Query 015503
Match_columns 405
No_of_seqs 110 out of 141
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 13:46:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015503.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015503hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ugpa_ d.149.1.1 (A:) Cobalt- 61.2 3 0.00022 36.9 3.8 50 137-189 27-84 (203)
2 d1v29a_ d.149.1.1 (A:) Cobalt- 56.0 3.9 0.00028 36.1 3.6 42 137-178 26-75 (203)
3 d2qdya1 d.149.1.1 (A:10-206) I 49.0 4 0.00029 35.9 2.5 41 138-178 22-70 (197)
4 d1b0na1 a.34.1.1 (A:74-108) Si 34.2 17 0.0012 23.7 3.1 23 133-156 8-30 (35)
5 d1x3zb1 a.189.1.1 (B:253-309) 32.0 10 0.00074 26.9 1.9 24 164-187 33-56 (57)
6 d1bh9b_ a.22.1.3 (B:) TAF(II)2 19.3 34 0.0025 26.1 2.9 26 114-139 55-80 (89)
7 d1qusa_ d.2.1.6 (A:) 36 kDa so 16.7 38 0.0027 31.0 3.1 59 132-211 100-158 (322)
8 d2hyja2 a.121.1.1 (A:83-200) P 15.0 1.3E+02 0.0097 21.7 5.5 61 110-181 41-105 (118)
9 d1wdcc_ a.39.1.5 (C:) Myosin R 13.9 1.6E+02 0.012 21.9 5.9 50 110-159 60-115 (152)
10 d1vz0a1 a.4.14.1 (A:116-208) P 12.5 72 0.0052 23.8 3.2 30 126-155 41-70 (93)
No 1
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=61.20 E-value=3 Score=36.87 Aligned_cols=50 Identities=30% Similarity=0.439 Sum_probs=34.8
Q ss_pred HHHcCCCCHHHHHHHHHh-hh--hhhh--HHHHh---hhchhhhhhcchhhHHHHHHHHhh
Q 015503 137 AIKDGRIPGAVLSRYFEL-EK--SGLF--KWLMQ---FGGFKERLLADDLFLAKVLFECGV 189 (405)
Q Consensus 137 A~e~G~vs~~~L~rfl~l-~~--~p~~--~~L~~---~~gfR~RlLADP~FlfKl~iE~~I 189 (405)
-+|.|+|+++.+.++++. +. .|.. +.+.| -+.||.|||+|+. +.+-|.++
T Consensus 27 LieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~Dp~FK~rLL~D~~---aA~~e~G~ 84 (203)
T d1ugpa_ 27 LIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGT---EACKELGI 84 (203)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHH---HHHHTTTC
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCCHHHHHHHHHHHH---HHHHHcCC
Confidence 468999999999999994 43 3632 12222 4899999999986 44445444
No 2
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=56.02 E-value=3.9 Score=36.11 Aligned_cols=42 Identities=24% Similarity=0.304 Sum_probs=31.4
Q ss_pred HHHcCCCCHHHHHHHHH-hhhh--hhh--HHHHh---hhchhhhhhcchh
Q 015503 137 AIKDGRIPGAVLSRYFE-LEKS--GLF--KWLMQ---FGGFKERLLADDL 178 (405)
Q Consensus 137 A~e~G~vs~~~L~rfl~-l~~~--p~~--~~L~~---~~gfR~RlLADP~ 178 (405)
-+|.|+|+++.+.+.++ ++.+ |.. +.+.| -+.||+|||+|+.
T Consensus 26 LieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~Dp~FK~rLL~D~~ 75 (203)
T d1v29a_ 26 LIEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPEFKQRLLEDPE 75 (203)
T ss_dssp HHHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTCHHHHHHHHHSHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHH
Confidence 36899999999999998 4443 532 22222 4899999999986
No 3
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=49.04 E-value=4 Score=35.87 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=30.6
Q ss_pred HHcCCCCHHHHHHHHHh-hhh--hhh--HHHHh---hhchhhhhhcchh
Q 015503 138 IKDGRIPGAVLSRYFEL-EKS--GLF--KWLMQ---FGGFKERLLADDL 178 (405)
Q Consensus 138 ~e~G~vs~~~L~rfl~l-~~~--p~~--~~L~~---~~gfR~RlLADP~ 178 (405)
+|.|+|+++.+.++++. +.+ |.. +.+.+ -+.||.|||+||.
T Consensus 22 ieKGli~~~~vd~~ie~~e~~vgP~nGArvVAkAW~Dp~FK~rLL~D~~ 70 (197)
T d2qdya1 22 DGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGT 70 (197)
T ss_dssp HTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHhhccCCcchHHHHHHHhCCHHHHHHHHHHHH
Confidence 48899999999999984 544 532 12222 4899999999996
No 4
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=34.19 E-value=17 Score=23.65 Aligned_cols=23 Identities=13% Similarity=0.384 Sum_probs=18.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHhhh
Q 015503 133 DLAAAIKDGRIPGAVLSRYFELEK 156 (405)
Q Consensus 133 Dl~~A~e~G~vs~~~L~rfl~l~~ 156 (405)
-.++|.+.| ||++|...||+.++
T Consensus 8 lVkeAM~SG-vSK~QFrEflef~k 30 (35)
T d1b0na1 8 LVRDAMTSG-VSKKQFREFLDYQK 30 (35)
T ss_dssp HHHHHHHSC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHH
Confidence 356676665 99999999999875
No 5
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.95 E-value=10 Score=26.94 Aligned_cols=24 Identities=17% Similarity=0.458 Sum_probs=20.3
Q ss_pred HhhhchhhhhhcchhhHHHHHHHH
Q 015503 164 MQFGGFKERLLADDLFLAKVLFEC 187 (405)
Q Consensus 164 ~~~~gfR~RlLADP~FlfKl~iE~ 187 (405)
.|+|-+|+.+++||.-...++.|-
T Consensus 33 ~ryp~lre~im~npe~fismllea 56 (57)
T d1x3zb1 33 ARYPQLREHIMANPEVFVSMLLEA 56 (57)
T ss_dssp TTCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HhhHHHHHHHHhCHHHHHHHHHhh
Confidence 468999999999999877777763
No 6
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.32 E-value=34 Score=26.13 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHH
Q 015503 114 EEALIVLAEAKRSMESLPKDLAAAIK 139 (405)
Q Consensus 114 ~ei~~Vl~e~grt~~sLP~Dl~~A~e 139 (405)
+++..|+.||+.+.-=.|..|++|+.
T Consensus 55 E~A~~V~~~~~e~~PL~P~HireA~r 80 (89)
T d1bh9b_ 55 EEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp HHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCcHHHHHHHH
Confidence 56678999999998889999999975
No 7
>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35 {Escherichia coli [TaxId: 562]}
Probab=16.69 E-value=38 Score=31.01 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHhhhhhhhHHHHhhhchhhhhhcchhhHHHHHHHHhhhhhhhhhhhhhccCcchHhHHH
Q 015503 132 KDLAAAIKDGRIPGAVLSRYFELEKSGLFKWLMQFGGFKERLLADDLFLAKVLFECGVGIFTKTAAEYDRRRENFFKELE 211 (405)
Q Consensus 132 ~Dl~~A~e~G~vs~~~L~rfl~l~~~p~~~~L~~~~gfR~RlLADP~FlfKl~iE~~I~i~~~~~aE~~~Rge~F~~ElD 211 (405)
.-|.++-+.-+|++++++.++-+|.+ +.+-.-.+ -+++.-+++..++.+|.+-|.+||-
T Consensus 100 ~~l~~~e~~yGV~~~ii~aiwgvET~-yG~~~G~~--------------------~v~~aLaTLAf~~~rR~~ff~~EL~ 158 (322)
T d1qusa_ 100 DALNRAWQVYGVPPEIIVGIIGVETR-WGRVMGKT--------------------RILDALATLSFNYPRRAEYFSGELE 158 (322)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHT-TTTCCCCE--------------------EHHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhhhc-hhhhcCCC--------------------cchhhhhhhhhcccchhhhhhHHHH
Confidence 34566667788999999999998887 21111111 1566677888899888777888986
No 8
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=14.96 E-value=1.3e+02 Score=21.68 Aligned_cols=61 Identities=18% Similarity=0.110 Sum_probs=39.7
Q ss_pred ccCHHHHHHHHHHHhhccccchHHHHHHHHcCCCC----HHHHHHHHHhhhhhhhHHHHhhhchhhhhhcchhhHH
Q 015503 110 EKNREEALIVLAEAKRSMESLPKDLAAAIKDGRIP----GAVLSRYFELEKSGLFKWLMQFGGFKERLLADDLFLA 181 (405)
Q Consensus 110 ~~~R~ei~~Vl~e~grt~~sLP~Dl~~A~e~G~vs----~~~L~rfl~l~~~p~~~~L~~~~gfR~RlLADP~Flf 181 (405)
+.=|+.+.+.+++|-+. |=.-+++|.+.|.++ ++++-+++-..-. +.+ +..|+.-||..+-
T Consensus 41 ~~ir~~l~~~~~~~~~~---l~~~l~~a~~~G~i~~~~d~~~lA~~l~~~~~---G~~-----~~~r~~~d~~~l~ 105 (118)
T d2hyja2 41 GRVRDAVAEVWSRWREQ---LRADLTAAVDKGELPAGFDVEQALFEIVAAGL---ALN-----AAMQLQHDRTAAD 105 (118)
T ss_dssp THHHHHHHHHHHHHHHH---HHHHHHHHHHTTSSCTTCCHHHHHHHHHHHHH---HHH-----HHHHHHCCTTHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH---HHH-----HHHHHhCChHHHH
Confidence 45577788888888754 446688999999986 5555555432221 111 4567888887663
No 9
>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=13.89 E-value=1.6e+02 Score=21.86 Aligned_cols=50 Identities=24% Similarity=0.137 Sum_probs=38.1
Q ss_pred ccCHHHHHHHHHHHhhccccchHHHHHHHHc------CCCCHHHHHHHHHhhhhhh
Q 015503 110 EKNREEALIVLAEAKRSMESLPKDLAAAIKD------GRIPGAVLSRYFELEKSGL 159 (405)
Q Consensus 110 ~~~R~ei~~Vl~e~grt~~sLP~Dl~~A~e~------G~vs~~~L~rfl~l~~~p~ 159 (405)
.-+.++...+++..-+....-..++++|.+. |.|+...|.+-+.--+.++
T Consensus 60 ~i~~~eFl~~~~~~~~~~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~~g~~l 115 (152)
T d1wdcc_ 60 SLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERL 115 (152)
T ss_dssp EECHHHHHHHHHHHTTSCCCCHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSSSCC
T ss_pred cccccccccccccccccchhHHHhhhhhhhccccccCccchHHHHHHHHHHcCCCC
Confidence 4567788888887776666777889999864 8899999998887655553
No 10
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=12.53 E-value=72 Score=23.77 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=22.4
Q ss_pred ccccchHHHHHHHHcCCCCHHHHHHHHHhh
Q 015503 126 SMESLPKDLAAAIKDGRIPGAVLSRYFELE 155 (405)
Q Consensus 126 t~~sLP~Dl~~A~e~G~vs~~~L~rfl~l~ 155 (405)
++.+||.+++++++.|.|+-..-...+.+.
T Consensus 41 rLl~L~~~v~~~l~~g~Is~ghAr~L~~l~ 70 (93)
T d1vz0a1 41 RLLQLPPEALEALERGEITAGHARALLMLE 70 (93)
T ss_dssp HGGGSCHHHHHHHHTTSSCHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHcCCccHHHHHHHHCCC
Confidence 356889999999999988877665555543
Done!