dA 173 (405)
+.+||+|||| |+||+++++.++..++ . ++.| +|+++++++|.++|+.|+.........+. +++|++++||
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~---~l~L----~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~A 74 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL-G---DVVL----YDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDS 74 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC-C---eEEE----EECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCC
Confidence 4579999996 9999999999998886 2 2554 45666778899999999863222234443 4688999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCC-CCceeecchhhH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP-AKNFHALTRLDE 252 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~-~k~ig~gt~LDs 252 (405)
|+||+++|.++++|++|.|++..|.++++++++.|+++| |++|+|++|||+|++++++++.+ ++| .|+||+||.||+
T Consensus 75 DiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~di~t~~~~~~s-~~p~~rviG~gt~lds 152 (319)
T PTZ00117 75 DVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPLDCMVKVFQEKS-GIPSNKICGMAGVLDS 152 (319)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHHHHHHHHHHhh-CCCcccEEEecchHHH
Confidence 999999999999999999999999999999999999997 99999999999999999999987 677 599999999999
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcccc---HHHHHHHHHhhhHHHHHh--cC
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL---EEGFTETIQKRGGLLIKK--WG 327 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~---~~el~~~v~~~~~~ii~~--~G 327 (405)
+|++++||+++|+++++|++ +|+||||++|||+||+++|+|+|+.+++++..|. .+++.++++++++++++. +|
T Consensus 153 ~R~~~~la~~l~v~~~~v~~-~viGeHg~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~~kg 231 (319)
T PTZ00117 153 SRFRCNLAEKLGVSPGDVSA-VVIGGHGDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLLKKG 231 (319)
T ss_pred HHHHHHHHHHhCCCcccceE-EEeecCCCcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999996 8899999999999999999999999987654454 457888999999999986 66
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 328 RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 328 ~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.+.| ++|.++++++.+|+ .|+++++|+|++++| +||++ |++||+||++|++|++++++ ++|+++||++|++
T Consensus 232 ~t~~-~~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~~-~~~~s~P~~ig~~Gv~~i~~-l~l~~~E~~~l~~ 302 (319)
T PTZ00117 232 SAFF-APAAAIVAMIEAYL--KDEKRVLVCSVYLNG-QYNCK-NLFVGVPVVIGGKGIEKVIE-LELNAEEKELFDK 302 (319)
T ss_pred ChHH-HHHHHHHHHHHHHh--cCCCeEEEEEEEecc-ccCCC-CeEEEEEEEEeCCeEEEEeC-CCCCHHHHHHHHH
Confidence 5554 58888999999888 578999999999999 79995 99999999999999999995 9999999999975
No 24
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=2.8e-58 Score=454.29 Aligned_cols=294 Identities=25% Similarity=0.388 Sum_probs=258.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dADi 175 (405)
|||+|+||+|++|+++++.|+..++.++ |. ++|.+...+++++.++|+.|+.........++ +++++++++||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~---v~--lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDi 75 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKE---IN--LISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDI 75 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCE---EE--EEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCE
Confidence 6999999889999999999999988653 44 44443345889999999998753222223332 345899999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~R 254 (405)
||+++|.|+++|++|.+++..|+++++++++.|++++ |+++||+++||+|++|+++++.++ +|+ |+||+||.||++|
T Consensus 76 Viitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~~t~~~~~~~g-~~~~~viG~gt~LDs~R 153 (309)
T cd05294 76 VIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDVMTYKALKESG-FDKNRVFGLGTHLDSLR 153 (309)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHhcC-CCHHHEeeccchHHHHH
Confidence 9999999999999999999999999999999999997 999999999999999999999996 665 8899999999999
Q ss_pred HHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchHHHH
Q 015501 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAST 334 (405)
Q Consensus 255 ~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s~ 334 (405)
++++||+++++++++|++ +|+||||++|||+||+++|+|+|+.+++...++..+++.++++++|++|++.||+++| ++
T Consensus 154 ~~~~la~~l~v~~~~v~~-~viGeHg~s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~kg~t~~-~~ 231 (309)
T cd05294 154 FKVAIAKHFNVHISEVHT-RIIGEHGDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLKGGSEY-GP 231 (309)
T ss_pred HHHHHHHHHCcChHHeEE-EEEecCCCceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhcCCchh-hH
Confidence 999999999999999996 8999999999999999999999999986533455678999999999999999999877 46
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeeeeCCccc-CCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 335 A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~y-gi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|.++++++++|+ +|++.++|++|+++| +| |++ |+++|+||++|++|++++++ ++|+++|+++|++
T Consensus 232 a~~~~~ii~ail--~~~~~v~~vsv~~~g-~~~~~~-~~~~svP~~ig~~Gv~~i~~-l~l~~~E~~~l~~ 297 (309)
T cd05294 232 ASAISNLVRTIA--NDERRILTVSTYLEG-EIDGIR-DVCIGVPVKLGKNGIEEIVP-IEMDDDEREAFRK 297 (309)
T ss_pred HHHHHHHHHHHH--CCCCeEEEEEEEECC-ccCCCC-CeEEEeEEEEcCCccEEEeC-CCCCHHHHHHHHH
Confidence 677777777777 689999999999999 56 996 99999999999999999996 9999999999985
No 25
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-57 Score=450.92 Aligned_cols=294 Identities=20% Similarity=0.302 Sum_probs=256.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccC
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFE 171 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~ 171 (405)
|.+++||+|||| |+||+++++.++..++. ++.| +|++++++++.++|+.|.........++. +++|++++
T Consensus 3 ~~~~~KI~IIGa-G~vG~~ia~~la~~gl~----~i~L----vDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 3 MIKRRKISLIGS-GNIGGVMAYLIVLKNLG----DVVL----FDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCC----eEEE----EeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhC
Confidence 445689999995 99999999999988872 2554 56666778899999999862222233444 46789999
Q ss_pred CCcEEEEeCCcCCCCCC-----chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCC-CCcee
Q 015501 172 DAEWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP-AKNFH 245 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~-----~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~-~k~ig 245 (405)
|||+||++++.|++||+ +|.+++..|.++++++++.|+++| |++|+|++|||+|++++++++.+ ++| .|+||
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~di~t~~~~~~s-g~p~~rviG 151 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPLDVMVKLLQEHS-GLPKNKVCG 151 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHhc-CCChhhEEE
Confidence 99999999999999999 999999999999999999999997 99999999999999999999987 576 59999
Q ss_pred ecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccc---cHHHHHHHHHhhhHHH
Q 015501 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW---LEEGFTETIQKRGGLL 322 (405)
Q Consensus 246 ~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~---~~~el~~~v~~~~~~i 322 (405)
+||.||++|++++||+++|+++++|++ +|+||||++|||+||+++|+|+|+.+++....+ ..+++.++++++|++|
T Consensus 152 lgt~lds~R~~~~la~~l~v~~~~v~~-~viGeHg~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i 230 (321)
T PTZ00082 152 MAGVLDSSRLRTYIAEKLGVNPRDVHA-SVIGAHGDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEI 230 (321)
T ss_pred ecCcccHHHHHHHHHHHhCCCccccee-eEEecCCCceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 899999999999999999999999988643211 2467899999999999
Q ss_pred HHh--cCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHH
Q 015501 323 IKK--WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRK 400 (405)
Q Consensus 323 i~~--~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~ 400 (405)
++. +|.+.| ++|.++++++++|+ .|++.++|+|++++| +||+ +|++||+||+||++|++++++ ++|+++|++
T Consensus 231 ~~~~gkg~t~~-~ia~a~~~i~~ail--~d~~~v~~vs~~~~g-~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~l~~~E~~ 304 (321)
T PTZ00082 231 VDLLGTGSAYF-APAAAAIEMAEAYL--KDKKRVLPCSAYLEG-QYGH-KDIYMGTPAVIGANGVEKIIE-LDLTPEEQK 304 (321)
T ss_pred HhhcCCCccHH-HHHHHHHHHHHHHH--cCCCcEEEEEEEecc-cCCC-CCeEEEEEEEEeCCeEEEEeC-CCCCHHHHH
Confidence 995 566665 47778888888887 689999999999999 7999 799999999999999999996 999999999
Q ss_pred HHhh
Q 015501 401 RIAK 404 (405)
Q Consensus 401 ~l~~ 404 (405)
+|++
T Consensus 305 ~l~~ 308 (321)
T PTZ00082 305 KFDE 308 (321)
T ss_pred HHHH
Confidence 9985
No 26
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=1.5e-57 Score=448.12 Aligned_cols=287 Identities=23% Similarity=0.371 Sum_probs=251.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc--ceEEEecCcccccCCCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINPYELFEDAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~--~~v~i~~~~~eal~dAD 174 (405)
+||+|||+ |.||+.+|+.++..++. + +.| +|++++...|.++|+.|...... .+++. +++|+++++||
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~---Vvl----vDi~~~l~~g~a~d~~~~~~~~~~~~~i~~-t~d~~~~~~aD 71 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA-D---LVL----LDVVEGIPQGKALDMYEASPVGGFDTKVTG-TNNYADTANSD 71 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC-e---EEE----EeCCCChhHHHHHhhhhhhhccCCCcEEEe-cCCHHHhCCCC
Confidence 69999995 99999999999998763 2 555 45566777889999887652211 23443 46788899999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~ 253 (405)
+||+++|.|+++|++|.+++..|.++++++++.|.+++ |++++|++|||+|++|+++++.+ ++|+ |+||+||.|||+
T Consensus 72 iVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di~t~~~~~~s-g~~~~rviG~g~~lds~ 149 (305)
T TIGR01763 72 IVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDAMTYVAWQKS-GFPKERVIGQAGVLDSA 149 (305)
T ss_pred EEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHH-CcCHHHEEEeccchHHH
Confidence 99999999999999999999999999999999999996 99999999999999999999998 4665 999999999999
Q ss_pred HHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHh--cCCchH
Q 015501 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK--WGRSSA 331 (405)
Q Consensus 254 R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~--~G~~~~ 331 (405)
|++++||+++++++++|++ +||||||++|||+||+++|+|+|+.+++.++. .+++.++++++|++|++. +|.+.|
T Consensus 150 R~~~~la~~l~v~~~~v~~-~v~GeHg~s~~~~wS~~~i~g~~~~~~~~~~~--~~~l~~~v~~~g~~ii~~~~kg~t~~ 226 (305)
T TIGR01763 150 RFRTFIAMELGVSVQDVTA-CVLGGHGDAMVPLVRYSTVAGIPVADLISAER--IAEIVERTRKGGGEIVNLLKQGSAYY 226 (305)
T ss_pred HHHHHHHHHhCcCHHHeee-eEEecCCCcEEeeeeeeEECCEEHHHhcCHHH--HHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 9999999999999999996 89999999999999999999999999875432 478999999999999996 556766
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 332 ~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+ +|.++++++.+++ .|++.++|+|++++| +||+ +|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 227 ~-~a~~~~~i~~ai~--~~~~~v~~~s~~~~~-~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~l~~~E~~~l~~ 293 (305)
T TIGR01763 227 A-PAASVVEMVEAIL--KDRKRVLPCAAYLDG-QYGI-DGIYVGVPVILGKNGVEHIYE-LKLDQSELALLNK 293 (305)
T ss_pred H-HHHHHHHHHHHHh--CCCCeEEEEEEEecc-cCCC-CceEEEEEEEEeCCeEEEEeC-CCCCHHHHHHHHH
Confidence 4 6666777777666 689999999999999 7999 799999999999999999996 9999999999985
No 27
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.2e-57 Score=446.45 Aligned_cols=280 Identities=25% Similarity=0.315 Sum_probs=237.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCc---ccccCCC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP---YELFEDA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~---~eal~dA 173 (405)
|||+||||+|+||+++|+.|+.+++..+ +.| +|++ +++|++|||+|+... .++....++ |++++||
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~e---lvL----iDi~--~a~g~alDL~~~~~~--~~i~~~~~~~~~y~~~~da 69 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSE---LAL----YDIV--NTPGVAADLSHINTP--AKVTGYLGPEELKKALKGA 69 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcE---EEE----EecC--ccceeehHhHhCCCc--ceEEEecCCCchHHhcCCC
Confidence 6999999779999999999999998653 554 4554 789999999998721 234422132 8999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH----HHHHHHHCCCCCC-Cceeecc
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN----ALICLKNAPSIPA-KNFHALT 248 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~----t~~~~k~s~~~~~-k~ig~gt 248 (405)
|+||+++|.||+|||+|+|++..|++|++++++.|++++ |++|+|++|||+|+| ++++++.+ ++|+ |+||+|+
T Consensus 70 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvDv~~~i~t~~~~~~s-~~p~~rviG~~~ 147 (310)
T cd01337 70 DVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNPVNSTVPIAAEVLKKAG-VYDPKRLFGVTT 147 (310)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCchhhHHHHHHHHHHHhc-CCCHHHEEeeec
Confidence 999999999999999999999999999999999999996 999999999999998 77888887 4665 8999976
Q ss_pred hhhHHHHHHHHHHHhCCCCCCceeEEEEeec-CCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhc-
Q 015501 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW- 326 (405)
Q Consensus 249 ~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~H-G~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~- 326 (405)
|||+|+++++|+++|+++++|+. +||||| |++|||+||++++. .++ .+ + ..+++.++++++|++|++.|
T Consensus 148 -LDs~R~~~~la~~l~v~~~~V~~-~v~GeHsGds~vp~~S~~~~~----~~~-~~-~-~~~~i~~~v~~~g~~Ii~~k~ 218 (310)
T cd01337 148 -LDVVRANTFVAELLGLDPAKVNV-PVIGGHSGVTILPLLSQCQPP----FTF-DQ-E-EIEALTHRIQFGGDEVVKAKA 218 (310)
T ss_pred -hHHHHHHHHHHHHhCcCHHHEEE-EEEecCCCCceeccccccccc----ccC-CH-H-HHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999994 999999 89999999999753 332 11 1 25789999999999999974
Q ss_pred --CCchHHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCC-CCCHHHHHHH
Q 015501 327 --GRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLRKRI 402 (405)
Q Consensus 327 --G~~~~~s~A~~i~~ai~~~~~~-~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~-~L~~~E~~~l 402 (405)
|.++| ++|.++++++++|+.. .+++.+++++ +.+| + |. +|+|||+||++|++|++++++ + +|+++|+++|
T Consensus 219 gkg~t~~-~~a~a~~~iv~aIl~~~~~~~~~~~~s-~~~~-~-g~-~~v~~s~P~~ig~~Gv~~i~~-l~~L~~~E~~~l 292 (310)
T cd01337 219 GAGSATL-SMAYAGARFANSLLRGLKGEKGVIECA-YVES-D-VT-EAPFFATPVELGKNGVEKNLG-LGKLNDYEKKLL 292 (310)
T ss_pred CCCCcch-hHHHHHHHHHHHHHHhcCCCcceEEEE-EEec-c-CC-CceEEEEEEEEeCCeEEEEeC-CCCCCHHHHHHH
Confidence 66655 4888899999988843 3466788887 7777 4 65 799999999999999999985 8 6999999999
Q ss_pred hh
Q 015501 403 AK 404 (405)
Q Consensus 403 ~~ 404 (405)
++
T Consensus 293 ~~ 294 (310)
T cd01337 293 EA 294 (310)
T ss_pred HH
Confidence 75
No 28
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=4.7e-57 Score=444.70 Aligned_cols=280 Identities=24% Similarity=0.249 Sum_probs=232.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-Cc--ccccCCCc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP--YELFEDAE 174 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~--~eal~dAD 174 (405)
||+||||+|+||+++++.|+.+++..+ +.| +|+++ ++|++|||+|.. . ..++..++ ++ |++++|||
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~e---lvL----~Di~~--a~g~a~DL~~~~-~-~~~i~~~~~~~~~~~~~~daD 69 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSE---LSL----YDIAG--AAGVAADLSHIP-T-AASVKGFSGEEGLENALKGAD 69 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcE---EEE----ecCCC--CcEEEchhhcCC-c-CceEEEecCCCchHHHcCCCC
Confidence 799999779999999999999887643 544 44443 679999999976 2 22344322 33 99999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH----HHHHHHHHCCCCCC-Cceeecch
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT----NALICLKNAPSIPA-KNFHALTR 249 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~----~t~~~~k~s~~~~~-k~ig~gt~ 249 (405)
+||+++|.||+||++|.+++..|++|++++++.|++++ |++++|++|||+|+ +|+++++.+ ++|+ |+||+|+
T Consensus 70 ivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPvDv~~~i~t~~~~~~s-g~p~~rViG~g~- 146 (312)
T TIGR01772 70 VVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPVNSTVPIAAEVLKKKG-VYDPNKLFGVTT- 146 (312)
T ss_pred EEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCchhhHHHHHHHHHHHhc-CCChHHEEeeec-
Confidence 99999999999999999999999999999999999996 99999999999998 888888887 5665 8999986
Q ss_pred hhHHHHHHHHHHHhCCCCCCceeEEEEeecCC-CcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHh---
Q 015501 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK--- 325 (405)
Q Consensus 250 LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~-~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~--- 325 (405)
||++||+++||+++|+++++|+. +||||||+ +|||+||++++ .+. +.++ ..+++.++++++|++|++.
T Consensus 147 LDsaR~r~~la~~l~v~~~~v~~-~ViGeHg~~s~vp~~S~~~~--~~~---~~~~--~~~~i~~~v~~~g~~Ii~~k~g 218 (312)
T TIGR01772 147 LDIVRANTFVAELKGKDPMEVNV-PVIGGHSGETIIPLISQCPG--KVL---FTED--QLEALIHRIQNAGTEVVKAKAG 218 (312)
T ss_pred chHHHHHHHHHHHhCCCHHHeEE-EEEEecCCCccccccccccc--cCC---CCHH--HHHHHHHHHHHHHHHHHhCccC
Confidence 99999999999999999999985 99999987 99999999984 232 2222 2578999999999999996
Q ss_pred cCCchHHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCC-CCCHHHHHHHh
Q 015501 326 WGRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLRKRIA 403 (405)
Q Consensus 326 ~G~~~~~s~A~~i~~ai~~~~~~-~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~-~L~~~E~~~l~ 403 (405)
+|.+.| ++|.++++++.+++.. .|++.++|++ +++| +||. +|+|||+||++|++|++++++ + +|+++|+++|+
T Consensus 219 kg~t~~-~ia~a~~~iv~ail~~~~d~~~v~~~s-~~~g-~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~~l~ 293 (312)
T TIGR01772 219 AGSATL-SMAFAGARFVLSLVRGLKGEEGVVECA-YVES-DGVT-EATFFATPLLLGKNGVEKRLG-IGKLSSFEEKMLN 293 (312)
T ss_pred CCChhH-HHHHHHHHHHHHHHHhhCCCccEEEEE-EEcc-CCCc-CceEEEEEEEEcCCeeEEEEc-cCCCCHHHHHHHH
Confidence 466655 3555555444444421 4678999965 8999 7997 799999999999999999995 8 89999999997
Q ss_pred h
Q 015501 404 K 404 (405)
Q Consensus 404 ~ 404 (405)
+
T Consensus 294 ~ 294 (312)
T TIGR01772 294 G 294 (312)
T ss_pred H
Confidence 5
No 29
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=8.3e-56 Score=436.07 Aligned_cols=289 Identities=23% Similarity=0.380 Sum_probs=254.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dAD 174 (405)
|+||+|||| |+||+++++.++..++. + +.| +|++++++++.++|+.|.........+++ ++++++++|||
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-e---v~L----~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aD 72 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-D---VVL----FDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSD 72 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-E---EEE----EECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCC
Confidence 689999996 99999999999987763 2 444 45677788999999998753333334444 46789999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~ 253 (405)
+||++++.|+++|++|.+++.+|+++++++++.|++++ |++++|++|||+|++|+++++++ ++|+ |+||+||.||++
T Consensus 73 iVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d~~~~~~~~~s-~~~~~~viG~gt~lds~ 150 (307)
T PRK06223 73 VVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVDAMTYVALKES-GFPKNRVIGMAGVLDSA 150 (307)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHh-CCCcccEEEeCCCcHHH
Confidence 99999999999999999999999999999999999997 99999999999999999999998 5664 899999999999
Q ss_pred HHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHh--cCCchH
Q 015501 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK--WGRSSA 331 (405)
Q Consensus 254 R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~--~G~~~~ 331 (405)
|++++||+++++++++|++ +|+||||++++|+||+++|+|.|+.+++.+ +| .+++.+.++++++++++. +|++.+
T Consensus 151 r~~~~la~~l~v~~~~v~~-~viGehg~s~~p~~S~~~v~g~~~~~~~~~-~~-~~~l~~~v~~~~~~ii~~~~kg~t~~ 227 (307)
T PRK06223 151 RFRTFIAEELNVSVKDVTA-FVLGGHGDSMVPLVRYSTVGGIPLEDLLSK-EK-LDEIVERTRKGGAEIVGLLKTGSAYY 227 (307)
T ss_pred HHHHHHHHHhCcChhhCcc-cEEcCCCCcceEchhhCEECCEEHHHhCCh-HH-HHHHHHHHHHHHHHHHhhcccCChhH
Confidence 9999999999999999996 889999999999999999999999988543 34 578999999999999985 676655
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 332 ~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
..|..+++++.+++ .|++.++|+|++++| +||+ +|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 228 -~~A~~~~~ii~ail--~~~~~~~~~~v~~~g-~yg~-~~~~~s~P~~i~~~Gv~~i~~-~~l~~~e~~~l~~ 294 (307)
T PRK06223 228 -APAASIAEMVEAIL--KDKKRVLPCSAYLEG-EYGV-KDVYVGVPVKLGKNGVEKIIE-LELDDEEKAAFDK 294 (307)
T ss_pred -HHHHHHHHHHHHHH--cCCCcEEEEEEEecC-cCCC-CCeEEEeEEEEeCCeEEEEeC-CCCCHHHHHHHHH
Confidence 46777788888888 578999999999999 6999 899999999999999999985 9999999999985
No 30
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=7.4e-55 Score=428.37 Aligned_cols=286 Identities=24% Similarity=0.381 Sum_probs=250.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCCcEEE
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEWAL 177 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dADiVI 177 (405)
|+|||| |.||+.+++.++..++. + +.| +|++++++++.++|+.+.........++. ++++++++|||+||
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-e---V~L----~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVI 71 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-D---VVL----LDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-E---EEE----EeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEE
Confidence 689996 99999999999987764 2 544 45556788899999998752222223443 35589999999999
Q ss_pred EeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCC-CCceeecchhhHHHHH
Q 015501 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP-AKNFHALTRLDENRAK 256 (405)
Q Consensus 178 i~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~-~k~ig~gt~LDs~R~~ 256 (405)
++++.|+++|++|.+++.+|.++++++++.|+++| |++++|++|||+|++|+++++++ ++| .|+||+||.||++|++
T Consensus 72 it~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~di~t~~~~~~s-~~~~~rviGlgt~lds~r~~ 149 (300)
T cd01339 72 ITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLDVMTYVAYKAS-GFPRNRVIGMAGVLDSARFR 149 (300)
T ss_pred EecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHh-CCCHHHEEEecchHHHHHHH
Confidence 99999999999999999999999999999999997 99999999999999999999998 565 4999999999999999
Q ss_pred HHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhc--CCchHHHH
Q 015501 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW--GRSSAAST 334 (405)
Q Consensus 257 ~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~--G~~~~~s~ 334 (405)
++||+++++++++|++ +|+|+||++++|+||+++|+|.|+.+++.+++ .+++.++++++++++++.+ |+++|+ .
T Consensus 150 ~~la~~l~v~~~~v~~-~v~G~hg~~~~~~~s~~~v~g~~~~~~~~~~~--~~~~~~~v~~~~~~ii~~k~~g~t~~~-~ 225 (300)
T cd01339 150 YFIAEELGVSVKDVQA-MVLGGHGDTMVPLPRYSTVGGIPLTELITKEE--IDEIVERTRNGGAEIVNLLKTGSAYYA-P 225 (300)
T ss_pred HHHHHHhCCCccceEE-EEEeCCCCcceecceecEECCEEHHHhcChHH--HHHHHHHHHHHHHHHHhhcCCCchhHH-H
Confidence 9999999999999996 88999999999999999999999998875543 5789999999999999966 777664 6
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 335 A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|.++++++.+++ .|++.++|+|++++| +||++ |++||+||++|++|++++++ +.|+++|+++|++
T Consensus 226 a~~~~~i~~ail--~~~~~i~~~s~~~~g-~yg~~-~~~~s~P~~ig~~G~~~~~~-l~l~~~E~~~l~~ 290 (300)
T cd01339 226 AAAIAEMVEAIL--KDKKRVLPCSAYLEG-EYGIK-DIFVGVPVVLGKNGVEKIIE-LDLTDEEKEAFDK 290 (300)
T ss_pred HHHHHHHHHHHH--cCCCcEEEEEEEecc-ccCCC-CeEEEEEEEEeCCeEEEEeC-CCCCHHHHHHHHH
Confidence 667777777666 689999999999999 89995 99999999999999999985 9999999999985
No 31
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-54 Score=425.96 Aligned_cols=285 Identities=25% Similarity=0.275 Sum_probs=243.6
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--Cc-cc
Q 015501 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NP-YE 168 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~-~e 168 (405)
+..+|.||+||||+|+||+++++.|+..++..+ +.| + |+ ++++++++||.|+.. ...+.-.+ ++ |+
T Consensus 4 ~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~e---lvL--~--Di--~~~~g~a~Dl~~~~~--~~~v~~~td~~~~~~ 72 (321)
T PTZ00325 4 SALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSE---LSL--Y--DI--VGAPGVAADLSHIDT--PAKVTGYADGELWEK 72 (321)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCE---EEE--E--ec--CCCcccccchhhcCc--CceEEEecCCCchHH
Confidence 445789999999779999999999998777643 444 4 44 467899999999773 22333222 33 89
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHH----HHCCCCCC-Cc
Q 015501 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL----KNAPSIPA-KN 243 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~----k~s~~~~~-k~ 243 (405)
+++|||+||+++|.|++|+++|.+++..|+++++++++.|++++ |+++|+++|||+|+++++++ +.+ ++|+ |+
T Consensus 73 ~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~-~~~iviv~SNPvdv~~~~~~~~~~~~s-g~p~~~v 150 (321)
T PTZ00325 73 ALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSA-PKAIVGIVSNPVNSTVPIAAETLKKAG-VYDPRKL 150 (321)
T ss_pred HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHhhhhhcc-CCChhhe
Confidence 99999999999999999999999999999999999999999995 99999999999999999995 766 5665 89
Q ss_pred eeecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCC-CcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHH
Q 015501 244 FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLL 322 (405)
Q Consensus 244 ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~-~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~i 322 (405)
||+++ |||+||+++||+++|+++++|++ +||||||+ +|||+||++ |.|+.+ + ..+++.++++++|++|
T Consensus 151 iG~g~-LDs~R~r~~la~~l~v~~~~V~~-~VlGeHGd~s~v~~~S~~---g~~l~~----~--~~~~i~~~v~~~g~~I 219 (321)
T PTZ00325 151 FGVTT-LDVVRARKFVAEALGMNPYDVNV-PVVGGHSGVTIVPLLSQT---GLSLPE----E--QVEQITHRVQVGGDEV 219 (321)
T ss_pred eechh-HHHHHHHHHHHHHhCcChhheEE-EEEeecCCcccccchhcc---CCCCCH----H--HHHHHHHHHHHHHHHH
Confidence 99985 99999999999999999999995 99999999 899999999 888642 1 2578999999999999
Q ss_pred HHhc---CCchHHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHH
Q 015501 323 IKKW---GRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYL 398 (405)
Q Consensus 323 i~~~---G~~~~~s~A~~i~~ai~~~~~~-~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E 398 (405)
++.| |++.| ++|.++++++++|+.. .|++.+++++ +.+| +||+ +|++||+||++|++|++++++.++|+++|
T Consensus 220 i~~k~~kg~t~~-g~a~a~~~i~~ail~~~~~~~~v~~~~-~~~g-~yg~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E 295 (321)
T PTZ00325 220 VKAKEGAGSATL-SMAYAAAEWSTSVLKALRGDKGIVECA-FVES-DMRP-ECPFFSSPVELGKEGVERVLPIGPLNAYE 295 (321)
T ss_pred HhcccCCCCchH-HHHHHHHHHHHHHHhhcCCCCCeEEEE-EEec-CCCC-CCeEEEEEEEEcCCeeEEEcCCCCCCHHH
Confidence 9976 55655 5888888888888854 4588899995 9999 7997 79999999999999999999438999999
Q ss_pred HHHHhh
Q 015501 399 RKRIAK 404 (405)
Q Consensus 399 ~~~l~~ 404 (405)
+++|++
T Consensus 296 ~~~l~~ 301 (321)
T PTZ00325 296 EELLEA 301 (321)
T ss_pred HHHHHH
Confidence 999985
No 32
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-52 Score=413.54 Aligned_cols=280 Identities=24% Similarity=0.298 Sum_probs=236.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHh-cccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE--ecCcccccCCC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI--GINPYELFEDA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~-~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i--~~~~~eal~dA 173 (405)
|||+||||+|.||+++++.|.. .+... ++.| +|+++ ..+++++|+.|.. ....+.. ..+.+++++|+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~---el~L----~d~~~-~~~g~alDl~~~~--~~~~i~~~~~~d~~~~l~~~ 70 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGS---ELSL----YDIAP-VTPGVAVDLSHIP--TAVKIKGFSGEDPTPALEGA 70 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCcc---EEEE----EecCC-CCcceehhhhcCC--CCceEEEeCCCCHHHHcCCC
Confidence 6999999889999999999865 34322 3444 34443 3678899998742 1122332 12338999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHH----HHCCCCCC-Cceeecc
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL----KNAPSIPA-KNFHALT 248 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~----k~s~~~~~-k~ig~gt 248 (405)
|+||+++|.+++++++|.+++.+|+++++++++.|++++ |+++|+++|||+|+||++++ |.+ ++|+ |+||+|+
T Consensus 71 DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivivvsNP~D~~t~~~~~~~~~~s-g~p~~rvig~~~ 148 (312)
T PRK05086 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGIITNPVNTTVAIAAEVLKKAG-VYDKNKLFGVTT 148 (312)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCchHHHHHHHHHHHHHhc-CCCHHHEEeeec
Confidence 999999999999999999999999999999999999996 99999999999999999987 776 5775 9999986
Q ss_pred hhhHHHHHHHHHHHhCCCCCCceeEEEEeecCC-CcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhc-
Q 015501 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW- 326 (405)
Q Consensus 249 ~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~-~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~- 326 (405)
||++|++++||+++|+++++|+. +||||||+ +|||+||++ +|.|+.+ + ..+++.++++++|++|++.|
T Consensus 149 -Lds~R~~~~ia~~l~~~~~~v~~-~v~GeHg~~s~~p~~S~~--~g~~l~~----~--~~~~i~~~v~~~g~~ii~~k~ 218 (312)
T PRK05086 149 -LDVIRSETFVAELKGKQPGEVEV-PVIGGHSGVTILPLLSQV--PGVSFTE----Q--EVADLTKRIQNAGTEVVEAKA 218 (312)
T ss_pred -HHHHHHHHHHHHHhCCChhheEE-EEEEecCCCceecccccc--CCccCCH----H--HHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999995 99999977 999999999 8988843 1 15789999999999999987
Q ss_pred --CCchHHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCC-CCCHHHHHHH
Q 015501 327 --GRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLRKRI 402 (405)
Q Consensus 327 --G~~~~~s~A~~i~~ai~~~~~~-~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~-~L~~~E~~~l 402 (405)
|.+.| ++|.++++++++|+.+ .|++.++|++ +.+| + |. +|+|||+||++|++|++++++ + +|+++|+++|
T Consensus 219 ~~g~t~~-~~a~a~~~~v~ai~~~~~~~~~v~~~~-~~~~-~-g~-~~v~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~~l 292 (312)
T PRK05086 219 GGGSATL-SMGQAAARFGLSLVRALQGEQGVVECA-YVEG-D-GK-YARFFAQPVLLGKNGVEERLP-IGTLSAFEQNAL 292 (312)
T ss_pred CCCCchh-hHHHHHHHHHHHHHhcCCCCCcEEEEE-EEec-c-CC-cceEEEEEEEEcCCeeEEEcC-CCCCCHHHHHHH
Confidence 55555 5889999999999866 5688899976 8888 4 75 789999999999999999996 7 9999999999
Q ss_pred hh
Q 015501 403 AK 404 (405)
Q Consensus 403 ~~ 404 (405)
++
T Consensus 293 ~~ 294 (312)
T PRK05086 293 EG 294 (312)
T ss_pred HH
Confidence 85
No 33
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=3e-52 Score=412.16 Aligned_cols=283 Identities=24% Similarity=0.289 Sum_probs=237.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCc---ccccC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP---YELFE 171 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~---~eal~ 171 (405)
.+.||+||||+|+||+++++.|+.++++++ +.| +|+++ ++|+++||.|+.... .+.-.+++ |++++
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~e---l~L----~Di~~--~~g~a~Dl~~~~~~~--~i~~~~~~~d~~~~l~ 85 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSE---LHL----YDIAN--TPGVAADVSHINTPA--QVRGFLGDDQLGDALK 85 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCE---EEE----EecCC--CCeeEchhhhCCcCc--eEEEEeCCCCHHHHcC
Confidence 467999999779999999999999988763 544 44444 789999999987422 33321233 89999
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh----HHHHHHHHHCCCCCCCceeec
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN----TNALICLKNAPSIPAKNFHAL 247 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d----~~t~~~~k~s~~~~~k~ig~g 247 (405)
|||+||+++|.|++||++|.+++..|.++++++++.+++++ |+++|+++|||+| ++++++++.++..|.|+||++
T Consensus 86 ~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~ 164 (323)
T PLN00106 86 GADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVT 164 (323)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEe
Confidence 99999999999999999999999999999999999999997 9999999999999 899999998853334899998
Q ss_pred chhhHHHHHHHHHHHhCCCCCCceeEEEEeecCC-CcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHh-
Q 015501 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK- 325 (405)
Q Consensus 248 t~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~-~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~- 325 (405)
+ ||++|+++++|+++|+++.+|++ +|+||||+ +|||+||++++. .+ +.++ ..+++.++++++|++|++.
T Consensus 165 ~-LDs~Rl~~~lA~~lgv~~~~V~~-~ViGeHg~~s~vp~~S~~~~~----~~-~~~~--~~~~i~~~v~~~g~~Ii~~k 235 (323)
T PLN00106 165 T-LDVVRANTFVAEKKGLDPADVDV-PVVGGHAGITILPLLSQATPK----VS-FTDE--EIEALTKRIQNGGTEVVEAK 235 (323)
T ss_pred c-chHHHHHHHHHHHhCCChhheEE-EEEEeCCCccEeeehhcceec----cc-CCHH--HHHHHHHHHHHHHHHHHhCc
Confidence 6 99999999999999999999996 99999965 999999999743 23 2111 2578999999999999996
Q ss_pred --cCCchHHHHHHHHHHHHHHhhcCC-CCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCC-CCCHHHHHH
Q 015501 326 --WGRSSAASTAVSIVDAMKSLVTPT-PEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLRKR 401 (405)
Q Consensus 326 --~G~~~~~s~A~~i~~ai~~~~~~~-~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~-~L~~~E~~~ 401 (405)
+|.+.| ++|.++++++++|+.+. +++.++|++ +.+| +| .+++|||+||+||++|++++++ + +|+++|+++
T Consensus 236 ~~kg~t~~-~~a~a~~~ii~ail~~~~~~~~v~~~s-~~~~-~~--~~~v~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~~ 309 (323)
T PLN00106 236 AGAGSATL-SMAYAAARFADACLRGLNGEADVVECS-YVQS-EV--TELPFFASKVRLGRNGVEEVLG-LGPLSEYEQKG 309 (323)
T ss_pred cCCCCchH-HHHHHHHHHHHHHHhccCCCceEEEEE-EECc-cc--CCceEEEEEEEEcCCeeEEEcC-CCCCCHHHHHH
Confidence 466655 58889999999888532 477999999 7777 45 2239999999999999999996 7 999999999
Q ss_pred Hhh
Q 015501 402 IAK 404 (405)
Q Consensus 402 l~~ 404 (405)
|++
T Consensus 310 l~~ 312 (323)
T PLN00106 310 LEA 312 (323)
T ss_pred HHH
Confidence 985
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=1.3e-50 Score=391.24 Aligned_cols=251 Identities=36% Similarity=0.531 Sum_probs=219.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC-cceEEEecCcccccCCCcEEE
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAEWAL 177 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~dADiVI 177 (405)
|+||||+|++|+++++.|+..+... ...|.| +|.+++++++.++||+|+.... ..+++.+++.|++++|||+||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~---~~el~L--~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv 75 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLL---AIELVL--YDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVI 75 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCc---ceEEEE--EeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEE
Confidence 6899977999999999999988311 123444 4556689999999999987544 346666566699999999999
Q ss_pred EeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCC-CCceeecchhhHHHHH
Q 015501 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP-AKNFHALTRLDENRAK 256 (405)
Q Consensus 178 i~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~-~k~ig~gt~LDs~R~~ 256 (405)
++++.++++|++|.+++.+|+++++++++.|+++| |++|+|++|||+|++|++++|++ ++| .|+||+|| ||+.|++
T Consensus 76 ~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d~~t~~~~~~s-g~~~~kviG~~~-ld~~r~~ 152 (263)
T cd00650 76 ITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVDIITYLVWRYS-GLPKEKVIGLGT-LDPIRFR 152 (263)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHh-CCCchhEEEeec-chHHHHH
Confidence 99999999999999999999999999999999998 99999999999999999999998 566 59999999 9999999
Q ss_pred HHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchHHHHHH
Q 015501 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAV 336 (405)
Q Consensus 257 ~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s~A~ 336 (405)
+++|+++++++++|+ .+|||+||++++|+||+++ .+..+.
T Consensus 153 ~~la~~l~v~~~~v~-~~v~G~hg~~~~~~~s~~~---------------------------------------~a~~~~ 192 (263)
T cd00650 153 RILAEKLGVDPDDVK-VYILGEHGGSQVPDWSTVR---------------------------------------IATSIA 192 (263)
T ss_pred HHHHHHhCCCccceE-EEEEEcCCCceEeccccch---------------------------------------HHHHHH
Confidence 999999999999999 5999999999999999975 233444
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 337 SIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 337 ~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.++++ |+ +|++.++|++++++| +||+|+|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 193 ~ii~a---i~--~~~~~~~~v~v~~~g-~ygi~~~~~~s~P~~i~~~Gi~~~~~-~~l~~~e~~~l~~ 253 (263)
T cd00650 193 DLIRS---LL--NDEGEILPVGVRNNG-QIGIPDDVVVSVPCIVGKNGVEEPIE-VGLTDFELEKLQK 253 (263)
T ss_pred HHHHH---HH--cCCCEEEEEEEEeCC-ccCCcCCEEEEEEEEEeCCceEEEec-CCCCHHHHHHHHH
Confidence 55554 44 689999999999999 89988999999999999999999996 9999999999985
No 35
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=7.8e-40 Score=308.16 Aligned_cols=287 Identities=25% Similarity=0.285 Sum_probs=225.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe---cCccccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---INPYELF 170 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~---~~~~eal 170 (405)
.++.||+|.||+|.||+.+...|...++.++ |.|||+. ...|++.||.|..... .+.-. .+.++++
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~-----LaLYDi~----~~~GVaaDlSHI~T~s--~V~g~~g~~~L~~al 94 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLKLNPLVSE-----LALYDIA----NTPGVAADLSHINTNS--SVVGFTGADGLENAL 94 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHhcCcccce-----eeeeecc----cCCcccccccccCCCC--ceeccCChhHHHHHh
Confidence 4579999999999999999999999888764 5555442 5689999999986431 23222 2467899
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHH---HHHCCCCCCCceeec
Q 015501 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHAL 247 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~---~k~s~~~~~k~ig~g 247 (405)
++||+||+.+|.||||||+|.||+..|+.|+++++..+.++| |++.+.++|||+|....++ .|..+.++++.+...
T Consensus 95 ~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~c-P~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGV 173 (345)
T KOG1494|consen 95 KGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCC-PNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGV 173 (345)
T ss_pred cCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhC-ccceeEeecCcccccchHHHHHHHHcCCCCccceece
Confidence 999999999999999999999999999999999999999998 9999999999999765543 566777877666667
Q ss_pred chhhHHHHHHHHHHHhCCCC-CCceeEEEEeec-CCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHh
Q 015501 248 TRLDENRAKCQLALKAGVFY-DKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK 325 (405)
Q Consensus 248 t~LDs~R~~~~lA~~l~v~~-~~V~~~~V~G~H-G~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~ 325 (405)
|.||..|++.++++.++++| ++++ ++|+|.| |.|.+|++|+.. |...+-.+ ..+.++.+++..|.|+.+.
T Consensus 174 TtLDvVRA~tFv~~~~~~~p~~~v~-VPVIGGHaG~TIlPLlSQ~~----p~~~~~~~---~~~~Lt~RiQ~gGtEVV~A 245 (345)
T KOG1494|consen 174 TTLDVVRANTFVAEVLNLDPAEDVD-VPVIGGHAGITIIPLLSQCK----PPFRFTDD---EIEALTHRIQNGGTEVVKA 245 (345)
T ss_pred ehhhhhhHHHHHHHHhCCCchhcCC-cceecCcCCceEeeecccCC----CcccCCHH---HHHHHHHHHHhCCceEEEe
Confidence 88999999999999999999 5577 8999999 569999999987 54433222 2467889999999998875
Q ss_pred cC-CchH-HHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHH
Q 015501 326 WG-RSSA-ASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 402 (405)
Q Consensus 326 ~G-~~~~-~s~A~~i~~ai~~~~~~-~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l 402 (405)
|- ..++ .|.|++-++...+++.+ .++..+.-|+.+-.- .+++| ||+.|+++|++|++++..-.+|+++|++.|
T Consensus 246 KaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~-~~~~~---fFaspv~Lg~~Gv~~v~~l~~lsd~E~~~l 321 (345)
T KOG1494|consen 246 KAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASP-VTELP---FFATPVTLGKKGVEEVLGLGKLSDYEEKAL 321 (345)
T ss_pred ccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEecc-ccCcc---ceeceEEecCCceeeecCCCccCHHHHHHH
Confidence 43 3333 45555544444444433 334555556543222 46764 999999999999999997778999999998
Q ss_pred hh
Q 015501 403 AK 404 (405)
Q Consensus 403 ~~ 404 (405)
++
T Consensus 322 ~~ 323 (345)
T KOG1494|consen 322 EA 323 (345)
T ss_pred HH
Confidence 75
No 36
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=100.00 E-value=1.2e-33 Score=256.99 Aligned_cols=153 Identities=29% Similarity=0.440 Sum_probs=137.2
Q ss_pred chhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhh----ccccHHHHHHHHHhhhHHHH
Q 015501 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD----HKWLEEGFTETIQKRGGLLI 323 (405)
Q Consensus 248 t~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~----~~~~~~el~~~v~~~~~~ii 323 (405)
|.||++||+++||+++|++|++|+ ++||||||++|||+||+++|+|.|+.++... .++..+++.+.+++++++++
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~-~~ViGeHg~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVN-AYVIGEHGDSQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEE-EEEEBSSSTTEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceE-EEEEecCCcceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 789999999999999999999998 5999999999999999999999999876543 23556789999999999999
Q ss_pred HhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCc-eEEEEeEEEcCCCceeeecCCCCCHHHHHHH
Q 015501 324 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAED-IVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 402 (405)
Q Consensus 324 ~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~d-v~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l 402 (405)
+.||++++.++|.++++++++|+ .|++.++|+|++++| +||++.+ +|||+||++|++|+++++++++|+++|+++|
T Consensus 80 ~~k~g~t~~s~A~a~~~~v~ail--~~~~~i~~~sv~~~g-~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l 156 (174)
T PF02866_consen 80 KAKGGSTSYSIAAAAARIVEAIL--KDERRILPVSVYLDG-EYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQEKL 156 (174)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHH--TTHTEEEEEEEEEES-GGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHHHH
T ss_pred eeccccCcCCHHHHHHHHHHHHh--hcccccccceecccc-ccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHHHH
Confidence 99944444568999999999999 578999999999999 7999755 9999999999999999996699999999999
Q ss_pred hh
Q 015501 403 AK 404 (405)
Q Consensus 403 ~~ 404 (405)
++
T Consensus 157 ~~ 158 (174)
T PF02866_consen 157 KE 158 (174)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 37
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=100.00 E-value=3.8e-32 Score=278.22 Aligned_cols=284 Identities=17% Similarity=0.202 Sum_probs=204.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCC-CCc-eEEEeccccchhhhHH---HHHHHhhhhcCCCcceEEEecCcccccC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGP-DQP-IALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYELFE 171 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~-d~~-i~L~l~~~d~~~~~l~---g~a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (405)
+||+|||| ||+.++.|+..-+... +-+ -.|.|+|+|. ++++ ..+..+.+.. ....++..++|..+|++
T Consensus 1 ~KI~iIGg----GS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~Rl~~v~~l~~~~~~~~-g~~~~v~~ttD~~~Al~ 73 (425)
T cd05197 1 VKIAIIGG----GSSFTPELVSGLLKTPEELPISEVTLYDIDE--ERLDIILTIAKRYVEEV-GADIKFEKTMDLEDAII 73 (425)
T ss_pred CEEEEECC----chHhHHHHHHHHHcChhhCCCCEEEEEcCCH--HHHHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHhC
Confidence 69999998 4445555543322111 111 2444555543 4444 3444444433 23346888899999999
Q ss_pred CCcEEEEe---CCc---------CCCCCC---c-----hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHH
Q 015501 172 DAEWALLI---GAK---------PRGPGM---E-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231 (405)
Q Consensus 172 dADiVIi~---~g~---------~~k~g~---~-----r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~ 231 (405)
|||+||.+ ||. |.|.|. + ......+|++++.++++.|+++| |++|+|++|||+|++|++
T Consensus 74 gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin~TNP~di~t~a 152 (425)
T cd05197 74 DADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLNFTNPAGEVTEA 152 (425)
T ss_pred CCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEecCChHHHHHHH
Confidence 99999985 332 335543 2 34556899999999999999997 999999999999999999
Q ss_pred HHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEe-ecCCCcccccccceEcCcchHhhhh----h---
Q 015501 232 CLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIK----D--- 303 (405)
Q Consensus 232 ~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G-~HG~~~vp~~S~a~I~G~p~~~~~~----~--- 303 (405)
+++.+| ..|+||+|+. +.|+++++|+.+|+++++|+. +++| ||| ++||+++++|+++.+.+. +
T Consensus 153 ~~~~~p--~~rviG~c~~--~~r~~~~ia~~lgv~~~~v~~-~v~GlnHg----~~~s~~~~~G~~l~p~l~~~~~~~~~ 223 (425)
T cd05197 153 VRRYVP--PEKAVGLCNV--PIGVMEIVAKLLGESEEKVDW-QYAGLNHG----IWLNRVRYNGGDVTPKLDEWVEEKSK 223 (425)
T ss_pred HHHhCC--CCcEEEECCC--HHHHHHHHHHHhCCCHHHeEE-EEEeccCe----EeeEeEEECCeecHHHHHHHHhccCc
Confidence 998853 2499999999 999999999999999999995 8999 997 999999999988764322 1
Q ss_pred -----c-------ccc------------------------HHH-HHH---------HHHhhhH---HH------------
Q 015501 304 -----H-------KWL------------------------EEG-FTE---------TIQKRGG---LL------------ 322 (405)
Q Consensus 304 -----~-------~~~------------------------~~e-l~~---------~v~~~~~---~i------------ 322 (405)
. .|. .++ +.+ .+.+... +.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~ 303 (425)
T cd05197 224 DWKTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVE 303 (425)
T ss_pred cccccccccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChhh
Confidence 0 010 000 000 0111100 01
Q ss_pred HHhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHH
Q 015501 323 IKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 402 (405)
Q Consensus 323 i~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l 402 (405)
...+|...++..|+.|+++|. +|++.++.++|.++|..-++|+|.++++||+++++|+.++-- .+|.+.....+
T Consensus 304 ~~~r~~~~~~e~a~~ii~ai~-----~~~~~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~v-g~lp~~~~~Li 377 (425)
T cd05197 304 LIKRGGRKYSEAAIPLIRALL-----NDNGARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKV-GPLDRFVKGLL 377 (425)
T ss_pred hhhcCCcccHHHHHHHHHHHH-----cCCCeEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccc-CCCCHHHHHHH
Confidence 112344556788889988888 789999999999999888999999999999999999999764 57887766655
Q ss_pred h
Q 015501 403 A 403 (405)
Q Consensus 403 ~ 403 (405)
+
T Consensus 378 ~ 378 (425)
T cd05197 378 R 378 (425)
T ss_pred H
Confidence 4
No 38
>PRK15076 alpha-galactosidase; Provisional
Probab=100.00 E-value=2.9e-31 Score=272.52 Aligned_cols=282 Identities=16% Similarity=0.131 Sum_probs=207.6
Q ss_pred CCEEEEEcCCCchHHHHHH--HHH-hcccCCCCCceEEEeccccchhhhHH-HHHHHhhhhcCC--CcceEEEecCcccc
Q 015501 96 MVNIAVSGAAGMIANHLLF--KLA-AGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFP--LLREVKIGINPYEL 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~--~L~-~~~~~~~d~~i~L~l~~~d~~~~~l~-g~a~DL~d~~~~--~~~~v~i~~~~~ea 169 (405)
|+||+|||| |++|++.++ .++ ..++.+ .+|.| +|+++++++ +.++ +.+.... ...+++.+++.+++
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~--~evvL----vDid~er~~~~~~l-~~~~~~~~~~~~~i~~ttD~~ea 72 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRD--AEIAL----MDIDPERLEESEIV-ARKLAESLGASAKITATTDRREA 72 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCC--CEEEE----ECCCHHHHHHHHHH-HHHHHHhcCCCeEEEEECCHHHH
Confidence 579999995 999998777 776 334433 13544 455556666 4444 5554312 22356666777999
Q ss_pred cCCCcEEEEeCCcC-CCCC--------------Cchhhh--------HHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 170 FEDAEWALLIGAKP-RGPG--------------MERAGL--------LDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 170 l~dADiVIi~~g~~-~k~g--------------~~r~~l--------l~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
++|||+||++.+.+ ++++ ++|.+. +.+|+++++++++.|+++| |+||+|++|||+|
T Consensus 73 l~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~-p~a~iin~tNP~d 151 (431)
T PRK15076 73 LQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVC-PDALLLNYVNPMA 151 (431)
T ss_pred hCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHC-CCeEEEEcCChHH
Confidence 99999999987765 4444 456677 8999999999999999998 9999999999999
Q ss_pred HHHHHHHHHCCCCCCCceeec-chhhHHHHHHHHHHHhCCCCCCceeEEEEe-ecCCCcccccccceEcCcchHhhhhh-
Q 015501 227 TNALICLKNAPSIPAKNFHAL-TRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD- 303 (405)
Q Consensus 227 ~~t~~~~k~s~~~~~k~ig~g-t~LDs~R~~~~lA~~l~v~~~~V~~~~V~G-~HG~~~vp~~S~a~I~G~p~~~~~~~- 303 (405)
++|++++++ + +.|+||+| +.+|+. +.+|+.+|+++++|+. ++.| || +.||.+.+.+|+.+...+.+
T Consensus 152 ivt~~~~~~-~--~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~-~~~GlNH----~~W~~~~~~~G~D~~p~l~~~ 220 (431)
T PRK15076 152 MNTWAMNRY-P--GIKTVGLCHSVQGTA---EQLARDLGVPPEELRY-RCAGINH----MAWYLELERKGEDLYPELRAA 220 (431)
T ss_pred HHHHHHhcC-C--CCCEEEECCCHHHHH---HHHHHHhCCCHHHeEE-EEEeecc----hhhheeeeECCcchHHHHHHH
Confidence 999999743 2 24999999 999986 8899999999999995 8899 99 88999999988765432211
Q ss_pred ---c-------------------------------ccc----HHHHHHHHH-------hhh-------HHHH-HhcCC--
Q 015501 304 ---H-------------------------------KWL----EEGFTETIQ-------KRG-------GLLI-KKWGR-- 328 (405)
Q Consensus 304 ---~-------------------------------~~~----~~el~~~v~-------~~~-------~~ii-~~~G~-- 328 (405)
. .|. .++..+... +++ .+.. ...+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (431)
T PRK15076 221 AAEGQTRCQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAER 300 (431)
T ss_pred HhccCchhcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCCc
Confidence 0 011 111111110 011 1111 22333
Q ss_pred ---chHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHh
Q 015501 329 ---SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 403 (405)
Q Consensus 329 ---~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~ 403 (405)
..++..|+.|+++|. +|++.++.++|.++|..-++|+|.++++||+++++|+.++.. .+|.+..+..++
T Consensus 301 ~~~~~~~e~a~~ii~ai~-----~~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~-g~lP~~~~~l~~ 372 (431)
T PRK15076 301 IEIKRSREYASTIIEAIE-----TGEPSVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKV-GDLPPQLAALNR 372 (431)
T ss_pred cccccchHHHHHHHHHHh-----cCCceEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeec-CCCCHHHHHHHH
Confidence 235677888888887 789999999999999888999999999999999999999874 689888877765
No 39
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.98 E-value=1.7e-30 Score=265.66 Aligned_cols=285 Identities=19% Similarity=0.192 Sum_probs=205.1
Q ss_pred CEEEEEcCCCchHH-HHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHH---HHHhhhhcCCCcceEEEecCcccccC
Q 015501 97 VNIAVSGAAGMIAN-HLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGV---AMELEDSLFPLLREVKIGINPYELFE 171 (405)
Q Consensus 97 ~KI~IIGAaG~VGs-~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~---a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (405)
+||+|||| |++-. .+...|+.. .-++ .. .|.|+|+|. +++++.. +.++.+.. ....++..+++..+|++
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~-~~--ei~L~Did~-~~rl~~v~~~~~~~~~~~-~~~~~v~~t~d~~~al~ 74 (419)
T cd05296 1 MKLTIIGG-GSSYTPELIEGLIRRYEELP-VT--ELVLVDIDE-EEKLEIVGALAKRMVKKA-GLPIKVHLTTDRREALE 74 (419)
T ss_pred CEEEEECC-chHhHHHHHHHHHhccccCC-CC--EEEEecCCh-HHHHHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHhC
Confidence 69999997 44311 133344442 2122 12 445566663 5666543 33333332 22346777899999999
Q ss_pred CCcEEEEeCCcCCCCCCchh--------------------hhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHH
Q 015501 172 DAEWALLIGAKPRGPGMERA--------------------GLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~--------------------~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~ 231 (405)
|||+||++.+..+.+++++. ....+|++++.++++.|+++| |+||+|++|||+|++|++
T Consensus 75 gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~-Pda~lin~TNP~~ivt~a 153 (419)
T cd05296 75 GADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELA-PDAWLINFTNPAGIVTEA 153 (419)
T ss_pred CCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHC-CCeEEEEecCHHHHHHHH
Confidence 99999998655444444333 236899999999999999998 999999999999999999
Q ss_pred HHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEe-ecCCCcccccccceEcCcchHh-hhh-------
Q 015501 232 CLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKE-IIK------- 302 (405)
Q Consensus 232 ~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G-~HG~~~vp~~S~a~I~G~p~~~-~~~------- 302 (405)
+++.+ +.|+||+|+. +.|+++++|+.+|+++++|+. +++| || +.|+.+.+.+|+.+.. ++.
T Consensus 154 ~~k~~---~~rviGlc~~--~~r~~~~ia~~lg~~~~~v~~-~v~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~~~~ 223 (419)
T cd05296 154 VLRHT---GDRVIGLCNV--PIGLQRRIAELLGVDPEDVFI-DYAGLNH----LGWLRRVLLDGEDVLPELLEDLAALLS 223 (419)
T ss_pred HHHhc---cCCEEeeCCc--HHHHHHHHHHHhCCCHHHceE-EEEeccc----ceeeeeeeECCcccHHHHHHHhhhccc
Confidence 99876 4699999987 699999999999999999995 8999 99 8899999988876553 111
Q ss_pred ---hcccc--------------------HHHHHHH-HH---hhh-------HHH---------------HHhcCCchHHH
Q 015501 303 ---DHKWL--------------------EEGFTET-IQ---KRG-------GLL---------------IKKWGRSSAAS 333 (405)
Q Consensus 303 ---~~~~~--------------------~~el~~~-v~---~~~-------~~i---------------i~~~G~~~~~s 333 (405)
+..|. .++..+. .. .++ .++ +..+++..|+.
T Consensus 224 ~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~~y~e 303 (419)
T cd05296 224 FEEGLLFGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGAGYSE 303 (419)
T ss_pred cccccchHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCcchHH
Confidence 00010 0111111 00 011 111 12445555778
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 334 ~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.|..++++|. +|++.++.++|.++|..-++|+|+++++||+++++|+.++-. -+|.+.....++.
T Consensus 304 ~a~~ii~ai~-----~~~~~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~v-g~lP~~~~~l~~~ 368 (419)
T cd05296 304 AALALISAIY-----NDKGDIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLPV-GPLPPAILGLIQQ 368 (419)
T ss_pred HHHHHHHHHh-----cCCCcEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccC-CCCCHHHHHHHHH
Confidence 8899988888 789999999999999888999999999999999999999754 5788888776653
No 40
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=99.98 E-value=6.5e-32 Score=237.69 Aligned_cols=141 Identities=31% Similarity=0.450 Sum_probs=127.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||||+|+||+++++.|+.+++.++ |.| +|+++++++|+++||+|+.+.+..++.++.++|++++|||+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~e---i~L----~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDiv 73 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADE---IVL----IDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIV 73 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSE---EEE----EESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCc---eEE----eccCcccceeeehhhhhhhhhcccccccccccccccccccEE
Confidence 6999999779999999999999998764 555 567778999999999999866656788888999999999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCcee
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig 245 (405)
|+++|.|++||++|.+++..|+++++++++.|++++ |+++++++|||+|++|++++++++..|+|+||
T Consensus 74 vitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd~~t~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 74 VITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVDVMTYVAQKYSGFPPNKVIG 141 (141)
T ss_dssp EETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHHHHHHHHHHHHTSSGGGEEE
T ss_pred EEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHHHHHHHHHHhhCcCcccCcC
Confidence 999999999999999999999999999999999997 99999999999999999999999655558887
No 41
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.97 E-value=2.4e-28 Score=250.75 Aligned_cols=279 Identities=14% Similarity=0.136 Sum_probs=195.6
Q ss_pred CEEEEEcCCCchHHHHHHHHH----hcc-cCCCCCceEEEeccccchhhhHH---HHHHHhhhhcCCCcceEEEecCccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLA----AGE-VLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYE 168 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~----~~~-~~~~d~~i~L~l~~~d~~~~~l~---g~a~DL~d~~~~~~~~v~i~~~~~e 168 (405)
|||+|||| ||+.++.|+ ... .++ ..+|. |+|+| +++++ ..+..+.+.. ....+++.|+|..|
T Consensus 1 ~KI~iIGa----GS~~tp~li~~l~~~~~~l~-~~ei~--L~DId--~~rl~~v~~l~~~~~~~~-g~~~~v~~Ttdr~e 70 (437)
T cd05298 1 FKIVIAGG----GSTYTPGIVKSLLDRKEDFP-LRELV--LYDID--AERQEKVAEAVKILFKEN-YPEIKFVYTTDPEE 70 (437)
T ss_pred CeEEEECC----cHHHHHHHHHHHHhCcccCC-CCEEE--EECCC--HHHHHHHHHHHHHHHHhh-CCCeEEEEECCHHH
Confidence 69999998 444544444 331 122 12344 54444 34444 3344444433 33347888899999
Q ss_pred ccCCCcEEEEe---CCc---------CCCCCC---c-----hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 015501 169 LFEDAEWALLI---GAK---------PRGPGM---E-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (405)
Q Consensus 169 al~dADiVIi~---~g~---------~~k~g~---~-----r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (405)
|++|||+||.+ ||. |.|+|. + ......||++++.++++.|+++| |+||+|++|||+|++
T Consensus 71 Al~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~-pda~lin~tNP~~~v 149 (437)
T cd05298 71 AFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYS-PDAWILNYSNPAAIV 149 (437)
T ss_pred HhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEEecCcHHHH
Confidence 99999999985 332 345553 2 33457899999999999999998 999999999999999
Q ss_pred HHHHHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEe-ecCCCcccccccceEc-CcchHhhhh----
Q 015501 229 ALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARIN-GLPVKEIIK---- 302 (405)
Q Consensus 229 t~~~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G-~HG~~~vp~~S~a~I~-G~p~~~~~~---- 302 (405)
|+++++..+. .|+||.|.. ..-++..+|+.+|+++++|+ +-+.| || +.|+.+.+.+ |+.+...+.
T Consensus 150 t~~~~~~~~~--~kviGlC~~--~~~~~~~la~~lg~~~~~v~-~~~~GlNH----~~w~~~~~~~~G~D~~p~l~e~~~ 220 (437)
T cd05298 150 AEALRRLFPN--ARILNICDM--PIAIMDSMAAILGLDRKDLE-PDYFGLNH----FGWFTKIYDKQGEDLLPKLREHVK 220 (437)
T ss_pred HHHHHHHCCC--CCEEEECCc--HHHHHHHHHHHhCCCHHHce-EEEEeecc----hhhhhheEECCCCchHHHHHHHHh
Confidence 9999887432 499999987 67789999999999999999 47799 99 8899999999 877653322
Q ss_pred hcc--------------cc---------------------------HHHHHHH-----------HHhhhHHHH-------
Q 015501 303 DHK--------------WL---------------------------EEGFTET-----------IQKRGGLLI------- 323 (405)
Q Consensus 303 ~~~--------------~~---------------------------~~el~~~-----------v~~~~~~ii------- 323 (405)
+.. |. .++..+. +++...+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~ 300 (437)
T cd05298 221 ENGYLPPDSDEEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKII 300 (437)
T ss_pred ccCCCcccccccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhh
Confidence 111 10 0011011 111111110
Q ss_pred --------HhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCccc-CCCCceEEEEeEEEcCCCceeeecCCCC
Q 015501 324 --------KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIF 394 (405)
Q Consensus 324 --------~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~y-gi~~dv~~s~P~~ig~~Gv~~iv~~~~L 394 (405)
..++. .+++.+..++++|. +|++.++++||+++| .| ++|+|+++|+||+||++|+.++.- .+|
T Consensus 301 ~~~~~~~~~~~~~-~ya~~a~~ii~aI~-----~d~~~~~~vnv~n~G-~i~nL~~d~~vevP~~v~~~Gi~pi~v-g~l 372 (437)
T cd05298 301 ETGTAEGSTFHVD-VHGEYIVDLAASIA-----YNTKERFLVIVENNG-AIPNLPDDAMVEVPAYIGSNGPEPLVV-GKI 372 (437)
T ss_pred hcCChhhhhhhcc-chHHHHHHHHHHHH-----cCCCeEEEEEeecCC-ccCCCCCCcEEEEEEEEeCCCceeccc-CCC
Confidence 11221 14566667767766 799999999999999 56 578999999999999999999864 578
Q ss_pred CHHHHHHHh
Q 015501 395 DDYLRKRIA 403 (405)
Q Consensus 395 ~~~E~~~l~ 403 (405)
.+.....++
T Consensus 373 P~~~~~l~~ 381 (437)
T cd05298 373 PTFYKGLME 381 (437)
T ss_pred CHHHHHHHH
Confidence 888777654
No 42
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.97 E-value=2.9e-28 Score=250.31 Aligned_cols=283 Identities=16% Similarity=0.113 Sum_probs=212.3
Q ss_pred CEEEEEcCCCchHHHHHH--HHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC--CcceEEEecCcccccC
Q 015501 97 VNIAVSGAAGMIANHLLF--KLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--LLREVKIGINPYELFE 171 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~--~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~--~~~~v~i~~~~~eal~ 171 (405)
+||+|||| |.+|++++. .++.. .+.+ .+|.| .|+++++++....++.+.... ...+++.+++.+++++
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g--~eV~L----~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~ 73 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSG--STIAL----MDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALD 73 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCC--CEEEE----ECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhc
Confidence 58999995 999999777 56644 3333 24555 466778888888877665422 2246777778889999
Q ss_pred CCcEEEEeCCcCCCCCCch----------------------hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHH
Q 015501 172 DAEWALLIGAKPRGPGMER----------------------AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r----------------------~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t 229 (405)
|||+||++.+....++.++ .....+|++++.++++.+.++| |++|++++|||++++|
T Consensus 74 ~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~-p~a~~i~~tNPv~i~t 152 (423)
T cd05297 74 GADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELC-PDAWLLNYANPMAELT 152 (423)
T ss_pred CCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHC-CCCEEEEcCChHHHHH
Confidence 9999999866444444333 4567899999999999999997 9999999999999999
Q ss_pred HHHHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEe-ecCCCcccccccceEcCcchHhhhhh---c-
Q 015501 230 LICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD---H- 304 (405)
Q Consensus 230 ~~~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G-~HG~~~vp~~S~a~I~G~p~~~~~~~---~- 304 (405)
+++++.++ .|+||+|+. +.|++..+|+.+|+++++|+. +++| || +.||...+.+|+.+.+.+.+ +
T Consensus 153 ~~~~k~~~---~rviG~c~~--~~~~~~~~a~~l~~~~~~v~~-~~~GlNH----~~w~~~~~~~G~d~~p~l~~~~~~~ 222 (423)
T cd05297 153 WALNRYTP---IKTVGLCHG--VQGTAEQLAKLLGEPPEEVDY-QVAGINH----MAWLLKFEYNGEDLYPLLDEWIEEG 222 (423)
T ss_pred HHHHHhCC---CCEEEECCc--HHHHHHHHHHHhCCCHHHeEE-EEEeecc----HhhhhhheECCcchHHHHHHHHhcc
Confidence 99999875 599999988 899999999999999999995 8899 99 88999999988766533221 0
Q ss_pred --c------cc-----------H------HHH------H-HHHHh-----------------hhHH-H----------HH
Q 015501 305 --K------WL-----------E------EGF------T-ETIQK-----------------RGGL-L----------IK 324 (405)
Q Consensus 305 --~------~~-----------~------~el------~-~~v~~-----------------~~~~-i----------i~ 324 (405)
. |. . .+. . +.+.. .-+. . ..
T Consensus 223 ~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (423)
T cd05297 223 SEEWDQLSPVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEE 302 (423)
T ss_pred CccchhcccchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhccchhcchh
Confidence 0 00 0 000 0 00000 0000 0 01
Q ss_pred hcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHh
Q 015501 325 KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 403 (405)
Q Consensus 325 ~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~ 403 (405)
..+...++..|+.++++|. +|++.++.++|.++|..-|+|+|.++++||+|+++|+.++-. .+|.+.....++
T Consensus 303 ~~~~~~~~e~a~~ii~ai~-----~~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~-g~lp~~~~~l~~ 375 (423)
T cd05297 303 LDPVKRSGEYASPIIEALV-----TGKPRRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKI-GPLPPQLAALIR 375 (423)
T ss_pred ccccccchHHHHHHHHHHh-----cCCceEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceeccc-CCCCHHHHHHHH
Confidence 1222335677888888887 789999999999999888999999999999999999999764 678888777654
No 43
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.95 E-value=5.2e-27 Score=236.89 Aligned_cols=286 Identities=18% Similarity=0.217 Sum_probs=204.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCC-Cc-eEEEeccccchhhhHHH---HHHHhhhhcCCCcceEEEecCcccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPD-QP-IALKLLGSERSLQALEG---VAMELEDSLFPLLREVKIGINPYEL 169 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d-~~-i~L~l~~~d~~~~~l~g---~a~DL~d~~~~~~~~v~i~~~~~ea 169 (405)
+..||+|||| ||+..+.++.+.+...+ -+ ..|.|+|+| +++++. .+..|.+.. ....++..+++..+|
T Consensus 2 ~~~KI~iIGg----GSt~tp~~v~g~l~~~e~l~~~el~L~Did--~~r~~~i~~~~~~~v~~~-g~~~kv~~ttd~~eA 74 (442)
T COG1486 2 KKFKIVIIGG----GSTYTPKLLLGDLARTEELPVRELALYDID--EERLKIIAILAKKLVEEA-GAPVKVEATTDRREA 74 (442)
T ss_pred CcceEEEECC----CccccHHHHHHHHhcCccCCcceEEEEeCC--HHHHHHHHHHHHHHHHhh-CCCeEEEEecCHHHH
Confidence 4579999998 55555555554443221 11 255565554 455552 222232222 233567888999999
Q ss_pred cCCCcEEEEe---CC---------cCCCCCCc--------hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHH
Q 015501 170 FEDAEWALLI---GA---------KPRGPGME--------RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (405)
Q Consensus 170 l~dADiVIi~---~g---------~~~k~g~~--------r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t 229 (405)
|+|||||+.+ |+ .|.|+|.- ......|+++++.+|++.|+++| |+||++++|||+.++|
T Consensus 75 l~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~-P~Aw~lNytNP~~~vT 153 (442)
T COG1486 75 LEGADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVC-PNAWMLNYTNPAAIVT 153 (442)
T ss_pred hcCCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhC-CCceEEeccChHHHHH
Confidence 9999999985 33 34555532 22345799999999999999998 9999999999999999
Q ss_pred HHHHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCC-CCceeEEEEe-ecCCCcccccccceEcCcchHhhh-h---h
Q 015501 230 LICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFY-DKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEII-K---D 303 (405)
Q Consensus 230 ~~~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~-~~V~~~~V~G-~HG~~~vp~~S~a~I~G~p~~~~~-~---~ 303 (405)
.++.++.+. -|+||.|.+ ..-....||+.||+.+ ++++ +-+.| || +.||..++.+|.++.+-+ . +
T Consensus 154 eAv~r~~~~--~K~VGlCh~--~~g~~~~lAe~L~~~~~~~l~-~~~aGlNH----~~w~~~~~~~G~d~~p~l~~~~~~ 224 (442)
T COG1486 154 EAVRRLYPK--IKIVGLCHG--PIGIAMELAEVLGLEPREDLR-YRVAGLNH----MVWILRVRDDGEDLYPELLEALEE 224 (442)
T ss_pred HHHHHhCCC--CcEEeeCCc--hHHHHHHHHHHhCCCchhcee-EEEeechh----hhhhhHhhhcCccchHHHHHHHhc
Confidence 999998752 299999988 6788999999999975 9998 57899 99 888988888886543211 1 0
Q ss_pred c--------------ccc-----------------------------HHHH------HHHHHhhhHHH------------
Q 015501 304 H--------------KWL-----------------------------EEGF------TETIQKRGGLL------------ 322 (405)
Q Consensus 304 ~--------------~~~-----------------------------~~el------~~~v~~~~~~i------------ 322 (405)
. .|. .+++ .+.+.++..+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~ 304 (442)
T COG1486 225 GGSPSEPENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEK 304 (442)
T ss_pred cccCCccccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcC
Confidence 0 010 0001 01122211111
Q ss_pred ---HHhcCCc--hHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHH
Q 015501 323 ---IKKWGRS--SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDY 397 (405)
Q Consensus 323 ---i~~~G~~--~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~ 397 (405)
..+++.+ .++..|+.|+++|. +|++.++.++|.++|..-++|+|.++++||+++++|+.++.. ..|.+.
T Consensus 305 p~~~~~~~~~~~~~~e~a~~ii~Ai~-----~~~~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~-g~lP~~ 378 (442)
T COG1486 305 PEELEKRIGAGKYSSEYASNIINAIE-----NNKPSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAV-GDLPEF 378 (442)
T ss_pred chhhhhcCCcccccHHHHHHHHHHHh-----cCCceEEEEEcCCCccccCCCCCeEEEeeEEecCCCCccccc-CCCCHH
Confidence 1234443 55778899998888 899999999999999989999999999999999999999874 899998
Q ss_pred HHHHHh
Q 015501 398 LRKRIA 403 (405)
Q Consensus 398 E~~~l~ 403 (405)
....+.
T Consensus 379 ~~~l~~ 384 (442)
T COG1486 379 VKGLMH 384 (442)
T ss_pred HHHHHH
Confidence 887665
No 44
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.77 E-value=4.2e-18 Score=155.41 Aligned_cols=156 Identities=19% Similarity=0.150 Sum_probs=111.4
Q ss_pred EEEEEcCCCchHHH-HHH-HHHhcccCCCCCceEEEeccccchhhhHH---HHHHHhhhhcCCCcceEEEecCcccccCC
Q 015501 98 NIAVSGAAGMIANH-LLF-KLAAGEVLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYELFED 172 (405)
Q Consensus 98 KI~IIGAaG~VGs~-la~-~L~~~~~~~~d~~i~L~l~~~d~~~~~l~---g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (405)
||+|||| |++-.. ... .+...+-++. -.+.|+|+ ++++|+ ..+..+.+.. ....+++.++|..||++|
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~---~ei~L~Di--d~~RL~~~~~~~~~~~~~~-~~~~~v~~ttd~~eAl~g 73 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELSG---SEIVLMDI--DEERLEIVERLARRMVEEA-GADLKVEATTDRREALEG 73 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTSTE---EEEEEE-S--CHHHHHHHHHHHHHHHHHC-TTSSEEEEESSHHHHHTT
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCCC---cEEEEEcC--CHHHHHHHHHHHHHHHHhc-CCCeEEEEeCCHHHHhCC
Confidence 8999997 666655 222 3333333321 24555544 446666 4445454443 334578889999999999
Q ss_pred CcEEEEeC---C---------cCCCCCCc----------hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHH
Q 015501 173 AEWALLIG---A---------KPRGPGME----------RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (405)
Q Consensus 173 ADiVIi~~---g---------~~~k~g~~----------r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~ 230 (405)
||+||.+. + .|.+.|.. ......|+++++.++++.|+++| |+||+||+|||+.++|.
T Consensus 74 ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~-PdAw~iNytNP~~~vt~ 152 (183)
T PF02056_consen 74 ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELC-PDAWLINYTNPMGIVTE 152 (183)
T ss_dssp ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHT-TTSEEEE-SSSHHHHHH
T ss_pred CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEeccChHHHHHH
Confidence 99999863 2 35666642 33457899999999999999998 99999999999999999
Q ss_pred HHHHHCCCCCCCceeecchhhHHHHHHHHHHHhCC
Q 015501 231 ICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGV 265 (405)
Q Consensus 231 ~~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v 265 (405)
++.+.+++. |++|.|.. ..-+...+|+.||+
T Consensus 153 a~~r~~~~~--k~vGlCh~--~~~~~~~la~~L~~ 183 (183)
T PF02056_consen 153 ALSRYTPKI--KVVGLCHG--PQGTRRQLAKLLGM 183 (183)
T ss_dssp HHHHHSTTS--EEEEE-SH--HHHHHHHHHHHHT-
T ss_pred HHHHhCCCC--CEEEECCC--HHHHHHHHHHHhCc
Confidence 999988654 89999988 67889999999874
No 45
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.39 E-value=1.3e-06 Score=80.04 Aligned_cols=121 Identities=18% Similarity=0.166 Sum_probs=71.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh----h---c-C------CCcceEEEe
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----S---L-F------PLLREVKIG 163 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d----~---~-~------~~~~~v~i~ 163 (405)
||+|||| |.+|..+|..++..|+ ++.| +|.+.+.++.....+.+ . . . ....+++++
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~-----~V~l----~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 70 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY-----EVTL----YDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT 70 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS-----EEEE----E-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC-----cEEE----EECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc
Confidence 7999995 9999999999999875 4655 34454444322211111 1 0 0 112467776
Q ss_pred cCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCc
Q 015501 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN 243 (405)
Q Consensus 164 ~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ 243 (405)
++ ++++.+||+||-+. .++.++-+++-..+.++|+|++++ .||....-..-+.... ..|.|.
T Consensus 71 ~d-l~~~~~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTSsl~i~~la~~~-~~p~R~ 132 (180)
T PF02737_consen 71 TD-LEEAVDADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTSSLSISELAAAL-SRPERF 132 (180)
T ss_dssp SS-GGGGCTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--SSS-HHHHHTTS-STGGGE
T ss_pred cC-HHHHhhhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCCCCCHHHHHhcc-CcCceE
Confidence 65 55555999999763 235788889999999999788886 7775543332232333 244465
Q ss_pred eee
Q 015501 244 FHA 246 (405)
Q Consensus 244 ig~ 246 (405)
+|+
T Consensus 133 ig~ 135 (180)
T PF02737_consen 133 IGM 135 (180)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 46
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.32 E-value=3e-06 Score=83.11 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=68.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh----hcC-C---------Ccc
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----SLF-P---------LLR 158 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d----~~~-~---------~~~ 158 (405)
+..+.||+|||| |.+|..+|..++..|. ++.| +|++++.++.....+.. ... . ...
T Consensus 2 ~~~~~~V~ViGa-G~mG~~iA~~~a~~G~-----~V~l----~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~ 71 (286)
T PRK07819 2 SDAIQRVGVVGA-GQMGAGIAEVCARAGV-----DVLV----FETTEELATAGRNRIEKSLERAVSRGKLTERERDAALA 71 (286)
T ss_pred CCCccEEEEEcc-cHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHh
Confidence 345679999995 9999999999998875 3555 45555554432111111 100 0 113
Q ss_pred eEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhc-CCCeEEEEeCCchh
Q 015501 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA-SRNVKVIVVGNPCN 226 (405)
Q Consensus 159 ~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a-~p~a~vIvvtNP~d 226 (405)
+++.++ +++++++||+||-+. .++.++-+++-..+.++| +|++++ +||-..
T Consensus 72 ~l~~~~-~~~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~ 123 (286)
T PRK07819 72 RLRFTT-DLGDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSS 123 (286)
T ss_pred CeEeeC-CHHHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCC
Confidence 455554 458899999999873 224566677777888887 677766 666443
No 47
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.28 E-value=6.9e-06 Score=81.88 Aligned_cols=124 Identities=11% Similarity=0.087 Sum_probs=77.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh----hhh--c----CCCcceEEEecC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL----EDS--L----FPLLREVKIGIN 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL----~d~--~----~~~~~~v~i~~~ 165 (405)
..||+|||| |.||+.+|..++..|+ ++.+ .|++++.++.....+ ... . .....+++..++
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~-----~V~l----~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 76 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGL-----DVVA----WDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVAT 76 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCC
Confidence 478999995 9999999999998875 3555 344444333211111 111 0 001134566666
Q ss_pred cccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCcee
Q 015501 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig 245 (405)
..+++++||+|+.+. | +|.++-+++-..+.++++|++ |+.||-......-+.... ..|.|.+|
T Consensus 77 l~~av~~aDlViEav--p------------E~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s~la~~~-~~p~R~~g 139 (321)
T PRK07066 77 IEACVADADFIQESA--P------------EREALKLELHERISRAAKPDA--IIASSTSGLLPTDFYARA-THPERCVV 139 (321)
T ss_pred HHHHhcCCCEEEECC--c------------CCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHHHHHHhc-CCcccEEE
Confidence 668899999999863 2 245677777788888886677 568887765444444433 34455555
Q ss_pred e
Q 015501 246 A 246 (405)
Q Consensus 246 ~ 246 (405)
+
T Consensus 140 ~ 140 (321)
T PRK07066 140 G 140 (321)
T ss_pred E
Confidence 3
No 48
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.14 E-value=2e-05 Score=74.19 Aligned_cols=103 Identities=21% Similarity=0.129 Sum_probs=66.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcC--CCcceEEEecCcccccCCCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~--~~~~~v~i~~~~~eal~dAD 174 (405)
|||+|||++|.+|++++..|+..+. ++.+ .+++.++++..+.+..+... ....++.. ++..++++++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~-----~V~v----~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~-~~~~ea~~~aD 70 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN-----KIII----GSRDLEKAEEAAAKALEELGHGGSDIKVTG-ADNAEAAKRAD 70 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-----EEEE----EEcCHHHHHHHHHHHHhhccccCCCceEEE-eChHHHHhcCC
Confidence 5899998569999999999998762 3544 46666777666555433210 11112222 35678899999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
+||++.. .+.+.++.+.+.... .+..||-++||.+
T Consensus 71 vVilavp----------------~~~~~~~l~~l~~~l-~~~vvI~~~ngi~ 105 (219)
T TIGR01915 71 VVILAVP----------------WDHVLKTLESLRDEL-SGKLVISPVVPLA 105 (219)
T ss_pred EEEEECC----------------HHHHHHHHHHHHHhc-cCCEEEEeccCce
Confidence 9998843 133344444554443 3467888999975
No 49
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.14 E-value=1.9e-05 Score=77.34 Aligned_cols=105 Identities=20% Similarity=0.266 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh---hhh---cCCC---------cceE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL---EDS---LFPL---------LREV 160 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL---~d~---~~~~---------~~~v 160 (405)
++||+|||+ |.+|..+|..++..|. ++.+ +|++++.++.....+ .+. .... ..++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~-----~V~l----~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF-----DVTI----YDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRI 72 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCe
Confidence 579999995 9999999999998764 3555 344444443221111 110 0000 1356
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 161 ~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
+++++..+++++||+||.+.. .+.++.+++.+.+.++++++++| ++|...
T Consensus 73 ~~~~d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~sntSt 122 (287)
T PRK08293 73 TLTTDLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF--ATNSST 122 (287)
T ss_pred EEeCCHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE--EECccc
Confidence 666666678999999998732 12456667777777877556654 445443
No 50
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.11 E-value=1.4e-05 Score=78.92 Aligned_cols=142 Identities=17% Similarity=0.135 Sum_probs=89.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHH---HHHHh-hhhc-----C-----CCcceEE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAMEL-EDSL-----F-----PLLREVK 161 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g---~a~DL-~d~~-----~-----~~~~~v~ 161 (405)
.+||+|||| |.+|+.+|..++..|+ ++.| .|++++.++. .+... .... . ..+..++
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~-----~V~l----~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~ 72 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY-----DVVL----KDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARIT 72 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC-----ceEE----EeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhcc
Confidence 579999995 9999999999999654 3655 3444343321 11111 1110 0 0112333
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC
Q 015501 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA 241 (405)
Q Consensus 162 i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~ 241 (405)
. +.+++++++||+||-+. .+|.++-+++-..+.++++|++++ .||...+.-..+.+.+ ..|.
T Consensus 73 ~-~~~~~~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl~it~ia~~~-~rpe 134 (307)
T COG1250 73 P-TTDLAALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSLSITELAEAL-KRPE 134 (307)
T ss_pred c-cCchhHhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCCCHHHHHHHh-CCch
Confidence 3 34567999999999763 346788899999999999888887 8997754433333333 3445
Q ss_pred Cceeec------------------chhhHHHHHHHHHHHhCC
Q 015501 242 KNFHAL------------------TRLDENRAKCQLALKAGV 265 (405)
Q Consensus 242 k~ig~g------------------t~LDs~R~~~~lA~~l~v 265 (405)
|.+|+. |.=++...-..+++++|-
T Consensus 135 r~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK 176 (307)
T COG1250 135 RFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGK 176 (307)
T ss_pred hEEEEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 655543 333555666677777773
No 51
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.10 E-value=3.4e-05 Score=71.85 Aligned_cols=124 Identities=26% Similarity=0.277 Sum_probs=79.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
||+++|+| +|++|+.++..++..+. ++.+ ..-+.++++++.+..+.-. + ......+|.+.||+
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~-----eV~i---gs~r~~~~~~a~a~~l~~~-------i-~~~~~~dA~~~aDV 63 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGH-----EVII---GSSRGPKALAAAAAALGPL-------I-TGGSNEDAAALADV 63 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCC-----eEEE---ecCCChhHHHHHHHhhccc-------c-ccCChHHHHhcCCE
Confidence 78999999 59999999999998774 4554 1234455666555544321 1 23457899999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh---------------HHHHHHHHHCCCCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---------------TNALICLKNAPSIP 240 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d---------------~~t~~~~k~s~~~~ 240 (405)
||++ .|. +-+.++.+.++..- .+-+||-.|||.+ .-+.+++++.|+
T Consensus 64 VvLA--VP~--------------~a~~~v~~~l~~~~-~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~-- 124 (211)
T COG2085 64 VVLA--VPF--------------EAIPDVLAELRDAL-GGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPG-- 124 (211)
T ss_pred EEEe--ccH--------------HHHHhHHHHHHHHh-CCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCC--
Confidence 9998 332 33445555555532 3668999999942 345566666543
Q ss_pred CCceeecchhhHHHH
Q 015501 241 AKNFHALTRLDENRA 255 (405)
Q Consensus 241 ~k~ig~gt~LDs~R~ 255 (405)
.|++.+-+.+...++
T Consensus 125 akVVkAFn~i~a~~l 139 (211)
T COG2085 125 AKVVKAFNTIPAAVL 139 (211)
T ss_pred cchhhhhcccCHHHh
Confidence 266665555554333
No 52
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.09 E-value=1.7e-05 Score=77.38 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=72.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHH-H------HHHhhhhc-C------CCcceEE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-V------AMELEDSL-F------PLLREVK 161 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g-~------a~DL~d~~-~------~~~~~v~ 161 (405)
+.||+|||+ |.||..++..++..+. ++.+ +|++.++++. . ..++.+.. . ....+++
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g~-----~V~~----~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~ 72 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAGY-----DVVM----VDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARIT 72 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCCC-----ceEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 568999995 9999999999998875 3554 4555555531 1 01111110 0 0112455
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC
Q 015501 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA 241 (405)
Q Consensus 162 i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~ 241 (405)
+++ +++++++||+||++.. .+..+-.++.+.+.++++++++| +||-..+-...+.+.. ..|.
T Consensus 73 ~~~-~~~~~~~aDlVi~av~--------------e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~la~~~-~~~~ 134 (282)
T PRK05808 73 GTT-DLDDLKDADLVIEAAT--------------ENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITELAAAT-KRPD 134 (282)
T ss_pred EeC-CHHHhccCCeeeeccc--------------ccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHHhh-CCCc
Confidence 554 4678999999999842 12455567777788887667766 5555443333333333 2344
Q ss_pred Cceee
Q 015501 242 KNFHA 246 (405)
Q Consensus 242 k~ig~ 246 (405)
|.+++
T Consensus 135 r~ig~ 139 (282)
T PRK05808 135 KVIGM 139 (282)
T ss_pred ceEEe
Confidence 55554
No 53
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.07 E-value=1e-05 Score=72.22 Aligned_cols=113 Identities=20% Similarity=0.181 Sum_probs=68.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc-C---CCcceEEEecCcccccCCC
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-F---PLLREVKIGINPYELFEDA 173 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~-~---~~~~~v~i~~~~~eal~dA 173 (405)
||+|+|| |+.|.++|..|...+. ++.| ..++++.++..-..-.... . .+..++.++++..+++++|
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~-----~V~l----~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGH-----EVTL----WGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTE-----EEEE----ETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-----EEEE----EeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcc
Confidence 8999995 9999999999999883 3555 3444444443222111101 0 1123678888888999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC-----chhHHHHHHHHHC
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN-----PCNTNALICLKNA 236 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN-----P~d~~t~~~~k~s 236 (405)
|+||++ .| ...++++.+.+..+..++..+++++- ....+..++.+..
T Consensus 71 d~Iiia--vP--------------s~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~ 122 (157)
T PF01210_consen 71 DIIIIA--VP--------------SQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEIL 122 (157)
T ss_dssp SEEEE---S---------------GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHH
T ss_pred cEEEec--cc--------------HHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHh
Confidence 999987 32 24567778888887644556665541 2234555555544
No 54
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.02 E-value=4.2e-05 Score=75.02 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=61.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhh--------cCC------CcceE
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS--------LFP------LLREV 160 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~--------~~~------~~~~v 160 (405)
+.+||+|||+ |.+|..++..|+..|. ++.+ +|++++.++.....+... ..+ ...++
T Consensus 3 ~~~kI~vIGa-G~mG~~iA~~la~~G~-----~V~l----~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 72 (292)
T PRK07530 3 AIKKVGVIGA-GQMGNGIAHVCALAGY-----DVLL----NDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARI 72 (292)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 3579999995 9999999999998774 3555 456656555322222111 000 01235
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEE
Q 015501 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219 (405)
Q Consensus 161 ~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vI 219 (405)
+++. +++++++||+||.+. |. +.++...+.+.+.++++++++++
T Consensus 73 ~~~~-~~~~~~~aD~Vieav--pe------------~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 73 STAT-DLEDLADCDLVIEAA--TE------------DETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred EeeC-CHHHhcCCCEEEEcC--cC------------CHHHHHHHHHHHHhhCCCCcEEE
Confidence 5544 467899999999873 21 12344455556777775677664
No 55
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.02 E-value=5e-05 Score=75.04 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=62.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc---C------CCcceEEEec
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL---F------PLLREVKIGI 164 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~---~------~~~~~v~i~~ 164 (405)
.+++||+|||+ |.+|..++..|+..+. ++.+ +|++.+.++.....+.... . ....+++.++
T Consensus 2 ~~~~~I~vIGa-G~mG~~iA~~l~~~g~-----~V~~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 71 (311)
T PRK06130 2 NPIQNLAIIGA-GTMGSGIAALFARKGL-----QVVL----IDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEA 71 (311)
T ss_pred CCccEEEEECC-CHHHHHHHHHHHhCCC-----eEEE----EECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeC
Confidence 45679999995 9999999999998764 3544 4555555543332221110 0 0112345555
Q ss_pred CcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 165 ~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+..+++++||+||++... ...+..++...+..+++++++|+..++
T Consensus 72 ~~~~~~~~aDlVi~av~~--------------~~~~~~~v~~~l~~~~~~~~ii~s~ts 116 (311)
T PRK06130 72 GLAAAVSGADLVIEAVPE--------------KLELKRDVFARLDGLCDPDTIFATNTS 116 (311)
T ss_pred CHHHHhccCCEEEEeccC--------------cHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 555679999999987321 123444555556666645555543333
No 56
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.00 E-value=5.8e-05 Score=74.02 Aligned_cols=103 Identities=14% Similarity=0.173 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh-------h---c-C------CCcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED-------S---L-F------PLLR 158 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d-------~---~-~------~~~~ 158 (405)
..||+|||| |.+|..++..|+..|. +|.+ +|++++.++.....+.+ . . . ....
T Consensus 3 i~~I~ViGa-G~mG~~iA~~la~~G~-----~V~l----~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~ 72 (291)
T PRK06035 3 IKVIGVVGS-GVMGQGIAQVFARTGY-----DVTI----VDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMA 72 (291)
T ss_pred CcEEEEECc-cHHHHHHHHHHHhcCC-----eEEE----EeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHh
Confidence 469999995 9999999999998875 3554 45565555422111111 0 0 0 0012
Q ss_pred eEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 159 ~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++..++ +++++++||+||.+... +.++.+++.+.+.++++++++++..|.
T Consensus 73 ~i~~~~-~~~~~~~aDlVieav~e--------------~~~~k~~~~~~l~~~~~~~~il~S~ts 122 (291)
T PRK06035 73 RIRTST-SYESLSDADFIVEAVPE--------------KLDLKRKVFAELERNVSPETIIASNTS 122 (291)
T ss_pred CcEeeC-CHHHhCCCCEEEEcCcC--------------cHHHHHHHHHHHHhhCCCCeEEEEcCC
Confidence 344444 44789999999987421 245566677778888766776654443
No 57
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.98 E-value=2e-05 Score=63.90 Aligned_cols=95 Identities=22% Similarity=0.250 Sum_probs=63.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-CcccccCCCcEE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEWA 176 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~~eal~dADiV 176 (405)
||+||| +|++|++++..|+..+. .. .++.+. .++++++++..+.++. +.+.. +..+++++||+|
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~-~~-~~v~~~---~~r~~~~~~~~~~~~~---------~~~~~~~~~~~~~~advv 65 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGI-KP-HEVIIV---SSRSPEKAAELAKEYG---------VQATADDNEEAAQEADVV 65 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS--G-GEEEEE---EESSHHHHHHHHHHCT---------TEEESEEHHHHHHHTSEE
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCC-Cc-eeEEee---ccCcHHHHHHHHHhhc---------cccccCChHHhhccCCEE
Confidence 899999 59999999999999886 22 234431 3777777765554432 12233 578899999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
|++... +.+.++++.+... .++..+|-++||
T Consensus 66 ilav~p----------------~~~~~v~~~i~~~-~~~~~vis~~ag 96 (96)
T PF03807_consen 66 ILAVKP----------------QQLPEVLSEIPHL-LKGKLVISIAAG 96 (96)
T ss_dssp EE-S-G----------------GGHHHHHHHHHHH-HTTSEEEEESTT
T ss_pred EEEECH----------------HHHHHHHHHHhhc-cCCCEEEEeCCC
Confidence 997421 3455566666333 367888888876
No 58
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=97.95 E-value=5.2e-05 Score=74.43 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=59.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHH-------HHhhhhc-C------CCcce
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA-------MELEDSL-F------PLLRE 159 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a-------~DL~d~~-~------~~~~~ 159 (405)
.++.||+|||+ |.+|..+|..|+..|. ++.+ +|++.+.++... .++.+.. . .....
T Consensus 2 ~~~~~V~vIG~-G~mG~~iA~~l~~~G~-----~V~~----~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 71 (295)
T PLN02545 2 AEIKKVGVVGA-GQMGSGIAQLAAAAGM-----DVWL----LDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGR 71 (295)
T ss_pred CCcCEEEEECC-CHHHHHHHHHHHhcCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 45679999995 9999999999998774 3554 455555543211 1111110 0 00012
Q ss_pred EEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEE
Q 015501 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219 (405)
Q Consensus 160 v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vI 219 (405)
.+.+ ++++++++||+||.+.. . +.++...+...+.++++++++|+
T Consensus 72 ~~~~-~~~~~~~~aD~Vieav~--e------------~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 72 IRCT-TNLEELRDADFIIEAIV--E------------SEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred eEee-CCHHHhCCCCEEEEcCc--c------------CHHHHHHHHHHHHhhCCCCcEEE
Confidence 3333 45688999999998732 1 23445555555666665676553
No 59
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.93 E-value=5.4e-05 Score=83.21 Aligned_cols=124 Identities=15% Similarity=0.208 Sum_probs=78.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHH---HHHHhhhh-c----C------CCcceE
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAMELEDS-L----F------PLLREV 160 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g---~a~DL~d~-~----~------~~~~~v 160 (405)
+..||+|||| |.+|..+|..++..|+ ++.| +|.+.+.++. .+.++.+. . . ....++
T Consensus 312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~-----~V~l----~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 381 (714)
T TIGR02437 312 DVKQAAVLGA-GIMGGGIAYQSASKGT-----PIVM----KDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGI 381 (714)
T ss_pred ccceEEEECC-chHHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCe
Confidence 4579999995 9999999999999876 4665 4555444431 11111111 0 0 012356
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCC
Q 015501 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP 240 (405)
Q Consensus 161 ~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~ 240 (405)
+.++ +++++++||+||-+. .++.++-+++-..+.++|+|++++ .||-..+-...+.... ..|
T Consensus 382 ~~~~-~~~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asnTS~l~i~~ia~~~-~~p 443 (714)
T TIGR02437 382 TPTL-SYAGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAIL--ASNTSTISISLLAKAL-KRP 443 (714)
T ss_pred EEeC-CHHHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHhhc-CCc
Confidence 6654 568899999999873 235788888999999999788776 8887653332232333 244
Q ss_pred CCceee
Q 015501 241 AKNFHA 246 (405)
Q Consensus 241 ~k~ig~ 246 (405)
.|++|+
T Consensus 444 ~r~ig~ 449 (714)
T TIGR02437 444 ENFCGM 449 (714)
T ss_pred ccEEEE
Confidence 455554
No 60
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.91 E-value=6.7e-05 Score=82.58 Aligned_cols=123 Identities=17% Similarity=0.218 Sum_probs=78.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHH---HHH-hhhhc----C------CCcceEE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV---AME-LEDSL----F------PLLREVK 161 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~---a~D-L~d~~----~------~~~~~v~ 161 (405)
..||+|||| |.+|..+|..++..|+ ++.| +|.+++.++.- +.+ +.... . ....+++
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a~~G~-----~V~l----~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 382 (715)
T PRK11730 313 VKQAAVLGA-GIMGGGIAYQSASKGV-----PVIM----KDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIR 382 (715)
T ss_pred cceEEEECC-chhHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE
Confidence 478999995 9999999999999876 4665 45555544321 111 11100 0 0113566
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC
Q 015501 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA 241 (405)
Q Consensus 162 i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~ 241 (405)
.++ +++++++||+||-+. .++.++-+++-..+.++|+|++++ .||-..+-...+.+.. ..|.
T Consensus 383 ~~~-~~~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la~~~-~~p~ 444 (715)
T PRK11730 383 PTL-DYAGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDTIL--ASNTSTISISLLAKAL-KRPE 444 (715)
T ss_pred EeC-CHHHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHHhhc-CCCc
Confidence 654 568999999999763 235788888999999999777766 8887653322232333 3455
Q ss_pred Cceee
Q 015501 242 KNFHA 246 (405)
Q Consensus 242 k~ig~ 246 (405)
|++|+
T Consensus 445 r~~g~ 449 (715)
T PRK11730 445 NFCGM 449 (715)
T ss_pred cEEEE
Confidence 66653
No 61
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.91 E-value=6.4e-05 Score=82.52 Aligned_cols=124 Identities=12% Similarity=0.143 Sum_probs=76.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cccCCCCCceEEEeccccchhhhHHHHHHH----hhhhc----C------CCcce
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAME----LEDSL----F------PLLRE 159 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~-~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D----L~d~~----~------~~~~~ 159 (405)
+..||+|||| |.+|+.+|..++. .|+ ++.| +|.+++.++.-... |.... . ....+
T Consensus 303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~-----~V~l----~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 372 (699)
T TIGR02440 303 KIKKVGILGG-GLMGGGIASVTATKAGI-----PVRI----KDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMAL 372 (699)
T ss_pred cccEEEEECC-cHHHHHHHHHHHHHcCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcC
Confidence 3479999995 9999999999884 565 3555 34444443321111 11110 0 01235
Q ss_pred EEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCC
Q 015501 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSI 239 (405)
Q Consensus 160 v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~ 239 (405)
++.++ ++++++|||+||-+. .++.++-+++-..+.++|+|++++ .||-...-...+.... ..
T Consensus 373 i~~~~-~~~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~i~~la~~~-~~ 434 (699)
T TIGR02440 373 ITGTT-DYRGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSSLPIGQIAAAA-SR 434 (699)
T ss_pred eEEeC-ChHHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCCCCHHHHHHhc-CC
Confidence 66654 568999999999873 235788888999999999777766 7886653332232333 34
Q ss_pred CCCceee
Q 015501 240 PAKNFHA 246 (405)
Q Consensus 240 ~~k~ig~ 246 (405)
|.|++|+
T Consensus 435 p~r~~g~ 441 (699)
T TIGR02440 435 PENVIGL 441 (699)
T ss_pred cccEEEE
Confidence 4555553
No 62
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.89 E-value=0.00011 Score=72.03 Aligned_cols=98 Identities=14% Similarity=0.210 Sum_probs=60.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh----hc----C------CCcceEEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----SL----F------PLLREVKI 162 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d----~~----~------~~~~~v~i 162 (405)
.||+|||+ |.+|..+|..|+..+. ++.+ +|++++.++.....+.. .. . ....+++.
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~-----~V~~----~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 71 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF-----QTTL----VDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY 71 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC-----cEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 58999995 9999999999998764 3554 45555555433211111 00 0 01123566
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEE
Q 015501 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218 (405)
Q Consensus 163 ~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~v 218 (405)
+.+..+++++||+||.+.. . +..+...+...+.+++.+++++
T Consensus 72 ~~~~~~~~~~aD~Vi~avp--e------------~~~~k~~~~~~l~~~~~~~~il 113 (288)
T PRK09260 72 SLDLKAAVADADLVIEAVP--E------------KLELKKAVFETADAHAPAECYI 113 (288)
T ss_pred eCcHHHhhcCCCEEEEecc--C------------CHHHHHHHHHHHHhhCCCCcEE
Confidence 6666689999999998732 1 1334444555567776566655
No 63
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.89 E-value=6.2e-05 Score=83.03 Aligned_cols=123 Identities=15% Similarity=0.124 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHH---HHHhhhhc-----C------CCcceE
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV---AMELEDSL-----F------PLLREV 160 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~---a~DL~d~~-----~------~~~~~v 160 (405)
+..||+|||| |.+|..+|..++..|+ ++.| +|.+++.++.- ..+..+.. . ....++
T Consensus 334 ~i~~v~ViGa-G~MG~gIA~~~a~~G~-----~V~l----~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 403 (737)
T TIGR02441 334 PVKTLAVLGA-GLMGAGIAQVSVDKGL-----KTVL----KDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNL 403 (737)
T ss_pred cccEEEEECC-CHhHHHHHHHHHhCCC-----cEEE----ecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 3478999995 9999999999999876 4665 45555544421 11111110 0 011356
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCC
Q 015501 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP 240 (405)
Q Consensus 161 ~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~ 240 (405)
+.++ +++++++||+||-+. .+|.++-+++-..+.++|+|++++ .||...+-...+.... ..|
T Consensus 404 ~~~~-~~~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la~~~-~~p 465 (737)
T TIGR02441 404 TPTL-DYSGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCII--ASNTSALPIKDIAAVS-SRP 465 (737)
T ss_pred EEeC-CHHHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHHhhc-CCc
Confidence 6554 578999999999762 346788889999999999778776 7886653332232333 234
Q ss_pred CCcee
Q 015501 241 AKNFH 245 (405)
Q Consensus 241 ~k~ig 245 (405)
.|++|
T Consensus 466 ~r~ig 470 (737)
T TIGR02441 466 EKVIG 470 (737)
T ss_pred cceEE
Confidence 45555
No 64
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.88 E-value=7.8e-05 Score=81.98 Aligned_cols=123 Identities=11% Similarity=0.114 Sum_probs=77.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHH-hcccCCCCCceEEEeccccchhhhHHH---HHHHhhhhc------C-----CCcceE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQALEG---VAMELEDSL------F-----PLLREV 160 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~-~~~~~~~d~~i~L~l~~~d~~~~~l~g---~a~DL~d~~------~-----~~~~~v 160 (405)
..||+|||| |.+|..+|..++ ..|+ ++.| +|.+.+.++. .+.+..+.. . ....++
T Consensus 309 i~~v~ViGa-G~mG~giA~~~a~~~G~-----~V~l----~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 378 (708)
T PRK11154 309 VNKVGVLGG-GLMGGGIAYVTATKAGL-----PVRI----KDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALI 378 (708)
T ss_pred ccEEEEECC-chhhHHHHHHHHHHcCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcE
Confidence 579999995 999999999998 6565 4655 3444443332 111111110 0 112356
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCC
Q 015501 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP 240 (405)
Q Consensus 161 ~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~ 240 (405)
+.++ ++++++|||+||-+. .+|.++-+++-..+.++++|++++ .||-..+-...+.... ..|
T Consensus 379 ~~~~-~~~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l~i~~la~~~-~~p 440 (708)
T PRK11154 379 SGTT-DYRGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSLPIGQIAAAA-ARP 440 (708)
T ss_pred EEeC-ChHHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHHhc-Ccc
Confidence 6665 468999999999763 346788899999999999888877 7886653333232333 234
Q ss_pred CCceee
Q 015501 241 AKNFHA 246 (405)
Q Consensus 241 ~k~ig~ 246 (405)
.|++|+
T Consensus 441 ~r~ig~ 446 (708)
T PRK11154 441 EQVIGL 446 (708)
T ss_pred cceEEE
Confidence 455554
No 65
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=97.87 E-value=7.9e-05 Score=78.86 Aligned_cols=101 Identities=14% Similarity=0.070 Sum_probs=63.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHH---HHHhhhhcC--C---------Ccc
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV---AMELEDSLF--P---------LLR 158 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~---a~DL~d~~~--~---------~~~ 158 (405)
..+..||+|||| |.+|..+|..++..|+ ++.+ .|++.+.++.. +.++.+... . ...
T Consensus 4 ~~~i~~V~VIGa-G~MG~gIA~~la~aG~-----~V~l----~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~ 73 (507)
T PRK08268 4 LPSIATVAVIGA-GAMGAGIAQVAAQAGH-----TVLL----YDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALA 73 (507)
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh
Confidence 345689999995 9999999999998875 3555 45665655432 111111100 0 112
Q ss_pred eEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEE
Q 015501 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218 (405)
Q Consensus 159 ~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~v 218 (405)
+++.++ +++++++||+||.+.. ++.++-+.+-..+.+++++++++
T Consensus 74 ~i~~~~-~~~~~~~aDlViEav~--------------E~~~vK~~vf~~l~~~~~~~ail 118 (507)
T PRK08268 74 RLRPVE-ALADLADCDLVVEAIV--------------ERLDVKQALFAQLEAIVSPDCIL 118 (507)
T ss_pred CeEEeC-CHHHhCCCCEEEEcCc--------------ccHHHHHHHHHHHHhhCCCCcEE
Confidence 356554 5678999999998732 23455555556688887667666
No 66
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.81 E-value=0.0005 Score=69.62 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=71.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHH--------HhhhhcC--CCcceEEEecCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM--------ELEDSLF--PLLREVKIGINP 166 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~--------DL~d~~~--~~~~~v~i~~~~ 166 (405)
|||+||| +|.||...+-.|++.|. ++.. +|+++++.+..-. .|++... ...++.+.|++.
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GH-----eVv~----vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~ 70 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGH-----EVVC----VDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDY 70 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCC-----eEEE----EeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCH
Confidence 7999999 69999999999998764 3433 3444455442210 1111110 111348888888
Q ss_pred ccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCC-eEEEE-eCCchhHHH
Q 015501 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN-VKVIV-VGNPCNTNA 229 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~-a~vIv-vtNP~d~~t 229 (405)
.++++++|+++++.|-|.++..+ .+...+...++.|.++- +. .+|++ -|=|+.+..
T Consensus 71 ~~a~~~adv~fIavgTP~~~dg~------aDl~~V~ava~~i~~~~-~~~~vvV~KSTVPvGt~~ 128 (414)
T COG1004 71 EEAVKDADVVFIAVGTPPDEDGS------ADLSYVEAVAKDIGEIL-DGKAVVVIKSTVPVGTTE 128 (414)
T ss_pred HHHHhcCCEEEEEcCCCCCCCCC------ccHHHHHHHHHHHHhhc-CCCeEEEEcCCCCCCchH
Confidence 88999999999998877665221 22466666666666664 43 33332 233654433
No 67
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.77 E-value=0.00012 Score=67.50 Aligned_cols=120 Identities=17% Similarity=0.187 Sum_probs=66.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC--------------cceEEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--------------LREVKI 162 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~--------------~~~v~i 162 (405)
|||+||| .|.||..+|..|+..|. .+.- +|.+.++.+... +...++ ..+.+.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~-----~V~g----~D~~~~~v~~l~----~g~~p~~E~~l~~ll~~~~~~~~l~~ 66 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGH-----QVIG----VDIDEEKVEALN----NGELPIYEPGLDELLKENVSAGRLRA 66 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS-----EEEE----E-S-HHHHHHHH----TTSSSS-CTTHHHHHHHHHHTTSEEE
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCC-----EEEE----EeCChHHHHHHh----hccccccccchhhhhccccccccchh
Confidence 7999999 69999999999999885 2322 466656554332 221110 136788
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC-chhHHH----HHHHHHC
Q 015501 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN-PCNTNA----LICLKNA 236 (405)
Q Consensus 163 ~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN-P~d~~t----~~~~k~s 236 (405)
+++..+++++||++|++.+.|..++.+ . +..-+.+.++.|.++..++..|++=|. |..+.- .++.+..
T Consensus 67 t~~~~~ai~~adv~~I~VpTP~~~~~~-~-----Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 67 TTDIEEAIKDADVVFICVPTPSDEDGS-P-----DLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp ESEHHHHHHH-SEEEE----EBETTTS-B-----ETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred hhhhhhhhhccceEEEecCCCccccCC-c-----cHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 877788899999999997766544221 1 124445555555555545556555553 654443 4455544
No 68
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=97.76 E-value=0.00015 Score=76.70 Aligned_cols=106 Identities=16% Similarity=0.127 Sum_probs=66.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH----hhhhcC-C---------Ccce
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME----LEDSLF-P---------LLRE 159 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D----L~d~~~-~---------~~~~ 159 (405)
.+..||+|||+ |.+|+.+|..++..|+ ++.+ +|++++.++..... +..... . ...+
T Consensus 3 ~~~~kV~VIGa-G~MG~gIA~~la~aG~-----~V~l----~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~ 72 (503)
T TIGR02279 3 INVVTVAVIGA-GAMGAGIAQVAASAGH-----QVLL----YDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKR 72 (503)
T ss_pred CCccEEEEECc-CHHHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhc
Confidence 34679999995 9999999999998875 3555 46666665432111 111100 0 1124
Q ss_pred EEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 160 v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
++.++ +++++++||+||.+.. ++.++-+.+-..+.+++++++++ .||-..
T Consensus 73 i~~~~-~~~~l~~aDlVIEav~--------------E~~~vK~~vf~~l~~~~~~~~Il--asnTSt 122 (503)
T TIGR02279 73 LIPVT-DLHALADAGLVIEAIV--------------ENLEVKKALFAQLEELCPADTII--ASNTSS 122 (503)
T ss_pred cEEeC-CHHHhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EECCCC
Confidence 55554 4678999999998732 23455555566688888566654 666543
No 69
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.71 E-value=0.00025 Score=74.86 Aligned_cols=105 Identities=13% Similarity=0.145 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh----------hhcCCCcceEEEecC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE----------DSLFPLLREVKIGIN 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~----------d~~~~~~~~v~i~~~ 165 (405)
.+||+|||+ |.+|+.+|..|+..|. ++.+ .|+++++++.....+. ........++++..+
T Consensus 4 i~kIavIG~-G~MG~~iA~~la~~G~-----~V~v----~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~ 73 (495)
T PRK07531 4 IMKAACIGG-GVIGGGWAARFLLAGI-----DVAV----FDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCAS 73 (495)
T ss_pred cCEEEEECc-CHHHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCC
Confidence 468999994 9999999999998875 3554 4556555543221110 000001123566666
Q ss_pred cccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
..+++++||+|+.+.. . +.++.+.+...+.++++++++ +.+|-..
T Consensus 74 ~~ea~~~aD~Vieavp--e------------~~~vk~~l~~~l~~~~~~~~i--I~SsTsg 118 (495)
T PRK07531 74 LAEAVAGADWIQESVP--E------------RLDLKRRVLAEIDAAARPDAL--IGSSTSG 118 (495)
T ss_pred HHHHhcCCCEEEEcCc--C------------CHHHHHHHHHHHHhhCCCCcE--EEEcCCC
Confidence 6688999999998632 1 234444455556677645543 4555544
No 70
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.71 E-value=0.00038 Score=69.97 Aligned_cols=117 Identities=14% Similarity=-0.003 Sum_probs=73.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc-----CCCcceEEEecCcc
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-----FPLLREVKIGINPY 167 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~-----~~~~~~v~i~~~~~ 167 (405)
.++++||+|||| |.+|..++..|...+. +.+. .++++..+....+-.... ..+..++..+++..
T Consensus 4 ~~~~mkI~IiGa-Ga~G~alA~~La~~g~------v~l~----~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~ 72 (341)
T PRK12439 4 AKREPKVVVLGG-GSWGTTVASICARRGP------TLQW----VRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFA 72 (341)
T ss_pred ccCCCeEEEECC-CHHHHHHHHHHHHCCC------EEEE----eCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHH
Confidence 366899999995 9999999999998752 3332 233343332222110000 01112456666767
Q ss_pred cccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH-----HHHHHHHHC
Q 015501 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-----NALICLKNA 236 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~-----~t~~~~k~s 236 (405)
++++++|+||++.. ...++++.+.+..+.+++..+|.++|-.+. +..++.+..
T Consensus 73 ~a~~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l 130 (341)
T PRK12439 73 EAANCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVL 130 (341)
T ss_pred HHHhcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHc
Confidence 88999999998732 245666666666665567788899997653 445555543
No 71
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.68 E-value=0.00029 Score=69.65 Aligned_cols=105 Identities=21% Similarity=0.240 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc----CCCcceEEEecCcccccC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYELFE 171 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~----~~~~~~v~i~~~~~eal~ 171 (405)
||||+|||+ |.+|+.++..|+..+. ++.+ ++++++.++....+-.+.. ......+....+..+.++
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH-----DVTL----WARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 579999995 9999999999998764 3544 4555555554433211100 001113445555556888
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
++|+||++... ..+.++.+.+..+..++.++|..+|-.+
T Consensus 71 ~~D~vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 71 DADLILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred CCCEEEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 99999987331 2234444455555446778888877543
No 72
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.63 E-value=0.00016 Score=64.92 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=57.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||+||| .|.+|+.++..|+..+. ++.. +|++.++++....+ ..+...+..|.+++||+
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~-----~v~~----~d~~~~~~~~~~~~----------g~~~~~s~~e~~~~~dv 60 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGY-----EVTV----YDRSPEKAEALAEA----------GAEVADSPAEAAEQADV 60 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT-----EEEE----EESSHHHHHHHHHT----------TEEEESSHHHHHHHBSE
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCC-----eEEe----eccchhhhhhhHHh----------hhhhhhhhhhHhhcccc
Confidence 78999999 69999999999998775 3444 56766666544321 14555677889999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHH--HHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKA--LNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~--i~~~a~p~a~vIvvtN 223 (405)
||++-. +.+.++++... +.....++.++|..++
T Consensus 61 vi~~v~---------------~~~~v~~v~~~~~i~~~l~~g~iiid~sT 95 (163)
T PF03446_consen 61 VILCVP---------------DDDAVEAVLFGENILAGLRPGKIIIDMST 95 (163)
T ss_dssp EEE-SS---------------SHHHHHHHHHCTTHGGGS-TTEEEEE-SS
T ss_pred eEeecc---------------cchhhhhhhhhhHHhhccccceEEEecCC
Confidence 998632 23445555554 4444334555555543
No 73
>PRK07680 late competence protein ComER; Validated
Probab=97.61 E-value=0.0005 Score=66.76 Aligned_cols=100 Identities=11% Similarity=0.188 Sum_probs=64.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+|||+ |.+|..++..|...+.+.. ..+.+ ++++.++++....++ + .+.+..+..+.+.++|+|
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~-~~v~v----~~r~~~~~~~~~~~~-----~---g~~~~~~~~~~~~~aDiV 66 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKP-SQLTI----TNRTPAKAYHIKERY-----P---GIHVAKTIEEVISQSDLI 66 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCc-ceEEE----ECCCHHHHHHHHHHc-----C---CeEEECCHHHHHHhCCEE
Confidence 48999995 9999999999998875322 23444 566656554332211 1 234555666778999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
|++.. -..+.++.+.+..+..++.+||.++|.+.
T Consensus 67 ilav~----------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 67 FICVK----------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred EEecC----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 98742 12344455555544335678889999764
No 74
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.52 E-value=0.00077 Score=66.72 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=47.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHH-------HhhhhcC-------CCcceEE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-------ELEDSLF-------PLLREVK 161 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~-------DL~d~~~-------~~~~~v~ 161 (405)
++||+||| +|.+|+.++..|+..|. +|.+ +|++.+.++.... .+.+... ....+++
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~~G~-----~V~v----~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~ 71 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFARAGH-----EVRL----WDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIR 71 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHHCCC-----eeEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeE
Confidence 46899999 59999999999999875 3554 4555444432111 1111100 0112356
Q ss_pred EecCcccccCCCcEEEEeC
Q 015501 162 IGINPYELFEDAEWALLIG 180 (405)
Q Consensus 162 i~~~~~eal~dADiVIi~~ 180 (405)
++.+..+++++||+|+.+.
T Consensus 72 ~~~~~~~a~~~ad~Vi~av 90 (308)
T PRK06129 72 VTDSLADAVADADYVQESA 90 (308)
T ss_pred EECcHHHhhCCCCEEEECC
Confidence 6666667899999999873
No 75
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.48 E-value=0.001 Score=66.18 Aligned_cols=112 Identities=21% Similarity=0.213 Sum_probs=77.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhh--cCC------CcceEEEecCcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS--LFP------LLREVKIGINPY 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~--~~~------~~~~v~i~~~~~ 167 (405)
++||+|+|| |.-|.++|..|+..+. ++.|.- ++++. +.|+.+. ... +..++..++|..
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~-----~V~lw~----r~~~~----~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~ 66 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGH-----EVRLWG----RDEEI----VAEINETRENPKYLPGILLPPNLKATTDLA 66 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCC-----eeEEEe----cCHHH----HHHHHhcCcCccccCCccCCcccccccCHH
Confidence 579999995 9999999999999873 466643 33232 2333322 111 224677788999
Q ss_pred cccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC-----chhHHHHHHHHHCC
Q 015501 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN-----PCNTNALICLKNAP 237 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN-----P~d~~t~~~~k~s~ 237 (405)
+++++||+||+. .| .+.++++++.++.+-.++.+++..+- ....+..++.+..|
T Consensus 67 ~a~~~ad~iv~a--vP--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~ 125 (329)
T COG0240 67 EALDGADIIVIA--VP--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELP 125 (329)
T ss_pred HHHhcCCEEEEE--CC--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcC
Confidence 999999999987 33 46777788777655556788888773 45677777777654
No 76
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.43 E-value=0.00093 Score=66.48 Aligned_cols=104 Identities=14% Similarity=0.249 Sum_probs=64.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc----CCCcceEEEecCccccc-C
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYELF-E 171 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~----~~~~~~v~i~~~~~eal-~ 171 (405)
|||+|||| |.+|+.++..|...+. +|.| ++++.+.++....+-.+.. ..+..++.++.+..+++ .
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~-----~V~l----~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 70 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI-----SVNL----WGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD 70 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC-----eEEE----EecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC
Confidence 58999995 9999999999998763 3555 4555554443332211111 01113466666666666 5
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHh-hcCCCeEEEEeCCchh
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA-VASRNVKVIVVGNPCN 226 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~-~a~p~a~vIvvtNP~d 226 (405)
++|+||++.. ..-+.++.+.+.. +.+++..|+..+|=.+
T Consensus 71 ~~Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 71 NATCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred CCCEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 8999998732 2445555555654 4346777888888763
No 77
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases. It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.
Probab=97.42 E-value=0.00033 Score=66.63 Aligned_cols=71 Identities=23% Similarity=0.308 Sum_probs=51.5
Q ss_pred hcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 325 KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 325 ~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.+|...++ ..++++|. +|++.++.++|.++|..-++|+|.++++||+|+++|+.++.. .+|.+.....++.
T Consensus 132 ~~~~~~~a---~~~i~~i~-----~~~~~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~~-g~lP~~~~~li~~ 202 (232)
T PF11975_consen 132 KRGSGEYA---EAAIEAIY-----NDKPKRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVAV-GPLPPAIAGLIQQ 202 (232)
T ss_dssp SSTTSCHH---HHHHHHHH-----HSSEEEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB-S-B---HHHHHHHHH
T ss_pred cccccchH---HHHHHHHh-----cCCCeEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEeccC-CCCCHHHHHHHHH
Confidence 34444444 45555554 688999999999999989999999999999999999999764 7899988876653
No 78
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.42 E-value=0.00093 Score=71.29 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=67.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc---CC--CcceEEEe---cC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL---FP--LLREVKIG---IN 165 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~---~~--~~~~v~i~---~~ 165 (405)
++.+.|.|+||+|.+|.+++..|+..|. .|.+ .+++.+++.....++.+.. .. ...++.+. ..
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-----~Vva----l~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF-----RVRA----GVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 3456899999999999999999998764 2443 3455555554443332210 00 00112111 11
Q ss_pred ----cccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 166 ----PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 166 ----~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
..+++.++|+||.++|.......+-...+..|......+.+.+.+. .-+.||+++
T Consensus 149 D~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~a--gVgRIV~VS 207 (576)
T PLN03209 149 KPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVA--KVNHFILVT 207 (576)
T ss_pred CHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHh--CCCEEEEEc
Confidence 2346789999998876543221121223455666777777777764 234566665
No 79
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.38 E-value=0.0014 Score=63.93 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=46.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
+||+||| +|++|.+++..|+..+.+.. ..|.. +|++.++++....++ . +.+..+..+.+++||+|
T Consensus 3 ~~IgfIG-~G~MG~aia~~L~~~g~~~~-~~I~v----~~r~~~~~~~l~~~~-----g----~~~~~~~~e~~~~aDiI 67 (272)
T PRK12491 3 KQIGFIG-CGNMGIAMIGGMINKNIVSP-DQIIC----SDLNVSNLKNASDKY-----G----ITITTNNNEVANSADIL 67 (272)
T ss_pred CeEEEEC-ccHHHHHHHHHHHHCCCCCC-ceEEE----ECCCHHHHHHHHHhc-----C----cEEeCCcHHHHhhCCEE
Confidence 5899999 59999999999998876432 13443 566666654332211 1 23445666778999999
Q ss_pred EEeC
Q 015501 177 LLIG 180 (405)
Q Consensus 177 Ii~~ 180 (405)
|++.
T Consensus 68 iLav 71 (272)
T PRK12491 68 ILSI 71 (272)
T ss_pred EEEe
Confidence 9873
No 80
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.36 E-value=0.00054 Score=59.30 Aligned_cols=104 Identities=20% Similarity=0.188 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
..+||+|||| |.||.+|+..|...+. +|.- + ..++.+..+..+..+. ...+ .+..+.+.+||
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~~ag~-----~v~~-v--~srs~~sa~~a~~~~~--------~~~~-~~~~~~~~~aD 70 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALARAGH-----EVVG-V--YSRSPASAERAAAFIG--------AGAI-LDLEEILRDAD 70 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHHHTTS-----EEEE-E--SSCHH-HHHHHHC--T--------T------TTGGGCC-S
T ss_pred CccEEEEECC-CHHHHHHHHHHHHCCC-----eEEE-E--EeCCcccccccccccc--------cccc-cccccccccCC
Confidence 3589999995 9999999999998775 2322 2 3455444332222111 1222 34678899999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhc-CCCeEEEEeC---CchhHHHHHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA-SRNVKVIVVG---NPCNTNALIC 232 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a-~p~a~vIvvt---NP~d~~t~~~ 232 (405)
++|++..+ ..+.++++.|..+. ...+.+++-+ -+.+++..+-
T Consensus 71 lv~iavpD----------------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~ 116 (127)
T PF10727_consen 71 LVFIAVPD----------------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPAR 116 (127)
T ss_dssp EEEE-S-C----------------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHH
T ss_pred EEEEEech----------------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHH
Confidence 99998432 35677777777751 0234555554 3556665543
No 81
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=97.35 E-value=0.0051 Score=63.09 Aligned_cols=115 Identities=10% Similarity=0.130 Sum_probs=62.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC--------CcceEEEecCccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--------LLREVKIGINPYE 168 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~--------~~~~v~i~~~~~e 168 (405)
|||+||| +|.||..+|..++. |. ++.. +|+++++++...........+ ....++.+.+..+
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA~-G~-----~Vig----vD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~ 69 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIAQ-NH-----EVVA----LDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE 69 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHHh-CC-----cEEE----EECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh
Confidence 5899999 59999999977775 42 2544 466666655333211100000 1123445555678
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-CchhHH
Q 015501 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTN 228 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP~d~~ 228 (405)
+.++||+||++...|....... -+..-+.+.++.+.+. .++..||+-| =|..+.
T Consensus 70 ~~~~ad~vii~Vpt~~~~k~~~-----~dl~~v~~v~~~i~~~-~~g~lVV~~STv~pgtt 124 (388)
T PRK15057 70 AYRDADYVIIATPTDYDPKTNY-----FNTSSVESVIKDVVEI-NPYAVMVIKSTVPVGFT 124 (388)
T ss_pred hhcCCCEEEEeCCCCCccCCCC-----cChHHHHHHHHHHHhc-CCCCEEEEeeecCCchH
Confidence 8899999999855442111111 1223444444545443 3555555444 455443
No 82
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.35 E-value=0.00024 Score=66.71 Aligned_cols=109 Identities=20% Similarity=0.235 Sum_probs=74.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHH----HHHHHhhhhcC------C-------
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE----GVAMELEDSLF------P------- 155 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~----g~a~DL~d~~~------~------- 155 (405)
+.++..|+|||| |.+|+.+|+-.++.|+ .+.| .|.+++.|. ++...+.+.+. +
T Consensus 8 ~~~~~~V~ivGa-G~MGSGIAQv~a~sg~-----~V~l----~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v 77 (298)
T KOG2304|consen 8 MAEIKNVAIVGA-GQMGSGIAQVAATSGL-----NVWL----VDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFV 77 (298)
T ss_pred cccccceEEEcc-cccchhHHHHHHhcCC-----ceEE----ecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHH
Confidence 455789999995 9999999999998876 3555 344444433 22222222110 0
Q ss_pred --CcceEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH
Q 015501 156 --LLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (405)
Q Consensus 156 --~~~~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (405)
.+..+...++...++.|||+||-+ ..+|+.|-+++-+.+.+.|.+++++ .||....
T Consensus 78 ~~~l~ri~~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~il--~tNTSSl 135 (298)
T KOG2304|consen 78 DDTLDRIKTSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSSTIL--ATNTSSL 135 (298)
T ss_pred HHHHHHHHHcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccceEE--eecccce
Confidence 112345567777888889988743 3678999999999999999667766 7887643
No 83
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.33 E-value=0.0015 Score=67.31 Aligned_cols=110 Identities=13% Similarity=0.114 Sum_probs=61.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC---------C-cceEEEecCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP---------L-LREVKIGINP 166 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~---------~-~~~v~i~~~~ 166 (405)
|||+||| .|.||..++..|+..|. ++.. +|++.++.+...........+ . ..+++.+++.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~-----~V~~----~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~ 70 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGH-----EVTG----VDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDY 70 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCC-----eEEE----EECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCH
Confidence 5899999 59999999999998764 2443 456555554332110000000 0 1235566666
Q ss_pred ccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
.+++++||+||++...|..... . -+...+.+..+.+.++..++.+|++.|
T Consensus 71 ~~~~~~advvii~vpt~~~~~~-~-----~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 71 EDAIRDADVIIICVPTPLKEDG-S-----PDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred HHHHhhCCEEEEEeCCCCCCCC-C-----cChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 6789999999998665543211 1 122334444444544433445555444
No 84
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.32 E-value=0.0015 Score=65.84 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=71.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCC---CceEEEeccccc-hhhhHHHHHHHhhhhcC----CCcceEEEecCcccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPD---QPIALKLLGSER-SLQALEGVAMELEDSLF----PLLREVKIGINPYEL 169 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d---~~i~L~l~~~d~-~~~~l~g~a~DL~d~~~----~~~~~v~i~~~~~ea 169 (405)
||+|||| |..|.++|..|...+...++ .+|.|+-.+-++ +.+..+..-.+.+...+ .+..+++++++..++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 7999995 99999999999987733221 356664321111 22222211111111110 122357788887889
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC-------chhHHHHHHHHHC
Q 015501 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN-------PCNTNALICLKNA 236 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN-------P~d~~t~~~~k~s 236 (405)
+++||+||++ .| .+.++++++.+..+-.++..+|.++- ..-.+..++.+..
T Consensus 80 l~~ADiIIlA--VP--------------s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l 137 (342)
T TIGR03376 80 AKGADILVFV--IP--------------HQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL 137 (342)
T ss_pred HhcCCEEEEE--CC--------------hHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh
Confidence 9999999987 33 36677777777766444556666652 2234555555443
No 85
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.30 E-value=0.0022 Score=65.21 Aligned_cols=107 Identities=11% Similarity=0.119 Sum_probs=67.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhccc----CCCCCceEEEeccccchhhhHHHHHHHhhhh--cC------CCcceEE
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV----LGPDQPIALKLLGSERSLQALEGVAMELEDS--LF------PLLREVK 161 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~----~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~--~~------~~~~~v~ 161 (405)
.+.+||+|||| |.-|+++|..|...+. |+. ++.|+..+-+.+.+ ..+.++.+. .. .+..++.
T Consensus 9 ~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~--~V~lw~~~~~~~~~---~~~~~in~~~~N~~ylp~~~Lp~ni~ 82 (365)
T PTZ00345 9 CGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHN--EVRMWVLEEIVEGE---KLSDIINTKHENVKYLPGIKLPDNIV 82 (365)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCC--eEEEEEecccccch---HHHHHHHhcCCCcccCCCCcCCCceE
Confidence 45689999995 9999999999998762 332 46664432211111 123334321 11 1334678
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHh--hcCCCeEEEEeC
Q 015501 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA--VASRNVKVIVVG 222 (405)
Q Consensus 162 i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~--~a~p~a~vIvvt 222 (405)
.+++..+++++||+||++ .| .+.++++++.++. +-.++..+|.++
T Consensus 83 ~tsdl~eav~~aDiIvlA--VP--------------sq~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 83 AVSDLKEAVEDADLLIFV--IP--------------HQFLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred EecCHHHHHhcCCEEEEE--cC--------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence 888888899999999887 33 3667777777776 433344565554
No 86
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.30 E-value=0.0029 Score=65.83 Aligned_cols=93 Identities=15% Similarity=0.173 Sum_probs=57.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||||.|.+|..++..|...+. .+.+ ++++.+.+...+.++ .+....+..+++.+||+|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~-----~V~v----~~r~~~~~~~~a~~~---------gv~~~~~~~e~~~~aDvV 62 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF-----EVIV----TGRDPKKGKEVAKEL---------GVEYANDNIDAAKDADIV 62 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC-----EEEE----EECChHHHHHHHHHc---------CCeeccCHHHHhccCCEE
Confidence 5899998679999999999998764 2443 455545443333321 122334566788999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++... ..+.++.+.+..+..++++|+.++.
T Consensus 63 Ilavp~----------------~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 63 IISVPI----------------NVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred EEecCH----------------HHHHHHHHHHHhhCCCCCEEEEccc
Confidence 987431 2223333444443346667777765
No 87
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.29 E-value=0.0017 Score=64.67 Aligned_cols=76 Identities=26% Similarity=0.306 Sum_probs=49.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc----CCCcceEEEecCcccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYEL 169 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~----~~~~~~v~i~~~~~ea 169 (405)
..+|||+|||+ |.+|..++..|+..+. ++.+ ++++.++++.....-.+.. .....++..+.+..++
T Consensus 2 ~~~m~I~iIG~-G~mG~~ia~~L~~~G~-----~V~~----~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~ 71 (328)
T PRK14618 2 HHGMRVAVLGA-GAWGTALAVLAASKGV-----PVRL----WARRPEFAAALAAERENREYLPGVALPAELYPTADPEEA 71 (328)
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHH
Confidence 34789999995 9999999999998764 3554 4555555544332111100 0111225555666678
Q ss_pred cCCCcEEEEe
Q 015501 170 FEDAEWALLI 179 (405)
Q Consensus 170 l~dADiVIi~ 179 (405)
++++|+||++
T Consensus 72 ~~~aD~Vi~~ 81 (328)
T PRK14618 72 LAGADFAVVA 81 (328)
T ss_pred HcCCCEEEEE
Confidence 8999999987
No 88
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.28 E-value=0.0016 Score=68.47 Aligned_cols=123 Identities=13% Similarity=0.169 Sum_probs=70.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH--------hhhhcCC-CcceEEEecCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--------LEDSLFP-LLREVKIGINP 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D--------L~d~~~~-~~~~v~i~~~~ 166 (405)
||||+||| +|.||..+|..|+..|. + ..+.. +|.++++++..-.. +++.... ..+..+++++.
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~-g--~~V~g----vD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~ 72 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCP-D--IEVVV----VDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDV 72 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCC-C--CeEEE----EECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCH
Confidence 68999999 59999999999998652 1 12332 45555655543211 1111000 11246777777
Q ss_pred ccccCCCcEEEEeCCcCCCCCC-chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe-CCchhHH
Q 015501 167 YELFEDAEWALLIGAKPRGPGM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVV-GNPCNTN 228 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~g~-~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvv-tNP~d~~ 228 (405)
.+++++||++|++.+.|..... .. + -.-+..-+.+.++.|.++.+++.+||+= |-|..+.
T Consensus 73 ~~~i~~advi~I~V~TP~~~~g~~~-~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt 134 (473)
T PLN02353 73 EKHVAEADIVFVSVNTPTKTRGLGA-G-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (473)
T ss_pred HHHHhcCCEEEEEeCCCCCCCCCcC-C-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChH
Confidence 7899999999999877754311 00 0 0112345666666677665333333322 4566543
No 89
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.28 E-value=0.0019 Score=62.18 Aligned_cols=97 Identities=19% Similarity=0.257 Sum_probs=59.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccc-cchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS-ERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~-d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|||+||| .|.+|..++..|+..+.... ..|.+ . +++.++++.. .+. .+.+..+..+.+++||+
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~~-~~i~v----~~~r~~~~~~~~----~~~------g~~~~~~~~e~~~~aDv 64 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVASGVVPP-SRIST----ADDSNPARRDVF----QSL------GVKTAASNTEVVKSSDV 64 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCCc-ceEEE----EeCCCHHHHHHH----HHc------CCEEeCChHHHHhcCCE
Confidence 6899999 59999999999998875332 12333 3 5655554322 111 13344566677889999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
||++.. | +.+.++.+.+..+..++..||..++..
T Consensus 65 Vil~v~-~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 65 IILAVK-P---------------QVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred EEEEEC-c---------------HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 998742 2 234444445544433566666665554
No 90
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.23 E-value=0.0014 Score=63.68 Aligned_cols=97 Identities=25% Similarity=0.317 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||++||+ |++|..++..|+..+.+.. ..|.+ .+++.+++...+.++ +. . .+.+..++..++|+
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~-~~I~v----~~~~~e~~~~l~~~~-----g~--~--~~~~~~~~~~~adv 65 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPP-EEIIV----TNRSEEKRAALAAEY-----GV--V--TTTDNQEAVEEADV 65 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCc-ceEEE----eCCCHHHHHHHHHHc-----CC--c--ccCcHHHHHhhCCE
Confidence 579999995 9999999999999985443 23544 677777665333322 22 1 25566788899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
||++. || +.+.++...++.. .++-.||-+.=.
T Consensus 66 v~Lav----KP------------q~~~~vl~~l~~~-~~~~lvISiaAG 97 (266)
T COG0345 66 VFLAV----KP------------QDLEEVLSKLKPL-TKDKLVISIAAG 97 (266)
T ss_pred EEEEe----Ch------------HhHHHHHHHhhcc-cCCCEEEEEeCC
Confidence 99874 23 4566666666652 245455554433
No 91
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.22 E-value=0.0021 Score=61.93 Aligned_cols=96 Identities=22% Similarity=0.237 Sum_probs=60.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||+|||+ |.+|..++..|...+... ..+.+ ++++.++++....++ .+.+..+..+.+.++|+
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~--~~v~v----~~r~~~~~~~~~~~~---------g~~~~~~~~~~~~~adv 65 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPA--KDIIV----SDPSPEKRAALAEEY---------GVRAATDNQEAAQEADV 65 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCc--ceEEE----EcCCHHHHHHHHHhc---------CCeecCChHHHHhcCCE
Confidence 579999995 999999999999876311 12433 566655554332211 12334455667889999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
||++.. ...+.++.+.+..+. +..|+.++|-.
T Consensus 66 Vil~v~----------------~~~~~~v~~~l~~~~--~~~vvs~~~gi 97 (267)
T PRK11880 66 VVLAVK----------------PQVMEEVLSELKGQL--DKLVVSIAAGV 97 (267)
T ss_pred EEEEcC----------------HHHHHHHHHHHHhhc--CCEEEEecCCC
Confidence 998742 134555665555543 44677777754
No 92
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.20 E-value=0.0036 Score=59.45 Aligned_cols=100 Identities=18% Similarity=0.144 Sum_probs=57.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc-hhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~-~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
+.+||+|||+ |.+|..++..|+..+.... ..+.+ .++ +.++++..+..+ .+..+.+..+.++++
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~-~~i~~----~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 67 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYI-EEIIV----SNRSNVEKLDQLQARY---------NVSTTTDWKQHVTSV 67 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCc-CeEEE----ECCCCHHHHHHHHHHc---------CcEEeCChHHHHhcC
Confidence 4579999995 9999999999987653211 11322 233 344544333211 133445666788999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
|+||++.. -+.++++.+.+..+- ++..||.++.-.+
T Consensus 68 DiViiavp----------------~~~~~~v~~~l~~~~-~~~~vis~~~gi~ 103 (245)
T PRK07634 68 DTIVLAMP----------------PSAHEELLAELSPLL-SNQLVVTVAAGIG 103 (245)
T ss_pred CEEEEecC----------------HHHHHHHHHHHHhhc-cCCEEEEECCCCC
Confidence 99998732 123344455555432 3345666655443
No 93
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.18 E-value=0.0018 Score=63.44 Aligned_cols=106 Identities=14% Similarity=0.056 Sum_probs=59.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC-cc--eEEEecCcccccCCC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LR--EVKIGINPYELFEDA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~-~~--~v~i~~~~~eal~dA 173 (405)
|||+|+|+ |.+|..++..|...+. .+.+ +++ .++++....+=....... .. .....++..+..+++
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~-----~V~~----~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR-----DVTF----LVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPF 69 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC-----ceEE----Eec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCC
Confidence 58999995 9999999999998763 3555 344 344443221000000000 00 111223333455899
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t 229 (405)
|+||++... .-+.++.+.+..+.+++..||.+.|..+...
T Consensus 70 d~vilavk~----------------~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~ 109 (305)
T PRK12921 70 DLVILAVKA----------------YQLDAAIPDLKPLVGEDTVIIPLQNGIGQLE 109 (305)
T ss_pred CEEEEEecc----------------cCHHHHHHHHHhhcCCCCEEEEeeCCCChHH
Confidence 999987431 1123344445554346778888999886544
No 94
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=97.17 E-value=0.0029 Score=62.96 Aligned_cols=123 Identities=12% Similarity=0.034 Sum_probs=76.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc----ceEEEecCccccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL----REVKIGINPYELF 170 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~----~~v~i~~~~~eal 170 (405)
..++|+|+||+|+||++++..|+++|+- |.- .+ .|...++-..+..+|.... ..+ .++.-.....+++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~-----V~g-tV-R~~~~~k~~~~L~~l~~a~-~~l~l~~aDL~d~~sf~~ai 76 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYT-----VRG-TV-RDPEDEKKTEHLRKLEGAK-ERLKLFKADLLDEGSFDKAI 76 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCE-----EEE-EE-cCcchhhhHHHHHhcccCc-ccceEEeccccccchHHHHH
Confidence 4689999999999999999999999972 311 11 1222122222455555332 111 1222223345799
Q ss_pred CCCcEEEEeCCcCCCCCC-chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH
Q 015501 171 EDAEWALLIGAKPRGPGM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~-~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (405)
++||.|+.+|....-... .-.++++-+++-...+.+.+.+. +..+=+|+|.-+..
T Consensus 77 ~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~--~sVkrvV~TSS~aA 132 (327)
T KOG1502|consen 77 DGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKT--KSVKRVVYTSSTAA 132 (327)
T ss_pred hCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhcc--CCcceEEEeccHHH
Confidence 999999998753211111 13357777888888999999986 36666667765543
No 95
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.16 E-value=0.0037 Score=60.94 Aligned_cols=98 Identities=28% Similarity=0.255 Sum_probs=58.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchh-hhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~-~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|||+||| +|.+|.+++..|+..+.... ..+.+ ++++. ++++..+.++ .+.+..+..+.+++||+
T Consensus 4 mkI~~IG-~G~mG~aia~~l~~~g~~~~-~~v~v----~~r~~~~~~~~l~~~~---------g~~~~~~~~e~~~~aDv 68 (279)
T PRK07679 4 QNISFLG-AGSIAEAIIGGLLHANVVKG-EQITV----SNRSNETRLQELHQKY---------GVKGTHNKKELLTDANI 68 (279)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCCc-ceEEE----ECCCCHHHHHHHHHhc---------CceEeCCHHHHHhcCCE
Confidence 6999999 59999999999998874322 23433 45543 3344333211 13344556677899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
||++.. | +.+.++.+.+..+..++.+||.+.+-+
T Consensus 69 Vilav~----p------------~~~~~vl~~l~~~~~~~~liIs~~aGi 102 (279)
T PRK07679 69 LFLAMK----P------------KDVAEALIPFKEYIHNNQLIISLLAGV 102 (279)
T ss_pred EEEEeC----H------------HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 998732 1 223333344544433556676664544
No 96
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.13 E-value=0.0021 Score=62.77 Aligned_cols=104 Identities=17% Similarity=0.179 Sum_probs=59.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC-cceEE--E-ecCcccccCC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVK--I-GINPYELFED 172 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~-~~~v~--i-~~~~~eal~d 172 (405)
|||+|||| |.+|..++..|...|. ++.+ ++++.+.++....+ .. .. ..... + ..++.+.+++
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~-----~V~~----~~r~~~~~~~~~~~---g~-~~~~~~~~~~~~~~~~~~~~~~ 66 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH-----DVTL----VARRGAHLDALNEN---GL-RLEDGEITVPVLAADDPAELGP 66 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----eEEE----EECChHHHHHHHHc---CC-cccCCceeecccCCCChhHcCC
Confidence 58999995 9999999999998763 3555 34444444432211 10 00 11111 1 1233344589
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHH
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~ 230 (405)
+|+||++... .-..++.+.+..+-+++..||...|..+..-.
T Consensus 67 ~d~vila~k~----------------~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~ 108 (304)
T PRK06522 67 QDLVILAVKA----------------YQLPAALPSLAPLLGPDTPVLFLQNGVGHLEE 108 (304)
T ss_pred CCEEEEeccc----------------ccHHHHHHHHhhhcCCCCEEEEecCCCCcHHH
Confidence 9999987431 11233344444443467788899998765443
No 97
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=97.13 E-value=0.0041 Score=64.72 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=67.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC-cccccC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN-PYELFE 171 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~-~~eal~ 171 (405)
++.|||.|+||+|+||++++..|+..+. +|.. +|+...........+. .. .++.+. .+ ..+.+.
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~-----~V~~----ldr~~~~~~~~~~~~~----~~-~~~~~~~~Di~~~~~~ 183 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD-----EVIV----IDNFFTGRKENLVHLF----GN-PRFELIRHDVVEPILL 183 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCC-----EEEE----EeCCCCccHhHhhhhc----cC-CceEEEECcccccccc
Confidence 4568999999999999999999998764 2433 2221110010011111 00 112221 12 234577
Q ss_pred CCcEEEEeCCcCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 172 DAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 172 dADiVIi~~g~~~--k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++|+||.+++... ....+..+.+..|+.....+.+.+++.. ..+|.++.
T Consensus 184 ~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g---~r~V~~SS 234 (436)
T PLN02166 184 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG---ARFLLTST 234 (436)
T ss_pred CCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhC---CEEEEECc
Confidence 8999999876421 1122445677899999999999998862 36666654
No 98
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.13 E-value=0.0024 Score=62.29 Aligned_cols=65 Identities=22% Similarity=0.267 Sum_probs=42.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| .|.+|..++..|...+. +|.+ +|++++.++.. .+. .. +.....+.+++++||+|
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~-----~V~~----~d~~~~~~~~a-~~~--g~------~~~~~~~~~~~~~aDlV 61 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGH-----TVYG----VSRRESTCERA-IER--GL------VDEASTDLSLLKDCDLV 61 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHH-HHC--CC------cccccCCHhHhcCCCEE
Confidence 5899999 59999999999998763 2444 45655554422 111 00 11123345678999999
Q ss_pred EEeC
Q 015501 177 LLIG 180 (405)
Q Consensus 177 Ii~~ 180 (405)
|++.
T Consensus 62 ilav 65 (279)
T PRK07417 62 ILAL 65 (279)
T ss_pred EEcC
Confidence 9983
No 99
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.10 E-value=0.0037 Score=61.05 Aligned_cols=100 Identities=21% Similarity=0.247 Sum_probs=57.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch-hhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~-~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
|+||+||| +|.+|..++..|...+.+.. ..+.+ ++++ .++++... ... ..+.++.+..+.++++|
T Consensus 1 m~~I~iIG-~G~mG~ala~~L~~~g~~~~-~~V~~----~~r~~~~~~~~l~----~~~----~~~~~~~~~~e~~~~aD 66 (277)
T PRK06928 1 MEKIGFIG-YGSMADMIATKLLETEVATP-EEIIL----YSSSKNEHFNQLY----DKY----PTVELADNEAEIFTKCD 66 (277)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCCCc-ccEEE----EeCCcHHHHHHHH----HHc----CCeEEeCCHHHHHhhCC
Confidence 57999999 59999999999998774321 23433 3332 22222221 111 12344456667789999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+||++.. .+.+.++.+.+..+..++..||.+.|-+
T Consensus 67 vVilavp----------------p~~~~~vl~~l~~~l~~~~~ivS~~aGi 101 (277)
T PRK06928 67 HSFICVP----------------PLAVLPLLKDCAPVLTPDRHVVSIAAGV 101 (277)
T ss_pred EEEEecC----------------HHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 9998733 1334455555544332344566666644
No 100
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.07 E-value=0.0037 Score=62.42 Aligned_cols=105 Identities=20% Similarity=0.112 Sum_probs=59.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC-------CcceEEEecCccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-------LLREVKIGINPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~-------~~~~v~i~~~~~e 168 (405)
||||+||| +|.||..++..|...|. .+.+ ++++.. .+....+-...... ...++..+ .+.+
T Consensus 2 ~mkI~IiG-~G~mG~~~A~~L~~~G~-----~V~~----~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 69 (341)
T PRK08229 2 MARICVLG-AGSIGCYLGGRLAAAGA-----DVTL----IGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFS-TDPA 69 (341)
T ss_pred CceEEEEC-CCHHHHHHHHHHHhcCC-----cEEE----EecHHH-HHHHHhcCceeecCCCcceecccceeEec-cChh
Confidence 47899999 59999999999998774 3554 344321 12111100000000 00122333 3457
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 015501 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (405)
+++++|+||++...+. ..++.+.+..+.+++.+|+..+|..+..
T Consensus 70 ~~~~~D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 70 ALATADLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred hccCCCEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 8899999999743211 1233344455444677888888987643
No 101
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=97.05 E-value=0.0018 Score=65.67 Aligned_cols=128 Identities=18% Similarity=0.212 Sum_probs=70.2
Q ss_pred cceeeEEeeccchhHhhhhccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc
Q 015501 74 CYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153 (405)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~ 153 (405)
.||.+++... +.++ -++.+.|||.|+||+|+||++++..|...|. +|.. +++..... +.+.
T Consensus 2 ~~~~~~~~~~-~~~~--~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~-----~V~~----v~r~~~~~------~~~~- 62 (370)
T PLN02695 2 SYGAYTLAEL-EREP--YWPSEKLRICITGAGGFIASHIARRLKAEGH-----YIIA----SDWKKNEH------MSED- 62 (370)
T ss_pred Cccccchhhc-CCCC--CCCCCCCEEEEECCccHHHHHHHHHHHhCCC-----EEEE----EEeccccc------cccc-
Confidence 5676554322 2222 2555678999999999999999999998764 2332 23221110 0000
Q ss_pred CCCcceEE---Ee--cCcccccCCCcEEEEeCCcCCCCCC---chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 154 FPLLREVK---IG--INPYELFEDAEWALLIGAKPRGPGM---ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 154 ~~~~~~v~---i~--~~~~eal~dADiVIi~~g~~~k~g~---~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.....+. ++ ....+.++++|+||.+++.....+. +....+..|......+++.+++. +.+ .+|.++.
T Consensus 63 -~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~-~vk-~~V~~SS 137 (370)
T PLN02695 63 -MFCHEFHLVDLRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARIN-GVK-RFFYASS 137 (370)
T ss_pred -cccceEEECCCCCHHHHHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHh-CCC-EEEEeCc
Confidence 0000111 10 1112346789999998764211111 22334567888888888888775 233 4555553
No 102
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.03 E-value=0.008 Score=59.36 Aligned_cols=70 Identities=23% Similarity=0.271 Sum_probs=44.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
.+||+||| +|.+|..++..|...+... .+.+ +|++.+.++. +.++ .. ...+..+..+++++||+
T Consensus 6 ~~~I~IIG-~G~mG~sla~~l~~~g~~~---~V~~----~dr~~~~~~~-a~~~-----g~--~~~~~~~~~~~~~~aDv 69 (307)
T PRK07502 6 FDRVALIG-IGLIGSSLARAIRRLGLAG---EIVG----ADRSAETRAR-AREL-----GL--GDRVTTSAAEAVKGADL 69 (307)
T ss_pred CcEEEEEe-eCHHHHHHHHHHHhcCCCc---EEEE----EECCHHHHHH-HHhC-----CC--CceecCCHHHHhcCCCE
Confidence 46999999 5999999999999876421 2433 4565555432 2211 11 11223445677899999
Q ss_pred EEEeCC
Q 015501 176 ALLIGA 181 (405)
Q Consensus 176 VIi~~g 181 (405)
||++..
T Consensus 70 Viiavp 75 (307)
T PRK07502 70 VILCVP 75 (307)
T ss_pred EEECCC
Confidence 999743
No 103
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.00 E-value=0.0034 Score=62.03 Aligned_cols=108 Identities=13% Similarity=0.084 Sum_probs=60.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC-cceEEEecCcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~dADi 175 (405)
|||.|+||+|++|++++..|+..|. +|.. ..++.++.. .+.+..... ..++.-.....++++++|+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~-----~V~~----l~R~~~~~~----~l~~~~v~~v~~Dl~d~~~l~~al~g~d~ 67 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY-----QVRC----LVRNLRKAS----FLKEWGAELVYGDLSLPETLPPSFKGVTA 67 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----eEEE----EEcChHHhh----hHhhcCCEEEECCCCCHHHHHHHHCCCCE
Confidence 5899999999999999999998764 2432 233322221 111110000 0011101123567899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
||.+++.. + .+.......|......+.+++++. +-+ .+|.+|
T Consensus 68 Vi~~~~~~--~-~~~~~~~~~~~~~~~~l~~aa~~~-gvk-r~I~~S 109 (317)
T CHL00194 68 IIDASTSR--P-SDLYNAKQIDWDGKLALIEAAKAA-KIK-RFIFFS 109 (317)
T ss_pred EEECCCCC--C-CCccchhhhhHHHHHHHHHHHHHc-CCC-EEEEec
Confidence 99875421 1 112234455666677788877775 233 455544
No 104
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.97 E-value=0.0038 Score=53.15 Aligned_cols=97 Identities=22% Similarity=0.196 Sum_probs=54.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVI 177 (405)
||+|+||+|.+|..++..|....-+. +. .++.......+. ..+..... ....+..+...+.+.+.++|+||
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e----~~-~~~~~~~~~g~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~Dvvf 71 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFE----LV-ALVSSSRSAGKP---LSEVFPHP-KGFEDLSVEDADPEELSDVDVVF 71 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEE----EE-EEEESTTTTTSB---HHHTTGGG-TTTEEEBEEETSGHHHTTESEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCcc----EE-EeeeeccccCCe---eehhcccc-ccccceeEeecchhHhhcCCEEE
Confidence 79999999999999999999854421 21 122222211111 11111101 11234555556778889999999
Q ss_pred EeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 178 i~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
++.+ ...-+++++.+.+ .+.+||-.+
T Consensus 72 ~a~~----------------~~~~~~~~~~~~~---~g~~ViD~s 97 (121)
T PF01118_consen 72 LALP----------------HGASKELAPKLLK---AGIKVIDLS 97 (121)
T ss_dssp E-SC----------------HHHHHHHHHHHHH---TTSEEEESS
T ss_pred ecCc----------------hhHHHHHHHHHhh---CCcEEEeCC
Confidence 9854 2455666666643 345665544
No 105
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.94 E-value=0.0067 Score=61.93 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=48.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE--ecCcccccCCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI--GINPYELFEDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i--~~~~~eal~dA 173 (405)
|+||.|||| |+||+.+|..|++.+- + +|.+ -|++.+++...... .+.... ...+.+ .....+.+++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~---~V~i----AdRs~~~~~~i~~~-~~~~v~-~~~vD~~d~~al~~li~~~ 69 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-G---EVTI----ADRSKEKCARIAEL-IGGKVE-ALQVDAADVDALVALIKDF 69 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-c---eEEE----EeCCHHHHHHHHhh-ccccce-eEEecccChHHHHHHHhcC
Confidence 689999996 9999999999999875 2 3665 57776666544322 111000 011222 12345888999
Q ss_pred cEEEEeCC
Q 015501 174 EWALLIGA 181 (405)
Q Consensus 174 DiVIi~~g 181 (405)
|+||.++.
T Consensus 70 d~VIn~~p 77 (389)
T COG1748 70 DLVINAAP 77 (389)
T ss_pred CEEEEeCC
Confidence 99998854
No 106
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0095 Score=58.39 Aligned_cols=120 Identities=17% Similarity=0.217 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHH-HHHHHhhhhcCCCcceEEEecC-cccccCCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGIN-PYELFEDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~-g~a~DL~d~~~~~~~~v~i~~~-~~eal~dA 173 (405)
+++|+|+| .|.||..++..|...+.. +. .++.|++.+.++ +..+++.|. .+.+ ..++.++|
T Consensus 3 ~~~v~IvG-~GliG~s~a~~l~~~g~~-----v~--i~g~d~~~~~~~~a~~lgv~d~---------~~~~~~~~~~~~a 65 (279)
T COG0287 3 SMKVGIVG-LGLMGGSLARALKEAGLV-----VR--IIGRDRSAATLKAALELGVIDE---------LTVAGLAEAAAEA 65 (279)
T ss_pred CcEEEEEC-CchHHHHHHHHHHHcCCe-----EE--EEeecCcHHHHHHHhhcCcccc---------cccchhhhhcccC
Confidence 57999999 599999999999998873 32 334565544332 111222221 1122 26888999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecch
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR 249 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~ 249 (405)
|+||++. | +....++.+.+..+.+++++|.-+|--=......+.++.+... +.+|+-.+
T Consensus 66 D~Vivav--P--------------i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM 124 (279)
T COG0287 66 DLVIVAV--P--------------IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPM 124 (279)
T ss_pred CEEEEec--c--------------HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCC
Confidence 9999973 3 2333444444443334677776666433333344444432211 45554333
No 107
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.85 E-value=0.0099 Score=61.48 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=62.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH--------hhhhcC--CCcceEEEecC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--------LEDSLF--PLLREVKIGIN 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D--------L~d~~~--~~~~~v~i~~~ 165 (405)
++||+||| .|.||..+|..|+..|. ++.. +|+++++++..... +.+... --......++
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~-----~V~~----~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~- 71 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQK-----QVIG----VDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT- 71 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCC-----EEEE----EeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec-
Confidence 58999999 59999999999999774 2443 46666666542211 000000 0001233332
Q ss_pred cccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-CchhH
Q 015501 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNT 227 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP~d~ 227 (405)
++++||+||++...|.+... . -+...+.+.++.+.++..++.+||+-| -|...
T Consensus 72 ---~~~~aDvvii~vptp~~~~~-~-----~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgt 125 (415)
T PRK11064 72 ---TPEPADAFLIAVPTPFKGDH-E-----PDLTYVEAAAKSIAPVLKKGDLVILESTSPVGA 125 (415)
T ss_pred ---ccccCCEEEEEcCCCCCCCC-C-----cChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCH
Confidence 24589999998665532221 1 123444455555666554555655554 35543
No 108
>PLN02206 UDP-glucuronate decarboxylase
Probab=96.82 E-value=0.0088 Score=62.34 Aligned_cols=112 Identities=11% Similarity=0.111 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC-cccccCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN-PYELFED 172 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~-~~eal~d 172 (405)
+.|||.|+||+|+||++++..|+..+. +|.. +|...........+.. . . .++++ ..| ...++.+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-----~V~~----ld~~~~~~~~~~~~~~--~-~--~~~~~i~~D~~~~~l~~ 183 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-----SVIV----VDNFFTGRKENVMHHF--S-N--PNFELIRHDVVEPILLE 183 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-----EEEE----EeCCCccchhhhhhhc--c-C--CceEEEECCccChhhcC
Confidence 568999999999999999999998764 2332 1211111111111110 0 0 11222 112 2345678
Q ss_pred CcEEEEeCCcCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 173 AEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 173 ADiVIi~~g~~~--k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+|+||.+++... ....+....+..|+.....+.+.+++. + .++|.++.
T Consensus 184 ~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~-g--~r~V~~SS 233 (442)
T PLN02206 184 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-G--ARFLLTST 233 (442)
T ss_pred CCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHh-C--CEEEEECC
Confidence 999999876432 111234466788999889999888875 2 36766664
No 109
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.78 E-value=0.0056 Score=60.55 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+.|||+||| +|.+|.+++..|...|. +|.+ .+++.. .+..+++++||
T Consensus 3 ~~m~I~iiG-~G~~G~~lA~~l~~~G~-----~V~~----~~r~~~-----------------------~~~~~~~~~ad 49 (308)
T PRK14619 3 QPKTIAILG-AGAWGSTLAGLASANGH-----RVRV----WSRRSG-----------------------LSLAAVLADAD 49 (308)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHCCC-----EEEE----EeCCCC-----------------------CCHHHHHhcCC
Confidence 357999999 59999999999998774 3544 333321 13346778999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhh-cCCCeEEEEeCCc
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV-ASRNVKVIVVGNP 224 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~-a~p~a~vIvvtNP 224 (405)
+||++. | .+.+.++++.+..+ ..++.+++..++.
T Consensus 50 vvi~~v--p--------------~~~~~~v~~~l~~~~~~~~~ivi~~s~g 84 (308)
T PRK14619 50 VIVSAV--S--------------MKGVRPVAEQVQALNLPPETIIVTATKG 84 (308)
T ss_pred EEEEEC--C--------------hHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence 999873 2 13445555556542 2367788888773
No 110
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=96.75 E-value=0.0031 Score=61.65 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=68.1
Q ss_pred EEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcC--CCcceEEEecCcccccCCCcEEEE
Q 015501 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFEDAEWALL 178 (405)
Q Consensus 101 IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~--~~~~~v~i~~~~~eal~dADiVIi 178 (405)
|+||+|++|++++..|++.+-. ..++.+|.......+. ++.+... .+..+++-..+..++++++|+||.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~-----~~Vr~~d~~~~~~~~~----~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H 72 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYI-----YEVRVLDRSPPPKFLK----DLQKSGVKEYIQGDITDPESLEEALEGVDVVFH 72 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCc-----eEEEEcccccccccch----hhhcccceeEEEeccccHHHHHHHhcCCceEEE
Confidence 8999999999999999998742 1233333322211111 1111110 011222222345689999999999
Q ss_pred eCCcCCCCC-CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 179 IGAKPRGPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 179 ~~g~~~k~g-~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
++....-.+ ..+..+...|+.--+.+.+.+.+. +.+-+|+|.-++
T Consensus 73 ~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~---~VkrlVytSS~~ 118 (280)
T PF01073_consen 73 TAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKA---GVKRLVYTSSIS 118 (280)
T ss_pred eCccccccCcccHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEEcCcc
Confidence 876432223 345567888999999999888874 455455554443
No 111
>PLN02427 UDP-apiose/xylose synthase
Probab=96.75 E-value=0.0031 Score=64.02 Aligned_cols=114 Identities=16% Similarity=0.068 Sum_probs=62.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcC-CCcceEEEec-------Cc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-PLLREVKIGI-------NP 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~-~~~~~v~i~~-------~~ 166 (405)
++|||.|+||+|+||++++..|+..+-. +|.. ++++.++.. .+..... ....++++.. ..
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~----~V~~----l~r~~~~~~----~l~~~~~~~~~~~~~~~~~Dl~d~~~l 80 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPH----KVLA----LDVYNDKIK----HLLEPDTVPWSGRIQFHRINIKHDSRL 80 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCC----EEEE----EecCchhhh----hhhccccccCCCCeEEEEcCCCChHHH
Confidence 4689999999999999999999986311 2332 233322222 1111000 0011222211 12
Q ss_pred ccccCCCcEEEEeCCcCCC--CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 YELFEDAEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k--~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.++++++|+||.+++.... ...+..+.+..|+.-...+.+.+++. + ..+|.++.
T Consensus 81 ~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~-~--~r~v~~SS 136 (386)
T PLN02427 81 EGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSEN-N--KRLIHFST 136 (386)
T ss_pred HHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhc-C--CEEEEEee
Confidence 3567789999998764321 11122344556766666667766664 2 35666664
No 112
>PLN02650 dihydroflavonol-4-reductase
Probab=96.70 E-value=0.0087 Score=59.78 Aligned_cols=116 Identities=11% Similarity=0.101 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-----Ee--cCccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IG--INPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-----i~--~~~~e 168 (405)
.++|.|+||+|+||++++..|+..|. .|.+ .+++.+.+.... ++.... ....++. ++ ....+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~-----~V~~----~~r~~~~~~~~~-~~~~~~-~~~~~~~~v~~Dl~d~~~~~~ 73 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY-----TVRA----TVRDPANVKKVK-HLLDLP-GATTRLTLWKADLAVEGSFDD 73 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC-----EEEE----EEcCcchhHHHH-HHHhcc-CCCCceEEEEecCCChhhHHH
Confidence 46899999999999999999998764 2433 122222222221 121110 0000111 11 11235
Q ss_pred ccCCCcEEEEeCCcCCCCCCch-hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 LFEDAEWALLIGAKPRGPGMER-AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r-~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.++++|+||.+++.......+. ...+..|+.-...+.+.+.+.. .-.++|.++-
T Consensus 74 ~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~~~r~v~~SS 128 (351)
T PLN02650 74 AIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAK-TVRRIVFTSS 128 (351)
T ss_pred HHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcC-CceEEEEecc
Confidence 6778999998876421111122 2456778888888888887752 2245666553
No 113
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=96.69 E-value=0.017 Score=59.94 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC----------cceEEEec
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL----------LREVKIGI 164 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~----------~~~v~i~~ 164 (405)
++|||+||| .|.||..+|..|+.+ + ++.. +|+++++.+... ....+. ......+
T Consensus 5 ~~mkI~vIG-lGyvGlpmA~~la~~--~----~V~g----~D~~~~~ve~l~----~G~~~~~e~~~~~l~~~g~l~~t- 68 (425)
T PRK15182 5 DEVKIAIIG-LGYVGLPLAVEFGKS--R----QVVG----FDVNKKRILELK----NGVDVNLETTEEELREARYLKFT- 68 (425)
T ss_pred CCCeEEEEC-cCcchHHHHHHHhcC--C----EEEE----EeCCHHHHHHHH----CcCCCCCCCCHHHHHhhCCeeEE-
Confidence 468999999 799999999998763 2 2433 466666655433 111110 0123444
Q ss_pred CcccccCCCcEEEEeCCcCC
Q 015501 165 NPYELFEDAEWALLIGAKPR 184 (405)
Q Consensus 165 ~~~eal~dADiVIi~~g~~~ 184 (405)
.+.+++++||++|++.+.|.
T Consensus 69 ~~~~~~~~advvii~Vptp~ 88 (425)
T PRK15182 69 SEIEKIKECNFYIITVPTPI 88 (425)
T ss_pred eCHHHHcCCCEEEEEcCCCC
Confidence 34568999999999877664
No 114
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=96.65 E-value=0.0087 Score=57.82 Aligned_cols=91 Identities=12% Similarity=0.140 Sum_probs=55.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| +|.+|++++..|...+.+.. +.+.. .+++.+++ .+....+..+.++++|+|
T Consensus 4 mkI~iIG-~G~mG~ai~~~l~~~~~~~~-~~i~~----~~~~~~~~----------------~~~~~~~~~~~~~~~D~V 61 (260)
T PTZ00431 4 IRVGFIG-LGKMGSALAYGIENSNIIGK-ENIYY----HTPSKKNT----------------PFVYLQSNEELAKTCDII 61 (260)
T ss_pred CEEEEEC-ccHHHHHHHHHHHhCCCCCc-ceEEE----ECCChhcC----------------CeEEeCChHHHHHhCCEE
Confidence 6899999 59999999999998875543 23433 44443321 012234556778899999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
|++.. .+.+.++.+.+..+- ++..||.+.+-+.
T Consensus 62 ilavk----------------p~~~~~vl~~i~~~l-~~~~iIS~~aGi~ 94 (260)
T PTZ00431 62 VLAVK----------------PDLAGKVLLEIKPYL-GSKLLISICGGLN 94 (260)
T ss_pred EEEeC----------------HHHHHHHHHHHHhhc-cCCEEEEEeCCcc
Confidence 98722 134555555555442 2334555555443
No 115
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.65 E-value=0.027 Score=54.75 Aligned_cols=116 Identities=20% Similarity=0.113 Sum_probs=75.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-C-------
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N------- 165 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~------- 165 (405)
.++.++.|+||++.||..+|..|+.+|. .+.| +.+++++|+..+.+|++.. .. ++.+.. |
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-----~liL----vaR~~~kL~~la~~l~~~~-~v--~v~vi~~DLs~~~~~ 71 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-----NLIL----VARREDKLEALAKELEDKT-GV--EVEVIPADLSDPEAL 71 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCcHHHHHHHHHHHHHhh-Cc--eEEEEECcCCChhHH
Confidence 3467999999999999999999999886 3555 7899999999999998754 21 222211 1
Q ss_pred ------cccccCCCcEEEEeCCcCC------CCCCchhhhHHhhHHHHH----HHHHHHHhhcCCCeEEEEeCC
Q 015501 166 ------PYELFEDAEWALLIGAKPR------GPGMERAGLLDINGQIFA----EQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 166 ------~~eal~dADiVIi~~g~~~------k~g~~r~~ll~~N~~i~~----~i~~~i~~~a~p~a~vIvvtN 223 (405)
..+..-..|+.|..+|... .+..+-.+++.-|+--.. .+.+.+.+- ..|.||+++-
T Consensus 72 ~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~--~~G~IiNI~S 143 (265)
T COG0300 72 ERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVER--GAGHIINIGS 143 (265)
T ss_pred HHHHHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 1112235888888877532 112233456666655444 444555553 3577777763
No 116
>PLN00198 anthocyanidin reductase; Provisional
Probab=96.62 E-value=0.0092 Score=59.24 Aligned_cols=114 Identities=15% Similarity=0.143 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ec------Cccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI------NPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~------~~~e 168 (405)
++||.|+||+|+||++++..|+..+. +|.+.. .+. +...... ++.... .. .++.+ .. ...+
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~-----~V~~~~--r~~--~~~~~~~-~~~~~~-~~-~~~~~~~~Dl~d~~~~~~ 76 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGY-----AVNTTV--RDP--ENQKKIA-HLRALQ-EL-GDLKIFGADLTDEESFEA 76 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCC-----EEEEEE--CCC--CCHHHHH-HHHhcC-CC-CceEEEEcCCCChHHHHH
Confidence 57899999999999999999998764 243212 222 1111111 111100 00 11211 11 1235
Q ss_pred ccCCCcEEEEeCCcCCCCCCc-hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~-r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
.++++|+||..++.......+ ..++...|+.-...+.+.+.+.. .-..+|.++
T Consensus 77 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~-~~~~~v~~S 130 (338)
T PLN00198 77 PIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAK-SVKRVILTS 130 (338)
T ss_pred HHhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcC-CccEEEEee
Confidence 578899999887642211112 22355778888888888887752 223555554
No 117
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.60 E-value=0.0032 Score=56.48 Aligned_cols=90 Identities=19% Similarity=0.161 Sum_probs=58.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-------CcccccC
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-------NPYELFE 171 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-------~~~eal~ 171 (405)
|+|+||+|++|+.++..|++.+. +|.+ +-++.++++. . + ++++.. ...++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-----~V~~----~~R~~~~~~~--------~-~---~~~~~~~d~~d~~~~~~al~ 59 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-----EVTA----LVRSPSKAED--------S-P---GVEIIQGDLFDPDSVKAALK 59 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-----EEEE----EESSGGGHHH--------C-T---TEEEEESCTTCHHHHHHHHT
T ss_pred eEEECCCChHHHHHHHHHHHCCC-----EEEE----EecCchhccc--------c-c---ccccceeeehhhhhhhhhhh
Confidence 78999999999999999999883 3443 2345555443 1 1 122211 1356888
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
++|.||.+.+.+.+ ....++.+.+.+++. +. .+++.++
T Consensus 60 ~~d~vi~~~~~~~~-----------~~~~~~~~~~a~~~~-~~-~~~v~~s 97 (183)
T PF13460_consen 60 GADAVIHAAGPPPK-----------DVDAAKNIIEAAKKA-GV-KRVVYLS 97 (183)
T ss_dssp TSSEEEECCHSTTT-----------HHHHHHHHHHHHHHT-TS-SEEEEEE
T ss_pred hcchhhhhhhhhcc-----------ccccccccccccccc-cc-ccceeee
Confidence 99999998764332 167788888888885 23 3555554
No 118
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=96.58 E-value=0.0086 Score=59.47 Aligned_cols=117 Identities=9% Similarity=0.034 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe--cCcccccCCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~eal~dA 173 (405)
.++|.|+||+|++|++++..|+..+-. ..|.+ .+++.........++......+ ....++ ....+++++.
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~---~~V~~----~~r~~~~~~~~~~~~~~~~~~~-v~~Dl~d~~~l~~~~~~i 75 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNP---KKIII----YSRDELKQWEMQQKFPAPCLRF-FIGDVRDKERLTRALRGV 75 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCC---cEEEE----EcCChhHHHHHHHHhCCCcEEE-EEccCCCHHHHHHHHhcC
Confidence 478999999999999999999986411 12433 2333233222222221100000 001111 1123466789
Q ss_pred cEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 174 EWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 174 DiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
|+||.+++....+ ..+..+.+..|+.-...+.+.+.+. .-+.||.++
T Consensus 76 D~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~--~~~~iV~~S 124 (324)
T TIGR03589 76 DYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDN--GVKRVVALS 124 (324)
T ss_pred CEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEe
Confidence 9999987753222 1233457788888888888888875 223566655
No 119
>PLN02778 3,5-epimerase/4-reductase
Probab=96.57 E-value=0.021 Score=56.09 Aligned_cols=88 Identities=7% Similarity=0.035 Sum_probs=56.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
.|||.|+||+|++|++++..|+..+. ++.+. ..+. ...+.+..|+.+ .++|+
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~-----~V~~~--~~~~--~~~~~v~~~l~~-------------------~~~D~ 60 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGI-----DFHYG--SGRL--ENRASLEADIDA-------------------VKPTH 60 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCC-----EEEEe--cCcc--CCHHHHHHHHHh-------------------cCCCE
Confidence 37999999999999999999998764 24321 1111 111222222221 16899
Q ss_pred EEEeCCcCCCCC-----CchhhhHHhhHHHHHHHHHHHHhh
Q 015501 176 ALLIGAKPRGPG-----MERAGLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 176 VIi~~g~~~k~g-----~~r~~ll~~N~~i~~~i~~~i~~~ 211 (405)
||.+++....+. .+..+....|......+++.+++.
T Consensus 61 ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~ 101 (298)
T PLN02778 61 VFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRER 101 (298)
T ss_pred EEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 998877543222 134456788888888888888876
No 120
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.53 E-value=0.0048 Score=61.52 Aligned_cols=107 Identities=10% Similarity=0.087 Sum_probs=60.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC---c----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN---P---- 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~---~---- 166 (405)
||||.|+||+|++|++++..|+.. +. .|.. +++..+... ++... + .+.+. .| +
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~-----~V~~----~~r~~~~~~----~~~~~--~---~~~~~~~Dl~~~~~~~ 62 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW-----EVYG----MDMQTDRLG----DLVNH--P---RMHFFEGDITINKEWI 62 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC-----eEEE----EeCcHHHHH----HhccC--C---CeEEEeCCCCCCHHHH
Confidence 579999999999999999999874 32 2332 233322211 11110 0 11111 11 1
Q ss_pred ccccCCCcEEEEeCCcCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 YELFEDAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~--k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+.++++|+||.+++... ....+.......|..-...+.+.+.+. + ..+|.++.
T Consensus 63 ~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~-~--~~~v~~SS 118 (347)
T PRK11908 63 EYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G--KHLVFPST 118 (347)
T ss_pred HHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhc-C--CeEEEEec
Confidence 245679999998765421 112223334556777777788877774 2 46665554
No 121
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=96.51 E-value=0.028 Score=56.24 Aligned_cols=121 Identities=12% Similarity=-0.002 Sum_probs=66.6
Q ss_pred hhccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC-CcceEEEec-C---
Q 015501 91 KSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-LLREVKIGI-N--- 165 (405)
Q Consensus 91 ~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~-~~~~v~i~~-~--- 165 (405)
|-.-+++||.|+||+|++|++++..|+..+. +|.. +|+..........++...... ...++.+.. |
T Consensus 10 ~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~-----~V~~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (348)
T PRK15181 10 KLVLAPKRWLITGVAGFIGSGLLEELLFLNQ-----TVIG----LDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRK 80 (348)
T ss_pred cccccCCEEEEECCccHHHHHHHHHHHHCCC-----EEEE----EeCCCCcchhhhhhhhhccccccCCceEEEEccCCC
Confidence 3434568999999999999999999998764 2322 222111111000111100000 001122211 2
Q ss_pred ---cccccCCCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 166 ---PYELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 166 ---~~eal~dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
..+.++++|+||..++....+ ..+.......|..-...+.+.+++. +-. .+|.++
T Consensus 81 ~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~-~~v~~S 140 (348)
T PRK15181 81 FTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDA-HVS-SFTYAA 140 (348)
T ss_pred HHHHHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEee
Confidence 123478899999987643221 1233456778888888888888875 222 455554
No 122
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.51 E-value=0.013 Score=61.56 Aligned_cols=105 Identities=20% Similarity=0.222 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC---C
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---D 172 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~---d 172 (405)
|.+|+||| .|.+|..+|..|+..|. .|.+ .|++.++.+.......... ..+....+..+.++ +
T Consensus 1 ~~~IgvIG-LG~MG~~lA~nL~~~G~-----~V~v----~dr~~~~~~~l~~~~~~~g----~~i~~~~s~~e~v~~l~~ 66 (470)
T PTZ00142 1 MSDIGLIG-LAVMGQNLALNIASRGF-----KISV----YNRTYEKTEEFVKKAKEGN----TRVKGYHTLEELVNSLKK 66 (470)
T ss_pred CCEEEEEe-EhHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHhhhhcC----CcceecCCHHHHHhcCCC
Confidence 46899999 69999999999999875 2554 5677676654433211101 12333444445554 5
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--chhHHH
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNA 229 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN--P~d~~t 229 (405)
+|+|+++... .+.++++.+.+..+..++.+||..+| |-++.-
T Consensus 67 ~d~Iil~v~~---------------~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~ 110 (470)
T PTZ00142 67 PRKVILLIKA---------------GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTER 110 (470)
T ss_pred CCEEEEEeCC---------------hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHH
Confidence 8988776321 24555555556555557788999997 455443
No 123
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=96.50 E-value=0.011 Score=58.01 Aligned_cols=115 Identities=16% Similarity=0.044 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-------cCccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-------~~~~e 168 (405)
-+||.|+||+|+||++++..|+..|. ++... .++.+... ....+.... ....++.+. ....+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~-----~V~~~----~r~~~~~~-~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~ 72 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY-----TVKAT----VRDPNDPK-KTEHLLALD-GAKERLHLFKANLLEEGSFDS 72 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC-----EEEEE----EcCCCchh-hHHHHHhcc-CCCCceEEEeccccCcchHHH
Confidence 46899999999999999999998775 24321 12212111 111111100 000111111 12335
Q ss_pred ccCCCcEEEEeCCcCCCCCCc-hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~-r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+++++|+||..++........ ....+..|+.-...+.+.+.+..+. ..+|.++
T Consensus 73 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~~v~~S 126 (322)
T PLN02662 73 VVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSV-KRVVVTS 126 (322)
T ss_pred HHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEcc
Confidence 678999999987643211112 2256677888888888887764111 2455544
No 124
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=96.48 E-value=0.0035 Score=61.67 Aligned_cols=122 Identities=20% Similarity=0.141 Sum_probs=68.7
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcC--CCcceEEEe-cC------cccc
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIG-IN------PYEL 169 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~--~~~~~v~i~-~~------~~ea 169 (405)
|.|+||+|+||+.++..|+..+.. .|. + .|+++..+.....++..... .+...+... .| ....
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~----~li--l--~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~ 72 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPK----KLI--L--FDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRI 72 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-S----EEE--E--EES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCC----eEE--E--eCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHH
Confidence 679999999999999999987541 243 3 56777788877777742210 111111111 11 2456
Q ss_pred cC--CCcEEEEeCCcCCCCCCc--hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC----CchhHHH
Q 015501 170 FE--DAEWALLIGAKPRGPGME--RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG----NPCNTNA 229 (405)
Q Consensus 170 l~--dADiVIi~~g~~~k~g~~--r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt----NP~d~~t 229 (405)
++ +.|+|+.+|..-.-|-++ -.+.+.-|+-=-+.+++...++ +-+-.|.+-| ||.++|.
T Consensus 73 ~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~-~v~~~v~ISTDKAv~PtnvmG 139 (293)
T PF02719_consen 73 FEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEH-GVERFVFISTDKAVNPTNVMG 139 (293)
T ss_dssp TT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHT-T-SEEEEEEECGCSS--SHHH
T ss_pred HhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEccccccCCCCcHHH
Confidence 67 999999987643222222 3345677777777888888886 3555555555 5766654
No 125
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.43 E-value=0.011 Score=58.14 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=56.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| .|.+|..++..|+..+. ++.+ .|++.++++..... .. .. .....+..+.+.++|+|
T Consensus 1 M~Ig~IG-lG~mG~~la~~L~~~g~-----~V~~----~dr~~~~~~~l~~~---g~-~~---~~s~~~~~~~~~~~dvI 63 (298)
T TIGR00872 1 MQLGLIG-LGRMGANIVRRLAKRGH-----DCVG----YDHDQDAVKAMKED---RT-TG---VANLRELSQRLSAPRVV 63 (298)
T ss_pred CEEEEEc-chHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHc---CC-cc---cCCHHHHHhhcCCCCEE
Confidence 5899999 59999999999998764 3544 46666665544321 11 00 00001122355789999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+++. |. ..+.++.+.+.....++.+||..+|.
T Consensus 64 i~~v--p~--------------~~~~~v~~~l~~~l~~g~ivid~st~ 95 (298)
T TIGR00872 64 WVMV--PH--------------GIVDAVLEELAPTLEKGDIVIDGGNS 95 (298)
T ss_pred EEEc--Cc--------------hHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 9873 21 13444444555544456788888775
No 126
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.43 E-value=0.011 Score=57.96 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=52.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
..||.|+|| |.+|.++++.|+..++- .|.+ +|++.+++++.+.++.+.. +. ..+....+.++.++++|+
T Consensus 127 ~k~vlIlGa-GGaaraia~aL~~~G~~----~I~I----~nR~~~ka~~la~~l~~~~-~~-~~~~~~~~~~~~~~~aDi 195 (284)
T PRK12549 127 LERVVQLGA-GGAGAAVAHALLTLGVE----RLTI----FDVDPARAAALADELNARF-PA-ARATAGSDLAAALAAADG 195 (284)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCCC----EEEE----ECCCHHHHHHHHHHHHhhC-CC-eEEEeccchHhhhCCCCE
Confidence 468999995 99999999999987752 3555 5788888888888876533 21 122212233567889999
Q ss_pred EEEe
Q 015501 176 ALLI 179 (405)
Q Consensus 176 VIi~ 179 (405)
||.+
T Consensus 196 VIna 199 (284)
T PRK12549 196 LVHA 199 (284)
T ss_pred EEEC
Confidence 9986
No 127
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.42 E-value=0.0087 Score=52.03 Aligned_cols=75 Identities=23% Similarity=0.149 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+..++.|+|| |.+|..+++.|...+. ..|.+ .+++.++++..+..+... ...+.-..+..+.+.++|
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~----~~i~i----~nRt~~ra~~l~~~~~~~----~~~~~~~~~~~~~~~~~D 77 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGA----KEITI----VNRTPERAEALAEEFGGV----NIEAIPLEDLEEALQEAD 77 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTS----SEEEE----EESSHHHHHHHHHHHTGC----SEEEEEGGGHCHHHHTES
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCC----CEEEE----EECCHHHHHHHHHHcCcc----ccceeeHHHHHHHHhhCC
Confidence 3579999995 9999999999999876 23655 678888888777665211 111222344556788999
Q ss_pred EEEEeCCc
Q 015501 175 WALLIGAK 182 (405)
Q Consensus 175 iVIi~~g~ 182 (405)
+||.+-+.
T Consensus 78 ivI~aT~~ 85 (135)
T PF01488_consen 78 IVINATPS 85 (135)
T ss_dssp EEEE-SST
T ss_pred eEEEecCC
Confidence 99987543
No 128
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=96.40 E-value=0.031 Score=55.16 Aligned_cols=117 Identities=16% Similarity=0.121 Sum_probs=61.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccc-cchhhhHHHHHHHhhhhcCCCcceEEEec--CcccccC--
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS-ERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFE-- 171 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~-d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~eal~-- 171 (405)
|||.|+||+|++|++++..|+..+. .+.+ ++. ............++.+.. .......++. ...++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dl~d~~~~~~~~~~~ 72 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH-----DVVI--LDNLCNSKRSVLPVIERLGGKH-PTFVEGDIRNEALLTEILHDH 72 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC-----eEEE--EecCCCchHhHHHHHHHhcCCC-ceEEEccCCCHHHHHHHHhcC
Confidence 5899999999999999999998764 2433 111 111111101111111100 0000111110 0112333
Q ss_pred CCcEEEEeCCcCCC-C-CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 172 DAEWALLIGAKPRG-P-GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 172 dADiVIi~~g~~~k-~-g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++|+||..++.... + .....+.+..|+.....+.+.+++. .-..+|.++.
T Consensus 73 ~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~Ss 124 (338)
T PRK10675 73 AIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA--NVKNLIFSSS 124 (338)
T ss_pred CCCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEecc
Confidence 58999988764321 1 1223456788888888898888875 2234555554
No 129
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.39 E-value=0.011 Score=57.71 Aligned_cols=63 Identities=10% Similarity=0.157 Sum_probs=43.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVI 177 (405)
||+||| .|.+|..++..|+..+. +|.+ +|++.++++... +.. .....+..+++++||+||
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~~~G~-----~V~~----~dr~~~~~~~~~----~~g------~~~~~~~~~~~~~aDivi 60 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLAKAGY-----QLHV----TTIGPEVADELL----AAG------AVTAETARQVTEQADVIF 60 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHHHCCC-----eEEE----EcCCHHHHHHHH----HCC------CcccCCHHHHHhcCCEEE
Confidence 699999 59999999999998764 3544 466666554322 111 112245668899999999
Q ss_pred EeC
Q 015501 178 LIG 180 (405)
Q Consensus 178 i~~ 180 (405)
++.
T Consensus 61 ~~v 63 (291)
T TIGR01505 61 TMV 63 (291)
T ss_pred Eec
Confidence 873
No 130
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.38 E-value=0.021 Score=54.93 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=45.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| +|.+|..++..|...+.-. ..+.+ .+++.++++..+..+ + .+.+..+..+.+++||+|
T Consensus 1 m~IgiIG-~G~mG~aia~~L~~~g~~~--~~i~v----~~r~~~~~~~l~~~~-----~---~~~~~~~~~~~~~~aDvV 65 (258)
T PRK06476 1 MKIGFIG-TGAITEAMVTGLLTSPADV--SEIIV----SPRNAQIAARLAERF-----P---KVRIAKDNQAVVDRSDVV 65 (258)
T ss_pred CeEEEEC-cCHHHHHHHHHHHhCCCCh--heEEE----ECCCHHHHHHHHHHc-----C---CceEeCCHHHHHHhCCEE
Confidence 4899999 5999999999999876411 12333 456666654333221 1 133445566678899999
Q ss_pred EEeC
Q 015501 177 LLIG 180 (405)
Q Consensus 177 Ii~~ 180 (405)
|++.
T Consensus 66 ilav 69 (258)
T PRK06476 66 FLAV 69 (258)
T ss_pred EEEe
Confidence 9874
No 131
>PLN02214 cinnamoyl-CoA reductase
Probab=96.35 E-value=0.018 Score=57.57 Aligned_cols=110 Identities=12% Similarity=0.066 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHH-HHHHhhhhcCCCcceEEEe-------cCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-VAMELEDSLFPLLREVKIG-------INP 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g-~a~DL~d~~~~~~~~v~i~-------~~~ 166 (405)
++++|.|+||+|++|++++..|+..|. .|.. ..++.+.... ...++... ..++.+. ...
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~d~~~~ 75 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY-----TVKG----TVRNPDDPKNTHLRELEGG----KERLILCKADLQDYEAL 75 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC-----EEEE----EeCCchhhhHHHHHHhhCC----CCcEEEEecCcCChHHH
Confidence 357899999999999999999998774 2433 1222222111 11112111 0112111 122
Q ss_pred ccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
.++++++|+||.+++... .+..+.+..|+.-...+.+.+.+. +.. .+|.++
T Consensus 76 ~~~~~~~d~Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~-~v~-r~V~~S 126 (342)
T PLN02214 76 KAAIDGCDGVFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEA-KVK-RVVITS 126 (342)
T ss_pred HHHHhcCCEEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhc-CCC-EEEEec
Confidence 456789999999877431 223455677888888888888775 232 455444
No 132
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=96.34 E-value=0.021 Score=56.16 Aligned_cols=117 Identities=14% Similarity=0.022 Sum_probs=64.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-----e--cCcc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-----G--INPY 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-----~--~~~~ 167 (405)
+.++|.|+||+|+||++++..|+..|. .+.+.. ++.+.+... ..+.... ....++.+ + ....
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~-----~V~~~~----r~~~~~~~~-~~~~~~~-~~~~~~~~~~~D~~d~~~~~ 72 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGY-----TINATV----RDPKDRKKT-DHLLALD-GAKERLKLFKADLLDEGSFE 72 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-----EEEEEE----cCCcchhhH-HHHHhcc-CCCCceEEEeCCCCCchHHH
Confidence 457999999999999999999998764 243321 222222211 1111100 00011211 1 1123
Q ss_pred cccCCCcEEEEeCCcCCCC-CC-chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 ELFEDAEWALLIGAKPRGP-GM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~-g~-~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.+++.|+||.+++..... .. .-...+..|..-...+.+.+.+.. ..+.||+++-
T Consensus 73 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~-~~~~iv~~SS 129 (325)
T PLN02989 73 LAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVS-SVKRVILTSS 129 (325)
T ss_pred HHHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcC-CceEEEEecc
Confidence 4567899999987743211 11 123456778887888888777652 2345665553
No 133
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.32 E-value=0.017 Score=53.09 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=58.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHH---HHH---HHhhhhcCCCcceEEEecCccccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE---GVA---MELEDSLFPLLREVKIGINPYELF 170 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~---g~a---~DL~d~~~~~~~~v~i~~~~~eal 170 (405)
|||+||||+|.+|+.++.....+|. ++.- +-+|..++. ++. .|+.|. +...+++
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH-----eVTA----ivRn~~K~~~~~~~~i~q~Difd~-----------~~~a~~l 60 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH-----EVTA----IVRNASKLAARQGVTILQKDIFDL-----------TSLASDL 60 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC-----eeEE----EEeChHhccccccceeecccccCh-----------hhhHhhh
Confidence 7999999999999999999999886 2322 234444432 111 111111 1234789
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++-|+||-+-+... ++.+ ..-.+....+...++.. -...+++++-
T Consensus 61 ~g~DaVIsA~~~~~-~~~~-----~~~~k~~~~li~~l~~a--gv~RllVVGG 105 (211)
T COG2910 61 AGHDAVISAFGAGA-SDND-----ELHSKSIEALIEALKGA--GVPRLLVVGG 105 (211)
T ss_pred cCCceEEEeccCCC-CChh-----HHHHHHHHHHHHHHhhc--CCeeEEEEcC
Confidence 99999998754321 2211 11123355555666663 3567777774
No 134
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.32 E-value=0.014 Score=58.71 Aligned_cols=98 Identities=24% Similarity=0.331 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
+.++|.|+||+|.||+.++..|+.. +.. .+.+ ++++.++++..+.++.+.. + .+..+++.++
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~----~lil----v~R~~~rl~~La~el~~~~--------i-~~l~~~l~~a 216 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGVA----ELLL----VARQQERLQELQAELGGGK--------I-LSLEEALPEA 216 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCCC----EEEE----EcCCHHHHHHHHHHhcccc--------H-HhHHHHHccC
Confidence 3479999999899999999999853 321 2443 5666677776665553211 1 1345889999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (405)
|+|+.+++.+...-.+..++ .+..+++-++-|=|+-
T Consensus 217 DiVv~~ts~~~~~~I~~~~l-------------------~~~~~viDiAvPRDVd 252 (340)
T PRK14982 217 DIVVWVASMPKGVEIDPETL-------------------KKPCLMIDGGYPKNLD 252 (340)
T ss_pred CEEEECCcCCcCCcCCHHHh-------------------CCCeEEEEecCCCCCC
Confidence 99998877653111121111 2557888888887654
No 135
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.29 E-value=0.047 Score=55.30 Aligned_cols=68 Identities=16% Similarity=0.282 Sum_probs=41.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
.||+||| .|.||.+++..|...+. ++.+ ++.|.+...+. .+. . . ... -...++..+++++||+|
T Consensus 1 ~~I~iIG-~GliG~siA~~L~~~G~-----~v~i--~~~~~~~~~~~-~a~--~--~-~~~--~~~~~~~~~~~~~aDlV 64 (359)
T PRK06545 1 RTVLIVG-LGLIGGSLALAIKAAGP-----DVFI--IGYDPSAAQLA-RAL--G--F-GVI--DELAADLQRAAAEADLI 64 (359)
T ss_pred CeEEEEE-eCHHHHHHHHHHHhcCC-----CeEE--EEeCCCHHHHH-HHh--c--C-CCC--cccccCHHHHhcCCCEE
Confidence 4799999 59999999999998775 2443 33444322211 111 1 0 111 11234456788999999
Q ss_pred EEeC
Q 015501 177 LLIG 180 (405)
Q Consensus 177 Ii~~ 180 (405)
|++.
T Consensus 65 ilav 68 (359)
T PRK06545 65 VLAV 68 (359)
T ss_pred EEeC
Confidence 9973
No 136
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.28 E-value=0.013 Score=57.63 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=44.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||+||| .|.+|..++..|+..+. .+.+ +|++.++++.... .. .....+..+++++||+
T Consensus 1 m~~Ig~IG-lG~mG~~mA~~l~~~G~-----~V~v----~d~~~~~~~~~~~----~g------~~~~~s~~~~~~~aDv 60 (296)
T PRK15461 1 MAAIAFIG-LGQMGSPMASNLLKQGH-----QLQV----FDVNPQAVDALVD----KG------ATPAASPAQAAAGAEF 60 (296)
T ss_pred CCeEEEEe-eCHHHHHHHHHHHHCCC-----eEEE----EcCCHHHHHHHHH----cC------CcccCCHHHHHhcCCE
Confidence 46999999 59999999999998764 2443 4666566543321 11 1233456678899999
Q ss_pred EEEe
Q 015501 176 ALLI 179 (405)
Q Consensus 176 VIi~ 179 (405)
||++
T Consensus 61 Vi~~ 64 (296)
T PRK15461 61 VITM 64 (296)
T ss_pred EEEe
Confidence 9987
No 137
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.26 E-value=0.035 Score=54.33 Aligned_cols=65 Identities=11% Similarity=0.199 Sum_probs=43.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
++||+||| .|.+|..++..|+..+. ++.+ .|++.++.+... .. .+....+..+.+++||+
T Consensus 2 ~~~IgviG-~G~mG~~~a~~l~~~g~-----~v~~----~d~~~~~~~~~~----~~------g~~~~~~~~e~~~~~d~ 61 (296)
T PRK11559 2 TMKVGFIG-LGIMGKPMSKNLLKAGY-----SLVV----YDRNPEAVAEVI----AA------GAETASTAKAVAEQCDV 61 (296)
T ss_pred CceEEEEc-cCHHHHHHHHHHHHCCC-----eEEE----EcCCHHHHHHHH----HC------CCeecCCHHHHHhcCCE
Confidence 36899999 59999999999998664 2433 466655544222 11 12233455677899999
Q ss_pred EEEeC
Q 015501 176 ALLIG 180 (405)
Q Consensus 176 VIi~~ 180 (405)
||++.
T Consensus 62 vi~~v 66 (296)
T PRK11559 62 IITML 66 (296)
T ss_pred EEEeC
Confidence 99873
No 138
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=96.26 E-value=0.011 Score=64.53 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=65.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceE---EEecC---
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREV---KIGIN--- 165 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v---~i~~~--- 165 (405)
.++++||.|+||+|+||++++..|+.. +. .|.. +++...... ++... +. .++ .++..
T Consensus 312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-----~V~~----l~r~~~~~~----~~~~~--~~-~~~~~gDl~d~~~~ 375 (660)
T PRK08125 312 AKRRTRVLILGVNGFIGNHLTERLLRDDNY-----EVYG----LDIGSDAIS----RFLGH--PR-FHFVEGDISIHSEW 375 (660)
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHhCCCc-----EEEE----EeCCchhhh----hhcCC--Cc-eEEEeccccCcHHH
Confidence 355789999999999999999999974 33 2322 233222111 11100 00 011 11111
Q ss_pred cccccCCCcEEEEeCCcCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 166 PYELFEDAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~--k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
..++++++|+||.+++... .......+....|+.....+.+++.+. + ..+|.++.
T Consensus 376 l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~-~--~~~V~~SS 432 (660)
T PRK08125 376 IEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKY-N--KRIIFPST 432 (660)
T ss_pred HHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhc-C--CeEEEEcc
Confidence 1346789999998776432 122234456778888888888888885 3 35555554
No 139
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.20 E-value=0.023 Score=56.38 Aligned_cols=103 Identities=20% Similarity=0.245 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
..++|+|||+ |.+|..++..|...+. ..|.+ .+++.++++..+.++.. .+....+.++.+.++|
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~----~~V~v----~~r~~~ra~~la~~~g~-------~~~~~~~~~~~l~~aD 240 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGV----AEITI----ANRTYERAEELAKELGG-------NAVPLDELLELLNEAD 240 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCC----CEEEE----EeCCHHHHHHHHHHcCC-------eEEeHHHHHHHHhcCC
Confidence 4689999995 9999999999987543 13544 56776766656654321 1211234567789999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (405)
+||.+.+.+. + ..++... ++.......+++-+++|-|+=
T Consensus 241 vVi~at~~~~-~-----------~~~~~~~---~~~~~~~~~~viDlavPrdi~ 279 (311)
T cd05213 241 VVISATGAPH-Y-----------AKIVERA---MKKRSGKPRLIVDLAVPRDIE 279 (311)
T ss_pred EEEECCCCCc-h-----------HHHHHHH---HhhCCCCCeEEEEeCCCCCCc
Confidence 9998755432 1 1122222 122111456899999998743
No 140
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.14 E-value=0.015 Score=57.81 Aligned_cols=114 Identities=20% Similarity=0.200 Sum_probs=67.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+|+|| |.||+.++..|.+.+ - .+.+.. -++..+++...-..+.+.. ...........+.+....+|+|
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g-~----~V~~~~--R~~~~~~l~~~GL~i~~~~-~~~~~~~~~~~~~~~~~~~Dlv 71 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAG-H----DVTLLV--RSRRLEALKKKGLRIEDEG-GNFTTPVVAATDAEALGPADLV 71 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCC-C----eEEEEe--cHHHHHHHHhCCeEEecCC-CccccccccccChhhcCCCCEE
Confidence 69999995 999999999999987 2 143311 1211122222222222222 1001122334566778899999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHC
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA 236 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s 236 (405)
|++... --..+..+.+..+.+++.+|+..=|=....- .+.+..
T Consensus 72 iv~vKa----------------~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~~ 114 (307)
T COG1893 72 IVTVKA----------------YQLEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRKIL 114 (307)
T ss_pred EEEecc----------------ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHHhC
Confidence 997431 1234555666777777889998989877665 454443
No 141
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=96.12 E-value=0.067 Score=53.47 Aligned_cols=113 Identities=12% Similarity=0.020 Sum_probs=60.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC------ccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------PYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~------~~e 168 (405)
.+||.|+||+|+||++++..|++.|. .+.+ .+++.+.......++.. ..++.+. .| ..+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~ 75 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGY-----TVHA----TLRDPAKSLHLLSKWKE-----GDRLRLFRADLQEEGSFDE 75 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHhhcc-----CCeEEEEECCCCCHHHHHH
Confidence 56999999999999999999998764 2433 22332322222222211 1122221 11 234
Q ss_pred ccCCCcEEEEeCCcCCCC---C-Cchh-----hhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 LFEDAEWALLIGAKPRGP---G-MERA-----GLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~---g-~~r~-----~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++++.|.||.+++..... . .+-. ..++.|+.-...+.+.+.+.. .-.++|.++-
T Consensus 76 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~-~~~~~v~~SS 138 (353)
T PLN02896 76 AVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK-TVKRVVFTSS 138 (353)
T ss_pred HHcCCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcC-CccEEEEEec
Confidence 567899999987653211 1 1111 223333455666667666541 1235665553
No 142
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.12 E-value=0.04 Score=54.54 Aligned_cols=125 Identities=16% Similarity=0.124 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH--hhhhcCCCcceEEEecCcccccCCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--LEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D--L~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
.|||+|+|| |.||..++..|...|. ++.+ +++..+.++....+ +.-........+.+.....+.....
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~-----~V~l----v~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~ 71 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL-----PVRL----ILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPI 71 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC-----CeEE----EEechHHHHHHhhcCCeEEeeCCcceeeccCCCCccccccc
Confidence 369999995 9999999999998763 3665 44543444322211 1000000000111112222345688
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecch
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR 249 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~ 249 (405)
|+||++... .+ ..+..+.+..+.++++.|+.+-|=++..-.+. +..+ +.++++..+.
T Consensus 72 D~viv~vK~---------------~~-~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~-~~~~--~~~v~~g~~~ 128 (305)
T PRK05708 72 HRLLLACKA---------------YD-AEPAVASLAHRLAPGAELLLLQNGLGSQDAVA-ARVP--HARCIFASST 128 (305)
T ss_pred CEEEEECCH---------------Hh-HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHH-HhCC--CCcEEEEEee
Confidence 999987431 11 22334455555567888999999877554433 3322 1356655443
No 143
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=96.11 E-value=0.01 Score=56.93 Aligned_cols=96 Identities=18% Similarity=0.194 Sum_probs=58.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEEE
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALL 178 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVIi 178 (405)
|.|+||+|++|++++..|+..+. .|.. .+++.+.......+ .. . .. ......++++++|+||.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~~~---~~-~---~~-~~~~~~~~~~~~D~Vvh 63 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH-----EVTI----LTRSPPAGANTKWE---GY-K---PW-APLAESEALEGADAVIN 63 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC-----EEEE----EeCCCCCCCcccce---ee-e---cc-cccchhhhcCCCCEEEE
Confidence 57999999999999999998764 2433 23332322111000 00 0 00 01234578889999999
Q ss_pred eCCcCCCCC--C--chhhhHHhhHHHHHHHHHHHHhh
Q 015501 179 IGAKPRGPG--M--ERAGLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 179 ~~g~~~k~g--~--~r~~ll~~N~~i~~~i~~~i~~~ 211 (405)
+++.+...+ . ....+...|+.....+.+.+.+.
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~ 100 (292)
T TIGR01777 64 LAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAA 100 (292)
T ss_pred CCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 887543222 1 22345667888889999988886
No 144
>PLN02583 cinnamoyl-CoA reductase
Probab=96.09 E-value=0.036 Score=54.21 Aligned_cols=119 Identities=12% Similarity=0.043 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcc--eEEEe--cCcccccC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR--EVKIG--INPYELFE 171 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~--~v~i~--~~~~eal~ 171 (405)
.++|.|+||+|+||++++..|+..|. .+.+ +..+.....+.....++.... .... ...++ ....++++
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~-----~V~~--~~R~~~~~~~~~~~~~l~~~~-~~~~~~~~Dl~d~~~~~~~l~ 77 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY-----TVHA--AVQKNGETEIEKEIRGLSCEE-ERLKVFDVDPLDYHSILDALK 77 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-----EEEE--EEcCchhhhHHHHHHhcccCC-CceEEEEecCCCHHHHHHHHc
Confidence 45899999999999999999998875 2433 111111122222222221100 0000 01111 11246788
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++|.|+...+.+........+.+..|..-...+.+.+.+.. .-..||+++-
T Consensus 78 ~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~-~v~riV~~SS 128 (297)
T PLN02583 78 GCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTD-TIEKVVFTSS 128 (297)
T ss_pred CCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcC-CccEEEEecc
Confidence 99998865432211111123467788888888888877652 1235555543
No 145
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.08 E-value=0.011 Score=57.62 Aligned_cols=111 Identities=13% Similarity=0.074 Sum_probs=63.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe--cCcccccCCCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~eal~dAD 174 (405)
|||.|+||+|.+|++++..|+..+. .+.. ++++.+... ++.+..... ....++ ....++++++|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~----~~~~~~~~~-~~~D~~~~~~l~~~~~~~d 66 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE-----EVRV----LVRPTSDRR----NLEGLDVEI-VEGDLRDPASLRKAVAGCR 66 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC-----EEEE----EEecCcccc----ccccCCceE-EEeeCCCHHHHHHHHhCCC
Confidence 4899999999999999999998764 2433 233333221 111100000 011111 11245677899
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+||..++.......+.......|+.....+++.+.+.. -..+|.++.
T Consensus 67 ~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~SS 113 (328)
T TIGR03466 67 ALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAG--VERVVYTSS 113 (328)
T ss_pred EEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEec
Confidence 99987654222223344566778888888888877642 235555554
No 146
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.07 E-value=0.047 Score=53.00 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=39.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| .|.+|..++..|...+.. ..+.. +|++.+.++. +.++ .. +....+ .+++.+||+|
T Consensus 1 m~I~iIG-~G~mG~sla~~l~~~g~~---~~v~~----~d~~~~~~~~-~~~~-----g~---~~~~~~-~~~~~~aD~V 62 (275)
T PRK08507 1 MKIGIIG-LGLMGGSLGLALKEKGLI---SKVYG----YDHNELHLKK-ALEL-----GL---VDEIVS-FEELKKCDVI 62 (275)
T ss_pred CEEEEEc-cCHHHHHHHHHHHhcCCC---CEEEE----EcCCHHHHHH-HHHC-----CC---CcccCC-HHHHhcCCEE
Confidence 4899999 599999999999987751 12332 4565555442 2221 11 111122 3334569999
Q ss_pred EEeC
Q 015501 177 LLIG 180 (405)
Q Consensus 177 Ii~~ 180 (405)
|++.
T Consensus 63 ilav 66 (275)
T PRK08507 63 FLAI 66 (275)
T ss_pred EEeC
Confidence 9873
No 147
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.07 E-value=0.035 Score=55.84 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=43.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
.+|+||+|+||+|.+|..++..|.+.+.- ...|..+-..... |.-+.+.. ....+...+.++++++
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP----~~~l~~v~s~~~a----G~~l~~~~------~~l~~~~~~~~~~~~v 67 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDFP----VGTLHLLASSESA----GHSVPFAG------KNLRVREVDSFDFSQV 67 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCCC----ceEEEEEECcccC----CCeeccCC------cceEEeeCChHHhcCC
Confidence 46789999999999999999999965431 1344333222211 21111111 1334433333457899
Q ss_pred cEEEEeCC
Q 015501 174 EWALLIGA 181 (405)
Q Consensus 174 DiVIi~~g 181 (405)
|+|+++.+
T Consensus 68 D~vFla~p 75 (336)
T PRK05671 68 QLAFFAAG 75 (336)
T ss_pred CEEEEcCC
Confidence 99998643
No 148
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.05 E-value=0.038 Score=54.34 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=45.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
+||++|| .|.+|+.+|..|+..|+ ++.+ .|++.++.... +.... ........|+.++||+|
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~-----~v~v----~~r~~~ka~~~---~~~~G------a~~a~s~~eaa~~aDvV 61 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGH-----EVTV----YNRTPEKAAEL---LAAAG------ATVAASPAEAAAEADVV 61 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCC-----EEEE----EeCChhhhhHH---HHHcC------CcccCCHHHHHHhCCEE
Confidence 5899999 79999999999999885 3444 56665653222 22211 12334567999999999
Q ss_pred EEeC
Q 015501 177 LLIG 180 (405)
Q Consensus 177 Ii~~ 180 (405)
|.+-
T Consensus 62 itmv 65 (286)
T COG2084 62 ITML 65 (286)
T ss_pred EEec
Confidence 9873
No 149
>PLN02240 UDP-glucose 4-epimerase
Probab=96.04 E-value=0.083 Score=52.43 Aligned_cols=118 Identities=13% Similarity=0.086 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-c--Ccc----
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I--NPY---- 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~--~~~---- 167 (405)
..+||.|+||+|++|++++..|+..+. .|.+ .++...........+.+.......++... . .+.
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-----~V~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~ 74 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAGY-----KVVV----IDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALE 74 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHH
Confidence 357999999999999999999998763 2432 22211111100111111100000111111 1 112
Q ss_pred cccC--CCcEEEEeCCcCC-CCC-CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 ELFE--DAEWALLIGAKPR-GPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 eal~--dADiVIi~~g~~~-k~g-~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.++ ++|+||.+++... ... ......+..|......+++.+.+. +. ..+|.++.
T Consensus 75 ~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~~v~~Ss 132 (352)
T PLN02240 75 KVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKH-GC-KKLVFSSS 132 (352)
T ss_pred HHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHc-CC-CEEEEEcc
Confidence 2232 6899999876532 111 123456778888888888887764 22 34565554
No 150
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=96.00 E-value=0.022 Score=56.87 Aligned_cols=117 Identities=13% Similarity=0.005 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc-ceEEEec--CcccccC-
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--NPYELFE- 171 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~~--~~~eal~- 171 (405)
.++|.|+||+|++|++++..|++.|. .|.. .+++..........+.... ... ....++. +..+.++
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~ 73 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA-----EVYG----YSLDPPTSPNLFELLNLAK-KIEDHFGDIRDAAKLRKAIAE 73 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC-----EEEE----EeCCCccchhHHHHHhhcC-CceEEEccCCCHHHHHHHHhh
Confidence 47899999999999999999998764 2432 2333222211111111000 000 0011110 1123333
Q ss_pred -CCcEEEEeCCcCCC--CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 172 -DAEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 172 -dADiVIi~~g~~~k--~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.|+||.+++.+.. ...+-...+..|......+.+.+.+. +....+|.++.
T Consensus 74 ~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~-~~~~~iv~~SS 127 (349)
T TIGR02622 74 FKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAI-GSVKAVVNVTS 127 (349)
T ss_pred cCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhc-CCCCEEEEEec
Confidence 35999988774321 11123345677888888888887764 22346666664
No 151
>PLN02256 arogenate dehydrogenase
Probab=95.99 E-value=0.083 Score=52.43 Aligned_cols=92 Identities=18% Similarity=0.163 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccccc-CCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal-~dA 173 (405)
+++||+||| .|.+|..++..|...+. .+.. +|++.. ...+.++ . +....+..+.+ .++
T Consensus 35 ~~~kI~IIG-~G~mG~slA~~L~~~G~-----~V~~----~d~~~~--~~~a~~~-----g----v~~~~~~~e~~~~~a 93 (304)
T PLN02256 35 RKLKIGIVG-FGNFGQFLAKTFVKQGH-----TVLA----TSRSDY--SDIAAEL-----G----VSFFRDPDDFCEEHP 93 (304)
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhCCC-----EEEE----EECccH--HHHHHHc-----C----CeeeCCHHHHhhCCC
Confidence 457999999 59999999999987652 2433 344422 1222221 1 11233444444 479
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHH-HhhcCCCeEEEEeCC
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKAL-NAVASRNVKVIVVGN 223 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i-~~~a~p~a~vIvvtN 223 (405)
|+||++... ..+.++.+.+ ..+.+++++|+.++.
T Consensus 94 DvVilavp~----------------~~~~~vl~~l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 94 DVVLLCTSI----------------LSTEAVLRSLPLQRLKRSTLFVDVLS 128 (304)
T ss_pred CEEEEecCH----------------HHHHHHHHhhhhhccCCCCEEEecCC
Confidence 999997431 2334444444 222346777777776
No 152
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=95.98 E-value=0.1 Score=51.32 Aligned_cols=113 Identities=14% Similarity=0.050 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-c------Cccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I------NPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~------~~~e 168 (405)
.++|.|+||+|+||++++..|+..|. .|.+. .++....+. ...+.... ....++.+. . ...+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~-~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~ 73 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY-----TVKAT----VRDLTDRKK-TEHLLALD-GAKERLKLFKADLLEESSFEQ 73 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----ECCCcchHH-HHHHHhcc-CCCCceEEEecCCCCcchHHH
Confidence 46999999999999999999998764 24321 112121111 11111100 001112221 1 1234
Q ss_pred ccCCCcEEEEeCCcCCCCCC--chhhhHHhhHHHHHHHHHHHHhhcCCC-eEEEEeC
Q 015501 169 LFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAVASRN-VKVIVVG 222 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~--~r~~ll~~N~~i~~~i~~~i~~~a~p~-a~vIvvt 222 (405)
+++++|+||.+++... +.. ...+++..|+.....+.+.+.+. ++ ..||.++
T Consensus 74 ~~~~~d~vih~A~~~~-~~~~~~~~~~~~~nv~gt~~ll~~~~~~--~~v~rvV~~S 127 (322)
T PLN02986 74 AIEGCDAVFHTASPVF-FTVKDPQTELIDPALKGTINVLNTCKET--PSVKRVILTS 127 (322)
T ss_pred HHhCCCEEEEeCCCcC-CCCCCchhhhhHHHHHHHHHHHHHHHhc--CCccEEEEec
Confidence 5778999999876421 111 12235667877777888777664 22 2455554
No 153
>PRK06194 hypothetical protein; Provisional
Probab=95.98 E-value=0.081 Score=50.90 Aligned_cols=46 Identities=22% Similarity=0.133 Sum_probs=33.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+++|.|+||+|.||++++..|+..|. .+.+ .+++.+.++....++.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 51 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM-----KLVL----ADVQQDALDRAVAELR 51 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHHHH
Confidence 46899999999999999999998775 2443 3555556665555554
No 154
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.97 E-value=0.04 Score=58.39 Aligned_cols=126 Identities=20% Similarity=0.145 Sum_probs=83.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc------ceEEEecCcc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL------REVKIGINPY 167 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~------~~v~i~~~~~ 167 (405)
-+-++|-|+||+|++|+.+...++..+. .+|.+ .++++.++....++|.+.. +.. ++|.-..-..
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~~p----~~i~l----~~~~E~~~~~i~~el~~~~-~~~~~~~~igdVrD~~~~~ 318 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKFNP----KEIIL----FSRDEYKLYLIDMELREKF-PELKLRFYIGDVRDRDRVE 318 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhcCC----CEEEE----ecCchHHHHHHHHHHHhhC-CCcceEEEecccccHHHHH
Confidence 3457999999999999999999998753 23443 4666667776777776642 211 1222112235
Q ss_pred cccCC--CcEEEEeCCcCCCCCCchh--hhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC----CchhHHH
Q 015501 168 ELFED--AEWALLIGAKPRGPGMERA--GLLDINGQIFAEQGKALNAVASRNVKVIVVG----NPCNTNA 229 (405)
Q Consensus 168 eal~d--ADiVIi~~g~~~k~g~~r~--~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt----NP~d~~t 229 (405)
+++++ .|+|+.+|..-.-|-+|.. .-..-|+-=-..++++..+. +=+..|++-| ||.|+|.
T Consensus 319 ~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~-~V~~~V~iSTDKAV~PtNvmG 387 (588)
T COG1086 319 RAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKN-GVKKFVLISTDKAVNPTNVMG 387 (588)
T ss_pred HHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHh-CCCEEEEEecCcccCCchHhh
Confidence 68888 9999998876555655433 44566777777888877775 3455566555 7777664
No 155
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.96 E-value=0.023 Score=55.95 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=53.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC---C
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED---A 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d---A 173 (405)
|||+||| .|.+|..++..|...+. +|.+ .|++.++++... +. . .....+..+.+++ +
T Consensus 1 m~Ig~IG-lG~mG~~mA~~L~~~g~-----~v~v----~dr~~~~~~~~~----~~--g----~~~~~s~~~~~~~~~~a 60 (299)
T PRK12490 1 MKLGLIG-LGKMGGNMAERLREDGH-----EVVG----YDVNQEAVDVAG----KL--G----ITARHSLEELVSKLEAP 60 (299)
T ss_pred CEEEEEc-ccHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHHH----HC--C----CeecCCHHHHHHhCCCC
Confidence 4899999 59999999999998764 2443 466666554322 11 1 2233344455544 6
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|+||++... -+.++++...+.....++.+||..++
T Consensus 61 dvVi~~vp~---------------~~~~~~v~~~i~~~l~~g~ivid~st 95 (299)
T PRK12490 61 RTIWVMVPA---------------GEVTESVIKDLYPLLSPGDIVVDGGN 95 (299)
T ss_pred CEEEEEecC---------------chHHHHHHHHHhccCCCCCEEEECCC
Confidence 899887321 12333333344433335667777754
No 156
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.96 E-value=0.083 Score=49.38 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.+.....++.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~ 52 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA-----TVAF----NDGLAAEARELAAALE 52 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 47899999999999999999998764 2443 3555565555555554
No 157
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=95.93 E-value=0.049 Score=55.29 Aligned_cols=72 Identities=10% Similarity=0.115 Sum_probs=43.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-CcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~~eal~dADi 175 (405)
+||+|+||+|.||+.+...|....-|.. ..+.++...+. .|....+. .....+.. .+.+++++.|+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~---~~~~~~ss~~s----~g~~~~f~------~~~~~v~~~~~~~~~~~vDi 67 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDA---IRPVFFSTSQL----GQAAPSFG------GTTGTLQDAFDIDALKALDI 67 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCcc---ccEEEEEchhh----CCCcCCCC------CCcceEEcCcccccccCCCE
Confidence 4899999999999999998884444432 34444433222 12211111 11223332 23358999999
Q ss_pred EEEeCC
Q 015501 176 ALLIGA 181 (405)
Q Consensus 176 VIi~~g 181 (405)
|++++|
T Consensus 68 vffa~g 73 (366)
T TIGR01745 68 IITCQG 73 (366)
T ss_pred EEEcCC
Confidence 999765
No 158
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=95.91 E-value=0.058 Score=52.60 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=59.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhH-HHHHHHhhhhcCCCcceEEEecC-ccc-----ccC
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL-EGVAMELEDSLFPLLREVKIGIN-PYE-----LFE 171 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l-~g~a~DL~d~~~~~~~~v~i~~~-~~e-----al~ 171 (405)
|.|+||+|+||++++..|+..|. ..+.+ ++........ .-...|+.|.. .. .+ ..+ .+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~----~~v~~--~~~~~~~~~~~~~~~~~~~d~~-~~-------~~~~~~~~~~~~~~ 67 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI----TDILV--VDNLKDGTKFVNLVDLDIADYM-DK-------EDFLAQIMAGDDFG 67 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC----ceEEE--ecCCCcchHHHhhhhhhhhhhh-hH-------HHHHHHHhcccccC
Confidence 68999999999999999998764 12332 2211111110 00112222211 00 00 111 224
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++|+||.+++.+.....+.......|......+.+.+.+.. ..+|..+-
T Consensus 68 ~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~---~~~i~~SS 116 (308)
T PRK11150 68 DIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE---IPFLYASS 116 (308)
T ss_pred CccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcC---CcEEEEcc
Confidence 78999998764332222333466778888888888887742 35555543
No 159
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.90 E-value=0.027 Score=55.57 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=40.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC---CC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---DA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~---dA 173 (405)
|||+||| .|.+|+.++..|+..+. ++.+ .|+++++++... +. . +....+..+.++ ++
T Consensus 1 m~Ig~IG-lG~MG~~mA~~L~~~g~-----~v~v----~dr~~~~~~~~~----~~--g----~~~~~~~~e~~~~~~~~ 60 (301)
T PRK09599 1 MQLGMIG-LGRMGGNMARRLLRGGH-----EVVG----YDRNPEAVEALA----EE--G----ATGADSLEELVAKLPAP 60 (301)
T ss_pred CEEEEEc-ccHHHHHHHHHHHHCCC-----eEEE----EECCHHHHHHHH----HC--C----CeecCCHHHHHhhcCCC
Confidence 4899999 59999999999998764 3544 466666554332 11 1 123333334444 46
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+||++
T Consensus 61 dvvi~~ 66 (301)
T PRK09599 61 RVVWLM 66 (301)
T ss_pred CEEEEE
Confidence 998886
No 160
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.88 E-value=0.054 Score=55.10 Aligned_cols=73 Identities=12% Similarity=0.212 Sum_probs=41.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dAD 174 (405)
|++|+|+||+|.+|..+...|+...-|.. ..+.++.... ..+...++.+ ....+. ..+.++++++|
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~---~~l~~~ss~~----sg~~~~~f~g------~~~~v~~~~~~~~~~~~D 67 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDL---IEPVFFSTSQ----AGGAAPSFGG------KEGTLQDAFDIDALKKLD 67 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCc---CcEEEecchh----hCCcccccCC------CcceEEecCChhHhcCCC
Confidence 57999999999999999986666555432 1232332221 1111111111 111222 23356789999
Q ss_pred EEEEeCC
Q 015501 175 WALLIGA 181 (405)
Q Consensus 175 iVIi~~g 181 (405)
+|+++++
T Consensus 68 ivf~a~~ 74 (369)
T PRK06598 68 IIITCQG 74 (369)
T ss_pred EEEECCC
Confidence 9999754
No 161
>PRK07102 short chain dehydrogenase; Provisional
Probab=95.87 E-value=0.098 Score=49.04 Aligned_cols=46 Identities=30% Similarity=0.361 Sum_probs=33.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
|++|.|+||+|.+|.+++..|++.|. .+.+ .+++.+.++....++.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~~~ 46 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA-----RLYL----AARDVERLERLADDLR 46 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 56899999999999999999998774 2443 3555555554544443
No 162
>PRK08267 short chain dehydrogenase; Provisional
Probab=95.86 E-value=0.028 Score=53.33 Aligned_cols=117 Identities=18% Similarity=0.094 Sum_probs=61.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--Ccccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYEL---- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~ea---- 169 (405)
|+++.|+||+|.+|..++..|++.|. .+.+ .+++.+.++....++.... .......++. +..+.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~v~~~~~~~ 70 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGW-----RVGA----YDINEAGLAALAAELGAGN-AWTGALDVTDRAAWDAALADF 70 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHhcCCc-eEEEEecCCCHHHHHHHHHHH
Confidence 46799999999999999999998774 2443 3555555554444332111 0001112211 01111
Q ss_pred ----cCCCcEEEEeCCcCCCCCC---c---hhhhHHhhHHHHHHH----HHHHHhhcCCCeEEEEeCCc
Q 015501 170 ----FEDAEWALLIGAKPRGPGM---E---RAGLLDINGQIFAEQ----GKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 ----l~dADiVIi~~g~~~k~g~---~---r~~ll~~N~~i~~~i----~~~i~~~a~p~a~vIvvtNP 224 (405)
....|+||.++|....... + -...+..|..-...+ .+.+++. +.+.+++++-.
T Consensus 71 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~isS~ 137 (260)
T PRK08267 71 AAATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKAT--PGARVINTSSA 137 (260)
T ss_pred HHHcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCCEEEEeCch
Confidence 2356999998875432111 1 122345555533333 3334432 45667666643
No 163
>PRK07806 short chain dehydrogenase; Provisional
Probab=95.83 E-value=0.086 Score=49.45 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~ 31 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA 31 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC
Confidence 36899999999999999999998764
No 164
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.81 E-value=0.069 Score=50.39 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-EecC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (405)
.+++.|+||+|.+|++++..|++.|. .+.+ .+++.+.++....++.+.. .++. +..| +.+
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~ 73 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA-----AVAI----ADLNQDGANAVADEINKAG----GKAIGVAMDVTNEDAVNA 73 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----eEEE----EeCChHHHHHHHHHHHhcC----ceEEEEECCCCCHHHHHH
Confidence 46899999999999999999998775 2444 3555555554444444321 1121 1111 111
Q ss_pred -------ccCCCcEEEEeCCcCC-CC-----CCchhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 -------LFEDAEWALLIGAKPR-GP-----GMERAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 -------al~dADiVIi~~g~~~-k~-----g~~r~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+...|+||.+++... .+ ..+-...+..|..- .+.+.+.+.+.. ..+.|++++-
T Consensus 74 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~~~~iv~~ss 144 (262)
T PRK13394 74 GIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDD-RGGVVIYMGS 144 (262)
T ss_pred HHHHHHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc-CCcEEEEEcc
Confidence 1234799998876531 11 01112234445443 555566663322 4566666663
No 165
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.81 E-value=0.042 Score=55.51 Aligned_cols=73 Identities=22% Similarity=0.316 Sum_probs=44.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
..+||+|+||+|.+|..++..|...+.- .+.|..+...++..+ ..+.. . .++.+..-+.+++.++|
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP----~~~l~~las~rsaGk----~~~~~----~--~~~~v~~~~~~~~~~~D 71 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFP----YSSLKMLASARSAGK----KVTFE----G--RDYTVEELTEDSFDGVD 71 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCC----cceEEEEEccCCCCC----eeeec----C--ceeEEEeCCHHHHcCCC
Confidence 4689999999999999999888875431 133433333333221 11111 1 23344333456789999
Q ss_pred EEEEeCC
Q 015501 175 WALLIGA 181 (405)
Q Consensus 175 iVIi~~g 181 (405)
+||++.+
T Consensus 72 ~vf~a~p 78 (344)
T PLN02383 72 IALFSAG 78 (344)
T ss_pred EEEECCC
Confidence 9999754
No 166
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.79 E-value=0.052 Score=54.82 Aligned_cols=75 Identities=24% Similarity=0.336 Sum_probs=46.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
.+.+||+|+||+|.+|..++..|.....|.- -.|.++..+++.. ....+. . .++.+..-+.++++++
T Consensus 3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v---~~l~~~aS~~saG----k~~~~~----~--~~l~v~~~~~~~~~~~ 69 (347)
T PRK06728 3 EKGYHVAVVGATGAVGQKIIELLEKETKFNI---AEVTLLSSKRSAG----KTVQFK----G--REIIIQEAKINSFEGV 69 (347)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCc---ccEEEEECcccCC----CCeeeC----C--cceEEEeCCHHHhcCC
Confidence 3457999999999999999998886555431 1244444443222 211111 1 1345544456678999
Q ss_pred cEEEEeCC
Q 015501 174 EWALLIGA 181 (405)
Q Consensus 174 DiVIi~~g 181 (405)
|+|+++.+
T Consensus 70 Divf~a~~ 77 (347)
T PRK06728 70 DIAFFSAG 77 (347)
T ss_pred CEEEECCC
Confidence 99999753
No 167
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.77 E-value=0.028 Score=54.37 Aligned_cols=100 Identities=22% Similarity=0.199 Sum_probs=58.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC-cEE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA-EWA 176 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA-DiV 176 (405)
+|.|+||+|+||++++..|++.|. ++.. +++......... .+.. -....++-.....+.+++. |.|
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~---~~~~-~~~~d~~~~~~~~~~~~~~~d~v 68 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH-----DVRG----LDRLRDGLDPLL---SGVE-FVVLDLTDRDLVDELAKGVPDAV 68 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC-----eEEE----EeCCCccccccc---cccc-eeeecccchHHHHHHHhcCCCEE
Confidence 499999999999999999998754 2332 233222211110 0000 0000000001223455556 999
Q ss_pred EEeCCcCCCCCCch---hhhHHhhHHHHHHHHHHHHh
Q 015501 177 LLIGAKPRGPGMER---AGLLDINGQIFAEQGKALNA 210 (405)
Q Consensus 177 Ii~~g~~~k~g~~r---~~ll~~N~~i~~~i~~~i~~ 210 (405)
|.+++....++..+ .+....|..-.+.+.+++.+
T Consensus 69 ih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~ 105 (314)
T COG0451 69 IHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARA 105 (314)
T ss_pred EEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 98877544333322 24778999999999998888
No 168
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.75 E-value=0.043 Score=51.76 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=30.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHH
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV 145 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~ 145 (405)
|+|.|+||+|.+|.+++..|+..|. .+.+ .+++.++++..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~ 40 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH-----KVIA----TGRRQERLQEL 40 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHH
Confidence 5899999999999999999998764 2443 45555555443
No 169
>PLN02712 arogenate dehydrogenase
Probab=95.71 E-value=0.12 Score=56.66 Aligned_cols=93 Identities=23% Similarity=0.182 Sum_probs=53.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccccc-CC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-ED 172 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal-~d 172 (405)
.+++||+||| .|.+|..++..|...|. .|.. +|++.... .+.++ . +....+..+.+ ++
T Consensus 50 ~~~~kIgIIG-~G~mG~slA~~L~~~G~-----~V~~----~dr~~~~~--~A~~~-----G----v~~~~d~~e~~~~~ 108 (667)
T PLN02712 50 TTQLKIAIIG-FGNYGQFLAKTLISQGH-----TVLA----HSRSDHSL--AARSL-----G----VSFFLDPHDLCERH 108 (667)
T ss_pred CCCCEEEEEc-cCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHH--HHHHc-----C----CEEeCCHHHHhhcC
Confidence 3467999999 59999999999998763 2433 34442221 22221 1 22233444434 57
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHH-hhcCCCeEEEEeCC
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALN-AVASRNVKVIVVGN 223 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~-~~a~p~a~vIvvtN 223 (405)
||+||++.. ...+.++.+.+. .+.+++++|+.++.
T Consensus 109 aDvViLavP----------------~~~~~~vl~~l~~~~l~~g~iVvDv~S 144 (667)
T PLN02712 109 PDVILLCTS----------------IISTENVLKSLPLQRLKRNTLFVDVLS 144 (667)
T ss_pred CCEEEEcCC----------------HHHHHHHHHhhhhhcCCCCeEEEECCC
Confidence 999999732 123344444443 23346778877764
No 170
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=95.69 E-value=0.027 Score=55.21 Aligned_cols=99 Identities=16% Similarity=0.056 Sum_probs=57.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--CCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dAD 174 (405)
|||.|+||+|+||++++..|+..+- +.. .++.... ...|+.|.. ...+.++ ++|
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g~------V~~----~~~~~~~---~~~Dl~d~~-----------~~~~~~~~~~~D 56 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLGN------LIA----LDVHSTD---YCGDFSNPE-----------GVAETVRKIRPD 56 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccCC------EEE----ecccccc---ccCCCCCHH-----------HHHHHHHhcCCC
Confidence 5899999999999999999987651 321 2221110 111222211 1123344 589
Q ss_pred EEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 175 iVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+||.+++..... ..+.......|+.....+++.+++. + .++|.+|
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~-g--~~~v~~S 103 (299)
T PRK09987 57 VIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEV-G--AWVVHYS 103 (299)
T ss_pred EEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEc
Confidence 999887643211 1122233467888888899888875 2 3555544
No 171
>PRK12746 short chain dehydrogenase; Provisional
Probab=95.68 E-value=0.19 Score=47.26 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++|.|+||+|.+|++++..|++.|.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~ 31 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGA 31 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 6899999999999999999998764
No 172
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=95.67 E-value=0.067 Score=51.93 Aligned_cols=70 Identities=23% Similarity=0.369 Sum_probs=43.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||+|||+ |.+|..++..|...+. + .++. .+ +|++.++++..+.++ ......+..+.+.++|+
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~-~--~elv-~v--~d~~~~~a~~~a~~~---------~~~~~~~~~ell~~~Dv 64 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRI-N--AELY-AF--YDRNLEKAENLASKT---------GAKACLSIDELVEDVDL 64 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCC-C--eEEE-EE--ECCCHHHHHHHHHhc---------CCeeECCHHHHhcCCCE
Confidence 579999995 9999999999887541 1 1121 12 466655554333211 12234455555689999
Q ss_pred EEEeCC
Q 015501 176 ALLIGA 181 (405)
Q Consensus 176 VIi~~g 181 (405)
|+++..
T Consensus 65 Vvi~a~ 70 (265)
T PRK13304 65 VVECAS 70 (265)
T ss_pred EEEcCC
Confidence 999854
No 173
>PLN02572 UDP-sulfoquinovose synthase
Probab=95.67 E-value=0.043 Score=57.17 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+++||.|+||+|+||++++..|+..|.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~ 72 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRGY 72 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 467899999999999999999998764
No 174
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.63 E-value=0.058 Score=47.10 Aligned_cols=121 Identities=17% Similarity=0.158 Sum_probs=67.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc-ceE--EEecCcc-cccCCCc
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REV--KIGINPY-ELFEDAE 174 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~-~~v--~i~~~~~-eal~dAD 174 (405)
|+|+|| |.||..+|..|.+.+. ++.+ +.+.. .++....+=........ ..+ ......+ +....+|
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~-----~V~l----~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 69 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH-----DVTL----VSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYD 69 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC-----EEEE----EESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTES
T ss_pred CEEECc-CHHHHHHHHHHHHCCC-----ceEE----EEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCc
Confidence 789995 9999999999998654 4555 34443 33332211000000110 011 1112222 5778999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecch
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR 249 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~ 249 (405)
+||++... .-..+..+.++.+..+++.|+.+-|=.+..-.+. +..+ +.++++..+.
T Consensus 70 ~viv~vKa----------------~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~-~~~~--~~~v~~g~~~ 125 (151)
T PF02558_consen 70 LVIVAVKA----------------YQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLA-EYFP--RPRVLGGVTT 125 (151)
T ss_dssp EEEE-SSG----------------GGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHH-CHST--GSGEEEEEEE
T ss_pred EEEEEecc----------------cchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHH-HHcC--CCcEEEEEEe
Confidence 99998432 1123455557777778889999999776653333 3332 2366555443
No 175
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.63 E-value=0.037 Score=47.43 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=43.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+|+|++|.+|+.++..+....-+ ++.-. +++...... -.|+.+...-....+.++.+..+.+..+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~----~lv~~---v~~~~~~~~--g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGF----ELVGA---VDRKPSAKV--GKDVGELAGIGPLGVPVTDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTE----EEEEE---EETTTSTTT--TSBCHHHCTSST-SSBEBS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCc----EEEEE---EecCCcccc--cchhhhhhCcCCcccccchhHHHhcccCCEE
Confidence 69999997799999999999984321 23221 344431111 1333332211122455667778888899998
Q ss_pred EEe
Q 015501 177 LLI 179 (405)
Q Consensus 177 Ii~ 179 (405)
|-.
T Consensus 72 IDf 74 (124)
T PF01113_consen 72 IDF 74 (124)
T ss_dssp EEE
T ss_pred EEc
Confidence 854
No 176
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.63 E-value=0.025 Score=56.05 Aligned_cols=104 Identities=20% Similarity=0.180 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHH---HhhhhcCCC-cceEEEecCccccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM---ELEDSLFPL-LREVKIGINPYELF 170 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~---DL~d~~~~~-~~~v~i~~~~~eal 170 (405)
.+|||+|+|+ |.||..++..|...+. ++.+. .++. .+.... .+....... ...+.+.+ ..++.
T Consensus 4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~-----~V~~~----~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~ 70 (313)
T PRK06249 4 ETPRIGIIGT-GAIGGFYGAMLARAGF-----DVHFL----LRSD--YEAVRENGLQVDSVHGDFHLPPVQAYR-SAEDM 70 (313)
T ss_pred cCcEEEEECC-CHHHHHHHHHHHHCCC-----eEEEE----EeCC--HHHHHhCCeEEEeCCCCeeecCceEEc-chhhc
Confidence 4579999995 9999999999998663 35542 2321 121111 010000000 01122222 33467
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH
Q 015501 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (405)
..+|+||++..... ..+..+.+....++++.|+...|=.+.
T Consensus 71 ~~~D~vilavK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~~ 111 (313)
T PRK06249 71 PPCDWVLVGLKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLGV 111 (313)
T ss_pred CCCCEEEEEecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCCc
Confidence 78999998743210 122333344434578888888887754
No 177
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.62 E-value=0.15 Score=47.65 Aligned_cols=47 Identities=26% Similarity=0.284 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+.++|.|+||+|.+|.+++..|++.|. .+.+ .+++.+.++....++.
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 50 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA-----RVVV----TDRNEEAAERVAAEIL 50 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHh
Confidence 346999999999999999999998764 2443 4566555554444443
No 178
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.62 E-value=0.084 Score=51.77 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=80.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecC---c-----
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---P----- 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~---~----- 166 (405)
..+.|.|+||++.||.++|+.|+..|.- +.+ .-+..++++.++.++.... +.. ++.+... +
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~-----l~l----var~~rrl~~v~~~l~~~~-~~~-~v~~~~~Dvs~~~~~~ 79 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAK-----LVL----VARRARRLERVAEELRKLG-SLE-KVLVLQLDVSDEESVK 79 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCc-----eEE----eehhhhhHHHHHHHHHHhC-CcC-ccEEEeCccCCHHHHH
Confidence 3578999999999999999999998862 333 4456677887777777665 222 2222211 1
Q ss_pred ------ccccCCCcEEEEeCCcCCCCCC-c------hhhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 015501 167 ------YELFEDAEWALLIGAKPRGPGM-E------RAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (405)
Q Consensus 167 ------~eal~dADiVIi~~g~~~k~g~-~------r~~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (405)
..-+.+.|+.|..||..+ .+. + ....++-| +-+-+...+.|++. .+|.|++++....-+
T Consensus 80 ~~~~~~~~~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r--~~GhIVvisSiaG~~ 155 (282)
T KOG1205|consen 80 KFVEWAIRHFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKR--NDGHIVVISSIAGKM 155 (282)
T ss_pred HHHHHHHHhcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhc--CCCeEEEEecccccc
Confidence 145678999999998776 332 1 22244444 55667777888875 279999988776544
No 179
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=95.62 E-value=0.058 Score=54.29 Aligned_cols=73 Identities=25% Similarity=0.232 Sum_probs=43.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+.+||+|+||+|.+|..++..|.+...- ...|..+..+.+..+. ..+. . .++.+...+..++.++|
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP----~~~l~~laS~~saG~~----~~~~----~--~~~~v~~~~~~~~~~~D 68 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFP----VGELYALASEESAGET----LRFG----G--KSVTVQDAAEFDWSQAQ 68 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCC----ceEEEEEEccCcCCce----EEEC----C--cceEEEeCchhhccCCC
Confidence 4579999999999999999988875331 1344444344322211 1111 1 13444433345568999
Q ss_pred EEEEeCC
Q 015501 175 WALLIGA 181 (405)
Q Consensus 175 iVIi~~g 181 (405)
+|+++.+
T Consensus 69 vvf~a~p 75 (336)
T PRK08040 69 LAFFVAG 75 (336)
T ss_pred EEEECCC
Confidence 9999653
No 180
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=95.60 E-value=0.18 Score=47.14 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=32.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.+|++++..|++.+. .+.+ .+++.+.+.....++.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~ 48 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA-----KVAV----FDLNREAAEKVAADIR 48 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----ecCCHHHHHHHHHHHH
Confidence 46899999999999999999998764 2444 3455455544444443
No 181
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=95.58 E-value=0.19 Score=51.39 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++||.|+||+|+||++++..|+..+.
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~ 85 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY 85 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 3467999999999999999999998764
No 182
>PRK06196 oxidoreductase; Provisional
Probab=95.57 E-value=0.073 Score=52.41 Aligned_cols=114 Identities=10% Similarity=0.017 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--C-------c
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N-------P 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~-------~ 166 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.++++....++.... . ....++. . .
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~-----~Vv~----~~R~~~~~~~~~~~l~~v~-~--~~~Dl~d~~~v~~~~~~~ 93 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA-----HVIV----PARRPDVAREALAGIDGVE-V--VMLDLADLESVRAFAERF 93 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhhhCe-E--EEccCCCHHHHHHHHHHH
Confidence 46899999999999999999998774 2444 3555555554444432211 0 0111110 0 0
Q ss_pred ccccCCCcEEEEeCCcCCCCCC---ch-hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 YELFEDAEWALLIGAKPRGPGM---ER-AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~g~---~r-~~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+.+...|++|..+|....+.. +. ...+..|. .+.+.+.+.+++. ..+.||+++-
T Consensus 94 ~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~--~~~~iV~vSS 156 (315)
T PRK06196 94 LDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAG--AGARVVALSS 156 (315)
T ss_pred HhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCeEEEECC
Confidence 1123568999998875322211 11 12233443 3455566666653 3467777764
No 183
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.56 E-value=0.19 Score=46.66 Aligned_cols=46 Identities=24% Similarity=0.224 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.+|.+++..|+..+. .+.+ .+++.+++.....++.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l~ 51 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY-----KVAI----TARDQKELEEAAAELN 51 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-----EEEE----eeCCHHHHHHHHHHHh
Confidence 36899999999999999999998664 2433 3555555554444443
No 184
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.56 E-value=0.04 Score=47.61 Aligned_cols=76 Identities=22% Similarity=0.241 Sum_probs=46.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch-----------------hhhHHHHHHHhhhhcCCCcce
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-----------------LQALEGVAMELEDSLFPLLRE 159 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~-----------------~~~l~g~a~DL~d~~~~~~~~ 159 (405)
.||+|+|+ |.+|+.++..|+..|+ + .+.| +|.|.- ..+.+..+..|.... |.. +
T Consensus 3 ~~v~iiG~-G~vGs~va~~L~~~Gv-~---~i~l--vD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~n-p~~-~ 73 (135)
T PF00899_consen 3 KRVLIIGA-GGVGSEVAKNLARSGV-G---KITL--VDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEIN-PDV-E 73 (135)
T ss_dssp -EEEEEST-SHHHHHHHHHHHHHTT-S---EEEE--EESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHS-TTS-E
T ss_pred CEEEEECc-CHHHHHHHHHHHHhCC-C---ceee--cCCcceeecccccccccccccchhHHHHHHHHHHHHhc-Cce-e
Confidence 69999995 9999999999999887 2 2443 333332 224555555555443 322 3
Q ss_pred EEEecC------cccccCCCcEEEEeCC
Q 015501 160 VKIGIN------PYELFEDAEWALLIGA 181 (405)
Q Consensus 160 v~i~~~------~~eal~dADiVIi~~g 181 (405)
++.... ..+.++++|+||.+..
T Consensus 74 v~~~~~~~~~~~~~~~~~~~d~vi~~~d 101 (135)
T PF00899_consen 74 VEAIPEKIDEENIEELLKDYDIVIDCVD 101 (135)
T ss_dssp EEEEESHCSHHHHHHHHHTSSEEEEESS
T ss_pred eeeeecccccccccccccCCCEEEEecC
Confidence 333222 2256679999988743
No 185
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=95.54 E-value=0.087 Score=52.60 Aligned_cols=131 Identities=14% Similarity=0.190 Sum_probs=77.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhccc-CCC-CCceEEEeccccchh--hhHHHHHHHhhhhc-C----CCcceEEEec
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV-LGP-DQPIALKLLGSERSL--QALEGVAMELEDSL-F----PLLREVKIGI 164 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~-~~~-d~~i~L~l~~~d~~~--~~l~g~a~DL~d~~-~----~~~~~v~i~~ 164 (405)
+.+.||+||| +|+=|++++..+...=. +.. +..+....++...+. ++|..+...=.+.. | .+..++...+
T Consensus 19 ~~~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711|consen 19 RDPLKVCIVG-SGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred cCceEEEEEc-cChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence 4578999999 59999999987775421 111 234666555444333 23322211111111 0 1224688888
Q ss_pred CcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--------c-hhHHHHHHHHH
Q 015501 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--------P-CNTNALICLKN 235 (405)
Q Consensus 165 ~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN--------P-~d~~t~~~~k~ 235 (405)
|..++++|||++|+. .| -+.+.++++.|..+-.|++..|-.+- | ...++.++.+.
T Consensus 98 dl~ea~~dADilvf~--vP--------------hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~ 161 (372)
T KOG2711|consen 98 DLVEAAKDADILVFV--VP--------------HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRA 161 (372)
T ss_pred hHHHHhccCCEEEEe--CC--------------hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHH
Confidence 999999999999987 44 26667777777777666665554432 2 34555555555
Q ss_pred CCCCCCC
Q 015501 236 APSIPAK 242 (405)
Q Consensus 236 s~~~~~k 242 (405)
. ++|..
T Consensus 162 l-gI~~~ 167 (372)
T KOG2711|consen 162 L-GIPCS 167 (372)
T ss_pred h-CCCce
Confidence 4 45444
No 186
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.52 E-value=0.17 Score=47.54 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=33.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ ++++.+.++....++.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~ 49 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA-----KVVI----ADLNDEAAAAAAEALQ 49 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHH
Confidence 46899999999999999999998764 2443 4566566665555553
No 187
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.50 E-value=0.065 Score=53.78 Aligned_cols=90 Identities=13% Similarity=0.107 Sum_probs=53.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|.||..+|..|...|. .|.. +|++.+... +. .....+..+.+++||+
T Consensus 146 g~~VgIIG-~G~IG~~vA~~L~~~G~-----~V~~----~d~~~~~~~----~~----------~~~~~~l~ell~~aDi 201 (330)
T PRK12480 146 NMTVAIIG-TGRIGAATAKIYAGFGA-----TITA----YDAYPNKDL----DF----------LTYKDSVKEAIKDADI 201 (330)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC-----EEEE----EeCChhHhh----hh----------hhccCCHHHHHhcCCE
Confidence 36899999 59999999999987554 2433 354433211 00 0122356788999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++.. |..+ .+..++. .+.+.. .++++++|+++-
T Consensus 202 Vil~l--P~t~---------~t~~li~--~~~l~~-mk~gavlIN~aR 235 (330)
T PRK12480 202 ISLHV--PANK---------ESYHLFD--KAMFDH-VKKGAILVNAAR 235 (330)
T ss_pred EEEeC--CCcH---------HHHHHHh--HHHHhc-CCCCcEEEEcCC
Confidence 99873 2211 1222221 123333 357889999984
No 188
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=95.50 E-value=0.099 Score=49.48 Aligned_cols=97 Identities=18% Similarity=0.233 Sum_probs=64.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
+||+|||+ |.||..++-.+-.+.. + .++.+ . +|++.+++..... .. .... .++..+.+.+.|++
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~-~--~e~v~-v--~D~~~ek~~~~~~----~~---~~~~--~s~ide~~~~~Dlv 64 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRV-D--FELVA-V--YDRDEEKAKELEA----SV---GRRC--VSDIDELIAEVDLV 64 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCc-c--eeEEE-E--ecCCHHHHHHHHh----hc---CCCc--cccHHHHhhcccee
Confidence 58999995 9999999887776542 1 12322 1 5666666543322 11 1111 14556666999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
+-+++ .+.+++++.++-+. +.+.+|+-++-=+|
T Consensus 65 VEaAS----------------~~Av~e~~~~~L~~-g~d~iV~SVGALad 97 (255)
T COG1712 65 VEAAS----------------PEAVREYVPKILKA-GIDVIVMSVGALAD 97 (255)
T ss_pred eeeCC----------------HHHHHHHhHHHHhc-CCCEEEEechhccC
Confidence 99877 47889999877775 48899888886554
No 189
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.49 E-value=0.034 Score=52.88 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+++||.|+||+|.+|+.++..|+..+.
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~ 42 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF 42 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC
Confidence 468999999999999999999998764
No 190
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=95.48 E-value=0.047 Score=55.71 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++||+||||.|.+|..++..|...|.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~ 123 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY 123 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC
Confidence 358999999679999999999998764
No 191
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=95.47 E-value=0.29 Score=46.29 Aligned_cols=118 Identities=14% Similarity=0.063 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccccc-----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF----- 170 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal----- 170 (405)
.++|.|+||+|.+|++++..|+..|. .+.+ .+++.+.++....++.... ....-+.....+.+.+
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~i~~~~-~~~~~~~~Dl~d~~~i~~~~~ 81 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA-----RVVL----SARKAEELEEAAAHLEALG-IDALWIAADVADEADIERLAE 81 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHH
Confidence 47899999999999999999998764 2433 3455555554444333211 0000011111122222
Q ss_pred ------CCCcEEEEeCCcCCCCCC------chhhhHHhhHHHHHHHHHHHHhh---cCCCeEEEEeCC
Q 015501 171 ------EDAEWALLIGAKPRGPGM------ERAGLLDINGQIFAEQGKALNAV---ASRNVKVIVVGN 223 (405)
Q Consensus 171 ------~dADiVIi~~g~~~k~g~------~r~~ll~~N~~i~~~i~~~i~~~---a~p~a~vIvvtN 223 (405)
...|.||..+|....... .-...+..|..-...+.+.+.++ .++.+.+++++.
T Consensus 82 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS 149 (259)
T PRK08213 82 ETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS 149 (259)
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 467999998765321111 11123456655555555544332 123467777765
No 192
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=95.45 E-value=0.045 Score=57.85 Aligned_cols=102 Identities=15% Similarity=0.181 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--- 171 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--- 171 (405)
.+.+|++|| .|.+|+.++..|+..|. ++.+ .|++.++.+..+..... . . ...+....+..+.++
T Consensus 5 ~~~~IG~IG-LG~MG~~mA~nL~~~G~-----~V~V----~NRt~~k~~~l~~~~~~-~-G-a~~~~~a~s~~e~v~~l~ 71 (493)
T PLN02350 5 ALSRIGLAG-LAVMGQNLALNIAEKGF-----PISV----YNRTTSKVDETVERAKK-E-G-NLPLYGFKDPEDFVLSIQ 71 (493)
T ss_pred CCCCEEEEe-eHHHHHHHHHHHHhCCC-----eEEE----ECCCHHHHHHHHHhhhh-c-C-CcccccCCCHHHHHhcCC
Confidence 467899999 79999999999999875 3554 56776666544321111 0 0 011222233444444
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+|+||++-.. .+.+.++...+-....++.++|..||-
T Consensus 72 ~~dvIi~~v~~---------------~~aV~~Vi~gl~~~l~~G~iiID~sT~ 109 (493)
T PLN02350 72 KPRSVIILVKA---------------GAPVDQTIKALSEYMEPGDCIIDGGNE 109 (493)
T ss_pred CCCEEEEECCC---------------cHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 49999987321 233344433344433467788888873
No 193
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=95.43 E-value=0.043 Score=52.76 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=57.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC--CcE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--AEW 175 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d--ADi 175 (405)
||.|+||+|++|++++..|+..|. ++.+ +++. ..|+.+.. ...+++++ .|+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-----~v~~----~~r~-------~~d~~~~~-----------~~~~~~~~~~~d~ 53 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-----VVVA----LTSS-------QLDLTDPE-----------ALERLLRAIRPDA 53 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-----EEEE----eCCc-------ccCCCCHH-----------HHHHHHHhCCCCE
Confidence 689999999999999999998753 2332 2221 11222111 11233343 499
Q ss_pred EEEeCCcCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 176 ALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 176 VIi~~g~~~k~g--~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
||.+++...... .........|......+++.+.+. + ..+|.++
T Consensus 54 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~--~~~v~~S 99 (287)
T TIGR01214 54 VVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARH-G--ARLVHIS 99 (287)
T ss_pred EEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEe
Confidence 998876532211 123345677888888888888775 2 2555555
No 194
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.42 E-value=0.065 Score=49.16 Aligned_cols=74 Identities=19% Similarity=0.162 Sum_probs=48.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe--cC---ccccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--IN---PYELF 170 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~---~~eal 170 (405)
.+++.|+||+|.+|..++..|+..+. .+.+ .+++.++++..+.++.+.. .. .+... .+ ..+++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~-----~V~l----~~R~~~~~~~l~~~l~~~~-~~--~~~~~~~~~~~~~~~~~ 95 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGA-----RVVL----VGRDLERAQKAADSLRARF-GE--GVGAVETSDDAARAAAI 95 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHhhc-CC--cEEEeeCCCHHHHHHHH
Confidence 47999999889999999999987652 2444 4566677776665554221 11 22221 11 24778
Q ss_pred CCCcEEEEeCC
Q 015501 171 EDAEWALLIGA 181 (405)
Q Consensus 171 ~dADiVIi~~g 181 (405)
+++|+||.+..
T Consensus 96 ~~~diVi~at~ 106 (194)
T cd01078 96 KGADVVFAAGA 106 (194)
T ss_pred hcCCEEEECCC
Confidence 99999887643
No 195
>PRK06180 short chain dehydrogenase; Provisional
Probab=95.39 E-value=0.069 Score=51.40 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++|.|+||+|.||++++..|+..|.
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~ 29 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH 29 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC
Confidence 356899999999999999999998764
No 196
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.37 E-value=0.089 Score=52.83 Aligned_cols=72 Identities=28% Similarity=0.325 Sum_probs=42.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||+|+||+|.+|..++..|...+.- .+.|..+-.+... +...++. . .++.+......+++++|+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp----~~~l~~l~s~~~~----g~~l~~~----g--~~i~v~d~~~~~~~~vDv 66 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFP----VDKLRLLASARSA----GKELSFK----G--KELKVEDLTTFDFSGVDI 66 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCC----cceEEEEEccccC----CCeeeeC----C--ceeEEeeCCHHHHcCCCE
Confidence 579999999999999999999875431 1233332223221 1111111 1 233443223356789999
Q ss_pred EEEeCC
Q 015501 176 ALLIGA 181 (405)
Q Consensus 176 VIi~~g 181 (405)
||++.+
T Consensus 67 Vf~A~g 72 (334)
T PRK14874 67 ALFSAG 72 (334)
T ss_pred EEECCC
Confidence 998754
No 197
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.37 E-value=0.061 Score=47.00 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+.++|+|+|+ |.+|..++..|...+. ..+.+ .|++.++++..+.++.... ... ...+..+.++++|
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g~----~~v~v----~~r~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~D 83 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELGA----AKIVI----VNRTLEKAKALAERFGELG----IAI-AYLDLEELLAEAD 83 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC----CEEEE----EcCCHHHHHHHHHHHhhcc----cce-eecchhhccccCC
Confidence 3579999995 9999999999988652 12444 4666666665555443210 011 1234556689999
Q ss_pred EEEEeCC
Q 015501 175 WALLIGA 181 (405)
Q Consensus 175 iVIi~~g 181 (405)
+||.+..
T Consensus 84 vvi~~~~ 90 (155)
T cd01065 84 LIINTTP 90 (155)
T ss_pred EEEeCcC
Confidence 9998744
No 198
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.36 E-value=0.14 Score=56.70 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=56.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
.||+||| .|.+|..++..|...+.. ..|.. +|++.++++. +.++ .. ......+..+++.++|+|
T Consensus 4 ~~I~IIG-~G~mG~ala~~l~~~G~~---~~V~~----~d~~~~~~~~-a~~~-----g~--~~~~~~~~~~~~~~aDvV 67 (735)
T PRK14806 4 GRVVVIG-LGLIGGSFAKALRERGLA---REVVA----VDRRAKSLEL-AVSL-----GV--IDRGEEDLAEAVSGADVI 67 (735)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCC---CEEEE----EECChhHHHH-HHHC-----CC--CCcccCCHHHHhcCCCEE
Confidence 6899999 599999999999987741 12433 4666555442 2221 11 001223455678899999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
|++... +.+.++.+.+..+.+++.+|+.++
T Consensus 68 ilavp~----------------~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 68 VLAVPV----------------LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred EECCCH----------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 987431 234555555555544555655554
No 199
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=95.35 E-value=0.048 Score=52.75 Aligned_cols=117 Identities=17% Similarity=0.133 Sum_probs=60.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc-ceEEEec--CcccccCC--
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--NPYELFED-- 172 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~~--~~~eal~d-- 172 (405)
||.|+||+|++|++++..|+..+.- ..+.+ ++........+ ...++.... ... ....++. ...+++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~---~~v~~--~~~~~~~~~~~-~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~ 73 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPD---AEVIV--LDKLTYAGNLE-NLADLEDNP-RYRFVKGDIGDRELVSRLFTEHQ 73 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCC---CEEEE--ecCCCcchhhh-hhhhhccCC-CcEEEEcCCcCHHHHHHHHhhcC
Confidence 5899999999999999999876420 12322 22111001111 111121100 000 0001111 12344555
Q ss_pred CcEEEEeCCcCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 173 AEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 173 ADiVIi~~g~~~--k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+|+||.+++... .....-...+..|......+++.+.+.. .+..++.++
T Consensus 74 ~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~i~~S 124 (317)
T TIGR01181 74 PDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYW-HEFRFHHIS 124 (317)
T ss_pred CCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcC-CCceEEEee
Confidence 899998876421 1111223456778888888888888752 455666655
No 200
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=95.35 E-value=0.054 Score=54.22 Aligned_cols=74 Identities=22% Similarity=0.181 Sum_probs=52.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
+...+++||| +|.+|...+..+....-+ ..|.+ .|++.++++..+.++.+. ..++....+..+++++|
T Consensus 126 ~~~~~lgiiG-~G~qA~~~l~al~~~~~~---~~v~V----~~r~~~~~~~~~~~~~~~----g~~v~~~~~~~eav~~a 193 (325)
T TIGR02371 126 KDSSVLGIIG-AGRQAWTQLEALSRVFDL---EEVSV----YCRTPSTREKFALRASDY----EVPVRAATDPREAVEGC 193 (325)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhcCCC---CEEEE----ECCCHHHHHHHHHHHHhh----CCcEEEeCCHHHHhccC
Confidence 3468999999 599999877766553222 24554 577778888777766532 12456667888999999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+++
T Consensus 194 DiVita 199 (325)
T TIGR02371 194 DILVTT 199 (325)
T ss_pred CEEEEe
Confidence 999975
No 201
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=95.28 E-value=0.1 Score=49.97 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=77.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec---------Ccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NPY 167 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~---------~~~ 167 (405)
+-+.|.||++.+|...|..|++.|. ++.| ..+..++|+..+.++.+.. .+...+.++. ...
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~-----~vvl----~aRR~drL~~la~~~~~~~-~~~~~~DVtD~~~~~~~i~~~~ 76 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA-----KVVL----AARREERLEALADEIGAGA-ALALALDVTDRAAVEAAIEALP 76 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC-----eEEE----EeccHHHHHHHHHhhccCc-eEEEeeccCCHHHHHHHHHHHH
Confidence 5678999999999999999999886 3555 6888899999999887411 1111222321 134
Q ss_pred cccCCCcEEEEeCCcCCCCCC------chhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 ELFEDAEWALLIGAKPRGPGM------ERAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~g~------~r~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|.-+.... +-..+++.|+.- ++.+.+.+.+- ..|.||+++--
T Consensus 77 ~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r--~~G~IiN~~Si 141 (246)
T COG4221 77 EEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER--KSGHIINLGSI 141 (246)
T ss_pred HhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc--CCceEEEeccc
Confidence 677889999998875432111 122356777653 44555666663 46788888743
No 202
>PRK07814 short chain dehydrogenase; Provisional
Probab=95.27 E-value=0.18 Score=48.03 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=33.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~l~ 55 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGA-----DVLI----AARTESQLDEVAEQIR 55 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 46899999999999999999998775 2443 3555555555555553
No 203
>PRK05650 short chain dehydrogenase; Provisional
Probab=95.27 E-value=0.31 Score=46.48 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=32.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
++|.|+||+|.+|++++..|+..|. .+.+ .+++.+.++....++.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l~ 45 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW-----RLAL----ADVNEEGGEETLKLLR 45 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 4789999999999999999998775 2444 3455555555544443
No 204
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.21 E-value=0.021 Score=54.18 Aligned_cols=67 Identities=22% Similarity=0.289 Sum_probs=42.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC----ccc-cc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN----PYE-LF 170 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~----~~e-al 170 (405)
|+++|+|| |.+|+++|..|...|. .+.+ +|.++++++....|-.+. .+... .. ..+ .+
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~-----~Vv~----Id~d~~~~~~~~~~~~~~------~~v~gd~t~~~~L~~agi 64 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH-----NVVL----IDRDEERVEEFLADELDT------HVVIGDATDEDVLEEAGI 64 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC-----ceEE----EEcCHHHHHHHhhhhcce------EEEEecCCCHHHHHhcCC
Confidence 68999995 9999999999999875 3555 566667665433221111 12221 11 223 37
Q ss_pred CCCcEEEEe
Q 015501 171 EDAEWALLI 179 (405)
Q Consensus 171 ~dADiVIi~ 179 (405)
.++|.++.+
T Consensus 65 ~~aD~vva~ 73 (225)
T COG0569 65 DDADAVVAA 73 (225)
T ss_pred CcCCEEEEe
Confidence 889998875
No 205
>PRK08339 short chain dehydrogenase; Provisional
Probab=95.21 E-value=0.42 Score=45.69 Aligned_cols=115 Identities=10% Similarity=0.003 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc---ceEEEecCccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL---REVKIGINPYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~---~~v~i~~~~~e---- 168 (405)
.+.+.|+||+|.||.+++..|++.|. .+.+ .+++.+.++..+.++.... +.. ....++ +.+
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~--~~~~i~~ 75 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGA-----DVIL----LSRNEENLKKAREKIKSES-NVDVSYIVADLT--KREDLER 75 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhc-CCceEEEEecCC--CHHHHHH
Confidence 45789999999999999999999875 2444 3555566665555554321 110 011111 111
Q ss_pred ------ccCCCcEEEEeCCcCCCC---CCchhh---hHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 ------LFEDAEWALLIGAKPRGP---GMERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 ------al~dADiVIi~~g~~~k~---g~~r~~---ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|.+... ..+..+ .+..| ..+.+.+.+.+++. ..+.||+++-.
T Consensus 76 ~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~--~~g~Ii~isS~ 145 (263)
T PRK08339 76 TVKELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERK--GFGRIIYSTSV 145 (263)
T ss_pred HHHHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEcCc
Confidence 123579998887754311 112111 23334 33466666777663 45777777654
No 206
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.21 E-value=0.22 Score=46.62 Aligned_cols=45 Identities=24% Similarity=0.247 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.+++.|+||+|.+|.+++..|++.+. .+.+ .+++.+.++....++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~-----~vi~----~~r~~~~~~~~~~~~ 50 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA-----SVVV----ADINAEGAERVAKQI 50 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHH
Confidence 46899999999999999999998764 2443 355544444444334
No 207
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.20 E-value=0.046 Score=56.56 Aligned_cols=104 Identities=18% Similarity=0.176 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
..+|+|+|+ |.+|..++..|...|.. .+.+ .+++.++++..+.++.. ......+..+++.++|+
T Consensus 180 ~~~VlViGa-G~iG~~~a~~L~~~G~~----~V~v----~~rs~~ra~~la~~~g~-------~~i~~~~l~~~l~~aDv 243 (417)
T TIGR01035 180 GKKALLIGA-GEMGELVAKHLLRKGVG----KILI----ANRTYERAEDLAKELGG-------EAVKFEDLEEYLAEADI 243 (417)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCC----EEEE----EeCCHHHHHHHHHHcCC-------eEeeHHHHHHHHhhCCE
Confidence 479999995 99999999999887642 2544 56666666655544321 11111345678899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (405)
||.+.+.+. |-.+ .+.+ +.+..--....+++-+++|-|+=
T Consensus 244 Vi~aT~s~~-~ii~--------~e~l----~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 244 VISSTGAPH-PIVS--------KEDV----ERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred EEECCCCCC-ceEc--------HHHH----HHHHhcCCCCeEEEEeCCCCCCC
Confidence 998754332 1111 1112 11111101246899999997754
No 208
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.17 E-value=0.3 Score=45.54 Aligned_cols=47 Identities=32% Similarity=0.379 Sum_probs=33.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.+|+++.|+||+|.+|..++..|++.|. .|.+ .+++.+.++....++
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~ 50 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGW-----DLAL----VARSQDALEALAAEL 50 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHH
Confidence 3567899999999999999999998775 2443 355555544444333
No 209
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.17 E-value=0.3 Score=45.51 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||+|+|+ |.+|+.++..|+..|+
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gv 45 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGI 45 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999886
No 210
>PRK08265 short chain dehydrogenase; Provisional
Probab=95.17 E-value=0.06 Score=51.32 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=32.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME 148 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D 148 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~ 49 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA-----RVAI----VDIDADNGAAVAAS 49 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHH
Confidence 46899999999999999999998775 2444 35555555544433
No 211
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.13 E-value=0.27 Score=46.26 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+.++|.|+||+|.||.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 50 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-----DVVL----AARTAERLDEVAAEID 50 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 346899999999999999999998875 2443 3555555554444443
No 212
>PRK12937 short chain dehydrogenase; Provisional
Probab=95.09 E-value=0.22 Score=46.36 Aligned_cols=29 Identities=24% Similarity=0.117 Sum_probs=25.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.+.++|.|+||+|.+|++++..|+..|.
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~ 30 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGF 30 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 34457899999999999999999998875
No 213
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.07 E-value=0.08 Score=54.23 Aligned_cols=27 Identities=26% Similarity=0.169 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++||+|+||+|.+|..++..|...+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~ 63 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPD 63 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCC
Confidence 457999999999999999999888743
No 214
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.04 E-value=0.085 Score=52.85 Aligned_cols=73 Identities=22% Similarity=0.190 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~-~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
..++|+|||+ |..|...+..+.. .++ +.+.+ .+++.++++..+.++.+.. + .++....+..+++.+|
T Consensus 131 ~~~~v~IiGa-G~~a~~~~~al~~~~~~----~~V~v----~~R~~~~a~~l~~~~~~~~-g--~~v~~~~d~~~al~~a 198 (330)
T PRK08291 131 DASRAAVIGA-GEQARLQLEALTLVRPI----REVRV----WARDAAKAEAYAADLRAEL-G--IPVTVARDVHEAVAGA 198 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCC----CEEEE----EcCCHHHHHHHHHHHhhcc-C--ceEEEeCCHHHHHccC
Confidence 3579999995 9999988887775 332 23555 5778888888887765321 1 2344556667889999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+.+
T Consensus 199 DiVi~a 204 (330)
T PRK08291 199 DIIVTT 204 (330)
T ss_pred CEEEEe
Confidence 999875
No 215
>PRK07478 short chain dehydrogenase; Provisional
Probab=95.04 E-value=0.4 Score=45.15 Aligned_cols=113 Identities=18% Similarity=0.063 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--cc-----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY----- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~----- 167 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.+.. .++.+. .| +.
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 72 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA-----KVVV----GARRQAELDQLVAEIRAEG----GEAVALAGDVRDEAYAKA 72 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 46899999999999999999998775 2444 3555566665555554321 111111 11 11
Q ss_pred ------cccCCCcEEEEeCCcC--CCCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 ------ELFEDAEWALLIGAKP--RGPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 ------eal~dADiVIi~~g~~--~k~g--~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.+...|++|..+|.. ..+- .+. ...+..|.. ..+.+.+.+.+. ..+.||+++.
T Consensus 73 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~--~~~~iv~~sS 143 (254)
T PRK07478 73 LVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR--GGGSLIFTST 143 (254)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 1233679999887752 1221 111 123455543 344455555553 3566776664
No 216
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.02 E-value=0.39 Score=45.87 Aligned_cols=114 Identities=15% Similarity=-0.004 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec---------Cc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~---------~~ 166 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.++++....++.... .....++. ..
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~---~~~~D~~~~~~~~~~~~~~ 72 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA-----RVAI----GDLDEALAKETAAELGLVV---GGPLDVTDPASFAAFLDAV 72 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhccce---EEEccCCCHHHHHHHHHHH
Confidence 46899999999999999999998764 2443 3556566654444332111 00111110 01
Q ss_pred ccccCCCcEEEEeCCcCCC-CCC--c---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 YELFEDAEWALLIGAKPRG-PGM--E---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k-~g~--~---r~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+.+.+.|++|..+|.... +-. + -...+..|.. +.+.+.+.+.+. ..+.|++++-
T Consensus 73 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~--~~g~iv~isS 137 (273)
T PRK07825 73 EADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR--GRGHVVNVAS 137 (273)
T ss_pred HHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEEEcC
Confidence 1223578999998775321 111 1 1123445543 344455555553 4567777774
No 217
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.01 E-value=0.16 Score=47.12 Aligned_cols=46 Identities=26% Similarity=0.327 Sum_probs=33.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+++|.|+||+|.+|..++..|++.|. .+.+ ++++.+.++....++.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~ 50 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA-----KVVI----YDSNEEAAEALAAELR 50 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCChhHHHHHHHHHH
Confidence 46899999999999999999998765 2433 4555555554444443
No 218
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=94.98 E-value=0.068 Score=53.43 Aligned_cols=73 Identities=25% Similarity=0.263 Sum_probs=44.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--CcccccCCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFEDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~eal~dA 173 (405)
++||+|+||+|.||+.++..|.+... .- ..+.++-+.++..+ ...++..-. +.+-. .+..+++++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f-~~---~~~~~~AS~rSaG~---~~~~f~~~~------~~v~~~~~~~~~~~~~ 67 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHF-PF---EELVLLASARSAGK---KYIEFGGKS------IGVPEDAADEFVFSDV 67 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCC-Cc---ceEEEEecccccCC---ccccccCcc------ccCccccccccccccC
Confidence 47999999999999999999998633 11 12334334443221 113322111 11111 356777899
Q ss_pred cEEEEeCC
Q 015501 174 EWALLIGA 181 (405)
Q Consensus 174 DiVIi~~g 181 (405)
|+|++++|
T Consensus 68 Divf~~ag 75 (334)
T COG0136 68 DIVFFAAG 75 (334)
T ss_pred CEEEEeCc
Confidence 99999875
No 219
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=94.95 E-value=0.026 Score=52.25 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=62.7
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHH-HhhhhcCCCcceEEEe--cCcccccCCC--
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-ELEDSLFPLLREVKIG--INPYELFEDA-- 173 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~-DL~d~~~~~~~~v~i~--~~~~eal~dA-- 173 (405)
|.|+||+|++|++++..|+..+. .+ +.+.. ....+... ... ++.... ..+. ....+.+++.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~-----~v-~~~~~-~~~~~~~~-~~~~~~~~~~------~dl~~~~~~~~~~~~~~~ 66 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH-----EV-IVLSR-SSNSESFE-EKKLNVEFVI------GDLTDKEQLEKLLEKANI 66 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT-----EE-EEEES-CSTGGHHH-HHHTTEEEEE------SETTSHHHHHHHHHHHTE
T ss_pred EEEEccCCHHHHHHHHHHHHcCC-----cc-ccccc-cccccccc-cccceEEEEE------eeccccccccccccccCc
Confidence 78999999999999999999875 12 22221 11111111 110 000000 0000 1123455555
Q ss_pred cEEEEeCCcCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 174 EWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 174 DiVIi~~g~~~--k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|.||.+++... .....-.+....|......+.+.+.+.. . .++|..+.
T Consensus 67 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~~i~~sS 116 (236)
T PF01370_consen 67 DVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAG-V-KRFIFLSS 116 (236)
T ss_dssp SEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-T-SEEEEEEE
T ss_pred eEEEEeecccccccccccccccccccccccccccccccccc-c-cccccccc
Confidence 99999877542 0112344667889999999999999873 3 46666554
No 220
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.93 E-value=0.14 Score=48.48 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gv 45 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGV 45 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 369999995 9999999999999886
No 221
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.91 E-value=0.3 Score=46.10 Aligned_cols=46 Identities=24% Similarity=0.195 Sum_probs=33.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.+|..++..|+..|. .|.+ .+++++.++....++.
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~i~ 55 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA-----EVIL----NGRDPAKLAAAAESLK 55 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 46899999999999999999998775 2544 4555555554444443
No 222
>PRK08643 acetoin reductase; Validated
Probab=94.91 E-value=0.33 Score=45.73 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=32.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+++.|+||+|.+|.+++..|++.|. .+.+ ++++.+.++....++.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~ 47 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF-----KVAI----VDYNEETAQAAADKLS 47 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 4789999999999999999998764 2443 3555555555555554
No 223
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=94.89 E-value=0.082 Score=52.66 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=56.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-----Ee--cCccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IG--INPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-----i~--~~~~e 168 (405)
|+||.|+||+|+||++++..|+..+. ..+.+ .++.... +....+.+.. .. .++. ++ .+..+
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~----~~v~~----~~~~~~~--~~~~~~~~~~-~~-~~~~~~~~Dl~d~~~~~~ 68 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETS----DAVVV----VDKLTYA--GNLMSLAPVA-QS-ERFAFEKVDICDRAELAR 68 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCC----CEEEE----EecCccc--cchhhhhhcc-cC-CceEEEECCCcChHHHHH
Confidence 57999999999999999999998764 12322 2221110 0001111100 00 0111 11 11123
Q ss_pred ccC--CCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhh
Q 015501 169 LFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 169 al~--dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~ 211 (405)
.++ +.|+||.+++..... ..........|..-...+.+.+.++
T Consensus 69 ~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~ 115 (355)
T PRK10217 69 VFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAY 115 (355)
T ss_pred HHhhcCCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHh
Confidence 344 389999988753211 1123345677887777788777653
No 224
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=94.89 E-value=0.093 Score=55.17 Aligned_cols=102 Identities=16% Similarity=0.179 Sum_probs=60.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccc---ccCCCc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE---LFEDAE 174 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e---al~dAD 174 (405)
+|+||| .|.+|.++|..|+..|. ++.+ .|++.++++....+.... ..+....+..+ .++++|
T Consensus 1 ~IG~IG-LG~MG~~mA~nL~~~G~-----~V~v----~drt~~~~~~l~~~~~~g-----~~~~~~~s~~e~v~~l~~~d 65 (467)
T TIGR00873 1 DIGVIG-LAVMGSNLALNMADHGF-----TVSV----YNRTPEKTDEFLAEHAKG-----KKIVGAYSIEEFVQSLERPR 65 (467)
T ss_pred CEEEEe-eHHHHHHHHHHHHhcCC-----eEEE----EeCCHHHHHHHHhhccCC-----CCceecCCHHHHHhhcCCCC
Confidence 489999 69999999999999875 3544 567767665443211100 01222222222 445789
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--chhHHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNA 229 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN--P~d~~t 229 (405)
+||++... .+.+.++...+..+..++.+||..+| |.++.-
T Consensus 66 vIil~v~~---------------~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~ 107 (467)
T TIGR00873 66 KIMLMVKA---------------GAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTER 107 (467)
T ss_pred EEEEECCC---------------cHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHH
Confidence 88876321 13344444555555446778888987 556543
No 225
>PRK07069 short chain dehydrogenase; Validated
Probab=94.87 E-value=0.44 Score=44.54 Aligned_cols=116 Identities=12% Similarity=0.094 Sum_probs=63.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch-hhhHHHHHHHhhhhcCC-Cc--ceEEEecC--------
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFP-LL--REVKIGIN-------- 165 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~-~~~l~g~a~DL~d~~~~-~~--~~v~i~~~-------- 165 (405)
||.|+||+|.+|.+++..|+..|. .+.+ .+++ .+.++....++.+.... .. ....++..
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 71 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA-----KVFL----TDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLA 71 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHH
Confidence 589999999999999999998774 2443 2333 34455444444322100 00 01111110
Q ss_pred -cccccCCCcEEEEeCCcCCCCCC---c---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 166 -PYELFEDAEWALLIGAKPRGPGM---E---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 166 -~~eal~dADiVIi~~g~~~k~g~---~---r~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
..+.+...|+||..+|....... + -...+..|.. ..+.+.+.+++. ..+.|++++..
T Consensus 72 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~ii~~ss~ 139 (251)
T PRK07069 72 QAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRAS--QPASIVNISSV 139 (251)
T ss_pred HHHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc--CCcEEEEecCh
Confidence 01224567999988775321111 1 1233556655 556666777664 34567776643
No 226
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=94.85 E-value=0.081 Score=52.61 Aligned_cols=25 Identities=16% Similarity=0.014 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+||.|+||+|+||++++..|+..|.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~ 25 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY 25 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC
Confidence 4899999999999999999998764
No 227
>PRK12827 short chain dehydrogenase; Provisional
Probab=94.81 E-value=0.53 Score=43.77 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~ 31 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA 31 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 47899999999999999999998764
No 228
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=94.80 E-value=0.091 Score=52.06 Aligned_cols=75 Identities=19% Similarity=0.175 Sum_probs=54.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
....+++||| +|..|...+..++.-.-+ .+|.+ .+++.++++..+.++.+.. ..++.+..+..+++++|
T Consensus 115 ~da~~l~iiG-aG~QA~~~~~a~~~v~~i---~~v~v----~~r~~~~a~~f~~~~~~~~---~~~v~~~~~~~eav~~a 183 (301)
T PRK06407 115 KNVENFTIIG-SGFQAETQLEGMASVYNP---KRIRV----YSRNFDHARAFAERFSKEF---GVDIRPVDNAEAALRDA 183 (301)
T ss_pred cCCcEEEEEC-CcHHHHHHHHHHHhcCCC---CEEEE----ECCCHHHHHHHHHHHHHhc---CCcEEEeCCHHHHHhcC
Confidence 3468999999 599999877777763222 34555 5788888888888776532 22566667789999999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+.+
T Consensus 184 DIV~ta 189 (301)
T PRK06407 184 DTITSI 189 (301)
T ss_pred CEEEEe
Confidence 999864
No 229
>PRK06101 short chain dehydrogenase; Provisional
Probab=94.79 E-value=0.1 Score=49.05 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHH
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV 145 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~ 145 (405)
|.++.|+||+|.+|.+++..|+..|. .+.+ .+++.++++..
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~-----~V~~----~~r~~~~~~~~ 41 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGW-----QVIA----CGRNQSVLDEL 41 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHH
Confidence 46799999999999999999998764 2444 45555555433
No 230
>PRK06141 ornithine cyclodeaminase; Validated
Probab=94.78 E-value=0.1 Score=51.96 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~-~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
...+|+||| +|.+|..++..+.. .+. ..|.+ .+++.++++..+.++.+. . .++....+..+++++|
T Consensus 124 ~~~~v~iiG-~G~~a~~~~~al~~~~~~----~~V~V----~~Rs~~~a~~~a~~~~~~--g--~~~~~~~~~~~av~~a 190 (314)
T PRK06141 124 DASRLLVVG-TGRLASLLALAHASVRPI----KQVRV----WGRDPAKAEALAAELRAQ--G--FDAEVVTDLEAAVRQA 190 (314)
T ss_pred CCceEEEEC-CcHHHHHHHHHHHhcCCC----CEEEE----EcCCHHHHHHHHHHHHhc--C--CceEEeCCHHHHHhcC
Confidence 468999999 59999999886665 332 23554 577888888888776532 1 1345556677899999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+.+
T Consensus 191 DIVi~a 196 (314)
T PRK06141 191 DIISCA 196 (314)
T ss_pred CEEEEe
Confidence 999764
No 231
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.78 E-value=0.13 Score=51.36 Aligned_cols=57 Identities=7% Similarity=-0.036 Sum_probs=39.1
Q ss_pred ceEEEecC--cccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHH
Q 015501 158 REVKIGIN--PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (405)
Q Consensus 158 ~~v~i~~~--~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~ 230 (405)
.+++++++ .++++++||+||.+.. ++.++-+.+-..+.++++|++++ .||-......
T Consensus 63 ~~i~~~~~~~~~~a~~~aD~ViEav~--------------E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~ 121 (314)
T PRK08269 63 ARIAVVARDGAADALADADLVFEAVP--------------EVLDAKREALRWLGRHVDADAII--ASTTSTFLVT 121 (314)
T ss_pred hCeEeecCcchHHHhccCCEEEECCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHH
Confidence 35666654 5688999999998732 24566666777788888777777 7776544333
No 232
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=94.77 E-value=0.23 Score=46.81 Aligned_cols=48 Identities=23% Similarity=0.169 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d 151 (405)
+.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.++++....++.+
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~-----~vvl----~~r~~~~~~~~~~~l~~ 55 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA-----EIII----NDITAERAELAVAKLRQ 55 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-----EEEE----EcCCHHHHHHHHHHHHh
Confidence 356899999999999999999998764 2444 45555666655555543
No 233
>PLN02686 cinnamoyl-CoA reductase
Probab=94.77 E-value=0.094 Score=53.09 Aligned_cols=118 Identities=11% Similarity=0.069 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc-CC-CcceEEE-ec---C---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FP-LLREVKI-GI---N--- 165 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~-~~-~~~~v~i-~~---~--- 165 (405)
++++|.|+||+|++|++++..|+..|. .+.+. .++.+.+... .++.... .. ....+.+ .. +
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G~-----~V~~~----~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~ 121 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHGY-----SVRIA----VDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPES 121 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHH
Confidence 367999999999999999999998775 24331 1222222211 1221100 00 0001111 11 1
Q ss_pred cccccCCCcEEEEeCCcCCCCCC--chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 166 PYELFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~k~g~--~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
..++++++|.|+.+++.....+. ....+...|..-...+.+.+.+..+-. ++|.++-
T Consensus 122 l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS 180 (367)
T PLN02686 122 LHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSS 180 (367)
T ss_pred HHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEecc
Confidence 23567889999877654211121 112344567777788888777642122 4444443
No 234
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=94.76 E-value=0.15 Score=52.57 Aligned_cols=103 Identities=14% Similarity=0.148 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCc----cccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELF 170 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~----~eal 170 (405)
+.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.++++... .+..... ..+.....+ .+.+
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~-----~Vi~----l~r~~~~l~~~~---~~~~~~v-~~v~~Dvsd~~~v~~~l 243 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA-----KVVA----LTSNSDKITLEI---NGEDLPV-KTLHWQVGQEAALAELL 243 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHH---hhcCCCe-EEEEeeCCCHHHHHHHh
Confidence 357899999999999999999998764 2433 344444433211 1110010 011111112 2346
Q ss_pred CCCcEEEEeCCcCCCCCCch---hhhHHhhHH----HHHHHHHHHHh
Q 015501 171 EDAEWALLIGAKPRGPGMER---AGLLDINGQ----IFAEQGKALNA 210 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r---~~ll~~N~~----i~~~i~~~i~~ 210 (405)
.+.|++|..+|.......+. ...++.|.. +++.+.+.+++
T Consensus 244 ~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~ 290 (406)
T PRK07424 244 EKVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKT 290 (406)
T ss_pred CCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999998776532222222 233455544 45555555654
No 235
>PRK08618 ornithine cyclodeaminase; Validated
Probab=94.74 E-value=0.093 Score=52.46 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
...+++||| +|.+|...+..++...-+ ..|.+ .+++.++++..+.++.+.. + .++....+..+++.+||
T Consensus 126 ~~~~v~iiG-aG~~a~~~~~al~~~~~~---~~v~v----~~r~~~~a~~~~~~~~~~~-~--~~~~~~~~~~~~~~~aD 194 (325)
T PRK08618 126 DAKTLCLIG-TGGQAKGQLEAVLAVRDI---ERVRV----YSRTFEKAYAFAQEIQSKF-N--TEIYVVNSADEAIEEAD 194 (325)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHhcCCc---cEEEE----ECCCHHHHHHHHHHHHHhc-C--CcEEEeCCHHHHHhcCC
Confidence 368999999 599998877766542212 23554 5777788887777665421 2 23444556678899999
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+|+.+
T Consensus 195 iVi~a 199 (325)
T PRK08618 195 IIVTV 199 (325)
T ss_pred EEEEc
Confidence 99875
No 236
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=94.73 E-value=0.41 Score=47.83 Aligned_cols=95 Identities=13% Similarity=0.050 Sum_probs=52.1
Q ss_pred hHHHHHHHHHhcccCCCCCceEEEeccccchhhhHH-HHHHHhhhhcCCCcceEEEecCcccccCCCcEEEEeCCcCCCC
Q 015501 108 IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGP 186 (405)
Q Consensus 108 VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~-g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVIi~~g~~~k~ 186 (405)
-|+.+|..|+..|. ++.+ .|++.++++ ..+..+.+.. .....+..++.++||+||++-.
T Consensus 31 gGspMArnLlkAGh-----eV~V----~Drnrsa~e~e~~e~LaeaG------A~~AaS~aEAAa~ADVVIL~LP----- 90 (341)
T TIGR01724 31 GGSRMAIEFAMAGH-----DVVL----AEPNREFMSDDLWKKVEDAG------VKVVSDDKEAAKHGEIHVLFTP----- 90 (341)
T ss_pred CHHHHHHHHHHCCC-----EEEE----EeCChhhhhhhhhHHHHHCC------CeecCCHHHHHhCCCEEEEecC-----
Confidence 37788998888765 3444 455545442 2223343321 2344567899999999998732
Q ss_pred CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-CchhHHHHHH
Q 015501 187 GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTNALIC 232 (405)
Q Consensus 187 g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP~d~~t~~~ 232 (405)
|.+..++++..+.....++.+||..| -+.+.+-+++
T Consensus 91 ----------d~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~ 127 (341)
T TIGR01724 91 ----------FGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSL 127 (341)
T ss_pred ----------CHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHH
Confidence 12334444444444443455555554 3444444544
No 237
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=94.73 E-value=0.089 Score=53.35 Aligned_cols=112 Identities=15% Similarity=0.190 Sum_probs=62.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC-cceEEEecCcccccCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFED 172 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~d 172 (405)
.++.++.|+||+|++|.+++..|.+.+.. ..++++|..........+-.++......+ ..++.-......++.+
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~-----~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~ 76 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELK-----LEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQG 76 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccc-----cEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccC
Confidence 45789999999999999999999998752 33444443332222322222210000000 0111112346789999
Q ss_pred CcEEEEeCC--cCCCCCCchhhhHHhhHHHHHHHHHHHHhh
Q 015501 173 AEWALLIGA--KPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 173 ADiVIi~~g--~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~ 211 (405)
+ .|++.+. .++..-..|......|.+--+.+.+.+.+.
T Consensus 77 ~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~ 116 (361)
T KOG1430|consen 77 A-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKEL 116 (361)
T ss_pred c-eEEEeccccCccccccchhhheeecchhHHHHHHHHHHh
Confidence 9 6665432 222221235555567777767777777774
No 238
>PRK09072 short chain dehydrogenase; Provisional
Probab=94.72 E-value=0.29 Score=46.43 Aligned_cols=46 Identities=33% Similarity=0.387 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
+..+|.|+||+|.+|..++..|+..|. .+.+ .+++.+.++....++
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~ 49 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-----RLLL----VGRNAEKLEALAARL 49 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHH
Confidence 346899999999999999999998774 2444 355555555444333
No 239
>PRK09186 flagellin modification protein A; Provisional
Probab=94.71 E-value=0.33 Score=45.65 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=33.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.++|.|+||+|.+|.+++..|+..+. .+.+ .+++.+.++....++
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~-----~v~~----~~r~~~~~~~~~~~l 48 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG-----IVIA----ADIDKEALNELLESL 48 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EecChHHHHHHHHHH
Confidence 46899999999999999999998775 2443 355556665555555
No 240
>PRK09291 short chain dehydrogenase; Provisional
Probab=94.68 E-value=0.59 Score=43.87 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++|.|+||+|.+|.+++..|++.|.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~ 27 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH 27 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 4799999999999999999998774
No 241
>PRK07832 short chain dehydrogenase; Provisional
Probab=94.68 E-value=0.55 Score=44.92 Aligned_cols=45 Identities=24% Similarity=0.295 Sum_probs=32.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+++.|+||+|.+|..++..|+..|. .+.+ ++++.+.++....++.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~-----~vv~----~~r~~~~~~~~~~~~~ 45 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA-----ELFL----TDRDADGLAQTVADAR 45 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 3799999999999999999998764 2443 3555555555555544
No 242
>PRK05717 oxidoreductase; Validated
Probab=94.67 E-value=0.065 Score=50.70 Aligned_cols=26 Identities=27% Similarity=-0.005 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.||.+++..|+..+.
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~ 35 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGW 35 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCC
Confidence 46899999999999999999998764
No 243
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=94.67 E-value=0.3 Score=48.15 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
+.++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++....++
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l 50 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-----HVIM----ACRNLKKAEAAAQEL 50 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHh
Confidence 356899999999999999999998774 2444 355556665555444
No 244
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=94.66 E-value=0.15 Score=51.25 Aligned_cols=66 Identities=17% Similarity=0.106 Sum_probs=41.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+.+||+||| .|.+|.+++..|...|+ .+.+. ++...+....+.+ + . +.. .+..+++++||
T Consensus 16 ~gktIgIIG-~GsmG~AlA~~L~~sG~-----~Vvv~----~r~~~~s~~~A~~--~---G----~~~-~s~~eaa~~AD 75 (330)
T PRK05479 16 KGKKVAIIG-YGSQGHAHALNLRDSGV-----DVVVG----LREGSKSWKKAEA--D---G----FEV-LTVAEAAKWAD 75 (330)
T ss_pred CCCEEEEEe-eHHHHHHHHHHHHHCCC-----EEEEE----ECCchhhHHHHHH--C---C----Cee-CCHHHHHhcCC
Confidence 457999999 59999999999998775 24331 2221222222221 1 1 112 25678999999
Q ss_pred EEEEeC
Q 015501 175 WALLIG 180 (405)
Q Consensus 175 iVIi~~ 180 (405)
+|+++.
T Consensus 76 VVvLaV 81 (330)
T PRK05479 76 VIMILL 81 (330)
T ss_pred EEEEcC
Confidence 999873
No 245
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.63 E-value=0.67 Score=43.12 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=32.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.+|.+++..|++.|. .|.+ ++++.+++.....++.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l~ 51 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA-----EVIV----VDICGDDAAATAELVE 51 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 46899999999999999999998764 2433 4555555554444443
No 246
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.63 E-value=0.64 Score=43.14 Aligned_cols=26 Identities=27% Similarity=0.171 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+++|.|+||+|.+|..++..|++.+.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~ 30 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA 30 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 46899999999999999999998764
No 247
>PRK06181 short chain dehydrogenase; Provisional
Probab=94.62 E-value=0.42 Score=45.22 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+++|.|+||+|.+|.+++..|+..+. .+.+ .+++.+.++....++.
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~-----~Vi~----~~r~~~~~~~~~~~l~ 46 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGA-----QLVL----AARNETRLASLAQELA 46 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 35799999999999999999998764 2443 3555555554444443
No 248
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=94.62 E-value=0.066 Score=52.38 Aligned_cols=75 Identities=24% Similarity=0.191 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
..++|+|+||+|+||||++-.|+..+. ..|+++.+- .+....+++.......++..-.....-+..+|
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~egh----~VIa~Dn~f--------tg~k~n~~~~~~~~~fel~~hdv~~pl~~evD 93 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEGH----EVIALDNYF--------TGRKENLEHWIGHPNFELIRHDVVEPLLKEVD 93 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcCC----eEEEEeccc--------ccchhhcchhccCcceeEEEeechhHHHHHhh
Confidence 358999999999999999999998773 245553322 12223334433122223333333445778899
Q ss_pred EEEEeCC
Q 015501 175 WALLIGA 181 (405)
Q Consensus 175 iVIi~~g 181 (405)
-|+..|.
T Consensus 94 ~IyhLAa 100 (350)
T KOG1429|consen 94 QIYHLAA 100 (350)
T ss_pred hhhhhcc
Confidence 9887543
No 249
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.60 E-value=0.78 Score=45.53 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAG 119 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~ 119 (405)
+++||+||| +|++|..++..+...
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~ 26 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRS 26 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcC
Confidence 458999999 699999988888763
No 250
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=94.59 E-value=0.73 Score=43.37 Aligned_cols=48 Identities=19% Similarity=0.166 Sum_probs=35.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+.++|.|+||+|.+|..++..|+..|. .+.+ .+++.+.++....++.
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~ 56 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-----HVLV----NGRNAATLEAAVAALR 56 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-----eEEE----EeCCHHHHHHHHHHHH
Confidence 3568999999999999999999998775 2444 4555566665555554
No 251
>PRK06182 short chain dehydrogenase; Validated
Probab=94.57 E-value=0.12 Score=49.56 Aligned_cols=112 Identities=14% Similarity=0.057 Sum_probs=59.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--Ccccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYEL---- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~ea---- 169 (405)
.++|.|+||+|.+|.+++..|++.|. .+.+ .+++.++++....+ .. .. ....++. +..+.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~l~~~~~~---~~-~~-~~~Dv~~~~~~~~~~~~~ 68 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY-----TVYG----AARRVDKMEDLASL---GV-HP-LSLDVTDEASIKAAVDTI 68 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHhC---CC-eE-EEeeCCCHHHHHHHHHHH
Confidence 46899999999999999999998764 2433 35555554432210 01 00 0111211 01111
Q ss_pred ---cCCCcEEEEeCCcCC-CCC--C---chhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 170 ---FEDAEWALLIGAKPR-GPG--M---ERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 170 ---l~dADiVIi~~g~~~-k~g--~---~r~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.+.|++|..+|... .+- . +-...+..|.. .++.+.+.+++. ..+.||+++.
T Consensus 69 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~--~~g~iv~isS 133 (273)
T PRK06182 69 IAEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQ--RSGRIINISS 133 (273)
T ss_pred HHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhc--CCCEEEEEcc
Confidence 237899999877532 111 1 11223445543 355555666653 3456777764
No 252
>PRK06197 short chain dehydrogenase; Provisional
Probab=94.57 E-value=0.45 Score=46.48 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE--- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e--- 168 (405)
+.++|.|+||+|.||.+++..|+..|. .+.+ ..++.++++....++.... + ..++.+. .| +.+
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~-----~vi~----~~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dl~d~~~v~ 83 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA-----HVVL----AVRNLDKGKAAAARITAAT-P-GADVTLQELDLTSLASVR 83 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhC-C-CCceEEEECCCCCHHHHH
Confidence 346899999999999999999998774 2443 3445455544444443211 1 0112111 11 111
Q ss_pred --------ccCCCcEEEEeCCcCCCCC-Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 --------LFEDAEWALLIGAKPRGPG-MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 --------al~dADiVIi~~g~~~k~g-~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|....+. .+. ...+..|.. +...+.+.+++. ..+.||+++-.
T Consensus 84 ~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~--~~~~iV~vSS~ 153 (306)
T PRK06197 84 AAADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV--PGSRVVTVSSG 153 (306)
T ss_pred HHHHHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC--CCCEEEEECCH
Confidence 2346899999876422111 111 122344433 355666666653 34677777643
No 253
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.54 E-value=0.17 Score=50.38 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=44.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCce-EEEecccc-chhhhHHHHHHHhhhhcCCC-cceEEEecCcccccCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPI-ALKLLGSE-RSLQALEGVAMELEDSLFPL-LREVKIGINPYELFED 172 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i-~L~l~~~d-~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~d 172 (405)
.++|+| ||+|.||..+...|-++.+ ++ .|+++.+. .. .|... .+ ..++.+..-..+++++
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~f-----pv~~l~l~~s~~~s----~gk~i-------~f~g~~~~V~~l~~~~f~~ 65 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDL-----EIEQISIVEIEPFG----EEQGI-------RFNNKAVEQIAPEEVEWAD 65 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCC-----chhheeeccccccc----CCCEE-------EECCEEEEEEECCccCccc
Confidence 368999 9999999999998888765 23 34444332 11 11111 12 1356666556779999
Q ss_pred CcEEEEeCC
Q 015501 173 AEWALLIGA 181 (405)
Q Consensus 173 ADiVIi~~g 181 (405)
.|++++ +|
T Consensus 66 vDia~f-ag 73 (322)
T PRK06901 66 FNYVFF-AG 73 (322)
T ss_pred CCEEEE-cC
Confidence 999999 54
No 254
>PRK07109 short chain dehydrogenase; Provisional
Probab=94.51 E-value=0.56 Score=46.82 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccc------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL------ 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea------ 169 (405)
.++|.|+||+|.||..++..|+..|. .+.+ .+++.++++....++....... .-+..-..+.+.
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~-----~Vvl----~~R~~~~l~~~~~~l~~~g~~~-~~v~~Dv~d~~~v~~~~~ 77 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGA-----KVVL----LARGEEGLEALAAEIRAAGGEA-LAVVADVADAEAVQAAAD 77 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHcCCcE-EEEEecCCCHHHHHHHHH
Confidence 46899999999999999999998774 2444 4566666666665554321000 001111112222
Q ss_pred -----cCCCcEEEEeCCcCC-CC-C-Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 170 -----FEDAEWALLIGAKPR-GP-G-MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 170 -----l~dADiVIi~~g~~~-k~-g-~~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+...|++|..+|... .+ . .+.. ..+..| ....+.+.+.+.+. ..+.||+++-
T Consensus 78 ~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~--~~g~iV~isS 144 (334)
T PRK07109 78 RAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPR--DRGAIIQVGS 144 (334)
T ss_pred HHHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEeCC
Confidence 346799998876432 11 1 1111 122333 33445555666553 3467777664
No 255
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=94.50 E-value=0.12 Score=53.56 Aligned_cols=106 Identities=21% Similarity=0.241 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+..+|+|+|| |.+|..++..|...|. ..+.+ .+++.+++...+.++.. .+....+..+.+.++|
T Consensus 181 ~~~~vlViGa-G~iG~~~a~~L~~~G~----~~V~v----~~r~~~ra~~la~~~g~-------~~~~~~~~~~~l~~aD 244 (423)
T PRK00045 181 SGKKVLVIGA-GEMGELVAKHLAEKGV----RKITV----ANRTLERAEELAEEFGG-------EAIPLDELPEALAEAD 244 (423)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHCCC----CeEEE----EeCCHHHHHHHHHHcCC-------cEeeHHHHHHHhccCC
Confidence 3579999995 9999999999987664 13544 56666666655554321 1111134557788999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (405)
+||.+.+.+. +-.+ ...++.. +..-.....+++-+++|-|+=
T Consensus 245 vVI~aT~s~~-~~i~--------~~~l~~~---~~~~~~~~~vviDla~Prdid 286 (423)
T PRK00045 245 IVISSTGAPH-PIIG--------KGMVERA---LKARRHRPLLLVDLAVPRDIE 286 (423)
T ss_pred EEEECCCCCC-cEEc--------HHHHHHH---HhhccCCCeEEEEeCCCCCCc
Confidence 9998754331 1111 1112221 111101457899999998753
No 256
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=94.50 E-value=0.13 Score=51.52 Aligned_cols=73 Identities=22% Similarity=0.275 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~-~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
...+++||| +|..|...+..|+. .++ ..|.+ .+++.++++..+.++.+.. + .++....+.++++.+|
T Consensus 128 ~~~~v~iiG-aG~qA~~~~~al~~~~~i----~~v~V----~~R~~~~a~~~a~~~~~~~-g--~~v~~~~~~~~av~~a 195 (326)
T TIGR02992 128 DSSVVAIFG-AGMQARLQLEALTLVRDI----RSARI----WARDSAKAEALALQLSSLL-G--IDVTAATDPRAAMSGA 195 (326)
T ss_pred CCcEEEEEC-CCHHHHHHHHHHHHhCCc----cEEEE----ECCCHHHHHHHHHHHHhhc-C--ceEEEeCCHHHHhccC
Confidence 457999999 59999998888874 332 23554 5788888888887775321 2 2344455667889999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+.+
T Consensus 196 DiVvta 201 (326)
T TIGR02992 196 DIIVTT 201 (326)
T ss_pred CEEEEe
Confidence 999975
No 257
>PRK06482 short chain dehydrogenase; Provisional
Probab=94.48 E-value=0.14 Score=49.10 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=22.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++|.|+||+|.+|++++..|+..+.
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~ 27 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD 27 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC
Confidence 5799999999999999999998774
No 258
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=94.47 E-value=0.18 Score=49.22 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=43.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+++||+||| .|.+|..++..|... ..+ .++. .+ .|++.++.+..+..+.. .....+..+.+.++|
T Consensus 5 ~~irIGIIG-~G~IG~~~a~~L~~~-~~~--~el~-aV--~dr~~~~a~~~a~~~g~--------~~~~~~~eell~~~D 69 (271)
T PRK13302 5 PELRVAIAG-LGAIGKAIAQALDRG-LPG--LTLS-AV--AVRDPQRHADFIWGLRR--------PPPVVPLDQLATHAD 69 (271)
T ss_pred CeeEEEEEC-ccHHHHHHHHHHHhc-CCC--eEEE-EE--ECCCHHHHHHHHHhcCC--------CcccCCHHHHhcCCC
Confidence 358999999 599999999988764 111 1222 12 45555655544432210 112244556678899
Q ss_pred EEEEeCC
Q 015501 175 WALLIGA 181 (405)
Q Consensus 175 iVIi~~g 181 (405)
+|+++..
T Consensus 70 ~Vvi~tp 76 (271)
T PRK13302 70 IVVEAAP 76 (271)
T ss_pred EEEECCC
Confidence 9999854
No 259
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.45 E-value=0.18 Score=45.85 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
||+|+|+ |.+|+.++..|+..|+
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gv 23 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGV 23 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC
Confidence 6899995 9999999999999886
No 260
>PRK12747 short chain dehydrogenase; Provisional
Probab=94.44 E-value=0.8 Score=43.05 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.||.+++..|+..|.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~ 29 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA 29 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
No 261
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.44 E-value=0.58 Score=43.26 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++++|.|+||+|.+|.+++..|++.+.
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~ 31 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA 31 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 357999999999999999999998775
No 262
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.44 E-value=0.29 Score=46.39 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
+++|.|+||+|.+|.+++..|++.|. .+.+ .+++.+.++....++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~ 46 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-----TLGL----VARRTDALQAFAARL 46 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHhc
Confidence 46899999999999999999998764 2444 455556655444443
No 263
>PLN02712 arogenate dehydrogenase
Probab=94.43 E-value=0.39 Score=52.79 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
+++||+||| .|.||..++..|...|
T Consensus 368 ~~~kIgIIG-lG~mG~slA~~L~~~G 392 (667)
T PLN02712 368 SKLKIAIVG-FGNFGQFLAKTMVKQG 392 (667)
T ss_pred CCCEEEEEe-cCHHHHHHHHHHHHCc
Confidence 468999999 5999999999998765
No 264
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=94.42 E-value=0.18 Score=47.69 Aligned_cols=45 Identities=16% Similarity=0.120 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.+++.|+||+|.+|.+++..|++.|. .+.+ .+++.+.++....++
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~ 50 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGA-----RVVI----ADIKPARARLAALEI 50 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEE----EcCCHHHHHHHHHHh
Confidence 45899999999999999999999875 2444 455656655544444
No 265
>PRK08219 short chain dehydrogenase; Provisional
Probab=94.42 E-value=0.21 Score=45.91 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAG 119 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~ 119 (405)
|+++.|+||+|.+|.+++..|++.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~ 26 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT 26 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh
Confidence 568999999999999999999976
No 266
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=94.40 E-value=0.1 Score=51.91 Aligned_cols=73 Identities=26% Similarity=0.202 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
...+++||| +|..+..-+..+..-.-+ ++|.+ .+++.++++..+.++.+ . ...+....+.++++++||
T Consensus 127 ~~~~l~viG-aG~QA~~~~~a~~~~~~i---~~v~v----~~r~~~~~~~~~~~~~~-~---~~~v~~~~~~~~av~~aD 194 (313)
T PF02423_consen 127 DARTLGVIG-AGVQARWHLRALAAVRPI---KEVRV----YSRSPERAEAFAARLRD-L---GVPVVAVDSAEEAVRGAD 194 (313)
T ss_dssp T--EEEEE---SHHHHHHHHHHHHHS-----SEEEE----E-SSHHHHHHHHHHHHC-C---CTCEEEESSHHHHHTTSS
T ss_pred CCceEEEEC-CCHHHHHHHHHHHHhCCc---eEEEE----EccChhHHHHHHHhhcc-c---cccceeccchhhhcccCC
Confidence 468999999 599999877766653213 34655 57888888988888887 2 235667777889999999
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+|+.+
T Consensus 195 ii~ta 199 (313)
T PF02423_consen 195 IIVTA 199 (313)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 99864
No 267
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.40 E-value=0.63 Score=45.42 Aligned_cols=46 Identities=20% Similarity=0.188 Sum_probs=34.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~-----~Vi~----~~R~~~~l~~~~~~l~ 85 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA-----TVVA----VARREDLLDAVADRIT 85 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHH
Confidence 36899999999999999999998764 2544 4666666665555543
No 268
>PRK07201 short chain dehydrogenase; Provisional
Probab=94.40 E-value=0.4 Score=51.98 Aligned_cols=103 Identities=16% Similarity=0.125 Sum_probs=56.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-C----------
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N---------- 165 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~---------- 165 (405)
|||.|+||+|++|++++..|+.... + ..|.. ++.+.....+........+ .+++... |
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~-g--~~V~~--l~R~~~~~~~~~~~~~~~~------~~v~~~~~Dl~~~~~~~~~ 69 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRR-E--ATVHV--LVRRQSLSRLEALAAYWGA------DRVVPLVGDLTEPGLGLSE 69 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCC-C--CEEEE--EECcchHHHHHHHHHhcCC------CcEEEEecccCCccCCcCH
Confidence 5899999999999999999994211 1 12432 2222222222222111100 1122111 1
Q ss_pred -cccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhh
Q 015501 166 -PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 166 -~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~ 211 (405)
..+.++++|+||.+++... ......+....|..-...+.+.+.+.
T Consensus 70 ~~~~~l~~~D~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~ 115 (657)
T PRK07201 70 ADIAELGDIDHVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERL 115 (657)
T ss_pred HHHHHhcCCCEEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhc
Confidence 1233478999998876432 22233345567888788888877774
No 269
>PRK06128 oxidoreductase; Provisional
Probab=94.39 E-value=0.42 Score=46.65 Aligned_cols=117 Identities=15% Similarity=0.025 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--c------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--P------ 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~------ 166 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+.. .+.....++.....+.+.. .++.+. .| +
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~-----~V~i~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v~~ 123 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA-----DIALNY--LPEEEQDAAEVVQLIQAEG----RKAVALPGDLKDEAFCRQ 123 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC-----EEEEEe--CCcchHHHHHHHHHHHHcC----CeEEEEecCCCCHHHHHH
Confidence 46899999999999999999998775 244322 2222222333333333211 111111 11 1
Q ss_pred -----ccccCCCcEEEEeCCcCC--CCC--Cc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 -----YELFEDAEWALLIGAKPR--GPG--ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 -----~eal~dADiVIi~~g~~~--k~g--~~---r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+.+...|++|..+|... .+. .+ -...+..|+.-...+.+.+..+-..++.||+++.
T Consensus 124 ~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 124 LVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 122346899999887532 211 12 1234566665555555555544323567777664
No 270
>PRK09135 pteridine reductase; Provisional
Probab=94.36 E-value=0.27 Score=45.78 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.+|++++..|+..+.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~ 31 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGY 31 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998764
No 271
>PRK07904 short chain dehydrogenase; Provisional
Probab=94.34 E-value=0.6 Score=44.39 Aligned_cols=116 Identities=10% Similarity=0.054 Sum_probs=62.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhh-HHHHHHHhhhhcCCCcceEEEe---cCccc--
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA-LEGVAMELEDSLFPLLREVKIG---INPYE-- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~-l~g~a~DL~d~~~~~~~~v~i~---~~~~e-- 168 (405)
+.++|.|+||+|.+|.+++..|+..+-+ .+.+ .+++.+. ++..+.++.... . .++.+. ..+++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~----~V~~----~~r~~~~~~~~~~~~l~~~~-~--~~v~~~~~D~~~~~~~ 75 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPA----RVVL----AALPDDPRRDAAVAQMKAAG-A--SSVEVIDFDALDTDSH 75 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCC----eEEE----EeCCcchhHHHHHHHHHhcC-C--CceEEEEecCCChHHH
Confidence 4678999999999999999999986421 2444 3455443 555555554321 0 011111 01111
Q ss_pred -----c---cCCCcEEEEeCCcCCCCCC---ch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 -----L---FEDAEWALLIGAKPRGPGM---ER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 -----a---l~dADiVIi~~g~~~k~g~---~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
. ..+.|++|..+|....... +- .+.+..|.. +.+.+.+.+.+. ..+.|++++-
T Consensus 76 ~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~--~~~~iv~isS 146 (253)
T PRK07904 76 PKVIDAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQ--GFGQIIAMSS 146 (253)
T ss_pred HHHHHHHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 1 1378988887665321111 11 123555543 234566666664 3466666654
No 272
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=94.30 E-value=0.48 Score=44.41 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=30.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
++.|+||+|.+|.+++..|++.|. .+.+ .+++.+.++....++.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~l~ 45 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF-----AVAV----ADLNEETAKETAKEIN 45 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 689999999999999999998774 2443 3444455544444443
No 273
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.29 E-value=0.24 Score=45.76 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.+|.+++..|++.|.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~ 32 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA 32 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC
Confidence 46899999999999999999998765
No 274
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.29 E-value=0.12 Score=49.85 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+++|.|+||+|.+|.+++..|+..|.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~ 29 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW 29 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 45799999999999999999998764
No 275
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=94.28 E-value=1 Score=42.24 Aligned_cols=48 Identities=29% Similarity=0.266 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d 151 (405)
+.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.+
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~l~~ 58 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGA-----TVIL----LGRTEEKLEAVYDEIEA 58 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----cEEE----EeCCHHHHHHHHHHHHh
Confidence 457999999999999999999998764 2443 45555666655555554
No 276
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=94.28 E-value=0.61 Score=44.00 Aligned_cols=116 Identities=12% Similarity=0.073 Sum_probs=62.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe---cCccc-----
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---INPYE----- 168 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~---~~~~e----- 168 (405)
.+|.|+||+|.+|.+++..|++.+. .+.+ .+++.+.++....++.... +. .++... ..+.+
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~-----~vi~----~~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~i~~~ 71 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY-----RVAV----ADINSEKAANVAQEINAEY-GE-GMAYGFGADATSEQSVLAL 71 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHhc-CC-ceeEEEEccCCCHHHHHHH
Confidence 4799999999999999999998764 2443 4555555554444443211 10 011111 11111
Q ss_pred ------ccCCCcEEEEeCCcCCCCC---Cchhh---hHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 ------LFEDAEWALLIGAKPRGPG---MERAG---LLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 ------al~dADiVIi~~g~~~k~g---~~r~~---ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|+||..+|.+.... .+..+ .+..|.. +.+.+.+.+.+. +.++.+|.++..
T Consensus 72 ~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~~~~~iv~~ss~ 142 (259)
T PRK12384 72 SRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRD-GIQGRIIQINSK 142 (259)
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhC-CCCcEEEEecCc
Confidence 1245799999877543211 11211 2333433 344555656553 235677777664
No 277
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.27 E-value=0.58 Score=44.32 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=33.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
|++.|+||+|.+|..++..|+..|. .+.+ .+++.+.++....++.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~ 45 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA-----RVVI----SSRNEENLEKALKELK 45 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 5899999999999999999998875 2444 4566666665555554
No 278
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.27 E-value=0.75 Score=42.79 Aligned_cols=45 Identities=29% Similarity=0.324 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~-----~Vi~----~~r~~~~~~~~~~~~ 51 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV-----NVGL----LARTEENLKAVAEEV 51 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHH
Confidence 46899999999999999999998775 2444 355555555444444
No 279
>PRK12744 short chain dehydrogenase; Provisional
Probab=94.25 E-value=0.72 Score=43.57 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~ 33 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGA 33 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998765
No 280
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=94.23 E-value=0.16 Score=49.32 Aligned_cols=110 Identities=17% Similarity=0.121 Sum_probs=59.0
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccc----ccCCCc
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE----LFEDAE 174 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e----al~dAD 174 (405)
|.|+||+|++|++++..|...+.. .+.+ ++.....+.+. ++... .....+........ .+.++|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~----~v~~--~~~~~~~~~~~----~~~~~--~~~~d~~~~~~~~~~~~~~~~~~D 68 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGIT----DILV--VDNLRDGHKFL----NLADL--VIADYIDKEDFLDRLEKGAFGKIE 68 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCc----eEEE--EecCCCchhhh----hhhhe--eeeccCcchhHHHHHHhhccCCCC
Confidence 579999999999999999987741 2332 11111111111 11100 00000110000111 235899
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+||.+++.......+.......|......+.+.+.+.. ..+|.++.
T Consensus 69 ~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~v~~SS 114 (314)
T TIGR02197 69 AIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKG---IPFIYASS 114 (314)
T ss_pred EEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhC---CcEEEEcc
Confidence 99998775322222334456788888888888887752 34555553
No 281
>PRK06172 short chain dehydrogenase; Provisional
Probab=94.22 E-value=0.51 Score=44.37 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.+|..++..|+..|. .+.+ ++++.+.++....++.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~ 52 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA-----KVVV----ADRDAAGGEETVALIR 52 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 47999999999999999999998764 2444 4555555555544443
No 282
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=94.22 E-value=0.13 Score=50.58 Aligned_cols=63 Identities=11% Similarity=0.158 Sum_probs=40.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| .|.+|..++..|+..+. ++.+ .|++.. .+ ++.+. . .....+..++.++||+|
T Consensus 1 m~Ig~IG-lG~MG~~ma~~L~~~G~-----~v~v----~~~~~~-~~----~~~~~--g----~~~~~s~~~~~~~advV 59 (292)
T PRK15059 1 MKLGFIG-LGIMGTPMAINLARAGH-----QLHV----TTIGPV-AD----ELLSL--G----AVSVETARQVTEASDII 59 (292)
T ss_pred CeEEEEc-cCHHHHHHHHHHHHCCC-----eEEE----EeCCHh-HH----HHHHc--C----CeecCCHHHHHhcCCEE
Confidence 4899999 69999999999998874 2443 233322 22 12111 1 12234566778999999
Q ss_pred EEeC
Q 015501 177 LLIG 180 (405)
Q Consensus 177 Ii~~ 180 (405)
|++-
T Consensus 60 i~~v 63 (292)
T PRK15059 60 FIMV 63 (292)
T ss_pred EEeC
Confidence 9873
No 283
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.21 E-value=0.19 Score=50.73 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|+||+|+||+|.+|..++..|...+.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~ 28 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPW 28 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCC
Confidence 58999999999999999998886543
No 284
>PLN02780 ketoreductase/ oxidoreductase
Probab=94.21 E-value=0.64 Score=46.20 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=37.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d 151 (405)
...+.|+||+|.||.+++..|+..|. .|.+ .+++.++++..+.++..
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~-----~Vil----~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL-----NLVL----VARNPDKLKDVSDSIQS 99 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----CEEE----EECCHHHHHHHHHHHHH
Confidence 46899999999999999999999875 3555 56777888877777754
No 285
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=94.20 E-value=0.38 Score=47.56 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=71.6
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcc---eEEEecCc------ccc
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR---EVKIGINP------YEL 169 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~---~v~i~~~~------~ea 169 (405)
.+|.||+..||.++|.+|+.+|+ .+.| +.+++++|+.++.|+++.. .... .+.++.++ .+.
T Consensus 52 AVVTGaTDGIGKayA~eLAkrG~-----nvvL----IsRt~~KL~~v~kEI~~~~-~vev~~i~~Dft~~~~~ye~i~~~ 121 (312)
T KOG1014|consen 52 AVVTGATDGIGKAYARELAKRGF-----NVVL----ISRTQEKLEAVAKEIEEKY-KVEVRIIAIDFTKGDEVYEKLLEK 121 (312)
T ss_pred EEEECCCCcchHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHHHh-CcEEEEEEEecCCCchhHHHHHHH
Confidence 46899999999999999999987 2555 7899999999999999875 3211 22334344 356
Q ss_pred cCCCcEEEEe--CCcCC-CCC-------CchhhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 170 FEDAEWALLI--GAKPR-GPG-------MERAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 170 l~dADiVIi~--~g~~~-k~g-------~~r~~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.+-|+=|+. +|... -|. .+-.+.+..| ...-+.+.+.|.+ ...|.|++++-
T Consensus 122 l~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~--r~~G~IvnigS 187 (312)
T KOG1014|consen 122 LAGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVE--RKKGIIVNIGS 187 (312)
T ss_pred hcCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhc--CCCceEEEecc
Confidence 7778875553 34221 121 1111222223 1233444566666 37888888874
No 286
>PRK06138 short chain dehydrogenase; Provisional
Probab=94.18 E-value=0.91 Score=42.39 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.+++.|+||+|.+|++++..|++.|. .+.+ .+++.+.++....++
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~ 49 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA-----RVVV----ADRDAEAAERVAAAI 49 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-----eEEE----ecCCHHHHHHHHHHH
Confidence 46899999999999999999998764 2444 345545444444333
No 287
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.17 E-value=0.9 Score=42.01 Aligned_cols=28 Identities=25% Similarity=0.141 Sum_probs=24.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+.++|.|+||+|.+|.+++..|++.|.
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~ 30 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGA 30 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC
Confidence 3457999999999999999999998764
No 288
>PRK06199 ornithine cyclodeaminase; Validated
Probab=94.16 E-value=0.17 Score=51.82 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
....++||| +|..+...+..++.- .-+ ++|.+ .+++.++++..+.++.+.. +...++.+..+..+++++|
T Consensus 154 da~~l~iiG-~G~QA~~~l~a~~~v~~~i---~~V~v----~~r~~~~a~~f~~~~~~~~-~~~~~v~~~~s~~eav~~A 224 (379)
T PRK06199 154 DSKVVGLLG-PGVMGKTILAAFMAVCPGI---DTIKI----KGRGQKSLDSFATWVAETY-PQITNVEVVDSIEEVVRGS 224 (379)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHhcCCc---cEEEE----ECCCHHHHHHHHHHHHHhc-CCCceEEEeCCHHHHHcCC
Confidence 468999999 599999888777762 212 24554 5788888888888876532 2112466777888999999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+.+
T Consensus 225 DIVvta 230 (379)
T PRK06199 225 DIVTYC 230 (379)
T ss_pred CEEEEc
Confidence 999864
No 289
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=94.16 E-value=0.19 Score=50.64 Aligned_cols=70 Identities=27% Similarity=0.373 Sum_probs=41.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVI 177 (405)
||+|+||+|.+|..++..|...+. . .+.|.++..+.+.. ....+. . .++.+..-+.++++++|+||
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~h-p---~~~l~~~as~~~~g----~~~~~~----~--~~~~~~~~~~~~~~~~D~v~ 66 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNF-P---IDKLVLLASDRSAG----RKVTFK----G--KELEVNEAKIESFEGIDIAL 66 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCC-C---hhhEEEEeccccCC----CeeeeC----C--eeEEEEeCChHHhcCCCEEE
Confidence 689999999999999998887543 1 23343332222211 111111 1 13333322356779999999
Q ss_pred EeCC
Q 015501 178 LIGA 181 (405)
Q Consensus 178 i~~g 181 (405)
++.+
T Consensus 67 ~a~g 70 (339)
T TIGR01296 67 FSAG 70 (339)
T ss_pred ECCC
Confidence 9755
No 290
>PRK06139 short chain dehydrogenase; Provisional
Probab=94.11 E-value=0.52 Score=47.09 Aligned_cols=47 Identities=23% Similarity=0.248 Sum_probs=36.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d 151 (405)
.++|.|+||+|.||.+++..|+..|. .+.+ .+++.++++....++.+
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~-----~Vvl----~~R~~~~l~~~~~~~~~ 53 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGA-----RLVL----AARDEEALQAVAEECRA 53 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHh
Confidence 46899999999999999999999875 2444 46666777766665543
No 291
>PRK05876 short chain dehydrogenase; Provisional
Probab=94.11 E-value=0.61 Score=44.99 Aligned_cols=114 Identities=13% Similarity=0.059 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cc-----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~----- 167 (405)
.+.+.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.... .++.. ..| +.
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~-----~Vv~----~~r~~~~l~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~ 72 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA-----RVVL----GDVDKPGLRQAVNHLRAEG----FDVHGVMCDVRHREEVTH 72 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CeEEEEeCCCCCHHHHHH
Confidence 45799999999999999999999875 2444 4555566665555554221 11111 111 11
Q ss_pred ------cccCCCcEEEEeCCcCCC-C--CCchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 ------ELFEDAEWALLIGAKPRG-P--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 ------eal~dADiVIi~~g~~~k-~--g~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.+...|++|..+|.... + ..+.. ..+..|.. +.+.+.+.+.+. +..+.|++++.
T Consensus 73 ~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~-~~~g~iv~isS 143 (275)
T PRK05876 73 LADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQ-GTGGHVVFTAS 143 (275)
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCCEEEEeCC
Confidence 122357999998775321 1 11221 22445543 344444445443 23567777764
No 292
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=94.09 E-value=0.15 Score=50.75 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=56.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchh--hhHHHHHHHhhhhcCCC-cceEEEec--CcccccC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL--QALEGVAMELEDSLFPL-LREVKIGI--NPYELFE 171 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~--~~l~g~a~DL~d~~~~~-~~~v~i~~--~~~eal~ 171 (405)
|||.|+||+|+||++++..|+..+.- .+.. .+... ...+ ...++.... .. .....++. +..++++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~----~v~~----~~~~~~~~~~~-~~~~~~~~~-~~~~~~~Dl~d~~~~~~~~~ 70 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQD----SVVN----VDKLTYAGNLE-SLADVSDSE-RYVFEHADICDRAELDRIFA 70 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCC----eEEE----ecCCCccchHH-HHHhcccCC-ceEEEEecCCCHHHHHHHHH
Confidence 58999999999999999999987641 1221 22110 1111 111111000 00 00111110 1123343
Q ss_pred --CCcEEEEeCCcCCC--CCCchhhhHHhhHHHHHHHHHHHHhh
Q 015501 172 --DAEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 172 --dADiVIi~~g~~~k--~g~~r~~ll~~N~~i~~~i~~~i~~~ 211 (405)
++|+||.+++.... +..........|+.....+.+.+.++
T Consensus 71 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~ 114 (352)
T PRK10084 71 QHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNY 114 (352)
T ss_pred hcCCCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHh
Confidence 47999998875321 11223456788888888888888764
No 293
>PRK06940 short chain dehydrogenase; Provisional
Probab=94.02 E-value=0.58 Score=45.11 Aligned_cols=95 Identities=17% Similarity=0.167 Sum_probs=46.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC-cceEEEecCccc--------
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYE-------- 168 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~e-------- 168 (405)
.+.|+| +|.+|.+++..|. .|. .|.+ .+++.+.++....++.+..... .....++ +++
T Consensus 4 ~~lItG-a~gIG~~la~~l~-~G~-----~Vv~----~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~--d~~~i~~~~~~ 70 (275)
T PRK06940 4 VVVVIG-AGGIGQAIARRVG-AGK-----KVLL----ADYNEENLEAAAKTLREAGFDVSTQEVDVS--SRESVKALAAT 70 (275)
T ss_pred EEEEEC-CChHHHHHHHHHh-CCC-----EEEE----EeCCHHHHHHHHHHHHhcCCeEEEEEeecC--CHHHHHHHHHH
Confidence 345555 5999999999985 442 2444 3455555554444443211000 0111121 111
Q ss_pred --ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHH
Q 015501 169 --LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGK 206 (405)
Q Consensus 169 --al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~ 206 (405)
.+...|++|..+|... ...+-...+..|..-...+.+
T Consensus 71 ~~~~g~id~li~nAG~~~-~~~~~~~~~~vN~~g~~~l~~ 109 (275)
T PRK06940 71 AQTLGPVTGLVHTAGVSP-SQASPEAILKVDLYGTALVLE 109 (275)
T ss_pred HHhcCCCCEEEECCCcCC-chhhHHHHHHHhhHHHHHHHH
Confidence 1246899999887642 112222345556443333333
No 294
>PRK07340 ornithine cyclodeaminase; Validated
Probab=94.01 E-value=0.17 Score=50.24 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~-~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
...+|+||| +|.+|...+..+.. .+. ..+.+ .+++.++++..+.++... .. .+. ..+..+++.+|
T Consensus 124 ~~~~v~IiG-aG~qa~~~~~al~~~~~~----~~v~v----~~r~~~~a~~~a~~~~~~--~~--~~~-~~~~~~av~~a 189 (304)
T PRK07340 124 PPGDLLLIG-TGVQARAHLEAFAAGLPV----RRVWV----RGRTAASAAAFCAHARAL--GP--TAE-PLDGEAIPEAV 189 (304)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHhCCC----CEEEE----EcCCHHHHHHHHHHHHhc--CC--eeE-ECCHHHHhhcC
Confidence 468999999 59999999998875 333 23554 577778888887776532 11 222 35567799999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+.+
T Consensus 190 DiVita 195 (304)
T PRK07340 190 DLVVTA 195 (304)
T ss_pred CEEEEc
Confidence 999975
No 295
>PRK08251 short chain dehydrogenase; Provisional
Probab=94.00 E-value=1.1 Score=41.78 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=46.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec---Ccc------
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---NPY------ 167 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~---~~~------ 167 (405)
+++.|+||+|.+|.+++..|+..+. .+.+ .+++.++++....++.... +. .++.+.. .+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~~~~~ 71 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR-----DLAL----CARRTDRLEELKAELLARY-PG-IKVAVAALDVNDHDQVFEV 71 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhhC-CC-ceEEEEEcCCCCHHHHHHH
Confidence 5799999999999999999998764 2444 3555565555555444321 10 1122111 112
Q ss_pred -----cccCCCcEEEEeCCcC
Q 015501 168 -----ELFEDAEWALLIGAKP 183 (405)
Q Consensus 168 -----eal~dADiVIi~~g~~ 183 (405)
+.+...|++|..+|..
T Consensus 72 ~~~~~~~~~~id~vi~~ag~~ 92 (248)
T PRK08251 72 FAEFRDELGGLDRVIVNAGIG 92 (248)
T ss_pred HHHHHHHcCCCCEEEECCCcC
Confidence 2244689999987753
No 296
>PLN02253 xanthoxin dehydrogenase
Probab=94.00 E-value=0.23 Score=47.62 Aligned_cols=26 Identities=15% Similarity=0.048 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~ 43 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGA 43 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC
Confidence 46899999999999999999998774
No 297
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.99 E-value=0.36 Score=45.82 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=56.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch----hhh---HHHHHHHhhhhcCCCcceEEEecCccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS----LQA---LEGVAMELEDSLFPLLREVKIGINPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~----~~~---l~g~a~DL~d~~~~~~~~v~i~~~~~e 168 (405)
-.||.|+|| |.+|..++..|...|+-. ..|.+ +|++ .++ +.....++.+.. .. .. ...+..+
T Consensus 25 ~~rvlvlGA-GgAg~aiA~~L~~~G~~~--~~i~i----vdr~gl~~~~r~~~L~~~~~~la~~~-~~-~~--~~~~l~~ 93 (226)
T cd05311 25 EVKIVINGA-GAAGIAIARLLLAAGAKP--ENIVV----VDSKGVIYEGREDDLNPDKNEIAKET-NP-EK--TGGTLKE 93 (226)
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCcCc--ceEEE----EeCCCccccccchhhhHHHHHHHHHh-cc-Cc--ccCCHHH
Confidence 469999995 999999999999877621 13544 3444 222 222223332211 10 01 1124458
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
+++++|++|-+.+ +|+- + .+..+.| + ++.++..++||..
T Consensus 94 ~l~~~dvlIgaT~----~G~~-------~----~~~l~~m---~-~~~ivf~lsnP~~ 132 (226)
T cd05311 94 ALKGADVFIGVSR----PGVV-------K----KEMIKKM---A-KDPIVFALANPVP 132 (226)
T ss_pred HHhcCCEEEeCCC----CCCC-------C----HHHHHhh---C-CCCEEEEeCCCCC
Confidence 8899999887633 4441 1 1222222 2 5567777889974
No 298
>PRK05865 hypothetical protein; Provisional
Probab=93.99 E-value=0.089 Score=59.08 Aligned_cols=103 Identities=17% Similarity=0.078 Sum_probs=60.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe--cCcccccCCCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~eal~dAD 174 (405)
|||.|+||+|++|++++..|+..|. .+.. ++++.... +.... .+ ....+. ....++++++|
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~-----~Vv~----l~R~~~~~------~~~~v-~~-v~gDL~D~~~l~~al~~vD 63 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH-----EVVG----IARHRPDS------WPSSA-DF-IAADIRDATAVESAMTGAD 63 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-----EEEE----EECCchhh------cccCc-eE-EEeeCCCHHHHHHHHhCCC
Confidence 5899999999999999999998764 2433 23321110 00000 00 011111 12235678899
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+||.+++... + ....|..-...+.+.+.+.. -..+|.++.+.
T Consensus 64 ~VVHlAa~~~-~------~~~vNv~GT~nLLeAa~~~g--vkr~V~iSS~~ 105 (854)
T PRK05865 64 VVAHCAWVRG-R------NDHINIDGTANVLKAMAETG--TGRIVFTSSGH 105 (854)
T ss_pred EEEECCCccc-c------hHHHHHHHHHHHHHHHHHcC--CCeEEEECCcH
Confidence 9999876421 1 34567666777777777642 23677777664
No 299
>PRK06823 ornithine cyclodeaminase; Validated
Probab=93.97 E-value=0.21 Score=49.87 Aligned_cols=73 Identities=19% Similarity=0.129 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
...+++||| +|..+...+..++...-+ ++|.+ .+++.++++..+..+.+. ..++.+..+..+++++||
T Consensus 127 d~~~l~iiG-~G~qA~~~~~a~~~v~~i---~~v~v----~~r~~~~a~~~~~~~~~~----~~~v~~~~~~~~av~~AD 194 (315)
T PRK06823 127 HVSAIGIVG-TGIQARMQLMYLKNVTDC---RQLWV----WGRSETALEEYRQYAQAL----GFAVNTTLDAAEVAHAAN 194 (315)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhcCCC---CEEEE----ECCCHHHHHHHHHHHHhc----CCcEEEECCHHHHhcCCC
Confidence 478999999 599999888777764222 34555 578888888777655432 124666677789999999
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+|+.+
T Consensus 195 IV~ta 199 (315)
T PRK06823 195 LIVTT 199 (315)
T ss_pred EEEEe
Confidence 99875
No 300
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=93.95 E-value=0.22 Score=46.33 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.+++.|+||+|.+|.+++..|++.+.
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~ 31 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGA 31 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC
Confidence 357999999999999999999998774
No 301
>PRK07035 short chain dehydrogenase; Provisional
Probab=93.94 E-value=0.54 Score=44.15 Aligned_cols=46 Identities=24% Similarity=0.189 Sum_probs=33.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~~~ 53 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGA-----HVIV----SSRKLDGCQAVADAIV 53 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 36899999999999999999998774 2444 4555566655555554
No 302
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=93.93 E-value=0.48 Score=46.95 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|++|++++..|+..|.
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~ 31 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGY 31 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCC
Confidence 46899999999999999999998764
No 303
>PRK06949 short chain dehydrogenase; Provisional
Probab=93.93 E-value=0.41 Score=45.01 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.++|.|+||+|.||++++..|+..+. .+.+ .+++.++++....++
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~l 53 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGA-----KVVL----ASRRVERLKELRAEI 53 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHH
Confidence 47999999999999999999998764 2443 355556655554444
No 304
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=93.93 E-value=0.47 Score=51.88 Aligned_cols=96 Identities=8% Similarity=0.040 Sum_probs=58.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc-hhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~-~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (405)
+..|||.|+||+|++|++++..|...+. ++.+.. .+. +.+.+ ..++.+ .+
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~-----~v~~~~--~~l~d~~~v---~~~i~~-------------------~~ 428 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI-----AYEYGK--GRLEDRSSL---LADIRN-------------------VK 428 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCC-----eEEeec--cccccHHHH---HHHHHh-------------------hC
Confidence 3457999999999999999999987653 232111 111 11111 111110 15
Q ss_pred CcEEEEeCCcCCCCC-----CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe
Q 015501 173 AEWALLIGAKPRGPG-----MERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (405)
Q Consensus 173 ADiVIi~~g~~~k~g-----~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvv 221 (405)
.|+||.+++....+. .+..+....|+.....+++.+++.. +.++++
T Consensus 429 pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g---~~~v~~ 479 (668)
T PLN02260 429 PTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENG---LLMMNF 479 (668)
T ss_pred CCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcC---CeEEEE
Confidence 799999876542221 1344567789999999999988862 344554
No 305
>PRK07589 ornithine cyclodeaminase; Validated
Probab=93.92 E-value=0.17 Score=51.13 Aligned_cols=73 Identities=16% Similarity=0.088 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
...+++||| +|..+...+..++.-.-+ ++|.+ .+++.++++..+.++.+. ..++.+..+..+++++||
T Consensus 128 da~~l~iiG-aG~QA~~~l~a~~~vr~i---~~V~v----~~r~~~~a~~~~~~~~~~----~~~v~~~~~~~~av~~AD 195 (346)
T PRK07589 128 DSRTMALIG-NGAQSEFQALAFKALLGI---EEIRL----YDIDPAATAKLARNLAGP----GLRIVACRSVAEAVEGAD 195 (346)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHHhCCc---eEEEE----EeCCHHHHHHHHHHHHhc----CCcEEEeCCHHHHHhcCC
Confidence 368999999 599998877666653212 34554 577888888888877642 124666677889999999
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+|+.+
T Consensus 196 IIvta 200 (346)
T PRK07589 196 IITTV 200 (346)
T ss_pred EEEEe
Confidence 99975
No 306
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.88 E-value=0.54 Score=40.78 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
||.|+|+ |.+|+.++..|+..|+
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv 23 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV 23 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC
Confidence 6899995 9999999999999887
No 307
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=93.88 E-value=0.23 Score=49.01 Aligned_cols=100 Identities=17% Similarity=0.319 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
..+|+.|| .|.+|++++..|+..|. .+.+ .|++.++. .+|.+.. .++...+.|..+++|+
T Consensus 35 ~~~iGFIG-LG~MG~~M~~nLik~G~-----kVtV----~dr~~~k~----~~f~~~G------a~v~~sPaeVae~sDv 94 (327)
T KOG0409|consen 35 KTRIGFIG-LGNMGSAMVSNLIKAGY-----KVTV----YDRTKDKC----KEFQEAG------ARVANSPAEVAEDSDV 94 (327)
T ss_pred cceeeEEe-eccchHHHHHHHHHcCC-----EEEE----EeCcHHHH----HHHHHhc------hhhhCCHHHHHhhcCE
Confidence 57999999 79999999999999876 3555 34544443 3444432 1234567899999999
Q ss_pred EEEeCCcCC----------------CCCCch-hhhHHhhHHHHHHHHHHHHhhcCCCeEE
Q 015501 176 ALLIGAKPR----------------GPGMER-AGLLDINGQIFAEQGKALNAVASRNVKV 218 (405)
Q Consensus 176 VIi~~g~~~----------------k~g~~r-~~ll~~N~~i~~~i~~~i~~~a~p~a~v 218 (405)
||..-+.|- .+|..- .|.-...-...+++++.+.. .++++
T Consensus 95 vitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~---~~~~~ 151 (327)
T KOG0409|consen 95 VITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN---KGGRF 151 (327)
T ss_pred EEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh---CCCeE
Confidence 998644321 122111 23333345667788887775 35555
No 308
>PRK12320 hypothetical protein; Provisional
Probab=93.87 E-value=0.11 Score=57.17 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=55.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-CcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~~eal~dADi 175 (405)
|||.|+||+|+||++++..|+..+. +|.. +++.... ..+....+. ...++. ...+++.++|+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~-----~Vi~----ldr~~~~-------~~~~~ve~v-~~Dl~d~~l~~al~~~D~ 63 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH-----TVSG----IAQHPHD-------ALDPRVDYV-CASLRNPVLQELAGEADA 63 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-----EEEE----EeCChhh-------cccCCceEE-EccCCCHHHHHHhcCCCE
Confidence 5899999999999999999998764 2332 2322111 000000000 000110 12345678999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
||..++.. +.. -...|..-...+.+.+++. + .++|.+|
T Consensus 64 VIHLAa~~--~~~----~~~vNv~Gt~nLleAA~~~-G--vRiV~~S 101 (699)
T PRK12320 64 VIHLAPVD--TSA----PGGVGITGLAHVANAAARA-G--ARLLFVS 101 (699)
T ss_pred EEEcCccC--ccc----hhhHHHHHHHHHHHHHHHc-C--CeEEEEE
Confidence 99987542 111 1135677777788877774 2 3555554
No 309
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.86 E-value=0.12 Score=46.87 Aligned_cols=94 Identities=23% Similarity=0.252 Sum_probs=53.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-.+|+|+| .|.||..++..|..-|+ .|.. +|+...... ...+.. +. ..+..+.++.||+
T Consensus 36 g~tvgIiG-~G~IG~~vA~~l~~fG~-----~V~~----~d~~~~~~~----~~~~~~------~~-~~~l~ell~~aDi 94 (178)
T PF02826_consen 36 GKTVGIIG-YGRIGRAVARRLKAFGM-----RVIG----YDRSPKPEE----GADEFG------VE-YVSLDELLAQADI 94 (178)
T ss_dssp TSEEEEES-TSHHHHHHHHHHHHTT------EEEE----EESSCHHHH----HHHHTT------EE-ESSHHHHHHH-SE
T ss_pred CCEEEEEE-EcCCcCeEeeeeecCCc-----eeEE----ecccCChhh----hccccc------ce-eeehhhhcchhhh
Confidence 58999999 59999999999997665 2332 455433222 111111 11 2356788899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
|++.. |..+. ++ .+ -|.+. +.+. ++++++||++--
T Consensus 95 v~~~~--plt~~-T~-~l--i~~~~-------l~~m-k~ga~lvN~aRG 129 (178)
T PF02826_consen 95 VSLHL--PLTPE-TR-GL--INAEF-------LAKM-KPGAVLVNVARG 129 (178)
T ss_dssp EEE-S--SSSTT-TT-TS--BSHHH-------HHTS-TTTEEEEESSSG
T ss_pred hhhhh--ccccc-cc-ee--eeeee-------eecc-ccceEEEeccch
Confidence 99873 22221 11 11 12222 2333 578999999853
No 310
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.86 E-value=0.29 Score=45.94 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+..||+|+|+ |.+|+.++..|+..|+
T Consensus 27 ~~~~V~ViG~-GglGs~ia~~La~~Gv 52 (212)
T PRK08644 27 KKAKVGIAGA-GGLGSNIAVALARSGV 52 (212)
T ss_pred hCCCEEEECc-CHHHHHHHHHHHHcCC
Confidence 3569999995 9999999999999887
No 311
>PRK07985 oxidoreductase; Provisional
Probab=93.82 E-value=0.75 Score=44.86 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=23.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+++.|+||+|.||.+++..|+..|.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~ 74 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGA 74 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC
Confidence 6899999999999999999999875
No 312
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=93.82 E-value=0.65 Score=50.83 Aligned_cols=115 Identities=19% Similarity=0.117 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchh--hhHHHHHHHhhhhcCCCcceEEEe-cC--ccc-
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL--QALEGVAMELEDSLFPLLREVKIG-IN--PYE- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~--~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e- 168 (405)
+++||.|+||+|+||++++..|+..+. + ..|.. .|+.. ..+. .+.... . ..++.+. .| +.+
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~-~--~~V~~----~d~~~~~~~~~----~l~~~~-~-~~~v~~~~~Dl~d~~~ 71 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYP-D--YKIVV----LDKLDYCSNLK----NLNPSK-S-SPNFKFVKGDIASADL 71 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCC-C--CEEEE----EeCCCccchhh----hhhhcc-c-CCCeEEEECCCCChHH
Confidence 468999999999999999999998632 1 12322 22210 1111 111000 0 0122221 11 111
Q ss_pred ---c--cCCCcEEEEeCCcCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 ---L--FEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 ---a--l~dADiVIi~~g~~~k~g--~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
. ..++|+||.+++...... .+.......|..-...+.+.+++.. .-..+|.++-
T Consensus 72 ~~~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~-~vkr~I~~SS 132 (668)
T PLN02260 72 VNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTG-QIRRFIHVST 132 (668)
T ss_pred HHHHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEcc
Confidence 1 257999999877532111 1223456678777788888887752 2335666653
No 313
>PRK07677 short chain dehydrogenase; Provisional
Probab=93.81 E-value=1.2 Score=41.83 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=32.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~~~ 46 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-----NVVI----TGRTKEKLEEAKLEIE 46 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 5789999999999999999998775 2444 3555555555544443
No 314
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.79 E-value=1.1 Score=41.74 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|.+++..|++.|.
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~ 29 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGY 29 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998764
No 315
>PRK05875 short chain dehydrogenase; Provisional
Probab=93.79 E-value=0.96 Score=43.13 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=33.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~ 52 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA-----AVMI----VGRNPDKLAAAAEEIE 52 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHH
Confidence 47999999999999999999998775 2444 3455455554444443
No 316
>PRK06198 short chain dehydrogenase; Provisional
Probab=93.78 E-value=0.99 Score=42.49 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~ 31 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGA 31 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998765
No 317
>PLN00203 glutamyl-tRNA reductase
Probab=93.77 E-value=0.22 Score=53.09 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
..||+|||| |.+|..++..|...|. ..|.+ ++++.++++..+..+.... ..+....+..+++.+||+
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~----~~V~V----~nRs~era~~La~~~~g~~----i~~~~~~dl~~al~~aDV 332 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGC----TKMVV----VNRSEERVAALREEFPDVE----IIYKPLDEMLACAAEADV 332 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCC----CeEEE----EeCCHHHHHHHHHHhCCCc----eEeecHhhHHHHHhcCCE
Confidence 579999995 9999999999988764 13554 5777777766654432110 011112345678899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhc---CCCeEEEEeCCchhH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA---SRNVKVIVVGNPCNT 227 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a---~p~a~vIvvtNP~d~ 227 (405)
||.+-+.+ .| -+.++..+.+.... +..-.+|-++.|-|+
T Consensus 333 VIsAT~s~-~p------------vI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdI 374 (519)
T PLN00203 333 VFTSTSSE-TP------------LFLKEHVEALPPASDTVGGKRLFVDISVPRNV 374 (519)
T ss_pred EEEccCCC-CC------------eeCHHHHHHhhhcccccCCCeEEEEeCCCCCC
Confidence 98753322 12 12223333332110 112478899999765
No 318
>PRK05867 short chain dehydrogenase; Provisional
Probab=93.77 E-value=1.2 Score=41.87 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=34.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++..+.++.
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~ 54 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA-----QVAI----AARHLDALEKLADEIG 54 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHH
Confidence 46899999999999999999998775 2444 3555566665555554
No 319
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=93.75 E-value=0.3 Score=41.25 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
||+|+|++|.+|..++..|....
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~ 23 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHP 23 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCC
Confidence 68999988999999999888753
No 320
>PRK05884 short chain dehydrogenase; Provisional
Probab=93.72 E-value=0.22 Score=46.50 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=30.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHH
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM 147 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~ 147 (405)
||+.|+||+|.+|.+++..|+..+. .+.+ .+++.++++..+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~-----~v~~----~~r~~~~~~~~~~ 42 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH-----KVTL----VGARRDDLEVAAK 42 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHH
Confidence 4899999999999999999998764 2444 3555555554443
No 321
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=93.72 E-value=0.11 Score=49.40 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHH
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG 144 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g 144 (405)
+.+++.|+||+|.+|.+++..|++.|. .+.+ .+++.+.++.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~ 44 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA-----RVAV----LDKSAAGLQE 44 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHH
Confidence 357999999999999999999998775 2444 3555555443
No 322
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=93.72 E-value=0.3 Score=47.59 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+..++.|+|| |.+|.+++..|...+.. .|.+ .+++.++++..+.++.... .+.+..+..+.+.++|
T Consensus 122 ~~k~vlVlGa-Gg~a~ai~~aL~~~g~~----~V~v----~~R~~~~a~~l~~~~~~~~-----~~~~~~~~~~~~~~~D 187 (278)
T PRK00258 122 KGKRILILGA-GGAARAVILPLLDLGVA----EITI----VNRTVERAEELAKLFGALG-----KAELDLELQEELADFD 187 (278)
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHhhhcc-----ceeecccchhccccCC
Confidence 3468999995 99999999999987742 3554 5777777776666554221 1222123357788999
Q ss_pred EEEEeC
Q 015501 175 WALLIG 180 (405)
Q Consensus 175 iVIi~~ 180 (405)
+||.+-
T Consensus 188 ivInaT 193 (278)
T PRK00258 188 LIINAT 193 (278)
T ss_pred EEEECC
Confidence 999864
No 323
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.71 E-value=0.51 Score=43.84 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~Gv 45 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAGV 45 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999886
No 324
>PRK08703 short chain dehydrogenase; Provisional
Probab=93.71 E-value=1.2 Score=41.38 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=33.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l 50 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAGA-----TVIL----VARHQKKLEKVYDAI 50 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC-----EEEE----EeCChHHHHHHHHHH
Confidence 36899999999999999999998764 2443 466666666555444
No 325
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=93.69 E-value=0.34 Score=47.09 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=61.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccc-cCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL-FEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea-l~dADi 175 (405)
+||+|||+ |.+|..++..|..+... ++.|..+ .+++.++.+..+ +. +.+..+..+- ....|+
T Consensus 3 ~rvgiIG~-GaIG~~va~~l~~~~~~----~~~l~~V-~~~~~~~~~~~~----~~-------~~~~~~l~~ll~~~~Dl 65 (267)
T PRK13301 3 HRIAFIGL-GAIASDVAAGLLADAAQ----PCQLAAL-TRNAADLPPALA----GR-------VALLDGLPGLLAWRPDL 65 (267)
T ss_pred eEEEEECc-cHHHHHHHHHHhcCCCC----ceEEEEE-ecCCHHHHHHhh----cc-------CcccCCHHHHhhcCCCE
Confidence 69999995 99999999998775432 2333333 455544443332 11 1122333332 378999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
||-+++ .+.+++++..+=+. +.+-.++-++==.|
T Consensus 66 VVE~A~----------------~~av~e~~~~iL~~-g~dlvv~SvGALaD 99 (267)
T PRK13301 66 VVEAAG----------------QQAIAEHAEGCLTA-GLDMIICSAGALAD 99 (267)
T ss_pred EEECCC----------------HHHHHHHHHHHHhc-CCCEEEEChhHhcC
Confidence 999987 48899999888875 36666666665444
No 326
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=93.69 E-value=1.3 Score=42.81 Aligned_cols=67 Identities=27% Similarity=0.352 Sum_probs=39.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||+|+|++|.||..++..+...+-+ ++.- . +|.+.++.... . .. .+..+.+..+.++++|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~----elva-v--~d~~~~~~~~~----~----~~--~i~~~~dl~~ll~~~Dv 63 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDL----ELVA-A--VDRPGSPLVGQ----G----AL--GVAITDDLEAVLADADV 63 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCC----EEEE-E--EecCCcccccc----C----CC--CccccCCHHHhccCCCE
Confidence 589999997699999999877754211 2322 1 34433333211 1 11 23334455556678999
Q ss_pred EEEe
Q 015501 176 ALLI 179 (405)
Q Consensus 176 VIi~ 179 (405)
||..
T Consensus 64 Vid~ 67 (257)
T PRK00048 64 LIDF 67 (257)
T ss_pred EEEC
Confidence 9854
No 327
>PRK12829 short chain dehydrogenase; Provisional
Probab=93.68 E-value=1.4 Score=41.43 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.+++.|+||+|.+|++++..|++.|.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~ 36 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA 36 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 457999999999999999999998765
No 328
>PRK08223 hypothetical protein; Validated
Probab=93.67 E-value=0.26 Score=48.56 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|||+ |.+|+.++..|+..|+
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGV 51 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGI 51 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCC
Confidence 469999995 9999999999999987
No 329
>PRK09242 tropinone reductase; Provisional
Probab=93.67 E-value=1.1 Score=42.11 Aligned_cols=115 Identities=14% Similarity=0.129 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--c------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--P------ 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~------ 166 (405)
.+++.|+||+|.||..++..|+..|. .+.+ .+++.+.++....++.+.. +. .++... .| +
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~-----~v~~----~~r~~~~~~~~~~~l~~~~-~~-~~~~~~~~Dl~~~~~~~~ 77 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA-----DVLI----VARDADALAQARDELAEEF-PE-REVHGLAADVSDDEDRRA 77 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhhC-CC-CeEEEEECCCCCHHHHHH
Confidence 46899999999999999999998775 2443 3555566665555554331 11 112111 11 1
Q ss_pred -----ccccCCCcEEEEeCCcCC-CCC--Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 -----YELFEDAEWALLIGAKPR-GPG--MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 -----~eal~dADiVIi~~g~~~-k~g--~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+.+...|++|..+|... .+. .+.. ..+..|.. +.+...+.+.+. +.+.+|+++-
T Consensus 78 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~ii~~sS 147 (257)
T PRK09242 78 ILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQH--ASSAIVNIGS 147 (257)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCceEEEECc
Confidence 123456799998876421 111 1111 22344433 334444455442 4466666654
No 330
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=93.65 E-value=0.13 Score=53.19 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=50.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
..||.|||| |.+|..++..|...|.- .|.+ .+++.++++..+.++... .+....+.++.+.+||+
T Consensus 181 ~kkvlviGa-G~~a~~va~~L~~~g~~----~I~V----~nRt~~ra~~La~~~~~~------~~~~~~~l~~~l~~aDi 245 (414)
T PRK13940 181 SKNVLIIGA-GQTGELLFRHVTALAPK----QIML----ANRTIEKAQKITSAFRNA------SAHYLSELPQLIKKADI 245 (414)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCC----EEEE----ECCCHHHHHHHHHHhcCC------eEecHHHHHHHhccCCE
Confidence 479999995 99999999999987752 3555 677777776666544211 12222345788999999
Q ss_pred EEEeCCcC
Q 015501 176 ALLIGAKP 183 (405)
Q Consensus 176 VIi~~g~~ 183 (405)
||.+-+.|
T Consensus 246 VI~aT~a~ 253 (414)
T PRK13940 246 IIAAVNVL 253 (414)
T ss_pred EEECcCCC
Confidence 99875543
No 331
>PRK05855 short chain dehydrogenase; Validated
Probab=93.64 E-value=0.62 Score=49.17 Aligned_cols=115 Identities=13% Similarity=0.063 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-c--Cccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I--NPYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~--~~~e---- 168 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++..+.++.... . ++.+. . .+.+
T Consensus 315 ~~~~lv~G~s~giG~~~a~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~Dv~~~~~~~~ 381 (582)
T PRK05855 315 GKLVVVTGAGSGIGRETALAFAREGA-----EVVA----SDIDEAAAERTAELIRAAG-A---VAHAYRVDVSDADAMEA 381 (582)
T ss_pred CCEEEEECCcCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---eEEEEEcCCCCHHHHHH
Confidence 47899999999999999999998775 2444 4566666665555554321 0 11111 1 1111
Q ss_pred -------ccCCCcEEEEeCCcCCCCC---Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 -------LFEDAEWALLIGAKPRGPG---MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 -------al~dADiVIi~~g~~~k~g---~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|...... .+.. ..+..|. .+.+.+.+.+.+. +..+.||+++--
T Consensus 382 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~g~iv~~sS~ 453 (582)
T PRK05855 382 FAEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVER-GTGGHIVNVASA 453 (582)
T ss_pred HHHHHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCcEEEEECCh
Confidence 1235799999887643211 1111 2234553 3344445555554 245777777643
No 332
>PRK08263 short chain dehydrogenase; Provisional
Probab=93.64 E-value=0.15 Score=48.85 Aligned_cols=25 Identities=8% Similarity=-0.133 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++|.|+||+|.+|++++..|++.+.
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~ 28 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD 28 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC
Confidence 5799999999999999999998764
No 333
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.61 E-value=0.26 Score=49.69 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|||+ |.+|++++..|+..|+
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGv 48 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGI 48 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 358999995 9999999999999886
No 334
>PRK07063 short chain dehydrogenase; Provisional
Probab=93.55 E-value=1.2 Score=42.13 Aligned_cols=47 Identities=21% Similarity=0.152 Sum_probs=34.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d 151 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++..+.++..
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~-----~vv~----~~r~~~~~~~~~~~~~~ 53 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA-----AVAL----ADLDAALAERAAAAIAR 53 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHh
Confidence 46899999999999999999998875 2444 45566666666655543
No 335
>PRK06125 short chain dehydrogenase; Provisional
Probab=93.53 E-value=1.7 Score=40.99 Aligned_cols=117 Identities=15% Similarity=0.062 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC-C-cceEEEecC-----ccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-L-LREVKIGIN-----PYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~-~-~~~v~i~~~-----~~e 168 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.++++....++...... . .....++.. ..+
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC-----HLHL----VARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAA 77 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 46899999999999999999998765 2444 355556555544444422100 0 001111100 012
Q ss_pred ccCCCcEEEEeCCcCC-CCC--Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 LFEDAEWALLIGAKPR-GPG--MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 al~dADiVIi~~g~~~-k~g--~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+...|++|..+|... .+- .+.. ..+..|.. +.+.+.+.+.+. ..+.|++++.
T Consensus 78 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~iss 140 (259)
T PRK06125 78 EAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKAR--GSGVIVNVIG 140 (259)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEecC
Confidence 3457899998876532 221 1111 22344433 344455555553 3466776664
No 336
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=93.50 E-value=1.1 Score=41.94 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=22.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++|.|+||+|.+|++++..|+..|.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~ 26 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA 26 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC
Confidence 5799999999999999999998765
No 337
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=93.49 E-value=1 Score=42.76 Aligned_cols=47 Identities=13% Similarity=0.048 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-----~vv~----~~~~~~~~~~~~~~~~ 55 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-----TIVF----NDINQELVDKGLAAYR 55 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHH
Confidence 346899999999999999999998774 2444 3555556655544443
No 338
>PRK06924 short chain dehydrogenase; Provisional
Probab=93.49 E-value=0.14 Score=48.14 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|++|.|+||+|.+|+.++..|++.+.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~ 26 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGT 26 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCC
Confidence 46899999999999999999998775
No 339
>PRK07576 short chain dehydrogenase; Provisional
Probab=93.45 E-value=0.82 Score=43.62 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=32.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.||.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 54 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGA-----NVAV----ASRSQEKVDAAVAQLQ 54 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 46899999999999999999998764 2443 3555555554444443
No 340
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=93.44 E-value=0.37 Score=48.59 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
|+||+|+||+|.+|..++..|...+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p 26 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHP 26 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCC
Confidence 5799999999999999999888654
No 341
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=93.43 E-value=0.33 Score=47.79 Aligned_cols=102 Identities=19% Similarity=0.147 Sum_probs=58.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-.+|+|+|+ |.+|..++..|...|. .+.+ .+++.+++.. +.++ .. ..+. ..+..+.++++|+
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G~-----~V~v----~~R~~~~~~~-~~~~-----g~-~~~~-~~~l~~~l~~aDi 212 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALGA-----RVFV----GARSSADLAR-ITEM-----GL-IPFP-LNKLEEKVAEIDI 212 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHH-HHHC-----CC-eeec-HHHHHHHhccCCE
Confidence 479999995 9999999999998664 2444 4565544321 1111 11 0111 1234567899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-CchhHHHHHHHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTNALICLK 234 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP~d~~t~~~~k 234 (405)
||.+. |. + ++ + . +.+... .+++++|.++ +|-.+--..+.+
T Consensus 213 Vint~--P~--~-----ii--~----~---~~l~~~-k~~aliIDlas~Pg~tdf~~Ak~ 253 (287)
T TIGR02853 213 VINTI--PA--L-----VL--T----A---DVLSKL-PKHAVIIDLASKPGGTDFEYAKK 253 (287)
T ss_pred EEECC--Ch--H-----Hh--C----H---HHHhcC-CCCeEEEEeCcCCCCCCHHHHHH
Confidence 99874 21 0 11 1 1 123333 4678888665 676542244433
No 342
>PRK06500 short chain dehydrogenase; Provisional
Probab=93.41 E-value=0.31 Score=45.48 Aligned_cols=26 Identities=12% Similarity=0.027 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~ 31 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA 31 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998774
No 343
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.38 E-value=0.73 Score=47.18 Aligned_cols=76 Identities=13% Similarity=0.238 Sum_probs=48.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHH--------Hhhh---hcCCCcceEEEec
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM--------ELED---SLFPLLREVKIGI 164 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~--------DL~d---~~~~~~~~v~i~~ 164 (405)
.++|+||| .|.||-.+|-.++..|. ++ +++|+++.+.+.+-. |+.. .. -..++.+.++
T Consensus 9 ~~~I~ViG-LGYVGLPlA~~fA~~G~-----~V----iG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~-v~~g~lraTt 77 (436)
T COG0677 9 SATIGVIG-LGYVGLPLAAAFASAGF-----KV----IGVDINQKKVDKLNRGESYIEEPDLDEVVKEA-VESGKLRATT 77 (436)
T ss_pred ceEEEEEc-cccccHHHHHHHHHcCC-----ce----EeEeCCHHHHHHHhCCcceeecCcHHHHHHHH-HhcCCceEec
Confidence 48999999 79999999999998875 11 235666555543210 1110 00 0113455554
Q ss_pred CcccccCCCcEEEEeCCcC
Q 015501 165 NPYELFEDAEWALLIGAKP 183 (405)
Q Consensus 165 ~~~eal~dADiVIi~~g~~ 183 (405)
+.+.++.||++|++.-.|
T Consensus 78 -d~~~l~~~dv~iI~VPTP 95 (436)
T COG0677 78 -DPEELKECDVFIICVPTP 95 (436)
T ss_pred -ChhhcccCCEEEEEecCC
Confidence 577888999999985444
No 344
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=93.32 E-value=0.19 Score=49.16 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=40.5
Q ss_pred EEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEEEeC
Q 015501 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIG 180 (405)
Q Consensus 101 IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVIi~~ 180 (405)
||| .|.+|..++..|+..+. ++.+ .|++.++.+... +. ......+..+++++||+||++.
T Consensus 1 ~IG-lG~mG~~mA~~L~~~G~-----~V~v----~dr~~~~~~~l~----~~------g~~~~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 1 FIG-LGNMGGPMAANLLKAGH-----PVRV----FDLFPDAVEEAV----AA------GAQAAASPAEAAEGADRVITML 60 (288)
T ss_pred CCc-ccHhHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHH----Hc------CCeecCCHHHHHhcCCEEEEeC
Confidence 589 59999999999998764 2444 466655554332 11 1223445667899999999873
No 345
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.32 E-value=0.53 Score=43.68 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=22.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.||.|+|+ |.+|+.++..|+..|+
T Consensus 20 s~VlviG~-gglGsevak~L~~~GV 43 (198)
T cd01485 20 AKVLIIGA-GALGAEIAKNLVLAGI 43 (198)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC
Confidence 69999995 8899999999999987
No 346
>PRK07062 short chain dehydrogenase; Provisional
Probab=93.30 E-value=1.6 Score=41.32 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+.+.|+||+|.+|.+++..|+..|. .+.+ .+++.++++....++.
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 53 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGA-----SVAI----CGRDEERLASAEARLR 53 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHH
Confidence 35899999999999999999998775 2444 4566666665555554
No 347
>PRK07074 short chain dehydrogenase; Provisional
Probab=93.28 E-value=1.7 Score=40.95 Aligned_cols=44 Identities=27% Similarity=0.230 Sum_probs=31.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.++.|+||+|.+|..++..|++.+. .+.+ .+++.+.++....++
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~-----~v~~----~~r~~~~~~~~~~~~ 46 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD-----RVLA----LDIDAAALAAFADAL 46 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHh
Confidence 4799999999999999999998764 2443 355555555444444
No 348
>PRK13243 glyoxylate reductase; Reviewed
Probab=93.27 E-value=0.2 Score=50.38 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=56.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|.||..+|..|...|+ .|.. +|+...... ..+ . . +. ..+..+.+++||+
T Consensus 150 gktvgIiG-~G~IG~~vA~~l~~~G~-----~V~~----~d~~~~~~~--~~~--~---~----~~-~~~l~ell~~aDi 207 (333)
T PRK13243 150 GKTIGIIG-FGRIGQAVARRAKGFGM-----RILY----YSRTRKPEA--EKE--L---G----AE-YRPLEELLRESDF 207 (333)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCCC-----EEEE----ECCCCChhh--HHH--c---C----CE-ecCHHHHHhhCCE
Confidence 37999999 59999999999987664 2332 344322211 111 1 1 11 1356788999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC--CchhHHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG--NPCNTNA 229 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt--NP~d~~t 229 (405)
|++.. |..+. +..++.+ +.+... ++++++|+++ ..+|.-+
T Consensus 208 V~l~l--P~t~~---------T~~~i~~--~~~~~m-k~ga~lIN~aRg~~vd~~a 249 (333)
T PRK13243 208 VSLHV--PLTKE---------TYHMINE--ERLKLM-KPTAILVNTARGKVVDTKA 249 (333)
T ss_pred EEEeC--CCChH---------HhhccCH--HHHhcC-CCCeEEEECcCchhcCHHH
Confidence 99873 32121 1122211 233333 5889999998 3455444
No 349
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=93.27 E-value=0.18 Score=52.07 Aligned_cols=73 Identities=25% Similarity=0.271 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+-.|+.|||| |-+|.-++..|...++. .|.+ .+++.++++..+.++. ..+.-..+..+.+.++|
T Consensus 177 ~~~~vlvIGA-Gem~~lva~~L~~~g~~----~i~I----aNRT~erA~~La~~~~-------~~~~~l~el~~~l~~~D 240 (414)
T COG0373 177 KDKKVLVIGA-GEMGELVAKHLAEKGVK----KITI----ANRTLERAEELAKKLG-------AEAVALEELLEALAEAD 240 (414)
T ss_pred ccCeEEEEcc-cHHHHHHHHHHHhCCCC----EEEE----EcCCHHHHHHHHHHhC-------CeeecHHHHHHhhhhCC
Confidence 3578999995 99999999999999873 3554 6888888877777665 12222345678999999
Q ss_pred EEEEeCCcC
Q 015501 175 WALLIGAKP 183 (405)
Q Consensus 175 iVIi~~g~~ 183 (405)
+||.+-+.|
T Consensus 241 vVissTsa~ 249 (414)
T COG0373 241 VVISSTSAP 249 (414)
T ss_pred EEEEecCCC
Confidence 999864443
No 350
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=93.26 E-value=0.44 Score=42.61 Aligned_cols=76 Identities=17% Similarity=0.043 Sum_probs=44.8
Q ss_pred CCEEEEEcC-CCchHHHHHHHHHhcccCCCCCceEEEeccccchh--h--hHHHHHHHhhhhcCCCcceEEEecCccccc
Q 015501 96 MVNIAVSGA-AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL--Q--ALEGVAMELEDSLFPLLREVKIGINPYELF 170 (405)
Q Consensus 96 ~~KI~IIGA-aG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~--~--~l~g~a~DL~d~~~~~~~~v~i~~~~~eal 170 (405)
-.||++||= -++|..+++..+..-|. .+.++.-.... . ..-..+.+.... ...+++++.+..+++
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~-------~~~~~~P~~~~~~~~~~~~~~~~~~~~~---~g~~i~~~~~~~e~l 71 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFGM-------EVVLIAPEGLRYPPDPEVLEKAKKNAKK---NGGKITITDDIEEAL 71 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTTS-------EEEEESSGGGGGSHHHHHHHHHHHHHHH---HTTEEEEESSHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcCC-------EEEEECCCcccCCCCHHHHHHHHHHHHH---hCCCeEEEeCHHHhc
Confidence 469999993 36899999988887654 23333222200 1 111112221111 124688888888999
Q ss_pred CCCcEEEEeCC
Q 015501 171 EDAEWALLIGA 181 (405)
Q Consensus 171 ~dADiVIi~~g 181 (405)
++||+|+...-
T Consensus 72 ~~aDvvy~~~~ 82 (158)
T PF00185_consen 72 KGADVVYTDRW 82 (158)
T ss_dssp TT-SEEEEESS
T ss_pred CCCCEEEEcCc
Confidence 99999988643
No 351
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=93.24 E-value=0.42 Score=47.66 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=40.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-+||+||| .|++|.+++..|...++ .+.+. .+...+.++... + + . +.. .+..+++++||+
T Consensus 3 ~kkIgiIG-~G~mG~AiA~~L~~sG~-----~Viv~---~~~~~~~~~~a~-~--~---G----v~~-~s~~ea~~~ADi 62 (314)
T TIGR00465 3 GKTVAIIG-YGSQGHAQALNLRDSGL-----NVIVG---LRKGGASWKKAT-E--D---G----FKV-GTVEEAIPQADL 62 (314)
T ss_pred cCEEEEEe-EcHHHHHHHHHHHHCCC-----eEEEE---ECcChhhHHHHH-H--C---C----CEE-CCHHHHHhcCCE
Confidence 46899999 59999999999998775 13221 122222222111 1 1 1 122 246678899999
Q ss_pred EEEeC
Q 015501 176 ALLIG 180 (405)
Q Consensus 176 VIi~~ 180 (405)
|+++.
T Consensus 63 VvLaV 67 (314)
T TIGR00465 63 IMNLL 67 (314)
T ss_pred EEEeC
Confidence 99873
No 352
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.22 E-value=0.23 Score=49.54 Aligned_cols=92 Identities=13% Similarity=0.172 Sum_probs=54.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+|+| .|.||..++..|...|+ .+.. +|+..+...+ .. ...-..+..+.+++||+
T Consensus 136 g~tvgIvG-~G~IG~~vA~~l~afG~-----~V~~----~~~~~~~~~~----~~--------~~~~~~~l~e~l~~aDv 193 (312)
T PRK15469 136 DFTIGILG-AGVLGSKVAQSLQTWGF-----PLRC----WSRSRKSWPG----VQ--------SFAGREELSAFLSQTRV 193 (312)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----EeCCCCCCCC----ce--------eecccccHHHHHhcCCE
Confidence 47999999 69999999999987664 2322 3433221110 00 00001245788999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|+++. |.. ..|..++. .+.+... ++++++||++-
T Consensus 194 vv~~l--Plt---------~~T~~li~--~~~l~~m-k~ga~lIN~aR 227 (312)
T PRK15469 194 LINLL--PNT---------PETVGIIN--QQLLEQL-PDGAYLLNLAR 227 (312)
T ss_pred EEECC--CCC---------HHHHHHhH--HHHHhcC-CCCcEEEECCC
Confidence 99873 221 12233332 2344554 58899999983
No 353
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.20 E-value=1.2 Score=43.88 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=52.0
Q ss_pred cchhHhhhhccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc-----------------hhhhHHHHH
Q 015501 84 LKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-----------------SLQALEGVA 146 (405)
Q Consensus 84 ~~~~~~~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~-----------------~~~~l~g~a 146 (405)
+-.|...++. ..||.|+|+ |.+|+.+|..|+..|+- .|.| +|.|. ...+++..+
T Consensus 9 ~G~eaq~kL~--~s~VLIvG~-gGLG~EiaKnLalaGVg----~itI--~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~ 79 (286)
T cd01491 9 LGHEAMKKLQ--KSNVLISGL-GGLGVEIAKNLILAGVK----SVTL--HDTKPCSWSDLSSQFYLREEDIGKNRAEASQ 79 (286)
T ss_pred cCHHHHHHHh--cCcEEEEcC-CHHHHHHHHHHHHcCCC----eEEE--EcCCccchhhcccCccCChHHhCHHHHHHHH
Confidence 4444443333 359999995 99999999999999872 2444 33332 122444444
Q ss_pred HHhhhhcCCCcceEEEec--CcccccCCCcEEEEeC
Q 015501 147 MELEDSLFPLLREVKIGI--NPYELFEDAEWALLIG 180 (405)
Q Consensus 147 ~DL~d~~~~~~~~v~i~~--~~~eal~dADiVIi~~ 180 (405)
..|.+.. |. .+++... .+.+.+.+.|+||.+.
T Consensus 80 ~~L~eLN-p~-V~V~~~~~~~~~~~l~~fdvVV~~~ 113 (286)
T cd01491 80 ARLAELN-PY-VPVTVSTGPLTTDELLKFQVVVLTD 113 (286)
T ss_pred HHHHHHC-CC-CEEEEEeccCCHHHHhcCCEEEEec
Confidence 4444443 32 2343332 2467889999998874
No 354
>PRK06179 short chain dehydrogenase; Provisional
Probab=93.20 E-value=0.66 Score=44.13 Aligned_cols=26 Identities=27% Similarity=0.128 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..+|.|+||+|.+|.+++..|+..|.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~ 29 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY 29 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC
Confidence 46899999999999999999998764
No 355
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=93.19 E-value=0.48 Score=47.25 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|+||+|+||+|.+|..+...|...+.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~ 27 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSD 27 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCC
Confidence 57999999999999999998888764
No 356
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=93.16 E-value=0.41 Score=46.74 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=51.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC-CCcEEE
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-DAEWAL 177 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-dADiVI 177 (405)
|.|.||+|.||+++...|...+. ++.+ +-++..+..... .. .+..-....+... ++|.||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh-----~v~i----ltR~~~~~~~~~---~~-------~v~~~~~~~~~~~~~~DavI 61 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH-----QVTI----LTRRPPKASQNL---HP-------NVTLWEGLADALTLGIDAVI 61 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC-----eEEE----EEcCCcchhhhc---Cc-------cccccchhhhcccCCCCEEE
Confidence 68999999999999999988764 3443 233333332111 10 1111111122222 799999
Q ss_pred EeCCcCC--CCC-Cchh-hhHHhhHHHHHHHHHHHHhh
Q 015501 178 LIGAKPR--GPG-MERA-GLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 178 i~~g~~~--k~g-~~r~-~ll~~N~~i~~~i~~~i~~~ 211 (405)
..+|.|- +.+ .++. .+..--+..-+.+.+.|.+.
T Consensus 62 NLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~ 99 (297)
T COG1090 62 NLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAAS 99 (297)
T ss_pred ECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 9988762 222 2222 23333345556666666654
No 357
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=93.12 E-value=1 Score=43.61 Aligned_cols=141 Identities=19% Similarity=0.189 Sum_probs=78.3
Q ss_pred CCEEEEEcCCCc--------------------hHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHH-HHHhhhhcC
Q 015501 96 MVNIAVSGAAGM--------------------IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV-AMELEDSLF 154 (405)
Q Consensus 96 ~~KI~IIGAaG~--------------------VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~-a~DL~d~~~ 154 (405)
+|||+|-|| |+ =|+++|...+..|. | ++| .|++.+-.+-. -..++|+
T Consensus 1 ~mkv~vyga-gnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGH---D--VVL----aePn~d~~dd~~w~~vedA-- 68 (340)
T COG4007 1 MMKVAVYGA-GNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGH---D--VVL----AEPNRDIMDDEHWKRVEDA-- 68 (340)
T ss_pred CceEEEEcC-CccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCC---c--EEe----ecCCccccCHHHHHHHHhc--
Confidence 578888885 64 26677777777553 3 665 45543332211 1222332
Q ss_pred CCcceEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHH
Q 015501 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK 234 (405)
Q Consensus 155 ~~~~~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k 234 (405)
.+++++|+.++.+.+++.|+.-- .| ..+..|.++|...+.+- ++ +.|.|.+-...++.
T Consensus 69 ----GV~vv~dD~eaa~~~Ei~VLFTP----FG-------k~T~~Iarei~~hvpEg----AV---icnTCT~sp~vLy~ 126 (340)
T COG4007 69 ----GVEVVSDDAEAAEHGEIHVLFTP----FG-------KATFGIAREILEHVPEG----AV---ICNTCTVSPVVLYY 126 (340)
T ss_pred ----CcEEecCchhhhhcceEEEEecc----cc-------hhhHHHHHHHHhhCcCC----cE---ecccccCchhHHHH
Confidence 47888999999999999876411 11 23467777777665542 33 45555332222211
Q ss_pred -HCCCCC--CCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCC
Q 015501 235 -NAPSIP--AKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHST 281 (405)
Q Consensus 235 -~s~~~~--~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~ 281 (405)
.-+.+. ++-+|..++ .=.||+-..-++.|++|.++.
T Consensus 127 ~LE~~Lr~kR~dVGvssm-----------HPAgvPGtp~h~~yviagr~t 165 (340)
T COG4007 127 SLEGELRTKREDVGVSSM-----------HPAGVPGTPQHGHYVIAGRST 165 (340)
T ss_pred HhhhhhcCchhhcCcccc-----------CCCCCCCCCCCceEEEeccCC
Confidence 111222 233665443 123566566666788887765
No 358
>PRK08589 short chain dehydrogenase; Validated
Probab=93.11 E-value=1.7 Score=41.53 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=32.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++ +.++..+.++.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~-----~vi~----~~r~-~~~~~~~~~~~ 50 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA-----YVLA----VDIA-EAVSETVDKIK 50 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCc-HHHHHHHHHHH
Confidence 46899999999999999999998775 2444 3455 45555555554
No 359
>PRK08324 short chain dehydrogenase; Validated
Probab=93.10 E-value=1.3 Score=48.80 Aligned_cols=44 Identities=34% Similarity=0.320 Sum_probs=32.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
++|.|+||+|.||..++..|+..|. .|.+ .+++.+.++....++
T Consensus 423 k~vLVTGasggIG~~la~~L~~~Ga-----~Vvl----~~r~~~~~~~~~~~l 466 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLAAEGA-----CVVL----ADLDEEAAEAAAAEL 466 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcC-----EEEE----EeCCHHHHHHHHHHH
Confidence 6899999999999999999998764 2444 456656655444444
No 360
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.09 E-value=0.39 Score=46.08 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||+|+|+ |.+|+.++..|+..|+
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gv 56 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGV 56 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999886
No 361
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=93.08 E-value=0.24 Score=48.51 Aligned_cols=70 Identities=17% Similarity=0.065 Sum_probs=47.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-Ee--cCcccccCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IG--INPYELFED 172 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~--~~~~eal~d 172 (405)
..++.|+|| |.+|.++++.|...|.- .|.+ .+++.++++..+.++.... .+. +. .+..+.+.+
T Consensus 125 ~k~vlvlGa-GGaarai~~aL~~~G~~----~i~I----~nRt~~ka~~La~~~~~~~-----~~~~~~~~~~~~~~~~~ 190 (282)
T TIGR01809 125 GFRGLVIGA-GGTSRAAVYALASLGVT----DITV----INRNPDKLSRLVDLGVQVG-----VITRLEGDSGGLAIEKA 190 (282)
T ss_pred CceEEEEcC-cHHHHHHHHHHHHcCCC----eEEE----EeCCHHHHHHHHHHhhhcC-----cceeccchhhhhhcccC
Confidence 468999995 99999999999987752 3555 5788788887776653221 111 11 112355688
Q ss_pred CcEEEEe
Q 015501 173 AEWALLI 179 (405)
Q Consensus 173 ADiVIi~ 179 (405)
+|+||.+
T Consensus 191 ~DiVIna 197 (282)
T TIGR01809 191 AEVLVST 197 (282)
T ss_pred CCEEEEC
Confidence 9999986
No 362
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=93.04 E-value=1.1 Score=41.76 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|++++..|++.+.
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~ 31 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA 31 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 46899999999999999999998764
No 363
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=93.04 E-value=0.09 Score=51.45 Aligned_cols=134 Identities=14% Similarity=0.098 Sum_probs=77.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc----ccCCCCCceEEEeccccc--hh--hhHHHHHHHhhhhcCCCcceEEEecCcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAG----EVLGPDQPIALKLLGSER--SL--QALEGVAMELEDSLFPLLREVKIGINPY 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~----~~~~~d~~i~L~l~~~d~--~~--~~l~g~a~DL~d~~~~~~~~v~i~~~~~ 167 (405)
-.||.|.|| |..|..++..|... |+-.++..-.+.++|.+- .. ..+......+.+.. . . ....+..
T Consensus 25 d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~-~---~-~~~~~L~ 98 (279)
T cd05312 25 DQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD-E---E-KEGKSLL 98 (279)
T ss_pred hcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc-C---c-ccCCCHH
Confidence 379999995 99999999888875 541111011233433321 01 11222222222211 0 0 1235688
Q ss_pred cccC--CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch---hHHHHHHHHHCCCCCCC
Q 015501 168 ELFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPSIPAK 242 (405)
Q Consensus 168 eal~--dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~---d~~t~~~~k~s~~~~~k 242 (405)
|+++ ++|++|=+.+. +|. +=+++.+.|.+++ ++.+|.-.+||. ++...-+++.+.+ +.
T Consensus 99 e~i~~v~ptvlIG~S~~---~g~-----------ft~evv~~Ma~~~-~~PIIFaLSNPt~~~E~~pe~a~~~t~G--~a 161 (279)
T cd05312 99 EVVKAVKPTVLIGLSGV---GGA-----------FTEEVVRAMAKSN-ERPIIFALSNPTSKAECTAEDAYKWTDG--RA 161 (279)
T ss_pred HHHHhcCCCEEEEeCCC---CCC-----------CCHHHHHHHHhcC-CCCEEEECCCcCCccccCHHHHHHhhcC--CE
Confidence 9999 99998754332 231 2245667777876 889999999997 4555556665432 35
Q ss_pred ceeecchhhH
Q 015501 243 NFHALTRLDE 252 (405)
Q Consensus 243 ~ig~gt~LDs 252 (405)
+|++|+-.+.
T Consensus 162 i~ATGsPf~p 171 (279)
T cd05312 162 LFASGSPFPP 171 (279)
T ss_pred EEEeCCCCCC
Confidence 7888875554
No 364
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.03 E-value=0.8 Score=42.44 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=31.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
..+|.|+||+|.+|++++..|++.|. .+.+ .+++.+.+.....++
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~ 49 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA-----QVCI----NSRNENKLKRMKKTL 49 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHH
Confidence 46899999999999999999998775 2443 345555554333333
No 365
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=93.02 E-value=1.3 Score=42.35 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=33.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 55 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA-----KVAI----LDRNQEKAEAVVAEIK 55 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 46899999999999999999998775 2444 3555555555555543
No 366
>PRK06914 short chain dehydrogenase; Provisional
Probab=93.01 E-value=1.1 Score=42.90 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+++.|+||+|.+|.+++..|+..|.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~ 28 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY 28 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC
Confidence 4689999999999999999998764
No 367
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=93.00 E-value=1.7 Score=40.98 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~ 33 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA 33 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998774
No 368
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=92.99 E-value=1.2 Score=41.88 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-----~vv~----~~r~~~~~~~~~~~l~ 56 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-----SVVV----SDINADAANHVVDEIQ 56 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHH
Confidence 357999999999999999999998774 2433 3455555555555554
No 369
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.97 E-value=1 Score=42.00 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+..+|.|+||+|.||++++..|++.+.
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l~~~g~ 31 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRLAKEGS 31 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCC
Confidence 357999999999999999999998775
No 370
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.96 E-value=0.47 Score=44.39 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.++|.|+||+|.+|.+++..|+..|.
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G~ 30 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREGA 30 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 346899999999999999999998774
No 371
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=92.94 E-value=0.41 Score=48.32 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=21.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+||+|+||+|.+|..++..|...+.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~ 25 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE 25 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC
Confidence 5899999999999999999886543
No 372
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=92.89 E-value=1.1 Score=41.74 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+++|.|+||+|.+|+.++..|+..+.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~ 27 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGW 27 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 35899999999999999999998764
No 373
>PRK07574 formate dehydrogenase; Provisional
Probab=92.87 E-value=0.42 Score=49.02 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=56.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
++|+||| .|.||..++..|...|+ .+. . +|+.....+ ...++ .++...+..+.++.||+|
T Consensus 193 ktVGIvG-~G~IG~~vA~~l~~fG~-----~V~--~--~dr~~~~~~-~~~~~---------g~~~~~~l~ell~~aDvV 252 (385)
T PRK07574 193 MTVGIVG-AGRIGLAVLRRLKPFDV-----KLH--Y--TDRHRLPEE-VEQEL---------GLTYHVSFDSLVSVCDVV 252 (385)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EEE--E--ECCCCCchh-hHhhc---------CceecCCHHHHhhcCCEE
Confidence 7899999 59999999999887554 232 2 344321111 11111 122224567889999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--chhHHH
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNA 229 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN--P~d~~t 229 (405)
++.. |..+ .+..++. .+.+... ++++++||++- .+|.-+
T Consensus 253 ~l~l--Plt~---------~T~~li~--~~~l~~m-k~ga~lIN~aRG~iVDe~A 293 (385)
T PRK07574 253 TIHC--PLHP---------ETEHLFD--ADVLSRM-KRGSYLVNTARGKIVDRDA 293 (385)
T ss_pred EEcC--CCCH---------HHHHHhC--HHHHhcC-CCCcEEEECCCCchhhHHH
Confidence 9873 2211 1222221 2333443 47899999983 444443
No 374
>PRK09134 short chain dehydrogenase; Provisional
Probab=92.86 E-value=1.2 Score=41.97 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..+++.|+||+|.||.+++..|+..+.
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~ 34 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGF 34 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 456899999999999999999998774
No 375
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.82 E-value=0.39 Score=48.41 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|+|| |.+|+.++..|+..|+
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGv 48 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGV 48 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999886
No 376
>PRK05872 short chain dehydrogenase; Provisional
Probab=92.82 E-value=1.7 Score=42.27 Aligned_cols=46 Identities=30% Similarity=0.281 Sum_probs=34.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
..++.|+||+|.+|..++..|+..|. .+.+ .+++.+.++..+.++.
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~l~~~~~~l~ 54 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA-----KLAL----VDLEEAELAALAAELG 54 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhc
Confidence 46899999999999999999998875 2444 4566666666655553
No 377
>PRK05693 short chain dehydrogenase; Provisional
Probab=92.80 E-value=1.8 Score=41.37 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|+++.|+||+|.+|.+++..|+..|.
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~ 26 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGY 26 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998764
No 378
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=92.79 E-value=1.7 Score=40.57 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.++|.|+||+|.||.+++..|+..|.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~ 30 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA 30 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC
Confidence 357899999999999999999998775
No 379
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.78 E-value=1.7 Score=40.47 Aligned_cols=45 Identities=22% Similarity=0.194 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
..++.|+||+|.+|..++..|+..|. .+.+ .+++.++++....++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~-----~vi~----~~r~~~~~~~~~~~~ 49 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGA-----KLAL----IDLNQEKLEEAVAEC 49 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHH
Confidence 46899999999999999999998764 2433 355555555444444
No 380
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=92.69 E-value=0.56 Score=45.49 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+.+++.|+|+ |.+|..++..|+..+. .+.+ .+++.++++..+.++.... .+.....+...+.++|
T Consensus 116 ~~k~vliiGa-Gg~g~aia~~L~~~g~-----~v~v----~~R~~~~~~~la~~~~~~~-----~~~~~~~~~~~~~~~D 180 (270)
T TIGR00507 116 PNQRVLIIGA-GGAARAVALPLLKADC-----NVII----ANRTVSKAEELAERFQRYG-----EIQAFSMDELPLHRVD 180 (270)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHhhcC-----ceEEechhhhcccCcc
Confidence 3578999995 9999999999998653 2444 4667677776666554311 1122222233456899
Q ss_pred EEEEeCC
Q 015501 175 WALLIGA 181 (405)
Q Consensus 175 iVIi~~g 181 (405)
+||.+.+
T Consensus 181 ivInatp 187 (270)
T TIGR00507 181 LIINATS 187 (270)
T ss_pred EEEECCC
Confidence 9998744
No 381
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=92.69 E-value=0.25 Score=46.92 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME 148 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D 148 (405)
+.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++....+
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~ 49 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA-----RVAV----LERSAEKLASLRQR 49 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHH
Confidence 346899999999999999999998775 2444 45555555544433
No 382
>PRK06701 short chain dehydrogenase; Provisional
Probab=92.65 E-value=1.8 Score=42.10 Aligned_cols=48 Identities=19% Similarity=0.059 Sum_probs=35.1
Q ss_pred cceeeEEeeccchhHh--hhhc--cCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 74 CYGVFCLTYDLKAEEE--TKSW--KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 74 ~~~~~~~~~~~~~~~~--~~~~--~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+-|+--++|-+++-+. .+.+ .+.++|.|+||+|.+|.+++..|+..|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~iLItGasggIG~~la~~l~~~G~ 71 (290)
T PRK06701 20 QPGIESLMNPLPQFEAPNYKGSGKLKGKVALITGGDSGIGRAVAVLFAKEGA 71 (290)
T ss_pred CcChhhhCCcccCCCccccccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 3477777887766333 1222 2347899999999999999999998764
No 383
>PRK08862 short chain dehydrogenase; Provisional
Probab=92.61 E-value=2.2 Score=40.00 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=34.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+.+.|+||++.+|..++..|++.|. .+.+ .+++.++++....++.
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~l~~~~~~i~ 50 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA-----TLIL----CDQDQSALKDTYEQCS 50 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHH
Confidence 46899999999999999999999875 2444 4566677766655543
No 384
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=92.56 E-value=0.21 Score=50.85 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=43.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecC----cccccCCCc
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN----PYELFEDAE 174 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~----~~eal~dAD 174 (405)
|.|+|| |.||+.++..|++..-+. .+.+ .|++.++++..+.++.. .....+.+... ..+.++++|
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~---~v~v----a~r~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~l~~~~~~~d 69 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFE---EVTV----ADRNPEKAERLAEKLLG---DRVEAVQVDVNDPESLAELLRGCD 69 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE----EEEE----EESSHHHHHHHHT--TT---TTEEEEE--TTTHHHHHHHHTTSS
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCC---cEEE----EECCHHHHHHHHhhccc---cceeEEEEecCCHHHHHHHHhcCC
Confidence 789997 999999999999876432 2444 67887887766654311 11112222222 245789999
Q ss_pred EEEEeCCc
Q 015501 175 WALLIGAK 182 (405)
Q Consensus 175 iVIi~~g~ 182 (405)
+||.+.+.
T Consensus 70 vVin~~gp 77 (386)
T PF03435_consen 70 VVINCAGP 77 (386)
T ss_dssp EEEE-SSG
T ss_pred EEEECCcc
Confidence 99998663
No 385
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=92.49 E-value=1.7 Score=41.90 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=24.9
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+..+..||.|||| |.+|+.++..|+..|+
T Consensus 7 ~~~~~~~V~vvG~-GGlGs~v~~~Lar~G~ 35 (244)
T TIGR03736 7 LLSRPVSVVLVGA-GGTGSQVIAGLARLHH 35 (244)
T ss_pred HHhCCCeEEEEcC-ChHHHHHHHHHHHccc
Confidence 4467899999995 9999999999998763
No 386
>PRK07775 short chain dehydrogenase; Provisional
Probab=92.44 E-value=1.8 Score=41.49 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++.+.|+||+|.+|.+++..|+..|.
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G~ 35 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAGF 35 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
No 387
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=92.43 E-value=0.96 Score=45.67 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH-hhhhcCCCcceEEEecCcccccCCCcEEEEe
Q 015501 109 ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLFPLLREVKIGINPYELFEDAEWALLI 179 (405)
Q Consensus 109 Gs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D-L~d~~~~~~~~v~i~~~~~eal~dADiVIi~ 179 (405)
|..+|..|+..|. +|.+ .|++++.++....+ +.+ ..+++.++..+++++||+||++
T Consensus 32 G~~MA~~La~aG~-----~V~v----~Dr~~~~l~~~~~~~l~~------~Gi~~asd~~eaa~~ADvVIla 88 (342)
T PRK12557 32 GSRMAIEFAEAGH-----DVVL----AEPNRSILSEELWKKVED------AGVKVVSDDAEAAKHGEIHILF 88 (342)
T ss_pred HHHHHHHHHhCCC-----eEEE----EECCHHHhhHHHHHHHHH------CCCEEeCCHHHHHhCCCEEEEE
Confidence 6778888887663 3544 45555533221111 211 1244556777889999999987
No 388
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=92.43 E-value=0.98 Score=43.71 Aligned_cols=108 Identities=18% Similarity=0.102 Sum_probs=57.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch-hhhHHHHHHHhhhhcCCCcceEEE-ec--Ccc----cc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKI-GI--NPY----EL 169 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~-~~~l~g~a~DL~d~~~~~~~~v~i-~~--~~~----ea 169 (405)
||.|+||+|++|..++..|+..+. .+.+ + ++. ....+ ...++.+. . .+.. .. .+. ++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~-----~V~~--~--~~~~~~~~~-~~~~~~~~--~---~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH-----EVVV--L--DNLSNGSPE-ALKRGERI--T---RVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC-----eEEE--E--eCCCccchh-hhhhhccc--c---ceEEEECCCCCHHHHHHH
Confidence 689999999999999999998764 2433 1 211 11111 11111110 0 1111 11 111 22
Q ss_pred cC--CCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 170 FE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 170 l~--dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
++ +.|+||.+++....+ ..+....+..|+.....+.+.+.+.. . ..++.++
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~~v~~s 120 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTG-V-KKFIFSS 120 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcC-C-CEEEEec
Confidence 32 689999887753211 11233456678888888888777752 2 3444444
No 389
>PRK08818 prephenate dehydrogenase; Provisional
Probab=92.32 E-value=0.77 Score=46.90 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=37.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
..||+|||.+|-||..++..|.... +. .|. ++|++ |.. ..+..+.+++||+
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~--~~--~V~----g~D~~------------d~~---------~~~~~~~v~~aDl 54 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM--QL--EVI----GHDPA------------DPG---------SLDPATLLQRADV 54 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC--CC--EEE----EEcCC------------ccc---------cCCHHHHhcCCCE
Confidence 4699999955999999999998751 21 232 24442 110 1234677899999
Q ss_pred EEEeC
Q 015501 176 ALLIG 180 (405)
Q Consensus 176 VIi~~ 180 (405)
||++.
T Consensus 55 Vilav 59 (370)
T PRK08818 55 LIFSA 59 (370)
T ss_pred EEEeC
Confidence 99983
No 390
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=92.32 E-value=1.1 Score=42.32 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.++|.|+||+|.+|..++..|+..|.
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~ 40 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA 40 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 357899999999999999999998775
No 391
>PRK08264 short chain dehydrogenase; Validated
Probab=92.30 E-value=1.2 Score=41.30 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+..+|.|+||+|.+|++++..|++.+.
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~ 31 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGA 31 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCc
Confidence 346899999999999999999998764
No 392
>PRK08605 D-lactate dehydrogenase; Validated
Probab=92.28 E-value=0.27 Score=49.31 Aligned_cols=63 Identities=22% Similarity=0.142 Sum_probs=38.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-+||+||| .|.||..++..|+.. ++- .+. . .|++.... .... +....+..+.+++||+
T Consensus 146 g~~VgIIG-~G~IG~~vA~~L~~~--~g~--~V~--~--~d~~~~~~------~~~~-------~~~~~~l~ell~~aDv 203 (332)
T PRK08605 146 DLKVAVIG-TGRIGLAVAKIFAKG--YGS--DVV--A--YDPFPNAK------AATY-------VDYKDTIEEAVEGADI 203 (332)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhc--CCC--EEE--E--ECCCccHh------HHhh-------ccccCCHHHHHHhCCE
Confidence 47999999 599999999998532 221 232 2 34432221 0000 1122356788999999
Q ss_pred EEEeC
Q 015501 176 ALLIG 180 (405)
Q Consensus 176 VIi~~ 180 (405)
|+++.
T Consensus 204 Ivl~l 208 (332)
T PRK08605 204 VTLHM 208 (332)
T ss_pred EEEeC
Confidence 99873
No 393
>PRK06046 alanine dehydrogenase; Validated
Probab=92.28 E-value=0.45 Score=47.60 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
...+|+||| +|..|...+..+....-+ +.+.+ .|++.++++..+.++.+.. + .++....+..+++. +|
T Consensus 128 ~~~~vgiiG-~G~qa~~h~~al~~~~~i---~~v~v----~~r~~~~~~~~~~~~~~~~-~--~~v~~~~~~~~~l~-aD 195 (326)
T PRK06046 128 DSKVVGIIG-AGNQARTQLLALSEVFDL---EEVRV----YDRTKSSAEKFVERMSSVV-G--CDVTVAEDIEEACD-CD 195 (326)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhhCCc---eEEEE----ECCCHHHHHHHHHHHHhhc-C--ceEEEeCCHHHHhh-CC
Confidence 468999999 599999988888753222 23444 5677777777776665321 2 23455555566676 99
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+|+++
T Consensus 196 iVv~a 200 (326)
T PRK06046 196 ILVTT 200 (326)
T ss_pred EEEEe
Confidence 99875
No 394
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.22 E-value=0.58 Score=48.44 Aligned_cols=91 Identities=13% Similarity=0.085 Sum_probs=56.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.-.+|+|+|+ |.||..++..+...|. .+.+ +|+++.+++ .+.++ ++ .+ ....++++++|
T Consensus 201 ~GktVvViG~-G~IG~~va~~ak~~Ga-----~ViV----~d~d~~R~~-~A~~~-----G~--~~---~~~~e~v~~aD 259 (413)
T cd00401 201 AGKVAVVAGY-GDVGKGCAQSLRGQGA-----RVIV----TEVDPICAL-QAAME-----GY--EV---MTMEEAVKEGD 259 (413)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE----EECChhhHH-HHHhc-----CC--EE---ccHHHHHcCCC
Confidence 3579999995 9999999998887765 2433 355555544 33221 11 11 12347788999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+||.+.|. ..++..- .+... .+++++++++.+
T Consensus 260 VVI~atG~---------------~~~i~~~--~l~~m-k~GgilvnvG~~ 291 (413)
T cd00401 260 IFVTTTGN---------------KDIITGE--HFEQM-KDGAIVCNIGHF 291 (413)
T ss_pred EEEECCCC---------------HHHHHHH--HHhcC-CCCcEEEEeCCC
Confidence 99987552 1222221 13333 478899999975
No 395
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=92.22 E-value=0.68 Score=49.94 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHH------HHHHHhhhhcCCCc-ceEEEecCcc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE------GVAMELEDSLFPLL-REVKIGINPY 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~------g~a~DL~d~~~~~~-~~v~i~~~~~ 167 (405)
+..||+|+| .|.+|++++..|+..|+-. |. .++.|.....+. ..+.++.... ... -+.+...+..
T Consensus 128 R~akVlVlG-~Gg~~s~lv~sL~~sG~~~----I~--~vd~D~v~SNlnRIgEl~e~A~~~n~~v-~v~~i~~~~~~dl~ 199 (637)
T TIGR03693 128 RNAKILAAG-SGDFLTKLVRSLIDSGFPR----FH--AIVTDAEEHALDRIHELAEIAEETDDAL-LVQEIDFAEDQHLH 199 (637)
T ss_pred hcccEEEEe-cCchHHHHHHHHHhcCCCc----EE--EEeccccchhhhHHHHHHHHHHHhCCCC-ceEeccCCcchhHH
Confidence 468999999 6999999999999999842 43 333444322222 2233311110 000 0111223467
Q ss_pred cccCCCcEEEEeCCcC
Q 015501 168 ELFEDAEWALLIGAKP 183 (405)
Q Consensus 168 eal~dADiVIi~~g~~ 183 (405)
+.+++.|+||.++..+
T Consensus 200 ev~~~~DiVi~vsDdy 215 (637)
T TIGR03693 200 EAFEPADWVLYVSDNG 215 (637)
T ss_pred HhhcCCcEEEEECCCC
Confidence 8999999999986643
No 396
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.17 E-value=0.6 Score=44.73 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gv 48 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGV 48 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999886
No 397
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=92.15 E-value=2.1 Score=40.61 Aligned_cols=47 Identities=21% Similarity=0.374 Sum_probs=33.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||++.||.+++..|++.|. .+.+. ..++.+.++..+.++.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~-----~v~~~---~~~~~~~~~~~~~~~~ 54 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGV-----NIAFT---YNSNVEEANKIAEDLE 54 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE---cCCCHHHHHHHHHHHH
Confidence 46899999999999999999998775 24431 2334455665555554
No 398
>PRK08226 short chain dehydrogenase; Provisional
Probab=92.12 E-value=1.2 Score=42.05 Aligned_cols=26 Identities=15% Similarity=0.048 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~ 31 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGA 31 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 47899999999999999999998775
No 399
>PRK08628 short chain dehydrogenase; Provisional
Probab=92.08 E-value=2.8 Score=39.36 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..+|.|+||+|.+|.+++..|+..|.
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~ 32 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGA 32 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC
Confidence 35899999999999999999998875
No 400
>PRK12743 oxidoreductase; Provisional
Probab=92.08 E-value=3.1 Score=39.25 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+|.|+||+|.+|.+++..|+..|.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~ 27 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF 27 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999999775
No 401
>PLN03139 formate dehydrogenase; Provisional
Probab=92.05 E-value=0.56 Score=48.15 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|.||..++..|...|+ .+. . +|+.....+ ...++ .+....+..+.+++||+
T Consensus 199 gktVGIVG-~G~IG~~vA~~L~afG~-----~V~--~--~d~~~~~~~-~~~~~---------g~~~~~~l~ell~~sDv 258 (386)
T PLN03139 199 GKTVGTVG-AGRIGRLLLQRLKPFNC-----NLL--Y--HDRLKMDPE-LEKET---------GAKFEEDLDAMLPKCDV 258 (386)
T ss_pred CCEEEEEe-ecHHHHHHHHHHHHCCC-----EEE--E--ECCCCcchh-hHhhc---------CceecCCHHHHHhhCCE
Confidence 37999999 59999999999987554 232 2 344321111 11110 11122356788899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--chhHHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNA 229 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN--P~d~~t 229 (405)
|++.. |..+ .+..++. .+.+... ++++++||++- .+|.-+
T Consensus 259 V~l~l--Plt~---------~T~~li~--~~~l~~m-k~ga~lIN~aRG~iVDe~A 300 (386)
T PLN03139 259 VVINT--PLTE---------KTRGMFN--KERIAKM-KKGVLIVNNARGAIMDTQA 300 (386)
T ss_pred EEEeC--CCCH---------HHHHHhC--HHHHhhC-CCCeEEEECCCCchhhHHH
Confidence 99873 3211 1222221 2344444 58899999983 444433
No 402
>PRK07201 short chain dehydrogenase; Provisional
Probab=92.05 E-value=1.4 Score=47.66 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=34.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 416 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGA-----TVFL----VARNGEALDELVAEIR 416 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHH
Confidence 46899999999999999999998774 2444 4566666665555553
No 403
>PRK05599 hypothetical protein; Provisional
Probab=92.04 E-value=1.6 Score=41.25 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=62.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc--ceEEEec---------C
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGI---------N 165 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~--~~v~i~~---------~ 165 (405)
|.+.|+||++.+|..++..|++ +. .+.+ .+++.++++..+.++........ ....++. .
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g~-----~Vil----~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 70 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-GE-----DVVL----AARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQ 70 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-CC-----EEEE----EeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHH
Confidence 4588999999999999999984 42 2444 45666777777766654320100 0111111 0
Q ss_pred cccccCCCcEEEEeCCcCCCCC---Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 166 PYELFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~k~g---~~r---~~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
..+.+..-|++|..+|...... .+. .+....|. .+.+.+.+.+.+. +.++.||+++.-
T Consensus 71 ~~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-~~~g~Iv~isS~ 138 (246)
T PRK05599 71 TQELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQ-TAPAAIVAFSSI 138 (246)
T ss_pred HHHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhc-CCCCEEEEEecc
Confidence 1223356899998777532111 111 11222232 2233444556553 235778877754
No 404
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=92.03 E-value=0.75 Score=46.28 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+||+|+||+|.+|..++..|...+.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~ 25 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPY 25 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC
Confidence 5899999999999999998877654
No 405
>PRK06153 hypothetical protein; Provisional
Probab=92.02 E-value=0.29 Score=50.02 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=32.0
Q ss_pred CcceeeEEeeccchhHh----hhhccCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 73 DCYGVFCLTYDLKAEEE----TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 73 ~~~~~~~~~~~~~~~~~----~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.-+||+-.=.+..-.. .+.+ +..||+|||+ |.+|+.++..|+..|+
T Consensus 150 ~~~svf~y~dt~s~R~~i~~~q~kL-~~~~VaIVG~-GG~GS~Va~~LAR~GV 200 (393)
T PRK06153 150 EEDSVFNYPDTASSRAGIGALSAKL-EGQRIAIIGL-GGTGSYILDLVAKTPV 200 (393)
T ss_pred ccCCceehhhhhccccChHHHHHHH-hhCcEEEEcC-CccHHHHHHHHHHcCC
Confidence 33578875433332211 2222 3579999995 9999999999999987
No 406
>PRK07060 short chain dehydrogenase; Provisional
Probab=91.99 E-value=0.58 Score=43.55 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|.+++..|+..+.
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~ 34 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGA 34 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCC
Confidence 46899999999999999999998764
No 407
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=91.96 E-value=2.1 Score=42.02 Aligned_cols=108 Identities=18% Similarity=0.083 Sum_probs=55.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhh-hHHHHHHHhhhhcCC---Cc-ceEEEecCc------
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDSLFP---LL-REVKIGINP------ 166 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~-~l~g~a~DL~d~~~~---~~-~~v~i~~~~------ 166 (405)
+|.|+||+|++|++++..|+..+... .|.. +..+.+.+ ..+.....+...... .. .++.+...+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~---~V~~--l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 75 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQA---KVIC--LVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRL 75 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCC---EEEE--EEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccC
Confidence 58899999999999999999876211 1322 11121111 111111111111000 00 123332221
Q ss_pred -------ccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhh
Q 015501 167 -------YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 167 -------~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~ 211 (405)
.+...++|+||.+++... ......++...|..-...+.+.+.+.
T Consensus 76 gl~~~~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~ 126 (367)
T TIGR01746 76 GLSDAEWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASG 126 (367)
T ss_pred CcCHHHHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhC
Confidence 223468999998876432 12223344567777777777766664
No 408
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=91.86 E-value=0.5 Score=46.19 Aligned_cols=98 Identities=17% Similarity=0.232 Sum_probs=51.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||.|+||+|++|+++...|...+. ++.. .++. -.|+.|.. .+ ....++. ..|+|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~-----~v~~----~~r~-------~~dl~d~~-~~-------~~~~~~~-~pd~V 55 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY-----EVIA----TSRS-------DLDLTDPE-AV-------AKLLEAF-KPDVV 55 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE-----EEEE----ESTT-------CS-TTSHH-HH-------HHHHHHH---SEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC-----EEEE----eCch-------hcCCCCHH-HH-------HHHHHHh-CCCeE
Confidence 7999999999999999999987653 1221 1111 11111110 00 0011222 47899
Q ss_pred EEeCCcCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 177 LLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 177 Ii~~g~~~k~g--~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
|.+++...-.. .+.......|......+++.+.+. ++++|-+|
T Consensus 56 in~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~---~~~li~~S 100 (286)
T PF04321_consen 56 INCAAYTNVDACEKNPEEAYAINVDATKNLAEACKER---GARLIHIS 100 (286)
T ss_dssp EE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHC---T-EEEEEE
T ss_pred eccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHc---CCcEEEee
Confidence 98876532111 123345567888888888888874 46666665
No 409
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=91.83 E-value=0.14 Score=49.38 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
||.|+||+|++|++++..|++.+.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~ 24 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV 24 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC
Confidence 589999999999999999998764
No 410
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=91.82 E-value=0.8 Score=44.41 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=42.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC-cceEEEecCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~dAD 174 (405)
|+||+|.||+|.+|..+...+.+.+-+ ++.-. +|+...... -.|..... .. .-.+-++.+......++|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~----~L~aa---~~~~~~~~~--g~d~ge~~-g~~~~gv~v~~~~~~~~~~~D 71 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDL----ELVAA---FDRPGSLSL--GSDAGELA-GLGLLGVPVTDDLLLVKADAD 71 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCc----eEEEE---EecCCcccc--ccchhhhc-cccccCceeecchhhcccCCC
Confidence 789999999999999999998876532 12211 233222111 11222111 11 123455556677888999
Q ss_pred EEE
Q 015501 175 WAL 177 (405)
Q Consensus 175 iVI 177 (405)
++|
T Consensus 72 V~I 74 (266)
T COG0289 72 VLI 74 (266)
T ss_pred EEE
Confidence 988
No 411
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.78 E-value=0.48 Score=44.02 Aligned_cols=65 Identities=18% Similarity=0.207 Sum_probs=41.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccccc-CCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal-~dAD 174 (405)
.++|+|+| .|.||+.++..|...|. ++.+ +|.+.++++..+.++. .... +..+.+ .+||
T Consensus 28 gk~v~I~G-~G~vG~~~A~~L~~~G~-----~Vvv----~D~~~~~~~~~~~~~g---------~~~v-~~~~l~~~~~D 87 (200)
T cd01075 28 GKTVAVQG-LGKVGYKLAEHLLEEGA-----KLIV----ADINEEAVARAAELFG---------ATVV-APEEIYSVDAD 87 (200)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHcC---------CEEE-cchhhccccCC
Confidence 47999999 59999999999998775 2443 4666565554443221 1111 122333 3799
Q ss_pred EEEEeC
Q 015501 175 WALLIG 180 (405)
Q Consensus 175 iVIi~~ 180 (405)
+++.++
T Consensus 88 v~vp~A 93 (200)
T cd01075 88 VFAPCA 93 (200)
T ss_pred EEEecc
Confidence 988654
No 412
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.77 E-value=0.96 Score=42.14 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=40.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe--cCcccccCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFED 172 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~eal~d 172 (405)
+.+||.|||| |.||...+..|+..+. .|.+ +++.. .+ ...++.+. ..+... .-.++.+.+
T Consensus 9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga-----~V~V----Is~~~--~~-~l~~l~~~-----~~i~~~~~~~~~~~l~~ 70 (202)
T PRK06718 9 SNKRVVIVGG-GKVAGRRAITLLKYGA-----HIVV----ISPEL--TE-NLVKLVEE-----GKIRWKQKEFEPSDIVD 70 (202)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-----eEEE----EcCCC--CH-HHHHHHhC-----CCEEEEecCCChhhcCC
Confidence 3579999995 9999999999998773 2544 23221 11 11122211 112221 234568999
Q ss_pred CcEEEEeCC
Q 015501 173 AEWALLIGA 181 (405)
Q Consensus 173 ADiVIi~~g 181 (405)
+|+||.+-+
T Consensus 71 adlViaaT~ 79 (202)
T PRK06718 71 AFLVIAATN 79 (202)
T ss_pred ceEEEEcCC
Confidence 999887633
No 413
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=91.76 E-value=0.52 Score=48.96 Aligned_cols=92 Identities=12% Similarity=0.106 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.-.+|+|+|+ |.+|..++..+...|. .|.+ +|+++.++...+++ ++ . + .+..++++++|
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga-----~ViV----~d~dp~ra~~A~~~------G~--~--v-~~l~eal~~aD 269 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGA-----RVIV----TEVDPICALQAAMD------GF--R--V-MTMEEAAELGD 269 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE----EcCCchhhHHHHhc------CC--E--e-cCHHHHHhCCC
Confidence 4579999995 9999999999988765 2444 34444443322221 11 1 1 13457788999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+||.+.|. ..++.. ..+... ++++++++++-+.
T Consensus 270 VVI~aTG~---------------~~vI~~--~~~~~m-K~GailiNvG~~d 302 (425)
T PRK05476 270 IFVTATGN---------------KDVITA--EHMEAM-KDGAILANIGHFD 302 (425)
T ss_pred EEEECCCC---------------HHHHHH--HHHhcC-CCCCEEEEcCCCC
Confidence 99876442 223331 122332 4678999998543
No 414
>PRK08278 short chain dehydrogenase; Provisional
Probab=91.75 E-value=2.6 Score=40.40 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.+++.|+||+|.+|.+++..|+..|.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~ 31 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA 31 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC
Confidence 346899999999999999999998774
No 415
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=91.71 E-value=0.57 Score=48.39 Aligned_cols=91 Identities=11% Similarity=0.132 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.-.+|+|+|+ |.+|..++..+...|. .+.. +|.++.++....+ + .+ .+ ....++++++|
T Consensus 194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga-----~ViV----~d~dp~r~~~A~~---~---G~----~v-~~leeal~~aD 252 (406)
T TIGR00936 194 AGKTVVVAGY-GWCGKGIAMRARGMGA-----RVIV----TEVDPIRALEAAM---D---GF----RV-MTMEEAAKIGD 252 (406)
T ss_pred CcCEEEEECC-CHHHHHHHHHHhhCcC-----EEEE----EeCChhhHHHHHh---c---CC----Ee-CCHHHHHhcCC
Confidence 4579999995 9999999998887664 2433 3333333321111 1 11 11 12356889999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+||.+.|. ..++..- .+... ++++++++++-.
T Consensus 253 VVItaTG~---------------~~vI~~~--~~~~m-K~GailiN~G~~ 284 (406)
T TIGR00936 253 IFITATGN---------------KDVIRGE--HFENM-KDGAIVANIGHF 284 (406)
T ss_pred EEEECCCC---------------HHHHHHH--HHhcC-CCCcEEEEECCC
Confidence 99876442 2333321 22222 477899999864
No 416
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=91.66 E-value=2.6 Score=38.98 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+.|+||+|.+|.+++..|+..|.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~ 25 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGY 25 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC
Confidence 578999999999999999998765
No 417
>PRK12742 oxidoreductase; Provisional
Probab=91.63 E-value=0.88 Score=42.15 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.||..++..|++.|.
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~ 31 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA 31 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998764
No 418
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=91.63 E-value=0.75 Score=50.66 Aligned_cols=46 Identities=33% Similarity=0.364 Sum_probs=33.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.||.+++..|++.|. .|.+ .+++.+.++....++.
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~Ga-----~Vvi----~~r~~~~~~~~~~~l~ 459 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAEGA-----HVVL----ADLNLEAAEAVAAEIN 459 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 36899999999999999999998775 2444 3555555555544443
No 419
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=91.56 E-value=2.8 Score=39.55 Aligned_cols=26 Identities=4% Similarity=0.179 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~ 32 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKA 32 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 46999999999999999999998775
No 420
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=91.54 E-value=1.4 Score=42.64 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
|+||+|||+ |.||..++..|...+
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~ 24 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDP 24 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCC
Confidence 579999996 999999999887754
No 421
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=91.50 E-value=0.52 Score=43.74 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||+|+|+ |.+|+.++..|+..|+
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~GV 45 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSGI 45 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcCC
Confidence 469999995 8899999999999987
No 422
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=91.49 E-value=2.9 Score=38.95 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.+.|+||+|.+|.+++..|+..|.
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~ 28 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF 28 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC
Confidence 5789999999999999999998874
No 423
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.49 E-value=0.7 Score=45.62 Aligned_cols=68 Identities=18% Similarity=0.019 Sum_probs=43.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+..||.|+|+ |.+|..++..|...|. .+.+ +|++.++.+ .+.++ +. +.....+..+.++++|
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga-----~V~v----~~r~~~~~~-~~~~~-----G~--~~~~~~~l~~~l~~aD 212 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKALGA-----NVTV----GARKSAHLA-RITEM-----GL--SPFHLSELAEEVGKID 212 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC-----EEEE----EECCHHHHH-HHHHc-----CC--eeecHHHHHHHhCCCC
Confidence 3589999995 9999999999988663 2444 455544322 22221 11 1111123457789999
Q ss_pred EEEEeC
Q 015501 175 WALLIG 180 (405)
Q Consensus 175 iVIi~~ 180 (405)
+||.+.
T Consensus 213 iVI~t~ 218 (296)
T PRK08306 213 IIFNTI 218 (296)
T ss_pred EEEECC
Confidence 999873
No 424
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=91.47 E-value=0.34 Score=49.67 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=38.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|+||+.++..|...|+ .+.. +|+.....+ .. .. ..+..+.+++||+
T Consensus 116 gktvGIIG-~G~IG~~va~~l~a~G~-----~V~~----~Dp~~~~~~-------~~-------~~-~~~l~ell~~aDi 170 (381)
T PRK00257 116 ERTYGVVG-AGHVGGRLVRVLRGLGW-----KVLV----CDPPRQEAE-------GD-------GD-FVSLERILEECDV 170 (381)
T ss_pred cCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----ECCcccccc-------cC-------cc-ccCHHHHHhhCCE
Confidence 47999999 59999999999987664 2332 343211110 00 01 1245677899999
Q ss_pred EEEe
Q 015501 176 ALLI 179 (405)
Q Consensus 176 VIi~ 179 (405)
|++.
T Consensus 171 V~lh 174 (381)
T PRK00257 171 ISLH 174 (381)
T ss_pred EEEe
Confidence 9886
No 425
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=91.43 E-value=0.57 Score=47.09 Aligned_cols=74 Identities=24% Similarity=0.178 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
....++|||+ |..+..-+..+..- ++- ++|.+ .+++.+..+..+.++.+.. + .++....+..+++++||
T Consensus 129 da~~laiIGa-G~qA~~ql~a~~~v--~~~-~~I~i----~~r~~~~~e~~a~~l~~~~-~--~~v~a~~s~~~av~~aD 197 (330)
T COG2423 129 DASTLAIIGA-GAQARTQLEALKAV--RDI-REIRV----YSRDPEAAEAFAARLRKRG-G--EAVGAADSAEEAVEGAD 197 (330)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhh--CCc-cEEEE----EcCCHHHHHHHHHHHHhhc-C--ccceeccCHHHHhhcCC
Confidence 4688999995 99988877766653 221 24554 5778888888888877543 1 14555567789999999
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+|+.+
T Consensus 198 iIvt~ 202 (330)
T COG2423 198 IVVTA 202 (330)
T ss_pred EEEEe
Confidence 99875
No 426
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=91.39 E-value=3.4 Score=38.24 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+++.|+||+|.+|.+++..|+..|.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~ 27 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY 27 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC
Confidence 4889999999999999999998764
No 427
>PLN02928 oxidoreductase family protein
Probab=91.38 E-value=0.36 Score=48.79 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=54.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc-CCCcceEEEecCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~-~~~~~~v~i~~~~~eal~dAD 174 (405)
-++|+||| .|.||..+|..|...|+ .|.. +|+...........+.... ..+........+..+.++.||
T Consensus 159 gktvGIiG-~G~IG~~vA~~l~afG~-----~V~~----~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aD 228 (347)
T PLN02928 159 GKTVFILG-YGAIGIELAKRLRPFGV-----KLLA----TRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEAD 228 (347)
T ss_pred CCEEEEEC-CCHHHHHHHHHHhhCCC-----EEEE----ECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCC
Confidence 37999999 59999999999987664 2432 3443211110000000000 000000001235678999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+|++.. |..+. |..++. .+.+... +|++++||++=
T Consensus 229 iVvl~l--Plt~~---------T~~li~--~~~l~~M-k~ga~lINvaR 263 (347)
T PLN02928 229 IVVLCC--TLTKE---------TAGIVN--DEFLSSM-KKGALLVNIAR 263 (347)
T ss_pred EEEECC--CCChH---------hhcccC--HHHHhcC-CCCeEEEECCC
Confidence 999873 32221 111221 2334443 58899999984
No 428
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=91.37 E-value=0.34 Score=48.65 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.|+||+|+||+|..|..+...|...+-
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ 27 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPD 27 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Confidence 378999999999999999999988764
No 429
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=91.35 E-value=0.35 Score=48.71 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|+||+|.|+ |.||..+...|.+++.
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~ 25 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGR 25 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCC
Confidence 579999996 9999999999887653
No 430
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=91.27 E-value=0.4 Score=48.09 Aligned_cols=93 Identities=20% Similarity=0.151 Sum_probs=52.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|+||+.++..+...|+ .+.. +|+...+-. + -.+.. .-..+..+-++.|||
T Consensus 142 gkTvGIiG-~G~IG~~va~~l~afgm-----~v~~----~d~~~~~~~--~--~~~~~-------~~~~~Ld~lL~~sDi 200 (324)
T COG0111 142 GKTVGIIG-LGRIGRAVAKRLKAFGM-----KVIG----YDPYSPRER--A--GVDGV-------VGVDSLDELLAEADI 200 (324)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC-----eEEE----ECCCCchhh--h--ccccc-------eecccHHHHHhhCCE
Confidence 36999999 59999999999988765 2332 444211111 1 01111 111346788999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++. .|..+. +|- + -|.+ .+.+. ++++++||++=
T Consensus 201 v~lh--~PlT~e-T~g-~--i~~~-------~~a~M-K~gailIN~aR 234 (324)
T COG0111 201 LTLH--LPLTPE-TRG-L--INAE-------ELAKM-KPGAILINAAR 234 (324)
T ss_pred EEEc--CCCCcc-hhc-c--cCHH-------HHhhC-CCCeEEEECCC
Confidence 9885 333221 111 1 1212 22332 47889999883
No 431
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.13 E-value=2.3 Score=42.86 Aligned_cols=128 Identities=24% Similarity=0.157 Sum_probs=71.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec---Cccccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---NPYELF 170 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~---~~~eal 170 (405)
++-.+|+|+|+ |.+|...++.....+ + ++.. +|+++++++ .+.+|- .+..+.. +..+++
T Consensus 165 ~pG~~V~I~G~-GGlGh~avQ~Aka~g-a----~Via----~~~~~~K~e-~a~~lG-------Ad~~i~~~~~~~~~~~ 226 (339)
T COG1064 165 KPGKWVAVVGA-GGLGHMAVQYAKAMG-A----EVIA----ITRSEEKLE-LAKKLG-------ADHVINSSDSDALEAV 226 (339)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHcC-C----eEEE----EeCChHHHH-HHHHhC-------CcEEEEcCCchhhHHh
Confidence 34689999995 888877666655555 2 2433 577777765 555542 1222221 223333
Q ss_pred CC-CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch-hHHH-H-HHHHHCCCCCCCceee
Q 015501 171 ED-AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC-NTNA-L-ICLKNAPSIPAKNFHA 246 (405)
Q Consensus 171 ~d-ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~-d~~t-~-~~~k~s~~~~~k~ig~ 246 (405)
++ +|+||.+.+ + .-+....+.++ ++|.++.+++|- ..+. . +..-... ..++.|.
T Consensus 227 ~~~~d~ii~tv~-~---------------~~~~~~l~~l~----~~G~~v~vG~~~~~~~~~~~~~~li~~--~~~i~GS 284 (339)
T COG1064 227 KEIADAIIDTVG-P---------------ATLEPSLKALR----RGGTLVLVGLPGGGPIPLLPAFLLILK--EISIVGS 284 (339)
T ss_pred HhhCcEEEECCC-h---------------hhHHHHHHHHh----cCCEEEEECCCCCcccCCCCHHHhhhc--CeEEEEE
Confidence 33 999998865 2 12223333333 789999999994 3322 1 1111111 1256664
Q ss_pred --cchhhHHHHHHHHHH
Q 015501 247 --LTRLDENRAKCQLAL 261 (405)
Q Consensus 247 --gt~LDs~R~~~~lA~ 261 (405)
||.-|..-+..+.++
T Consensus 285 ~~g~~~d~~e~l~f~~~ 301 (339)
T COG1064 285 LVGTRADLEEALDFAAE 301 (339)
T ss_pred ecCCHHHHHHHHHHHHh
Confidence 677777666666544
No 432
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=91.13 E-value=0.41 Score=44.76 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=40.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-Eec----CcccccCCC
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGI----NPYELFEDA 173 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~~----~~~eal~dA 173 (405)
|+|+||+|.+|++++..|+..+. +|.... .+.+.+. +..|.+.. . .+. ..- ...++|+|+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-----~V~~l~--R~~~~~~----~~~l~~~g--~--~vv~~d~~~~~~l~~al~g~ 65 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-----SVRALV--RDPSSDR----AQQLQALG--A--EVVEADYDDPESLVAALKGV 65 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-----CEEEEE--SSSHHHH----HHHHHHTT--T--EEEES-TT-HHHHHHHHTTC
T ss_pred CEEECCccHHHHHHHHHHHhCCC-----CcEEEE--eccchhh----hhhhhccc--c--eEeecccCCHHHHHHHHcCC
Confidence 78999999999999999999543 354322 2222122 22232221 1 111 111 234689999
Q ss_pred cEEEEeCC
Q 015501 174 EWALLIGA 181 (405)
Q Consensus 174 DiVIi~~g 181 (405)
|.|+++-+
T Consensus 66 d~v~~~~~ 73 (233)
T PF05368_consen 66 DAVFSVTP 73 (233)
T ss_dssp SEEEEESS
T ss_pred ceEEeecC
Confidence 99998744
No 433
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.12 E-value=0.51 Score=46.35 Aligned_cols=73 Identities=12% Similarity=0.121 Sum_probs=46.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--CcccccCCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFEDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~eal~dA 173 (405)
..++.|+|| |..|.++++.|+..+.- .|.+ .+++.++++..+.++.... +.. .+.... +..+.+.++
T Consensus 127 ~k~vlilGa-GGaarAi~~aL~~~g~~----~i~i----~nR~~~ka~~La~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 195 (283)
T PRK14027 127 LDSVVQVGA-GGVGNAVAYALVTHGVQ----KLQV----ADLDTSRAQALADVINNAV-GRE-AVVGVDARGIEDVIAAA 195 (283)
T ss_pred CCeEEEECC-cHHHHHHHHHHHHCCCC----EEEE----EcCCHHHHHHHHHHHhhcc-Ccc-eEEecCHhHHHHHHhhc
Confidence 468999995 99999999999987752 3555 5777788877776653211 110 111111 112345689
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+||-+
T Consensus 196 divINa 201 (283)
T PRK14027 196 DGVVNA 201 (283)
T ss_pred CEEEEc
Confidence 999875
No 434
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=91.09 E-value=2.2 Score=37.04 Aligned_cols=115 Identities=15% Similarity=0.076 Sum_probs=65.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch--hhhHHHHHHHhhhhcCCCcceEEEec---Cc------
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSLFPLLREVKIGI---NP------ 166 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~--~~~l~g~a~DL~d~~~~~~~~v~i~~---~~------ 166 (405)
.+.|+||+|.+|..++..|++.+-. .+.+ ..++ .+.+.....++.... .++.+.. .+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~----~v~~----~~r~~~~~~~~~l~~~l~~~~----~~~~~~~~D~~~~~~~~~ 69 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGAR----VVIL----TSRSEDSEGAQELIQELKAPG----AKITFIECDLSDPESIRA 69 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTE----EEEE----EESSCHHHHHHHHHHHHHHTT----SEEEEEESETTSHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCce----EEEE----eeecccccccccccccccccc----cccccccccccccccccc
Confidence 6889999999999999999998431 2443 2333 445554555454211 2222221 11
Q ss_pred -----ccccCCCcEEEEeCCcCCC-CCCc--h---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 167 -----YELFEDAEWALLIGAKPRG-PGME--R---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 167 -----~eal~dADiVIi~~g~~~k-~g~~--r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
.+.....|++|..+|.... +..+ . ...+..|..-...+.+.+.. . ..+.|++++-...
T Consensus 70 ~~~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~-~~g~iv~~sS~~~ 138 (167)
T PF00106_consen 70 LIEEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-Q-GGGKIVNISSIAG 138 (167)
T ss_dssp HHHHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-H-TTEEEEEEEEGGG
T ss_pred cccccccccccccccccccccccccccccccchhhhhccccccceeeeeeehhee-c-cccceEEecchhh
Confidence 1234578999988776541 1111 1 13345554444445555555 3 5788888886553
No 435
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=91.03 E-value=1.2 Score=44.02 Aligned_cols=76 Identities=21% Similarity=0.179 Sum_probs=43.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEE-eccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALK-LLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~-l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
+-+|++-+|-..+|+.++...-+.-|+ | +.+. --+++.+++- ...+..+.. .....++++.|.+++++||
T Consensus 152 ~g~k~a~vGDgNNv~nSl~~~~a~~G~---d--v~ia~Pk~~~p~~~~-~~~a~~~a~---~~g~~i~~t~d~~eAv~gA 222 (310)
T COG0078 152 KGLKLAYVGDGNNVANSLLLAAAKLGM---D--VRIATPKGYEPDPEV-VEKAKENAK---ESGGKITLTEDPEEAVKGA 222 (310)
T ss_pred cCcEEEEEcCcchHHHHHHHHHHHhCC---e--EEEECCCcCCcCHHH-HHHHHHHHH---hcCCeEEEecCHHHHhCCC
Confidence 458999999855666665555444443 1 2210 0011222222 223333221 1234789999999999999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|..-
T Consensus 223 DvvyTD 228 (310)
T COG0078 223 DVVYTD 228 (310)
T ss_pred CEEEec
Confidence 998864
No 436
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=90.97 E-value=0.6 Score=45.83 Aligned_cols=95 Identities=19% Similarity=0.276 Sum_probs=58.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--CCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dAD 174 (405)
|||.|+|+.|++|..|...|. .+. +-+.+ ++.. +|+.+.. ...+.++ .-|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~----~v~a~-----~~~~-------~Ditd~~-----------~v~~~i~~~~PD 52 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF----EVIAT-----DRAE-------LDITDPD-----------AVLEVIRETRPD 52 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc----eEEec-----cCcc-------ccccChH-----------HHHHHHHhhCCC
Confidence 569999999999999988876 221 01222 2110 3333221 0122223 458
Q ss_pred EEEEeCCcCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 175 WALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 175 iVIi~~g~~~--k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+||.++.+.. +...++..-+..|+.-...+++..+++ ++++|-+|
T Consensus 53 vVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~---ga~lVhiS 99 (281)
T COG1091 53 VVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEV---GARLVHIS 99 (281)
T ss_pred EEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHh---CCeEEEee
Confidence 8888876543 333456666788999999999988886 35666555
No 437
>PLN02494 adenosylhomocysteinase
Probab=90.94 E-value=0.63 Score=48.87 Aligned_cols=94 Identities=13% Similarity=0.121 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.-.+|+|+|+ |.||..++..+...|. .|.+ +|++..++. .+.+ + .+ .+ ....++++.+|
T Consensus 253 aGKtVvViGy-G~IGr~vA~~aka~Ga-----~VIV----~e~dp~r~~-eA~~--~---G~--~v---v~leEal~~AD 311 (477)
T PLN02494 253 AGKVAVICGY-GDVGKGCAAAMKAAGA-----RVIV----TEIDPICAL-QALM--E---GY--QV---LTLEDVVSEAD 311 (477)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE----EeCCchhhH-HHHh--c---CC--ee---ccHHHHHhhCC
Confidence 3579999995 9999999999887664 2443 344433322 1211 1 11 11 12456788999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (405)
+||.+.|.. .++. .+.+... ++++++++++-+.+.
T Consensus 312 VVI~tTGt~---------------~vI~--~e~L~~M-K~GAiLiNvGr~~~e 346 (477)
T PLN02494 312 IFVTTTGNK---------------DIIM--VDHMRKM-KNNAIVCNIGHFDNE 346 (477)
T ss_pred EEEECCCCc---------------cchH--HHHHhcC-CCCCEEEEcCCCCCc
Confidence 999865421 1111 1233333 478999999986433
No 438
>PRK06953 short chain dehydrogenase; Provisional
Probab=90.85 E-value=2 Score=39.59 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|.++.|+||+|.+|++++..|+..|.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~ 26 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGW 26 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCC
Confidence 46899999999999999999998764
No 439
>PLN02858 fructose-bisphosphate aldolase
Probab=90.84 E-value=0.76 Score=54.54 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=46.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
+.++||++|| .|.||..++..|+..|. ++.. .|++.++++..+ +.. .....+..+.+++|
T Consensus 322 ~~~~~IGfIG-lG~MG~~mA~~L~~~G~-----~V~v----~dr~~~~~~~l~----~~G------a~~~~s~~e~~~~a 381 (1378)
T PLN02858 322 KPVKRIGFIG-LGAMGFGMASHLLKSNF-----SVCG----YDVYKPTLVRFE----NAG------GLAGNSPAEVAKDV 381 (1378)
T ss_pred cCCCeEEEEC-chHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHH----HcC------CeecCCHHHHHhcC
Confidence 3468999999 69999999999998775 2433 466655554332 111 11234566788999
Q ss_pred cEEEEeCC
Q 015501 174 EWALLIGA 181 (405)
Q Consensus 174 DiVIi~~g 181 (405)
|+||++..
T Consensus 382 DvVi~~V~ 389 (1378)
T PLN02858 382 DVLVIMVA 389 (1378)
T ss_pred CEEEEecC
Confidence 99998743
No 440
>PRK06114 short chain dehydrogenase; Provisional
Probab=90.65 E-value=3.1 Score=39.15 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.||.+++..|++.|.
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~ 33 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGA 33 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999999775
No 441
>PRK07877 hypothetical protein; Provisional
Probab=90.51 E-value=0.61 Score=51.62 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGP 124 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~ 124 (405)
..||+|+|+ | +|++++..|+..|++|+
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~ 133 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGE 133 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCe
Confidence 479999996 8 99999999999887664
No 442
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=90.40 E-value=0.51 Score=48.29 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.-++|+||| .|+||+.++..|..-|+
T Consensus 115 ~gktvGIIG-~G~IG~~vA~~l~a~G~ 140 (378)
T PRK15438 115 HDRTVGIVG-VGNVGRRLQARLEALGI 140 (378)
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHCCC
Confidence 357999999 59999999999987664
No 443
>PRK12367 short chain dehydrogenase; Provisional
Probab=90.39 E-value=1.6 Score=41.55 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~G~ 39 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAKGA 39 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC
Confidence 35899999999999999999998775
No 444
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=90.36 E-value=0.38 Score=40.00 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=42.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--CC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dA 173 (405)
+||+|||+ |.+|......+... +-+ ++. .+ .|++.++++..+... . +..+++..+.+. +.
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~----~v~-~v--~d~~~~~~~~~~~~~-----~----~~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDF----EVV-AV--CDPDPERAEAFAEKY-----G----IPVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTE----EEE-EE--ECSSHHHHHHHHHHT-----T----SEEESSHHHHHHHTTE
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCc----EEE-EE--EeCCHHHHHHHHHHh-----c----ccchhHHHHHHHhhcC
Confidence 58999995 99999998888775 221 222 22 466666665443321 1 125566666666 79
Q ss_pred cEEEEeC
Q 015501 174 EWALLIG 180 (405)
Q Consensus 174 DiVIi~~ 180 (405)
|+|+++.
T Consensus 64 D~V~I~t 70 (120)
T PF01408_consen 64 DAVIIAT 70 (120)
T ss_dssp SEEEEES
T ss_pred CEEEEec
Confidence 9999874
No 445
>PRK08177 short chain dehydrogenase; Provisional
Probab=90.32 E-value=0.52 Score=43.64 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|+++.|+||+|.+|++++..|+..|.
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~ 26 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGW 26 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCC
Confidence 46799999999999999999998764
No 446
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=90.31 E-value=0.71 Score=48.53 Aligned_cols=91 Identities=14% Similarity=0.133 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.-++|+|+|. |.||..+|..+...|. .|.+ ++++..+.....+ + .+ .. .+..++++.||
T Consensus 253 aGKtVgVIG~-G~IGr~vA~rL~a~Ga-----~ViV----~e~dp~~a~~A~~---~---G~----~~-~~leell~~AD 311 (476)
T PTZ00075 253 AGKTVVVCGY-GDVGKGCAQALRGFGA-----RVVV----TEIDPICALQAAM---E---GY----QV-VTLEDVVETAD 311 (476)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE----EeCCchhHHHHHh---c---Cc----ee-ccHHHHHhcCC
Confidence 3579999995 9999999999987664 2433 3333333211111 1 11 11 23467889999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+|+.+.+.+ .++. .+.+... +|++++++++-.
T Consensus 312 IVI~atGt~---------------~iI~--~e~~~~M-KpGAiLINvGr~ 343 (476)
T PTZ00075 312 IFVTATGNK---------------DIIT--LEHMRRM-KNNAIVGNIGHF 343 (476)
T ss_pred EEEECCCcc---------------cccC--HHHHhcc-CCCcEEEEcCCC
Confidence 999874421 1221 1233333 488999999965
No 447
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.11 E-value=0.78 Score=47.41 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=41.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-----Cccc-cc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-----NPYE-LF 170 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-----~~~e-al 170 (405)
|||.|+|+ |.+|.+++..|...+. ++.+ +|++.++++....++ . ..+..+. ...+ .+
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~-----~v~v----id~~~~~~~~~~~~~-----~--~~~~~gd~~~~~~l~~~~~ 63 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN-----DVTV----IDTDEERLRRLQDRL-----D--VRTVVGNGSSPDVLREAGA 63 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----cEEE----EECCHHHHHHHHhhc-----C--EEEEEeCCCCHHHHHHcCC
Confidence 58999995 9999999999988664 3544 566656555332111 0 0111111 1122 37
Q ss_pred CCCcEEEEeC
Q 015501 171 EDAEWALLIG 180 (405)
Q Consensus 171 ~dADiVIi~~ 180 (405)
.++|.||++.
T Consensus 64 ~~a~~vi~~~ 73 (453)
T PRK09496 64 EDADLLIAVT 73 (453)
T ss_pred CcCCEEEEec
Confidence 8999998864
No 448
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=90.06 E-value=4.6 Score=39.74 Aligned_cols=115 Identities=15% Similarity=0.077 Sum_probs=61.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cc------
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY------ 167 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~------ 167 (405)
+.+.|+||++.||.+++..|+..|.. .+.+ ..++.++++..+.++.... .++.. ..| +.
T Consensus 4 k~vlITGas~GIG~aia~~L~~~G~~----~V~l----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~v~~~ 71 (314)
T TIGR01289 4 PTVIITGASSGLGLYAAKALAATGEW----HVIM----ACRDFLKAEQAAKSLGMPK----DSYTIMHLDLGSLDSVRQF 71 (314)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHhcCCC----CeEEEEEcCCCCHHHHHHH
Confidence 47899999999999999999987721 2444 3455555554444443110 11111 111 11
Q ss_pred -----cccCCCcEEEEeCCcCCC--C--CCchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 -----ELFEDAEWALLIGAKPRG--P--GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 -----eal~dADiVIi~~g~~~k--~--g~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.+...|++|..+|.... + ..+.. ..+..|. -+.+.+.+.+.+..+..+.||+++-
T Consensus 72 ~~~~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS 143 (314)
T TIGR01289 72 VQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGS 143 (314)
T ss_pred HHHHHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEec
Confidence 123468999988775321 1 11211 2244443 3455556666653111367777653
No 449
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=90.05 E-value=0.23 Score=47.90 Aligned_cols=77 Identities=23% Similarity=0.247 Sum_probs=44.6
Q ss_pred CEEE-EEcCCCchHHHHHHHHHhcccCCCCCceEEEecc-ccchhhhHHHHHHHh--hhhcCCC-cceEEEecCcccccC
Q 015501 97 VNIA-VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG-SERSLQALEGVAMEL--EDSLFPL-LREVKIGINPYELFE 171 (405)
Q Consensus 97 ~KI~-IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~-~d~~~~~l~g~a~DL--~d~~~~~-~~~v~i~~~~~eal~ 171 (405)
.|++ |+||+|.||+-....|...+.|+ |. .++ ..++..+--+.+-.- .+.. |- ..++++...+.+.|.
T Consensus 4 kk~a~vlGaTGaVGQrFi~lLsdhP~f~----ik--vLgAS~RSAGK~ya~a~~wkqt~~l-p~~~~e~~V~ec~~~~F~ 76 (361)
T KOG4777|consen 4 KKSAPVLGATGAVGQRFISLLSDHPYFS----IK--VLGASKRSAGKRYAFAGNWKQTDLL-PESAHEYTVEECTADSFN 76 (361)
T ss_pred ccccceeeccchhHHHHHHHhccCCcce----ee--eecccccccCCceEecccchhcccc-cchhhhhhHhhcChhhcc
Confidence 4666 99999999999999888887653 32 221 222222111111100 0111 11 124555556788999
Q ss_pred CCcEEEEeC
Q 015501 172 DAEWALLIG 180 (405)
Q Consensus 172 dADiVIi~~ 180 (405)
+||||+...
T Consensus 77 ecDIvfsgl 85 (361)
T KOG4777|consen 77 ECDIVFSGL 85 (361)
T ss_pred cccEEEecC
Confidence 999998753
No 450
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=89.88 E-value=1.1 Score=46.05 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|||+ |.+|+.++..|+..|+
T Consensus 42 ~~~VlviG~-GGlGs~va~~La~~Gv 66 (392)
T PRK07878 42 NARVLVIGA-GGLGSPTLLYLAAAGV 66 (392)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHcCC
Confidence 359999995 9999999999999886
No 451
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=89.86 E-value=0.79 Score=45.98 Aligned_cols=92 Identities=18% Similarity=0.219 Sum_probs=52.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++++||| .|.||..+|..+..-|+ +|. . .|+... .+ ...++ . ... .+..+.++.||+
T Consensus 146 gktvGIiG-~GrIG~avA~r~~~Fgm-----~v~--y--~~~~~~-~~-~~~~~-~--------~~y-~~l~ell~~sDi 203 (324)
T COG1052 146 GKTLGIIG-LGRIGQAVARRLKGFGM-----KVL--Y--YDRSPN-PE-AEKEL-G--------ARY-VDLDELLAESDI 203 (324)
T ss_pred CCEEEEEC-CCHHHHHHHHHHhcCCC-----EEE--E--ECCCCC-hH-HHhhc-C--------cee-ccHHHHHHhCCE
Confidence 58999999 79999999998884333 233 2 344322 11 11111 0 111 237899999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++... ..+. +|. ..|.+. +++. ++++++||++=
T Consensus 204 i~l~~P--lt~~-T~h---Lin~~~-------l~~m-k~ga~lVNtaR 237 (324)
T COG1052 204 ISLHCP--LTPE-TRH---LINAEE-------LAKM-KPGAILVNTAR 237 (324)
T ss_pred EEEeCC--CChH-Hhh---hcCHHH-------HHhC-CCCeEEEECCC
Confidence 998732 2111 111 223222 3333 58899999883
No 452
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=89.82 E-value=1.5 Score=43.37 Aligned_cols=108 Identities=18% Similarity=0.119 Sum_probs=58.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc-ceEEEecCcccccC--CC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFE--DA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~~~eal~--dA 173 (405)
|+|.|+|++|.||||.+..|++.|. +.++++-+ ..-..+.+.... . .+. .++.-+.-..+.|+ .-
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~----~vvV~DNL-~~g~~~~v~~~~------~-~f~~gDi~D~~~L~~vf~~~~i 68 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH----EVVVLDNL-SNGHKIALLKLQ------F-KFYEGDLLDRALLTAVFEENKI 68 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC----eEEEEecC-CCCCHHHhhhcc------C-ceEEeccccHHHHHHHHHhcCC
Confidence 6899999999999999999999776 23343211 222222222111 0 100 11111101112222 56
Q ss_pred cEEEEeCCcCCCCCC---chhhhHHhhHHHHHHHHHHHHhhcCCCeEE
Q 015501 174 EWALLIGAKPRGPGM---ERAGLLDINGQIFAEQGKALNAVASRNVKV 218 (405)
Q Consensus 174 DiVIi~~g~~~k~g~---~r~~ll~~N~~i~~~i~~~i~~~a~p~a~v 218 (405)
|.||-.++... -|+ .-+.+.+.|.-=-..+.+.|.++. .+-+|
T Consensus 69 daViHFAa~~~-VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~g-v~~~v 114 (329)
T COG1087 69 DAVVHFAASIS-VGESVQNPLKYYDNNVVGTLNLIEAMLQTG-VKKFI 114 (329)
T ss_pred CEEEECccccc-cchhhhCHHHHHhhchHhHHHHHHHHHHhC-CCEEE
Confidence 78887665322 122 234567778777788888888874 44444
No 453
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.72 E-value=0.89 Score=43.35 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar~GV 35 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALARSGV 35 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999986
No 454
>PLN02858 fructose-bisphosphate aldolase
Probab=89.71 E-value=1.1 Score=53.34 Aligned_cols=65 Identities=15% Similarity=0.010 Sum_probs=45.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
..||++|| .|.+|..++..|+..|. ++.. .|++.++.+..+. .. ........++.++||+
T Consensus 4 ~~~IGfIG-LG~MG~~mA~~L~~~G~-----~v~v----~dr~~~~~~~l~~----~G------a~~~~s~~e~a~~adv 63 (1378)
T PLN02858 4 AGVVGFVG-LDSLSFELASSLLRSGF-----KVQA----FEISTPLMEKFCE----LG------GHRCDSPAEAAKDAAA 63 (1378)
T ss_pred CCeEEEEc-hhHHHHHHHHHHHHCCC-----eEEE----EcCCHHHHHHHHH----cC------CeecCCHHHHHhcCCE
Confidence 46899999 69999999999998775 2443 4666666554432 11 1233456788889999
Q ss_pred EEEeC
Q 015501 176 ALLIG 180 (405)
Q Consensus 176 VIi~~ 180 (405)
||++-
T Consensus 64 Vi~~l 68 (1378)
T PLN02858 64 LVVVL 68 (1378)
T ss_pred EEEEc
Confidence 99863
No 455
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.70 E-value=1.2 Score=46.19 Aligned_cols=111 Identities=17% Similarity=0.167 Sum_probs=57.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchh-hhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~-~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.++|.|+|+ |.+|..+|..|+..|. .+.+ +|.+. +.+.....+|.. ...++.......+...++|
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G~-----~V~~----~d~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~d 70 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLGA-----KVIL----TDEKEEDQLKEALEELGE----LGIELVLGEYPEEFLEGVD 70 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE----EeCCchHHHHHHHHHHHh----cCCEEEeCCcchhHhhcCC
Confidence 469999996 8899999999999885 3544 33332 223222233321 1112222111224457899
Q ss_pred EEEEeCCcCCCCCCc-hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 175 WALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 175 iVIi~~g~~~k~g~~-r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+||.+.|.+ +.-. ....-.++++++...+...... + ..+|-+|--+
T Consensus 71 ~vv~~~g~~--~~~~~~~~a~~~~i~~~~~~~~~~~~~--~-~~vI~ITGS~ 117 (450)
T PRK14106 71 LVVVSPGVP--LDSPPVVQAHKKGIEVIGEVELAYRFS--K-APIVAITGTN 117 (450)
T ss_pred EEEECCCCC--CCCHHHHHHHHCCCcEEeHHHHHHhhc--C-CCEEEEeCCC
Confidence 999977653 2111 1111234555655555433332 2 3455555433
No 456
>PRK07856 short chain dehydrogenase; Provisional
Probab=89.70 E-value=0.68 Score=43.58 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.+++.|+||+|.||.+++..|+..+.
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~ 31 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGA 31 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 347899999999999999999998764
No 457
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=89.69 E-value=1.6 Score=43.49 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.||+|+||+|.+|.-++..|...+-
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~ 26 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD 26 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC
Confidence 4899999999999999999988654
No 458
>PLN02996 fatty acyl-CoA reductase
Probab=89.69 E-value=4.8 Score=42.63 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhc
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAG 119 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~ 119 (405)
+-+.++|.|+||+|++|++++..|+..
T Consensus 8 ~~~~k~VlvTGaTGFlG~~ll~~LL~~ 34 (491)
T PLN02996 8 FLENKTILVTGATGFLAKIFVEKILRV 34 (491)
T ss_pred HhCCCeEEEeCCCcHHHHHHHHHHHhh
Confidence 445679999999999999999998864
No 459
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.66 E-value=3.8 Score=40.51 Aligned_cols=117 Identities=9% Similarity=0.010 Sum_probs=70.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec---------Cc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~---------~~ 166 (405)
...|.|+||.+.+|..+|++++..+. .+.|. |+|.+..+..+..+.+..-.+.....++. .-
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~-----~~vl~----Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGA-----KLVLW----DINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCC-----eEEEE----eccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHH
Confidence 46899999999999999999999875 36664 34434434344434332000001111211 13
Q ss_pred ccccCCCcEEEEeCCc-CCCCCCc--hh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 YELFEDAEWALLIGAK-PRGPGME--RA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 ~eal~dADiVIi~~g~-~~k~g~~--r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+++.+.|++|..||. +-++.++ +. ..++.| ..+.+.+.+.|.+. .+|.|+.++-
T Consensus 109 k~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~--~~GHIV~IaS 173 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN--NNGHIVTIAS 173 (300)
T ss_pred HHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc--CCceEEEehh
Confidence 4677899999987774 4444432 22 123333 34678888999984 6888877763
No 460
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.65 E-value=1.3 Score=44.80 Aligned_cols=77 Identities=22% Similarity=0.251 Sum_probs=46.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch-----------------hhhHHHHHHHhhhhcCCCcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-----------------LQALEGVAMELEDSLFPLLR 158 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~-----------------~~~l~g~a~DL~d~~~~~~~ 158 (405)
..||.|+|+ |.+|+.++..|+..|+- .+.| +|.|.- ..+++..+..|.... |..
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La~~Gvg----~i~l--vD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-p~v- 98 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLAGAGVG----HITI--IDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN-PDV- 98 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCC----eEEE--EeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC-CCc-
Confidence 469999995 99999999999998872 2444 333321 124444444454443 321
Q ss_pred eEEEec------CcccccCCCcEEEEeCC
Q 015501 159 EVKIGI------NPYELFEDAEWALLIGA 181 (405)
Q Consensus 159 ~v~i~~------~~~eal~dADiVIi~~g 181 (405)
++.... +..+.++++|+||.+..
T Consensus 99 ~v~~~~~~i~~~~~~~~~~~~DvVvd~~d 127 (355)
T PRK05597 99 KVTVSVRRLTWSNALDELRDADVILDGSD 127 (355)
T ss_pred EEEEEEeecCHHHHHHHHhCCCEEEECCC
Confidence 222211 12356789999998743
No 461
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.46 E-value=1.7 Score=40.98 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.+++.|+||+|.||.+++..|++.|.
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~ 32 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGA 32 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 347899999999999999999998774
No 462
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=89.39 E-value=1 Score=45.47 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=42.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh-hh--cCC-----Cc-ceEEEecCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE-DS--LFP-----LL-REVKIGINP 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~-d~--~~~-----~~-~~v~i~~~~ 166 (405)
|+||+|+|+ |.||..++..+...+-+ ++.- + .|.+.+.....+.... +. ..+ +. ..+.+..+.
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~----eLva-v--~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~ 72 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDM----ELVG-V--AKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTI 72 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCc----EEEE-E--ECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCCh
Confidence 679999996 99999999887764322 2321 2 2333333332222110 00 000 11 135555555
Q ss_pred ccccCCCcEEEEeCC
Q 015501 167 YELFEDAEWALLIGA 181 (405)
Q Consensus 167 ~eal~dADiVIi~~g 181 (405)
.+.+.++|+||.+.+
T Consensus 73 ~el~~~vDVVIdaT~ 87 (341)
T PRK04207 73 EDLLEKADIVVDATP 87 (341)
T ss_pred hHhhccCCEEEECCC
Confidence 566689999998643
No 463
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=89.37 E-value=2.3 Score=39.11 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.5
Q ss_pred EEEEcCCCchHHHHHHHHHhccc
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|.|+|++|.+|.+++..|++.|.
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~ 23 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA 23 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC
Confidence 46899999999999999998774
No 464
>PRK07831 short chain dehydrogenase; Provisional
Probab=89.37 E-value=5.6 Score=37.57 Aligned_cols=46 Identities=22% Similarity=0.150 Sum_probs=32.7
Q ss_pred CCEEEEEcCCC-chHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAG-MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG-~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+++.|+||+| .+|..++..|+..|. .+.+ .+++.++++....++.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~-----~V~~----~~~~~~~~~~~~~~~~ 63 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA-----RVVI----SDIHERRLGETADELA 63 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 46899999887 699999999998775 2443 4555566655544444
No 465
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.33 E-value=1.4 Score=46.06 Aligned_cols=100 Identities=17% Similarity=0.117 Sum_probs=56.0
Q ss_pred hhhccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhh-hHHHHHHHhhhhcCCCcceEEEecCccc
Q 015501 90 TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDSLFPLLREVKIGINPYE 168 (405)
Q Consensus 90 ~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~-~l~g~a~DL~d~~~~~~~~v~i~~~~~e 168 (405)
++.+.+..||.|+| .|..|.+++..|...|. .+.+ .|.+.. .......+|.... ..+.......+
T Consensus 8 ~~~~~~~~~i~v~G-~G~sG~a~a~~L~~~G~-----~V~~----~D~~~~~~~~~~~~~l~~~g----i~~~~~~~~~~ 73 (458)
T PRK01710 8 FKKFIKNKKVAVVG-IGVSNIPLIKFLVKLGA-----KVTA----FDKKSEEELGEVSNELKELG----VKLVLGENYLD 73 (458)
T ss_pred HhhhhcCCeEEEEc-ccHHHHHHHHHHHHCCC-----EEEE----ECCCCCccchHHHHHHHhCC----CEEEeCCCChH
Confidence 56676678999999 59999999999998875 2444 343221 1111112233211 12222223346
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHH
Q 015501 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQ 204 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i 204 (405)
.+.++|+||.+.|.+... .........+++++.++
T Consensus 74 ~~~~~dlVV~Spgi~~~~-p~~~~a~~~~i~i~s~~ 108 (458)
T PRK01710 74 KLDGFDVIFKTPSMRIDS-PELVKAKEEGAYITSEM 108 (458)
T ss_pred HhccCCEEEECCCCCCCc-hHHHHHHHcCCcEEech
Confidence 678999999986664311 11122234556666544
No 466
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=89.32 E-value=0.37 Score=46.55 Aligned_cols=135 Identities=11% Similarity=0.060 Sum_probs=78.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccC---CCC---CceEEEeccccc--hhh--hHHHHHHHhhhhcCCCcceEEEecC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVL---GPD---QPIALKLLGSER--SLQ--ALEGVAMELEDSLFPLLREVKIGIN 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~---~~d---~~i~L~l~~~d~--~~~--~l~g~a~DL~d~~~~~~~~v~i~~~ 165 (405)
-.||.|.|| |..|-.++..|+..+.- +++ +.+ +++|..- ..+ .+......+.+.. ++-....+
T Consensus 25 d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i--~~vD~~Gll~~~r~~l~~~~~~~~~~~----~~~~~~~~ 97 (254)
T cd00762 25 EHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRI--WXVDRKGLLVKNRKETCPNEYHLARFA----NPERESGD 97 (254)
T ss_pred hcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccE--EEECCCCeEeCCCCccCHHHHHHHHHc----CcccccCC
Confidence 379999995 99999999888865431 111 123 3333321 011 1111112211111 11112357
Q ss_pred cccccC--CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh---HHHHHHHHHCCCCC
Q 015501 166 PYELFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---TNALICLKNAPSIP 240 (405)
Q Consensus 166 ~~eal~--dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d---~~t~~~~k~s~~~~ 240 (405)
..|+++ ++|++|=+.+. +|. +=+++.+.|.+++ ++.+|.-.+||.. +...-+++.+. .
T Consensus 98 L~eav~~~kptvlIG~S~~---~g~-----------ft~evv~~Ma~~~-~~PIIFaLSNPt~~aE~tpe~a~~~t~--G 160 (254)
T cd00762 98 LEDAVEAAKPDFLIGVSRV---GGA-----------FTPEVIRAXAEIN-ERPVIFALSNPTSKAECTAEEAYTATE--G 160 (254)
T ss_pred HHHHHHhhCCCEEEEeCCC---CCC-----------CCHHHHHHHhhcC-CCCEEEECCCcCCccccCHHHHHhhcC--C
Confidence 889999 99998854442 331 2245667777776 8899999999984 55566666542 2
Q ss_pred CCceeecchhhHHH
Q 015501 241 AKNFHALTRLDENR 254 (405)
Q Consensus 241 ~k~ig~gt~LDs~R 254 (405)
+.+|++|+.-..+.
T Consensus 161 ~ai~AtGspf~pv~ 174 (254)
T cd00762 161 RAIFASGSPFHPVE 174 (254)
T ss_pred CEEEEECCCCCCcc
Confidence 46788888755443
No 467
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=89.23 E-value=3.4 Score=38.24 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|.++.|+||+|.+|.+++..|++.+.
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g~ 26 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGY 26 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 45789999999999999999998764
No 468
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=89.19 E-value=5 Score=37.85 Aligned_cols=117 Identities=12% Similarity=-0.009 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-------Ccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-------NPY 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-------~~~ 167 (405)
.-..|.|.|++..||..+|..+.+.|- .+.+ ..+++++|.......-+.. ....++--.. -..
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elgN-----~VIi----~gR~e~~L~e~~~~~p~~~-t~v~Dv~d~~~~~~lvewLk 73 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELGN-----TVII----CGRNEERLAEAKAENPEIH-TEVCDVADRDSRRELVEWLK 73 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhCC-----EEEE----ecCcHHHHHHHHhcCcchh-eeeecccchhhHHHHHHHHH
Confidence 346899999999999999999998653 3544 5788787774433221111 1000111000 123
Q ss_pred cccCCCcEEEEeCCcCCCCCCc-----hh---hhH----HhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 ELFEDAEWALLIGAKPRGPGME-----RA---GLL----DINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~g~~-----r~---~ll----~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.+-+-+++|-.+|..|..... .. +.+ ..-+.+...+.+.+.+ .|++-||+||-
T Consensus 74 k~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~--q~~a~IInVSS 139 (245)
T COG3967 74 KEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLR--QPEATIINVSS 139 (245)
T ss_pred hhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCceEEEecc
Confidence 4566788999888876644332 11 112 2335567777788887 48999999983
No 469
>PRK07411 hypothetical protein; Validated
Probab=89.15 E-value=1.3 Score=45.42 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~~Gv 62 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAAAGI 62 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999987
No 470
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=89.13 E-value=1.4 Score=43.41 Aligned_cols=72 Identities=15% Similarity=0.035 Sum_probs=44.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch---hhhHHHHHHHhhhhcCCCcceEEEec-C----cc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS---LQALEGVAMELEDSLFPLLREVKIGI-N----PY 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~---~~~l~g~a~DL~d~~~~~~~~v~i~~-~----~~ 167 (405)
..++.|+|| |..+.+++..|+..+.- .|.+ .+++ .++++..+.++.+.. . ..+.+.. + ..
T Consensus 124 ~k~vlvlGa-GGaarAi~~~l~~~g~~----~i~i----~nRt~~~~~ka~~la~~~~~~~-~--~~~~~~~~~~~~~l~ 191 (288)
T PRK12749 124 GKTMVLLGA-GGASTAIGAQGAIEGLK----EIKL----FNRRDEFFDKALAFAQRVNENT-D--CVVTVTDLADQQAFA 191 (288)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCC----EEEE----EeCCccHHHHHHHHHHHhhhcc-C--ceEEEechhhhhhhh
Confidence 468999995 88899999999887652 3554 4565 346666666553321 1 1122221 1 12
Q ss_pred cccCCCcEEEEe
Q 015501 168 ELFEDAEWALLI 179 (405)
Q Consensus 168 eal~dADiVIi~ 179 (405)
+++.++|+||.+
T Consensus 192 ~~~~~aDivINa 203 (288)
T PRK12749 192 EALASADILTNG 203 (288)
T ss_pred hhcccCCEEEEC
Confidence 356789999985
No 471
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=89.10 E-value=3.2 Score=38.72 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=41.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--CcccccCCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFEDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~eal~dA 173 (405)
..||.|||+ |.+|..-+..|+..|. .|.+ ++-+.. +.++ ++.+. .+++... -..+.+.++
T Consensus 9 gk~vlVvGg-G~va~rk~~~Ll~~ga-----~VtV--vsp~~~-~~l~----~l~~~-----~~i~~~~~~~~~~dl~~~ 70 (205)
T TIGR01470 9 GRAVLVVGG-GDVALRKARLLLKAGA-----QLRV--IAEELE-SELT----LLAEQ-----GGITWLARCFDADILEGA 70 (205)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC-----EEEE--EcCCCC-HHHH----HHHHc-----CCEEEEeCCCCHHHhCCc
Confidence 469999995 9999999999998774 2444 222222 1222 22211 1333322 234678999
Q ss_pred cEEEEeCC
Q 015501 174 EWALLIGA 181 (405)
Q Consensus 174 DiVIi~~g 181 (405)
|+||.+-+
T Consensus 71 ~lVi~at~ 78 (205)
T TIGR01470 71 FLVIAATD 78 (205)
T ss_pred EEEEECCC
Confidence 99987644
No 472
>PRK06484 short chain dehydrogenase; Validated
Probab=88.98 E-value=1.2 Score=47.00 Aligned_cols=119 Identities=15% Similarity=0.115 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--C-------
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N------- 165 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~------- 165 (405)
..+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++....++.... ......++. +
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~ 336 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGD-----RLLI----IDRDAEGAKKLAEALGDEH--LSVQADITDEAAVESAFAQ 336 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCCce--eEEEccCCCHHHHHHHHHH
Confidence 357899999999999999999998875 2444 4566566654443331110 000111111 0
Q ss_pred cccccCCCcEEEEeCCcCC--CCC--Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 166 PYELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~--k~g--~~r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
..+.+...|++|..+|... .+- .+. ...+..|..-...+.+.+..+-...+.||+++.-
T Consensus 337 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~ 402 (520)
T PRK06484 337 IQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSI 402 (520)
T ss_pred HHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECch
Confidence 0112345799998877532 221 111 1234555443333333333221245778888754
No 473
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.93 E-value=1.5 Score=41.67 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=22.6
Q ss_pred CCEEEEEcC--CCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGA--AGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGA--aG~VGs~la~~L~~~~~ 121 (405)
.+++.|+|| ++.+|..++..|+..|.
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~ 34 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGA 34 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCC
Confidence 368999998 68999999999998775
No 474
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.87 E-value=1.3 Score=45.10 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~~Gv 159 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAAAGV 159 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999886
No 475
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=88.80 E-value=1.3 Score=43.31 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..+|+|+|+ |.||+.++..|+..|+
T Consensus 30 ~s~VlVvG~-GGVGs~vae~Lar~GV 54 (268)
T PRK15116 30 DAHICVVGI-GGVGSWAAEALARTGI 54 (268)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999886
No 476
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=88.72 E-value=0.43 Score=45.08 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=43.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
++|.|+||+|.+|++++..|+..+. ++.. .-++.+++.... .... ....+..-......+++|.|.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~-----~v~~----~~r~~~~~~~~~---~~v~-~~~~d~~~~~~l~~a~~G~~~~ 67 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH-----EVRA----AVRNPEAAAALA---GGVE-VVLGDLRDPKSLVAGAKGVDGV 67 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC-----EEEE----EEeCHHHHHhhc---CCcE-EEEeccCCHhHHHHHhccccEE
Confidence 5899999999999999999998853 3433 234444443222 1000 0000111112345788999998
Q ss_pred EEeCC
Q 015501 177 LLIGA 181 (405)
Q Consensus 177 Ii~~g 181 (405)
+++.+
T Consensus 68 ~~i~~ 72 (275)
T COG0702 68 LLISG 72 (275)
T ss_pred EEEec
Confidence 88754
No 477
>PRK06841 short chain dehydrogenase; Provisional
Probab=88.70 E-value=1.6 Score=40.97 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.+|++++..|++.|.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~ 40 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGA 40 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998774
No 478
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=88.65 E-value=1.1 Score=44.67 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=51.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|.||+.+|..+..-|+ .|.- +|+.... . +. . +. ..+..+.++.||+
T Consensus 145 gktvGIiG-~G~IG~~vA~~~~~fgm-----~V~~----~d~~~~~-----~---~~--~----~~-~~~l~ell~~sDv 199 (311)
T PRK08410 145 GKKWGIIG-LGTIGKRVAKIAQAFGA-----KVVY----YSTSGKN-----K---NE--E----YE-RVSLEELLKTSDI 199 (311)
T ss_pred CCEEEEEC-CCHHHHHHHHHHhhcCC-----EEEE----ECCCccc-----c---cc--C----ce-eecHHHHhhcCCE
Confidence 47999999 69999999988875443 2322 3442111 0 00 1 11 1356788999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++.. |..+. +| .+ -|.+. +... +|++++||++=
T Consensus 200 v~lh~--Plt~~-T~-~l--i~~~~-------~~~M-k~~a~lIN~aR 233 (311)
T PRK08410 200 ISIHA--PLNEK-TK-NL--IAYKE-------LKLL-KDGAILINVGR 233 (311)
T ss_pred EEEeC--CCCch-hh-cc--cCHHH-------HHhC-CCCeEEEECCC
Confidence 99863 32221 11 11 12222 2332 58999999983
No 479
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=88.55 E-value=2.9 Score=41.54 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=43.9
Q ss_pred CCCEEEEEcCC--CchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC
Q 015501 95 KMVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (405)
Q Consensus 95 ~~~KI~IIGAa--G~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (405)
+-.||+++|-. ++|..+++..+...|+ ++.+ .. ...-+.-..+.....+ ...+++++.+..+++++
T Consensus 149 ~g~~va~vGD~~~~~v~~Sl~~~~a~~g~-----~v~~--~~-P~~~~~~~~~~~~~~~----~G~~v~~~~d~~~a~~~ 216 (301)
T TIGR00670 149 DGLKIALVGDLKYGRTVHSLAEALTRFGV-----EVYL--IS-PEELRMPKEILEELKA----KGIKVRETESLEEVIDE 216 (301)
T ss_pred CCCEEEEEccCCCCcHHHHHHHHHHHcCC-----EEEE--EC-CccccCCHHHHHHHHH----cCCEEEEECCHHHHhCC
Confidence 35899999953 5888888888877553 2332 21 1111111111111111 22467788889999999
Q ss_pred CcEEEEe
Q 015501 173 AEWALLI 179 (405)
Q Consensus 173 ADiVIi~ 179 (405)
||+|...
T Consensus 217 aDvvyt~ 223 (301)
T TIGR00670 217 ADVLYVT 223 (301)
T ss_pred CCEEEEC
Confidence 9998774
No 480
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=88.47 E-value=1.1 Score=44.27 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
||.|+|| |.+|+.++..|+..|+
T Consensus 1 kVlVVGa-GGlG~eilknLal~Gv 23 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSGF 23 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCC
Confidence 6899995 9999999999999986
No 481
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=88.46 E-value=1.8 Score=39.18 Aligned_cols=65 Identities=25% Similarity=0.244 Sum_probs=38.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+.++|+|||. |.-|...+..|-..|+ .+.+-+. +. .+-...|.+ + .+ .+ .+..|+.+.||
T Consensus 3 ~~k~IAViGy-GsQG~a~AlNLrDSG~-----~V~Vglr--~~--s~s~~~A~~--~---Gf----~v-~~~~eAv~~aD 62 (165)
T PF07991_consen 3 KGKTIAVIGY-GSQGHAHALNLRDSGV-----NVIVGLR--EG--SASWEKAKA--D---GF----EV-MSVAEAVKKAD 62 (165)
T ss_dssp CTSEEEEES--SHHHHHHHHHHHHCC------EEEEEE---TT--CHHHHHHHH--T---T-----EC-CEHHHHHHC-S
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCC-----CEEEEec--CC--CcCHHHHHH--C---CC----ee-ccHHHHHhhCC
Confidence 3579999996 9999999999999886 2444222 11 111112221 1 11 11 24579999999
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+|++.
T Consensus 63 vV~~L 67 (165)
T PF07991_consen 63 VVMLL 67 (165)
T ss_dssp EEEE-
T ss_pred EEEEe
Confidence 99987
No 482
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=88.43 E-value=3.4 Score=36.90 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+-++|.|||| |.||...+..|+..+.
T Consensus 12 ~~~~vlVvGG-G~va~rka~~Ll~~ga 37 (157)
T PRK06719 12 HNKVVVIIGG-GKIAYRKASGLKDTGA 37 (157)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC
Confidence 3579999996 9999999999998764
No 483
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=88.41 E-value=0.98 Score=43.58 Aligned_cols=94 Identities=22% Similarity=0.270 Sum_probs=54.8
Q ss_pred EEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccccc--CCCcEEEE
Q 015501 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF--EDAEWALL 178 (405)
Q Consensus 101 IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal--~dADiVIi 178 (405)
|+||+|+||++++..|+..+. .+.+ + .... ..|+.+.. ...+.+ .+.|+||.
T Consensus 2 ItGa~GfiG~~l~~~L~~~g~-----~v~~-~--~~~~-------~~Dl~~~~-----------~l~~~~~~~~~d~Vih 55 (306)
T PLN02725 2 VAGHRGLVGSAIVRKLEALGF-----TNLV-L--RTHK-------ELDLTRQA-----------DVEAFFAKEKPTYVIL 55 (306)
T ss_pred cccCCCcccHHHHHHHHhCCC-----cEEE-e--eccc-------cCCCCCHH-----------HHHHHHhccCCCEEEE
Confidence 899999999999999988653 1222 1 1110 12222211 011112 25799998
Q ss_pred eCCcCCC---CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 179 IGAKPRG---PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 179 ~~g~~~k---~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+++.... ......+....|......+.+.+++.. . ..+|.++
T Consensus 56 ~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~~i~~S 100 (306)
T PLN02725 56 AAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHG-V-KKLLFLG 100 (306)
T ss_pred eeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcC-C-CeEEEeC
Confidence 8764321 112344567789888999999988852 2 2455554
No 484
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=88.30 E-value=1.7 Score=42.74 Aligned_cols=71 Identities=21% Similarity=0.220 Sum_probs=47.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dAD 174 (405)
-.++.|+|| |..+.++++.|++.+.. +|.+ .+++.++++..+..+.+.. . .+... ..+.+...++|
T Consensus 126 ~~~vlilGA-GGAarAv~~aL~~~g~~----~i~V----~NRt~~ra~~La~~~~~~~-~---~~~~~~~~~~~~~~~~d 192 (283)
T COG0169 126 GKRVLILGA-GGAARAVAFALAEAGAK----RITV----VNRTRERAEELADLFGELG-A---AVEAAALADLEGLEEAD 192 (283)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHhhhcc-c---ccccccccccccccccC
Confidence 478999995 99999999999998862 3655 6788788776766554332 1 11111 12333333799
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+||.+
T Consensus 193 liINa 197 (283)
T COG0169 193 LLINA 197 (283)
T ss_pred EEEEC
Confidence 99985
No 485
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=88.30 E-value=0.81 Score=44.45 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAG 119 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~ 119 (405)
|+||+|+||+|.+|..++..+...
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~ 24 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA 24 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC
Confidence 479999997799999999998865
No 486
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=88.23 E-value=1.7 Score=43.31 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
||.|+|+ |.+|+.++..|+..|+
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gv 23 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGF 23 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcC
Confidence 6899995 9999999999999886
No 487
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=88.20 E-value=1.7 Score=41.46 Aligned_cols=23 Identities=35% Similarity=0.366 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
||.|+|+ |.+|+.++..|+..|+
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gv 23 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGF 23 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCC
Confidence 6899995 9999999999999886
No 488
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.18 E-value=6.4 Score=42.97 Aligned_cols=136 Identities=10% Similarity=0.014 Sum_probs=74.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-Cc-----ccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP-----YEL 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~-----~ea 169 (405)
..+|.|+|+ |.+|+.++..|...+. ++.+ +|.|+++.+... + . . .++..+. .+ ...
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~-----~vvv----ID~d~~~v~~~~-~---~--g--~~v~~GDat~~~~L~~ag 461 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGV-----KMTV----LDHDPDHIETLR-K---F--G--MKVFYGDATRMDLLESAG 461 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCC-----CEEE----EECCHHHHHHHH-h---c--C--CeEEEEeCCCHHHHHhcC
Confidence 368999995 9999999999998765 3444 466666655332 1 1 1 1222221 12 246
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-CchhHHHHHHHHHCCCCCCCceeecc
Q 015501 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTNALICLKNAPSIPAKNFHALT 248 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP~d~~t~~~~k~s~~~~~k~ig~gt 248 (405)
+.+||.+|++-..+ ..| ..++..+++.. |+..+++-+ |+.+ .+.+ +..+ .+ .+---+
T Consensus 462 i~~A~~vvv~~~d~-----------~~n----~~i~~~ar~~~-p~~~iiaRa~d~~~--~~~L-~~~G-ad--~v~~e~ 519 (621)
T PRK03562 462 AAKAEVLINAIDDP-----------QTS----LQLVELVKEHF-PHLQIIARARDVDH--YIRL-RQAG-VE--KPERET 519 (621)
T ss_pred CCcCCEEEEEeCCH-----------HHH----HHHHHHHHHhC-CCCeEEEEECCHHH--HHHH-HHCC-CC--EEehhh
Confidence 67899988874321 334 33444556653 887666544 4422 2223 2332 21 221222
Q ss_pred hhhHHHHHHHHHHHhCCCCCCce
Q 015501 249 RLDENRAKCQLALKAGVFYDKVS 271 (405)
Q Consensus 249 ~LDs~R~~~~lA~~l~v~~~~V~ 271 (405)
.-.+.++-+.+-+.+|+++++++
T Consensus 520 ~e~sl~l~~~~L~~lg~~~~~~~ 542 (621)
T PRK03562 520 FEGALKSGRLVLESLGLGPYEAR 542 (621)
T ss_pred HhHHHHHHHHHHHHcCCCHHHHH
Confidence 22245666677777787766554
No 489
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=88.07 E-value=1.5 Score=44.81 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~Gv 65 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASAGV 65 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999886
No 490
>PRK06523 short chain dehydrogenase; Provisional
Probab=87.97 E-value=1.6 Score=41.05 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.||++++..|+..|.
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~ 34 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGA 34 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCC
Confidence 36899999999999999999998764
No 491
>PLN02306 hydroxypyruvate reductase
Probab=87.96 E-value=1.1 Score=46.02 Aligned_cols=104 Identities=12% Similarity=0.033 Sum_probs=53.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHH-hcccCCCCCceEEEeccccchhh-hHHHHHHHhhhh---cCCCcceEEEecCccccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDS---LFPLLREVKIGINPYELF 170 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~-~~~~~~~d~~i~L~l~~~d~~~~-~l~g~a~DL~d~---~~~~~~~v~i~~~~~eal 170 (405)
-++|+||| .|.||+.+|..+. ..|+ .|.. +|+... ........+... .......+....+..+.+
T Consensus 165 gktvGIiG-~G~IG~~vA~~l~~~fGm-----~V~~----~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell 234 (386)
T PLN02306 165 GQTVGVIG-AGRIGSAYARMMVEGFKM-----NLIY----YDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVL 234 (386)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCC-----EEEE----ECCCCchhhhhhhhhhcccccccccccccccccCCHHHHH
Confidence 37999999 6999999999875 3333 2322 344321 111111111000 000000112224677889
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.||+|++.. |..+ .|..++.. +.+... +|++.+||++=
T Consensus 235 ~~sDiV~lh~--Plt~---------~T~~lin~--~~l~~M-K~ga~lIN~aR 273 (386)
T PLN02306 235 READVISLHP--VLDK---------TTYHLINK--ERLALM-KKEAVLVNASR 273 (386)
T ss_pred hhCCEEEEeC--CCCh---------hhhhhcCH--HHHHhC-CCCeEEEECCC
Confidence 9999999862 3211 11111111 223333 58899999983
No 492
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=87.87 E-value=0.55 Score=50.34 Aligned_cols=133 Identities=14% Similarity=0.109 Sum_probs=78.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc-----ccCCCCCceEEEeccccch--h---hhHHHHHHHhhhhcCCCcceEEEecC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAG-----EVLGPDQPIALKLLGSERS--L---QALEGVAMELEDSLFPLLREVKIGIN 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~-----~~~~~d~~i~L~l~~~d~~--~---~~l~g~a~DL~d~~~~~~~~v~i~~~ 165 (405)
-.||.|.|| |..|-.++..|+.. |+-.++..-.+.++|.+-- . +.+......+.+. .....+
T Consensus 321 d~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~-------~~~~~~ 392 (581)
T PLN03129 321 DQRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHD-------HEPGAS 392 (581)
T ss_pred hceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhh-------cccCCC
Confidence 479999995 99999999888873 4311111112334433210 1 1122222222211 112356
Q ss_pred cccccCC--CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch---hHHHHHHHHHCCCCC
Q 015501 166 PYELFED--AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPSIP 240 (405)
Q Consensus 166 ~~eal~d--ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~---d~~t~~~~k~s~~~~ 240 (405)
..|++++ +|++|=+.+. +|. +=.++.+.|.+++ ++.+|.-.+||. ++...-+++.+.+
T Consensus 393 L~e~v~~vkptvLIG~S~~---~g~-----------Ft~evi~~Ma~~~-~rPIIFaLSNPt~~~E~~pe~a~~~T~G-- 455 (581)
T PLN03129 393 LLEAVKAIKPTVLIGLSGV---GGT-----------FTKEVLEAMASLN-ERPIIFALSNPTSKAECTAEEAYTWTGG-- 455 (581)
T ss_pred HHHHHhccCCCEEEEecCC---CCC-----------CCHHHHHHHHhcC-CCCEEEECCCCCCCcCcCHHHHHHhhcC--
Confidence 8899999 8998754432 221 2235666777775 889999999996 6666667666532
Q ss_pred CCceeecchhhHH
Q 015501 241 AKNFHALTRLDEN 253 (405)
Q Consensus 241 ~k~ig~gt~LDs~ 253 (405)
+-+|.+|+-.+..
T Consensus 456 ~ai~AtGSPf~pv 468 (581)
T PLN03129 456 RAIFASGSPFDPV 468 (581)
T ss_pred CEEEEeCCCCCCe
Confidence 3578888765543
No 493
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=87.84 E-value=0.55 Score=53.91 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=44.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCC------CCC-ceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLG------PDQ-PIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN 165 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~------~d~-~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~ 165 (405)
.+|.||+|+|| |.||+..+..|+..+-+. +++ .+.+.+ .|.+.+.++..+..+... ..+.+ ..+
T Consensus 567 ~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~V--aD~~~~~a~~la~~~~~~-----~~v~lDv~D 638 (1042)
T PLN02819 567 KKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIV--ASLYLKDAKETVEGIENA-----EAVQLDVSD 638 (1042)
T ss_pred ccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEE--ECCCHHHHHHHHHhcCCC-----ceEEeecCC
Confidence 45889999995 999999999998754321 110 112222 455556655444432111 11223 122
Q ss_pred ---cccccCCCcEEEEeC
Q 015501 166 ---PYELFEDAEWALLIG 180 (405)
Q Consensus 166 ---~~eal~dADiVIi~~ 180 (405)
..+.++++|+||.+.
T Consensus 639 ~e~L~~~v~~~DaVIsal 656 (1042)
T PLN02819 639 SESLLKYVSQVDVVISLL 656 (1042)
T ss_pred HHHHHHhhcCCCEEEECC
Confidence 223346899999863
No 494
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.79 E-value=3.6 Score=44.75 Aligned_cols=137 Identities=14% Similarity=0.092 Sum_probs=76.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-Cc-----ccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP-----YEL 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~-----~ea 169 (405)
..+|.|+|. |.+|+.++..|...+. ++.+ +|.|+++.+.. .+ .. .++..+. .+ ...
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~-----~vvv----ID~d~~~v~~~-~~---~g----~~v~~GDat~~~~L~~ag 461 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKM-----RITV----LERDISAVNLM-RK---YG----YKVYYGDATQLELLRAAG 461 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCC-----CEEE----EECCHHHHHHH-Hh---CC----CeEEEeeCCCHHHHHhcC
Confidence 368999995 9999999999988765 3544 56666665522 22 11 1222221 11 245
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEE-eCCchhHHHHHHHHHCCCCCCCceeecc
Q 015501 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIV-VGNPCNTNALICLKNAPSIPAKNFHALT 248 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIv-vtNP~d~~t~~~~k~s~~~~~k~ig~gt 248 (405)
+.+||.+|++-+.+ ..| ..++..++++. |+..++. +.|+.+. +.+. ..+ . ..+--=|
T Consensus 462 i~~A~~vv~~~~d~-----------~~n----~~i~~~~r~~~-p~~~IiaRa~~~~~~--~~L~-~~G-a--~~vv~e~ 519 (601)
T PRK03659 462 AEKAEAIVITCNEP-----------EDT----MKIVELCQQHF-PHLHILARARGRVEA--HELL-QAG-V--TQFSRET 519 (601)
T ss_pred CccCCEEEEEeCCH-----------HHH----HHHHHHHHHHC-CCCeEEEEeCCHHHH--HHHH-hCC-C--CEEEccH
Confidence 77999988874321 233 33455566764 8876554 4466432 3333 332 2 1221222
Q ss_pred hhhHHHHHHHHHHHhCCCCCCcee
Q 015501 249 RLDENRAKCQLALKAGVFYDKVSN 272 (405)
Q Consensus 249 ~LDs~R~~~~lA~~l~v~~~~V~~ 272 (405)
..-+..+-...=..+|++++++..
T Consensus 520 ~es~l~l~~~~L~~lg~~~~~~~~ 543 (601)
T PRK03659 520 FSSALELGRKTLVSLGMHPHQAQR 543 (601)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHH
Confidence 222345666666677888777753
No 495
>PRK06398 aldose dehydrogenase; Validated
Probab=87.78 E-value=1.2 Score=42.24 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~ 31 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGS 31 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998774
No 496
>PRK07578 short chain dehydrogenase; Provisional
Probab=87.75 E-value=1.9 Score=39.03 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAG 119 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~ 119 (405)
|++.|+||+|.+|.+++..|++.
T Consensus 1 ~~vlItGas~giG~~la~~l~~~ 23 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR 23 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc
Confidence 47999999999999999999876
No 497
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=87.73 E-value=2 Score=41.61 Aligned_cols=132 Identities=15% Similarity=0.071 Sum_probs=72.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc----ccCCCC--CceEEEeccccc----hhhhHHHHHHHhhhhcCCCcceEEEecC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAG----EVLGPD--QPIALKLLGSER----SLQALEGVAMELEDSLFPLLREVKIGIN 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~----~~~~~d--~~i~L~l~~~d~----~~~~l~g~a~DL~d~~~~~~~~v~i~~~ 165 (405)
-.||.|.|| |..|-.++..|+.. |+=.++ ..|.+ +|.+- +.+.+......+.+...+. ....+
T Consensus 25 d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~l--vD~~Gll~~~r~~l~~~~~~~a~~~~~~----~~~~~ 97 (255)
T PF03949_consen 25 DQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWL--VDSKGLLTDDREDLNPHKKPFARKTNPE----KDWGS 97 (255)
T ss_dssp G-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEE--EETTEEEBTTTSSHSHHHHHHHBSSSTT----T--SS
T ss_pred HcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEE--EeccceEeccCccCChhhhhhhccCccc----ccccC
Confidence 379999995 99999999988876 652100 23443 22220 1122333333333322111 11157
Q ss_pred cccccCCC--cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh---HHHHHHHHHCCCCC
Q 015501 166 PYELFEDA--EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---TNALICLKNAPSIP 240 (405)
Q Consensus 166 ~~eal~dA--DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d---~~t~~~~k~s~~~~ 240 (405)
..|+++++ |++|=+.+. +| -+=+++.+.|.+++ ++.+|.-.+||.. +...-+++.+.+
T Consensus 98 L~eav~~~kPtvLIG~S~~---~g-----------~ft~evv~~Ma~~~-erPIIF~LSNPt~~aE~~peda~~~t~g-- 160 (255)
T PF03949_consen 98 LLEAVKGAKPTVLIGLSGQ---GG-----------AFTEEVVRAMAKHN-ERPIIFPLSNPTPKAECTPEDAYEWTDG-- 160 (255)
T ss_dssp HHHHHHCH--SEEEECSSS---TT-----------SS-HHHHHHCHHHS-SSEEEEE-SSSCGGSSS-HHHHHHTTTS--
T ss_pred HHHHHHhcCCCEEEEecCC---CC-----------cCCHHHHHHHhccC-CCCEEEECCCCCCcccCCHHHHHhhCCc--
Confidence 78999999 998855443 33 12346777788886 8999999999985 444555555422
Q ss_pred CCceeecchhh
Q 015501 241 AKNFHALTRLD 251 (405)
Q Consensus 241 ~k~ig~gt~LD 251 (405)
+-+|.+|+-.+
T Consensus 161 ~ai~AtGSpf~ 171 (255)
T PF03949_consen 161 RAIFATGSPFP 171 (255)
T ss_dssp EEEEEESS---
T ss_pred eEEEecCCccC
Confidence 23367776533
No 498
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=87.72 E-value=1.3 Score=47.41 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=39.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
++|+||| .|.||..+|..|...|+ .+.. +|+.... ..+.++ . +....+..+.+++||+|
T Consensus 139 ktvgIiG-~G~IG~~vA~~l~~fG~-----~V~~----~d~~~~~--~~~~~~-----g----~~~~~~l~ell~~aDvV 197 (525)
T TIGR01327 139 KTLGVIG-LGRIGSIVAKRAKAFGM-----KVLA----YDPYISP--ERAEQL-----G----VELVDDLDELLARADFI 197 (525)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EEEE----ECCCCCh--hHHHhc-----C----CEEcCCHHHHHhhCCEE
Confidence 6999999 69999999999987554 2322 3442111 112221 1 12223567889999999
Q ss_pred EEe
Q 015501 177 LLI 179 (405)
Q Consensus 177 Ii~ 179 (405)
++.
T Consensus 198 ~l~ 200 (525)
T TIGR01327 198 TVH 200 (525)
T ss_pred EEc
Confidence 986
No 499
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.69 E-value=3.4 Score=44.04 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=31.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
..+.||.|+|| |.+|...+..+...|. .|.. +|.+.++++ .+.++
T Consensus 163 ~pg~kVlViGa-G~iGL~Ai~~Ak~lGA-----~V~a----~D~~~~rle-~aesl 207 (509)
T PRK09424 163 VPPAKVLVIGA-GVAGLAAIGAAGSLGA-----IVRA----FDTRPEVAE-QVESM 207 (509)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHH-HHHHc
Confidence 35789999995 9999998888877664 1433 466666655 44443
No 500
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.67 E-value=0.56 Score=46.64 Aligned_cols=48 Identities=29% Similarity=0.254 Sum_probs=39.5
Q ss_pred CcceeeEEeeccchhHhhhhccCCCEEEEEcCCCchHHHHHHHHHhcccC
Q 015501 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVL 122 (405)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~ 122 (405)
++-|-|++-+.-+.+|-.+.... -||.|||| |..|-.+...|+..|..
T Consensus 18 ~r~gpf~~~~f~~~~e~l~~l~~-~kiLviGA-GGLGCElLKnLal~gF~ 65 (422)
T KOG2015|consen 18 ERPGPFNLDAFEPSEENLEFLQD-CKILVIGA-GGLGCELLKNLALSGFR 65 (422)
T ss_pred cCCCCCCCCCCCCCHHHHHHHhh-CcEEEEcc-CcccHHHHHhHHhhccc
Confidence 44578888888888887666555 79999995 99999999999998874
Done!