BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015503
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9C|A Chain A, Proteolytic Fragment Of Crm1 Spanning Six C-Terminal Heat
Repeats
pdb|1W9C|B Chain B, Proteolytic Fragment Of Crm1 Spanning Six C-Terminal Heat
Repeats
Length = 321
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 184 LFECGVGIFTKTAAEYDRRRENFFKELEIVFADVVMAIIA 223
+FEC + + K EY R NFF L+ V + A +A
Sbjct: 120 VFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLA 159
>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|D Chain D, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3NBY|A Chain A, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|D Chain D, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC1|A Chain A, Crystal Structure Of The Crm1-Rangtp Complex
Length = 1073
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 184 LFECGVGIFTKTAAEYDRRRENFFKELEIVFADVVMAIIA 223
+FEC + + K EY R NFF L+ V + A +A
Sbjct: 828 VFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLA 867
>pdb|4AHP|A Chain A, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|B Chain B, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|C Chain C, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|D Chain D, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
Length = 298
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 287 AVGTTSSLVGTAVTNALINARKAVDKSSEGEVENV--------PILSTSVAYGVYMAVSS 338
A+G+T ++ G ARK D + +G+++ I+ T ++ G+Y +
Sbjct: 210 AIGSTYNVNGR-------RARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKE 262
Query: 339 NLRYQVLAGVIEQRILEPLLHQHKLILSAIC 369
LR++ + + +R +P H+ L +
Sbjct: 263 ILRHRGIDAGLPKRPFKPFNEAHRQTLDQLI 293
>pdb|4AHQ|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
Length = 298
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 287 AVGTTSSLVGTAVTNALINARKAVDKSSEGEVENV--------PILSTSVAYGVYMAVSS 338
A+G+T ++ G ARK D + +G+++ I+ T ++ G+Y +
Sbjct: 210 AIGSTYNVNGR-------RARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKE 262
Query: 339 NLRYQVLAGVIEQRILEPLLHQHKLILSAIC 369
LR++ + + +R +P H+ L +
Sbjct: 263 ILRHRGIDAGLPKRPFKPFNEAHRQTLDQLI 293
>pdb|4AH7|A Chain A, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|B Chain B, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|C Chain C, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|D Chain D, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AMA|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
Length = 298
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 287 AVGTTSSLVGTAVTNALINARKAVDKSSEGEVENV--------PILSTSVAYGVYMAVSS 338
A+G+T ++ G ARK D + +G+++ I+ T ++ G+Y +
Sbjct: 210 AIGSTYNVNGR-------RARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKE 262
Query: 339 NLRYQVLAGVIEQRILEPLLHQHKLILSAIC 369
LR++ + + +R +P H+ L +
Sbjct: 263 ILRHRGIDAGLPKRPFKPFNEAHRQTLDQLI 293
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 184 LFECGVGIFTKTAAEYDRRRENFFKELEIVFADVVMAIIA 223
+FEC + + K EY R NFF L+ V + A +A
Sbjct: 826 VFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLA 865
>pdb|4AHO|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
Length = 299
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 287 AVGTTSSLVGTAVTNALINARKAVDKSSEGEVENV--------PILSTSVAYGVYMAVSS 338
A+G+T ++ G ARK D + +G+++ I+ T ++ G+Y +
Sbjct: 211 AIGSTYNVNGR-------RARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKE 263
Query: 339 NLRYQVLAGVIEQRILEPLLHQHKLILSAIC 369
LR++ + + +R +P H+ L +
Sbjct: 264 ILRHRGIDAGLPKRPFKPFNEAHRQTLDQLI 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,470,646
Number of Sequences: 62578
Number of extensions: 296022
Number of successful extensions: 673
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 8
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)