Query 015503
Match_columns 405
No_of_seqs 110 out of 141
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 13:45:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qyh_A CO-type nitrIle hydrata 56.8 7.7 0.00026 36.8 3.6 44 137-180 47-98 (226)
2 3hht_A NitrIle hydratase alpha 56.0 8.3 0.00029 36.4 3.6 46 137-182 36-89 (216)
3 1ugp_A NitrIle hydratase alpha 38.5 24 0.00083 33.0 3.7 46 137-182 27-80 (203)
4 2p0t_A UPF0307 protein pspto_4 38.2 66 0.0023 29.2 6.6 67 110-176 15-118 (176)
5 3a8g_A NitrIle hydratase subun 35.6 17 0.00058 34.1 2.3 45 137-181 30-82 (207)
6 2zzd_C Thiocyanate hydrolase s 30.3 38 0.0013 32.5 3.7 43 137-179 38-87 (243)
7 4fm4_A NitrIle hydratase alpha 28.0 32 0.0011 32.3 2.7 41 138-178 21-69 (209)
8 2hku_A A putative transcriptio 20.1 3.7E+02 0.013 22.1 9.8 20 215-234 165-184 (215)
9 3u6r_H Antibody 1:7 (heavy cha 17.7 27 0.00091 29.6 0.0 19 85-103 129-147 (149)
10 1g3p_A G3P, minor coat protein 17.3 30 0.001 32.0 0.2 23 72-94 65-87 (217)
No 1
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=56.84 E-value=7.7 Score=36.82 Aligned_cols=44 Identities=25% Similarity=0.225 Sum_probs=31.9
Q ss_pred HHHcCCCCHHHHHHHHH-hhh--hhhh--HHHHh---hhchhhhhhcchhhH
Q 015503 137 AIKDGRIPGAVLSRYFE-LEK--SGLF--KWLMQ---FGGFKERLLADDLFL 180 (405)
Q Consensus 137 A~e~G~vs~~~L~rfl~-l~~--~p~~--~~L~~---~~gfR~RlLADP~Fl 180 (405)
-+|.|.|+++.+.++++ ++. .|.. +.+.+ -+.||.|||+||.=.
T Consensus 47 L~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~Dp~FK~rLL~D~~aA 98 (226)
T 3qyh_A 47 LIEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVDPAYKARLLADGTAG 98 (226)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhCCHHHHHHHHHCHHHH
Confidence 36899999999999999 433 3532 12222 489999999999743
No 2
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=55.99 E-value=8.3 Score=36.38 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=33.1
Q ss_pred HHHcCCCCHHHHHHHHHhh-h--hhhh--HHHHh---hhchhhhhhcchhhHHH
Q 015503 137 AIKDGRIPGAVLSRYFELE-K--SGLF--KWLMQ---FGGFKERLLADDLFLAK 182 (405)
Q Consensus 137 A~e~G~vs~~~L~rfl~l~-~--~p~~--~~L~~---~~gfR~RlLADP~FlfK 182 (405)
-+|.|.|+++.+.++.+.- . .|.. +.+.+ -+.||.|||+||.=..|
T Consensus 36 l~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~Dp~FK~rLL~Dp~aAi~ 89 (216)
T 3hht_A 36 LIEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPAFKQRLLEDSETVLR 89 (216)
T ss_dssp HHHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHCHHHHHHHHHCHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHHHHHH
Confidence 3689999999999999863 2 3532 12222 48999999999974443
No 3
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=38.45 E-value=24 Score=32.97 Aligned_cols=46 Identities=28% Similarity=0.368 Sum_probs=32.9
Q ss_pred HHHcCCCCHHHHHHHHHhhhh---hhh--HHHHh---hhchhhhhhcchhhHHH
Q 015503 137 AIKDGRIPGAVLSRYFELEKS---GLF--KWLMQ---FGGFKERLLADDLFLAK 182 (405)
Q Consensus 137 A~e~G~vs~~~L~rfl~l~~~---p~~--~~L~~---~~gfR~RlLADP~FlfK 182 (405)
-+|.|.|+++.+.++.+.-.. |.. +.+.+ -|.||.|||+|+.=..|
T Consensus 27 L~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~Dp~fk~~Ll~d~~aA~~ 80 (203)
T 1ugp_A 27 LIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGTEACK 80 (203)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCCHHHHHHHHhChHHHHH
Confidence 468999999999999986444 421 12222 48999999999975443
No 4
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=38.24 E-value=66 Score=29.22 Aligned_cols=67 Identities=16% Similarity=0.286 Sum_probs=35.2
Q ss_pred ccCHHHH---HHHHHHHhhccccch----------HHHHHHHHc-CCCCH-HHHHHHHHhhh--------hhh-------
Q 015503 110 EKNREEA---LIVLAEAKRSMESLP----------KDLAAAIKD-GRIPG-AVLSRYFELEK--------SGL------- 159 (405)
Q Consensus 110 ~~~R~ei---~~Vl~e~grt~~sLP----------~Dl~~A~e~-G~vs~-~~L~rfl~l~~--------~p~------- 159 (405)
+..|.++ ...|+++|..+.+|| .+|.+|+.. -+|++ +-..|=+.+=+ -|+
T Consensus 15 ~~SKSq~KRe~~~lq~LG~eL~~Ls~~ql~klpL~e~L~~Ai~~a~ri~~~earRRQlqyIGKLmR~~D~e~I~~al~~~ 94 (176)
T 2p0t_A 15 EKSKTQVKRELHALVDLGERLTTLKADVLAKLPLTDALRKALAEAPKHTANIARKRHILFIGKLMRDQDQEAILVLLDQL 94 (176)
T ss_dssp ----------CHHHHHHHHHHTTSCHHHHTTSCCCHHHHHHHHHGGGCCSHHHHHHHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCHHHHhcCCCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3344444 367888998887654 577888644 34653 24444333221 121
Q ss_pred -------hHHHHhhhchhhhhhcc
Q 015503 160 -------FKWLMQFGGFKERLLAD 176 (405)
Q Consensus 160 -------~~~L~~~~gfR~RlLAD 176 (405)
...+++.--||+||++|
T Consensus 95 ~~~~~~~~~~~h~lE~wRdrLi~~ 118 (176)
T 2p0t_A 95 DASTRQYNERFHNLERWRDRLIAG 118 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hcccHHHHHHHHHHHHHHHHHHhC
Confidence 12334457799999986
No 5
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=35.61 E-value=17 Score=34.10 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=32.1
Q ss_pred HHHcCCCCHHHHHHHHHhhhh---hhh--HHHHh---hhchhhhhhcchhhHH
Q 015503 137 AIKDGRIPGAVLSRYFELEKS---GLF--KWLMQ---FGGFKERLLADDLFLA 181 (405)
Q Consensus 137 A~e~G~vs~~~L~rfl~l~~~---p~~--~~L~~---~~gfR~RlLADP~Flf 181 (405)
-+|.|+|+++.+.++.+.-.. |.. +-+.+ -+.||.|||+|+.=..
T Consensus 30 l~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~DP~Fk~rLL~D~~aAi 82 (207)
T 3a8g_A 30 LDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTAAV 82 (207)
T ss_dssp HHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCCHHHHHHHHHCHHHHH
Confidence 468999999999999986443 421 12222 4899999999997443
No 6
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=30.26 E-value=38 Score=32.46 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=30.8
Q ss_pred HHHcCCCCHHHHHHHHHhhhh--hhh--HHHHh---hhchhhhhhcchhh
Q 015503 137 AIKDGRIPGAVLSRYFELEKS--GLF--KWLMQ---FGGFKERLLADDLF 179 (405)
Q Consensus 137 A~e~G~vs~~~L~rfl~l~~~--p~~--~~L~~---~~gfR~RlLADP~F 179 (405)
.+|.|+|+++.+.++.+.-.. |.. +.+.| -|.||+|||+|+.=
T Consensus 38 L~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~DP~fk~~Ll~d~~a 87 (243)
T 2zzd_C 38 AIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVE 87 (243)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHCHHHHHHHHHCHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecCCHHHHHHHHHChHH
Confidence 468999999999999986332 421 12222 48899999999863
No 7
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=28.05 E-value=32 Score=32.34 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=29.4
Q ss_pred HHcCCCCHHHHHHHHHhhh-h--hhh--HHHHh---hhchhhhhhcchh
Q 015503 138 IKDGRIPGAVLSRYFELEK-S--GLF--KWLMQ---FGGFKERLLADDL 178 (405)
Q Consensus 138 ~e~G~vs~~~L~rfl~l~~-~--p~~--~~L~~---~~gfR~RlLADP~ 178 (405)
+|.|+|.++.+.+|.+.-. . |.. +.+.+ -+.||+|||+|+.
T Consensus 21 ~eKGli~~~~id~~~~~~~~~~gP~~GA~vVArAW~Dp~Fk~~Ll~D~~ 69 (209)
T 4fm4_A 21 KELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWTDPVFKAQLLSEGV 69 (209)
T ss_dssp HHTTSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccchhHHHHHhCCHHHHHHHHHHHH
Confidence 5789999999999998433 2 421 12222 4899999999994
No 8
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.07 E-value=3.7e+02 Score=22.09 Aligned_cols=20 Identities=5% Similarity=0.062 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhhhccccc
Q 015503 215 ADVVMAIIADFMLVYLPAPT 234 (405)
Q Consensus 215 sdvv~g~i~nfaLV~LLAPt 234 (405)
+.++.+.+.-+.+.|++.|.
T Consensus 165 a~~~~~~~~G~~~~~~~~~~ 184 (215)
T 2hku_A 165 SKAFWSAIFGLVIQKTATGE 184 (215)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHcCc
Confidence 55556666666666665553
No 9
>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=17.72 E-value=27 Score=29.64 Aligned_cols=19 Identities=53% Similarity=1.150 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 015503 85 NNNGGSGGGGGGNNNDGDG 103 (405)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~ 103 (405)
...|+.||||.|++|-|+|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~ 147 (149)
T 3u6r_H 129 SGTGGSGGGGSGGGGSGGG 147 (149)
T ss_dssp -------------------
T ss_pred cCCCcCCCCCCCCCCCCCC
No 10
>1g3p_A G3P, minor coat protein; filamentous bacteriophage, phage display, selectively infective phages, viral protein; HET: TRO; 1.46A {Enterobacteria phage M13} SCOP: b.37.1.1 b.37.1.1 PDB: 2g3p_A 3dgs_A 3knq_A 1fgp_A
Probab=17.31 E-value=30 Score=32.04 Aligned_cols=23 Identities=35% Similarity=0.787 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCC
Q 015503 72 PTSSGGGGGDDNYNNNGGSGGGG 94 (405)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~ 94 (405)
|...||+.++||..|||+.|+++
T Consensus 65 Ps~~GGgs~GdnSsGGgs~g~~~ 87 (217)
T 1g3p_A 65 PENEGGGSEGGGSEGGGSEGGGT 87 (217)
T ss_dssp CC---------------------
T ss_pred ccCCCCCcCCCCCCCCCCCCCCC
Done!