Query 015502
Match_columns 405
No_of_seqs 151 out of 1791
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 06:54:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 99.9 9.4E-25 2E-29 192.2 24.1 220 131-373 1-230 (230)
2 KOG4441 Proteins containing BT 99.9 1.2E-21 2.6E-26 191.9 26.6 247 105-384 302-558 (571)
3 PHA02713 hypothetical protein; 99.9 1.6E-21 3.5E-26 191.7 22.8 247 105-380 273-542 (557)
4 KOG4441 Proteins containing BT 99.8 4.1E-18 9E-23 167.1 20.5 220 133-383 282-511 (571)
5 PLN03215 ascorbic acid mannose 99.8 5.7E-17 1.2E-21 147.4 22.7 294 42-379 4-354 (373)
6 PHA02713 hypothetical protein; 99.8 1.7E-17 3.8E-22 163.3 20.1 209 147-384 272-502 (557)
7 PHA03098 kelch-like protein; P 99.8 4.4E-17 9.5E-22 161.5 23.0 247 108-384 268-524 (534)
8 PHA02790 Kelch-like protein; P 99.8 9.9E-17 2.1E-21 155.8 20.9 201 132-378 268-477 (480)
9 PLN02153 epithiospecifier prot 99.8 8.2E-16 1.8E-20 143.5 26.1 248 112-379 5-292 (341)
10 PLN02193 nitrile-specifier pro 99.7 7.7E-15 1.7E-19 142.2 27.5 246 114-382 151-421 (470)
11 TIGR03547 muta_rot_YjhT mutatr 99.7 2.9E-15 6.2E-20 140.3 23.3 238 130-383 12-310 (346)
12 PHA02790 Kelch-like protein; P 99.7 7.5E-16 1.6E-20 149.6 19.5 188 105-327 288-476 (480)
13 PRK14131 N-acetylneuraminic ac 99.7 6.8E-14 1.5E-18 132.1 27.7 263 93-377 39-374 (376)
14 PHA03098 kelch-like protein; P 99.7 1.2E-14 2.7E-19 144.1 22.3 208 105-333 312-523 (534)
15 PRK14131 N-acetylneuraminic ac 99.7 2.4E-14 5.1E-19 135.3 22.0 237 130-383 33-332 (376)
16 TIGR03548 mutarot_permut cycli 99.6 1E-13 2.2E-18 128.5 25.2 226 130-383 8-291 (323)
17 TIGR03547 muta_rot_YjhT mutatr 99.6 9.4E-14 2E-18 130.1 24.7 243 94-360 19-329 (346)
18 PLN02153 epithiospecifier prot 99.6 2.7E-13 5.8E-18 126.6 24.6 216 105-330 51-293 (341)
19 TIGR03548 mutarot_permut cycli 99.5 1E-12 2.2E-17 121.8 18.5 222 115-360 52-311 (323)
20 PLN02193 nitrile-specifier pro 99.5 3.2E-12 7E-17 124.0 22.6 210 105-332 194-421 (470)
21 KOG4693 Uncharacterized conser 99.1 3E-09 6.6E-14 90.2 15.8 231 106-359 46-309 (392)
22 PF08268 FBA_3: F-box associat 99.1 2.7E-09 5.8E-14 84.7 12.1 109 235-357 1-118 (129)
23 KOG4693 Uncharacterized conser 99.0 1.8E-08 3.8E-13 85.7 14.1 217 147-379 44-284 (392)
24 PF12937 F-box-like: F-box-lik 98.9 9.3E-10 2E-14 70.2 3.9 42 42-83 1-42 (47)
25 KOG1230 Protein containing rep 98.9 4.3E-08 9.3E-13 88.3 14.1 219 147-379 98-348 (521)
26 KOG0379 Kelch repeat-containin 98.9 2.1E-07 4.5E-12 90.5 19.3 213 148-382 89-312 (482)
27 KOG0379 Kelch repeat-containin 98.8 7.2E-07 1.6E-11 86.8 19.3 212 106-332 90-312 (482)
28 smart00256 FBOX A Receptor for 98.7 1E-08 2.2E-13 63.4 3.6 39 45-83 1-39 (41)
29 PF00646 F-box: F-box domain; 98.7 1.9E-08 4.2E-13 64.6 3.6 43 43-85 4-46 (48)
30 PF07734 FBA_1: F-box associat 98.7 8.9E-07 1.9E-11 73.3 14.0 131 235-380 1-148 (164)
31 KOG1230 Protein containing rep 98.6 4.9E-06 1.1E-10 75.3 17.5 150 176-330 70-224 (521)
32 KOG0281 Beta-TrCP (transducin 98.1 0.00054 1.2E-08 60.9 17.3 38 43-80 76-117 (499)
33 KOG4152 Host cell transcriptio 98.0 0.00061 1.3E-08 63.8 17.0 121 230-360 200-340 (830)
34 COG3055 Uncharacterized protei 97.8 0.0012 2.7E-08 59.2 15.9 173 147-334 58-268 (381)
35 COG3055 Uncharacterized protei 97.5 0.014 3E-07 52.8 16.9 219 106-334 60-339 (381)
36 PF13964 Kelch_6: Kelch motif 97.5 0.0004 8.7E-09 44.6 5.5 40 129-168 5-49 (50)
37 PF01344 Kelch_1: Kelch motif; 97.3 0.00074 1.6E-08 42.7 4.9 44 287-332 4-47 (47)
38 KOG2120 SCF ubiquitin ligase, 97.2 0.00028 6E-09 62.1 3.7 39 42-80 98-136 (419)
39 KOG0274 Cdc4 and related F-box 97.2 0.17 3.6E-06 50.1 22.5 42 41-82 107-148 (537)
40 PF13964 Kelch_6: Kelch motif 97.0 0.0013 2.8E-08 42.2 4.5 45 287-333 4-48 (50)
41 PF01344 Kelch_1: Kelch motif; 96.9 0.0019 4.1E-08 40.7 4.2 40 231-272 3-42 (47)
42 KOG2997 F-box protein FBX9 [Ge 96.8 0.0011 2.4E-08 58.5 3.3 81 5-85 69-155 (366)
43 PF07646 Kelch_2: Kelch motif; 96.7 0.0037 8E-08 39.9 4.8 45 288-332 5-49 (49)
44 PF07646 Kelch_2: Kelch motif; 96.5 0.0052 1.1E-07 39.2 4.4 42 231-272 3-44 (49)
45 KOG4152 Host cell transcriptio 96.4 0.023 5.1E-07 53.6 9.6 138 180-322 209-362 (830)
46 smart00612 Kelch Kelch domain. 95.3 0.036 7.8E-07 34.5 4.3 47 188-240 1-47 (47)
47 PF05096 Glu_cyclase_2: Glutam 95.3 0.68 1.5E-05 40.9 13.4 166 205-400 67-241 (264)
48 PF13418 Kelch_4: Galactose ox 95.0 0.054 1.2E-06 34.3 4.4 32 352-383 12-49 (49)
49 smart00612 Kelch Kelch domain. 94.9 0.071 1.5E-06 33.1 4.8 46 241-294 1-46 (47)
50 PF07893 DUF1668: Protein of u 94.9 0.73 1.6E-05 43.0 13.3 128 238-386 75-224 (342)
51 PF13360 PQQ_2: PQQ-like domai 94.8 2.5 5.4E-05 36.8 24.3 186 134-377 35-236 (238)
52 KOG2437 Muskelin [Signal trans 94.3 0.067 1.5E-06 50.5 4.9 171 151-327 233-418 (723)
53 KOG2437 Muskelin [Signal trans 94.1 0.06 1.3E-06 50.8 4.1 159 215-379 238-420 (723)
54 PF13418 Kelch_4: Galactose ox 94.1 0.06 1.3E-06 34.1 3.0 40 231-272 3-43 (49)
55 PF10282 Lactonase: Lactonase, 94.1 5.2 0.00011 37.4 20.7 246 105-384 16-290 (345)
56 PF07250 Glyoxal_oxid_N: Glyox 93.6 1.7 3.7E-05 38.2 11.9 156 207-384 47-211 (243)
57 PLN02772 guanylate kinase 93.6 0.38 8.3E-06 45.1 8.3 80 231-321 26-106 (398)
58 PF07250 Glyoxal_oxid_N: Glyox 93.0 1.2 2.6E-05 39.1 10.1 154 148-334 47-211 (243)
59 KOG4341 F-box protein containi 92.6 0.089 1.9E-06 48.9 2.6 43 37-80 68-110 (483)
60 PRK11138 outer membrane biogen 92.5 10 0.00022 36.2 21.1 180 134-374 119-315 (394)
61 PF07893 DUF1668: Protein of u 92.5 2.5 5.5E-05 39.4 12.3 128 130-273 71-214 (342)
62 PF13415 Kelch_3: Galactose ox 92.3 0.29 6.2E-06 31.0 4.1 43 239-287 1-43 (49)
63 PF13415 Kelch_3: Galactose ox 92.1 0.2 4.3E-06 31.7 3.1 40 294-334 1-40 (49)
64 PF02897 Peptidase_S9_N: Proly 91.5 14 0.0003 35.5 19.5 147 206-379 252-412 (414)
65 PF13854 Kelch_5: Kelch motif 90.4 0.6 1.3E-05 28.4 4.0 38 229-267 4-41 (42)
66 PF02191 OLF: Olfactomedin-lik 90.1 5.9 0.00013 35.1 11.4 138 231-400 70-229 (250)
67 smart00284 OLF Olfactomedin-li 89.8 4.7 0.0001 35.6 10.4 137 232-400 76-234 (255)
68 COG4257 Vgb Streptogramin lyas 89.3 9.5 0.00021 33.9 11.6 116 130-271 194-310 (353)
69 PF08450 SGL: SMP-30/Gluconola 89.1 15 0.00032 32.3 19.4 202 134-382 10-223 (246)
70 KOG0293 WD40 repeat-containing 87.2 26 0.00057 32.9 15.3 179 147-375 291-474 (519)
71 TIGR03300 assembly_YfgL outer 87.1 27 0.00059 32.9 25.2 213 104-377 75-305 (377)
72 PRK11138 outer membrane biogen 86.9 29 0.00063 33.0 24.2 105 233-376 250-358 (394)
73 PF10282 Lactonase: Lactonase, 86.1 29 0.00063 32.4 19.4 118 240-380 204-333 (345)
74 PF08450 SGL: SMP-30/Gluconola 84.4 27 0.00059 30.6 19.6 219 100-359 18-244 (246)
75 PF13360 PQQ_2: PQQ-like domai 82.4 31 0.00068 29.7 12.7 108 235-375 32-144 (238)
76 PF06433 Me-amine-dh_H: Methyl 82.3 42 0.00091 31.1 13.9 83 288-377 240-326 (342)
77 COG4946 Uncharacterized protei 81.6 52 0.0011 31.7 13.7 149 233-400 229-454 (668)
78 KOG0316 Conserved WD40 repeat- 81.4 35 0.00077 29.6 14.7 97 146-269 80-176 (307)
79 PF05096 Glu_cyclase_2: Glutam 81.3 26 0.00057 31.1 10.7 106 238-373 54-159 (264)
80 PF13854 Kelch_5: Kelch motif 81.0 3.6 7.8E-05 24.9 3.9 37 282-321 2-38 (42)
81 TIGR01640 F_box_assoc_1 F-box 80.6 37 0.00081 29.4 16.8 162 207-382 15-188 (230)
82 COG4257 Vgb Streptogramin lyas 80.1 44 0.00095 29.9 17.0 222 108-380 87-314 (353)
83 TIGR02658 TTQ_MADH_Hv methylam 79.8 54 0.0012 30.7 21.5 75 294-375 259-334 (352)
84 TIGR03866 PQQ_ABC_repeats PQQ- 79.6 44 0.00096 29.7 24.7 197 133-376 39-242 (300)
85 KOG0310 Conserved WD40 repeat- 79.3 61 0.0013 31.1 13.9 173 153-374 8-187 (487)
86 KOG2055 WD40 repeat protein [G 79.1 61 0.0013 31.0 13.6 138 146-322 279-418 (514)
87 TIGR03300 assembly_YfgL outer 78.2 61 0.0013 30.5 14.9 128 134-302 240-369 (377)
88 TIGR02658 TTQ_MADH_Hv methylam 77.9 33 0.00072 32.1 10.9 112 258-377 27-142 (352)
89 PTZ00420 coronin; Provisional 76.4 90 0.0019 31.5 20.2 46 350-400 272-317 (568)
90 KOG2502 Tub family proteins [G 74.1 3.2 7E-05 37.8 3.1 40 40-79 43-90 (355)
91 PF03022 MRJP: Major royal jel 73.2 24 0.00052 32.0 8.6 88 293-381 10-107 (287)
92 PLN02772 guanylate kinase 71.7 11 0.00025 35.5 6.2 57 188-247 36-94 (398)
93 KOG1445 Tumor-specific antigen 70.7 46 0.001 33.2 10.0 125 258-402 742-872 (1012)
94 TIGR03075 PQQ_enz_alc_DH PQQ-d 70.2 42 0.00092 33.5 10.3 113 233-377 63-195 (527)
95 TIGR03866 PQQ_ABC_repeats PQQ- 70.1 79 0.0017 28.0 25.5 55 313-375 229-283 (300)
96 KOG2055 WD40 repeat protein [G 68.8 1.1E+02 0.0024 29.3 13.3 97 258-373 280-376 (514)
97 PF12458 DUF3686: ATPase invol 67.6 65 0.0014 30.6 10.0 64 240-320 320-383 (448)
98 cd01206 Homer Homer type EVH1 67.1 17 0.00036 27.3 5.0 41 147-194 11-52 (111)
99 PRK11028 6-phosphogluconolacto 66.8 1.1E+02 0.0023 28.2 27.1 111 258-379 148-268 (330)
100 PTZ00421 coronin; Provisional 66.0 1.4E+02 0.0031 29.5 21.8 48 349-401 268-315 (493)
101 PF07433 DUF1513: Protein of u 65.1 1.1E+02 0.0024 27.9 22.2 226 136-382 17-258 (305)
102 KOG0289 mRNA splicing factor [ 64.4 1.4E+02 0.0029 28.6 15.7 122 234-384 352-475 (506)
103 COG3823 Glutamine cyclotransfe 64.3 93 0.002 26.7 11.9 159 205-401 67-240 (262)
104 PF13570 PQQ_3: PQQ-like domai 63.3 9.9 0.00021 22.5 2.8 25 234-267 16-40 (40)
105 PF03178 CPSF_A: CPSF A subuni 62.8 73 0.0016 29.3 9.9 75 289-381 93-169 (321)
106 PF12768 Rax2: Cortical protei 62.2 1.1E+02 0.0023 27.8 10.3 113 205-330 15-130 (281)
107 cd01207 Ena-Vasp Enabled-VASP- 62.2 23 0.00049 26.9 5.0 43 147-193 9-51 (111)
108 TIGR03074 PQQ_membr_DH membran 61.4 1.3E+02 0.0029 31.6 12.1 31 232-271 187-219 (764)
109 PF09372 PRANC: PRANC domain; 58.5 9.6 0.00021 28.1 2.6 25 40-64 70-94 (97)
110 COG3386 Gluconolactonase [Carb 57.6 1.6E+02 0.0034 27.1 11.2 49 239-301 36-84 (307)
111 PLN02919 haloacid dehalogenase 57.0 3.1E+02 0.0066 30.3 22.1 74 292-375 812-892 (1057)
112 PF13013 F-box-like_2: F-box-l 56.7 15 0.00033 27.8 3.3 27 44-70 24-50 (109)
113 KOG0291 WD40-repeat-containing 56.1 2.5E+02 0.0054 29.0 22.4 209 131-399 315-530 (893)
114 TIGR02276 beta_rpt_yvtn 40-res 55.0 41 0.00089 19.7 4.6 25 351-375 2-26 (42)
115 COG2706 3-carboxymuconate cycl 53.7 1.9E+02 0.0041 26.9 13.7 115 257-386 166-291 (346)
116 COG2706 3-carboxymuconate cycl 53.5 1.9E+02 0.0041 26.8 23.8 159 206-384 167-336 (346)
117 PF07762 DUF1618: Protein of u 51.5 75 0.0016 24.7 6.8 71 259-333 7-98 (131)
118 COG1520 FOG: WD40-like repeat 51.1 2.2E+02 0.0047 26.8 12.6 133 208-377 37-177 (370)
119 cd00216 PQQ_DH Dehydrogenases 51.0 2.5E+02 0.0054 27.7 11.8 30 233-271 55-86 (488)
120 PF09826 Beta_propel: Beta pro 49.7 2.8E+02 0.0061 27.7 13.5 135 256-399 246-390 (521)
121 PF01011 PQQ: PQQ enzyme repea 49.6 51 0.0011 19.2 4.4 24 353-377 1-24 (38)
122 TIGR03032 conserved hypothetic 47.7 2.3E+02 0.005 26.1 12.4 128 235-384 108-244 (335)
123 KOG0281 Beta-TrCP (transducin 44.5 2.6E+02 0.0057 25.9 12.2 140 206-373 340-479 (499)
124 KOG2321 WD40 repeat protein [G 44.2 2.3E+02 0.005 28.3 9.7 61 239-323 145-207 (703)
125 PF03478 DUF295: Protein of un 43.3 28 0.00061 22.3 2.6 20 351-370 31-54 (54)
126 TIGR03075 PQQ_enz_alc_DH PQQ-d 42.3 3.7E+02 0.0079 26.9 21.0 60 207-269 131-192 (527)
127 PF02239 Cytochrom_D1: Cytochr 42.2 99 0.0021 29.2 7.2 95 258-375 16-112 (369)
128 KOG0289 mRNA splicing factor [ 42.1 3.2E+02 0.007 26.2 16.8 102 207-333 370-474 (506)
129 PF13859 BNR_3: BNR repeat-lik 41.9 1.2E+02 0.0026 27.9 7.4 134 235-381 126-279 (310)
130 KOG0310 Conserved WD40 repeat- 38.2 3.9E+02 0.0083 26.0 13.0 108 238-380 164-275 (487)
131 KOG0639 Transducin-like enhanc 37.6 1.2E+02 0.0026 29.5 6.7 55 258-324 440-498 (705)
132 smart00564 PQQ beta-propeller 36.3 76 0.0016 17.3 4.3 26 351-377 5-30 (33)
133 KOG0286 G-protein beta subunit 34.8 3.5E+02 0.0077 24.6 15.7 136 147-323 77-219 (343)
134 PRK00178 tolB translocation pr 34.7 4.2E+02 0.0091 25.4 20.3 188 146-379 222-414 (430)
135 KOG0315 G-protein beta subunit 34.6 3.3E+02 0.0072 24.2 14.9 187 138-374 11-200 (311)
136 COG3823 Glutamine cyclotransfe 34.5 1.5E+02 0.0032 25.5 6.1 79 289-384 50-130 (262)
137 PF12768 Rax2: Cortical protei 34.4 3.5E+02 0.0077 24.5 10.6 107 258-380 16-130 (281)
138 KOG0266 WD40 repeat-containing 33.8 4.6E+02 0.0099 25.6 12.3 97 258-376 225-323 (456)
139 KOG1036 Mitotic spindle checkp 31.9 4E+02 0.0087 24.3 12.0 30 344-374 137-166 (323)
140 PF00568 WH1: WH1 domain; Int 31.6 1.7E+02 0.0037 22.0 5.7 39 147-193 16-55 (111)
141 PF03088 Str_synth: Strictosid 31.3 84 0.0018 22.8 3.7 18 362-379 36-53 (89)
142 PF15408 PH_7: Pleckstrin homo 31.0 31 0.00067 24.5 1.4 24 59-82 76-99 (104)
143 PRK05137 tolB translocation pr 30.5 5E+02 0.011 25.0 21.4 188 146-379 225-420 (435)
144 KOG2321 WD40 repeat protein [G 29.2 4.3E+02 0.0094 26.5 8.9 29 131-161 183-211 (703)
145 KOG0283 WD40 repeat-containing 27.2 7.2E+02 0.016 25.8 16.4 104 133-271 378-486 (712)
146 PRK04792 tolB translocation pr 27.2 5.9E+02 0.013 24.7 22.8 187 146-379 241-433 (448)
147 TIGR02800 propeller_TolB tol-p 27.0 5.4E+02 0.012 24.3 19.9 188 147-379 214-405 (417)
148 TIGR03032 conserved hypothetic 25.6 2E+02 0.0044 26.4 5.9 59 229-303 202-260 (335)
149 KOG1310 WD40 repeat protein [G 25.2 5.8E+02 0.013 25.5 9.0 111 134-267 60-179 (758)
150 PF08268 FBA_3: F-box associat 24.7 2.1E+02 0.0045 22.0 5.3 66 205-272 19-86 (129)
151 PTZ00334 trans-sialidase; Prov 24.3 5.2E+02 0.011 27.2 9.1 86 235-333 265-355 (780)
152 KOG3926 F-box proteins [Amino 23.2 1E+02 0.0023 27.4 3.5 38 43-80 203-241 (332)
153 PRK11028 6-phosphogluconolacto 22.6 5.9E+02 0.013 23.2 27.1 65 313-383 250-318 (330)
154 PF08954 DUF1900: Domain of un 22.6 1.5E+02 0.0033 23.5 4.0 48 349-401 19-68 (136)
155 KOG1517 Guanine nucleotide bin 22.1 2.3E+02 0.0049 30.7 6.1 74 285-373 1165-1241(1387)
156 KOG0292 Vesicle coat complex C 21.9 1E+03 0.022 25.6 14.3 78 258-374 272-351 (1202)
157 KOG4378 Nuclear protein COP1 [ 21.6 2.7E+02 0.0058 27.3 6.0 53 313-375 187-243 (673)
158 PF06881 Elongin_A: RNA polyme 21.5 1E+02 0.0022 23.2 2.8 28 43-70 5-32 (109)
159 cd00837 EVH1 EVH1 (Enabled, Va 20.5 3.4E+02 0.0074 20.1 5.5 40 147-193 9-48 (104)
160 KOG0316 Conserved WD40 repeat- 20.3 6E+02 0.013 22.4 15.7 133 146-323 38-175 (307)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.94 E-value=9.4e-25 Score=192.23 Aligned_cols=220 Identities=21% Similarity=0.350 Sum_probs=148.9
Q ss_pred EEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCC-CccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEE
Q 015502 131 IASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKF-SDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIH 209 (405)
Q Consensus 131 ~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~-~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~ 209 (405)
+++||||||+... ..++||||.|++++.||+++.... .....+++++|+.+++|||+.+....... ....++
T Consensus 1 ~~sCnGLlc~~~~---~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~----~~~~~~ 73 (230)
T TIGR01640 1 VVPCDGLICFSYG---KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR----NQSEHQ 73 (230)
T ss_pred CcccceEEEEecC---CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC----CCccEE
Confidence 4789999988653 789999999999999997653211 11125789999999999999987532111 135789
Q ss_pred EEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccc---
Q 015502 210 IYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALT--- 286 (405)
Q Consensus 210 vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~--- 286 (405)
||++++++|+..... +........++++||.+||+..... ......|++||+.+++|+. .+++|....
T Consensus 74 Vys~~~~~Wr~~~~~-~~~~~~~~~~v~~~G~lyw~~~~~~---~~~~~~IvsFDl~~E~f~~-----~i~~P~~~~~~~ 144 (230)
T TIGR01640 74 VYTLGSNSWRTIECS-PPHHPLKSRGVCINGVLYYLAYTLK---TNPDYFIVSFDVSSERFKE-----FIPLPCGNSDSV 144 (230)
T ss_pred EEEeCCCCccccccC-CCCccccCCeEEECCEEEEEEEECC---CCCcEEEEEEEcccceEee-----eeecCccccccc
Confidence 999999999998632 2221222348999999999986531 1122379999999999972 255565332
Q ss_pred -cCceEEeCCcEEEEEccccccccCccceEEEEEEeC---ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-
Q 015502 287 -CGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG---KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG- 361 (405)
Q Consensus 287 -~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~---~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 361 (405)
...|++++|+|+++..... ...++||.|++ .+|++..+++......+.....+.++... +.|++....
T Consensus 145 ~~~~L~~~~G~L~~v~~~~~------~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~-g~I~~~~~~~ 217 (230)
T TIGR01640 145 DYLSLINYKGKLAVLKQKKD------TNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDK-GEIVLCCEDE 217 (230)
T ss_pred cceEEEEECCEEEEEEecCC------CCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeC-CEEEEEeCCC
Confidence 3468899999999986421 24499999984 47999998874222222111123333444 555554432
Q ss_pred -CCeEEEEECCCC
Q 015502 362 -APSLLVYDMNLK 373 (405)
Q Consensus 362 -~~~~~~Yd~~~~ 373 (405)
...++.||++++
T Consensus 218 ~~~~~~~y~~~~~ 230 (230)
T TIGR01640 218 NPFYIFYYNVGEN 230 (230)
T ss_pred CceEEEEEeccCC
Confidence 234999999875
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.90 E-value=1.2e-21 Score=191.87 Aligned_cols=247 Identities=17% Similarity=0.220 Sum_probs=190.6
Q ss_pred eeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCC-----CceEEEEeCcccceeeccCCCCCCCCccceeEEE
Q 015502 105 IGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDS-----RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLS 179 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~-----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~ 179 (405)
....||+.++.|..+.....++....+++.+|.|+..++.+ .+.+++|||.+++|..+|+|...| ..+..+.+.
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R-~~~~v~~l~ 380 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR-SDFGVAVLD 380 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc-ccceeEEEC
Confidence 56789999999999876556666667888899999998754 257999999999999999997655 323323332
Q ss_pred EeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccE
Q 015502 180 VDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHG 259 (405)
Q Consensus 180 ~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~ 259 (405)
.+||++||.... .....++.||+.+++|.... +++. .+..+..+.++|+||.+|+..+ .......
T Consensus 381 -------g~iYavGG~dg~----~~l~svE~YDp~~~~W~~va-~m~~-~r~~~gv~~~~g~iYi~GG~~~--~~~~l~s 445 (571)
T KOG4441|consen 381 -------GKLYAVGGFDGE----KSLNSVECYDPVTNKWTPVA-PMLT-RRSGHGVAVLGGKLYIIGGGDG--SSNCLNS 445 (571)
T ss_pred -------CEEEEEeccccc----cccccEEEecCCCCcccccC-CCCc-ceeeeEEEEECCEEEEEcCcCC--Cccccce
Confidence 289999986522 22457999999999999975 4433 5667788899999999997542 1224578
Q ss_pred EEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhcc
Q 015502 260 LISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGF 339 (405)
Q Consensus 260 i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~ 339 (405)
+.+|||.+++|.. ..+|+..+....+++.+|+||+++|... .....+++.|+...++|+.+..|+....
T Consensus 446 ve~YDP~t~~W~~-----~~~M~~~R~~~g~a~~~~~iYvvGG~~~---~~~~~~VE~ydp~~~~W~~v~~m~~~rs--- 514 (571)
T KOG4441|consen 446 VECYDPETNTWTL-----IAPMNTRRSGFGVAVLNGKIYVVGGFDG---TSALSSVERYDPETNQWTMVAPMTSPRS--- 514 (571)
T ss_pred EEEEcCCCCceee-----cCCcccccccceEEEECCEEEEECCccC---CCccceEEEEcCCCCceeEcccCccccc---
Confidence 9999999999984 4677777777789999999999999764 2235679999999999999988876432
Q ss_pred CCCCceeEEeeCCCEEEEEeC-----CCCeEEEEECCCCcEEEccCCCCC
Q 015502 340 GEFDDVFASSGTDDLIYIQSY-----GAPSLLVYDMNLKQWRWSHKCPVT 384 (405)
Q Consensus 340 ~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~Yd~~~~~w~~l~~~p~~ 384 (405)
..++...++.+|+... ....+.+||+++++|+.++. |..
T Consensus 515 -----~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~-~~~ 558 (571)
T KOG4441|consen 515 -----AVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE-PES 558 (571)
T ss_pred -----cccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC-ccc
Confidence 2456667889998763 24689999999999999988 544
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.89 E-value=1.6e-21 Score=191.73 Aligned_cols=247 Identities=12% Similarity=0.079 Sum_probs=177.4
Q ss_pred eeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCC-----CceEEEEeCcccceeeccCCCCCCCCccceeEEE
Q 015502 105 IGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDS-----RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLS 179 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~-----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~ 179 (405)
....||+..++|..++....++..+.++..+|.|++.++.. ...+++|||.+++|..+|+|+..+. .+..+ .
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~-~~~~~--~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRC-RFSLA--V 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhh-ceeEE--E
Confidence 35689999999998864334444455677789999987732 2568999999999999999986552 22222 2
Q ss_pred EeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCC------
Q 015502 180 VDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGA------ 253 (405)
Q Consensus 180 ~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~------ 253 (405)
.+. +||++||.... .....+++||+.+++|...+ + ++..+.....+.++|+||++|+..+...
T Consensus 350 ~~g-----~IYviGG~~~~----~~~~sve~Ydp~~~~W~~~~-~-mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~ 418 (557)
T PHA02713 350 IDD-----TIYAIGGQNGT----NVERTIECYTMGDDKWKMLP-D-MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHH 418 (557)
T ss_pred ECC-----EEEEECCcCCC----CCCceEEEEECCCCeEEECC-C-CCcccccccEEEECCEEEEEeCCCcccccccccc
Confidence 222 89999985311 11347999999999999864 3 3444555677888999999996532100
Q ss_pred ---------CCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeC-c
Q 015502 254 ---------PENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG-K 323 (405)
Q Consensus 254 ---------~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~-~ 323 (405)
......+.+||+.+++|+. ..++|..+....+++.+|+||+++|..... .....+++|+++. +
T Consensus 419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~-----v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~--~~~~~ve~Ydp~~~~ 491 (557)
T PHA02713 419 MNSIDMEEDTHSSNKVIRYDTVNNIWET-----LPNFWTGTIRPGVVSHKDDIYVVCDIKDEK--NVKTCIFRYNTNTYN 491 (557)
T ss_pred cccccccccccccceEEEECCCCCeEee-----cCCCCcccccCcEEEECCEEEEEeCCCCCC--ccceeEEEecCCCCC
Confidence 0113579999999999984 356666666677999999999999864211 1234688999998 7
Q ss_pred eeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCC--CeEEEEECCCCcEEEccC
Q 015502 324 EWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGA--PSLLVYDMNLKQWRWSHK 380 (405)
Q Consensus 324 ~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~Yd~~~~~w~~l~~ 380 (405)
+|+.+..||.... ..++...++.||+....+ ..+.+||+.+++|+.+.+
T Consensus 492 ~W~~~~~m~~~r~--------~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 492 GWELITTTESRLS--------ALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred CeeEccccCcccc--------cceeEEECCEEEEEeeecceeehhhcCcccccccchhh
Confidence 9999999987533 234555688999986422 378999999999998864
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.80 E-value=4.1e-18 Score=167.07 Aligned_cols=220 Identities=16% Similarity=0.200 Sum_probs=165.1
Q ss_pred ecCceEEEEeCCC-----CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceE
Q 015502 133 SSYGLVCFMDNDS-----RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELS 207 (405)
Q Consensus 133 s~~Gll~~~~~~~-----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~ 207 (405)
+..+.|+..++.. .+.+..+||.+++|..++++|..+. ....+.+.- +||++||... .......
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~~~-------~lYv~GG~~~---~~~~l~~ 350 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVLNG-------KLYVVGGYDS---GSDRLSS 350 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEEECC-------EEEEEccccC---CCcccce
Confidence 5556666665533 3678899999999999999986553 222222221 8999998652 1122468
Q ss_pred EEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc
Q 015502 208 IHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC 287 (405)
Q Consensus 208 ~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~ 287 (405)
++.||+.+++|+..+ .+...+.....+.++|.||++|+..| ......+.+||+.+++|+. ..+++..+..
T Consensus 351 ve~YD~~~~~W~~~a--~M~~~R~~~~v~~l~g~iYavGG~dg---~~~l~svE~YDp~~~~W~~-----va~m~~~r~~ 420 (571)
T KOG4441|consen 351 VERYDPRTNQWTPVA--PMNTKRSDFGVAVLDGKLYAVGGFDG---EKSLNSVECYDPVTNKWTP-----VAPMLTRRSG 420 (571)
T ss_pred EEEecCCCCceeccC--CccCccccceeEEECCEEEEEecccc---ccccccEEEecCCCCcccc-----cCCCCcceee
Confidence 999999999999964 25566777788999999999997653 3445689999999999984 3567766677
Q ss_pred CceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-----C
Q 015502 288 GRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-----A 362 (405)
Q Consensus 288 ~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~ 362 (405)
...++.+|+||+++|..... ....++++|+...+.|+.+..|+.... .+++...++.||+.... .
T Consensus 421 ~gv~~~~g~iYi~GG~~~~~--~~l~sve~YDP~t~~W~~~~~M~~~R~--------~~g~a~~~~~iYvvGG~~~~~~~ 490 (571)
T KOG4441|consen 421 HGVAVLGGKLYIIGGGDGSS--NCLNSVECYDPETNTWTLIAPMNTRRS--------GFGVAVLNGKIYVVGGFDGTSAL 490 (571)
T ss_pred eEEEEECCEEEEEcCcCCCc--cccceEEEEcCCCCceeecCCcccccc--------cceEEEECCEEEEECCccCCCcc
Confidence 78899999999999965432 146789999999999999999986432 23556678899988641 3
Q ss_pred CeEEEEECCCCcEEEccCCCC
Q 015502 363 PSLLVYDMNLKQWRWSHKCPV 383 (405)
Q Consensus 363 ~~~~~Yd~~~~~w~~l~~~p~ 383 (405)
..+..||+++++|..+.+++.
T Consensus 491 ~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 491 SSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred ceEEEEcCCCCceeEcccCcc
Confidence 568999999999999976654
No 5
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.78 E-value=5.7e-17 Score=147.40 Aligned_cols=294 Identities=18% Similarity=0.219 Sum_probs=160.7
Q ss_pred CCCCCHHHHHHHHhcCC-hhhhHHHhhcchhhHhhhcChhhhhhhcccCCCCCEEEEEecC-CCCeeEEecCCC---C--
Q 015502 42 DLILPDDLLERILAYLP-IASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSS-DEPIGYAYDPIL---R-- 114 (405)
Q Consensus 42 ~~~LP~dll~~Il~~Lp-~~~l~r~r~VcK~W~~~i~~~~F~~~~~~~~~~~p~l~~~~~~-~~~~~~~~d~~~---~-- 114 (405)
|++||+|||..|..+|| ..|+.|||+|||+||+.+.... . ....++.|++++.... ..+.. ..|+.. +
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 78 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K-KNPFRTRPLILFNPINPSETLT-DDRSYISRPGAF 78 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c-cCCcccccccccCcccCCCCcc-ccccccccccce
Confidence 89999999999999997 8999999999999999987421 0 1112333665532210 11100 111100 0
Q ss_pred ----eeeeccCCCCCCCCeEEEecCceEEEEeCC-CCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEE
Q 015502 115 ----KWYGIELPCIETSNWFIASSYGLVCFMDND-SRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTV 189 (405)
Q Consensus 115 ----~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~-~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv 189 (405)
..++++++ .++..|||.-.+.+ ..+.+.+.||+++.-..+|+-. . ...-+.+....+.|.|
T Consensus 79 ls~~~~~r~~~~--------~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~-l-----nll~f~v~ei~~~y~l 144 (373)
T PLN03215 79 LSRAAFFRVTLS--------SSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSES-V-----DLLEFTVSEIREAYQV 144 (373)
T ss_pred eeeeEEEEeecC--------CCCCCCcEEEEeccccCCccEecCccccCccCCCCcc-c-----eeeeeEEEEccceEEE
Confidence 01111111 13568998887654 4577899999999976666311 0 0011111111111111
Q ss_pred ----------------EEEeeeccCCCccc-cce------EEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeE
Q 015502 190 ----------------SIVKSKQVTGNFFQ-WEL------SIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLI 246 (405)
Q Consensus 190 ----------------~~~~~~~~~~~~~~-~~~------~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~ 246 (405)
+++. .. .++... ... .+..+. .++|+.+.. ........++++|++|.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~vl~i~~~g~l~~w~--~~~Wt~l~~----~~~~~~DIi~~kGkfYAvD 216 (373)
T PLN03215 145 LDWAKRRETRPGYQRSALVK-VK-EGDNHRDGVLGIGRDGKINYWD--GNVLKALKQ----MGYHFSDIIVHKGQTYALD 216 (373)
T ss_pred EecccccccccceeEEEEEE-ee-cCCCcceEEEEEeecCcEeeec--CCeeeEccC----CCceeeEEEEECCEEEEEc
Confidence 1111 00 000000 000 111122 478877642 1122346789999999996
Q ss_pred EecCCCCCCCccEEEEEECCCC--cchhhhcccccccCC-c--cccCceEEeCCcEEEEEccccccc---------cCcc
Q 015502 247 YATGGGAPENRHGLISFNLSSR--SSHALLIKSFIPVPC-A--LTCGRLMNLKEKLVMVGGIGKQDR---------PDII 312 (405)
Q Consensus 247 ~~~~~~~~~~~~~i~~fD~~~~--~w~~~~~~~~~~~p~-~--~~~~~l~~~~G~L~~v~~~~~~~~---------~~~~ 312 (405)
.. ..+.++|..-+ +...++ ...+. . ....+||++.|+|++|........ ...+
T Consensus 217 ~~---------G~l~~i~~~l~i~~v~~~i----~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t 283 (373)
T PLN03215 217 SI---------GIVYWINSDLEFSRFGTSL----DENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRT 283 (373)
T ss_pred CC---------CeEEEEecCCceeeeccee----cccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccce
Confidence 43 26777774321 111100 00011 1 123569999999999987522110 0125
Q ss_pred ceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEE------eeCCCEEEEEeCCCCeEEEEECCCCcEEEcc
Q 015502 313 KGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFAS------SGTDDLIYIQSYGAPSLLVYDMNLKQWRWSH 379 (405)
Q Consensus 313 ~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~ 379 (405)
..++||++|. .+|++|.++....+- ++.. ..+++ ...+|.||+.. +....+||+++++-..+.
T Consensus 284 ~~f~VfklD~~~~~WveV~sLgd~aLF-lG~~-~s~sv~a~e~pG~k~NcIYFtd--d~~~~v~~~~dg~~~~~~ 354 (373)
T PLN03215 284 VGFKVYKFDDELAKWMEVKTLGDNAFV-MATD-TCFSVLAHEFYGCLPNSIYFTE--DTMPKVFKLDNGNGSSIE 354 (373)
T ss_pred eEEEEEEEcCCCCcEEEecccCCeEEE-EECC-ccEEEecCCCCCccCCEEEEEC--CCcceEEECCCCCccceE
Confidence 6799999994 689999999864321 1211 11111 23589999985 457889999999866654
No 6
>PHA02713 hypothetical protein; Provisional
Probab=99.78 E-value=1.7e-17 Score=163.34 Aligned_cols=209 Identities=12% Similarity=0.149 Sum_probs=148.6
Q ss_pred ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccccc
Q 015502 147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVL 226 (405)
Q Consensus 147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~ 226 (405)
..+..|||.+++|..++++|..+. .+..+. .+. +||++||...... ....++.||+.++.|...+ + +
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~--l~~-----~IYviGG~~~~~~---~~~~v~~Yd~~~n~W~~~~-~-m 338 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHII-NYASAI--VDN-----EIIIAGGYNFNNP---SLNKVYKINIENKIHVELP-P-M 338 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCcccc-ceEEEE--ECC-----EEEEEcCCCCCCC---ccceEEEEECCCCeEeeCC-C-C
Confidence 457889999999999999886542 122222 222 7899987431111 1347899999999998864 3 3
Q ss_pred ccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccc
Q 015502 227 TGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQ 306 (405)
Q Consensus 227 ~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~ 306 (405)
+..+.....+.++|+||++|+..+ ......+.+||+.+++|+. ..++|.......+++++|+||++||....
T Consensus 339 ~~~R~~~~~~~~~g~IYviGG~~~---~~~~~sve~Ydp~~~~W~~-----~~~mp~~r~~~~~~~~~g~IYviGG~~~~ 410 (557)
T PHA02713 339 IKNRCRFSLAVIDDTIYAIGGQNG---TNVERTIECYTMGDDKWKM-----LPDMPIALSSYGMCVLDQYIYIIGGRTEH 410 (557)
T ss_pred cchhhceeEEEECCEEEEECCcCC---CCCCceEEEEECCCCeEEE-----CCCCCcccccccEEEECCEEEEEeCCCcc
Confidence 444556678889999999996532 2224579999999999984 45677766667788999999999986421
Q ss_pred cc---------------cCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCC------CeE
Q 015502 307 DR---------------PDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGA------PSL 365 (405)
Q Consensus 307 ~~---------------~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~ 365 (405)
.. ......+++|+++.++|+.+..|+..... .++...++.||+..... ..+
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~--------~~~~~~~~~IYv~GG~~~~~~~~~~v 482 (557)
T PHA02713 411 IDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR--------PGVVSHKDDIYVVCDIKDEKNVKTCI 482 (557)
T ss_pred cccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc--------CcEEEECCEEEEEeCCCCCCccceeE
Confidence 10 01245688999999999999998764321 23445678899886421 357
Q ss_pred EEEECCC-CcEEEccCCCCC
Q 015502 366 LVYDMNL-KQWRWSHKCPVT 384 (405)
Q Consensus 366 ~~Yd~~~-~~w~~l~~~p~~ 384 (405)
.+||+++ ++|+.++++|..
T Consensus 483 e~Ydp~~~~~W~~~~~m~~~ 502 (557)
T PHA02713 483 FRYNTNTYNGWELITTTESR 502 (557)
T ss_pred EEecCCCCCCeeEccccCcc
Confidence 8999999 899999988853
No 7
>PHA03098 kelch-like protein; Provisional
Probab=99.77 E-value=4.4e-17 Score=161.48 Aligned_cols=247 Identities=13% Similarity=0.130 Sum_probs=165.0
Q ss_pred EecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCC-----CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeC
Q 015502 108 AYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDS-----RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDR 182 (405)
Q Consensus 108 ~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~-----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~ 182 (405)
.|++...+|..+..... ...+.....++.|++.++.. .+.++.+||.|++|..+|+++.++. .+..+. .+.
T Consensus 268 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~-~~~~~~--~~~ 343 (534)
T PHA03098 268 TNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRK-NPGVTV--FNN 343 (534)
T ss_pred ecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccc-cceEEE--ECC
Confidence 46666777776542211 12224555677777776532 2468999999999999999875542 222222 222
Q ss_pred CCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEE
Q 015502 183 VSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLIS 262 (405)
Q Consensus 183 ~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~ 262 (405)
+|+++||... . .....+++||..+++|+... ++ +..+..+.++.++|+||++|+... .......+..
T Consensus 344 -----~lyv~GG~~~-~---~~~~~v~~yd~~~~~W~~~~-~l-p~~r~~~~~~~~~~~iYv~GG~~~--~~~~~~~v~~ 410 (534)
T PHA03098 344 -----RIYVIGGIYN-S---ISLNTVESWKPGESKWREEP-PL-IFPRYNPCVVNVNNLIYVIGGISK--NDELLKTVEC 410 (534)
T ss_pred -----EEEEEeCCCC-C---EecceEEEEcCCCCceeeCC-Cc-CcCCccceEEEECCEEEEECCcCC--CCcccceEEE
Confidence 7899987531 1 11347899999999999864 33 334555667888999999986431 1122457999
Q ss_pred EECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCC
Q 015502 263 FNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEF 342 (405)
Q Consensus 263 fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~ 342 (405)
||+.+++|+. ..++|.......++..+|+||+++|............+.+|+...++|+.+..++.....
T Consensus 411 yd~~t~~W~~-----~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~----- 480 (534)
T PHA03098 411 FSLNTNKWSK-----GSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN----- 480 (534)
T ss_pred EeCCCCeeee-----cCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccccc-----
Confidence 9999999985 345666555666788999999999864322111234578888888999999887643221
Q ss_pred CceeEEeeCCCEEEEEeCC-----CCeEEEEECCCCcEEEccCCCCC
Q 015502 343 DDVFASSGTDDLIYIQSYG-----APSLLVYDMNLKQWRWSHKCPVT 384 (405)
Q Consensus 343 ~~~~~~~~~~~~i~~~~~~-----~~~~~~Yd~~~~~w~~l~~~p~~ 384 (405)
.++...++.||+.... ...+.+||+++++|+.++..|..
T Consensus 481 ---~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 524 (534)
T PHA03098 481 ---ASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKV 524 (534)
T ss_pred ---ceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCccc
Confidence 1222247788886532 35899999999999999887653
No 8
>PHA02790 Kelch-like protein; Provisional
Probab=99.75 E-value=9.9e-17 Score=155.75 Aligned_cols=201 Identities=10% Similarity=0.055 Sum_probs=145.6
Q ss_pred EecCceEEEEeCCC----CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceE
Q 015502 132 ASSYGLVCFMDNDS----RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELS 207 (405)
Q Consensus 132 ~s~~Gll~~~~~~~----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~ 207 (405)
...++.|++.++.. ...++.|||.+++|..+|+|+.++.. ...+ ..+. +||++||... ...
T Consensus 268 ~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v--~~~~-----~iYviGG~~~-------~~s 332 (480)
T PHA02790 268 THVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGV--PANN-----KLYVVGGLPN-------PTS 332 (480)
T ss_pred EEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEE--EECC-----EEEEECCcCC-------CCc
Confidence 34677777776632 24688999999999999998765522 2222 2222 8999987531 136
Q ss_pred EEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc
Q 015502 208 IHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC 287 (405)
Q Consensus 208 ~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~ 287 (405)
++.|++.+++|...+ ++ +..+..+..+.++|+||++|+..+ ....+.+||+.+++|+. ..++|..+..
T Consensus 333 ve~ydp~~n~W~~~~-~l-~~~r~~~~~~~~~g~IYviGG~~~-----~~~~ve~ydp~~~~W~~-----~~~m~~~r~~ 400 (480)
T PHA02790 333 VERWFHGDAAWVNMP-SL-LKPRCNPAVASINNVIYVIGGHSE-----TDTTTEYLLPNHDQWQF-----GPSTYYPHYK 400 (480)
T ss_pred eEEEECCCCeEEECC-CC-CCCCcccEEEEECCEEEEecCcCC-----CCccEEEEeCCCCEEEe-----CCCCCCcccc
Confidence 899999999998864 33 344556678889999999996431 12468899999999984 3455555555
Q ss_pred CceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-----C
Q 015502 288 GRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-----A 362 (405)
Q Consensus 288 ~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~ 362 (405)
..+++.+|+||++|+. +++|+++.++|+.+..|+..... .++...++.||+.+.. .
T Consensus 401 ~~~~~~~~~IYv~GG~-----------~e~ydp~~~~W~~~~~m~~~r~~--------~~~~v~~~~IYviGG~~~~~~~ 461 (480)
T PHA02790 401 SCALVFGRRLFLVGRN-----------AEFYCESSNTWTLIDDPIYPRDN--------PELIIVDNKLLLIGGFYRGSYI 461 (480)
T ss_pred ceEEEECCEEEEECCc-----------eEEecCCCCcEeEcCCCCCCccc--------cEEEEECCEEEEECCcCCCccc
Confidence 6778999999999862 67899999999999988753321 2445568889987641 2
Q ss_pred CeEEEEECCCCcEEEc
Q 015502 363 PSLLVYDMNLKQWRWS 378 (405)
Q Consensus 363 ~~~~~Yd~~~~~w~~l 378 (405)
..+.+||+++++|+.-
T Consensus 462 ~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 462 DTIEVYNNRTYSWNIW 477 (480)
T ss_pred ceEEEEECCCCeEEec
Confidence 5799999999999754
No 9
>PLN02153 epithiospecifier protein
Probab=99.75 E-value=8.2e-16 Score=143.53 Aligned_cols=248 Identities=15% Similarity=0.107 Sum_probs=155.1
Q ss_pred CCCeeeeccCC----CCCCCCeEEEecCceEEEEeCCC------CceEEEEeCcccceeeccCCCC-CCCCccceeEEEE
Q 015502 112 ILRKWYGIELP----CIETSNWFIASSYGLVCFMDNDS------RSELYVCNPISKSWKKLEEPPG-LKFSDYSALSLSV 180 (405)
Q Consensus 112 ~~~~w~~~~~p----~~~~~~~~~~s~~Gll~~~~~~~------~~~~~v~NP~T~~~~~lP~~~~-~~~~~~~~~~~~~ 180 (405)
..+.|..+... +.++..+.+++.++.|++.++.. .+.++++|+.+++|..+++++. ++.......+..+
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~ 84 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV 84 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE
Confidence 45668776541 23444555667788888876632 1479999999999999987642 2211111112222
Q ss_pred eCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccc----cccccCCCccEEECcEEEeeEEecCCC---C
Q 015502 181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEV----LTGWRAGDESIICDGVLYFLIYATGGG---A 253 (405)
Q Consensus 181 ~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~----~~~~~~~~~~v~~~g~iy~l~~~~~~~---~ 253 (405)
+. +|+++|+..... ....+++||..+++|+.... + .+..+..+.++.++++||++++..... .
T Consensus 85 ~~-----~iyv~GG~~~~~----~~~~v~~yd~~t~~W~~~~~-~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~ 154 (341)
T PLN02153 85 GT-----KLYIFGGRDEKR----EFSDFYSYDTVKNEWTFLTK-LDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKT 154 (341)
T ss_pred CC-----EEEEECCCCCCC----ccCcEEEEECCCCEEEEecc-CCCCCCCCCceeeEEEEECCEEEEECCccCCCccCC
Confidence 22 789998753211 13478999999999987642 1 123344566788899999998653110 0
Q ss_pred CCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEcccccc-----ccCccceEEEEEEeCceeEEE
Q 015502 254 PENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQD-----RPDIIKGIGIWVLNGKEWQEV 328 (405)
Q Consensus 254 ~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~-----~~~~~~~~~vw~l~~~~W~~v 328 (405)
......+.+||+.+++|..+-. ....|..+....+++.+|+||++++..... .......+++|+++..+|+++
T Consensus 155 ~~~~~~v~~yd~~~~~W~~l~~--~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~ 232 (341)
T PLN02153 155 PERFRTIEAYNIADGKWVQLPD--PGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEV 232 (341)
T ss_pred CcccceEEEEECCCCeEeeCCC--CCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEec
Confidence 1112468999999999985311 111223344446788999999998753110 001135688888889999998
Q ss_pred ecc---ChhHHhccCCCCceeEEeeCCCEEEEEeCC--------------CCeEEEEECCCCcEEEcc
Q 015502 329 ARM---PHKFFQGFGEFDDVFASSGTDDLIYIQSYG--------------APSLLVYDMNLKQWRWSH 379 (405)
Q Consensus 329 ~~i---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------~~~~~~Yd~~~~~w~~l~ 379 (405)
..+ |... ...++...++.||+.... ...+++||+++++|+.+.
T Consensus 233 ~~~g~~P~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 233 ETTGAKPSAR--------SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred cccCCCCCCc--------ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 653 3221 112334456788876532 137899999999999986
No 10
>PLN02193 nitrile-specifier protein
Probab=99.71 E-value=7.7e-15 Score=142.21 Aligned_cols=246 Identities=15% Similarity=0.107 Sum_probs=156.7
Q ss_pred CeeeeccCC---CCCCCCeEEEecCceEEEEeCCC------CceEEEEeCcccceeeccCCC-CCCCCccceeEEEEeCC
Q 015502 114 RKWYGIELP---CIETSNWFIASSYGLVCFMDNDS------RSELYVCNPISKSWKKLEEPP-GLKFSDYSALSLSVDRV 183 (405)
Q Consensus 114 ~~w~~~~~p---~~~~~~~~~~s~~Gll~~~~~~~------~~~~~v~NP~T~~~~~lP~~~-~~~~~~~~~~~~~~~~~ 183 (405)
++|..+... +.++..+.++..++.|++.++.. ...++++|+.+++|..+|.+. .++.......+...+.
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~- 229 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGS- 229 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECC-
Confidence 789987642 23455556666777888876631 146899999999999887542 1111111112222222
Q ss_pred CCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccc-ccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEE
Q 015502 184 SHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKE-VLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLIS 262 (405)
Q Consensus 184 ~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~-~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~ 262 (405)
+|+++|+.... .....+++||+.+++|+..... ..+..+..+..+.++++||++++..+ ......+.+
T Consensus 230 ----~lYvfGG~~~~----~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~---~~~~~~~~~ 298 (470)
T PLN02193 230 ----TLYVFGGRDAS----RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSA---TARLKTLDS 298 (470)
T ss_pred ----EEEEECCCCCC----CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCC---CCCcceEEE
Confidence 78888875321 1135789999999999986421 01233555667788999999986532 223457899
Q ss_pred EECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCC
Q 015502 263 FNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEF 342 (405)
Q Consensus 263 fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~ 342 (405)
||+.+++|+.+... ..+|..+....+++.+|+||++++.... ....+.+|+++.++|+++..+......
T Consensus 299 yd~~t~~W~~~~~~--~~~~~~R~~~~~~~~~gkiyviGG~~g~----~~~dv~~yD~~t~~W~~~~~~g~~P~~----- 367 (470)
T PLN02193 299 YNIVDKKWFHCSTP--GDSFSIRGGAGLEVVQGKVWVVYGFNGC----EVDDVHYYDPVQDKWTQVETFGVRPSE----- 367 (470)
T ss_pred EECCCCEEEeCCCC--CCCCCCCCCcEEEEECCcEEEEECCCCC----ccCceEEEECCCCEEEEeccCCCCCCC-----
Confidence 99999999854211 1233334455677889999999985321 245688888888999998765211000
Q ss_pred CceeEEeeCCCEEEEEeCC--------------CCeEEEEECCCCcEEEccCCC
Q 015502 343 DDVFASSGTDDLIYIQSYG--------------APSLLVYDMNLKQWRWSHKCP 382 (405)
Q Consensus 343 ~~~~~~~~~~~~i~~~~~~--------------~~~~~~Yd~~~~~w~~l~~~p 382 (405)
....++...++.||+.... ...+.+||+++++|+.++..+
T Consensus 368 R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~ 421 (470)
T PLN02193 368 RSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFG 421 (470)
T ss_pred cceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCC
Confidence 0112334456778876431 125899999999999997543
No 11
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.71 E-value=2.9e-15 Score=140.32 Aligned_cols=238 Identities=16% Similarity=0.146 Sum_probs=148.3
Q ss_pred EEEecCceEEEEeCCCCceEEEEeC--cccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCC--ccccc
Q 015502 130 FIASSYGLVCFMDNDSRSELYVCNP--ISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGN--FFQWE 205 (405)
Q Consensus 130 ~~~s~~Gll~~~~~~~~~~~~v~NP--~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~--~~~~~ 205 (405)
..++.++.|++.++.....++++|+ .+++|..+|++|...+..+..+ ..+. +||++|+...... .....
T Consensus 12 ~~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~--~~~~-----~iYv~GG~~~~~~~~~~~~~ 84 (346)
T TIGR03547 12 TGAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAA--AIDG-----KLYVFGGIGKANSEGSPQVF 84 (346)
T ss_pred eEEEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEE--EECC-----EEEEEeCCCCCCCCCcceec
Confidence 4556688888887755577889985 7789999999874222222222 2222 7999998532110 00113
Q ss_pred eEEEEEeCCCCCcccccccccccccCCCccE-EECcEEEeeEEecCCC--C----------C------------------
Q 015502 206 LSIHIYDSDTMMWVTSWKEVLTGWRAGDESI-ICDGVLYFLIYATGGG--A----------P------------------ 254 (405)
Q Consensus 206 ~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v-~~~g~iy~l~~~~~~~--~----------~------------------ 254 (405)
..++.||+.+++|+....+ ++..+..+.++ .++|+||++++..+.. . .
T Consensus 85 ~~v~~Yd~~~~~W~~~~~~-~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (346)
T TIGR03547 85 DDVYRYDPKKNSWQKLDTR-SPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPED 163 (346)
T ss_pred ccEEEEECCCCEEecCCCC-CCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhH
Confidence 4789999999999997532 22223333344 6899999998653100 0 0
Q ss_pred -CCccEEEEEECCCCcchhhhcccccccCC-ccccCceEEeCCcEEEEEccccccccCccceEEEEEEeC--ceeEEEec
Q 015502 255 -ENRHGLISFNLSSRSSHALLIKSFIPVPC-ALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQEVAR 330 (405)
Q Consensus 255 -~~~~~i~~fD~~~~~w~~~~~~~~~~~p~-~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~v~~ 330 (405)
.....+.+||+.+++|+.+ .++|. ......++..+|+||++++..... .....+.+++++. .+|+++..
T Consensus 164 ~~~~~~v~~YDp~t~~W~~~-----~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~y~~~~~~~~W~~~~~ 236 (346)
T TIGR03547 164 YFWNKNVLSYDPSTNQWRNL-----GENPFLGTAGSAIVHKGNKLLLINGEIKPG--LRTAEVKQYLFTGGKLEWNKLPP 236 (346)
T ss_pred cCccceEEEEECCCCceeEC-----ccCCCCcCCCceEEEECCEEEEEeeeeCCC--ccchheEEEEecCCCceeeecCC
Confidence 0125799999999999853 45554 344556788999999999863221 1123455566653 59999999
Q ss_pred cChhHHhccCCCCceeEEeeCCCEEEEEeCCC----------------------CeEEEEECCCCcEEEccCCCC
Q 015502 331 MPHKFFQGFGEFDDVFASSGTDDLIYIQSYGA----------------------PSLLVYDMNLKQWRWSHKCPV 383 (405)
Q Consensus 331 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~~~~Yd~~~~~w~~l~~~p~ 383 (405)
||.......... ....+...++.||+..... ..+.+||+++++|+.++++|.
T Consensus 237 m~~~r~~~~~~~-~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~ 310 (346)
T TIGR03547 237 LPPPKSSSQEGL-AGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQ 310 (346)
T ss_pred CCCCCCCccccc-cEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCC
Confidence 875321100000 0111233577888865311 257899999999999998875
No 12
>PHA02790 Kelch-like protein; Provisional
Probab=99.71 E-value=7.5e-16 Score=149.61 Aligned_cols=188 Identities=10% Similarity=0.057 Sum_probs=140.1
Q ss_pred eeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCC-CCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCC
Q 015502 105 IGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDND-SRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRV 183 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~-~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~ 183 (405)
....|||..++|..++....++.....++.+|.|++.++. ....+..|||.+++|..+|++|.++. .+. +...++
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~-~~~--~~~~~g- 363 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC-NPA--VASINN- 363 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc-ccE--EEEECC-
Confidence 4567999999999887555555555667789999998874 23568899999999999999986552 222 223333
Q ss_pred CCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEE
Q 015502 184 SHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISF 263 (405)
Q Consensus 184 ~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~f 263 (405)
+||++||... . ...++.||+++++|+..+ + +...+..+.++.++|+||++|+ ...+|
T Consensus 364 ----~IYviGG~~~--~----~~~ve~ydp~~~~W~~~~-~-m~~~r~~~~~~~~~~~IYv~GG-----------~~e~y 420 (480)
T PHA02790 364 ----VIYVIGGHSE--T----DTTTEYLLPNHDQWQFGP-S-TYYPHYKSCALVFGRRLFLVGR-----------NAEFY 420 (480)
T ss_pred ----EEEEecCcCC--C----CccEEEEeCCCCEEEeCC-C-CCCccccceEEEECCEEEEECC-----------ceEEe
Confidence 8999988531 1 236889999999999864 3 3333445567789999999983 36789
Q ss_pred ECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEE
Q 015502 264 NLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQE 327 (405)
Q Consensus 264 D~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~ 327 (405)
|+++++|+. ..++|..+....+++.+|+||++||.... .....+++|+.+.++|+.
T Consensus 421 dp~~~~W~~-----~~~m~~~r~~~~~~v~~~~IYviGG~~~~---~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 421 CESSNTWTL-----IDDPIYPRDNPELIIVDNKLLLIGGFYRG---SYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred cCCCCcEeE-----cCCCCCCccccEEEEECCEEEEECCcCCC---cccceEEEEECCCCeEEe
Confidence 999999984 34666666677899999999999986422 124679999999999975
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.67 E-value=6.8e-14 Score=132.14 Aligned_cols=263 Identities=16% Similarity=0.133 Sum_probs=162.0
Q ss_pred CEEEEEecCCCCeeEEecCC--CCeeeecc-CCCCCCCCeEEEecCceEEEEeCCCC----------ceEEEEeCcccce
Q 015502 93 PWYFMFTSSDEPIGYAYDPI--LRKWYGIE-LPCIETSNWFIASSYGLVCFMDNDSR----------SELYVCNPISKSW 159 (405)
Q Consensus 93 p~l~~~~~~~~~~~~~~d~~--~~~w~~~~-~p~~~~~~~~~~s~~Gll~~~~~~~~----------~~~~v~NP~T~~~ 159 (405)
..++++........+.||.. .+.|..++ +|..++....+++.+|.|++.++... ..+++|||.+++|
T Consensus 39 ~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W 118 (376)
T PRK14131 39 NTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSW 118 (376)
T ss_pred CEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEE
Confidence 34444433333345677765 47898775 33334444556778899999876421 4689999999999
Q ss_pred eeccCC-CCCCCCccceeEEE-EeCCCCcEEEEEEeeeccCC--C--------------------------cc--ccceE
Q 015502 160 KKLEEP-PGLKFSDYSALSLS-VDRVSHRYTVSIVKSKQVTG--N--------------------------FF--QWELS 207 (405)
Q Consensus 160 ~~lP~~-~~~~~~~~~~~~~~-~~~~~~~ykv~~~~~~~~~~--~--------------------------~~--~~~~~ 207 (405)
..++++ |..+ ....+.. .+. +||++|+..... . .. .....
T Consensus 119 ~~~~~~~p~~~---~~~~~~~~~~~-----~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (376)
T PRK14131 119 QKLDTRSPVGL---AGHVAVSLHNG-----KAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKE 190 (376)
T ss_pred EeCCCCCCCcc---cceEEEEeeCC-----EEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCce
Confidence 999853 2211 1122222 332 899998753100 0 00 01246
Q ss_pred EEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccc-
Q 015502 208 IHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALT- 286 (405)
Q Consensus 208 ~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~- 286 (405)
+++||..++.|+... +++...+..+..+.++++||++++....+..........||+++++|..+ .++|....
T Consensus 191 v~~YD~~t~~W~~~~-~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~-----~~~p~~~~~ 264 (376)
T PRK14131 191 VLSYDPSTNQWKNAG-ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKL-----PDLPPAPGG 264 (376)
T ss_pred EEEEECCCCeeeECC-cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeec-----CCCCCCCcC
Confidence 899999999999865 34332344556677899999999753211112223455678899999853 34443221
Q ss_pred -------cCceEEeCCcEEEEEccccccc--------------cCccceEEEEEEeCceeEEEeccChhHHhccCCCCce
Q 015502 287 -------CGRLMNLKEKLVMVGGIGKQDR--------------PDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDV 345 (405)
Q Consensus 287 -------~~~l~~~~G~L~~v~~~~~~~~--------------~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~ 345 (405)
....++.+|+||++++...... ......+++|+++.++|+.+..||.....
T Consensus 265 ~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~-------- 336 (376)
T PRK14131 265 SSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAY-------- 336 (376)
T ss_pred CcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccc--------
Confidence 1124678999999998642110 00112478999999999999988864321
Q ss_pred eEEeeCCCEEEEEeCC------CCeEEEEECCCCcEEE
Q 015502 346 FASSGTDDLIYIQSYG------APSLLVYDMNLKQWRW 377 (405)
Q Consensus 346 ~~~~~~~~~i~~~~~~------~~~~~~Yd~~~~~w~~ 377 (405)
.++...++.||+.... ...+..|+++++++..
T Consensus 337 ~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 337 GVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred eEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 1334567778887531 2488899999888754
No 14
>PHA03098 kelch-like protein; Provisional
Probab=99.66 E-value=1.2e-14 Score=144.07 Aligned_cols=208 Identities=13% Similarity=0.146 Sum_probs=145.8
Q ss_pred eeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCC----CceEEEEeCcccceeeccCCCCCCCCccceeEEEE
Q 015502 105 IGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDS----RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSV 180 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~ 180 (405)
....||+.+++|..++....++..+.+++.+|.|++.++.. ...+++|||.|++|..++++|.++.. .. +...
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~--~~~~ 388 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PC--VVNV 388 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ce--EEEE
Confidence 35689999999988764444555556677789998887743 25689999999999999988765522 22 2222
Q ss_pred eCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEE
Q 015502 181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGL 260 (405)
Q Consensus 181 ~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i 260 (405)
+. +|+++||....... ...+++||..+++|+... ++ +..+..+.++.++|+||++|+..+.+.......+
T Consensus 389 ~~-----~iYv~GG~~~~~~~---~~~v~~yd~~t~~W~~~~-~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v 458 (534)
T PHA03098 389 NN-----LIYVIGGISKNDEL---LKTVECFSLNTNKWSKGS-PL-PISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIV 458 (534)
T ss_pred CC-----EEEEECCcCCCCcc---cceEEEEeCCCCeeeecC-CC-CccccCceEEEECCEEEEECCccCCCCCcccceE
Confidence 22 78998874322111 357899999999999874 33 3334556778889999999865321111113459
Q ss_pred EEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccCh
Q 015502 261 ISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPH 333 (405)
Q Consensus 261 ~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~ 333 (405)
.+||+.+++|+.+ .++|.......++..+|+||+++|.... .....+++|+++.++|+.+..+|.
T Consensus 459 ~~yd~~~~~W~~~-----~~~~~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 459 ESYNPVTNKWTEL-----SSLNFPRINASLCIFNNKIYVVGGDKYE---YYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred EEecCCCCceeeC-----CCCCcccccceEEEECCEEEEEcCCcCC---cccceeEEEeCCCCEEEecCCCcc
Confidence 9999999999853 3445445555678889999999986422 124568899888999999988775
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.65 E-value=2.4e-14 Score=135.28 Aligned_cols=237 Identities=15% Similarity=0.100 Sum_probs=143.3
Q ss_pred EEEecCceEEEEeCCCCceEEEEeCc--ccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCC--ccccc
Q 015502 130 FIASSYGLVCFMDNDSRSELYVCNPI--SKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGN--FFQWE 205 (405)
Q Consensus 130 ~~~s~~Gll~~~~~~~~~~~~v~NP~--T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~--~~~~~ 205 (405)
..++.++-|++.++.....++++|+. +++|..+|++|...+..+..+ ..+. +||++|+...... .....
T Consensus 33 ~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v--~~~~-----~IYV~GG~~~~~~~~~~~~~ 105 (376)
T PRK14131 33 TGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAA--FIDG-----KLYVFGGIGKTNSEGSPQVF 105 (376)
T ss_pred eEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEE--EECC-----EEEEEcCCCCCCCCCceeEc
Confidence 45567888888766545678888875 579999998764222222222 2222 7899987532110 01113
Q ss_pred eEEEEEeCCCCCcccccccccccccCCCccEE-ECcEEEeeEEecCC--CC-----------------------------
Q 015502 206 LSIHIYDSDTMMWVTSWKEVLTGWRAGDESII-CDGVLYFLIYATGG--GA----------------------------- 253 (405)
Q Consensus 206 ~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~-~~g~iy~l~~~~~~--~~----------------------------- 253 (405)
..+++||..+++|+.... ..+..+..+.++. ++++||++|+..+. ..
T Consensus 106 ~~v~~YD~~~n~W~~~~~-~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (376)
T PRK14131 106 DDVYKYDPKTNSWQKLDT-RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPED 184 (376)
T ss_pred ccEEEEeCCCCEEEeCCC-CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhh
Confidence 468999999999999753 2222233344444 79999999864310 00
Q ss_pred CCCccEEEEEECCCCcchhhhcccccccCC-ccccCceEEeCCcEEEEEccccccccCccceEEEEEEe--CceeEEEec
Q 015502 254 PENRHGLISFNLSSRSSHALLIKSFIPVPC-ALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLN--GKEWQEVAR 330 (405)
Q Consensus 254 ~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~-~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~--~~~W~~v~~ 330 (405)
......+.+||+.+++|+.+ .++|. ......++..+++||++++..... .....+.+++++ +.+|+++..
T Consensus 185 ~~~~~~v~~YD~~t~~W~~~-----~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~--~~~~~~~~~~~~~~~~~W~~~~~ 257 (376)
T PRK14131 185 YFFNKEVLSYDPSTNQWKNA-----GESPFLGTAGSAVVIKGNKLWLINGEIKPG--LRTDAVKQGKFTGNNLKWQKLPD 257 (376)
T ss_pred cCcCceEEEEECCCCeeeEC-----CcCCCCCCCcceEEEECCEEEEEeeeECCC--cCChhheEEEecCCCcceeecCC
Confidence 00125799999999999852 34553 344455778899999999853221 112233344443 479999999
Q ss_pred cChhHHhccCCCCceeE--EeeCCCEEEEEeCCC----------------------CeEEEEECCCCcEEEccCCCC
Q 015502 331 MPHKFFQGFGEFDDVFA--SSGTDDLIYIQSYGA----------------------PSLLVYDMNLKQWRWSHKCPV 383 (405)
Q Consensus 331 i~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~----------------------~~~~~Yd~~~~~w~~l~~~p~ 383 (405)
||........ ....+ ....++.||+..... ..+.+||+++++|+.++.+|.
T Consensus 258 ~p~~~~~~~~--~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~ 332 (376)
T PRK14131 258 LPPAPGGSSQ--EGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQ 332 (376)
T ss_pred CCCCCcCCcC--CccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCC
Confidence 8753211000 00111 123466788765311 135689999999999988775
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.65 E-value=1e-13 Score=128.50 Aligned_cols=226 Identities=14% Similarity=0.098 Sum_probs=140.6
Q ss_pred EEEecCceEEEEeCCCC--------------ceEEEEe-Cccc-ceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEe
Q 015502 130 FIASSYGLVCFMDNDSR--------------SELYVCN-PISK-SWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVK 193 (405)
Q Consensus 130 ~~~s~~Gll~~~~~~~~--------------~~~~v~N-P~T~-~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~ 193 (405)
.++..++.|++.++.+. ..+++++ +..+ +|..++++|.++.. ...+ ..+. +|+++|
T Consensus 8 ~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~-~~~~--~~~~-----~lyviG 79 (323)
T TIGR03548 8 YAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAY-GASV--SVEN-----GIYYIG 79 (323)
T ss_pred eeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccc-eEEE--EECC-----EEEEEc
Confidence 45556666777665321 2577774 5433 79999988765532 2222 2222 688888
Q ss_pred eeccCCCccccceEEEEEeCCCCCc----ccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc
Q 015502 194 SKQVTGNFFQWELSIHIYDSDTMMW----VTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS 269 (405)
Q Consensus 194 ~~~~~~~~~~~~~~~~vy~s~~~~W----~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~ 269 (405)
+.... .....++.||..++.| ... .++ +..+..+.+++++++||++++.. .......+.+||+.+++
T Consensus 80 G~~~~----~~~~~v~~~d~~~~~w~~~~~~~-~~l-p~~~~~~~~~~~~~~iYv~GG~~---~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 80 GSNSS----ERFSSVYRITLDESKEELICETI-GNL-PFTFENGSACYKDGTLYVGGGNR---NGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCCCC----CCceeEEEEEEcCCceeeeeeEc-CCC-CcCccCceEEEECCEEEEEeCcC---CCccCceEEEEcCCCCC
Confidence 74311 1135788999999988 333 233 33344566788899999998642 12234679999999999
Q ss_pred chhhhcccccccCC-ccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEE
Q 015502 270 SHALLIKSFIPVPC-ALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFAS 348 (405)
Q Consensus 270 w~~~~~~~~~~~p~-~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~ 348 (405)
|+.+ .++|. .+....++..+|+||++++.... ....+.+|++++++|+.+..|+....... .....++
T Consensus 151 W~~~-----~~~p~~~r~~~~~~~~~~~iYv~GG~~~~----~~~~~~~yd~~~~~W~~~~~~~~~~~p~~--~~~~~~~ 219 (323)
T TIGR03548 151 WFEL-----PDFPGEPRVQPVCVKLQNELYVFGGGSNI----AYTDGYKYSPKKNQWQKVADPTTDSEPIS--LLGAASI 219 (323)
T ss_pred eeEC-----CCCCCCCCCcceEEEECCEEEEEcCCCCc----cccceEEEecCCCeeEECCCCCCCCCcee--ccceeEE
Confidence 9853 33443 34444567899999999986421 12346788888899999887642100000 0011123
Q ss_pred eeCCCEEEEEeCC-------------------------------------CCeEEEEECCCCcEEEccCCCC
Q 015502 349 SGTDDLIYIQSYG-------------------------------------APSLLVYDMNLKQWRWSHKCPV 383 (405)
Q Consensus 349 ~~~~~~i~~~~~~-------------------------------------~~~~~~Yd~~~~~w~~l~~~p~ 383 (405)
...++.||+.... ...+.+||+++++|+.++.+|.
T Consensus 220 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 291 (323)
T TIGR03548 220 KINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPF 291 (323)
T ss_pred EECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccc
Confidence 3356677776431 1469999999999999987763
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.64 E-value=9.4e-14 Score=130.09 Aligned_cols=243 Identities=15% Similarity=0.148 Sum_probs=149.2
Q ss_pred EEEEEecCCCCeeEEecC--CCCeeeeccC-CCCCCCCeEEEecCceEEEEeCCC----------CceEEEEeCccccee
Q 015502 94 WYFMFTSSDEPIGYAYDP--ILRKWYGIEL-PCIETSNWFIASSYGLVCFMDNDS----------RSELYVCNPISKSWK 160 (405)
Q Consensus 94 ~l~~~~~~~~~~~~~~d~--~~~~w~~~~~-p~~~~~~~~~~s~~Gll~~~~~~~----------~~~~~v~NP~T~~~~ 160 (405)
.+++.........+.||+ ..++|..++. |..++....+++.+|.|++.++.. ...+++|||.+++|.
T Consensus 19 ~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~ 98 (346)
T TIGR03547 19 KVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ 98 (346)
T ss_pred EEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEe
Confidence 344433322234566775 5678998763 333455556778899999987642 146899999999999
Q ss_pred eccC-CCCCCCCccceeEE-EEeCCCCcEEEEEEeeeccCC--Cc----------------------------cccceEE
Q 015502 161 KLEE-PPGLKFSDYSALSL-SVDRVSHRYTVSIVKSKQVTG--NF----------------------------FQWELSI 208 (405)
Q Consensus 161 ~lP~-~~~~~~~~~~~~~~-~~~~~~~~ykv~~~~~~~~~~--~~----------------------------~~~~~~~ 208 (405)
.++. +|..+ ....++ ..+. +|+++|+..... .. ......+
T Consensus 99 ~~~~~~p~~~---~~~~~~~~~~g-----~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (346)
T TIGR03547 99 KLDTRSPVGL---LGASGFSLHNG-----QAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNV 170 (346)
T ss_pred cCCCCCCCcc---cceeEEEEeCC-----EEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceE
Confidence 9974 33222 222222 2232 899998753110 00 0012479
Q ss_pred EEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEE--ECCCCcchhhhcccccccCCcc-
Q 015502 209 HIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISF--NLSSRSSHALLIKSFIPVPCAL- 285 (405)
Q Consensus 209 ~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~f--D~~~~~w~~~~~~~~~~~p~~~- 285 (405)
++||+.+++|+... +++...+..+..+.++|+||++++.... ......+..| |+++++|+.+ .++|...
T Consensus 171 ~~YDp~t~~W~~~~-~~p~~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~~y~~~~~~~~W~~~-----~~m~~~r~ 242 (346)
T TIGR03547 171 LSYDPSTNQWRNLG-ENPFLGTAGSAIVHKGNKLLLINGEIKP--GLRTAEVKQYLFTGGKLEWNKL-----PPLPPPKS 242 (346)
T ss_pred EEEECCCCceeECc-cCCCCcCCCceEEEECCEEEEEeeeeCC--CccchheEEEEecCCCceeeec-----CCCCCCCC
Confidence 99999999999974 4433234455667889999999975321 1111234444 5577799853 3444322
Q ss_pred ------ccCceEEeCCcEEEEEccccccc--------------cCccceEEEEEEeCceeEEEeccChhHHhccCCCCce
Q 015502 286 ------TCGRLMNLKEKLVMVGGIGKQDR--------------PDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDV 345 (405)
Q Consensus 286 ------~~~~l~~~~G~L~~v~~~~~~~~--------------~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~ 345 (405)
....+++.+|+||++++...... ......+++|+++.++|+.+..||.... .
T Consensus 243 ~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~--------~ 314 (346)
T TIGR03547 243 SSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLA--------Y 314 (346)
T ss_pred CccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCce--------e
Confidence 11236788999999998642110 0012368999999999999999986422 1
Q ss_pred eEEeeCCCEEEEEeC
Q 015502 346 FASSGTDDLIYIQSY 360 (405)
Q Consensus 346 ~~~~~~~~~i~~~~~ 360 (405)
.++...++.||+...
T Consensus 315 ~~~~~~~~~iyv~GG 329 (346)
T TIGR03547 315 GVSVSWNNGVLLIGG 329 (346)
T ss_pred eEEEEcCCEEEEEec
Confidence 233456888888763
No 18
>PLN02153 epithiospecifier protein
Probab=99.61 E-value=2.7e-13 Score=126.63 Aligned_cols=216 Identities=13% Similarity=0.097 Sum_probs=134.4
Q ss_pred eeEEecCCCCeeeeccCC-CCCCC---CeEEEecCceEEEEeCCC----CceEEEEeCcccceeeccCC-----CCCCCC
Q 015502 105 IGYAYDPILRKWYGIELP-CIETS---NWFIASSYGLVCFMDNDS----RSELYVCNPISKSWKKLEEP-----PGLKFS 171 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~p-~~~~~---~~~~~s~~Gll~~~~~~~----~~~~~v~NP~T~~~~~lP~~-----~~~~~~ 171 (405)
..+.||+..++|..++.. ..++. .+.+++.++.|++.++.. ...++++||.|++|..++++ |..+ .
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R-~ 129 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR-T 129 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc-e
Confidence 467899999999987532 23332 234667788888887632 24789999999999999876 3222 1
Q ss_pred ccceeEEEEeCCCCcEEEEEEeeeccCCCc--cccceEEEEEeCCCCCcccccccc-cccccCCCccEEECcEEEeeEEe
Q 015502 172 DYSALSLSVDRVSHRYTVSIVKSKQVTGNF--FQWELSIHIYDSDTMMWVTSWKEV-LTGWRAGDESIICDGVLYFLIYA 248 (405)
Q Consensus 172 ~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~--~~~~~~~~vy~s~~~~W~~~~~~~-~~~~~~~~~~v~~~g~iy~l~~~ 248 (405)
.+ .+...+. +|+++|+....+.. ......+++||.++++|...+... ++..+..+..+.++|++|++++.
T Consensus 130 ~~--~~~~~~~-----~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 202 (341)
T PLN02153 130 FH--SMASDEN-----HVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGF 202 (341)
T ss_pred ee--EEEEECC-----EEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecc
Confidence 11 2222222 78999875422110 011246899999999999865311 12334455677889999999864
Q ss_pred cC-----CCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEcccccc-----c-cCccceEEE
Q 015502 249 TG-----GGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQD-----R-PDIIKGIGI 317 (405)
Q Consensus 249 ~~-----~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~-----~-~~~~~~~~v 317 (405)
.+ .........+.+||+.+++|+.+.. ...+|..+....+++.+++||++++..... . ......+.+
T Consensus 203 ~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~--~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~ 280 (341)
T PLN02153 203 ATSILPGGKSDYESNAVQFFDPASGKWTEVET--TGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYA 280 (341)
T ss_pred ccccccCCccceecCceEEEEcCCCcEEeccc--cCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEE
Confidence 21 0011123579999999999986421 123455555556788899999999853210 0 001224555
Q ss_pred EEEeCceeEEEec
Q 015502 318 WVLNGKEWQEVAR 330 (405)
Q Consensus 318 w~l~~~~W~~v~~ 330 (405)
++++.++|+.+..
T Consensus 281 ~d~~~~~W~~~~~ 293 (341)
T PLN02153 281 LDTETLVWEKLGE 293 (341)
T ss_pred EEcCccEEEeccC
Confidence 5555789998863
No 19
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.51 E-value=1e-12 Score=121.84 Aligned_cols=222 Identities=13% Similarity=0.050 Sum_probs=136.6
Q ss_pred eeeeccCCCCCCCCeEEEecCceEEEEeCCC----CceEEEEeCcccce----eeccCCCCCCCCccceeEEEEeCCCCc
Q 015502 115 KWYGIELPCIETSNWFIASSYGLVCFMDNDS----RSELYVCNPISKSW----KKLEEPPGLKFSDYSALSLSVDRVSHR 186 (405)
Q Consensus 115 ~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~----~~~~~v~NP~T~~~----~~lP~~~~~~~~~~~~~~~~~~~~~~~ 186 (405)
+|..+.....++.....++.++.|++.++.. ...++.+|+.+++| ..+|++|..+.. +. +...+.
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~-~~--~~~~~~---- 124 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFEN-GS--ACYKDG---- 124 (323)
T ss_pred eEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccC-ce--EEEECC----
Confidence 6877653233333344555677777776532 25789999999987 778888755422 22 222222
Q ss_pred EEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECC
Q 015502 187 YTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLS 266 (405)
Q Consensus 187 ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~ 266 (405)
+|+++|+... .. ....+++||..+++|.... +++...+..+..+.++++||++++..+ .....+.+||+.
T Consensus 125 -~iYv~GG~~~-~~---~~~~v~~yd~~~~~W~~~~-~~p~~~r~~~~~~~~~~~iYv~GG~~~----~~~~~~~~yd~~ 194 (323)
T TIGR03548 125 -TLYVGGGNRN-GK---PSNKSYLFNLETQEWFELP-DFPGEPRVQPVCVKLQNELYVFGGGSN----IAYTDGYKYSPK 194 (323)
T ss_pred -EEEEEeCcCC-Cc---cCceEEEEcCCCCCeeECC-CCCCCCCCcceEEEECCEEEEEcCCCC----ccccceEEEecC
Confidence 7999887421 11 1357899999999999864 333223445556788999999986431 122357899999
Q ss_pred CCcchhhhcccccccCCcc-ccCceEEeCCcEEEEEccccccc-----------------------------cCccceEE
Q 015502 267 SRSSHALLIKSFIPVPCAL-TCGRLMNLKEKLVMVGGIGKQDR-----------------------------PDIIKGIG 316 (405)
Q Consensus 267 ~~~w~~~~~~~~~~~p~~~-~~~~l~~~~G~L~~v~~~~~~~~-----------------------------~~~~~~~~ 316 (405)
+++|+.+......+.|... ....++..+|+||++++...... ......++
T Consensus 195 ~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 274 (323)
T TIGR03548 195 KNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKIL 274 (323)
T ss_pred CCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEE
Confidence 9999854211111223222 22334556799999998642100 00124689
Q ss_pred EEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC
Q 015502 317 IWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY 360 (405)
Q Consensus 317 vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 360 (405)
+|++..++|+.+..+|.... ...++...++.||+...
T Consensus 275 ~yd~~~~~W~~~~~~p~~~r-------~~~~~~~~~~~iyv~GG 311 (323)
T TIGR03548 275 IYNVRTGKWKSIGNSPFFAR-------CGAALLLTGNNIFSING 311 (323)
T ss_pred EEECCCCeeeEccccccccc-------CchheEEECCEEEEEec
Confidence 99999999999987763211 11233446778888764
No 20
>PLN02193 nitrile-specifier protein
Probab=99.51 E-value=3.2e-12 Score=124.00 Aligned_cols=210 Identities=12% Similarity=0.137 Sum_probs=136.5
Q ss_pred eeEEecCCCCeeeeccCCC-CCC---CCeEEEecCceEEEEeCCC----CceEEEEeCcccceeeccCC---CCCCCCcc
Q 015502 105 IGYAYDPILRKWYGIELPC-IET---SNWFIASSYGLVCFMDNDS----RSELYVCNPISKSWKKLEEP---PGLKFSDY 173 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~p~-~~~---~~~~~~s~~Gll~~~~~~~----~~~~~v~NP~T~~~~~lP~~---~~~~~~~~ 173 (405)
..+.||+.+++|..++... .+. ..+..++.++.|++.++.. .+.++++||.|++|..++++ |.++.
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~--- 270 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRS--- 270 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCcc---
Confidence 3678999999999765321 222 2334566788888877632 25799999999999999876 33331
Q ss_pred ceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccc-ccccccCCCccEEECcEEEeeEEecCCC
Q 015502 174 SALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKE-VLTGWRAGDESIICDGVLYFLIYATGGG 252 (405)
Q Consensus 174 ~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~-~~~~~~~~~~~v~~~g~iy~l~~~~~~~ 252 (405)
...+...+ -+||++|+..... ....+++||..+++|+....+ .++..+..+..++++|++|++++..+
T Consensus 271 ~h~~~~~~-----~~iYv~GG~~~~~----~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g-- 339 (470)
T PLN02193 271 FHSMAADE-----ENVYVFGGVSATA----RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNG-- 339 (470)
T ss_pred ceEEEEEC-----CEEEEECCCCCCC----CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCC--
Confidence 11222222 2789988753211 134689999999999886532 12233455667788999999986432
Q ss_pred CCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEcccccccc------CccceEEEEEEeCceeE
Q 015502 253 APENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRP------DIIKGIGIWVLNGKEWQ 326 (405)
Q Consensus 253 ~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~------~~~~~~~vw~l~~~~W~ 326 (405)
.....+.+||+.+++|+.+.. ....|..+....++..+++||++++....... .....+.+|+++..+|+
T Consensus 340 --~~~~dv~~yD~~t~~W~~~~~--~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 340 --CEVDDVHYYDPVQDKWTQVET--FGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred --CccCceEEEECCCCEEEEecc--CCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 124679999999999986421 11335445555678889999999986421100 01223555555578999
Q ss_pred EEeccC
Q 015502 327 EVARMP 332 (405)
Q Consensus 327 ~v~~i~ 332 (405)
.+..++
T Consensus 416 ~~~~~~ 421 (470)
T PLN02193 416 RLDKFG 421 (470)
T ss_pred EcccCC
Confidence 987665
No 21
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.14 E-value=3e-09 Score=90.23 Aligned_cols=231 Identities=15% Similarity=0.202 Sum_probs=143.1
Q ss_pred eEEecCCCCeeeeccCC-----------CCCCC--CeEEEecCceEEEEeCCC-----CceEEEEeCcccceeeccC---
Q 015502 106 GYAYDPILRKWYGIELP-----------CIETS--NWFIASSYGLVCFMDNDS-----RSELYVCNPISKSWKKLEE--- 164 (405)
Q Consensus 106 ~~~~d~~~~~w~~~~~p-----------~~~~~--~~~~~s~~Gll~~~~~~~-----~~~~~v~NP~T~~~~~lP~--- 164 (405)
...++...-+|..++.- ..|.. -+.+..-.+-+++.++.+ .+.++-+||-|.+|...--
T Consensus 46 VH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~ 125 (392)
T KOG4693|consen 46 VHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGF 125 (392)
T ss_pred eEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeee
Confidence 34455556688877531 11111 123445566677766533 3578999999999987532
Q ss_pred CCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccc-cccccccCCCccEEECcEEE
Q 015502 165 PPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWK-EVLTGWRAGDESIICDGVLY 243 (405)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~-~~~~~~~~~~~~v~~~g~iy 243 (405)
.|..+ -.++++.++- ..+++|+.....+.. -..++++|..+-.|+.+.. ..|++++..+.++++++.+|
T Consensus 126 vPgaR-DGHsAcV~gn-------~MyiFGGye~~a~~F--S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MY 195 (392)
T KOG4693|consen 126 VPGAR-DGHSACVWGN-------QMYIFGGYEEDAQRF--SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMY 195 (392)
T ss_pred cCCcc-CCceeeEECc-------EEEEecChHHHHHhh--hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEE
Confidence 12222 2245555553 456666643221111 2468899999999999863 56788899999999999999
Q ss_pred eeEEecCC----CCC--CCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEE
Q 015502 244 FLIYATGG----GAP--ENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGI 317 (405)
Q Consensus 244 ~l~~~~~~----~~~--~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~v 317 (405)
++++..+. ... ..-..|+++|+.|+.|... +.....|..+-.....+.+|++|++++...... ...-++
T Consensus 196 iFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~--p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln---~HfndL 270 (392)
T KOG4693|consen 196 IFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRT--PENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLN---VHFNDL 270 (392)
T ss_pred EeccccccCCCccchhhhhcceeEEEeccccccccC--CCCCcCCCcccccceEEEcceEEEecccchhhh---hhhcce
Confidence 99976542 111 1124799999999999742 112233444444567899999999998753321 234567
Q ss_pred EEEeC--ceeEEEecc---ChhHHhccCCCCceeEEeeCCCEEEEEe
Q 015502 318 WVLNG--KEWQEVARM---PHKFFQGFGEFDDVFASSGTDDLIYIQS 359 (405)
Q Consensus 318 w~l~~--~~W~~v~~i---~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 359 (405)
|.++. ..|.++..- |.... -.+++..|+.||+-.
T Consensus 271 y~FdP~t~~W~~I~~~Gk~P~aRR--------RqC~~v~g~kv~LFG 309 (392)
T KOG4693|consen 271 YCFDPKTSMWSVISVRGKYPSARR--------RQCSVVSGGKVYLFG 309 (392)
T ss_pred eecccccchheeeeccCCCCCccc--------ceeEEEECCEEEEec
Confidence 77774 679987543 22211 123455677777753
No 22
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.07 E-value=2.7e-09 Score=84.66 Aligned_cols=109 Identities=24% Similarity=0.447 Sum_probs=76.2
Q ss_pred cEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccC----CccccCceEEeCCcEEEEEccccccccC
Q 015502 235 SIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVP----CALTCGRLMNLKEKLVMVGGIGKQDRPD 310 (405)
Q Consensus 235 ~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p----~~~~~~~l~~~~G~L~~v~~~~~~~~~~ 310 (405)
++++||.+||++... ......|++||+++|+|+ .++.| .......|++++|+|+++......
T Consensus 1 gicinGvly~~a~~~----~~~~~~IvsFDv~~E~f~------~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~---- 66 (129)
T PF08268_consen 1 GICINGVLYWLAWSE----DSDNNVIVSFDVRSEKFR------FIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQG---- 66 (129)
T ss_pred CEEECcEEEeEEEEC----CCCCcEEEEEEcCCceEE------EEEeeeeeccccCccEEEEeCCeEEEEEecCCC----
Confidence 478999999999762 234578999999999997 45665 223456799999999999764321
Q ss_pred ccceEEEEEEeC---ceeEEEec-cChhHHhcc-CCCCceeEEeeCCCEEEE
Q 015502 311 IIKGIGIWVLNG---KEWQEVAR-MPHKFFQGF-GEFDDVFASSGTDDLIYI 357 (405)
Q Consensus 311 ~~~~~~vw~l~~---~~W~~v~~-i~~~~~~~~-~~~~~~~~~~~~~~~i~~ 357 (405)
....+++|.|++ ++|++... +|....... +....++++...|++|++
T Consensus 67 ~~~~~~iWvLeD~~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 67 EPDSIDIWVLEDYEKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred CcceEEEEEeeccccceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 135699999995 68999866 554332211 112345666777888888
No 23
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.98 E-value=1.8e-08 Score=85.67 Aligned_cols=217 Identities=12% Similarity=0.129 Sum_probs=138.1
Q ss_pred ceEEEEeCcccceeeccCCCC------C----CCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCC
Q 015502 147 SELYVCNPISKSWKKLEEPPG------L----KFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTM 216 (405)
Q Consensus 147 ~~~~v~NP~T~~~~~lP~~~~------~----~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~ 216 (405)
-.+.++|..+-.|..+|+--. . ....+......++. ++++-|+.+..-+. -..++-||++++
T Consensus 44 iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d-----~~yvWGGRND~ega---CN~Ly~fDp~t~ 115 (392)
T KOG4693|consen 44 IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQD-----KAYVWGGRNDDEGA---CNLLYEFDPETN 115 (392)
T ss_pred ceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcc-----eEEEEcCccCcccc---cceeeeeccccc
Confidence 478999999999999987211 0 11122233344433 78887775432221 235778999999
Q ss_pred Ccccccc-cccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCC
Q 015502 217 MWVTSWK-EVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKE 295 (405)
Q Consensus 217 ~W~~~~~-~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G 295 (405)
.|...+. ...++.+.++++++.++.+|++++... +.......+.++|+.|.+|..+-+ ....|.-+.....++.+|
T Consensus 116 ~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~-~a~~FS~d~h~ld~~TmtWr~~~T--kg~PprwRDFH~a~~~~~ 192 (392)
T KOG4693|consen 116 VWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEE-DAQRFSQDTHVLDFATMTWREMHT--KGDPPRWRDFHTASVIDG 192 (392)
T ss_pred cccccceeeecCCccCCceeeEECcEEEEecChHH-HHHhhhccceeEeccceeeeehhc--cCCCchhhhhhhhhhccc
Confidence 9988652 345566788899999999999996642 233444679999999999986422 233344344455677889
Q ss_pred cEEEEEcccccccc------CccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC-------CC
Q 015502 296 KLVMVGGIGKQDRP------DIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY-------GA 362 (405)
Q Consensus 296 ~L~~v~~~~~~~~~------~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~ 362 (405)
..|++++....... .-..++...++..+.|..-..-+. .. -|..+. ...+.++.+|+-.. --
T Consensus 193 ~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~--~P-~GRRSH--S~fvYng~~Y~FGGYng~ln~Hf 267 (392)
T KOG4693|consen 193 MMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTM--KP-GGRRSH--STFVYNGKMYMFGGYNGTLNVHF 267 (392)
T ss_pred eEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCc--CC-Cccccc--ceEEEcceEEEecccchhhhhhh
Confidence 99999987433211 123568888888899987522111 10 000111 11234667776432 12
Q ss_pred CeEEEEECCCCcEEEcc
Q 015502 363 PSLLVYDMNLKQWRWSH 379 (405)
Q Consensus 363 ~~~~~Yd~~~~~w~~l~ 379 (405)
..+..||+++..|+.+.
T Consensus 268 ndLy~FdP~t~~W~~I~ 284 (392)
T KOG4693|consen 268 NDLYCFDPKTSMWSVIS 284 (392)
T ss_pred cceeecccccchheeee
Confidence 48999999999999986
No 24
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.94 E-value=9.3e-10 Score=70.25 Aligned_cols=42 Identities=33% Similarity=0.661 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChhhhh
Q 015502 42 DLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLW 83 (405)
Q Consensus 42 ~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~F~~ 83 (405)
|..||+|++.+||+.|+.+|+.+++.|||+|+.++.++.+.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 458999999999999999999999999999999998875443
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.90 E-value=4.3e-08 Score=88.31 Aligned_cols=219 Identities=15% Similarity=0.167 Sum_probs=137.9
Q ss_pred ceEEEEeCcccceeeccCC--CCCCCCccceeEEEEeCCCCcEEEEEEee-eccCCCcc-ccceEEEEEeCCCCCccccc
Q 015502 147 SELYVCNPISKSWKKLEEP--PGLKFSDYSALSLSVDRVSHRYTVSIVKS-KQVTGNFF-QWELSIHIYDSDTMMWVTSW 222 (405)
Q Consensus 147 ~~~~v~NP~T~~~~~lP~~--~~~~~~~~~~~~~~~~~~~~~ykv~~~~~-~~~~~~~~-~~~~~~~vy~s~~~~W~~~~ 222 (405)
+.+|+||-.+++|+.+-.+ |.++ ..+. +++.++. .++++|+ ...++... ......++|+..+++|..+.
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pR-sshq---~va~~s~---~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~ 170 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPR-SSHQ---AVAVPSN---ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLE 170 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCC-ccce---eEEeccC---eEEEeccccCCcchhhhhhhhheeeeeeccchheeec
Confidence 6789999999999987433 3223 2222 2222322 3455544 33333211 11345889999999999987
Q ss_pred ccccccccCCCccEEECcEEEeeEEecCC-CCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEe-CCcEEEE
Q 015502 223 KEVLTGWRAGDESIICDGVLYFLIYATGG-GAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNL-KEKLVMV 300 (405)
Q Consensus 223 ~~~~~~~~~~~~~v~~~g~iy~l~~~~~~-~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~-~G~L~~v 300 (405)
.+--++.+.+|+.|.....|+.+|+..+- ......+.+.+||+.+=+|+.+.+. ...|..+..+++.+. +|.|++.
T Consensus 171 ~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kleps--ga~PtpRSGcq~~vtpqg~i~vy 248 (521)
T KOG1230|consen 171 FGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPS--GAGPTPRSGCQFSVTPQGGIVVY 248 (521)
T ss_pred cCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCC--CCCCCCCCcceEEecCCCcEEEE
Confidence 54445667788889888899998866432 1222345799999999999987552 225666777777777 9999999
Q ss_pred Eccccccc----cCccceEEEEEEeC-------ceeEEEeccCh--hHHhccCCCCceeEEeeCCCEEEEEeC-------
Q 015502 301 GGIGKQDR----PDIIKGIGIWVLNG-------KEWQEVARMPH--KFFQGFGEFDDVFASSGTDDLIYIQSY------- 360 (405)
Q Consensus 301 ~~~~~~~~----~~~~~~~~vw~l~~-------~~W~~v~~i~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~------- 360 (405)
+++..... ...+.+-++|.|+. ..|+++-.... .-..+| .+++...+..++|-.-
T Consensus 249 GGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgf-----sv~va~n~kal~FGGV~D~eeee 323 (521)
T KOG1230|consen 249 GGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGF-----SVAVAKNHKALFFGGVCDLEEEE 323 (521)
T ss_pred cchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCce-----eEEEecCCceEEecceecccccc
Confidence 98743321 12356788999983 36888755432 111111 1233334455555220
Q ss_pred ------CCCeEEEEECCCCcEEEcc
Q 015502 361 ------GAPSLLVYDMNLKQWRWSH 379 (405)
Q Consensus 361 ------~~~~~~~Yd~~~~~w~~l~ 379 (405)
--..++.||+..++|....
T Consensus 324 Esl~g~F~NDLy~fdlt~nrW~~~q 348 (521)
T KOG1230|consen 324 ESLSGEFFNDLYFFDLTRNRWSEGQ 348 (521)
T ss_pred hhhhhhhhhhhhheecccchhhHhh
Confidence 0137899999999998863
No 26
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=98.87 E-value=2.1e-07 Score=90.48 Aligned_cols=213 Identities=16% Similarity=0.164 Sum_probs=135.9
Q ss_pred eEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccc-ccc
Q 015502 148 ELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWK-EVL 226 (405)
Q Consensus 148 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~-~~~ 226 (405)
+++++|--+..|.....-...............+ -+++++|+.... ......+++||..++.|+.... ..+
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~-----~~l~lfGG~~~~---~~~~~~l~~~d~~t~~W~~l~~~~~~ 160 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG-----DKLYLFGGTDKK---YRNLNELHSLDLSTRTWSLLSPTGDP 160 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEEC-----CeEEEEccccCC---CCChhheEeccCCCCcEEEecCcCCC
Confidence 5999999999998876532111111222222222 178888875421 1124589999999999988753 223
Q ss_pred ccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccc
Q 015502 227 TGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQ 306 (405)
Q Consensus 227 ~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~ 306 (405)
+..+..+.++.++.++|+.|+.... ......+.+||+++.+|.++... .+.|..+....+++.+++++++++....
T Consensus 161 P~~r~~Hs~~~~g~~l~vfGG~~~~--~~~~ndl~i~d~~~~~W~~~~~~--g~~P~pR~gH~~~~~~~~~~v~gG~~~~ 236 (482)
T KOG0379|consen 161 PPPRAGHSATVVGTKLVVFGGIGGT--GDSLNDLHIYDLETSTWSELDTQ--GEAPSPRYGHAMVVVGNKLLVFGGGDDG 236 (482)
T ss_pred CCCcccceEEEECCEEEEECCccCc--ccceeeeeeeccccccceecccC--CCCCCCCCCceEEEECCeEEEEeccccC
Confidence 4456678889999999999865421 22457899999999999976433 3455556667788999999999886522
Q ss_pred cccCccceEEEEEEeCceeEEEecc---ChhHHhccCCCCceeEEeeCCCEEEEEeC-------CCCeEEEEECCCCcEE
Q 015502 307 DRPDIIKGIGIWVLNGKEWQEVARM---PHKFFQGFGEFDDVFASSGTDDLIYIQSY-------GAPSLLVYDMNLKQWR 376 (405)
Q Consensus 307 ~~~~~~~~~~vw~l~~~~W~~v~~i---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~Yd~~~~~w~ 376 (405)
. .....+.+.+|...+|.++... |.... .......++.+++... ....++.||++++.|.
T Consensus 237 ~--~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~--------~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~ 306 (482)
T KOG0379|consen 237 D--VYLNDVHILDLSTWEWKLLPTGGDLPSPRS--------GHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWS 306 (482)
T ss_pred C--ceecceEeeecccceeeeccccCCCCCCcc--------eeeeEEECCEEEEEcCCccccccccccccccccccccee
Confidence 1 1233344444446788865432 22111 0111235666666532 2457889999999999
Q ss_pred EccCCC
Q 015502 377 WSHKCP 382 (405)
Q Consensus 377 ~l~~~p 382 (405)
++....
T Consensus 307 ~~~~~~ 312 (482)
T KOG0379|consen 307 KVESVG 312 (482)
T ss_pred eeeccc
Confidence 998665
No 27
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=98.77 E-value=7.2e-07 Score=86.76 Aligned_cols=212 Identities=14% Similarity=0.118 Sum_probs=136.0
Q ss_pred eEEecCCCCeeeeccCC---CCCCCCeEEEecCceEEEEeCCC-----CceEEEEeCcccceeeccCCCCCCCCccceeE
Q 015502 106 GYAYDPILRKWYGIELP---CIETSNWFIASSYGLVCFMDNDS-----RSELYVCNPISKSWKKLEEPPGLKFSDYSALS 177 (405)
Q Consensus 106 ~~~~d~~~~~w~~~~~p---~~~~~~~~~~s~~Gll~~~~~~~-----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~ 177 (405)
.+.+|..+..|.....- +.+...+.+.+.+..|++.++.. ..++..+|+.|++|..+..............+
T Consensus 90 l~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~ 169 (482)
T KOG0379|consen 90 LYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSA 169 (482)
T ss_pred eEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceE
Confidence 56778887777654321 12333444555556666665532 14799999999999998754331111122223
Q ss_pred EEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccc-cccccccCCCccEEECcEEEeeEEecCCCCCCC
Q 015502 178 LSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWK-EVLTGWRAGDESIICDGVLYFLIYATGGGAPEN 256 (405)
Q Consensus 178 ~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~-~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~ 256 (405)
..++. +|+++|+.....+ ....+++||..+.+|..... ...+..+.++..+.++++++++++.. .....
T Consensus 170 ~~~g~-----~l~vfGG~~~~~~---~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~--~~~~~ 239 (482)
T KOG0379|consen 170 TVVGT-----KLVVFGGIGGTGD---SLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGD--DGDVY 239 (482)
T ss_pred EEECC-----EEEEECCccCccc---ceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccc--cCCce
Confidence 33322 7888887654332 35689999999999988763 22334577888899999999998643 12334
Q ss_pred ccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEe--CceeEEEeccC
Q 015502 257 RHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLN--GKEWQEVARMP 332 (405)
Q Consensus 257 ~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~--~~~W~~v~~i~ 332 (405)
...+..+|+.+.+|... ......|..+....++..+.+++++++...+ . ...--++|.|+ +..|..+..+.
T Consensus 240 l~D~~~ldl~~~~W~~~--~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~--~-~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 240 LNDVHILDLSTWEWKLL--PTGGDLPSPRSGHSLTVSGDHLLLFGGGTDP--K-QEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred ecceEeeecccceeeec--cccCCCCCCcceeeeEEECCEEEEEcCCccc--c-cccccccccccccccceeeeeccc
Confidence 56799999999999733 2234556666666677788899999886432 0 00234555555 57899987766
No 28
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.74 E-value=1e-08 Score=63.42 Aligned_cols=39 Identities=41% Similarity=0.830 Sum_probs=36.5
Q ss_pred CCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChhhhh
Q 015502 45 LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLW 83 (405)
Q Consensus 45 LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~F~~ 83 (405)
||+|++.+|+.+|+..++.+++.|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999987653
No 29
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.68 E-value=1.9e-08 Score=64.55 Aligned_cols=43 Identities=35% Similarity=0.660 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChhhhhhh
Q 015502 43 LILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNF 85 (405)
Q Consensus 43 ~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~F~~~~ 85 (405)
..||+|++.+||.+|+++++.+++.|||+|++++.++.+...+
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 4799999999999999999999999999999999998876543
No 30
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.66 E-value=8.9e-07 Score=73.34 Aligned_cols=131 Identities=13% Similarity=0.209 Sum_probs=77.6
Q ss_pred cEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccc----cCce-EEeCCcEEEEEcccccccc
Q 015502 235 SIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALT----CGRL-MNLKEKLVMVGGIGKQDRP 309 (405)
Q Consensus 235 ~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~----~~~l-~~~~G~L~~v~~~~~~~~~ 309 (405)
+|++||.+||++..... .....|++||+.+|+++. .+++|.... ...| ++.+|+|+++....
T Consensus 1 gV~vnG~~hW~~~~~~~---~~~~~IlsFDl~~E~F~~-----~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~----- 67 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENN---DEKDFILSFDLSTEKFGR-----SLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCD----- 67 (164)
T ss_pred CEEECCEEEeeEEecCC---CCceEEEEEeccccccCC-----EECCCCccCccCCEEEEEEecCCEEEEEEecc-----
Confidence 48899999999976421 111279999999999842 466676544 2335 34477999986421
Q ss_pred CccceEEEEEEeC-----ceeEEEeccChhHHhccCCC-CceeEEeeCCCEEEEE-eCC--C---CeEEEEECCCCcEEE
Q 015502 310 DIIKGIGIWVLNG-----KEWQEVARMPHKFFQGFGEF-DDVFASSGTDDLIYIQ-SYG--A---PSLLVYDMNLKQWRW 377 (405)
Q Consensus 310 ~~~~~~~vw~l~~-----~~W~~v~~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~-~~~--~---~~~~~Yd~~~~~w~~ 377 (405)
....++||.+++ .+|++..+++......+... ...-.+...++.+.+. ... . ..+++|+ +++..++
T Consensus 68 -~~~~~~IWvm~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~ 145 (164)
T PF07734_consen 68 -ETSKIEIWVMKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIE 145 (164)
T ss_pred -CCccEEEEEEeeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEE
Confidence 134599999993 58999988874222211000 0011112233333333 211 1 4677887 7777777
Q ss_pred ccC
Q 015502 378 SHK 380 (405)
Q Consensus 378 l~~ 380 (405)
+..
T Consensus 146 ~~~ 148 (164)
T PF07734_consen 146 VDI 148 (164)
T ss_pred ccc
Confidence 753
No 31
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.60 E-value=4.9e-06 Score=75.34 Aligned_cols=150 Identities=15% Similarity=0.221 Sum_probs=98.1
Q ss_pred eEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE-CcEEEeeEEecCC-CC
Q 015502 176 LSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC-DGVLYFLIYATGG-GA 253 (405)
Q Consensus 176 ~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~-~g~iy~l~~~~~~-~~ 253 (405)
+.|.+.|.-. .++.+|+.-..+.-..-...++.|+.+++.|+....|..+..+..+.+|++ .|.+|..|+.-.- ..
T Consensus 70 ~sl~~nPeke--ELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq 147 (521)
T KOG1230|consen 70 PSLFANPEKE--ELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQ 147 (521)
T ss_pred cceeeccCcc--eeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcch
Confidence 3455555433 455555433332211113457899999999999876555555666777766 5888887753210 00
Q ss_pred C--CCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccC-ccceEEEEEEeCceeEEEec
Q 015502 254 P--ENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPD-IIKGIGIWVLNGKEWQEVAR 330 (405)
Q Consensus 254 ~--~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~-~~~~~~vw~l~~~~W~~v~~ 330 (405)
. .....+..||+.+.+|+++. ..-.|..+....++++..+|.+++++....+.. ....+.+|.|+...|.++..
T Consensus 148 ~qF~HYkD~W~fd~~trkweql~---~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep 224 (521)
T KOG1230|consen 148 EQFHHYKDLWLFDLKTRKWEQLE---FGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP 224 (521)
T ss_pred hhhhhhhheeeeeeccchheeec---cCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence 1 11236899999999999752 334567777888999999999999975443321 24557888888999999865
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.06 E-value=0.00054 Score=60.93 Aligned_cols=38 Identities=34% Similarity=0.686 Sum_probs=35.8
Q ss_pred CCCC----HHHHHHHHhcCChhhhHHHhhcchhhHhhhcChh
Q 015502 43 LILP----DDLLERILAYLPIASIFRAGCVCRRWHEIVSSRR 80 (405)
Q Consensus 43 ~~LP----~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~ 80 (405)
..|| +++.+.||+.|...+|..+..|||+|+.+++++.
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~ 117 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGM 117 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccch
Confidence 3689 9999999999999999999999999999999885
No 33
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.98 E-value=0.00061 Score=63.78 Aligned_cols=121 Identities=12% Similarity=0.186 Sum_probs=75.1
Q ss_pred cCCCccEEE------CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEcc
Q 015502 230 RAGDESIIC------DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGI 303 (405)
Q Consensus 230 ~~~~~~v~~------~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~ 303 (405)
+..+.+|.. ..++|+.++-.|. ....+..+|+++..|++....-+.++|.. -......++|+|+.+++
T Consensus 200 RESHTAViY~eKDs~~skmvvyGGM~G~----RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRS--LHsa~~IGnKMyvfGGW 273 (830)
T KOG4152|consen 200 RESHTAVIYTEKDSKKSKMVVYGGMSGC----RLGDLWTLDLDTLTWNKPSLSGVAPLPRS--LHSATTIGNKMYVFGGW 273 (830)
T ss_pred cccceeEEEEeccCCcceEEEEcccccc----cccceeEEecceeecccccccCCCCCCcc--cccceeecceeEEecce
Confidence 445566655 3478888754432 23578999999999997655445566653 33456788999999987
Q ss_pred ccc----------cccC-ccceEEEEEEeCceeEEEec--cChh-HHhccCCCCceeEEeeCCCEEEEEeC
Q 015502 304 GKQ----------DRPD-IIKGIGIWVLNGKEWQEVAR--MPHK-FFQGFGEFDDVFASSGTDDLIYIQSY 360 (405)
Q Consensus 304 ~~~----------~~~~-~~~~~~vw~l~~~~W~~v~~--i~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~ 360 (405)
... +.++ .+..+..|.|++.+|+.+.. ..+. +-+. ...-+..+.|..+||.+.
T Consensus 274 VPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~----RAGHCAvAigtRlYiWSG 340 (830)
T KOG4152|consen 274 VPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRA----RAGHCAVAIGTRLYIWSG 340 (830)
T ss_pred eeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccc----cccceeEEeccEEEEEec
Confidence 322 1111 25779999999999998642 2111 1010 011133556888888753
No 34
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=0.0012 Score=59.25 Aligned_cols=173 Identities=17% Similarity=0.194 Sum_probs=102.6
Q ss_pred ceEEEEeCc--ccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCC-ccccceEEEEEeCCCCCcccccc
Q 015502 147 SELYVCNPI--SKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGN-FFQWELSIHIYDSDTMMWVTSWK 223 (405)
Q Consensus 147 ~~~~v~NP~--T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~-~~~~~~~~~vy~s~~~~W~~~~~ 223 (405)
..+|+.|.- .+.|+.+...|...+....+++++- +++++++...... ..+-...++.|++.+++|.....
T Consensus 58 ~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~-------kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t 130 (381)
T COG3055 58 TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGG-------KLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT 130 (381)
T ss_pred ccceehhhhcCCCCceEcccCCCcccccchheeeCC-------eEEEeeccccCCCCCceEeeeeEEecCCCChhheecc
Confidence 445555544 4689999887755443333333322 7888776432221 12223568899999999998875
Q ss_pred cccccccCCCccEEECc-EEEeeEEecCC--C-----------------------------CCCCccEEEEEECCCCcch
Q 015502 224 EVLTGWRAGDESIICDG-VLYFLIYATGG--G-----------------------------APENRHGLISFNLSSRSSH 271 (405)
Q Consensus 224 ~~~~~~~~~~~~v~~~g-~iy~l~~~~~~--~-----------------------------~~~~~~~i~~fD~~~~~w~ 271 (405)
..|.. ...+..+.+++ .+|+.++.... + +......+++||+.+++|+
T Consensus 131 ~sP~g-l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~ 209 (381)
T COG3055 131 RSPTG-LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWR 209 (381)
T ss_pred ccccc-cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhh
Confidence 44444 34455566666 89998753210 0 0111235899999999998
Q ss_pred hhhcccccccCCccccCceEEe-CCcEEEEEccccccccCccceEEEEEEe--CceeEEEeccChh
Q 015502 272 ALLIKSFIPVPCALTCGRLMNL-KEKLVMVGGIGKQDRPDIIKGIGIWVLN--GKEWQEVARMPHK 334 (405)
Q Consensus 272 ~~~~~~~~~~p~~~~~~~l~~~-~G~L~~v~~~~~~~~~~~~~~~~vw~l~--~~~W~~v~~i~~~ 334 (405)
. .-..|....++..++. +++|.+|.+.-.+-- .+..+....+. ..+|.+...+|..
T Consensus 210 ~-----~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGL--Rt~~~k~~~~~~~~~~w~~l~~lp~~ 268 (381)
T COG3055 210 N-----LGENPFYGNAGSAVVIKGNKLTLINGEIKPGL--RTAEVKQADFGGDNLKWLKLSDLPAP 268 (381)
T ss_pred h-----cCcCcccCccCcceeecCCeEEEEcceecCCc--cccceeEEEeccCceeeeeccCCCCC
Confidence 4 2445654445544554 456999987533311 13333444443 4689999887753
No 35
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.014 Score=52.76 Aligned_cols=219 Identities=15% Similarity=0.175 Sum_probs=121.5
Q ss_pred eEEecCC--CCeeeecc-CCCCCCCCeEEEecCceEEEEeCCC---------CceEEEEeCcccceeeccCCCCCCCCcc
Q 015502 106 GYAYDPI--LRKWYGIE-LPCIETSNWFIASSYGLVCFMDNDS---------RSELYVCNPISKSWKKLEEPPGLKFSDY 173 (405)
Q Consensus 106 ~~~~d~~--~~~w~~~~-~p~~~~~~~~~~s~~Gll~~~~~~~---------~~~~~v~NP~T~~~~~lP~~~~~~~~~~ 173 (405)
.+..|.. ...|.... .|..++.-.+.+.++|-|+.-++.. .+.+|.+||.+++|..|.... +.. ..
T Consensus 60 fy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s-P~g-l~ 137 (381)
T COG3055 60 FYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS-PTG-LV 137 (381)
T ss_pred ceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc-ccc-cc
Confidence 3444543 34677764 4555555566777888888765421 146899999999999997531 111 11
Q ss_pred ceeEEEEeCCCCcEEEEEEeeec------------------------------cCCCccccceEEEEEeCCCCCcccccc
Q 015502 174 SALSLSVDRVSHRYTVSIVKSKQ------------------------------VTGNFFQWELSIHIYDSDTMMWVTSWK 223 (405)
Q Consensus 174 ~~~~~~~~~~~~~ykv~~~~~~~------------------------------~~~~~~~~~~~~~vy~s~~~~W~~~~~ 223 (405)
.+.....++ -+|++.++.. .......+...+.+|++.++.|+....
T Consensus 138 G~~~~~~~~----~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~ 213 (381)
T COG3055 138 GASTFSLNG----TKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE 213 (381)
T ss_pred cceeEecCC----ceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc
Confidence 222333222 2566665432 011122234568899999999999752
Q ss_pred cccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccc-----cCceEEeCCcEE
Q 015502 224 EVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALT-----CGRLMNLKEKLV 298 (405)
Q Consensus 224 ~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~-----~~~l~~~~G~L~ 298 (405)
.+....+....+.-++++-.+.+.-............-|.-...+|..+- -.+.|.... ...-...+|.+.
T Consensus 214 -~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~~l 289 (381)
T COG3055 214 -NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGEVL 289 (381)
T ss_pred -CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc---CCCCCCCCCccccceeccceeCCeEE
Confidence 22222333333333666777765432223333445666666788887531 122222111 112234667777
Q ss_pred EEEccccc--------------cccCccceEEEEEEeCceeEEEeccChh
Q 015502 299 MVGGIGKQ--------------DRPDIIKGIGIWVLNGKEWQEVARMPHK 334 (405)
Q Consensus 299 ~v~~~~~~--------------~~~~~~~~~~vw~l~~~~W~~v~~i~~~ 334 (405)
+.++-..+ .+..-.-+=+||.++++.|..+..||..
T Consensus 290 v~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeLp~~ 339 (381)
T COG3055 290 VAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGELPQG 339 (381)
T ss_pred EecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecccCCC
Confidence 77654221 1001122468899999999999999973
No 36
>PF13964 Kelch_6: Kelch motif
Probab=97.46 E-value=0.0004 Score=44.62 Aligned_cols=40 Identities=13% Similarity=0.250 Sum_probs=31.8
Q ss_pred eEEEecCceEEEEeCCCC-----ceEEEEeCcccceeeccCCCCC
Q 015502 129 WFIASSYGLVCFMDNDSR-----SELYVCNPISKSWKKLEEPPGL 168 (405)
Q Consensus 129 ~~~~s~~Gll~~~~~~~~-----~~~~v~NP~T~~~~~lP~~~~~ 168 (405)
+-+++.+|-|++.++... +.++++||.|++|..+|+||.+
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence 345667788888776433 6899999999999999999854
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.26 E-value=0.00074 Score=42.69 Aligned_cols=44 Identities=16% Similarity=0.403 Sum_probs=35.9
Q ss_pred cCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccC
Q 015502 287 CGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMP 332 (405)
Q Consensus 287 ~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~ 332 (405)
...++..+++||+++|.... ......+++|+++++.|+++..||
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~--~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGN--NQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp SEEEEEETTEEEEEEEBEST--SSBEEEEEEEETTTTEEEEEEEES
T ss_pred cCEEEEECCEEEEEeeeccc--CceeeeEEEEeCCCCEEEEcCCCC
Confidence 34578899999999997652 335788999999999999999886
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00028 Score=62.06 Aligned_cols=39 Identities=26% Similarity=0.446 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChh
Q 015502 42 DLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRR 80 (405)
Q Consensus 42 ~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~ 80 (405)
|-.||||+++.||+.|+.++|.++..|||+|+.+.++..
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 779999999999999999999999999999999988765
No 39
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=97.17 E-value=0.17 Score=50.08 Aligned_cols=42 Identities=24% Similarity=0.548 Sum_probs=37.6
Q ss_pred cCCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChhhh
Q 015502 41 VDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFL 82 (405)
Q Consensus 41 ~~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~F~ 82 (405)
....||.++...||..|+.++++.++.||+.|+.++.+....
T Consensus 107 fi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~ 148 (537)
T KOG0274|consen 107 FLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVW 148 (537)
T ss_pred hhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchh
Confidence 345799999999999999999999999999999999876544
No 40
>PF13964 Kelch_6: Kelch motif
Probab=97.03 E-value=0.0013 Score=42.20 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=35.9
Q ss_pred cCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccCh
Q 015502 287 CGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPH 333 (405)
Q Consensus 287 ~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~ 333 (405)
...++..+|+||+++|.... ......+.+|++++++|+++..||.
T Consensus 4 ~~s~v~~~~~iyv~GG~~~~--~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDNS--GKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred cCEEEEECCEEEEECCCCCC--CCccccEEEEcCCCCcEEECCCCCC
Confidence 44678999999999997542 2246778999999999999998874
No 41
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=96.88 E-value=0.0019 Score=40.73 Aligned_cols=40 Identities=8% Similarity=0.238 Sum_probs=32.0
Q ss_pred CCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchh
Q 015502 231 AGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHA 272 (405)
Q Consensus 231 ~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~ 272 (405)
..+..+.++++||++|+..+ .......+..||+.+++|..
T Consensus 3 ~~~~~~~~~~~iyv~GG~~~--~~~~~~~v~~yd~~~~~W~~ 42 (47)
T PF01344_consen 3 SGHAAVVVGNKIYVIGGYDG--NNQPTNSVEVYDPETNTWEE 42 (47)
T ss_dssp BSEEEEEETTEEEEEEEBES--TSSBEEEEEEEETTTTEEEE
T ss_pred ccCEEEEECCEEEEEeeecc--cCceeeeEEEEeCCCCEEEE
Confidence 34567889999999998753 24556789999999999984
No 42
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.78 E-value=0.0011 Score=58.50 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=51.5
Q ss_pred cceeeecchhhhcccccccccccCCcCCCcc-ccccccCCCCCHHHHHHHHhcCC-----hhhhHHHhhcchhhHhhhcC
Q 015502 5 TSWINHCIDDMARGINEFDSFLELSDEGNKE-ASTLSVDLILPDDLLERILAYLP-----IASIFRAGCVCRRWHEIVSS 78 (405)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LP~dll~~Il~~Lp-----~~~l~r~r~VcK~W~~~i~~ 78 (405)
.+|.++-.|+..++..-+-..+....+-.-. .++....+.||+|+|.+||.++= ..+|.++.+|||.|+..+++
T Consensus 69 ~~~l~l~~D~~~~~~~~s~f~~tLt~qe~v~~qp~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~ 148 (366)
T KOG2997|consen 69 NSYLELNDDASKMADLLSYFQQTLTFQESVLCQPELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARD 148 (366)
T ss_pred cchhhccccchhhcCchhccccccccccccccchhhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcC
Confidence 4677777776655554111111111111111 12211224799999999998763 59999999999999999999
Q ss_pred hhhhhhh
Q 015502 79 RRFLWNF 85 (405)
Q Consensus 79 ~~F~~~~ 85 (405)
|.|.+..
T Consensus 149 ~~lwR~a 155 (366)
T KOG2997|consen 149 PELWRLA 155 (366)
T ss_pred hHHHHHH
Confidence 9876554
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=96.75 E-value=0.0037 Score=39.87 Aligned_cols=45 Identities=18% Similarity=0.378 Sum_probs=31.4
Q ss_pred CceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccC
Q 015502 288 GRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMP 332 (405)
Q Consensus 288 ~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~ 332 (405)
...++.+++||++++............+.+|++++.+|+++..+|
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 346789999999999721222223455777777789999988764
No 44
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=96.55 E-value=0.0052 Score=39.18 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=32.0
Q ss_pred CCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchh
Q 015502 231 AGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHA 272 (405)
Q Consensus 231 ~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~ 272 (405)
..+.+++++++||++++............+..||+++.+|+.
T Consensus 3 ~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~ 44 (49)
T PF07646_consen 3 YGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTE 44 (49)
T ss_pred cceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEee
Confidence 456788999999999976111234455789999999999984
No 45
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.45 E-value=0.023 Score=53.57 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=89.4
Q ss_pred EeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccc-cccccccCCCccEEECcEEEeeEEecCC--C----
Q 015502 180 VDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWK-EVLTGWRAGDESIICDGVLYFLIYATGG--G---- 252 (405)
Q Consensus 180 ~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~-~~~~~~~~~~~~v~~~g~iy~l~~~~~~--~---- 252 (405)
+..+++.-|+++.|++.... .-.++..|.++-.|..... ...+-.+..+.++.+++++|++++-... .
T Consensus 209 ~eKDs~~skmvvyGGM~G~R-----LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~ 283 (830)
T KOG4152|consen 209 TEKDSKKSKMVVYGGMSGCR-----LGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKV 283 (830)
T ss_pred EeccCCcceEEEEccccccc-----ccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeecccccc
Confidence 34556677889988764221 2256778899999988753 2223335567889999999999853211 0
Q ss_pred ---CCCC--ccEEEEEECCCCcchhhhcccc--cccCCccccCceEEeCCcEEEEEccccccc--cCccceEEEEEEeC
Q 015502 253 ---APEN--RHGLISFNLSSRSSHALLIKSF--IPVPCALTCGRLMNLKEKLVMVGGIGKQDR--PDIIKGIGIWVLNG 322 (405)
Q Consensus 253 ---~~~~--~~~i~~fD~~~~~w~~~~~~~~--~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~--~~~~~~~~vw~l~~ 322 (405)
..+. ...+-++|+.+..|..+..... -..|..+.....+..+.+||+-++.++... .....+-++|-||.
T Consensus 284 ~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT 362 (830)
T KOG4152|consen 284 ATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT 362 (830)
T ss_pred ccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence 1111 2358999999999986533221 123555556678889999999988755432 22356678888884
No 46
>smart00612 Kelch Kelch domain.
Probab=95.34 E-value=0.036 Score=34.49 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=28.9
Q ss_pred EEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECc
Q 015502 188 TVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDG 240 (405)
Q Consensus 188 kv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g 240 (405)
+|+++|+... . .....+++||+++++|+... + ++..+..+..+.++|
T Consensus 1 ~iyv~GG~~~--~--~~~~~v~~yd~~~~~W~~~~-~-~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG--G--QRLKSVEVYDPETNKWTPLP-S-MPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCC--C--ceeeeEEEECCCCCeEccCC-C-CCCccccceEEEeCC
Confidence 3677777531 1 11457899999999999864 3 333344444555543
No 47
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.33 E-value=0.68 Score=40.89 Aligned_cols=166 Identities=14% Similarity=0.149 Sum_probs=89.7
Q ss_pred ceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCc
Q 015502 205 ELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCA 284 (405)
Q Consensus 205 ~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~ 284 (405)
...+..|+..+++=... .+++.. ..+...+.+++++|-|.... ...+.||..+-+ . .-..+..
T Consensus 67 ~S~l~~~d~~tg~~~~~-~~l~~~-~FgEGit~~~d~l~qLTWk~--------~~~f~yd~~tl~--~-----~~~~~y~ 129 (264)
T PF05096_consen 67 QSSLRKVDLETGKVLQS-VPLPPR-YFGEGITILGDKLYQLTWKE--------GTGFVYDPNTLK--K-----IGTFPYP 129 (264)
T ss_dssp EEEEEEEETTTSSEEEE-EE-TTT---EEEEEEETTEEEEEESSS--------SEEEEEETTTTE--E-----EEEEE-S
T ss_pred cEEEEEEECCCCcEEEE-EECCcc-ccceeEEEECCEEEEEEecC--------CeEEEEccccce--E-----EEEEecC
Confidence 45889999988864332 233322 23345677899999999754 479999998654 1 1222333
Q ss_pred cccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCe
Q 015502 285 LTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPS 364 (405)
Q Consensus 285 ~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 364 (405)
.....|..-+..|++-.+. . .++.++....+.+.++.-.. .+.. -..+--.--.++.||.+--....
T Consensus 130 ~EGWGLt~dg~~Li~SDGS---------~--~L~~~dP~~f~~~~~i~V~~-~g~p-v~~LNELE~i~G~IyANVW~td~ 196 (264)
T PF05096_consen 130 GEGWGLTSDGKRLIMSDGS---------S--RLYFLDPETFKEVRTIQVTD-NGRP-VSNLNELEYINGKIYANVWQTDR 196 (264)
T ss_dssp SS--EEEECSSCEEEE-SS---------S--EEEEE-TTT-SEEEEEE-EE-TTEE----EEEEEEETTEEEEEETTSSE
T ss_pred CcceEEEcCCCEEEEECCc---------c--ceEEECCcccceEEEEEEEE-CCEE-CCCcEeEEEEcCEEEEEeCCCCe
Confidence 3556677666677776652 2 34455554444444432100 0000 00000111237789987766789
Q ss_pred EEEEECCCCcEEEccCCC-------CC--CCCcccceeeeeecee
Q 015502 365 LLVYDMNLKQWRWSHKCP-------VT--KRFPLQLFTGFCFEPR 400 (405)
Q Consensus 365 ~~~Yd~~~~~w~~l~~~p-------~~--~~~~~~~~~~~~~~p~ 400 (405)
++..|+++++....-++- .. .....+.++|+||.|.
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~ 241 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE 241 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence 999999999887742211 00 1112678999999875
No 48
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=95.04 E-value=0.054 Score=34.34 Aligned_cols=32 Identities=22% Similarity=0.464 Sum_probs=18.5
Q ss_pred CCEEEEEeC------CCCeEEEEECCCCcEEEccCCCC
Q 015502 352 DDLIYIQSY------GAPSLLVYDMNLKQWRWSHKCPV 383 (405)
Q Consensus 352 ~~~i~~~~~------~~~~~~~Yd~~~~~w~~l~~~p~ 383 (405)
++.||+... ....+.+||+++++|++++++|.
T Consensus 12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 12 DNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 456666432 13489999999999999987773
No 49
>smart00612 Kelch Kelch domain.
Probab=94.95 E-value=0.071 Score=33.09 Aligned_cols=46 Identities=4% Similarity=0.059 Sum_probs=29.1
Q ss_pred EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeC
Q 015502 241 VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLK 294 (405)
Q Consensus 241 ~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~ 294 (405)
+||++++.. .......+.+||+.+++|+. ..++|..+....++..+
T Consensus 1 ~iyv~GG~~---~~~~~~~v~~yd~~~~~W~~-----~~~~~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFD---GGQRLKSVEVYDPETNKWTP-----LPSMPTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCC---CCceeeeEEEECCCCCeEcc-----CCCCCCccccceEEEeC
Confidence 378887543 12334679999999999984 34556554444444444
No 50
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.91 E-value=0.73 Score=43.00 Aligned_cols=128 Identities=13% Similarity=0.202 Sum_probs=74.3
Q ss_pred ECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCc---cccCceEEeCCcEEEEEccccccccCc--c
Q 015502 238 CDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCA---LTCGRLMNLKEKLVMVGGIGKQDRPDI--I 312 (405)
Q Consensus 238 ~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~---~~~~~l~~~~G~L~~v~~~~~~~~~~~--~ 312 (405)
.+.+|..+... ...+.||.++..- ..+|.- ....-.+..+|+||++........... .
T Consensus 75 ~gskIv~~d~~---------~~t~vyDt~t~av--------~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~ 137 (342)
T PF07893_consen 75 HGSKIVAVDQS---------GRTLVYDTDTRAV--------ATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDF 137 (342)
T ss_pred cCCeEEEEcCC---------CCeEEEECCCCeE--------eccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccc
Confidence 36777777532 3699999999883 233432 122334566889999987633211100 0
Q ss_pred ceEEEEEEe--------C--ceeEEEeccChhHHhccCCCC--cee--EEeeCCCEEEEEeCC-CCeEEEEECCCCcEEE
Q 015502 313 KGIGIWVLN--------G--KEWQEVARMPHKFFQGFGEFD--DVF--ASSGTDDLIYIQSYG-APSLLVYDMNLKQWRW 377 (405)
Q Consensus 313 ~~~~vw~l~--------~--~~W~~v~~i~~~~~~~~~~~~--~~~--~~~~~~~~i~~~~~~-~~~~~~Yd~~~~~w~~ 377 (405)
..+++.... . ..|..+..-| +....... .+. ++. +|..||+.... ....++||.++.+|++
T Consensus 138 ~~FE~l~~~~~~~~~~~~~~w~W~~LP~PP---f~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~ 213 (342)
T PF07893_consen 138 PCFEALVYRPPPDDPSPEESWSWRSLPPPP---FVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRK 213 (342)
T ss_pred eeEEEeccccccccccCCCcceEEcCCCCC---ccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceee
Confidence 156666433 1 2676654422 22111000 033 344 68999996532 2379999999999999
Q ss_pred ccC--CCCCCC
Q 015502 378 SHK--CPVTKR 386 (405)
Q Consensus 378 l~~--~p~~~~ 386 (405)
+.. +|..+.
T Consensus 214 ~GdW~LPF~G~ 224 (342)
T PF07893_consen 214 HGDWMLPFHGQ 224 (342)
T ss_pred ccceecCcCCc
Confidence 975 665543
No 51
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.80 E-value=2.5 Score=36.78 Aligned_cols=186 Identities=16% Similarity=0.232 Sum_probs=98.9
Q ss_pred cCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeC
Q 015502 134 SYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDS 213 (405)
Q Consensus 134 ~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s 213 (405)
.+|.++.... ...++.+|+.|++..---.++..... .....+. +|++... ...+..+|.
T Consensus 35 ~~~~v~~~~~--~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~-----~v~v~~~----------~~~l~~~d~ 93 (238)
T PF13360_consen 35 DGGRVYVASG--DGNLYALDAKTGKVLWRFDLPGPISG----APVVDGG-----RVYVGTS----------DGSLYALDA 93 (238)
T ss_dssp ETTEEEEEET--TSEEEEEETTTSEEEEEEECSSCGGS----GEEEETT-----EEEEEET----------TSEEEEEET
T ss_pred eCCEEEEEcC--CCEEEEEECCCCCEEEEeeccccccc----eeeeccc-----ccccccc----------eeeeEeccc
Confidence 6788887643 58899999999875432222211101 1121111 4444431 116677774
Q ss_pred --CCCCccc-ccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--chhhhcccccccCCccc--
Q 015502 214 --DTMMWVT-SWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SHALLIKSFIPVPCALT-- 286 (405)
Q Consensus 214 --~~~~W~~-~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~~~-- 286 (405)
+.-.|+. ................+.++.+|+.... ..+.++|+++.+ |+. . ...|....
T Consensus 94 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~l~~~d~~tG~~~w~~----~-~~~~~~~~~~ 159 (238)
T PF13360_consen 94 KTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS---------GKLVALDPKTGKLLWKY----P-VGEPRGSSPI 159 (238)
T ss_dssp TTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC---------SEEEEEETTTTEEEEEE----E-SSTT-SS--E
T ss_pred CCcceeeeeccccccccccccccCceEecCEEEEEecc---------CcEEEEecCCCcEEEEe----e-cCCCCCCcce
Confidence 4455873 2211111112222344457777776532 489999998765 431 1 23322111
Q ss_pred ------cCceEEeCCcEEEEEccccccccCccceEEEEEEeCce--eEEEeccChhHHhccCCCCceeE-EeeCCCEEEE
Q 015502 287 ------CGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKE--WQEVARMPHKFFQGFGEFDDVFA-SSGTDDLIYI 357 (405)
Q Consensus 287 ------~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~--W~~v~~i~~~~~~~~~~~~~~~~-~~~~~~~i~~ 357 (405)
...++..+|.+|+....+ ..+.+ ++..++ |+. . +.. ... ....++.+|+
T Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~g--------~~~~~-d~~tg~~~w~~-~-~~~-----------~~~~~~~~~~~l~~ 217 (238)
T PF13360_consen 160 SSFSDINGSPVISDGRVYVSSGDG--------RVVAV-DLATGEKLWSK-P-ISG-----------IYSLPSVDGGTLYV 217 (238)
T ss_dssp EEETTEEEEEECCTTEEEEECCTS--------SEEEE-ETTTTEEEEEE-C-SS------------ECECEECCCTEEEE
T ss_pred eeecccccceEEECCEEEEEcCCC--------eEEEE-ECCCCCEEEEe-c-CCC-----------ccCCceeeCCEEEE
Confidence 123445567777766421 12444 666544 733 2 222 122 3557899999
Q ss_pred EeCCCCeEEEEECCCCcEEE
Q 015502 358 QSYGAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 358 ~~~~~~~~~~Yd~~~~~w~~ 377 (405)
.. .+..++++|+++++-.+
T Consensus 218 ~~-~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 218 TS-SDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EE-TTTEEEEEETTTTEEEE
T ss_pred Ee-CCCEEEEEECCCCCEEe
Confidence 87 57899999999996544
No 52
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=94.35 E-value=0.067 Score=50.53 Aligned_cols=171 Identities=13% Similarity=0.096 Sum_probs=95.2
Q ss_pred EEeCcccceeeccCCCCC------CCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccc
Q 015502 151 VCNPISKSWKKLEEPPGL------KFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKE 224 (405)
Q Consensus 151 v~NP~T~~~~~lP~~~~~------~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~ 224 (405)
.=-|.+-+|..+|+-... +......--|.+++. .-.||..||-.. .+.....++|+.+.+.|..+...
T Consensus 233 ~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~--~~CiYLYGGWdG----~~~l~DFW~Y~v~e~~W~~iN~~ 306 (723)
T KOG2437|consen 233 SQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQ--TECVYLYGGWDG----TQDLADFWAYSVKENQWTCINRD 306 (723)
T ss_pred hcccccccccccCchhhcccccccCccccCcceEEEeCC--CcEEEEecCccc----chhHHHHHhhcCCcceeEEeecC
Confidence 345777888887753210 101112233444442 224666665321 12234678999999999887532
Q ss_pred -ccccccCCCccEEE--CcEEEeeEEecCC---CCCCCccEEEEEECCCCcchhhhccccc-ccCCccccCceEEeCCc-
Q 015502 225 -VLTGWRAGDESIIC--DGVLYFLIYATGG---GAPENRHGLISFNLSSRSSHALLIKSFI-PVPCALTCGRLMNLKEK- 296 (405)
Q Consensus 225 -~~~~~~~~~~~v~~--~g~iy~l~~~~~~---~~~~~~~~i~~fD~~~~~w~~~~~~~~~-~~p~~~~~~~l~~~~G~- 296 (405)
-.++.+..++.|.. ..++|.+|.+-+- ..-..+..+..||..++.|.-+-..... --|......++++-+.+
T Consensus 307 t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~ 386 (723)
T KOG2437|consen 307 TEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKH 386 (723)
T ss_pred CCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcc
Confidence 13455555666665 3499999876432 1223456799999999999732110000 01222234566776666
Q ss_pred -EEEEEccccccccCccceEEEEEEeCceeEE
Q 015502 297 -LVMVGGIGKQDRPDIIKGIGIWVLNGKEWQE 327 (405)
Q Consensus 297 -L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~ 327 (405)
||+.+|+.....+.....+-.|.++..-|+.
T Consensus 387 ~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~ 418 (723)
T KOG2437|consen 387 MIYVFGGRILTCNEPQFSGLYAFNCQCQTWKL 418 (723)
T ss_pred eEEEecCeeccCCCccccceEEEecCCccHHH
Confidence 9999887433222334556667666666643
No 53
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=94.11 E-value=0.06 Score=50.82 Aligned_cols=159 Identities=14% Similarity=0.252 Sum_probs=98.1
Q ss_pred CCCcccccccc--------cccccCCCccEEECc--EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCc
Q 015502 215 TMMWVTSWKEV--------LTGWRAGDESIICDG--VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCA 284 (405)
Q Consensus 215 ~~~W~~~~~~~--------~~~~~~~~~~v~~~g--~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~ 284 (405)
+..|..+.... -+..+.++..|...+ .+|..|+-.| .+......+|+...+.|...- +....|..
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG---~~~l~DFW~Y~v~e~~W~~iN--~~t~~PG~ 312 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG---TQDLADFWAYSVKENQWTCIN--RDTEGPGA 312 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCccc---chhHHHHHhhcCCcceeEEee--cCCCCCcc
Confidence 67787764311 123455677777766 9999986543 333456889999999998432 22356777
Q ss_pred cccCceEE--eCCcEEEEEccccccc-cCccceEEEEEEe--CceeEEEeccChhHHhccC-CCCceeEEeeCCCEEEEE
Q 015502 285 LTCGRLMN--LKEKLVMVGGIGKQDR-PDIIKGIGIWVLN--GKEWQEVARMPHKFFQGFG-EFDDVFASSGTDDLIYIQ 358 (405)
Q Consensus 285 ~~~~~l~~--~~G~L~~v~~~~~~~~-~~~~~~~~vw~l~--~~~W~~v~~i~~~~~~~~~-~~~~~~~~~~~~~~i~~~ 358 (405)
+.+..+|. +..|||+.+....... .....+-++|++| +..|..+.-=.. .--+.+ ..+.-+++.++.+.||+.
T Consensus 313 RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~-~dGGP~~vfDHqM~Vd~~k~~iyVf 391 (723)
T KOG2437|consen 313 RSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTA-ADGGPKLVFDHQMCVDSEKHMIYVF 391 (723)
T ss_pred hhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccccc-ccCCcceeecceeeEecCcceEEEe
Confidence 77777774 4569999987632211 1224567888888 478987542111 000000 012334556666678886
Q ss_pred eC--------CCCeEEEEECCCCcEEEcc
Q 015502 359 SY--------GAPSLLVYDMNLKQWRWSH 379 (405)
Q Consensus 359 ~~--------~~~~~~~Yd~~~~~w~~l~ 379 (405)
.. .-..+++||.....|+.+.
T Consensus 392 GGr~~~~~e~~f~GLYaf~~~~~~w~~l~ 420 (723)
T KOG2437|consen 392 GGRILTCNEPQFSGLYAFNCQCQTWKLLR 420 (723)
T ss_pred cCeeccCCCccccceEEEecCCccHHHHH
Confidence 43 1148999999999998864
No 54
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=94.10 E-value=0.06 Score=34.11 Aligned_cols=40 Identities=13% Similarity=0.202 Sum_probs=25.1
Q ss_pred CCCccEEE-CcEEEeeEEecCCCCCCCccEEEEEECCCCcchh
Q 015502 231 AGDESIIC-DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHA 272 (405)
Q Consensus 231 ~~~~~v~~-~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~ 272 (405)
..+.++.+ ++.||++|+... .......+..||+++++|++
T Consensus 3 ~~h~~~~~~~~~i~v~GG~~~--~~~~~~d~~~~d~~~~~W~~ 43 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGGRDS--SGSPLNDLWIFDIETNTWTR 43 (49)
T ss_dssp BS-EEEEE-TTEEEEE--EEE---TEE---EEEEETTTTEEEE
T ss_pred ceEEEEEEeCCeEEEECCCCC--CCcccCCEEEEECCCCEEEE
Confidence 44567777 699999986642 11344579999999999985
No 55
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.06 E-value=5.2 Score=37.40 Aligned_cols=246 Identities=13% Similarity=0.170 Sum_probs=122.8
Q ss_pred eeEEecCCCCeeeeccC-CCCCCCCe-EEEecCceEEEEeCC--CCce--EEEEeCcccceeeccCCCCCCCCccceeEE
Q 015502 105 IGYAYDPILRKWYGIEL-PCIETSNW-FIASSYGLVCFMDND--SRSE--LYVCNPISKSWKKLEEPPGLKFSDYSALSL 178 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~-p~~~~~~~-~~~s~~Gll~~~~~~--~~~~--~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~ 178 (405)
..+.||...+++..+.. .......+ .+...+.+|+..... .... .+-+++.+++...+...+... ...+.+
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g---~~p~~i 92 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG---SSPCHI 92 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS---SCEEEE
T ss_pred EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC---CCcEEE
Confidence 45567777777765542 12222223 344456777776653 2334 345566666776665433111 122455
Q ss_pred EEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCC-ccccc-------c-cccccccCCC-ccEEE--CcEEEeeE
Q 015502 179 SVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMM-WVTSW-------K-EVLTGWRAGD-ESIIC--DGVLYFLI 246 (405)
Q Consensus 179 ~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~-W~~~~-------~-~~~~~~~~~~-~~v~~--~g~iy~l~ 246 (405)
..++. +.|.+++ .+. .-.+.+|+...+- =.... . +.+......+ ..+.. +|+..++.
T Consensus 93 ~~~~~-g~~l~va-ny~---------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 93 AVDPD-GRFLYVA-NYG---------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EECTT-SSEEEEE-ETT---------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred EEecC-CCEEEEE-Ecc---------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 56554 3443333 221 1156666655431 11110 0 0000000111 12333 45544444
Q ss_pred EecCCCCCCCccEEEEEECCCCc--chhhhcccccccCCccccCceEEe-CC-cEEEEEccccccccCccceEEEEEEe-
Q 015502 247 YATGGGAPENRHGLISFNLSSRS--SHALLIKSFIPVPCALTCGRLMNL-KE-KLVMVGGIGKQDRPDIIKGIGIWVLN- 321 (405)
Q Consensus 247 ~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~~~~~~l~~~-~G-~L~~v~~~~~~~~~~~~~~~~vw~l~- 321 (405)
..+ ...|..|+...+. ... ...+..|....-++++.. +| .+|++... ...+.++.++
T Consensus 162 dlG-------~D~v~~~~~~~~~~~l~~---~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~--------s~~v~v~~~~~ 223 (345)
T PF10282_consen 162 DLG-------ADRVYVYDIDDDTGKLTP---VDSIKVPPGSGPRHLAFSPDGKYAYVVNEL--------SNTVSVFDYDP 223 (345)
T ss_dssp ETT-------TTEEEEEEE-TTS-TEEE---EEEEECSTTSSEEEEEE-TTSSEEEEEETT--------TTEEEEEEEET
T ss_pred ecC-------CCEEEEEEEeCCCceEEE---eeccccccCCCCcEEEEcCCcCEEEEecCC--------CCcEEEEeecc
Confidence 322 2578888887655 332 112344544444456554 44 56666643 4669999999
Q ss_pred -CceeEEEecc---ChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEEC--CCCcEEEccCCCCC
Q 015502 322 -GKEWQEVARM---PHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDM--NLKQWRWSHKCPVT 384 (405)
Q Consensus 322 -~~~W~~v~~i---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~--~~~~w~~l~~~p~~ 384 (405)
+..++.+..+ |.. +..- ....-+.+..+|+.+|+.+.....+.+|++ ++++.+.+...+..
T Consensus 224 ~~g~~~~~~~~~~~~~~-~~~~-~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~ 290 (345)
T PF10282_consen 224 SDGSLTEIQTISTLPEG-FTGE-NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG 290 (345)
T ss_dssp TTTEEEEEEEEESCETT-SCSS-SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES
T ss_pred cCCceeEEEEeeecccc-cccc-CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC
Confidence 4566665544 331 1100 011223456779999999888889999998 45688877665543
No 56
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=93.61 E-value=1.7 Score=38.16 Aligned_cols=156 Identities=12% Similarity=0.050 Sum_probs=82.1
Q ss_pred EEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCC----CcchhhhcccccccC
Q 015502 207 SIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSS----RSSHALLIKSFIPVP 282 (405)
Q Consensus 207 ~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~----~~w~~~~~~~~~~~p 282 (405)
.-.+||..+++++.... .....+....+.-||.+...++..+ ....+..|++.+ ..|.+. .-.+-
T Consensus 47 ~s~~yD~~tn~~rpl~v--~td~FCSgg~~L~dG~ll~tGG~~~-----G~~~ir~~~p~~~~~~~~w~e~----~~~m~ 115 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTV--QTDTFCSGGAFLPDGRLLQTGGDND-----GNKAIRIFTPCTSDGTCDWTES----PNDMQ 115 (243)
T ss_pred EEEEEecCCCcEEeccC--CCCCcccCcCCCCCCCEEEeCCCCc-----cccceEEEecCCCCCCCCceEC----ccccc
Confidence 45689999999987642 2222222233444999998876532 234677888876 456421 11122
Q ss_pred CccccCc-eEEeCCcEEEEEccccccccCccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeE-EeeCCCEEEEE
Q 015502 283 CALTCGR-LMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFA-SSGTDDLIYIQ 358 (405)
Q Consensus 283 ~~~~~~~-l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~-~~~~~~~i~~~ 358 (405)
..+.-.. ...-+|+++++++... ...+.|--.. .......-+. ............+. +...|+++++.
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~~~-------~t~E~~P~~~~~~~~~~~~~l~-~~~~~~~~nlYP~~~llPdG~lFi~a 187 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGSNN-------PTYEFWPPKGPGPGPVTLPFLS-QTSDTLPNNLYPFVHLLPDGNLFIFA 187 (243)
T ss_pred CCCccccceECCCCCEEEEeCcCC-------CcccccCCccCCCCceeeecch-hhhccCccccCceEEEcCCCCEEEEE
Confidence 2233333 3345799999998642 2345443321 1111111111 00000111112333 34455554444
Q ss_pred eCCCCeEEEEECCCCcE-EEccCCCCC
Q 015502 359 SYGAPSLLVYDMNLKQW-RWSHKCPVT 384 (405)
Q Consensus 359 ~~~~~~~~~Yd~~~~~w-~~l~~~p~~ 384 (405)
. ..-.+||..++++ +.+|.+|..
T Consensus 188 n---~~s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 188 N---RGSIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred c---CCcEEEeCCCCeEEeeCCCCCCC
Confidence 3 3678899999987 788888854
No 57
>PLN02772 guanylate kinase
Probab=93.58 E-value=0.38 Score=45.13 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=52.9
Q ss_pred CCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEe-CCcEEEEEcccccccc
Q 015502 231 AGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNL-KEKLVMVGGIGKQDRP 309 (405)
Q Consensus 231 ~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~-~G~L~~v~~~~~~~~~ 309 (405)
..+.++.+++++|++|+..+ ....-..+.+||..+.+|...... ...|..+.....+.. +++|+++......
T Consensus 26 ~~~tav~igdk~yv~GG~~d--~~~~~~~v~i~D~~t~~W~~P~V~--G~~P~~r~GhSa~v~~~~rilv~~~~~~~--- 98 (398)
T PLN02772 26 NRETSVTIGDKTYVIGGNHE--GNTLSIGVQILDKITNNWVSPIVL--GTGPKPCKGYSAVVLNKDRILVIKKGSAP--- 98 (398)
T ss_pred CcceeEEECCEEEEEcccCC--CccccceEEEEECCCCcEeccccc--CCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence 34678999999999996432 111335899999999999854222 233444444445545 6899999865322
Q ss_pred CccceEEEEEEe
Q 015502 310 DIIKGIGIWVLN 321 (405)
Q Consensus 310 ~~~~~~~vw~l~ 321 (405)
.=.+|-|+
T Consensus 99 ----~~~~w~l~ 106 (398)
T PLN02772 99 ----DDSIWFLE 106 (398)
T ss_pred ----ccceEEEE
Confidence 25688887
No 58
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=93.03 E-value=1.2 Score=39.13 Aligned_cols=154 Identities=14% Similarity=0.129 Sum_probs=80.4
Q ss_pred eEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCC----CCcccccc
Q 015502 148 ELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDT----MMWVTSWK 223 (405)
Q Consensus 148 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~----~~W~~~~~ 223 (405)
.-.+|||.|++++.+..... ..++.-++..|+ +++..|+... + ...+.+|++.+ ..|.+...
T Consensus 47 ~s~~yD~~tn~~rpl~v~td---~FCSgg~~L~dG-----~ll~tGG~~~-G-----~~~ir~~~p~~~~~~~~w~e~~~ 112 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTD---TFCSGGAFLPDG-----RLLQTGGDND-G-----NKAIRIFTPCTSDGTCDWTESPN 112 (243)
T ss_pred EEEEEecCCCcEEeccCCCC---CcccCcCCCCCC-----CEEEeCCCCc-c-----ccceEEEecCCCCCCCCceECcc
Confidence 34689999999999875421 112222222233 6777776532 1 34677787644 67877643
Q ss_pred cccccccCCCccEEE-CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccc-----cCCccccCceEEeCCcE
Q 015502 224 EVLTGWRAGDESIIC-DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIP-----VPCALTCGRLMNLKEKL 297 (405)
Q Consensus 224 ~~~~~~~~~~~~v~~-~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~-----~p~~~~~~~l~~~~G~L 297 (405)
. +...+...+.+.+ ||.+.++++.. .....|-+....-.......++. .+....-.-.+.-+|+|
T Consensus 113 ~-m~~~RWYpT~~~L~DG~vlIvGG~~--------~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~l 183 (243)
T PF07250_consen 113 D-MQSGRWYPTATTLPDGRVLIVGGSN--------NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNL 183 (243)
T ss_pred c-ccCCCccccceECCCCCEEEEeCcC--------CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCE
Confidence 3 3334444444444 99999998643 11222333311100000000010 11111111234558999
Q ss_pred EEEEccccccccCccceEEEEEEeCcee-EEEeccChh
Q 015502 298 VMVGGIGKQDRPDIIKGIGIWVLNGKEW-QEVARMPHK 334 (405)
Q Consensus 298 ~~v~~~~~~~~~~~~~~~~vw~l~~~~W-~~v~~i~~~ 334 (405)
++.... .-.+|+.+.+++ ..+..||..
T Consensus 184 Fi~an~----------~s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 184 FIFANR----------GSIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred EEEEcC----------CcEEEeCCCCeEEeeCCCCCCC
Confidence 988753 267787777765 556677753
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=92.58 E-value=0.089 Score=48.90 Aligned_cols=43 Identities=23% Similarity=0.465 Sum_probs=37.9
Q ss_pred cccccCCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChh
Q 015502 37 STLSVDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRR 80 (405)
Q Consensus 37 ~~~~~~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~ 80 (405)
.....| .||.+++..|++.|..+++.|++.+|+.|+..+.+..
T Consensus 68 ~~~~~~-~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 68 NNSISR-SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cccccc-cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 334446 8999999999999999999999999999999998763
No 60
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=92.52 E-value=10 Score=36.20 Aligned_cols=180 Identities=11% Similarity=0.062 Sum_probs=94.1
Q ss_pred cCceEEEEeCCCCceEEEEeCcccc--eee-ccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEE
Q 015502 134 SYGLVCFMDNDSRSELYVCNPISKS--WKK-LEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHI 210 (405)
Q Consensus 134 ~~Gll~~~~~~~~~~~~v~NP~T~~--~~~-lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~v 210 (405)
.+|.|++... ...++.+|+.|++ |+. ++... ...-.+ .+. +|++..+ .-.+..
T Consensus 119 ~~~~v~v~~~--~g~l~ald~~tG~~~W~~~~~~~~------~ssP~v-~~~-----~v~v~~~----------~g~l~a 174 (394)
T PRK11138 119 AGGKVYIGSE--KGQVYALNAEDGEVAWQTKVAGEA------LSRPVV-SDG-----LVLVHTS----------NGMLQA 174 (394)
T ss_pred ECCEEEEEcC--CCEEEEEECCCCCCcccccCCCce------ecCCEE-ECC-----EEEEECC----------CCEEEE
Confidence 4677776543 4678999999975 432 22110 111111 111 3444221 125677
Q ss_pred EeCCCC--CcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--chhhhcccccccCCcc-
Q 015502 211 YDSDTM--MWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SHALLIKSFIPVPCAL- 285 (405)
Q Consensus 211 y~s~~~--~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~~- 285 (405)
+|..++ .|+...............++..+|.+|+-... ..+.++|..+.+ |+. + +..|...
T Consensus 175 ld~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~---------g~v~a~d~~~G~~~W~~----~-~~~~~~~~ 240 (394)
T PRK11138 175 LNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN---------GRVSAVLMEQGQLIWQQ----R-ISQPTGAT 240 (394)
T ss_pred EEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC---------CEEEEEEccCChhhhee----c-cccCCCcc
Confidence 777554 48764321111112234667778888876532 379999998765 542 1 1112110
Q ss_pred -------ccCceEEeCCcEEEEEccccccccCccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEEeeCCCEEE
Q 015502 286 -------TCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIY 356 (405)
Q Consensus 286 -------~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~ 356 (405)
....-+..+|.||+.+.. ..+...++.+ ..|+.-. .. .......++.||
T Consensus 241 ~~~~~~~~~~sP~v~~~~vy~~~~~---------g~l~ald~~tG~~~W~~~~--~~-----------~~~~~~~~~~vy 298 (394)
T PRK11138 241 EIDRLVDVDTTPVVVGGVVYALAYN---------GNLVALDLRSGQIVWKREY--GS-----------VNDFAVDGGRIY 298 (394)
T ss_pred chhcccccCCCcEEECCEEEEEEcC---------CeEEEEECCCCCEEEeecC--CC-----------ccCcEEECCEEE
Confidence 112334568888877642 2244444443 3587521 11 001123577888
Q ss_pred EEeCCCCeEEEEECCCCc
Q 015502 357 IQSYGAPSLLVYDMNLKQ 374 (405)
Q Consensus 357 ~~~~~~~~~~~Yd~~~~~ 374 (405)
+.. .+..++++|.++++
T Consensus 299 ~~~-~~g~l~ald~~tG~ 315 (394)
T PRK11138 299 LVD-QNDRVYALDTRGGV 315 (394)
T ss_pred EEc-CCCeEEEEECCCCc
Confidence 865 45689999999885
No 61
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=92.52 E-value=2.5 Score=39.42 Aligned_cols=128 Identities=15% Similarity=0.102 Sum_probs=67.3
Q ss_pred EEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCcc---ccce
Q 015502 130 FIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFF---QWEL 206 (405)
Q Consensus 130 ~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~---~~~~ 206 (405)
+.+..+..|++.+. .....|||+.|+....+|.+...... .+.+.+.. +||++.......... ....
T Consensus 71 F~al~gskIv~~d~--~~~t~vyDt~t~av~~~P~l~~pk~~---pisv~VG~-----~LY~m~~~~~~~~~~~~~~~~F 140 (342)
T PF07893_consen 71 FFALHGSKIVAVDQ--SGRTLVYDTDTRAVATGPRLHSPKRC---PISVSVGD-----KLYAMDRSPFPEPAGRPDFPCF 140 (342)
T ss_pred EEEecCCeEEEEcC--CCCeEEEECCCCeEeccCCCCCCCcc---eEEEEeCC-----eEEEeeccCccccccCccceeE
Confidence 44445666666543 36689999999999999987654422 23333311 588876532111100 0022
Q ss_pred EEEEEe--------CCCCCcccccccccccccC-----CCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhh
Q 015502 207 SIHIYD--------SDTMMWVTSWKEVLTGWRA-----GDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHAL 273 (405)
Q Consensus 207 ~~~vy~--------s~~~~W~~~~~~~~~~~~~-----~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~ 273 (405)
++.+|+ ....+|+..+.|....... ..+-++++|.-.|+.... ......+||.++.+|+.+
T Consensus 141 E~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~------~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 141 EALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNG------RRWGTYSFDTESHEWRKH 214 (342)
T ss_pred EEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecC------CceEEEEEEcCCcceeec
Confidence 344454 2345677754322111111 112234456555554221 013699999999999854
No 62
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=92.34 E-value=0.29 Score=30.96 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=28.7
Q ss_pred CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc
Q 015502 239 DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC 287 (405)
Q Consensus 239 ~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~ 287 (405)
|+++|+.++... ........+.+||+.+.+|+.+ .++|..+..
T Consensus 1 g~~~~vfGG~~~-~~~~~~nd~~~~~~~~~~W~~~-----~~~P~~R~~ 43 (49)
T PF13415_consen 1 GNKLYVFGGYDD-DGGTRLNDVWVFDLDTNTWTRI-----GDLPPPRSG 43 (49)
T ss_pred CCEEEEECCcCC-CCCCEecCEEEEECCCCEEEEC-----CCCCCCccc
Confidence 578899986541 1233446799999999999853 445554443
No 63
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=92.08 E-value=0.2 Score=31.71 Aligned_cols=40 Identities=20% Similarity=0.496 Sum_probs=27.8
Q ss_pred CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChh
Q 015502 294 KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHK 334 (405)
Q Consensus 294 ~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~ 334 (405)
+++||++++... ........+-+++++..+|+++..+|..
T Consensus 1 g~~~~vfGG~~~-~~~~~~nd~~~~~~~~~~W~~~~~~P~~ 40 (49)
T PF13415_consen 1 GNKLYVFGGYDD-DGGTRLNDVWVFDLDTNTWTRIGDLPPP 40 (49)
T ss_pred CCEEEEECCcCC-CCCCEecCEEEEECCCCEEEECCCCCCC
Confidence 578999998752 1122345566777768899999877764
No 64
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.46 E-value=14 Score=35.50 Aligned_cols=147 Identities=14% Similarity=0.076 Sum_probs=78.4
Q ss_pred eEEEEEeCCCC-----CcccccccccccccCCCc-cEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc---chhhhcc
Q 015502 206 LSIHIYDSDTM-----MWVTSWKEVLTGWRAGDE-SIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS---SHALLIK 276 (405)
Q Consensus 206 ~~~~vy~s~~~-----~W~~~~~~~~~~~~~~~~-~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~---w~~~~~~ 276 (405)
..+.+.+...+ .|+.+... ...... ....++.+|++... ......|+++++.+-. |..+
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~----~~~~~~~v~~~~~~~yi~Tn~-----~a~~~~l~~~~l~~~~~~~~~~~--- 319 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPR----EDGVEYYVDHHGDRLYILTND-----DAPNGRLVAVDLADPSPAEWWTV--- 319 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEES----SSS-EEEEEEETTEEEEEE-T-----T-TT-EEEEEETTSTSGGGEEEE---
T ss_pred CeEEEEeccccCCCcCCcEEEeCC----CCceEEEEEccCCEEEEeeCC-----CCCCcEEEEecccccccccceeE---
Confidence 46777887664 56554321 111111 23448899998853 2334689999998766 4321
Q ss_pred cccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEE--eeCCCE
Q 015502 277 SFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFAS--SGTDDL 354 (405)
Q Consensus 277 ~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~--~~~~~~ 354 (405)
+++-.....-..+...++.|++....+ ....+.++.++.+.......+|... .+.+. ...++.
T Consensus 320 -l~~~~~~~~l~~~~~~~~~Lvl~~~~~------~~~~l~v~~~~~~~~~~~~~~p~~g--------~v~~~~~~~~~~~ 384 (414)
T PF02897_consen 320 -LIPEDEDVSLEDVSLFKDYLVLSYREN------GSSRLRVYDLDDGKESREIPLPEAG--------SVSGVSGDFDSDE 384 (414)
T ss_dssp -EE--SSSEEEEEEEEETTEEEEEEEET------TEEEEEEEETT-TEEEEEEESSSSS--------EEEEEES-TT-SE
T ss_pred -EcCCCCceeEEEEEEECCEEEEEEEEC------CccEEEEEECCCCcEEeeecCCcce--------EEeccCCCCCCCE
Confidence 122111112233455678888776532 3567888877722222223333211 12222 235667
Q ss_pred EEEEeC---CCCeEEEEECCCCcEEEcc
Q 015502 355 IYIQSY---GAPSLLVYDMNLKQWRWSH 379 (405)
Q Consensus 355 i~~~~~---~~~~~~~Yd~~~~~w~~l~ 379 (405)
+++... ....++.||+++++.+.+.
T Consensus 385 ~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 385 LRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred EEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 776532 3468999999999988763
No 65
>PF13854 Kelch_5: Kelch motif
Probab=90.40 E-value=0.6 Score=28.38 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=26.5
Q ss_pred ccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCC
Q 015502 229 WRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSS 267 (405)
Q Consensus 229 ~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~ 267 (405)
.+..+.++.+++.||+.|+..+ ........+..||+.+
T Consensus 4 ~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 4 PRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCC
Confidence 3556778889999999996542 1233445788888764
No 66
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=90.07 E-value=5.9 Score=35.07 Aligned_cols=138 Identities=15% Similarity=0.250 Sum_probs=79.4
Q ss_pred CCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccc------------cCceEEeCCcEE
Q 015502 231 AGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALT------------CGRLMNLKEKLV 298 (405)
Q Consensus 231 ~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~------------~~~l~~~~G~L~ 298 (405)
.+...|+.||.+|.-... ...|+.||+.++.-.. ...+|.... ...+++-+..|.
T Consensus 70 ~GtG~vVYngslYY~~~~--------s~~IvkydL~t~~v~~-----~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLW 136 (250)
T PF02191_consen 70 QGTGHVVYNGSLYYNKYN--------SRNIVKYDLTTRSVVA-----RRELPGAGYNNRFPYYWSGYTDIDFAVDENGLW 136 (250)
T ss_pred ccCCeEEECCcEEEEecC--------CceEEEEECcCCcEEE-----EEECCccccccccceecCCCceEEEEEcCCCEE
Confidence 345678899999998743 3689999999988431 123343211 123566677888
Q ss_pred EEEccccccccCccceEEEEEEeC------ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC----CCCeEEEE
Q 015502 299 MVGGIGKQDRPDIIKGIGIWVLNG------KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY----GAPSLLVY 368 (405)
Q Consensus 299 ~v~~~~~~~~~~~~~~~~vw~l~~------~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~Y 368 (405)
+|-..... ...+.|=+|+. +.|.. .++..... + .++. .+++|.... ..+..++|
T Consensus 137 vIYat~~~-----~g~ivvskld~~tL~v~~tw~T--~~~k~~~~---n--aFmv----CGvLY~~~s~~~~~~~I~yaf 200 (250)
T PF02191_consen 137 VIYATEDN-----NGNIVVSKLDPETLSVEQTWNT--SYPKRSAG---N--AFMV----CGVLYATDSYDTRDTEIFYAF 200 (250)
T ss_pred EEEecCCC-----CCcEEEEeeCcccCceEEEEEe--ccCchhhc---c--eeeE----eeEEEEEEECCCCCcEEEEEE
Confidence 88554321 12367777774 46764 23322111 0 1222 357777643 24577899
Q ss_pred ECCCCcEEEccCCCCCCCCcccceeeeeecee
Q 015502 369 DMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPR 400 (405)
Q Consensus 369 d~~~~~w~~l~~~p~~~~~~~~~~~~~~~~p~ 400 (405)
|+.+++-+.+ ..|.... ......+.|-|+
T Consensus 201 Dt~t~~~~~~-~i~f~~~--~~~~~~l~YNP~ 229 (250)
T PF02191_consen 201 DTYTGKEEDV-SIPFPNP--YGNISMLSYNPR 229 (250)
T ss_pred ECCCCceece-eeeeccc--cCceEeeeECCC
Confidence 9999987654 3443322 233456666664
No 67
>smart00284 OLF Olfactomedin-like domains.
Probab=89.83 E-value=4.7 Score=35.61 Aligned_cols=137 Identities=17% Similarity=0.267 Sum_probs=76.7
Q ss_pred CCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCc-------c-----ccCceEEeCCcEEE
Q 015502 232 GDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCA-------L-----TCGRLMNLKEKLVM 299 (405)
Q Consensus 232 ~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~-------~-----~~~~l~~~~G~L~~ 299 (405)
+...|+.||.+|+-... ...|+.||+.++.-.. ...+|.. + ....+++-+.-|-+
T Consensus 76 GtG~VVYngslYY~~~~--------s~~iiKydL~t~~v~~-----~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWv 142 (255)
T smart00284 76 GTGVVVYNGSLYFNKFN--------SHDICRFDLTTETYQK-----EPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWV 142 (255)
T ss_pred cccEEEECceEEEEecC--------CccEEEEECCCCcEEE-----EEecCccccccccccccCCCccEEEEEcCCceEE
Confidence 45678999999996532 2579999999988531 1223321 1 11236677778888
Q ss_pred EEccccccccCccceEEEEEEeC------ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC----CCCeEEEEE
Q 015502 300 VGGIGKQDRPDIIKGIGIWVLNG------KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY----GAPSLLVYD 369 (405)
Q Consensus 300 v~~~~~~~~~~~~~~~~vw~l~~------~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~Yd 369 (405)
|=..... ...+.|=+|++ +.|.. .++..-. + ..++. .+++|+... ..+..++||
T Consensus 143 IYat~~~-----~g~ivvSkLnp~tL~ve~tW~T--~~~k~sa---~--naFmv----CGvLY~~~s~~~~~~~I~yayD 206 (255)
T smart00284 143 IYATEQN-----AGKIVISKLNPATLTIENTWIT--TYNKRSA---S--NAFMI----CGILYVTRSLGSKGEKVFYAYD 206 (255)
T ss_pred EEeccCC-----CCCEEEEeeCcccceEEEEEEc--CCCcccc---c--ccEEE----eeEEEEEccCCCCCcEEEEEEE
Confidence 8543221 24466667764 46766 2222111 1 01222 357777642 346788999
Q ss_pred CCCCcEEEccCCCCCCCCcccceeeeeecee
Q 015502 370 MNLKQWRWSHKCPVTKRFPLQLFTGFCFEPR 400 (405)
Q Consensus 370 ~~~~~w~~l~~~p~~~~~~~~~~~~~~~~p~ 400 (405)
..+++-+.+ ..|.... ......+-|-|+
T Consensus 207 t~t~~~~~~-~i~f~n~--y~~~s~l~YNP~ 234 (255)
T smart00284 207 TNTGKEGHL-DIPFENM--YEYISMLDYNPN 234 (255)
T ss_pred CCCCcccee-eeeeccc--cccceeceeCCC
Confidence 999875543 4443322 233445555553
No 68
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=89.25 E-value=9.5 Score=33.88 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=67.0
Q ss_pred EEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEE
Q 015502 130 FIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIH 209 (405)
Q Consensus 130 ~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~ 209 (405)
+|+.-+|-|...... .+-+..+||+++.-..+|.+.... ... =.+..|+.. .+.+. ... .-.++
T Consensus 194 i~atpdGsvwyasla-gnaiaridp~~~~aev~p~P~~~~-~gs--Rriwsdpig---~~wit-twg--------~g~l~ 257 (353)
T COG4257 194 ICATPDGSVWYASLA-GNAIARIDPFAGHAEVVPQPNALK-AGS--RRIWSDPIG---RAWIT-TWG--------TGSLH 257 (353)
T ss_pred eEECCCCcEEEEecc-ccceEEcccccCCcceecCCCccc-ccc--cccccCccC---cEEEe-ccC--------Cceee
Confidence 677778887776432 366788999999888887664211 100 112233332 23332 111 23789
Q ss_pred EEeCCCCCcccccccccccccCCCccEEE-CcEEEeeEEecCCCCCCCccEEEEEECCCCcch
Q 015502 210 IYDSDTMMWVTSWKEVLTGWRAGDESIIC-DGVLYFLIYATGGGAPENRHGLISFNLSSRSSH 271 (405)
Q Consensus 210 vy~s~~~~W~~~~~~~~~~~~~~~~~v~~-~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~ 271 (405)
.|+....+|++-..| +......++.+ +.-..|+... ....|..||+++.+|+
T Consensus 258 rfdPs~~sW~eypLP---gs~arpys~rVD~~grVW~sea-------~agai~rfdpeta~ft 310 (353)
T COG4257 258 RFDPSVTSWIEYPLP---GSKARPYSMRVDRHGRVWLSEA-------DAGAIGRFDPETARFT 310 (353)
T ss_pred EeCcccccceeeeCC---CCCCCcceeeeccCCcEEeecc-------ccCceeecCcccceEE
Confidence 999999999885422 22222234554 2234455322 1258999999999986
No 69
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=89.10 E-value=15 Score=32.26 Aligned_cols=202 Identities=17% Similarity=0.205 Sum_probs=102.2
Q ss_pred cCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeC
Q 015502 134 SYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDS 213 (405)
Q Consensus 134 ~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s 213 (405)
..|-|++.+.. ...++.++|.+++...+..+. ..++.++... -++++... ....++|.
T Consensus 10 ~~g~l~~~D~~-~~~i~~~~~~~~~~~~~~~~~--------~~G~~~~~~~--g~l~v~~~-----------~~~~~~d~ 67 (246)
T PF08450_consen 10 RDGRLYWVDIP-GGRIYRVDPDTGEVEVIDLPG--------PNGMAFDRPD--GRLYVADS-----------GGIAVVDP 67 (246)
T ss_dssp TTTEEEEEETT-TTEEEEEETTTTEEEEEESSS--------EEEEEEECTT--SEEEEEET-----------TCEEEEET
T ss_pred CCCEEEEEEcC-CCEEEEEECCCCeEEEEecCC--------CceEEEEccC--CEEEEEEc-----------CceEEEec
Confidence 35667776643 478999999999876654332 2355554211 24454432 24566688
Q ss_pred CCCCcccccccccc--cccCCCcc-EEECcEEEeeEEecCCCCCCCc--cEEEEEECCCCcchhhhcccccccCCccccC
Q 015502 214 DTMMWVTSWKEVLT--GWRAGDES-IICDGVLYFLIYATGGGAPENR--HGLISFNLSSRSSHALLIKSFIPVPCALTCG 288 (405)
Q Consensus 214 ~~~~W~~~~~~~~~--~~~~~~~~-v~~~g~iy~l~~~~~~~~~~~~--~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~ 288 (405)
.++.++........ .....+.. +--+|.+|+-...... .... ..++.+++. .+...+. ..+..| .
T Consensus 68 ~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~--~~~~~~g~v~~~~~~-~~~~~~~--~~~~~p----N- 137 (246)
T PF08450_consen 68 DTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGG--ASGIDPGSVYRIDPD-GKVTVVA--DGLGFP----N- 137 (246)
T ss_dssp TTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBC--TTCGGSEEEEEEETT-SEEEEEE--EEESSE----E-
T ss_pred CCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCc--cccccccceEEECCC-CeEEEEe--cCcccc----c-
Confidence 88888765432100 11111112 2228888876543211 1112 579999998 4433110 111222 1
Q ss_pred ceE-EeCCc-EEEEEccccccccCccceEEEEEEeCc--eeEEEe---ccChhHHhccCCCCceeEEeeCCCEEEEEeCC
Q 015502 289 RLM-NLKEK-LVMVGGIGKQDRPDIIKGIGIWVLNGK--EWQEVA---RMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG 361 (405)
Q Consensus 289 ~l~-~~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~~--~W~~v~---~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 361 (405)
.++ .-+|+ ||+.... ...+..+.++.. ++.... .++... ...+-+++.. .+.||+....
T Consensus 138 Gi~~s~dg~~lyv~ds~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----g~pDG~~vD~-~G~l~va~~~ 203 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSF--------NGRIWRFDLDADGGELSNRRVFIDFPGGP-----GYPDGLAVDS-DGNLWVADWG 203 (246)
T ss_dssp EEEEETTSSEEEEEETT--------TTEEEEEEEETTTCCEEEEEEEEE-SSSS-----CEEEEEEEBT-TS-EEEEEET
T ss_pred ceEECCcchheeecccc--------cceeEEEeccccccceeeeeeEEEcCCCC-----cCCCcceEcC-CCCEEEEEcC
Confidence 233 34565 6665542 244666777642 344322 222211 0112334333 5567887666
Q ss_pred CCeEEEEECCCCcEEEccCCC
Q 015502 362 APSLLVYDMNLKQWRWSHKCP 382 (405)
Q Consensus 362 ~~~~~~Yd~~~~~w~~l~~~p 382 (405)
...+++||++.+....++ .|
T Consensus 204 ~~~I~~~~p~G~~~~~i~-~p 223 (246)
T PF08450_consen 204 GGRIVVFDPDGKLLREIE-LP 223 (246)
T ss_dssp TTEEEEEETTSCEEEEEE--S
T ss_pred CCEEEEECCCccEEEEEc-CC
Confidence 789999999965555553 44
No 70
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.22 E-value=26 Score=32.90 Aligned_cols=179 Identities=16% Similarity=0.144 Sum_probs=86.3
Q ss_pred ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCC---CCCcccccc
Q 015502 147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSD---TMMWVTSWK 223 (405)
Q Consensus 147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~---~~~W~~~~~ 223 (405)
..+.+||..|++.+.+-+.. .. .+....+..|++ +. ++.|+. ...+..+|.. -+.|+-...
T Consensus 291 e~~~lwDv~tgd~~~~y~~~--~~--~S~~sc~W~pDg--~~-~V~Gs~---------dr~i~~wdlDgn~~~~W~gvr~ 354 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSG--LG--FSVSSCAWCPDG--FR-FVTGSP---------DRTIIMWDLDGNILGNWEGVRD 354 (519)
T ss_pred HheeeccCCcchhhhhcccC--cC--CCcceeEEccCC--ce-eEecCC---------CCcEEEecCCcchhhccccccc
Confidence 45778999998887663321 11 111222222332 22 333421 2356666653 567877643
Q ss_pred cccccccCCCccEEECc-EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEc
Q 015502 224 EVLTGWRAGDESIICDG-VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGG 302 (405)
Q Consensus 224 ~~~~~~~~~~~~v~~~g-~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~ 302 (405)
|-.. .-++..+| .++.++.. ..+.-|+.++..=.. .+..... ....-...+|++.++..
T Consensus 355 ~~v~-----dlait~Dgk~vl~v~~d---------~~i~l~~~e~~~dr~-----lise~~~-its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 355 PKVH-----DLAITYDGKYVLLVTVD---------KKIRLYNREARVDRG-----LISEEQP-ITSFSISKDGKLALVNL 414 (519)
T ss_pred ceeE-----EEEEcCCCcEEEEEecc---------cceeeechhhhhhhc-----cccccCc-eeEEEEcCCCcEEEEEc
Confidence 2110 11233344 44445432 357777776654110 1221111 12223455789999986
Q ss_pred cccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEe-CCCCeEEEEECCCCcE
Q 015502 303 IGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQS-YGAPSLLVYDMNLKQW 375 (405)
Q Consensus 303 ~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~Yd~~~~~w 375 (405)
. ...+.+|+++ +|..+.+. +---.+...+-.|.|.++.-|+.+ .++..++++|..+++-
T Consensus 415 ~--------~qei~LWDl~--e~~lv~kY----~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl 474 (519)
T KOG0293|consen 415 Q--------DQEIHLWDLE--ENKLVRKY----FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL 474 (519)
T ss_pred c--------cCeeEEeecc--hhhHHHHh----hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce
Confidence 3 3569999998 55443321 100000112334544444334433 3566777777776654
No 71
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=87.13 E-value=27 Score=32.93 Aligned_cols=213 Identities=15% Similarity=0.150 Sum_probs=105.7
Q ss_pred CeeEEecCCCCe--eeeccCCCCCCCCeEEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEe
Q 015502 104 PIGYAYDPILRK--WYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVD 181 (405)
Q Consensus 104 ~~~~~~d~~~~~--w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~ 181 (405)
...+++|...++ |.. .++..... -....++.+++... ...++.+|+.|++-.---..+... .....+ .
T Consensus 75 g~v~a~d~~tG~~~W~~-~~~~~~~~--~p~v~~~~v~v~~~--~g~l~ald~~tG~~~W~~~~~~~~---~~~p~v-~- 144 (377)
T TIGR03300 75 GTVVALDAETGKRLWRV-DLDERLSG--GVGADGGLVFVGTE--KGEVIALDAEDGKELWRAKLSSEV---LSPPLV-A- 144 (377)
T ss_pred CeEEEEEccCCcEeeee-cCCCCccc--ceEEcCCEEEEEcC--CCEEEEEECCCCcEeeeeccCcee---ecCCEE-E-
Confidence 357788876654 532 22211111 12234677776543 367889999887643211111100 000111 1
Q ss_pred CCCCcEEEEEEeeeccCCCccccceEEEEEeCCC--CCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccE
Q 015502 182 RVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDT--MMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHG 259 (405)
Q Consensus 182 ~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~--~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~ 259 (405)
+. +|++... .-.+..+|..+ -.|+...............++..+|.+|+-.. ...
T Consensus 145 ---~~-~v~v~~~----------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~---------~g~ 201 (377)
T TIGR03300 145 ---NG-LVVVRTN----------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFA---------GGK 201 (377)
T ss_pred ---CC-EEEEECC----------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECC---------CCE
Confidence 11 3444321 12567777654 45765432111112223456777887765432 137
Q ss_pred EEEEECCCCc--chhhhcccccccCCcc--------ccCceEEeCCcEEEEEccccccccCccceEEEEEEeC--ceeEE
Q 015502 260 LISFNLSSRS--SHALLIKSFIPVPCAL--------TCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQE 327 (405)
Q Consensus 260 i~~fD~~~~~--w~~~~~~~~~~~p~~~--------~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~ 327 (405)
+.++|+++.+ |+. . ...|... .....+..+|.+|+.+.. ..+..+++++ ..|..
T Consensus 202 v~ald~~tG~~~W~~----~-~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~---------g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 202 LVALDLQTGQPLWEQ----R-VALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ---------GRVAALDLRSGRVLWKR 267 (377)
T ss_pred EEEEEccCCCEeeee----c-cccCCCCCchhhhhccCCccEEECCEEEEEEcC---------CEEEEEECCCCcEEEee
Confidence 9999997754 542 1 1112110 112334567888877642 2366666654 35765
Q ss_pred EeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCc--EEE
Q 015502 328 VARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQ--WRW 377 (405)
Q Consensus 328 v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~--w~~ 377 (405)
-. +. . ..+ ...++.||+.. .+..++++|..+++ |+.
T Consensus 268 ~~--~~--------~-~~p--~~~~~~vyv~~-~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 268 DA--SS--------Y-QGP--AVDDNRLYVTD-ADGVVVALDRRSGSELWKN 305 (377)
T ss_pred cc--CC--------c-cCc--eEeCCEEEEEC-CCCeEEEEECCCCcEEEcc
Confidence 31 10 0 011 12577888864 45689999998874 544
No 72
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=86.92 E-value=29 Score=33.05 Aligned_cols=105 Identities=12% Similarity=0.203 Sum_probs=60.8
Q ss_pred CccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--chhhhcccccccCCccccCceEEeCCcEEEEEccccccccC
Q 015502 233 DESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPD 310 (405)
Q Consensus 233 ~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~ 310 (405)
..+++.+|.+|+.... ..+.++|+.+.+ |+. +... ...++..+|+||+....
T Consensus 250 ~sP~v~~~~vy~~~~~---------g~l~ald~~tG~~~W~~-------~~~~---~~~~~~~~~~vy~~~~~------- 303 (394)
T PRK11138 250 TTPVVVGGVVYALAYN---------GNLVALDLRSGQIVWKR-------EYGS---VNDFAVDGGRIYLVDQN------- 303 (394)
T ss_pred CCcEEECCEEEEEEcC---------CeEEEEECCCCCEEEee-------cCCC---ccCcEEECCEEEEEcCC-------
Confidence 4577889999987643 379999998764 542 1111 12356678899987642
Q ss_pred ccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEE
Q 015502 311 IIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWR 376 (405)
Q Consensus 311 ~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~ 376 (405)
..+...+.++ ..|..-. +..... ... ...++.||+.. .+..++++|.++++-.
T Consensus 304 --g~l~ald~~tG~~~W~~~~-~~~~~~------~sp---~v~~g~l~v~~-~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 304 --DRVYALDTRGGVELWSQSD-LLHRLL------TAP---VLYNGYLVVGD-SEGYLHWINREDGRFV 358 (394)
T ss_pred --CeEEEEECCCCcEEEcccc-cCCCcc------cCC---EEECCEEEEEe-CCCEEEEEECCCCCEE
Confidence 2244444443 3575311 111000 011 12467788764 4567889999988643
No 73
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=86.14 E-value=29 Score=32.35 Aligned_cols=118 Identities=14% Similarity=0.194 Sum_probs=66.6
Q ss_pred cEEEeeEEecCCCCCCCccEEEEEECC--CCcchhhhcccccccCCcc----ccCceEEe-CCc-EEEEEccccccccCc
Q 015502 240 GVLYFLIYATGGGAPENRHGLISFNLS--SRSSHALLIKSFIPVPCAL----TCGRLMNL-KEK-LVMVGGIGKQDRPDI 311 (405)
Q Consensus 240 g~iy~l~~~~~~~~~~~~~~i~~fD~~--~~~w~~~~~~~~~~~p~~~----~~~~l~~~-~G~-L~~v~~~~~~~~~~~ 311 (405)
..+|++... ...|.+|+.. +..++.+-. .-..|... ....+... +|+ ||+..+.
T Consensus 204 ~~~Yv~~e~--------s~~v~v~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-------- 265 (345)
T PF10282_consen 204 KYAYVVNEL--------SNTVSVFDYDPSDGSLTEIQT--ISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-------- 265 (345)
T ss_dssp SEEEEEETT--------TTEEEEEEEETTTTEEEEEEE--EESCETTSCSSSSEEEEEE-TTSSEEEEEECT--------
T ss_pred CEEEEecCC--------CCcEEEEeecccCCceeEEEE--eeeccccccccCCceeEEEecCCCEEEEEecc--------
Confidence 467787633 2466666666 555443211 11223222 12234444 565 5554432
Q ss_pred cceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEE--CCCCcEEEccC
Q 015502 312 IKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYD--MNLKQWRWSHK 380 (405)
Q Consensus 312 ~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd--~~~~~w~~l~~ 380 (405)
...+.+|.++. +..+.+..++.. +..+.-+.+...|+.+|+.......+.+|+ .++++++.+..
T Consensus 266 ~~sI~vf~~d~~~g~l~~~~~~~~~-----G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 266 SNSISVFDLDPATGTLTLVQTVPTG-----GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp TTEEEEEEECTTTTTEEEEEEEEES-----SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEEEecCCCceEEEEEEeCC-----CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc
Confidence 46799999964 466666555421 111233555678999999887777888885 57888988763
No 74
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=84.44 E-value=27 Score=30.55 Aligned_cols=219 Identities=16% Similarity=0.096 Sum_probs=102.4
Q ss_pred cCCCCeeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEE
Q 015502 100 SSDEPIGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLS 179 (405)
Q Consensus 100 ~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~ 179 (405)
.......+.+++..+....+..+. + .-..+...+|.+++... ....++|+.++++..+...+.........--+.
T Consensus 18 D~~~~~i~~~~~~~~~~~~~~~~~-~-~G~~~~~~~g~l~v~~~---~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~ 92 (246)
T PF08450_consen 18 DIPGGRIYRVDPDTGEVEVIDLPG-P-NGMAFDRPDGRLYVADS---GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVA 92 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEESSS-E-EEEEEECTTSEEEEEET---TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEE
T ss_pred EcCCCEEEEEECCCCeEEEEecCC-C-ceEEEEccCCEEEEEEc---CceEEEecCCCcEEEEeeccCCCcccCCCceEE
Confidence 334445677888777655555443 1 11123334677777654 445666999999988765531110111122344
Q ss_pred EeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE--Cc-EEEeeEEecCCCCCCC
Q 015502 180 VDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DG-VLYFLIYATGGGAPEN 256 (405)
Q Consensus 180 ~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g-~iy~l~~~~~~~~~~~ 256 (405)
+|+.. .+++........... ..-.+..++.. ++....... .. ..+++.+ +| .+|+... .
T Consensus 93 vd~~G---~ly~t~~~~~~~~~~-~~g~v~~~~~~-~~~~~~~~~----~~-~pNGi~~s~dg~~lyv~ds--------~ 154 (246)
T PF08450_consen 93 VDPDG---NLYVTDSGGGGASGI-DPGSVYRIDPD-GKVTVVADG----LG-FPNGIAFSPDGKTLYVADS--------F 154 (246)
T ss_dssp E-TTS----EEEEEECCBCTTCG-GSEEEEEEETT-SEEEEEEEE----ES-SEEEEEEETTSSEEEEEET--------T
T ss_pred EcCCC---CEEEEecCCCccccc-cccceEEECCC-CeEEEEecC----cc-cccceEECCcchheeeccc--------c
Confidence 55544 355543211111100 01356667766 554443221 11 1234444 45 5777542 2
Q ss_pred ccEEEEEECCCCcc--hhhhcccccccCCcc--ccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccC
Q 015502 257 RHGLISFNLSSRSS--HALLIKSFIPVPCAL--TCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMP 332 (405)
Q Consensus 257 ~~~i~~fD~~~~~w--~~~~~~~~~~~p~~~--~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~ 332 (405)
...|.+||+..+.. ... ..++..+... ..+-.+..+|.|++.... ...+.++..+ ++=...-.+|
T Consensus 155 ~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~g~pDG~~vD~~G~l~va~~~--------~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNR--RVFIDFPGGPGYPDGLAVDSDGNLWVADWG--------GGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp TTEEEEEEEETTTCCEEEE--EEEEE-SSSSCEEEEEEEBTTS-EEEEEET--------TTEEEEEETT-SCEEEEEE-S
T ss_pred cceeEEEeccccccceeee--eeEEEcCCCCcCCCcceEcCCCCEEEEEcC--------CCEEEEECCC-ccEEEEEcCC
Confidence 35799999965442 211 0122333322 112234467999988642 2346666655 3333333344
Q ss_pred hhHHhccCCCCceeEEee-CCCEEEEEe
Q 015502 333 HKFFQGFGEFDDVFASSG-TDDLIYIQS 359 (405)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~ 359 (405)
-.. ..-+++.+ ..+.+|+..
T Consensus 224 ~~~-------~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 224 VPR-------PTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSS-------EEEEEEESTTSSEEEEEE
T ss_pred CCC-------EEEEEEECCCCCEEEEEe
Confidence 211 11223333 567888864
No 75
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=82.43 E-value=31 Score=29.72 Aligned_cols=108 Identities=9% Similarity=0.094 Sum_probs=61.6
Q ss_pred cEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--chhhhcccccccCCccccCceEEeCCcEEEEEccccccccCcc
Q 015502 235 SIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDII 312 (405)
Q Consensus 235 ~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~ 312 (405)
++.-+|.+|+... ...|.++|..+.+ |+ ...+...... ....+++|++....
T Consensus 32 ~~~~~~~v~~~~~---------~~~l~~~d~~tG~~~W~-------~~~~~~~~~~-~~~~~~~v~v~~~~--------- 85 (238)
T PF13360_consen 32 AVPDGGRVYVASG---------DGNLYALDAKTGKVLWR-------FDLPGPISGA-PVVDGGRVYVGTSD--------- 85 (238)
T ss_dssp EEEETTEEEEEET---------TSEEEEEETTTSEEEEE-------EECSSCGGSG-EEEETTEEEEEETT---------
T ss_pred EEEeCCEEEEEcC---------CCEEEEEECCCCCEEEE-------eeccccccce-eeecccccccccce---------
Confidence 3447889988842 2489999997765 43 2323322222 46778888888731
Q ss_pred ceEEEEEEeC--ceeE-EEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcE
Q 015502 313 KGIGIWVLNG--KEWQ-EVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQW 375 (405)
Q Consensus 313 ~~~~vw~l~~--~~W~-~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w 375 (405)
..+..++..+ ..|+ ....-+..... ........++.+++... ...++++|+++++-
T Consensus 86 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 86 GSLYALDAKTGKVLWSIYLTSSPPAGVR------SSSSPAVDGDRLYVGTS-SGKLVALDPKTGKL 144 (238)
T ss_dssp SEEEEEETTTSCEEEEEEE-SSCTCSTB--------SEEEEETTEEEEEET-CSEEEEEETTTTEE
T ss_pred eeeEecccCCcceeeeeccccccccccc------cccCceEecCEEEEEec-cCcEEEEecCCCcE
Confidence 2244444333 3688 44332221110 11122234778877653 56899999998855
No 76
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=82.32 E-value=42 Score=31.08 Aligned_cols=83 Identities=28% Similarity=0.360 Sum_probs=46.1
Q ss_pred CceEEe---CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCC-EEEEEeCCCC
Q 015502 288 GRLMNL---KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDD-LIYIQSYGAP 363 (405)
Q Consensus 288 ~~l~~~---~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~ 363 (405)
.+++.+ .|+||++.+.+ .........-+||.+|-..=+++.+++.+--. ..+++..+.+ ++|.....+.
T Consensus 240 ~Q~~A~~~~~~rlyvLMh~g-~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~------~Si~Vsqd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 240 WQLIAYHAASGRLYVLMHQG-GEGSHKDPGTEVWVYDLKTHKRVARIPLEHPI------DSIAVSQDDKPLLYALSAGDG 312 (342)
T ss_dssp SS-EEEETTTTEEEEEEEE---TT-TTS-EEEEEEEETTTTEEEEEEEEEEEE------SEEEEESSSS-EEEEEETTTT
T ss_pred eeeeeeccccCeEEEEecCC-CCCCccCCceEEEEEECCCCeEEEEEeCCCcc------ceEEEccCCCcEEEEEcCCCC
Confidence 344443 47999886532 22233345689999996554566666532100 1234444444 5665555667
Q ss_pred eEEEEECCCCcEEE
Q 015502 364 SLLVYDMNLKQWRW 377 (405)
Q Consensus 364 ~~~~Yd~~~~~w~~ 377 (405)
.+++||..+++-..
T Consensus 313 ~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 313 TLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEETTT--EEE
T ss_pred eEEEEeCcCCcEEe
Confidence 89999999996543
No 77
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=81.59 E-value=52 Score=31.69 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=0.0
Q ss_pred CccEEECcEEEeeEEecCCCCC---------------------------------CCccEEEEEECCCCcchhhhccccc
Q 015502 233 DESIICDGVLYFLIYATGGGAP---------------------------------ENRHGLISFNLSSRSSHALLIKSFI 279 (405)
Q Consensus 233 ~~~v~~~g~iy~l~~~~~~~~~---------------------------------~~~~~i~~fD~~~~~w~~~~~~~~~ 279 (405)
..++.+++.+|++..+.|.+.- +....|.-|||++++-+.+ .|
T Consensus 229 S~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekl----dI 304 (668)
T COG4946 229 SSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKL----DI 304 (668)
T ss_pred CCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceee----ec
Q ss_pred ccCCcc---------------------ccCceEEeCCcEEEEEccccc-----------------------cccCccceE
Q 015502 280 PVPCAL---------------------TCGRLMNLKEKLVMVGGIGKQ-----------------------DRPDIIKGI 315 (405)
Q Consensus 280 ~~p~~~---------------------~~~~l~~~~G~L~~v~~~~~~-----------------------~~~~~~~~~ 315 (405)
.+|..+ ......++.|+-++....... .+....+.+
T Consensus 305 ~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l 384 (668)
T COG4946 305 GLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKL 384 (668)
T ss_pred CCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceE
Q ss_pred EEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEccCCCCCCCCcccceeee
Q 015502 316 GIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGF 395 (405)
Q Consensus 316 ~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~~p~~~~~~~~~~~~~ 395 (405)
.|+..+..+-+++..=-..++. +++...|+.+.+.+ ....+.++|+++++-+.+ ...+....++|
T Consensus 385 ~iyd~~~~e~kr~e~~lg~I~a--------v~vs~dGK~~vvaN-dr~el~vididngnv~~i------dkS~~~lItdf 449 (668)
T COG4946 385 GIYDKDGGEVKRIEKDLGNIEA--------VKVSPDGKKVVVAN-DRFELWVIDIDNGNVRLI------DKSEYGLITDF 449 (668)
T ss_pred EEEecCCceEEEeeCCccceEE--------EEEcCCCcEEEEEc-CceEEEEEEecCCCeeEe------cccccceeEEE
Q ss_pred eecee
Q 015502 396 CFEPR 400 (405)
Q Consensus 396 ~~~p~ 400 (405)
...|+
T Consensus 450 ~~~~n 454 (668)
T COG4946 450 DWHPN 454 (668)
T ss_pred EEcCC
No 78
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=81.44 E-value=35 Score=29.65 Aligned_cols=97 Identities=9% Similarity=0.074 Sum_probs=59.0
Q ss_pred CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccc
Q 015502 146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEV 225 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~ 225 (405)
++.+++||..|++..+--- .+....+++.|.-+. .|++.++. ...+.+||-++.+-..+. .
T Consensus 80 Dk~v~vwDV~TGkv~Rr~r---gH~aqVNtV~fNees-----SVv~Sgsf---------D~s~r~wDCRS~s~ePiQ--i 140 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFR---GHLAQVNTVRFNEES-----SVVASGSF---------DSSVRLWDCRSRSFEPIQ--I 140 (307)
T ss_pred CceEEEEEcccCeeeeecc---cccceeeEEEecCcc-----eEEEeccc---------cceeEEEEcccCCCCccc--h
Confidence 4889999999998754210 111112334443221 46665543 347889998888775543 2
Q ss_pred cccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc
Q 015502 226 LTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS 269 (405)
Q Consensus 226 ~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~ 269 (405)
.........++.+.+...+-+... ..+-.||+...+
T Consensus 141 ldea~D~V~Si~v~~heIvaGS~D--------GtvRtydiR~G~ 176 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAEHEIVAGSVD--------GTVRTYDIRKGT 176 (307)
T ss_pred hhhhcCceeEEEecccEEEeeccC--------CcEEEEEeecce
Confidence 333344556777888777766432 378999997665
No 79
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=81.26 E-value=26 Score=31.15 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=64.3
Q ss_pred ECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEE
Q 015502 238 CDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGI 317 (405)
Q Consensus 238 ~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~v 317 (405)
.+|.+|--.+. ..+..|..+|+.+.+-. ...++|.....=.+...+++|+.++=. ....-+
T Consensus 54 ~~g~LyESTG~------yG~S~l~~~d~~tg~~~-----~~~~l~~~~FgEGit~~~d~l~qLTWk--------~~~~f~ 114 (264)
T PF05096_consen 54 DDGTLYESTGL------YGQSSLRKVDLETGKVL-----QSVPLPPRYFGEGITILGDKLYQLTWK--------EGTGFV 114 (264)
T ss_dssp ETTEEEEEECS------TTEEEEEEEETTTSSEE-----EEEE-TTT--EEEEEEETTEEEEEESS--------SSEEEE
T ss_pred CCCEEEEeCCC------CCcEEEEEEECCCCcEE-----EEEECCccccceeEEEECCEEEEEEec--------CCeEEE
Confidence 46788877643 24578999999998743 246778777666788999999999842 233555
Q ss_pred EEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCC
Q 015502 318 WVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLK 373 (405)
Q Consensus 318 w~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~ 373 (405)
|+. ...+++.+++.. + ...|.+.+|+.+++.. +...+...|+++=
T Consensus 115 yd~--~tl~~~~~~~y~-----~---EGWGLt~dg~~Li~SD-GS~~L~~~dP~~f 159 (264)
T PF05096_consen 115 YDP--NTLKKIGTFPYP-----G---EGWGLTSDGKRLIMSD-GSSRLYFLDPETF 159 (264)
T ss_dssp EET--TTTEEEEEEE-S-----S---S--EEEECSSCEEEE--SSSEEEEE-TTT-
T ss_pred Ecc--ccceEEEEEecC-----C---cceEEEcCCCEEEEEC-CccceEEECCccc
Confidence 544 445555554431 0 1235555666666653 5678888888764
No 80
>PF13854 Kelch_5: Kelch motif
Probab=80.97 E-value=3.6 Score=24.88 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=24.2
Q ss_pred CCccccCceEEeCCcEEEEEccccccccCccceEEEEEEe
Q 015502 282 PCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLN 321 (405)
Q Consensus 282 p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~ 321 (405)
|..+....++..+++||+.++.... . ....=++|.|+
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~~-~--~~~~~d~~~l~ 38 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSGN-N--NSYSNDLYVLD 38 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccCC-C--CCEECcEEEEE
Confidence 5556666788889999999997531 1 12334666665
No 81
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=80.61 E-value=37 Score=29.40 Aligned_cols=162 Identities=11% Similarity=0.042 Sum_probs=80.2
Q ss_pred EEEEEeCCCCCcccccccccccccCCC--ccEEEC-----cEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhccccc
Q 015502 207 SIHIYDSDTMMWVTSWKEVLTGWRAGD--ESIICD-----GVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFI 279 (405)
Q Consensus 207 ~~~vy~s~~~~W~~~~~~~~~~~~~~~--~~v~~~-----g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~ 279 (405)
.+.|+++.|++|+..+.+......... .+.-++ =|+-.+....+ ......+..|++.++.|..+. .
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~---~~~~~~~~Vys~~~~~Wr~~~----~ 87 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG---NRNQSEHQVYTLGSNSWRTIE----C 87 (230)
T ss_pred cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC---CCCCccEEEEEeCCCCccccc----c
Confidence 678999999999887532111000000 011111 13333322110 112357889999999998532 1
Q ss_pred ccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEe
Q 015502 280 PVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQS 359 (405)
Q Consensus 280 ~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 359 (405)
..+.......-+..+|.||.+....... ....+-.|++.+++|.+.-.+|...... . ....+..-++.+.+..
T Consensus 88 ~~~~~~~~~~~v~~~G~lyw~~~~~~~~---~~~~IvsFDl~~E~f~~~i~~P~~~~~~---~-~~~~L~~~~G~L~~v~ 160 (230)
T TIGR01640 88 SPPHHPLKSRGVCINGVLYYLAYTLKTN---PDYFIVSFDVSSERFKEFIPLPCGNSDS---V-DYLSLINYKGKLAVLK 160 (230)
T ss_pred CCCCccccCCeEEECCEEEEEEEECCCC---CcEEEEEEEcccceEeeeeecCcccccc---c-cceEEEEECCEEEEEE
Confidence 1121111222456799999997542211 1125777888899999633455422110 0 0112222234555443
Q ss_pred C--CCCeEEEEECC---CCcEEEccCCC
Q 015502 360 Y--GAPSLLVYDMN---LKQWRWSHKCP 382 (405)
Q Consensus 360 ~--~~~~~~~Yd~~---~~~w~~l~~~p 382 (405)
. ....+.++-++ .++|+++-..+
T Consensus 161 ~~~~~~~~~IWvl~d~~~~~W~k~~~i~ 188 (230)
T TIGR01640 161 QKKDTNNFDLWVLNDAGKQEWSKLFTVP 188 (230)
T ss_pred ecCCCCcEEEEEECCCCCCceeEEEEEc
Confidence 2 11235565555 56798864443
No 82
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=80.06 E-value=44 Score=29.89 Aligned_cols=222 Identities=12% Similarity=0.109 Sum_probs=118.8
Q ss_pred EecCCCCeeeeccCCCCCCCCe-EEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCc
Q 015502 108 AYDPILRKWYGIELPCIETSNW-FIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHR 186 (405)
Q Consensus 108 ~~d~~~~~w~~~~~p~~~~~~~-~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ 186 (405)
..||.+++....+++.-...+. +++-.++..++ +. ..-+.-++|.|.+..+.|-+-. + ...+.--..+|+..
T Consensus 87 hLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Wit-d~--~~aI~R~dpkt~evt~f~lp~~-~-a~~nlet~vfD~~G-- 159 (353)
T COG4257 87 HLDPATGEVETYPLGSGASPHGIVVGPDGSAWIT-DT--GLAIGRLDPKTLEVTRFPLPLE-H-ADANLETAVFDPWG-- 159 (353)
T ss_pred ecCCCCCceEEEecCCCCCCceEEECCCCCeeEe-cC--cceeEEecCcccceEEeecccc-c-CCCcccceeeCCCc--
Confidence 4788888888888775444444 44444444433 22 2367788999998888764421 1 11111122345443
Q ss_pred EEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEE
Q 015502 187 YTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFN 264 (405)
Q Consensus 187 ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD 264 (405)
.|.+.+....-+...-.+..+.||..- .+. ....++. +|.+|+-...+ +.|...|
T Consensus 160 -~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~--gpyGi~atpdGsvwyaslag--------naiarid 216 (353)
T COG4257 160 -NLWFTGQIGAYGRLDPARNVISVFPAP------------QGG--GPYGICATPDGSVWYASLAG--------NAIARID 216 (353)
T ss_pred -cEEEeeccccceecCcccCceeeeccC------------CCC--CCcceEECCCCcEEEEeccc--------cceEEcc
Confidence 444443211111000012344555421 111 1123444 89998875332 5789999
Q ss_pred CCCCcchhhhcccccccCCcccc--CceE-EeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCC
Q 015502 265 LSSRSSHALLIKSFIPVPCALTC--GRLM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGE 341 (405)
Q Consensus 265 ~~~~~w~~~~~~~~~~~p~~~~~--~~l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~ 341 (405)
+.+..= ++++.|..... +.+. ...|++.+..-. ...+..|+....+|.+. .+|..--+
T Consensus 217 p~~~~a------ev~p~P~~~~~gsRriwsdpig~~wittwg--------~g~l~rfdPs~~sW~ey-pLPgs~ar---- 277 (353)
T COG4257 217 PFAGHA------EVVPQPNALKAGSRRIWSDPIGRAWITTWG--------TGSLHRFDPSVTSWIEY-PLPGSKAR---- 277 (353)
T ss_pred cccCCc------ceecCCCcccccccccccCccCcEEEeccC--------CceeeEeCcccccceee-eCCCCCCC----
Confidence 988752 35666765322 2222 334666655321 23456666666678773 34431111
Q ss_pred CCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEccC
Q 015502 342 FDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHK 380 (405)
Q Consensus 342 ~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~ 380 (405)
..-+. +..-+.|++.......+..||+++.+++.++.
T Consensus 278 -pys~r-VD~~grVW~sea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 278 -PYSMR-VDRHGRVWLSEADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred -cceee-eccCCcEEeeccccCceeecCcccceEEEecC
Confidence 01122 33456778865566789999999999999874
No 83
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=79.85 E-value=54 Score=30.75 Aligned_cols=75 Identities=13% Similarity=0.213 Sum_probs=47.3
Q ss_pred CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCC-EEEEEeCCCCeEEEEECCC
Q 015502 294 KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDD-LIYIQSYGAPSLLVYDMNL 372 (405)
Q Consensus 294 ~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~Yd~~~ 372 (405)
+++||+...-.. ........=+||.+|...++.+.+++-.. ...-+++..+++ .+|..+.....+.++|..+
T Consensus 259 g~~lyV~~~~~~-~~thk~~~~~V~ViD~~t~kvi~~i~vG~------~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 259 RDRIYLLADQRA-KWTHKTASRFLFVVDAKTGKRLRKIELGH------EIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred CCEEEEEecCCc-cccccCCCCEEEEEECCCCeEEEEEeCCC------ceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 467777543111 11111223478888888888888876321 112345677888 8888776667899999998
Q ss_pred CcE
Q 015502 373 KQW 375 (405)
Q Consensus 373 ~~w 375 (405)
++-
T Consensus 332 ~k~ 334 (352)
T TIGR02658 332 GKE 334 (352)
T ss_pred CeE
Confidence 854
No 84
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=79.59 E-value=44 Score=29.66 Aligned_cols=197 Identities=11% Similarity=0.026 Sum_probs=90.1
Q ss_pred ecCc-eEEEEeCCCCceEEEEeCcccceee-ccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEE
Q 015502 133 SSYG-LVCFMDNDSRSELYVCNPISKSWKK-LEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHI 210 (405)
Q Consensus 133 s~~G-ll~~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~v 210 (405)
+.+| .++.... ..+.+.+||+.+++... ++.... ...+.+++..+ ++++..+. ...+.+
T Consensus 39 ~~dg~~l~~~~~-~~~~v~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~g~--~l~~~~~~---------~~~l~~ 99 (300)
T TIGR03866 39 SKDGKLLYVCAS-DSDTIQVIDLATGEVIGTLPSGPD-------PELFALHPNGK--ILYIANED---------DNLVTV 99 (300)
T ss_pred CCCCCEEEEEEC-CCCeEEEEECCCCcEEEeccCCCC-------ccEEEECCCCC--EEEEEcCC---------CCeEEE
Confidence 4444 3444332 34779999999887654 332111 12344444432 34443221 126788
Q ss_pred EeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccC
Q 015502 211 YDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCG 288 (405)
Q Consensus 211 y~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~ 288 (405)
||..+..=.. ..... .....+.+ +|.+++.+... ...+..||..+.+-.. .+.... ...
T Consensus 100 ~d~~~~~~~~---~~~~~--~~~~~~~~~~dg~~l~~~~~~-------~~~~~~~d~~~~~~~~-----~~~~~~--~~~ 160 (300)
T TIGR03866 100 IDIETRKVLA---EIPVG--VEPEGMAVSPDGKIVVNTSET-------TNMAHFIDTKTYEIVD-----NVLVDQ--RPR 160 (300)
T ss_pred EECCCCeEEe---EeeCC--CCcceEEECCCCCEEEEEecC-------CCeEEEEeCCCCeEEE-----EEEcCC--Ccc
Confidence 8876543111 00000 00112222 66666655321 1246667876654210 111111 111
Q ss_pred ce-EEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHH--hccCCCCceeEEeeCCCEEEEEeCCCCeE
Q 015502 289 RL-MNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFF--QGFGEFDDVFASSGTDDLIYIQSYGAPSL 365 (405)
Q Consensus 289 ~l-~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 365 (405)
.+ ...+|+.++++... ...+.+|+++..+.. .++..... ..-.....-+++...++.+|+.......+
T Consensus 161 ~~~~s~dg~~l~~~~~~-------~~~v~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 161 FAEFTADGKELWVSSEI-------GGTVSVIDVATRKVI--KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred EEEECCCCCEEEEEcCC-------CCEEEEEEcCcceee--eeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence 22 23456655554321 245889988764322 22211000 00000011133455677878765445679
Q ss_pred EEEECCCCcEE
Q 015502 366 LVYDMNLKQWR 376 (405)
Q Consensus 366 ~~Yd~~~~~w~ 376 (405)
.+||+++++-.
T Consensus 232 ~v~d~~~~~~~ 242 (300)
T TIGR03866 232 AVVDAKTYEVL 242 (300)
T ss_pred EEEECCCCcEE
Confidence 99999876554
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=79.32 E-value=61 Score=31.12 Aligned_cols=173 Identities=19% Similarity=0.219 Sum_probs=93.0
Q ss_pred eCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCC
Q 015502 153 NPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAG 232 (405)
Q Consensus 153 NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~ 232 (405)
+|-++-|.+.-.++..... .....+.+.|. +.|.+++.++ ..+.+|++.+.+=+.. ...+...
T Consensus 8 t~e~~~w~~~~~~~~~ke~-~~vssl~fsp~-~P~d~aVt~S-----------~rvqly~~~~~~~~k~----~srFk~~ 70 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKEH-NSVSSLCFSPK-HPYDFAVTSS-----------VRVQLYSSVTRSVRKT----FSRFKDV 70 (487)
T ss_pred Cccchhhhhhccccccccc-CcceeEecCCC-CCCceEEecc-----------cEEEEEecchhhhhhh----HHhhccc
Confidence 5666677765444332211 12234444442 4455555543 3789999876544331 2233333
Q ss_pred CccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhccccc---ccCCccccCceEEeCCcEEEEEcccccc
Q 015502 233 DESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFI---PVPCALTCGRLMNLKEKLVMVGGIGKQD 307 (405)
Q Consensus 233 ~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~---~~p~~~~~~~l~~~~G~L~~v~~~~~~~ 307 (405)
..++.+ +|.+...|... .-+-.||..+... .+.+ ..|... ......++.+++.+..
T Consensus 71 v~s~~fR~DG~LlaaGD~s--------G~V~vfD~k~r~i-----LR~~~ah~apv~~--~~f~~~d~t~l~s~sD---- 131 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDES--------GHVKVFDMKSRVI-----LRQLYAHQAPVHV--TKFSPQDNTMLVSGSD---- 131 (487)
T ss_pred eeEEEeecCCeEEEccCCc--------CcEEEeccccHHH-----HHHHhhccCceeE--EEecccCCeEEEecCC----
Confidence 334433 79999998654 3689999555321 1111 112111 1122345555555542
Q ss_pred ccCccceEEEEEEeCceeEEEeccChhHHhccCCCCcee--EEeeCCCEEEEEeCCCCeEEEEECCCCc
Q 015502 308 RPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVF--ASSGTDDLIYIQSYGAPSLLVYDMNLKQ 374 (405)
Q Consensus 308 ~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~Yd~~~~~ 374 (405)
-..+.+|++.+.. + +..+... .+.+- ++...++.|++...-++.+-.||.+..+
T Consensus 132 ----d~v~k~~d~s~a~-v-~~~l~~h-------tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~ 187 (487)
T KOG0310|consen 132 ----DKVVKYWDLSTAY-V-QAELSGH-------TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT 187 (487)
T ss_pred ----CceEEEEEcCCcE-E-EEEecCC-------cceeEeeccccCCCeEEEecCCCceEEEEEeccCC
Confidence 2558999999866 2 3333210 01121 2345577788887678899999999884
No 86
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=79.13 E-value=61 Score=31.01 Aligned_cols=138 Identities=20% Similarity=0.232 Sum_probs=69.9
Q ss_pred CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccc
Q 015502 146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEV 225 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~ 225 (405)
.+-+|+||-.|.+...+-++-........ -|.+.++++ | +++.|. .-.+++....|+.|...-. +
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~~~~e--~FeVShd~~-f--ia~~G~---------~G~I~lLhakT~eli~s~K-i 343 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEEKSME--RFEVSHDSN-F--IAIAGN---------NGHIHLLHAKTKELITSFK-I 343 (514)
T ss_pred ceEEEEeeccccccccccCCCCcccchhh--eeEecCCCC-e--EEEccc---------CceEEeehhhhhhhhheee-e
Confidence 46789999999999988765322211112 233333332 3 333332 1268888889999966321 1
Q ss_pred cccccCCCccEE-ECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceE-EeCCcEEEEEcc
Q 015502 226 LTGWRAGDESII-CDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEKLVMVGGI 303 (405)
Q Consensus 226 ~~~~~~~~~~v~-~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~L~~v~~~ 303 (405)
.+... ...+ -+|+..|+.+.. ..+..+|+....-.. +..+--. ...-.++ ..+|.++.++..
T Consensus 344 -eG~v~--~~~fsSdsk~l~~~~~~--------GeV~v~nl~~~~~~~----rf~D~G~-v~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 344 -EGVVS--DFTFSSDSKELLASGGT--------GEVYVWNLRQNSCLH----RFVDDGS-VHGTSLCISLNGSYLATGSD 407 (514)
T ss_pred -ccEEe--eEEEecCCcEEEEEcCC--------ceEEEEecCCcceEE----EEeecCc-cceeeeeecCCCceEEeccC
Confidence 11000 0111 244554544221 379999998875221 1111111 1111232 456775555542
Q ss_pred ccccccCccceEEEEEEeC
Q 015502 304 GKQDRPDIIKGIGIWVLNG 322 (405)
Q Consensus 304 ~~~~~~~~~~~~~vw~l~~ 322 (405)
..-|-||+.+.
T Consensus 408 --------~GiVNIYd~~s 418 (514)
T KOG2055|consen 408 --------SGIVNIYDGNS 418 (514)
T ss_pred --------cceEEEeccch
Confidence 23488887664
No 87
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=78.23 E-value=61 Score=30.50 Aligned_cols=128 Identities=11% Similarity=0.062 Sum_probs=66.7
Q ss_pred cCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeC
Q 015502 134 SYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDS 213 (405)
Q Consensus 134 ~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s 213 (405)
.+|.+++... ...++.+|+.|++..---.... ..... .+. . +|++... .-.+..+|.
T Consensus 240 ~~~~vy~~~~--~g~l~a~d~~tG~~~W~~~~~~-----~~~p~--~~~---~-~vyv~~~----------~G~l~~~d~ 296 (377)
T TIGR03300 240 DGGQVYAVSY--QGRVAALDLRSGRVLWKRDASS-----YQGPA--VDD---N-RLYVTDA----------DGVVVALDR 296 (377)
T ss_pred ECCEEEEEEc--CCEEEEEECCCCcEEEeeccCC-----ccCce--EeC---C-EEEEECC----------CCeEEEEEC
Confidence 3677776554 3678889998875332111110 11111 111 1 4554331 125667776
Q ss_pred CCC--CcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceE
Q 015502 214 DTM--MWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM 291 (405)
Q Consensus 214 ~~~--~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~ 291 (405)
.++ .|+.... . ......++..++.+|..... ..+.++|..+.+-. ...+.+........+
T Consensus 297 ~tG~~~W~~~~~--~--~~~~ssp~i~g~~l~~~~~~---------G~l~~~d~~tG~~~-----~~~~~~~~~~~~sp~ 358 (377)
T TIGR03300 297 RSGSELWKNDEL--K--YRQLTAPAVVGGYLVVGDFE---------GYLHWLSREDGSFV-----ARLKTDGSGIASPPV 358 (377)
T ss_pred CCCcEEEccccc--c--CCccccCEEECCEEEEEeCC---------CEEEEEECCCCCEE-----EEEEcCCCccccCCE
Confidence 544 5865221 1 11223456788999987643 37999998776521 012333222233456
Q ss_pred EeCCcEEEEEc
Q 015502 292 NLKEKLVMVGG 302 (405)
Q Consensus 292 ~~~G~L~~v~~ 302 (405)
..+++||+.+.
T Consensus 359 ~~~~~l~v~~~ 369 (377)
T TIGR03300 359 VVGDGLLVQTR 369 (377)
T ss_pred EECCEEEEEeC
Confidence 77888887765
No 88
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=77.92 E-value=33 Score=32.10 Aligned_cols=112 Identities=7% Similarity=0.048 Sum_probs=64.3
Q ss_pred cEEEEEECCCCcchhhhcccccccCCccccCceEEeCC-cEEEEEccc-cccccCccceEEEEEEeCceeEEEeccChh-
Q 015502 258 HGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKE-KLVMVGGIG-KQDRPDIIKGIGIWVLNGKEWQEVARMPHK- 334 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G-~L~~v~~~~-~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~- 334 (405)
..+..+|..+.+-. ..+ |.......++.-+| .||++.... .-.+......++||+....+=+.--.+|..
T Consensus 27 ~~v~ViD~~~~~v~-----g~i--~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVL-----GMT--DGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEEE-----EEE--EccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 47899999887632 112 22222222444455 667665521 111122467799998776543322222221
Q ss_pred HHhccCCCCceeEEeeCCCEEEEEeCC-CCeEEEEECCCCcEEE
Q 015502 335 FFQGFGEFDDVFASSGTDDLIYIQSYG-APSLLVYDMNLKQWRW 377 (405)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~Yd~~~~~w~~ 377 (405)
.+. .+.....+++..+|+.+|+.+.. ...+-++|+++++.-.
T Consensus 100 ~~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 100 RFL-VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred hhh-ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence 111 12233467778899999998744 6799999999998765
No 89
>PTZ00420 coronin; Provisional
Probab=76.41 E-value=90 Score=31.47 Aligned_cols=46 Identities=24% Similarity=0.365 Sum_probs=31.2
Q ss_pred eCCCEEEEEeCCCCeEEEEECCCCcEEEccCCCCCCCCcccceeeeeecee
Q 015502 350 GTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPR 400 (405)
Q Consensus 350 ~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~~p~~~~~~~~~~~~~~~~p~ 400 (405)
...+.+|+...++..+.+|++.++....+.... .. .-..|++|-|.
T Consensus 272 ~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~--s~---~p~~g~~f~Pk 317 (568)
T PTZ00420 272 ESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK--SC---SPFRSFGFLPK 317 (568)
T ss_pred CCCCCEEEEEECCCeEEEEEccCCcEEeecccc--cC---CCccceEEccc
Confidence 345677887777889999999888666654322 11 22458888885
No 90
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=74.12 E-value=3.2 Score=37.83 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=34.5
Q ss_pred ccCCCCCHHHHHHHHhcCCh--------hhhHHHhhcchhhHhhhcCh
Q 015502 40 SVDLILPDDLLERILAYLPI--------ASIFRAGCVCRRWHEIVSSR 79 (405)
Q Consensus 40 ~~~~~LP~dll~~Il~~Lp~--------~~l~r~r~VcK~W~~~i~~~ 79 (405)
+.|+.||.++|.+|+.++.. ++.+.+..|||.|+.+..+.
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~ 90 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEI 90 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcccc
Confidence 68999999999999999862 36789999999999987654
No 91
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=73.21 E-value=24 Score=32.02 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=47.4
Q ss_pred eCCcEEEEEcccccccc----CccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEee-----CCCEEEEEeCCCC
Q 015502 293 LKEKLVMVGGIGKQDRP----DIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSG-----TDDLIYIQSYGAP 363 (405)
Q Consensus 293 ~~G~L~~v~~~~~~~~~----~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~ 363 (405)
..|+|.++..-...... ....++-+|+|..++=.+...+|......- ..-.-+.+.. .+..+||......
T Consensus 10 ~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~-s~lndl~VD~~~~~~~~~~aYItD~~~~ 88 (287)
T PF03022_consen 10 ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPD-SFLNDLVVDVRDGNCDDGFAYITDSGGP 88 (287)
T ss_dssp TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TC-GGEEEEEEECTTTTS-SEEEEEEETTTC
T ss_pred CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccc-cccceEEEEccCCCCcceEEEEeCCCcC
Confidence 35677777532110001 123578888888887667777775443200 0001122322 1268999887777
Q ss_pred eEEEEECCCC-cEEEccCC
Q 015502 364 SLLVYDMNLK-QWRWSHKC 381 (405)
Q Consensus 364 ~~~~Yd~~~~-~w~~l~~~ 381 (405)
.++|||+.++ .|+.+...
T Consensus 89 glIV~dl~~~~s~Rv~~~~ 107 (287)
T PF03022_consen 89 GLIVYDLATGKSWRVLHNS 107 (287)
T ss_dssp EEEEEETTTTEEEEEETCG
T ss_pred cEEEEEccCCcEEEEecCC
Confidence 9999999996 55555553
No 92
>PLN02772 guanylate kinase
Probab=71.68 E-value=11 Score=35.54 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=39.5
Q ss_pred EEEEEeeeccCCCccccceEEEEEeCCCCCcccccc-cccccccCCCccEEE-CcEEEeeEE
Q 015502 188 TVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWK-EVLTGWRAGDESIIC-DGVLYFLIY 247 (405)
Q Consensus 188 kv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~-~~~~~~~~~~~~v~~-~g~iy~l~~ 247 (405)
|+|++|+....+. .-..+++||..++.|..... ..++..+.+++++++ ++.|+++.+
T Consensus 36 k~yv~GG~~d~~~---~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~ 94 (398)
T PLN02772 36 KTYVIGGNHEGNT---LSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKK 94 (398)
T ss_pred EEEEEcccCCCcc---ccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeC
Confidence 8999987543211 13479999999999988641 223344567777777 789999974
No 93
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=70.67 E-value=46 Score=33.25 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=65.7
Q ss_pred cEEEEEECCCCcchhhhcccccccCCc-cccCceEEeCCcEEEEEccccccccCccceEEEEEEeCc----eeEEEecc-
Q 015502 258 HGLISFNLSSRSSHALLIKSFIPVPCA-LTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGK----EWQEVARM- 331 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~-~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~----~W~~v~~i- 331 (405)
..+.+|++....-. ....+-|.. +...-+.+|+|++.++.++++. ...-+.+|+-+.- --+.+-.+
T Consensus 742 g~~rVy~Prs~e~p----v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~----SeRQv~~Y~Aq~l~~~pl~t~~lDva 813 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQP----VYEGKGPVGTRGARILWACDGRIVIVVGFDKS----SERQVQMYDAQTLDLRPLYTQVLDVA 813 (1012)
T ss_pred ceEEEeCCCCCCCc----cccCCCCccCcceeEEEEecCcEEEEeccccc----chhhhhhhhhhhccCCcceeeeeccc
Confidence 37889999776521 011222322 1233466899999999887543 2244667765531 11221111
Q ss_pred ChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEccCCCCCCCCcccceeeeeeceecc
Q 015502 332 PHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLE 402 (405)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~~p~~~~~~~~~~~~~~~~p~~~ 402 (405)
|..+. .-...+.+++|+...++..+++|.+--.+=..+|..+..- ..-..|++|.+.++
T Consensus 814 ps~Lv---------P~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~s---p~~hqGl~fl~K~~ 872 (1012)
T KOG1445|consen 814 PSPLV---------PHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMS---PVGHQGLAFLQKLK 872 (1012)
T ss_pred Ccccc---------ccccCCCceEEEecCCCceEEEEEecCCCceeeecccccC---CCcccceeeecccc
Confidence 11111 1123356777887777778888877655444444322211 22245788877653
No 94
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=70.19 E-value=42 Score=33.46 Aligned_cols=113 Identities=11% Similarity=0.125 Sum_probs=61.1
Q ss_pred CccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--chhhhcccccccCCc--------cccCceEEeCCcEEEEEc
Q 015502 233 DESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SHALLIKSFIPVPCA--------LTCGRLMNLKEKLVMVGG 302 (405)
Q Consensus 233 ~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~--------~~~~~l~~~~G~L~~v~~ 302 (405)
..+++.+|.+|+.... ..|.++|..+.+ |+. . ...+.. .....++..+|+||+.+.
T Consensus 63 stPvv~~g~vyv~s~~---------g~v~AlDa~TGk~lW~~----~-~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~ 128 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY---------SRVYALDAKTGKELWKY----D-PKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL 128 (527)
T ss_pred cCCEEECCEEEEECCC---------CcEEEEECCCCceeeEe----c-CCCCcccccccccccccccceEECCEEEEEcC
Confidence 3578889999997532 369999998754 642 1 111111 112345677888887553
Q ss_pred cccccccCccceEEEEEEe--C--ceeEEEec-cChhHHhccCCCCceeEEeeCCCEEEEEeC-----CCCeEEEEECCC
Q 015502 303 IGKQDRPDIIKGIGIWVLN--G--KEWQEVAR-MPHKFFQGFGEFDDVFASSGTDDLIYIQSY-----GAPSLLVYDMNL 372 (405)
Q Consensus 303 ~~~~~~~~~~~~~~vw~l~--~--~~W~~v~~-i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~Yd~~~ 372 (405)
. -.++.|+ + ..|+.-.. ... .+...... ...++.||+... ....++.||.++
T Consensus 129 d-----------g~l~ALDa~TGk~~W~~~~~~~~~----~~~~tssP---~v~~g~Vivg~~~~~~~~~G~v~AlD~~T 190 (527)
T TIGR03075 129 D-----------ARLVALDAKTGKVVWSKKNGDYKA----GYTITAAP---LVVKGKVITGISGGEFGVRGYVTAYDAKT 190 (527)
T ss_pred C-----------CEEEEEECCCCCEEeecccccccc----cccccCCc---EEECCEEEEeecccccCCCcEEEEEECCC
Confidence 1 2345555 2 35765321 110 00000011 113567777532 146899999999
Q ss_pred CcEEE
Q 015502 373 KQWRW 377 (405)
Q Consensus 373 ~~w~~ 377 (405)
++-.+
T Consensus 191 G~~lW 195 (527)
T TIGR03075 191 GKLVW 195 (527)
T ss_pred CceeE
Confidence 95444
No 95
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=70.08 E-value=79 Score=28.00 Aligned_cols=55 Identities=5% Similarity=-0.030 Sum_probs=33.1
Q ss_pred ceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcE
Q 015502 313 KGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQW 375 (405)
Q Consensus 313 ~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w 375 (405)
.++.+|++++ ++.+..+... .....+++...|+.||+.......+.+||+++++-
T Consensus 229 ~~i~v~d~~~--~~~~~~~~~~------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 229 NRVAVVDAKT--YEVLDYLLVG------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CeEEEEECCC--CcEEEEEEeC------CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 3588887754 4443322110 00112345567888887655567899999999764
No 96
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=68.84 E-value=1.1e+02 Score=29.32 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=53.6
Q ss_pred cEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHh
Q 015502 258 HGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQ 337 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~ 337 (405)
..+++||+.+.+.+++.++...+ .......-+...+...++.|.. ..+.+-....++|..-..|+-...
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e--~~~~e~FeVShd~~fia~~G~~--------G~I~lLhakT~eli~s~KieG~v~- 348 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVE--EKSMERFEVSHDSNFIAIAGNN--------GHIHLLHAKTKELITSFKIEGVVS- 348 (514)
T ss_pred eEEEEeeccccccccccCCCCcc--cchhheeEecCCCCeEEEcccC--------ceEEeehhhhhhhhheeeeccEEe-
Confidence 58999999999977543221111 1111122344455555555432 235555556677765555543211
Q ss_pred ccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCC
Q 015502 338 GFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLK 373 (405)
Q Consensus 338 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~ 373 (405)
-+.+..++..|++.. ....|+++|++++
T Consensus 349 -------~~~fsSdsk~l~~~~-~~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 349 -------DFTFSSDSKELLASG-GTGEVYVWNLRQN 376 (514)
T ss_pred -------eEEEecCCcEEEEEc-CCceEEEEecCCc
Confidence 122334566677664 4568999999988
No 97
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=67.59 E-value=65 Score=30.65 Aligned_cols=64 Identities=27% Similarity=0.471 Sum_probs=40.5
Q ss_pred cEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEE
Q 015502 240 GVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWV 319 (405)
Q Consensus 240 g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~ 319 (405)
+.+|+.-.. ......++.||+-+.+ +..|. ..+++...-+|+|+++...+ ........++||.
T Consensus 320 DvLYvF~~~-----~~g~~~Ll~YN~I~k~---------v~tPi-~chG~alf~DG~l~~fra~~--~EptrvHp~QiWq 382 (448)
T PF12458_consen 320 DVLYVFYAR-----EEGRYLLLPYNLIRKE---------VATPI-ICHGYALFEDGRLVYFRAEG--DEPTRVHPMQIWQ 382 (448)
T ss_pred eEEEEEEEC-----CCCcEEEEechhhhhh---------hcCCe-eccceeEecCCEEEEEecCC--CCcceeccceeec
Confidence 467887643 2345789999998777 33343 22455666789999987641 1122356788885
Q ss_pred E
Q 015502 320 L 320 (405)
Q Consensus 320 l 320 (405)
-
T Consensus 383 T 383 (448)
T PF12458_consen 383 T 383 (448)
T ss_pred C
Confidence 3
No 98
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=67.10 E-value=17 Score=27.29 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=31.6
Q ss_pred ceEEEEeCccc-ceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEee
Q 015502 147 SELYVCNPISK-SWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKS 194 (405)
Q Consensus 147 ~~~~v~NP~T~-~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~ 194 (405)
-.++++||.|+ .|.+..+. ...+.+-+|+..+.|+|+.+.+
T Consensus 11 A~V~~yd~~tKk~WvPs~~~-------~~~V~~y~~~~~ntfRIi~~~~ 52 (111)
T cd01206 11 AHVFQIDPKTKKNWIPASKH-------AVTVSYFYDSTRNVYRIISVGG 52 (111)
T ss_pred eEEEEECCCCcceeEeCCCC-------ceeEEEEecCCCcEEEEEEecC
Confidence 57899999986 99876531 2357788889899999998764
No 99
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=66.83 E-value=1.1e+02 Score=28.21 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=55.2
Q ss_pred cEEEEEECCCCc-chhhhcccccccCCccccCceEE-eCCc-EEEEEccccccccCccceEEEEEEeC--ceeEEEec--
Q 015502 258 HGLISFNLSSRS-SHALLIKSFIPVPCALTCGRLMN-LKEK-LVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQEVAR-- 330 (405)
Q Consensus 258 ~~i~~fD~~~~~-w~~~~~~~~~~~p~~~~~~~l~~-~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~v~~-- 330 (405)
..|..||+.+.. .... ....+..|.......++. -+|+ ||++... ...+.+|+++. ++.+.+..
T Consensus 148 ~~v~v~d~~~~g~l~~~-~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~--------~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQ-EPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL--------NSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred CEEEEEEECCCCccccc-CCCceecCCCCCCceEEECCCCCEEEEEecC--------CCEEEEEEEeCCCCCEEEEEEEe
Confidence 579999987632 1100 000112222222223433 3454 5555431 35699999984 45544433
Q ss_pred -cChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCC--CcEEEcc
Q 015502 331 -MPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNL--KQWRWSH 379 (405)
Q Consensus 331 -i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~--~~w~~l~ 379 (405)
+|...... . ...-+.+...|+.+|+.......+.+|+.++ +.++.+.
T Consensus 219 ~~p~~~~~~-~-~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~ 268 (330)
T PRK11028 219 MMPADFSDT-R-WAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG 268 (330)
T ss_pred cCCCcCCCC-c-cceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE
Confidence 33321100 0 0011334567888999765567888888754 3454444
No 100
>PTZ00421 coronin; Provisional
Probab=66.02 E-value=1.4e+02 Score=29.48 Aligned_cols=48 Identities=17% Similarity=0.472 Sum_probs=30.9
Q ss_pred eeCCCEEEEEeCCCCeEEEEECCCCcEEEccCCCCCCCCcccceeeeeeceec
Q 015502 349 SGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRL 401 (405)
Q Consensus 349 ~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~~p~~~~~~~~~~~~~~~~p~~ 401 (405)
...++.+|+....+..+.+||+.+++....-. +.. ..-..|++|.|..
T Consensus 268 d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~--~~s---~~~~~g~~~~pk~ 315 (493)
T PTZ00421 268 DEDTNLLYIGSKGEGNIRCFELMNERLTFCSS--YSS---VEPHKGLCMMPKW 315 (493)
T ss_pred cCCCCEEEEEEeCCCeEEEEEeeCCceEEEee--ccC---CCCCcceEecccc
Confidence 34677777766557789999999987654421 111 1224588888764
No 101
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=65.12 E-value=1.1e+02 Score=27.92 Aligned_cols=226 Identities=13% Similarity=0.065 Sum_probs=108.2
Q ss_pred ceEEEEeCCCCceEEEEeCcccceee-ccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCC
Q 015502 136 GLVCFMDNDSRSELYVCNPISKSWKK-LEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSD 214 (405)
Q Consensus 136 Gll~~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~ 214 (405)
+.++..........+++|+.+++-.. +.+++.. ..+....|..|+. .+|..... ... .+=.+-|||..
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~----~LytTEnd-~~~----g~G~IgVyd~~ 85 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGR----LLYTTEND-YET----GRGVIGVYDAA 85 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCC----EEEEeccc-cCC----CcEEEEEEECc
Confidence 33333333334668899999998764 5444322 2233345544442 45544321 111 13368899986
Q ss_pred CCCcccccccccccccCCCcc---------EEECcEEEeeEEe--cCCCCCCCccEEEEEECCCCcchhhhcccccccCC
Q 015502 215 TMMWVTSWKEVLTGWRAGDES---------IICDGVLYFLIYA--TGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPC 283 (405)
Q Consensus 215 ~~~W~~~~~~~~~~~~~~~~~---------v~~~g~iy~l~~~--~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~ 283 (405)
+..+.+. +.+..-...+.. ++.||=|.---.. .+.+....+..|.-.|..+.+-- ....+|.
T Consensus 86 -~~~~ri~-E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll-----~q~~Lp~ 158 (305)
T PF07433_consen 86 -RGYRRIG-EFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALL-----EQVELPP 158 (305)
T ss_pred -CCcEEEe-EecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCcee-----eeeecCc
Confidence 3333322 111111111222 2223333222111 01122233445666777766521 1223443
Q ss_pred cc---ccCceEEeC-CcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEe
Q 015502 284 AL---TCGRLMNLK-EKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQS 359 (405)
Q Consensus 284 ~~---~~~~l~~~~-G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 359 (405)
.. ..++|.... |.+.+...+..... ....-+-+++.++. .....+|.+....+..+-..+++...++.|.+.+
T Consensus 159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~-~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts 235 (305)
T PF07433_consen 159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPG-DAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS 235 (305)
T ss_pred cccccceeeEEecCCCcEEEEEecCCCCC-ccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC
Confidence 22 345565544 56665555433211 11222333333322 3445566554444433223345556777888876
Q ss_pred CCCCeEEEEECCCCcEEEccCCC
Q 015502 360 YGAPSLLVYDMNLKQWRWSHKCP 382 (405)
Q Consensus 360 ~~~~~~~~Yd~~~~~w~~l~~~p 382 (405)
-.-..+.+||..+++|.....++
T Consensus 236 PrGg~~~~~d~~tg~~~~~~~l~ 258 (305)
T PF07433_consen 236 PRGGRVAVWDAATGRLLGSVPLP 258 (305)
T ss_pred CCCCEEEEEECCCCCEeeccccC
Confidence 45578999999999997765544
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=64.35 E-value=1.4e+02 Score=28.61 Aligned_cols=122 Identities=9% Similarity=0.080 Sum_probs=66.6
Q ss_pred ccEEE-CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccC-ceEEeCCcEEEEEccccccccCc
Q 015502 234 ESIIC-DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCG-RLMNLKEKLVMVGGIGKQDRPDI 311 (405)
Q Consensus 234 ~~v~~-~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~-~l~~~~G~L~~v~~~~~~~~~~~ 311 (405)
.++++ +|.|+..+.. ...+-.||+.+.. . ...+|...... .+.-.++.-|++...+
T Consensus 352 s~~fHpDgLifgtgt~--------d~~vkiwdlks~~-~------~a~Fpght~~vk~i~FsENGY~Lat~ad------- 409 (506)
T KOG0289|consen 352 SAAFHPDGLIFGTGTP--------DGVVKIWDLKSQT-N------VAKFPGHTGPVKAISFSENGYWLATAAD------- 409 (506)
T ss_pred EeeEcCCceEEeccCC--------CceEEEEEcCCcc-c------cccCCCCCCceeEEEeccCceEEEEEec-------
Confidence 44555 8888877643 2478899998776 2 35666533322 2334444555555432
Q ss_pred cceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEccCCCCC
Q 015502 312 IKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVT 384 (405)
Q Consensus 312 ~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~~p~~ 384 (405)
-..+.+|+|.+.+=-+-..++... +. .-+.+...|..+-+. ..+-.++.|+-.+++|+++...+..
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~~~----~v--~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k~W~~~~~~~~~ 475 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDEKK----EV--NSLSFDQSGTYLGIA-GSDLQVYICKKKTKSWTEIKELADH 475 (506)
T ss_pred CCeEEEEEehhhcccceeeccccc----cc--eeEEEcCCCCeEEee-cceeEEEEEecccccceeeehhhhc
Confidence 134999999875422222233211 00 011122223333332 3445677888899999998766543
No 103
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.31 E-value=93 Score=26.71 Aligned_cols=159 Identities=12% Similarity=0.128 Sum_probs=82.0
Q ss_pred ceEEEEEeCCCCC--cccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccC
Q 015502 205 ELSIHIYDSDTMM--WVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVP 282 (405)
Q Consensus 205 ~~~~~vy~s~~~~--W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p 282 (405)
...+.+++..+++ |+.. +.+....+...+..++.+|.+.... ...+.||..+-+- .-..+
T Consensus 67 ~S~ir~~~L~~gq~~~s~~---l~~~~~FgEGit~~gd~~y~LTw~e--------gvaf~~d~~t~~~-------lg~~~ 128 (262)
T COG3823 67 FSKIRVSDLTTGQEIFSEK---LAPDTVFGEGITKLGDYFYQLTWKE--------GVAFKYDADTLEE-------LGRFS 128 (262)
T ss_pred cceeEEEeccCceEEEEee---cCCccccccceeeccceEEEEEecc--------ceeEEEChHHhhh-------hcccc
Confidence 3478888887554 4442 2212233456678899999999765 3678888876551 22333
Q ss_pred CccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEe-------ccChhHHhccCCCCceeEEeeCCCEE
Q 015502 283 CALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVA-------RMPHKFFQGFGEFDDVFASSGTDDLI 355 (405)
Q Consensus 283 ~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~-------~i~~~~~~~~~~~~~~~~~~~~~~~i 355 (405)
.......|..-+..|.|-.+. .++.. .|.+...+.. ..|-...+. .--.++.+
T Consensus 129 y~GeGWgLt~d~~~LimsdGs---------atL~f--rdP~tfa~~~~v~VT~~g~pv~~LNE---------LE~VdG~l 188 (262)
T COG3823 129 YEGEGWGLTSDDKNLIMSDGS---------ATLQF--RDPKTFAELDTVQVTDDGVPVSKLNE---------LEWVDGEL 188 (262)
T ss_pred cCCcceeeecCCcceEeeCCc---------eEEEe--cCHHHhhhcceEEEEECCeecccccc---------eeeeccEE
Confidence 333334455444455554442 11111 1221111111 111111111 11134455
Q ss_pred EEEeCCCCeEEEEECCCCc---EEEccCCCCC---CCCcccceeeeeeceec
Q 015502 356 YIQSYGAPSLLVYDMNLKQ---WRWSHKCPVT---KRFPLQLFTGFCFEPRL 401 (405)
Q Consensus 356 ~~~~~~~~~~~~Yd~~~~~---w~~l~~~p~~---~~~~~~~~~~~~~~p~~ 401 (405)
|..--.+..+...|+++++ |-.+.+.+.. .....+.++|++|.|.-
T Consensus 189 yANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~ 240 (262)
T COG3823 189 YANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQ 240 (262)
T ss_pred EEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcC
Confidence 5543234578888888884 5455554432 22346788999998853
No 104
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=63.30 E-value=9.9 Score=22.51 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=17.2
Q ss_pred ccEEECcEEEeeEEecCCCCCCCccEEEEEECCC
Q 015502 234 ESIICDGVLYFLIYATGGGAPENRHGLISFNLSS 267 (405)
Q Consensus 234 ~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~ 267 (405)
.+++.+|.+|+-+.. ..+.+||.++
T Consensus 16 ~~~v~~g~vyv~~~d---------g~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGD---------GNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TT---------SEEEEEETT-
T ss_pred CCEEECCEEEEEcCC---------CEEEEEeCCC
Confidence 457779999998743 4899999875
No 105
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=62.83 E-value=73 Score=29.25 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=47.2
Q ss_pred ceEEeCCcEEEEEccccccccCccceEEEEEEeCce-eEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC-CCCeEE
Q 015502 289 RLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKE-WQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY-GAPSLL 366 (405)
Q Consensus 289 ~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~-W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~ 366 (405)
.+...+|+|.+..+ ..+.+|+++..+ +..++.+.... .+..+...++.|++... ..-.++
T Consensus 93 ai~~~~~~lv~~~g----------~~l~v~~l~~~~~l~~~~~~~~~~--------~i~sl~~~~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 93 AICSFNGRLVVAVG----------NKLYVYDLDNSKTLLKKAFYDSPF--------YITSLSVFKNYILVGDAMKSVSLL 154 (321)
T ss_dssp EEEEETTEEEEEET----------TEEEEEEEETTSSEEEEEEE-BSS--------SEEEEEEETTEEEEEESSSSEEEE
T ss_pred EhhhhCCEEEEeec----------CEEEEEEccCcccchhhheecceE--------EEEEEeccccEEEEEEcccCEEEE
Confidence 35677888665554 459999999877 88887765432 23344455777777542 223455
Q ss_pred EEECCCCcEEEccCC
Q 015502 367 VYDMNLKQWRWSHKC 381 (405)
Q Consensus 367 ~Yd~~~~~w~~l~~~ 381 (405)
.|+.+.++...+...
T Consensus 155 ~~~~~~~~l~~va~d 169 (321)
T PF03178_consen 155 RYDEENNKLILVARD 169 (321)
T ss_dssp EEETTTE-EEEEEEE
T ss_pred EEEccCCEEEEEEec
Confidence 667767777777653
No 106
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=62.15 E-value=1.1e+02 Score=27.77 Aligned_cols=113 Identities=14% Similarity=0.211 Sum_probs=59.3
Q ss_pred ceEEEEEeCCCCCcccccccccccccCCCccE-EE-CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccC
Q 015502 205 ELSIHIYDSDTMMWVTSWKEVLTGWRAGDESI-IC-DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVP 282 (405)
Q Consensus 205 ~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v-~~-~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p 282 (405)
-..+.+||....+|......+ .+ ....+ .. +..+|+-|...- .......+..||..+.+|+.+..-.--..|
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i-~G---~V~~l~~~~~~~Llv~G~ft~--~~~~~~~la~yd~~~~~w~~~~~~~s~~ip 88 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGI-SG---TVTDLQWASNNQLLVGGNFTL--NGTNSSNLATYDFKNQTWSSLGGGSSNSIP 88 (281)
T ss_pred CCEEEEEECCCCEeecCCCCc-eE---EEEEEEEecCCEEEEEEeeEE--CCCCceeEEEEecCCCeeeecCCcccccCC
Confidence 357899999999998875431 11 11112 23 556666553220 111356899999999999743110000122
Q ss_pred CccccCceEEeCC-cEEEEEccccccccCccceEEEEEEeCceeEEEec
Q 015502 283 CALTCGRLMNLKE-KLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVAR 330 (405)
Q Consensus 283 ~~~~~~~l~~~~G-~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~ 330 (405)
.......+...++ ++++.+... ...-.+...+..+|..+..
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~~-------~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRSA-------NGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred CcEEEEEeeccCCceEEEeceec-------CCCceEEEEcCCceEeccc
Confidence 2221111222233 566555431 1123444448889988766
No 107
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=62.15 E-value=23 Score=26.91 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=30.5
Q ss_pred ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEe
Q 015502 147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVK 193 (405)
Q Consensus 147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~ 193 (405)
-.+.++||.|+.|.++.+.+ .....+.+..++..+.|+|+...
T Consensus 9 A~Vm~~d~~tk~W~P~~~~~----~~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 9 ASVMVYDDSNKKWVPAGGGS----QGFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EEeeEEcCCCCcEEcCCCCC----CCcceEEEEEcCCCCEEEEEEee
Confidence 56889999999998764421 12345677777888888888643
No 108
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=61.40 E-value=1.3e+02 Score=31.57 Aligned_cols=31 Identities=10% Similarity=0.181 Sum_probs=23.6
Q ss_pred CCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--ch
Q 015502 232 GDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SH 271 (405)
Q Consensus 232 ~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~ 271 (405)
...+++++|++|+.... ..++++|..|.+ |+
T Consensus 187 e~TPlvvgg~lYv~t~~---------~~V~ALDa~TGk~lW~ 219 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPH---------NKVIALDAATGKEKWK 219 (764)
T ss_pred ccCCEEECCEEEEECCC---------CeEEEEECCCCcEEEE
Confidence 34689999999998643 479999988654 54
No 109
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=58.50 E-value=9.6 Score=28.08 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.6
Q ss_pred ccCCCCCHHHHHHHHhcCChhhhHH
Q 015502 40 SVDLILPDDLLERILAYLPIASIFR 64 (405)
Q Consensus 40 ~~~~~LP~dll~~Il~~Lp~~~l~r 64 (405)
..|..||.|+-..||..|+-.||..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5799999999999999999988864
No 110
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=57.60 E-value=1.6e+02 Score=27.11 Aligned_cols=49 Identities=14% Similarity=0.321 Sum_probs=31.5
Q ss_pred CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEE
Q 015502 239 DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVG 301 (405)
Q Consensus 239 ~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~ 301 (405)
.+.+||..-.. ..|..||+.+..- +....|.......+...+|.|..+.
T Consensus 36 ~~~L~w~DI~~--------~~i~r~~~~~g~~------~~~~~p~~~~~~~~~d~~g~Lv~~~ 84 (307)
T COG3386 36 RGALLWVDILG--------GRIHRLDPETGKK------RVFPSPGGFSSGALIDAGGRLIACE 84 (307)
T ss_pred CCEEEEEeCCC--------CeEEEecCCcCce------EEEECCCCcccceeecCCCeEEEEc
Confidence 35578886443 5899999987652 2456676655555555556666554
No 111
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=56.98 E-value=3.1e+02 Score=30.29 Aligned_cols=74 Identities=9% Similarity=0.023 Sum_probs=44.4
Q ss_pred EeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHh-------ccCCCCceeEEeeCCCEEEEEeCCCCe
Q 015502 292 NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQ-------GFGEFDDVFASSGTDDLIYIQSYGAPS 364 (405)
Q Consensus 292 ~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~~~ 364 (405)
..+|.||++... ..++.+|+++......+......-+. .+. ...-+++...| .+|+.......
T Consensus 812 d~dG~LYVADs~--------N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~-~P~GIavd~dG-~lyVaDt~Nn~ 881 (1057)
T PLN02919 812 AKDGQIYVADSY--------NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLS-EPAGLALGENG-RLFVADTNNSL 881 (1057)
T ss_pred eCCCcEEEEECC--------CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccC-CceEEEEeCCC-CEEEEECCCCE
Confidence 456889888753 35699998887666554432210000 110 11223333344 68888777789
Q ss_pred EEEEECCCCcE
Q 015502 365 LLVYDMNLKQW 375 (405)
Q Consensus 365 ~~~Yd~~~~~w 375 (405)
+.++|+++++-
T Consensus 882 Irvid~~~~~~ 892 (1057)
T PLN02919 882 IRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCCCcc
Confidence 99999999865
No 112
>PF13013 F-box-like_2: F-box-like domain
Probab=56.68 E-value=15 Score=27.77 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHhcCChhhhHHHhhcch
Q 015502 44 ILPDDLLERILAYLPIASIFRAGCVCR 70 (405)
Q Consensus 44 ~LP~dll~~Il~~Lp~~~l~r~r~VcK 70 (405)
+||+||++.|+....-.++...-..|+
T Consensus 24 DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 24 DLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 799999999999999877766666665
No 113
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=56.13 E-value=2.5e+02 Score=29.03 Aligned_cols=209 Identities=13% Similarity=0.135 Sum_probs=107.6
Q ss_pred EEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEE
Q 015502 131 IASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHI 210 (405)
Q Consensus 131 ~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~v 210 (405)
+.+.+.||-+.+. .-.++.||+-.+...+.-..- .......+.|.|++ .+++.|+. .-.+.|
T Consensus 315 ~N~tGDWiA~g~~-klgQLlVweWqsEsYVlKQQg-----H~~~i~~l~YSpDg---q~iaTG~e---------DgKVKv 376 (893)
T KOG0291|consen 315 FNSTGDWIAFGCS-KLGQLLVWEWQSESYVLKQQG-----HSDRITSLAYSPDG---QLIATGAE---------DGKVKV 376 (893)
T ss_pred ecccCCEEEEcCC-ccceEEEEEeeccceeeeccc-----cccceeeEEECCCC---cEEEeccC---------CCcEEE
Confidence 3444666655433 246899999888777643321 11223566666654 45665542 127888
Q ss_pred EeCCCCCcccccccccccccCCCccEEE--Cc-EEEeeEEecCCCCCCCccEEEEEECCCCc-chhhhcccccccCCccc
Q 015502 211 YDSDTMMWVTSWKEVLTGWRAGDESIIC--DG-VLYFLIYATGGGAPENRHGLISFNLSSRS-SHALLIKSFIPVPCALT 286 (405)
Q Consensus 211 y~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g-~iy~l~~~~~~~~~~~~~~i~~fD~~~~~-w~~~~~~~~~~~p~~~~ 286 (405)
|+..++--...- ........++.+ .| .+....-. ..+-++|+.+-+ +. ....|....
T Consensus 377 Wn~~SgfC~vTF----teHts~Vt~v~f~~~g~~llssSLD---------GtVRAwDlkRYrNfR------Tft~P~p~Q 437 (893)
T KOG0291|consen 377 WNTQSGFCFVTF----TEHTSGVTAVQFTARGNVLLSSSLD---------GTVRAWDLKRYRNFR------TFTSPEPIQ 437 (893)
T ss_pred EeccCceEEEEe----ccCCCceEEEEEEecCCEEEEeecC---------CeEEeeeecccceee------eecCCCcee
Confidence 887554332210 111122233322 33 33333322 379999997643 32 334455444
Q ss_pred cCceEE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeE--EeeCCCEEEEEeCCCC
Q 015502 287 CGRLMN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFA--SSGTDDLIYIQSYGAP 363 (405)
Q Consensus 287 ~~~l~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~ 363 (405)
...+++ ..|.|.+++..+ .-.+.||.++.+.-..+-+ +- ...+.+ +...+..++-. .+++
T Consensus 438 fscvavD~sGelV~AG~~d-------~F~IfvWS~qTGqllDiLs-------GH--EgPVs~l~f~~~~~~LaS~-SWDk 500 (893)
T KOG0291|consen 438 FSCVAVDPSGELVCAGAQD-------SFEIFVWSVQTGQLLDILS-------GH--EGPVSGLSFSPDGSLLASG-SWDK 500 (893)
T ss_pred eeEEEEcCCCCEEEeeccc-------eEEEEEEEeecCeeeehhc-------CC--CCcceeeEEccccCeEEec-cccc
Confidence 444433 458998888743 3458888888765433211 00 012222 34566655554 3677
Q ss_pred eEEEEECCCCcEEEccCCCCCCCCcccceeeeeece
Q 015502 364 SLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEP 399 (405)
Q Consensus 364 ~~~~Yd~~~~~w~~l~~~p~~~~~~~~~~~~~~~~p 399 (405)
.+..+|.=.. |..++..+..++ ..++.|.|
T Consensus 501 TVRiW~if~s-~~~vEtl~i~sd-----vl~vsfrP 530 (893)
T KOG0291|consen 501 TVRIWDIFSS-SGTVETLEIRSD-----VLAVSFRP 530 (893)
T ss_pred eEEEEEeecc-CceeeeEeeccc-----eeEEEEcC
Confidence 7888887655 333333334343 34666665
No 114
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=55.00 E-value=41 Score=19.66 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=20.2
Q ss_pred CCCEEEEEeCCCCeEEEEECCCCcE
Q 015502 351 TDDLIYIQSYGAPSLLVYDMNLKQW 375 (405)
Q Consensus 351 ~~~~i~~~~~~~~~~~~Yd~~~~~w 375 (405)
.++.+|+.......+.++|+++++.
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~ 26 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKV 26 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeE
Confidence 4678999877778999999987755
No 115
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=53.67 E-value=1.9e+02 Score=26.85 Aligned_cols=115 Identities=13% Similarity=0.197 Sum_probs=67.4
Q ss_pred ccEEEEEECCCCcchhhhcccccccCCccccCceEEe-CCcE-EEEEccccccccCccceEEEEEEeC--ceeEEE---e
Q 015502 257 RHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNL-KEKL-VMVGGIGKQDRPDIIKGIGIWVLNG--KEWQEV---A 329 (405)
Q Consensus 257 ~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~-~G~L-~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~v---~ 329 (405)
..++..|+++....+.. .....+.....++++-. +|++ |++.- ...++.||..++ ++.+++ .
T Consensus 166 ~Dri~~y~~~dg~L~~~---~~~~v~~G~GPRHi~FHpn~k~aY~v~E--------L~stV~v~~y~~~~g~~~~lQ~i~ 234 (346)
T COG2706 166 TDRIFLYDLDDGKLTPA---DPAEVKPGAGPRHIVFHPNGKYAYLVNE--------LNSTVDVLEYNPAVGKFEELQTID 234 (346)
T ss_pred CceEEEEEcccCccccc---cccccCCCCCcceEEEcCCCcEEEEEec--------cCCEEEEEEEcCCCceEEEeeeec
Confidence 36899999886664422 12233444445566654 4666 44443 247799999996 566555 4
Q ss_pred ccChhHHhccCCCC--ceeEEeeCCCEEEEEeCCCCeEEEE--ECCCCcEEEccCCCCCCC
Q 015502 330 RMPHKFFQGFGEFD--DVFASSGTDDLIYIQSYGAPSLLVY--DMNLKQWRWSHKCPVTKR 386 (405)
Q Consensus 330 ~i~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~Y--d~~~~~w~~l~~~p~~~~ 386 (405)
.||.. |.+.. .-+.+..+|..+|..++....+.+| |..+++.+.+..-|..+.
T Consensus 235 tlP~d----F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~ 291 (346)
T COG2706 235 TLPED----FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQ 291 (346)
T ss_pred cCccc----cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCc
Confidence 45543 32111 1123456799999988765555555 556677777766555443
No 116
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=53.48 E-value=1.9e+02 Score=26.83 Aligned_cols=159 Identities=11% Similarity=0.154 Sum_probs=82.5
Q ss_pred eEEEEEeCCCCCcccccccccccccCCCccEEE-Cc-EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCC
Q 015502 206 LSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC-DG-VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPC 283 (405)
Q Consensus 206 ~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~-~g-~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~ 283 (405)
-.+.+|+...+.=.....-....-......+++ || .+|+++.-. ..-.++.||....+++.+ .....+|.
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~------stV~v~~y~~~~g~~~~l--Q~i~tlP~ 238 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN------STVDVLEYNPAVGKFEEL--QTIDTLPE 238 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccC------CEEEEEEEcCCCceEEEe--eeeccCcc
Confidence 378899888777655432111100112233455 44 567776432 334566677766776643 22345566
Q ss_pred ccccC-c---e-EEeCCcEEEEEccccccccCccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEEeeCCCEEE
Q 015502 284 ALTCG-R---L-MNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIY 356 (405)
Q Consensus 284 ~~~~~-~---l-~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~ 356 (405)
++... . + +..+|+-+.++-++ .+.+.+|.+++ +.-+.+...+.+-. .+.-|-+...|+.++
T Consensus 239 dF~g~~~~aaIhis~dGrFLYasNRg-------~dsI~~f~V~~~~g~L~~~~~~~teg~-----~PR~F~i~~~g~~Li 306 (346)
T COG2706 239 DFTGTNWAAAIHISPDGRFLYASNRG-------HDSIAVFSVDPDGGKLELVGITPTEGQ-----FPRDFNINPSGRFLI 306 (346)
T ss_pred ccCCCCceeEEEECCCCCEEEEecCC-------CCeEEEEEEcCCCCEEEEEEEeccCCc-----CCccceeCCCCCEEE
Confidence 54321 1 1 23466555554332 34688999985 33444443332100 012234455677777
Q ss_pred EEeCCCC--eEEEEECCCCcEEEccCCCCC
Q 015502 357 IQSYGAP--SLLVYDMNLKQWRWSHKCPVT 384 (405)
Q Consensus 357 ~~~~~~~--~~~~Yd~~~~~w~~l~~~p~~ 384 (405)
...-..+ .++.-|.+|++...+......
T Consensus 307 aa~q~sd~i~vf~~d~~TG~L~~~~~~~~~ 336 (346)
T COG2706 307 AANQKSDNITVFERDKETGRLTLLGRYAVV 336 (346)
T ss_pred EEccCCCcEEEEEEcCCCceEEecccccCC
Confidence 6654333 455557788888888764443
No 117
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=51.46 E-value=75 Score=24.69 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=45.1
Q ss_pred EEEEEECCCCcchhhhcccccccCCcc--------------ccCceEEeCCcEEEEEcccccccc--CccceEEEEEEeC
Q 015502 259 GLISFNLSSRSSHALLIKSFIPVPCAL--------------TCGRLMNLKEKLVMVGGIGKQDRP--DIIKGIGIWVLNG 322 (405)
Q Consensus 259 ~i~~fD~~~~~w~~~~~~~~~~~p~~~--------------~~~~l~~~~G~L~~v~~~~~~~~~--~~~~~~~vw~l~~ 322 (405)
.|+.+|+..+.-. .+.+++|... ..+.+...+|+|-+|......... ...-.+..|.|..
T Consensus 7 GIL~CD~~~~~p~----l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~ 82 (131)
T PF07762_consen 7 GILFCDVFDDSPV----LRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKD 82 (131)
T ss_pred CEEEEECCCCCcc----EEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEecc
Confidence 5778888765522 3566776432 123467789999888654322111 2356799999985
Q ss_pred -----ceeEEEeccCh
Q 015502 323 -----KEWQEVARMPH 333 (405)
Q Consensus 323 -----~~W~~v~~i~~ 333 (405)
.+|++-+.+..
T Consensus 83 ~~~~~~~W~~d~~v~~ 98 (131)
T PF07762_consen 83 PEGSSWEWKKDCEVDL 98 (131)
T ss_pred CCCCCCCEEEeEEEEh
Confidence 47999877653
No 118
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=51.12 E-value=2.2e+02 Score=26.79 Aligned_cols=133 Identities=13% Similarity=0.142 Sum_probs=73.5
Q ss_pred EEEEeCCCCCcccccccccccccCCCc-cEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--chhhhcccccccCCc
Q 015502 208 IHIYDSDTMMWVTSWKEVLTGWRAGDE-SIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SHALLIKSFIPVPCA 284 (405)
Q Consensus 208 ~~vy~s~~~~W~~~~~~~~~~~~~~~~-~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~ 284 (405)
.......+..|......... ...... ++..+|++|+-... ..+.++|+++.. |+.. ... -..
T Consensus 37 ~~~~~~g~~~W~~~~~~~~~-~~~~~~~~~~~dg~v~~~~~~---------G~i~A~d~~~g~~~W~~~----~~~-~~~ 101 (370)
T COG1520 37 VANNTSGTLLWSVSLGSGGG-GIYAGPAPADGDGTVYVGTRD---------GNIFALNPDTGLVKWSYP----LLG-AVA 101 (370)
T ss_pred EEcccCcceeeeeecccCcc-ceEeccccEeeCCeEEEecCC---------CcEEEEeCCCCcEEeccc----CcC-cce
Confidence 34445567778643111000 011112 48889999998432 279999999876 7632 111 011
Q ss_pred cccCceEEeCCcEEEEEccccccccCccceEEEEEEeC----ceeEEEeccChhHHhccCCCCcee-EEeeCCCEEEEEe
Q 015502 285 LTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG----KEWQEVARMPHKFFQGFGEFDDVF-ASSGTDDLIYIQS 359 (405)
Q Consensus 285 ~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~----~~W~~v~~i~~~~~~~~~~~~~~~-~~~~~~~~i~~~~ 359 (405)
.....++..+|+||+-... -.+|.|+. ..|..-..-. +. .. .....++.||+..
T Consensus 102 ~~~~~~~~~~G~i~~g~~~-----------g~~y~ld~~~G~~~W~~~~~~~---~~-------~~~~~v~~~~~v~~~s 160 (370)
T COG1520 102 QLSGPILGSDGKIYVGSWD-----------GKLYALDASTGTLVWSRNVGGS---PY-------YASPPVVGDGTVYVGT 160 (370)
T ss_pred eccCceEEeCCeEEEeccc-----------ceEEEEECCCCcEEEEEecCCC---eE-------EecCcEEcCcEEEEec
Confidence 2234455558998765542 16666664 3677643331 11 11 1234577888764
Q ss_pred CCCCeEEEEECCCCcEEE
Q 015502 360 YGAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 360 ~~~~~~~~Yd~~~~~w~~ 377 (405)
.+..++..|.++++-.+
T Consensus 161 -~~g~~~al~~~tG~~~W 177 (370)
T COG1520 161 -DDGHLYALNADTGTLKW 177 (370)
T ss_pred -CCCeEEEEEccCCcEEE
Confidence 45688899988774433
No 119
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=50.95 E-value=2.5e+02 Score=27.70 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=22.6
Q ss_pred CccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--ch
Q 015502 233 DESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SH 271 (405)
Q Consensus 233 ~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~ 271 (405)
..+++.+|.+|+.... ..+.++|..+.+ |+
T Consensus 55 ~sPvv~~g~vy~~~~~---------g~l~AlD~~tG~~~W~ 86 (488)
T cd00216 55 GTPLVVDGDMYFTTSH---------SALFALDAATGKVLWR 86 (488)
T ss_pred cCCEEECCEEEEeCCC---------CcEEEEECCCChhhce
Confidence 3578889999997632 479999998654 65
No 120
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=49.75 E-value=2.8e+02 Score=27.70 Aligned_cols=135 Identities=12% Similarity=0.116 Sum_probs=83.9
Q ss_pred CccEEEEEECCCCcchhhhcccccccCCcc-ccCceEEeCCcEEEEEccccc-cccCccceEEEEEEeCceeEEEeccCh
Q 015502 256 NRHGLISFNLSSRSSHALLIKSFIPVPCAL-TCGRLMNLKEKLVMVGGIGKQ-DRPDIIKGIGIWVLNGKEWQEVARMPH 333 (405)
Q Consensus 256 ~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~-~~~~l~~~~G~L~~v~~~~~~-~~~~~~~~~~vw~l~~~~W~~v~~i~~ 333 (405)
....|..|++...+.... -....|... ....|-+++|.|-+++..... ........=.|+.|| +.-+.+.++..
T Consensus 246 ~~T~I~kf~~~~~~~~y~---~sg~V~G~llnqFsmdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD-~~L~~vG~l~~ 321 (521)
T PF09826_consen 246 ESTTIYKFALDGGKIEYV---GSGSVPGYLLNQFSMDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLD-EDLKIVGSLEG 321 (521)
T ss_pred CceEEEEEEccCCcEEEE---EEEEECcEEcccccEeccCCEEEEEEecCcccccCCCCceEEEEEEC-CCCcEeEEccc
Confidence 446799999987664321 123444433 345577899999999865321 112234567778886 66677777753
Q ss_pred hHHhccCCCCceeEEeeCCCEEEEEeC-CCCeEEEEECCCC----cEEE--ccC-CCCCCCCcccceeeeeece
Q 015502 334 KFFQGFGEFDDVFASSGTDDLIYIQSY-GAPSLLVYDMNLK----QWRW--SHK-CPVTKRFPLQLFTGFCFEP 399 (405)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~Yd~~~~----~w~~--l~~-~p~~~~~~~~~~~~~~~~p 399 (405)
++..+.+.++-..|+..|++.. ..+-+++.|+.+= ..-+ +|. .-|-|...+..+.|+..+-
T Consensus 322 -----la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP~~e~~LlGiG~~~ 390 (521)
T PF09826_consen 322 -----LAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHPYDENHLLGIGKDT 390 (521)
T ss_pred -----cCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEECccchhceeECCCCeEEEEcccC
Confidence 2234578888889999999854 5679999999873 2222 232 2233445566677776553
No 121
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=49.58 E-value=51 Score=19.16 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=18.4
Q ss_pred CEEEEEeCCCCeEEEEECCCCcEEE
Q 015502 353 DLIYIQSYGAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 353 ~~i~~~~~~~~~~~~Yd~~~~~w~~ 377 (405)
+.||+. ..+..++++|.++++-.+
T Consensus 1 ~~v~~~-~~~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 1 GRVYVG-TPDGYLYALDAKTGKVLW 24 (38)
T ss_dssp TEEEEE-TTTSEEEEEETTTTSEEE
T ss_pred CEEEEe-CCCCEEEEEECCCCCEEE
Confidence 467776 457799999999996554
No 122
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=47.70 E-value=2.3e+02 Score=26.12 Aligned_cols=128 Identities=16% Similarity=0.057 Sum_probs=67.9
Q ss_pred cEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhccccccc--CCcccc-CceEEeCCcEEEEEccccccc---
Q 015502 235 SIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPV--PCALTC-GRLMNLKEKLVMVGGIGKQDR--- 308 (405)
Q Consensus 235 ~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~--p~~~~~-~~l~~~~G~L~~v~~~~~~~~--- 308 (405)
.++.++.++++... ..++..+++. .+|...|.+.+|.. |.++.+ -.|+..+|+...|+.....+.
T Consensus 108 ia~~~~~l~fVNT~--------fSCLatl~~~-~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~g 178 (335)
T TIGR03032 108 LALGAGRLLFVNTL--------FSCLATVSPD-YSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADG 178 (335)
T ss_pred eeecCCcEEEEECc--------ceeEEEECCC-CccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCccc
Confidence 34445566666532 2467777763 33343443444432 333222 247788898877766532110
Q ss_pred --cCccceEEEEEEeCcee-EEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEccCCCCC
Q 015502 309 --PDIIKGIGIWVLNGKEW-QEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVT 384 (405)
Q Consensus 309 --~~~~~~~~vw~l~~~~W-~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~~p~~ 384 (405)
......-.+.+...++= ..-..||+. . -..++.+|+.....+.+..+|+++++.+.+..+|..
T Consensus 179 WR~~~~~gG~vidv~s~evl~~GLsmPhS-----------P--RWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~ 244 (335)
T TIGR03032 179 WREGRRDGGCVIDIPSGEVVASGLSMPHS-----------P--RWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGF 244 (335)
T ss_pred ccccccCCeEEEEeCCCCEEEcCccCCcC-----------C--cEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCC
Confidence 00112222233332210 011122220 0 125778888877788999999999999999888754
No 123
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=44.52 E-value=2.6e+02 Score=25.93 Aligned_cols=140 Identities=14% Similarity=0.142 Sum_probs=70.0
Q ss_pred eEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcc
Q 015502 206 LSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCAL 285 (405)
Q Consensus 206 ~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~ 285 (405)
..+.+++..+...... ..+...+.+....+|++.+-|.. ...|--||.+...-- ++++--.
T Consensus 340 RTikvW~~st~efvRt----l~gHkRGIAClQYr~rlvVSGSS--------DntIRlwdi~~G~cL-----RvLeGHE-- 400 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVRT----LNGHKRGIACLQYRDRLVVSGSS--------DNTIRLWDIECGACL-----RVLEGHE-- 400 (499)
T ss_pred ceEEEEeccceeeehh----hhcccccceehhccCeEEEecCC--------CceEEEEeccccHHH-----HHHhchH--
Confidence 3677777766655332 22222233445568998887753 257888998877621 1221111
Q ss_pred ccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeE
Q 015502 286 TCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSL 365 (405)
Q Consensus 286 ~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 365 (405)
.-..-+..+++=.+-++++ .++.||+|+...=-....-..++.........+|+...+.-.|.... -+..+
T Consensus 401 eLvRciRFd~krIVSGaYD--------GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsss-HddtI 471 (499)
T KOG0281|consen 401 ELVRCIRFDNKRIVSGAYD--------GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSS-HDDTI 471 (499)
T ss_pred HhhhheeecCceeeecccc--------ceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEecc-CCCeE
Confidence 1112234455555566543 45999999853200000000011111111124565555555555444 35578
Q ss_pred EEEECCCC
Q 015502 366 LVYDMNLK 373 (405)
Q Consensus 366 ~~Yd~~~~ 373 (405)
.++|..++
T Consensus 472 LiWdFl~~ 479 (499)
T KOG0281|consen 472 LIWDFLNG 479 (499)
T ss_pred EEEEcCCC
Confidence 88887665
No 124
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=44.16 E-value=2.3e+02 Score=28.27 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=34.4
Q ss_pred CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeC--CcEEEEEccccccccCccceEE
Q 015502 239 DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLK--EKLVMVGGIGKQDRPDIIKGIG 316 (405)
Q Consensus 239 ~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~--G~L~~v~~~~~~~~~~~~~~~~ 316 (405)
+.-+|+.+.. ..++.||++...|-. ++.........+..+ ..|+.+++. ...|+
T Consensus 145 scDly~~gsg---------~evYRlNLEqGrfL~-------P~~~~~~~lN~v~in~~hgLla~Gt~--------~g~VE 200 (703)
T KOG2321|consen 145 SCDLYLVGSG---------SEVYRLNLEQGRFLN-------PFETDSGELNVVSINEEHGLLACGTE--------DGVVE 200 (703)
T ss_pred CccEEEeecC---------cceEEEEcccccccc-------ccccccccceeeeecCccceEEeccc--------CceEE
Confidence 4457777632 479999999999742 222222222233222 345545542 24599
Q ss_pred EEEEeCc
Q 015502 317 IWVLNGK 323 (405)
Q Consensus 317 vw~l~~~ 323 (405)
.|+....
T Consensus 201 fwDpR~k 207 (703)
T KOG2321|consen 201 FWDPRDK 207 (703)
T ss_pred Eecchhh
Confidence 9988753
No 125
>PF03478 DUF295: Protein of unknown function (DUF295); InterPro: IPR005174 This family of proteins are found in plants. The function of the proteins is unknown.
Probab=43.33 E-value=28 Score=22.30 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=14.9
Q ss_pred CCCEEEEEeC----CCCeEEEEEC
Q 015502 351 TDDLIYIQSY----GAPSLLVYDM 370 (405)
Q Consensus 351 ~~~~i~~~~~----~~~~~~~Yd~ 370 (405)
.+|.||+... ....+.+||+
T Consensus 31 ~~n~IYf~~~~~~~~~~~~~Vy~m 54 (54)
T PF03478_consen 31 KGNCIYFLDDSSDESDRDIGVYNM 54 (54)
T ss_pred cCCEEEEecCCCCCCCCCEEEEeC
Confidence 5889999764 3468888886
No 126
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=42.33 E-value=3.7e+02 Score=26.93 Aligned_cols=60 Identities=10% Similarity=0.196 Sum_probs=34.3
Q ss_pred EEEEEeCC--CCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc
Q 015502 207 SIHIYDSD--TMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS 269 (405)
Q Consensus 207 ~~~vy~s~--~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~ 269 (405)
.+..+|.+ +-.|+...............+++.+|++|+-..... ......|.+||.++.+
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~---~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGE---FGVRGYVTAYDAKTGK 192 (527)
T ss_pred EEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccc---cCCCcEEEEEECCCCc
Confidence 55666664 455866432211112233467888999887543210 1123589999998866
No 127
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=42.24 E-value=99 Score=29.25 Aligned_cols=95 Identities=15% Similarity=0.116 Sum_probs=51.8
Q ss_pred cEEEEEECCCCcchhhhcccccccCCccccCceE-EeCCc-EEEEEccccccccCccceEEEEEEeCceeEEEeccChhH
Q 015502 258 HGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEK-LVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKF 335 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~ 335 (405)
..+...|..+.+-- ..++..... +..+. .-+|+ +|+.+. + ..+.++++...+ .+.+++-.
T Consensus 16 ~~v~viD~~t~~~~-----~~i~~~~~~-h~~~~~s~Dgr~~yv~~r-d--------g~vsviD~~~~~--~v~~i~~G- 77 (369)
T PF02239_consen 16 GSVAVIDGATNKVV-----ARIPTGGAP-HAGLKFSPDGRYLYVANR-D--------GTVSVIDLATGK--VVATIKVG- 77 (369)
T ss_dssp TEEEEEETTT-SEE-----EEEE-STTE-EEEEE-TT-SSEEEEEET-T--------SEEEEEETTSSS--EEEEEE-S-
T ss_pred CEEEEEECCCCeEE-----EEEcCCCCc-eeEEEecCCCCEEEEEcC-C--------CeEEEEECCccc--EEEEEecC-
Confidence 58899999887621 122222211 22232 33464 666543 1 348888887655 44444321
Q ss_pred HhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcE
Q 015502 336 FQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQW 375 (405)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w 375 (405)
....-+++..+|+.+|+.++....+.++|.++.+-
T Consensus 78 -----~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~ 112 (369)
T PF02239_consen 78 -----GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP 112 (369)
T ss_dssp -----SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E
T ss_pred -----CCcceEEEcCCCCEEEEEecCCCceeEeccccccc
Confidence 11123455678999999887788999999988654
No 128
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=42.10 E-value=3.2e+02 Score=26.23 Aligned_cols=102 Identities=13% Similarity=0.243 Sum_probs=60.1
Q ss_pred EEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccc
Q 015502 207 SIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALT 286 (405)
Q Consensus 207 ~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~ 286 (405)
.+.|||..+.. .. ..+ ++.......+.+..-=||+.... ....+..+|++..+= ...+..+....
T Consensus 370 ~vkiwdlks~~--~~-a~F-pght~~vk~i~FsENGY~Lat~a------dd~~V~lwDLRKl~n-----~kt~~l~~~~~ 434 (506)
T KOG0289|consen 370 VVKIWDLKSQT--NV-AKF-PGHTGPVKAISFSENGYWLATAA------DDGSVKLWDLRKLKN-----FKTIQLDEKKE 434 (506)
T ss_pred eEEEEEcCCcc--cc-ccC-CCCCCceeEEEeccCceEEEEEe------cCCeEEEEEehhhcc-----cceeecccccc
Confidence 78899987766 22 122 22333345666756668886543 234699999987651 12344454322
Q ss_pred cC-ceEEeCCcEEEEEccccccccCccceEEEEEEe--CceeEEEeccCh
Q 015502 287 CG-RLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLN--GKEWQEVARMPH 333 (405)
Q Consensus 287 ~~-~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~--~~~W~~v~~i~~ 333 (405)
-. .-...-|+.+.+.+ ..+.||..+ ..+|.++...+.
T Consensus 435 v~s~~fD~SGt~L~~~g----------~~l~Vy~~~k~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 435 VNSLSFDQSGTYLGIAG----------SDLQVYICKKKTKSWTEIKELAD 474 (506)
T ss_pred ceeEEEcCCCCeEEeec----------ceeEEEEEecccccceeeehhhh
Confidence 11 12233477776764 347788777 479999987765
No 129
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=41.89 E-value=1.2e+02 Score=27.89 Aligned_cols=134 Identities=13% Similarity=0.150 Sum_probs=60.4
Q ss_pred cEEE-CcEEEeeEEecCCCCCCC-ccEEEEEECC-CCcchhhhcccccccCCccccCceEEe-CCcEEEEEccccccccC
Q 015502 235 SIIC-DGVLYFLIYATGGGAPEN-RHGLISFNLS-SRSSHALLIKSFIPVPCALTCGRLMNL-KEKLVMVGGIGKQDRPD 310 (405)
Q Consensus 235 ~v~~-~g~iy~l~~~~~~~~~~~-~~~i~~fD~~-~~~w~~~~~~~~~~~p~~~~~~~l~~~-~G~L~~v~~~~~~~~~~ 310 (405)
+|.. ||.|.+=..... .... ...++.|-.. ...|. ......|..+..+.++++ +|+|+|+..+..
T Consensus 126 GV~m~dGTLVFPv~a~~--~~~~~~~SlIiYS~d~g~~W~----lskg~s~~gC~~psv~EWe~gkLlM~~~c~~----- 194 (310)
T PF13859_consen 126 GVVMEDGTLVFPVQATK--KNGDGTVSLIIYSTDDGKTWK----LSKGMSPAGCSDPSVVEWEDGKLLMMTACDD----- 194 (310)
T ss_dssp -EE-TTS-EEEEEEEEE--TT---EEEEEEEESSTTSS-E----E-S----TT-EEEEEEEE-TTEEEEEEE-TT-----
T ss_pred ceEEcCCCEEEEEeeec--cCccceEEEEEEECCCccceE----eccccCCCCcceEEEEeccCCeeEEEEeccc-----
Confidence 4444 777666432110 1122 3678888776 56675 222233445556789999 799999988642
Q ss_pred ccceEEEEEEeC--ceeEE-EeccChhHHhccCCCCceeE----EeeCCCEEEEEeC---------CCCeEEEEECCCCc
Q 015502 311 IIKGIGIWVLNG--KEWQE-VARMPHKFFQGFGEFDDVFA----SSGTDDLIYIQSY---------GAPSLLVYDMNLKQ 374 (405)
Q Consensus 311 ~~~~~~vw~l~~--~~W~~-v~~i~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~---------~~~~~~~Yd~~~~~ 374 (405)
..-.||+-.+ .+|++ +..++.-+-+.-+.....+. ....|..|++... ....++.+=.+.++
T Consensus 195 --g~rrVYeS~DmG~tWtea~gtlsrVw~ns~~~~~~~v~~~~ta~iegr~VmL~T~~~y~~~~~~~~~~L~LWlTDn~r 272 (310)
T PF13859_consen 195 --GRRRVYESGDMGTTWTEALGTLSRVWGNSQGVQGGFVTAGITATIEGRKVMLYTQPVYSSGNEKEKGRLHLWLTDNNR 272 (310)
T ss_dssp --S---EEEESSTTSS-EE-TTTTTT---SST-----EEEE----EETTEEEEEEEEE---SS-T-T-B-EEEEEESSS-
T ss_pred --ceEEEEEEcccceehhhccCccceeeccccccCccceeeeeeeccCCcEEEEEEEeeccccCccccceeEEEeCCCcE
Confidence 2357888875 58998 56666433221111112222 2345555655421 12345555555555
Q ss_pred EEEccCC
Q 015502 375 WRWSHKC 381 (405)
Q Consensus 375 w~~l~~~ 381 (405)
.-.|.+.
T Consensus 273 ~~~vGpv 279 (310)
T PF13859_consen 273 IFDVGPV 279 (310)
T ss_dssp EEEEEE-
T ss_pred EEEEecc
Confidence 5555544
No 130
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=38.18 E-value=3.9e+02 Score=26.00 Aligned_cols=108 Identities=12% Similarity=0.119 Sum_probs=53.3
Q ss_pred ECcEEEeeEEecCCCCCCCccEEEEEECCCC-cchhhhcccccccCCccccCc-eEEeCCcEEEEEccccccccCccceE
Q 015502 238 CDGVLYFLIYATGGGAPENRHGLISFNLSSR-SSHALLIKSFIPVPCALTCGR-LMNLKEKLVMVGGIGKQDRPDIIKGI 315 (405)
Q Consensus 238 ~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~-~w~~~~~~~~~~~p~~~~~~~-l~~~~G~L~~v~~~~~~~~~~~~~~~ 315 (405)
.++.|.+-|++. ..|--||.... .|. ..+-....--. +..-.|.+.+..+ ...+
T Consensus 164 ~~~hivvtGsYD--------g~vrl~DtR~~~~~v-------~elnhg~pVe~vl~lpsgs~iasAg---------Gn~v 219 (487)
T KOG0310|consen 164 ANDHIVVTGSYD--------GKVRLWDTRSLTSRV-------VELNHGCPVESVLALPSGSLIASAG---------GNSV 219 (487)
T ss_pred CCCeEEEecCCC--------ceEEEEEeccCCcee-------EEecCCCceeeEEEcCCCCEEEEcC---------CCeE
Confidence 366677776543 47888888877 332 22111111111 2233445554433 2459
Q ss_pred EEEEEeCceeEEEeccChhHHhccCCCCce--eEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEccC
Q 015502 316 GIWVLNGKEWQEVARMPHKFFQGFGEFDDV--FASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHK 380 (405)
Q Consensus 316 ~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~ 380 (405)
.||+|-.+. .++..+.. .. ..+ +.....+..++-. .-++.+-+|| +..|+.+..
T Consensus 220 kVWDl~~G~-qll~~~~~--H~-----KtVTcL~l~s~~~rLlS~-sLD~~VKVfd--~t~~Kvv~s 275 (487)
T KOG0310|consen 220 KVWDLTTGG-QLLTSMFN--HN-----KTVTCLRLASDSTRLLSG-SLDRHVKVFD--TTNYKVVHS 275 (487)
T ss_pred EEEEecCCc-eehhhhhc--cc-----ceEEEEEeecCCceEeec-ccccceEEEE--ccceEEEEe
Confidence 999998543 22232221 00 011 2223344444443 3467899999 555666654
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=37.59 E-value=1.2e+02 Score=29.53 Aligned_cols=55 Identities=15% Similarity=0.296 Sum_probs=32.7
Q ss_pred cEEEEEECCCCcchhhhcccccccCC----ccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCce
Q 015502 258 HGLISFNLSSRSSHALLIKSFIPVPC----ALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKE 324 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~----~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~ 324 (405)
.+|-++|+....=. ..+..+++ .+.......-+|+-+++++. ..++.||+|-...
T Consensus 440 gcVKVWdis~pg~k----~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe--------astlsiWDLAapT 498 (705)
T KOG0639|consen 440 GCVKVWDISQPGNK----SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE--------ASTLSIWDLAAPT 498 (705)
T ss_pred CeEEEeeccCCCCC----CccccccccCcccceeeeEecCCCceEEeccc--------cceeeeeeccCCC
Confidence 57888888643210 11222222 22233455668888888873 5779999998644
No 132
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=36.34 E-value=76 Score=17.31 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=18.8
Q ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEE
Q 015502 351 TDDLIYIQSYGAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 351 ~~~~i~~~~~~~~~~~~Yd~~~~~w~~ 377 (405)
.++.+|+.. .+..++++|.++++-.+
T Consensus 5 ~~~~v~~~~-~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVGS-TDGTLYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEEc-CCCEEEEEEcccCcEEE
Confidence 355777764 46799999999886544
No 133
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=34.79 E-value=3.5e+02 Score=24.57 Aligned_cols=136 Identities=11% Similarity=0.061 Sum_probs=67.5
Q ss_pred ceEEEEeCccc-ceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccc--c
Q 015502 147 SELYVCNPISK-SWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSW--K 223 (405)
Q Consensus 147 ~~~~v~NP~T~-~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~--~ 223 (405)
..+.|||..|. +...+|.+ ..+ ....++.|++ ..++.|+- ...+-||+..+..=+... .
T Consensus 77 GklIvWDs~TtnK~haipl~-s~W-----VMtCA~sPSg---~~VAcGGL---------dN~Csiy~ls~~d~~g~~~v~ 138 (343)
T KOG0286|consen 77 GKLIVWDSFTTNKVHAIPLP-SSW-----VMTCAYSPSG---NFVACGGL---------DNKCSIYPLSTRDAEGNVRVS 138 (343)
T ss_pred CeEEEEEcccccceeEEecC-cee-----EEEEEECCCC---CeEEecCc---------CceeEEEecccccccccceee
Confidence 56778998884 55556643 222 2345566654 45666653 237788887533111110 1
Q ss_pred cccccccCC-CccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcc---ccCceEEeCCcEEE
Q 015502 224 EVLTGWRAG-DESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCAL---TCGRLMNLKEKLVM 299 (405)
Q Consensus 224 ~~~~~~~~~-~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~---~~~~l~~~~G~L~~ 299 (405)
....+.... ....+++ --+.+.+.++ ....-.|+++.+-.. .+-... ..-.|...+++.|+
T Consensus 139 r~l~gHtgylScC~f~d-D~~ilT~SGD-------~TCalWDie~g~~~~-------~f~GH~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 139 RELAGHTGYLSCCRFLD-DNHILTGSGD-------MTCALWDIETGQQTQ-------VFHGHTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred eeecCccceeEEEEEcC-CCceEecCCC-------ceEEEEEcccceEEE-------EecCCcccEEEEecCCCCCCeEE
Confidence 111222211 1223333 3344544332 356677888776221 111110 01112234788888
Q ss_pred EEccccccccCccceEEEEEEeCc
Q 015502 300 VGGIGKQDRPDIIKGIGIWVLNGK 323 (405)
Q Consensus 300 v~~~~~~~~~~~~~~~~vw~l~~~ 323 (405)
-++.+ ..-.+|++.++
T Consensus 204 Sg~cD--------~~aklWD~R~~ 219 (343)
T KOG0286|consen 204 SGGCD--------KSAKLWDVRSG 219 (343)
T ss_pred ecccc--------cceeeeeccCc
Confidence 88764 34788988865
No 134
>PRK00178 tolB translocation protein TolB; Provisional
Probab=34.75 E-value=4.2e+02 Score=25.39 Aligned_cols=188 Identities=12% Similarity=0.092 Sum_probs=90.5
Q ss_pred CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccc
Q 015502 146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEV 225 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~ 225 (405)
...++++|..+++...+...+... ......|++ ++.++..... + ...+++++..++..+......
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~~------~~~~~SpDG-~~la~~~~~~---g-----~~~Iy~~d~~~~~~~~lt~~~ 286 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGLN------GAPAWSPDG-SKLAFVLSKD---G-----NPEIYVMDLASRQLSRVTNHP 286 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCCc------CCeEECCCC-CEEEEEEccC---C-----CceEEEEECCCCCeEEcccCC
Confidence 357999999999888776543111 122333332 2323332211 1 247888898888765432110
Q ss_pred cccccCCCccEEE-Cc-EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCC-cEEEEEc
Q 015502 226 LTGWRAGDESIIC-DG-VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKE-KLVMVGG 302 (405)
Q Consensus 226 ~~~~~~~~~~v~~-~g-~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G-~L~~v~~ 302 (405)
.....+.+- +| .+++..... ....|..+|+.+.+...+ .............-+| .|++...
T Consensus 287 ----~~~~~~~~spDg~~i~f~s~~~------g~~~iy~~d~~~g~~~~l------t~~~~~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 287 ----AIDTEPFWGKDGRTLYFTSDRG------GKPQIYKVNVNGGRAERV------TFVGNYNARPRLSADGKTLVMVHR 350 (430)
T ss_pred ----CCcCCeEECCCCCEEEEEECCC------CCceEEEEECCCCCEEEe------ecCCCCccceEECCCCCEEEEEEc
Confidence 011122222 44 466654322 124688889887765421 1111111111122345 4444443
Q ss_pred cccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC--CCCeEEEEECCCCcEEEcc
Q 015502 303 IGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY--GAPSLLVYDMNLKQWRWSH 379 (405)
Q Consensus 303 ~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~Yd~~~~~w~~l~ 379 (405)
... ...+.+++++.++.+.+..-.. . ........|..|++... ....+.+.+++.+.=+.++
T Consensus 351 ~~~------~~~l~~~dl~tg~~~~lt~~~~---~------~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 351 QDG------NFHVAAQDLQRGSVRILTDTSL---D------ESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred cCC------ceEEEEEECCCCCEEEccCCCC---C------CCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 111 1235555555666555433211 0 11244557777777653 2346788888765544554
No 135
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=34.61 E-value=3.3e+02 Score=24.17 Aligned_cols=187 Identities=11% Similarity=0.111 Sum_probs=0.0
Q ss_pred EEEEeCCCCceEEEEeCcccceee-ccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCC
Q 015502 138 VCFMDNDSRSELYVCNPISKSWKK-LEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTM 216 (405)
Q Consensus 138 l~~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~ 216 (405)
+++.....+..+..|-..||.+.+ ++.+. ...++.-+.-|. +.+++++.. .+.+||..++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~d----sqVNrLeiTpdk-----~~LAaa~~q----------hvRlyD~~S~ 71 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPD----SQVNRLEITPDK-----KDLAAAGNQ----------HVRLYDLNSN 71 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCc----cceeeEEEcCCc-----chhhhccCC----------eeEEEEccCC
Q ss_pred CcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeC
Q 015502 217 MWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLK 294 (405)
Q Consensus 217 ~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~ 294 (405)
.=..... .-+......+|-+ +|+--+-++.. ..+-..|+..-+=+ +....+......-+--..
T Consensus 72 np~Pv~t--~e~h~kNVtaVgF~~dgrWMyTgseD--------gt~kIWdlR~~~~q-----R~~~~~spVn~vvlhpnQ 136 (311)
T KOG0315|consen 72 NPNPVAT--FEGHTKNVTAVGFQCDGRWMYTGSED--------GTVKIWDLRSLSCQ-----RNYQHNSPVNTVVLHPNQ 136 (311)
T ss_pred CCCceeE--EeccCCceEEEEEeecCeEEEecCCC--------ceEEEEeccCcccc-----hhccCCCCcceEEecCCc
Q ss_pred CcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCc
Q 015502 295 EKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQ 374 (405)
Q Consensus 295 G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~ 374 (405)
++|++... ...+.||+|.+..-...-.-.+.-+. ..+.+..+|..+--.+ ..+.++++++-+++
T Consensus 137 teLis~dq---------sg~irvWDl~~~~c~~~liPe~~~~i------~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~ 200 (311)
T KOG0315|consen 137 TELISGDQ---------SGNIRVWDLGENSCTHELIPEDDTSI------QSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQ 200 (311)
T ss_pred ceEEeecC---------CCcEEEEEccCCccccccCCCCCcce------eeEEEcCCCcEEEEec-CCccEEEEEccCCC
No 136
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.51 E-value=1.5e+02 Score=25.54 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=48.2
Q ss_pred ceEEeCCcEEEEEccccccccCccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEE
Q 015502 289 RLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLL 366 (405)
Q Consensus 289 ~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 366 (405)
.|.-.+|+|+.-.+.-+ .+.+.+|+|.. ..|++--. |+..| ++ ++...|+.+|.-...+...+
T Consensus 50 GL~~~~g~i~esTG~yg------~S~ir~~~L~~gq~~~s~~l~-~~~~F---gE-----Git~~gd~~y~LTw~egvaf 114 (262)
T COG3823 50 GLEYLDGHILESTGLYG------FSKIRVSDLTTGQEIFSEKLA-PDTVF---GE-----GITKLGDYFYQLTWKEGVAF 114 (262)
T ss_pred ceeeeCCEEEEeccccc------cceeEEEeccCceEEEEeecC-Ccccc---cc-----ceeeccceEEEEEeccceeE
Confidence 57778888888776432 46799999995 45665322 33332 22 33445777887665566677
Q ss_pred EEECCCCcEEEccCCCCC
Q 015502 367 VYDMNLKQWRWSHKCPVT 384 (405)
Q Consensus 367 ~Yd~~~~~w~~l~~~p~~ 384 (405)
.||.++ .+.+...+|.
T Consensus 115 ~~d~~t--~~~lg~~~y~ 130 (262)
T COG3823 115 KYDADT--LEELGRFSYE 130 (262)
T ss_pred EEChHH--hhhhcccccC
Confidence 777654 3445555443
No 137
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=34.38 E-value=3.5e+02 Score=24.45 Aligned_cols=107 Identities=10% Similarity=0.165 Sum_probs=60.4
Q ss_pred cEEEEEECCCCcchhhhcccccccCCccccCceE-EeCCcEEEEEccccccccCccceEEEEEEeCceeEEEec-----c
Q 015502 258 HGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVAR-----M 331 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~-----i 331 (405)
..|-.||..+.+|+.+ ..--. ..-..|. ..+++|++.+...-.. .....+..|+++..+|+.+.. +
T Consensus 16 ~~lC~yd~~~~qW~~~-----g~~i~-G~V~~l~~~~~~~Llv~G~ft~~~--~~~~~la~yd~~~~~w~~~~~~~s~~i 87 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSP-----GNGIS-GTVTDLQWASNNQLLVGGNFTLNG--TNSSNLATYDFKNQTWSSLGGGSSNSI 87 (281)
T ss_pred CEEEEEECCCCEeecC-----CCCce-EEEEEEEEecCCEEEEEEeeEECC--CCceeEEEEecCCCeeeecCCcccccC
Confidence 4688899999999842 11100 0111222 3467888877653221 135679999999999987755 2
Q ss_pred ChhHHhccCCCCceeEE-eeCCCEEEEEeC-CCCeEEEEECCCCcEEEccC
Q 015502 332 PHKFFQGFGEFDDVFAS-SGTDDLIYIQSY-GAPSLLVYDMNLKQWRWSHK 380 (405)
Q Consensus 332 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~-~~~~~~~Yd~~~~~w~~l~~ 380 (405)
|... ..+.. ..++..+++... .....+++--+..+|..+..
T Consensus 88 pgpv--------~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 88 PGPV--------TALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred CCcE--------EEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence 2211 11222 234555665432 22334444447788999876
No 138
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=33.82 E-value=4.6e+02 Score=25.57 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=52.3
Q ss_pred cEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHh
Q 015502 258 HGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQ 337 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~ 337 (405)
..|-.+|+....-. .+.+.-.......-...-.|++.+.+..+ .++.||++..++=.++-.--.
T Consensus 225 ~tiriwd~~~~~~~----~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D--------~tvriWd~~~~~~~~~l~~hs---- 288 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRN----LKTLKGHSTYVTSVAFSPDGNLLVSGSDD--------GTVRIWDVRTGECVRKLKGHS---- 288 (456)
T ss_pred ceEEEeeccCCCeE----EEEecCCCCceEEEEecCCCCEEEEecCC--------CcEEEEeccCCeEEEeeeccC----
Confidence 47888998433211 01122111111122234456677666543 569999999854433322111
Q ss_pred ccCCCCce--eEEeeCCCEEEEEeCCCCeEEEEECCCCcEE
Q 015502 338 GFGEFDDV--FASSGTDDLIYIQSYGAPSLLVYDMNLKQWR 376 (405)
Q Consensus 338 ~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~ 376 (405)
..+ +++...++.+.... .+..+.+||+.++.-.
T Consensus 289 -----~~is~~~f~~d~~~l~s~s-~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 289 -----DGISGLAFSPDGNLLVSAS-YDGTIRVWDLETGSKL 323 (456)
T ss_pred -----CceEEEEECCCCCEEEEcC-CCccEEEEECCCCcee
Confidence 112 23345566666654 4789999999999854
No 139
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=31.95 E-value=4e+02 Score=24.32 Aligned_cols=30 Identities=13% Similarity=0.317 Sum_probs=20.1
Q ss_pred ceeEEeeCCCEEEEEeCCCCeEEEEECCCCc
Q 015502 344 DVFASSGTDDLIYIQSYGAPSLLVYDMNLKQ 374 (405)
Q Consensus 344 ~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~ 374 (405)
.+++....|+.+.+- ..++.+++||+.+..
T Consensus 137 kVy~~~v~g~~LvVg-~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 137 KVYCMDVSGNRLVVG-TSDRKVLIYDLRNLD 166 (323)
T ss_pred eEEEEeccCCEEEEe-ecCceEEEEEccccc
Confidence 345555556666663 357799999999763
No 140
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=31.65 E-value=1.7e+02 Score=22.04 Aligned_cols=39 Identities=15% Similarity=0.457 Sum_probs=26.8
Q ss_pred ceEEEEeCcccc-eeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEe
Q 015502 147 SELYVCNPISKS-WKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVK 193 (405)
Q Consensus 147 ~~~~v~NP~T~~-~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~ 193 (405)
-+++.+||-+++ |..+ . ....+.+..|...+.|.|....
T Consensus 16 A~v~~~~p~~~~~W~~~-~-------~~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV-K-------GTGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEEETTTSESEEES-S-------SEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEcCCCCcEeeC-C-------eEEEEEEEEECCCCEEEEEEEE
Confidence 468899999988 9976 1 1234566667767777776654
No 141
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=31.30 E-value=84 Score=22.76 Aligned_cols=18 Identities=28% Similarity=0.170 Sum_probs=15.2
Q ss_pred CCeEEEEECCCCcEEEcc
Q 015502 362 APSLLVYDMNLKQWRWSH 379 (405)
Q Consensus 362 ~~~~~~Yd~~~~~w~~l~ 379 (405)
...++.||+.+++.+.|-
T Consensus 36 ~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp -EEEEEEETTTTEEEEEE
T ss_pred CcCEEEEECCCCeEEEeh
Confidence 468999999999998875
No 142
>PF15408 PH_7: Pleckstrin homology domain
Probab=31.01 E-value=31 Score=24.51 Aligned_cols=24 Identities=21% Similarity=0.558 Sum_probs=19.9
Q ss_pred hhhhHHHhhcchhhHhhhcChhhh
Q 015502 59 IASIFRAGCVCRRWHEIVSSRRFL 82 (405)
Q Consensus 59 ~~~l~r~r~VcK~W~~~i~~~~F~ 82 (405)
++.+...+-|||+|-....+|.|.
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhh
Confidence 455667788999999999999875
No 143
>PRK05137 tolB translocation protein TolB; Provisional
Probab=30.53 E-value=5e+02 Score=25.00 Aligned_cols=188 Identities=13% Similarity=0.084 Sum_probs=87.8
Q ss_pred CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccc
Q 015502 146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEV 225 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~ 225 (405)
...++++|+.+++...+...+... ......|++ +. |++..... + ...+++++..++.-+.....
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~~------~~~~~SPDG-~~-la~~~~~~--g-----~~~Iy~~d~~~~~~~~Lt~~- 288 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGMT------FAPRFSPDG-RK-VVMSLSQG--G-----NTDIYTMDLRSGTTTRLTDS- 288 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCcc------cCcEECCCC-CE-EEEEEecC--C-----CceEEEEECCCCceEEccCC-
Confidence 468999999999888776443211 122233332 22 33222110 1 24677788777654433210
Q ss_pred cccccCCCccEE-ECcE-EEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCc-EEEEEc
Q 015502 226 LTGWRAGDESII-CDGV-LYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEK-LVMVGG 302 (405)
Q Consensus 226 ~~~~~~~~~~v~-~~g~-iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~-L~~v~~ 302 (405)
. .....+.+ -+|. |++..... ....|..+|+.+..... +.............-+|+ |+++..
T Consensus 289 ~---~~~~~~~~spDG~~i~f~s~~~------g~~~Iy~~d~~g~~~~~------lt~~~~~~~~~~~SpdG~~ia~~~~ 353 (435)
T PRK05137 289 P---AIDTSPSYSPDGSQIVFESDRS------GSPQLYVMNADGSNPRR------ISFGGGRYSTPVWSPRGDLIAFTKQ 353 (435)
T ss_pred C---CccCceeEcCCCCEEEEEECCC------CCCeEEEEECCCCCeEE------eecCCCcccCeEECCCCCEEEEEEc
Confidence 0 00111222 2443 44443211 12468888887665331 111111111111233554 444442
Q ss_pred cccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC--C---CeEEEEECCCCcEEE
Q 015502 303 IGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG--A---PSLLVYDMNLKQWRW 377 (405)
Q Consensus 303 ~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~---~~~~~Yd~~~~~w~~ 377 (405)
.. ....+.+|+++.+....+.. .. . ...+....+|+.|++.... . ..++++|++.+.-+.
T Consensus 354 ~~------~~~~i~~~d~~~~~~~~lt~-~~---~-----~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~ 418 (435)
T PRK05137 354 GG------GQFSIGVMKPDGSGERILTS-GF---L-----VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNERE 418 (435)
T ss_pred CC------CceEEEEEECCCCceEeccC-CC---C-----CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEE
Confidence 11 11235555554444333221 10 0 0123455677777765431 1 479999999988877
Q ss_pred cc
Q 015502 378 SH 379 (405)
Q Consensus 378 l~ 379 (405)
++
T Consensus 419 l~ 420 (435)
T PRK05137 419 VP 420 (435)
T ss_pred cc
Confidence 76
No 144
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=29.17 E-value=4.3e+02 Score=26.48 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=22.0
Q ss_pred EEecCceEEEEeCCCCceEEEEeCcccceee
Q 015502 131 IASSYGLVCFMDNDSRSELYVCNPISKSWKK 161 (405)
Q Consensus 131 ~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~ 161 (405)
+..+||||++.+. .+.+..|||.++....
T Consensus 183 in~~hgLla~Gt~--~g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 183 INEEHGLLACGTE--DGVVEFWDPRDKSRVG 211 (703)
T ss_pred ecCccceEEeccc--CceEEEecchhhhhhe
Confidence 4567999987543 4788999999987654
No 145
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.23 E-value=7.2e+02 Score=25.81 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=60.8
Q ss_pred ecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015502 133 SSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD 212 (405)
Q Consensus 133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~ 212 (405)
|-+++|+-... ++.+.+|+|-++++..+-.- ..+ ...+.+.|..++| ++.|.- ...+.+++
T Consensus 378 SKn~fLLSSSM--DKTVRLWh~~~~~CL~~F~H-----ndf-VTcVaFnPvDDry--FiSGSL---------D~KvRiWs 438 (712)
T KOG0283|consen 378 SKNNFLLSSSM--DKTVRLWHPGRKECLKVFSH-----NDF-VTCVAFNPVDDRY--FISGSL---------DGKVRLWS 438 (712)
T ss_pred ccCCeeEeccc--cccEEeecCCCcceeeEEec-----CCe-eEEEEecccCCCc--Eeeccc---------ccceEEee
Confidence 45777777665 37899999999998876321 112 2455667877777 333321 12566665
Q ss_pred CC---CCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcch
Q 015502 213 SD---TMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSH 271 (405)
Q Consensus 213 s~---~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~ 271 (405)
.. .--|.... ++ .+++++ +|..-++|...| ....|+....+..
T Consensus 439 I~d~~Vv~W~Dl~-~l-------ITAvcy~PdGk~avIGt~~G--------~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 439 ISDKKVVDWNDLR-DL-------ITAVCYSPDGKGAVIGTFNG--------YCRFYDTEGLKLV 486 (712)
T ss_pred cCcCeeEeehhhh-hh-------heeEEeccCCceEEEEEecc--------EEEEEEccCCeEE
Confidence 43 33465543 21 133333 677777775542 5666777666643
No 146
>PRK04792 tolB translocation protein TolB; Provisional
Probab=27.17 E-value=5.9e+02 Score=24.74 Aligned_cols=187 Identities=13% Similarity=0.113 Sum_probs=88.2
Q ss_pred CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccc
Q 015502 146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEV 225 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~ 225 (405)
...++++|..+++...+...+... ......|++ ++ |++..... + ...+++++..++..+.....
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~------~~~~wSPDG-~~-La~~~~~~--g-----~~~Iy~~dl~tg~~~~lt~~- 304 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGIN------GAPRFSPDG-KK-LALVLSKD--G-----QPEIYVVDIATKALTRITRH- 304 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCc------CCeeECCCC-CE-EEEEEeCC--C-----CeEEEEEECCCCCeEECccC-
Confidence 457999999998877775443211 123334433 22 33322211 1 34788888888776554321
Q ss_pred cccccCCCccEEE-Cc-EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEcc
Q 015502 226 LTGWRAGDESIIC-DG-VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGI 303 (405)
Q Consensus 226 ~~~~~~~~~~v~~-~g-~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~ 303 (405)
......+.+. +| .|++..... ....|..+|+.+.+...+ .............-+|+..++...
T Consensus 305 ---~~~~~~p~wSpDG~~I~f~s~~~------g~~~Iy~~dl~~g~~~~L------t~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 305 ---RAIDTEPSWHPDGKSLIFTSERG------GKPQIYRVNLASGKVSRL------TFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred ---CCCccceEECCCCCEEEEEECCC------CCceEEEEECCCCCEEEE------ecCCCCCcCeeECCCCCEEEEEEe
Confidence 0111122222 44 354443221 124789999987775421 111111111122335544434322
Q ss_pred ccccccCccceEEEEEEe--CceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC--CCeEEEEECCCCcEEEcc
Q 015502 304 GKQDRPDIIKGIGIWVLN--GKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG--APSLLVYDMNLKQWRWSH 379 (405)
Q Consensus 304 ~~~~~~~~~~~~~vw~l~--~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~Yd~~~~~w~~l~ 379 (405)
. .....||.++ .+....+..-. .. .-......|+.|++.... ...+.++|.+.+.=+.++
T Consensus 370 ~-------~g~~~I~~~dl~~g~~~~lt~~~---~d------~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 370 T-------NGKFNIARQDLETGAMQVLTSTR---LD------ESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred c-------CCceEEEEEECCCCCeEEccCCC---CC------CCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 1 1225566555 45544433211 00 012455677777765432 235778888555444443
No 147
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=27.02 E-value=5.4e+02 Score=24.30 Aligned_cols=188 Identities=12% Similarity=0.066 Sum_probs=84.6
Q ss_pred ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccccc
Q 015502 147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVL 226 (405)
Q Consensus 147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~ 226 (405)
..++++|..+++...+....... ......+++ +. +++.... .+ ...+++++..++..+.....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~------~~~~~spDg-~~-l~~~~~~---~~----~~~i~~~d~~~~~~~~l~~~-- 276 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMN------GAPAFSPDG-SK-LAVSLSK---DG----NPDIYVMDLDGKQLTRLTNG-- 276 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCc------cceEECCCC-CE-EEEEECC---CC----CccEEEEECCCCCEEECCCC--
Confidence 57899999998776665432111 123334432 22 3322211 11 24677888877665443211
Q ss_pred ccccCCCccEE-ECc-EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccc
Q 015502 227 TGWRAGDESII-CDG-VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIG 304 (405)
Q Consensus 227 ~~~~~~~~~v~-~~g-~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~ 304 (405)
.. ....+.+ -+| .|++..... ....|..+|+.+.++.. +.............-+|+.+++....
T Consensus 277 ~~--~~~~~~~s~dg~~l~~~s~~~------g~~~iy~~d~~~~~~~~------l~~~~~~~~~~~~spdg~~i~~~~~~ 342 (417)
T TIGR02800 277 PG--IDTEPSWSPDGKSIAFTSDRG------GSPQIYMMDADGGEVRR------LTFRGGYNASPSWSPDGDLIAFVHRE 342 (417)
T ss_pred CC--CCCCEEECCCCCEEEEEECCC------CCceEEEEECCCCCEEE------eecCCCCccCeEECCCCCEEEEEEcc
Confidence 00 0111122 244 455544322 12368888988776532 11111111111223456666555432
Q ss_pred cccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC--CCCeEEEEECCCCcEEEcc
Q 015502 305 KQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY--GAPSLLVYDMNLKQWRWSH 379 (405)
Q Consensus 305 ~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~Yd~~~~~w~~l~ 379 (405)
. ....+.+|+++.+.+..+..-.. . ....+...|+.|++... ....+.+++.+.+.-..++
T Consensus 343 ~-----~~~~i~~~d~~~~~~~~l~~~~~---~------~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~ 405 (417)
T TIGR02800 343 G-----GGFNIAVMDLDGGGERVLTDTGL---D------ESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLP 405 (417)
T ss_pred C-----CceEEEEEeCCCCCeEEccCCCC---C------CCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECC
Confidence 1 11235555555544444332110 0 11234456666666543 2245667776665444443
No 148
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=25.62 E-value=2e+02 Score=26.44 Aligned_cols=59 Identities=14% Similarity=0.044 Sum_probs=41.5
Q ss_pred ccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEcc
Q 015502 229 WRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGI 303 (405)
Q Consensus 229 ~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~ 303 (405)
....+++-.++|++|++.... ..+..+|+++.+++. +...|.. ...|.-. |.+.+|+..
T Consensus 202 LsmPhSPRWhdgrLwvldsgt--------Gev~~vD~~~G~~e~-----Va~vpG~--~rGL~f~-G~llvVgmS 260 (335)
T TIGR03032 202 LSMPHSPRWYQGKLWLLNSGR--------GELGYVDPQAGKFQP-----VAFLPGF--TRGLAFA-GDFAFVGLS 260 (335)
T ss_pred ccCCcCCcEeCCeEEEEECCC--------CEEEEEcCCCCcEEE-----EEECCCC--Cccccee-CCEEEEEec
Confidence 345678889999999997543 589999999888763 3555642 2344444 888888753
No 149
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=25.16 E-value=5.8e+02 Score=25.52 Aligned_cols=111 Identities=12% Similarity=0.108 Sum_probs=55.9
Q ss_pred cCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeC
Q 015502 134 SYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDS 213 (405)
Q Consensus 134 ~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s 213 (405)
.+|-++..+.+ +-++.||||+..+ .+-.+...+. .+.+...+.|-+++-.|+...+ ...|.+||.
T Consensus 60 ~dG~lL~SGSD-D~r~ivWd~~~~K--llhsI~TgHt--aNIFsvKFvP~tnnriv~sgAg----------Dk~i~lfdl 124 (758)
T KOG1310|consen 60 ADGELLASGSD-DTRLIVWDPFEYK--LLHSISTGHT--ANIFSVKFVPYTNNRIVLSGAG----------DKLIKLFDL 124 (758)
T ss_pred CCCCEEeecCC-cceEEeecchhcc--eeeeeecccc--cceeEEeeeccCCCeEEEeccC----------cceEEEEec
Confidence 45666665543 4788999999544 3333322221 2334455556666654443222 247888886
Q ss_pred CCCCccccccccccc---ccC----CCc-cEEECc-EEEeeEEecCCCCCCCccEEEEEECCC
Q 015502 214 DTMMWVTSWKEVLTG---WRA----GDE-SIICDG-VLYFLIYATGGGAPENRHGLISFNLSS 267 (405)
Q Consensus 214 ~~~~W~~~~~~~~~~---~~~----~~~-~v~~~g-~iy~l~~~~~~~~~~~~~~i~~fD~~~ 267 (405)
..-+=+-....+... +.+ -.. ++.-+| ..+|.+... ..|.-||+..
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasED--------GtirQyDiRE 179 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASED--------GTIRQYDIRE 179 (758)
T ss_pred ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCC--------cceeeecccC
Confidence 543222221111111 000 011 223345 677776543 3789999875
No 150
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=24.69 E-value=2.1e+02 Score=22.04 Aligned_cols=66 Identities=11% Similarity=0.050 Sum_probs=40.1
Q ss_pred ceEEEEEeCCCCCcccccccc-cccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEE-ECCCCcchh
Q 015502 205 ELSIHIYDSDTMMWVTSWKEV-LTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISF-NLSSRSSHA 272 (405)
Q Consensus 205 ~~~~~vy~s~~~~W~~~~~~~-~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~f-D~~~~~w~~ 272 (405)
...+..||.++.+|+.+..|. .........-+.++|++-.+...... ......|... |.++++|+.
T Consensus 19 ~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~--~~~~~~iWvLeD~~k~~Wsk 86 (129)
T PF08268_consen 19 NNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQG--EPDSIDIWVLEDYEKQEWSK 86 (129)
T ss_pred CcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCC--CcceEEEEEeeccccceEEE
Confidence 457889999999999876541 11112222345669999888754311 0112344444 677888984
No 151
>PTZ00334 trans-sialidase; Provisional
Probab=24.26 E-value=5.2e+02 Score=27.24 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=50.7
Q ss_pred cEEE-CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeC-CcEEEEEccccccccCcc
Q 015502 235 SIIC-DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLK-EKLVMVGGIGKQDRPDII 312 (405)
Q Consensus 235 ~v~~-~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~-G~L~~v~~~~~~~~~~~~ 312 (405)
+|.. ||.+.+=..-.. .......++.|-..+..|. +.....|..+..+.+++++ |+|+|+..+..
T Consensus 265 GI~medGTLVFPv~a~~--~~g~~vslIiYS~d~g~W~----ls~g~s~~gC~~P~I~EWe~gkLlM~t~C~d------- 331 (780)
T PTZ00334 265 GVQMKDGTLVFPVEGTK--KDGKAVSLIIYSSATESGN----LSKGMSADGCSDPSVVEWKEGKLMMMTACDD------- 331 (780)
T ss_pred eEEecCCeEEEEEEEEc--CCCCEEEEEEEecCCCCeE----EcCCCCCCCCCCCEEEEEcCCeEEEEEEeCC-------
Confidence 4444 777665322110 1122346778877677785 2222234455667899996 99999987642
Q ss_pred ceEEEEEEeC--ceeEE-EeccCh
Q 015502 313 KGIGIWVLNG--KEWQE-VARMPH 333 (405)
Q Consensus 313 ~~~~vw~l~~--~~W~~-v~~i~~ 333 (405)
..-.||+-.+ ..|++ +..++.
T Consensus 332 G~RrVYES~DmG~tWtEAlGTLsr 355 (780)
T PTZ00334 332 GRRRVYESGDKGDSWTEALGTLSR 355 (780)
T ss_pred CCEEEEEECCCCCChhhCCCccce
Confidence 1247888775 57987 355543
No 152
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=23.19 E-value=1e+02 Score=27.38 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHhcCC-hhhhHHHhhcchhhHhhhcChh
Q 015502 43 LILPDDLLERILAYLP-IASIFRAGCVCRRWHEIVSSRR 80 (405)
Q Consensus 43 ~~LP~dll~~Il~~Lp-~~~l~r~r~VcK~W~~~i~~~~ 80 (405)
.+||.+++.+||.||| =.||....-|--.-..++.+..
T Consensus 203 ~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~ 241 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERR 241 (332)
T ss_pred ccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHH
Confidence 3899999999999999 7888888777665555555443
No 153
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=22.59 E-value=5.9e+02 Score=23.16 Aligned_cols=65 Identities=9% Similarity=0.079 Sum_probs=43.2
Q ss_pred ceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEEC--CCCcEEEccCCCC
Q 015502 313 KGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDM--NLKQWRWSHKCPV 383 (405)
Q Consensus 313 ~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~--~~~~w~~l~~~p~ 383 (405)
..+.+|+++. ..++.+..++... ...-+.+...|+.+|+.+.....+.+|+. +++.++.+.....
T Consensus 250 ~~I~v~~i~~~~~~~~~~~~~~~~~------~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~ 318 (330)
T PRK11028 250 SLISVFSVSEDGSVLSFEGHQPTET------QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAV 318 (330)
T ss_pred CeEEEEEEeCCCCeEEEeEEEeccc------cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcccccc
Confidence 5699999974 4566666554321 11234566789999998765678888865 5678888765543
No 154
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=22.56 E-value=1.5e+02 Score=23.47 Aligned_cols=48 Identities=17% Similarity=0.382 Sum_probs=27.2
Q ss_pred eeCCCEEEEEeCCCCeEEEEECCCC--cEEEccCCCCCCCCcccceeeeeeceec
Q 015502 349 SGTDDLIYIQSYGAPSLLVYDMNLK--QWRWSHKCPVTKRFPLQLFTGFCFEPRL 401 (405)
Q Consensus 349 ~~~~~~i~~~~~~~~~~~~Yd~~~~--~w~~l~~~p~~~~~~~~~~~~~~~~p~~ 401 (405)
..+-++||+.+.++..+..|.+..+ ....+...... .-..|++|-|.-
T Consensus 19 D~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~-----~~~~G~~~lPK~ 68 (136)
T PF08954_consen 19 DEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSP-----EPQKGFAFLPKR 68 (136)
T ss_dssp -TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--S-----S--SEEEE--GG
T ss_pred cCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccccC-----CCeEeeEecCcc
Confidence 4467889999888889999999888 56665433221 225689988863
No 155
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.12 E-value=2.3e+02 Score=30.73 Aligned_cols=74 Identities=19% Similarity=0.300 Sum_probs=40.8
Q ss_pred cccCceEEe---CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC
Q 015502 285 LTCGRLMNL---KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG 361 (405)
Q Consensus 285 ~~~~~l~~~---~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 361 (405)
....-++.+ .|+|++-|. ...+.||+.+.+. ++..||..--.. -..+.+.-.++-+++.+..
T Consensus 1165 r~~~~v~dWqQ~~G~Ll~tGd---------~r~IRIWDa~~E~--~~~diP~~s~t~----vTaLS~~~~~gn~i~AGfa 1229 (1387)
T KOG1517|consen 1165 RGTGLVVDWQQQSGHLLVTGD---------VRSIRIWDAHKEQ--VVADIPYGSSTL----VTALSADLVHGNIIAAGFA 1229 (1387)
T ss_pred CCCCeeeehhhhCCeEEecCC---------eeEEEEEecccce--eEeecccCCCcc----ceeecccccCCceEEEeec
Confidence 333444544 577776654 4679999888653 556676431110 0112222223344455556
Q ss_pred CCeEEEEECCCC
Q 015502 362 APSLLVYDMNLK 373 (405)
Q Consensus 362 ~~~~~~Yd~~~~ 373 (405)
++.+-+||.+.-
T Consensus 1230 DGsvRvyD~R~a 1241 (1387)
T KOG1517|consen 1230 DGSVRVYDRRMA 1241 (1387)
T ss_pred CCceEEeecccC
Confidence 778888887643
No 156
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.95 E-value=1e+03 Score=25.63 Aligned_cols=78 Identities=12% Similarity=0.163 Sum_probs=42.1
Q ss_pred cEEEEEECCCCcchhhhcccccccCCccccCceEEeC--CcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhH
Q 015502 258 HGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLK--EKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKF 335 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~--G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~ 335 (405)
..|-++|....+-- -..-..-....++..+ ..||.+++. ..+.||.++.++
T Consensus 272 ksirVwDm~kRt~v-------~tfrrendRFW~laahP~lNLfAAgHD---------sGm~VFkleREr----------- 324 (1202)
T KOG0292|consen 272 KSIRVWDMTKRTSV-------QTFRRENDRFWILAAHPELNLFAAGHD---------SGMIVFKLERER----------- 324 (1202)
T ss_pred ccEEEEecccccce-------eeeeccCCeEEEEEecCCcceeeeecC---------CceEEEEEcccC-----------
Confidence 47888998776511 1111111122344444 677777753 348888887432
Q ss_pred HhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCc
Q 015502 336 FQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQ 374 (405)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~ 374 (405)
. +.+..+|.+|+.. ++.+..||+.+.+
T Consensus 325 --------p--a~~v~~n~LfYvk--d~~i~~~d~~t~~ 351 (1202)
T KOG0292|consen 325 --------P--AYAVNGNGLFYVK--DRFIRSYDLRTQK 351 (1202)
T ss_pred --------c--eEEEcCCEEEEEc--cceEEeeeccccc
Confidence 1 1222455555543 5577777777753
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=21.59 E-value=2.7e+02 Score=27.31 Aligned_cols=53 Identities=13% Similarity=0.259 Sum_probs=36.2
Q ss_pred ceEEEEEEeC----ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcE
Q 015502 313 KGIGIWVLNG----KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQW 375 (405)
Q Consensus 313 ~~~~vw~l~~----~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w 375 (405)
..+.+|+.+. ..|.++++-|.. -+++...+..|++.-.-+.++..||...++-
T Consensus 187 G~VtlwDv~g~sp~~~~~~~HsAP~~----------gicfspsne~l~vsVG~Dkki~~yD~~s~~s 243 (673)
T KOG4378|consen 187 GAVTLWDVQGMSPIFHASEAHSAPCR----------GICFSPSNEALLVSVGYDKKINIYDIRSQAS 243 (673)
T ss_pred CeEEEEeccCCCcccchhhhccCCcC----------cceecCCccceEEEecccceEEEeecccccc
Confidence 4599999985 379998887752 1234455666666555567888888886643
No 158
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=21.50 E-value=1e+02 Score=23.22 Aligned_cols=28 Identities=21% Similarity=0.042 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHhcCChhhhHHHhhcch
Q 015502 43 LILPDDLLERILAYLPIASIFRAGCVCR 70 (405)
Q Consensus 43 ~~LP~dll~~Il~~Lp~~~l~r~r~VcK 70 (405)
..+|.+|+.-||.++.+..|.++-.-|.
T Consensus 5 G~~py~ll~piL~~~~~~QL~~iE~~np 32 (109)
T PF06881_consen 5 GDVPYHLLRPILEKCSPEQLRRIEDNNP 32 (109)
T ss_pred CCCCHHHHHHHHccCCHHHHHHHHHhCC
Confidence 3799999999999999999998877663
No 159
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=20.50 E-value=3.4e+02 Score=20.11 Aligned_cols=40 Identities=23% Similarity=0.453 Sum_probs=28.8
Q ss_pred ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEe
Q 015502 147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVK 193 (405)
Q Consensus 147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~ 193 (405)
-++++.||.+++|.... .....+.+..|+..+.|.|....
T Consensus 9 a~v~~~~~~~~~W~~~~-------~~~g~v~~~~d~~~~~y~i~~~~ 48 (104)
T cd00837 9 AQVYTADPSTGKWVPAS-------GGTGAVSLVKDSTRNTYRIRGVD 48 (104)
T ss_pred EEEEEECCCCCceEECC-------CCeEEEEEEEECCCCEEEEEEEe
Confidence 56889999999999752 11345677778877778777654
No 160
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=20.31 E-value=6e+02 Score=22.41 Aligned_cols=133 Identities=10% Similarity=0.097 Sum_probs=69.6
Q ss_pred CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCC----cccc
Q 015502 146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMM----WVTS 221 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~----W~~~ 221 (405)
++.+.+|||..+....--.- + ..-.+..+...++-|+...|+ ...+.+||..+++ |+-.
T Consensus 38 drtvrLWNp~rg~liktYsg---h----G~EVlD~~~s~Dnskf~s~Gg----------Dk~v~vwDV~TGkv~Rr~rgH 100 (307)
T KOG0316|consen 38 DRTVRLWNPLRGALIKTYSG---H----GHEVLDAALSSDNSKFASCGG----------DKAVQVWDVNTGKVDRRFRGH 100 (307)
T ss_pred CceEEeecccccceeeeecC---C----CceeeeccccccccccccCCC----------CceEEEEEcccCeeeeecccc
Confidence 47899999999877653221 1 111233333334445555443 2488999988765 3332
Q ss_pred cccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcc-ccCceEEeCCcEEEE
Q 015502 222 WKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCAL-TCGRLMNLKEKLVMV 300 (405)
Q Consensus 222 ~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~-~~~~l~~~~G~L~~v 300 (405)
.. ..+.|-+|..--++..- .....+-++|-....++. ++.-... ....-+...+...+.
T Consensus 101 ~a--------qVNtV~fNeesSVv~Sg------sfD~s~r~wDCRS~s~eP------iQildea~D~V~Si~v~~heIva 160 (307)
T KOG0316|consen 101 LA--------QVNTVRFNEESSVVASG------SFDSSVRLWDCRSRSFEP------IQILDEAKDGVSSIDVAEHEIVA 160 (307)
T ss_pred cc--------eeeEEEecCcceEEEec------cccceeEEEEcccCCCCc------cchhhhhcCceeEEEecccEEEe
Confidence 21 12344444332222211 123579999998888652 3322221 122233455666666
Q ss_pred EccccccccCccceEEEEEEeCc
Q 015502 301 GGIGKQDRPDIIKGIGIWVLNGK 323 (405)
Q Consensus 301 ~~~~~~~~~~~~~~~~vw~l~~~ 323 (405)
+..+ .++..|++..+
T Consensus 161 GS~D--------GtvRtydiR~G 175 (307)
T KOG0316|consen 161 GSVD--------GTVRTYDIRKG 175 (307)
T ss_pred eccC--------CcEEEEEeecc
Confidence 6543 34778877654
Done!