Query 015504
Match_columns 405
No_of_seqs 243 out of 2194
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:56:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2765 Predicted membrane pro 100.0 1.9E-53 4E-58 394.5 28.8 375 1-392 8-399 (416)
2 PLN00411 nodulin MtN21 family 100.0 2.3E-28 5E-33 237.8 28.9 305 5-389 11-334 (358)
3 PF06027 DUF914: Eukaryotic pr 100.0 5.8E-28 1.3E-32 230.4 26.3 226 151-388 85-310 (334)
4 PRK11272 putative DMT superfam 100.0 5.2E-26 1.1E-30 217.1 30.1 285 1-386 1-288 (292)
5 PRK11453 O-acetylserine/cystei 100.0 5.3E-26 1.2E-30 217.7 28.0 215 158-386 72-290 (299)
6 PRK11689 aromatic amino acid e 99.9 2.1E-25 4.6E-30 213.2 28.6 216 155-386 71-290 (295)
7 PRK15430 putative chlorampheni 99.9 4.7E-25 1E-29 210.9 27.7 287 4-391 5-293 (296)
8 PRK10532 threonine and homoser 99.9 1E-24 2.2E-29 208.2 28.9 277 4-387 9-285 (293)
9 TIGR00950 2A78 Carboxylate/Ami 99.9 8.2E-25 1.8E-29 205.2 26.4 212 146-378 48-259 (260)
10 TIGR00817 tpt Tpt phosphate/ph 99.9 6.2E-24 1.3E-28 203.8 23.1 214 155-385 75-295 (302)
11 PTZ00343 triose or hexose phos 99.9 2.1E-22 4.7E-27 196.5 27.9 226 141-384 114-349 (350)
12 TIGR03340 phn_DUF6 phosphonate 99.9 3.2E-22 7E-27 189.9 21.6 215 148-380 66-280 (281)
13 COG0697 RhaT Permeases of the 99.9 2.3E-20 4.9E-25 177.1 30.0 217 146-384 71-288 (292)
14 TIGR00688 rarD rarD protein. T 99.9 4.1E-21 9E-26 179.9 23.5 254 7-358 2-255 (256)
15 KOG4314 Predicted carbohydrate 99.9 1.3E-22 2.9E-27 173.3 9.5 242 132-389 40-282 (290)
16 TIGR00776 RhaT RhaT L-rhamnose 99.8 2.6E-19 5.7E-24 170.4 24.3 223 142-383 56-288 (290)
17 KOG4510 Permease of the drug/m 99.8 7.7E-19 1.7E-23 157.0 9.7 218 158-386 110-328 (346)
18 PF08449 UAA: UAA transporter 99.8 9.4E-17 2E-21 154.1 24.8 239 140-388 63-302 (303)
19 COG5006 rhtA Threonine/homoser 99.7 4.7E-15 1E-19 132.1 23.3 205 156-387 82-286 (292)
20 COG2962 RarD Predicted permeas 99.7 6.5E-14 1.4E-18 128.1 24.1 219 146-391 73-291 (293)
21 PF04142 Nuc_sug_transp: Nucle 99.6 3.1E-14 6.8E-19 131.6 21.8 223 140-374 13-244 (244)
22 KOG2234 Predicted UDP-galactos 99.6 6.6E-13 1.4E-17 124.9 26.9 234 141-388 89-327 (345)
23 KOG3912 Predicted integral mem 99.6 2.7E-13 5.9E-18 122.4 21.4 229 151-384 92-335 (372)
24 KOG1441 Glucose-6-phosphate/ph 99.6 7.7E-15 1.7E-19 138.8 11.5 230 139-388 81-312 (316)
25 KOG2766 Predicted membrane pro 99.5 8E-15 1.7E-19 130.6 2.2 217 149-386 82-302 (336)
26 KOG1443 Predicted integral mem 99.4 5.5E-11 1.2E-15 109.1 18.2 223 138-383 77-315 (349)
27 KOG1580 UDP-galactose transpor 99.2 4.3E-11 9.2E-16 105.8 8.3 221 152-386 92-316 (337)
28 COG2510 Predicted membrane pro 99.2 4E-10 8.6E-15 90.6 11.0 134 239-383 4-139 (140)
29 PF06800 Sugar_transport: Suga 99.1 6.7E-09 1.5E-13 96.1 18.6 218 142-380 42-268 (269)
30 KOG1581 UDP-galactose transpor 99.1 5.8E-08 1.3E-12 89.5 23.0 223 155-386 93-316 (327)
31 PF00892 EamA: EamA-like trans 99.1 1.3E-09 2.8E-14 89.8 10.4 125 248-382 1-125 (126)
32 KOG1444 Nucleotide-sugar trans 99.1 2.7E-08 5.9E-13 92.7 19.8 227 140-390 76-307 (314)
33 PF03151 TPT: Triose-phosphate 99.0 1.1E-08 2.4E-13 87.8 15.1 144 239-383 1-153 (153)
34 KOG1442 GDP-fucose transporter 99.0 1.4E-10 2.9E-15 104.9 0.5 232 142-392 103-336 (347)
35 PRK13499 rhamnose-proton sympo 98.9 3.6E-07 7.7E-12 88.0 23.5 240 142-385 70-343 (345)
36 COG2510 Predicted membrane pro 98.9 8.6E-09 1.9E-13 82.9 9.1 136 8-217 4-139 (140)
37 KOG1582 UDP-galactose transpor 98.9 3.1E-08 6.7E-13 89.6 13.6 241 139-399 104-348 (367)
38 PF00892 EamA: EamA-like trans 98.9 1.7E-09 3.7E-14 89.0 3.9 72 145-216 54-125 (126)
39 KOG1583 UDP-N-acetylglucosamin 98.8 8.1E-09 1.8E-13 93.7 7.3 240 137-384 60-315 (330)
40 PF13536 EmrE: Multidrug resis 98.8 1.3E-08 2.7E-13 83.0 6.0 64 156-220 46-109 (113)
41 TIGR03340 phn_DUF6 phosphonate 98.7 7.5E-07 1.6E-11 84.6 16.1 134 240-384 3-136 (281)
42 TIGR00803 nst UDP-galactose tr 98.6 1.3E-06 2.8E-11 79.9 15.9 193 172-380 5-221 (222)
43 TIGR00950 2A78 Carboxylate/Ami 98.6 4.1E-07 8.8E-12 85.1 12.6 67 147-213 194-260 (260)
44 PRK02971 4-amino-4-deoxy-L-ara 98.6 1.7E-06 3.7E-11 71.8 14.5 122 238-386 2-125 (129)
45 PF05653 Mg_trans_NIPA: Magnes 98.6 1.9E-06 4.1E-11 82.2 16.2 233 143-386 51-295 (300)
46 COG5070 VRG4 Nucleotide-sugar 98.6 3.3E-07 7.1E-12 80.8 8.7 230 140-386 67-299 (309)
47 COG4975 GlcU Putative glucose 98.5 2.5E-08 5.4E-13 89.2 0.4 223 139-382 53-284 (288)
48 PLN00411 nodulin MtN21 family 98.5 1.6E-06 3.4E-11 85.0 11.9 65 156-220 267-331 (358)
49 PRK15430 putative chlorampheni 98.4 6.8E-06 1.5E-10 78.6 15.4 140 235-383 5-145 (296)
50 PRK15051 4-amino-4-deoxy-L-ara 98.4 1.2E-06 2.6E-11 71.0 7.3 69 148-216 40-108 (111)
51 PRK10532 threonine and homoser 98.3 6.6E-06 1.4E-10 78.6 12.8 65 154-218 218-282 (293)
52 TIGR00688 rarD rarD protein. T 98.3 3.9E-05 8.5E-10 71.7 16.4 138 238-383 2-142 (256)
53 PRK11689 aromatic amino acid e 98.3 1.1E-05 2.5E-10 77.1 12.4 66 153-218 223-288 (295)
54 PRK11453 O-acetylserine/cystei 98.2 1.9E-05 4.1E-10 75.7 13.0 77 143-219 213-289 (299)
55 PRK11272 putative DMT superfam 98.2 9.4E-06 2E-10 77.5 10.0 71 148-218 216-286 (292)
56 PF13536 EmrE: Multidrug resis 98.2 2E-05 4.4E-10 64.0 10.0 76 310-386 34-109 (113)
57 PRK15051 4-amino-4-deoxy-L-ara 98.1 4.3E-05 9.3E-10 61.9 10.4 68 316-383 42-109 (111)
58 PF03151 TPT: Triose-phosphate 98.0 0.00018 4E-09 61.4 13.0 73 143-215 79-151 (153)
59 KOG2922 Uncharacterized conser 97.9 8.7E-05 1.9E-09 69.5 10.4 228 143-384 65-307 (335)
60 PRK02971 4-amino-4-deoxy-L-ara 97.8 6.3E-05 1.4E-09 62.5 7.3 72 148-219 51-124 (129)
61 PRK10452 multidrug efflux syst 97.8 0.00013 2.9E-09 59.5 8.4 71 318-388 37-108 (120)
62 TIGR00817 tpt Tpt phosphate/ph 97.8 0.00098 2.1E-08 63.9 16.0 76 307-383 62-137 (302)
63 PTZ00343 triose or hexose phos 97.7 0.0016 3.5E-08 63.8 16.5 76 308-384 112-187 (350)
64 PF06027 DUF914: Eukaryotic pr 97.7 0.00085 1.8E-08 64.8 14.1 145 236-387 11-155 (334)
65 TIGR00776 RhaT RhaT L-rhamnose 97.7 0.001 2.2E-08 63.5 13.8 132 239-385 2-138 (290)
66 COG0697 RhaT Permeases of the 97.6 0.0029 6.3E-08 59.5 16.7 143 236-388 5-148 (292)
67 COG2962 RarD Predicted permeas 97.6 0.00098 2.1E-08 61.9 12.5 141 236-384 5-145 (293)
68 PRK09541 emrE multidrug efflux 97.6 0.00048 1E-08 55.5 9.0 68 318-385 37-105 (110)
69 COG2076 EmrE Membrane transpor 97.6 0.00072 1.6E-08 53.5 9.2 66 320-385 39-105 (106)
70 PRK11431 multidrug efflux syst 97.5 0.00091 2E-08 53.3 9.1 68 318-385 36-104 (105)
71 PRK10650 multidrug efflux syst 97.4 0.0016 3.5E-08 52.3 9.3 65 319-383 43-108 (109)
72 PRK13499 rhamnose-proton sympo 97.3 0.0032 7E-08 60.9 12.0 148 235-390 4-160 (345)
73 PRK10452 multidrug efflux syst 97.2 0.0013 2.8E-08 53.8 6.5 69 151-219 36-105 (120)
74 PRK09541 emrE multidrug efflux 97.1 0.0018 3.8E-08 52.2 6.5 67 152-218 37-104 (110)
75 PF08449 UAA: UAA transporter 97.1 0.015 3.2E-07 55.8 14.0 70 320-389 73-142 (303)
76 PF04657 DUF606: Protein of un 97.0 0.031 6.7E-07 47.0 13.9 132 239-380 2-138 (138)
77 PF05653 Mg_trans_NIPA: Magnes 97.0 0.0045 9.8E-08 59.2 9.3 120 235-384 4-123 (300)
78 PF06379 RhaT: L-rhamnose-prot 96.9 0.14 3.1E-06 49.0 18.8 236 145-384 73-341 (344)
79 PRK10650 multidrug efflux syst 96.9 0.0039 8.5E-08 50.0 7.0 64 152-215 42-106 (109)
80 COG2076 EmrE Membrane transpor 96.8 0.0039 8.5E-08 49.3 6.5 64 154-217 39-103 (106)
81 PRK11431 multidrug efflux syst 96.8 0.0055 1.2E-07 48.9 7.4 65 152-216 36-101 (105)
82 PF06379 RhaT: L-rhamnose-prot 96.8 0.02 4.3E-07 54.7 12.3 155 235-397 4-167 (344)
83 PF06800 Sugar_transport: Suga 96.5 0.045 9.8E-07 51.1 11.9 68 147-214 197-268 (269)
84 PF00893 Multi_Drug_Res: Small 96.4 0.012 2.6E-07 45.9 6.4 54 154-207 38-92 (93)
85 COG5006 rhtA Threonine/homoser 96.3 0.037 8.1E-07 50.5 9.8 74 143-216 207-281 (292)
86 PF10639 UPF0546: Uncharacteri 96.2 0.019 4.1E-07 46.2 7.0 64 152-215 48-112 (113)
87 PF00893 Multi_Drug_Res: Small 96.2 0.017 3.7E-07 45.0 6.6 56 319-374 37-93 (93)
88 PF04142 Nuc_sug_transp: Nucle 95.7 0.045 9.8E-07 50.7 8.0 68 321-388 27-94 (244)
89 COG3238 Uncharacterized protei 95.2 0.53 1.1E-05 39.9 12.0 140 236-384 3-147 (150)
90 KOG4510 Permease of the drug/m 94.9 0.016 3.4E-07 53.3 2.1 138 235-386 35-172 (346)
91 PF04657 DUF606: Protein of un 94.7 0.28 6.1E-06 41.2 9.1 54 161-214 80-138 (138)
92 COG4975 GlcU Putative glucose 94.4 0.016 3.5E-07 52.6 1.1 133 239-387 3-140 (288)
93 KOG2765 Predicted membrane pro 94.1 0.08 1.7E-06 51.0 5.1 75 313-388 162-236 (416)
94 KOG4314 Predicted carbohydrate 93.5 0.065 1.4E-06 47.0 3.1 65 322-386 64-128 (290)
95 TIGR00803 nst UDP-galactose tr 93.3 0.15 3.2E-06 46.4 5.3 57 158-214 165-221 (222)
96 PF10639 UPF0546: Uncharacteri 93.1 0.25 5.4E-06 39.9 5.5 61 321-381 51-112 (113)
97 KOG2922 Uncharacterized conser 91.3 0.067 1.4E-06 50.6 0.4 129 233-391 16-144 (335)
98 PF07857 DUF1632: CEO family ( 89.8 0.54 1.2E-05 43.7 4.9 128 239-384 1-135 (254)
99 KOG2234 Predicted UDP-galactos 89.5 17 0.00036 35.3 14.7 65 321-385 102-166 (345)
100 KOG1580 UDP-galactose transpor 85.2 1.5 3.2E-05 39.9 4.6 66 152-217 248-313 (337)
101 KOG1443 Predicted integral mem 83.8 21 0.00045 34.0 11.6 66 150-215 248-313 (349)
102 KOG1441 Glucose-6-phosphate/ph 82.9 0.61 1.3E-05 44.8 1.4 73 308-381 81-153 (316)
103 PRK02237 hypothetical protein; 81.6 11 0.00024 29.9 7.7 39 348-386 70-108 (109)
104 PF02694 UPF0060: Uncharacteri 79.9 9.1 0.0002 30.3 6.7 39 348-386 68-106 (107)
105 PF07857 DUF1632: CEO family ( 79.5 14 0.00031 34.3 9.1 118 145-262 55-207 (254)
106 KOG3912 Predicted integral mem 78.0 6.2 0.00013 37.0 6.1 64 321-384 96-159 (372)
107 COG3238 Uncharacterized protei 76.7 20 0.00043 30.5 8.3 52 164-215 88-144 (150)
108 KOG1444 Nucleotide-sugar trans 75.9 7.7 0.00017 36.9 6.3 75 145-219 228-302 (314)
109 KOG1581 UDP-galactose transpor 73.5 64 0.0014 30.8 11.5 77 309-386 82-158 (327)
110 PF11742 DUF3302: Protein of u 71.0 41 0.00089 25.1 8.4 62 237-298 5-69 (78)
111 TIGR02865 spore_II_E stage II 64.8 2E+02 0.0044 31.5 15.0 44 172-215 11-54 (764)
112 KOG4831 Unnamed protein [Funct 64.7 7.2 0.00016 30.8 2.9 63 154-216 61-124 (125)
113 COG3086 RseC Positive regulato 62.5 9.4 0.0002 32.0 3.3 57 335-393 72-133 (150)
114 PF02694 UPF0060: Uncharacteri 61.9 10 0.00022 30.1 3.3 40 179-218 65-104 (107)
115 PF04342 DUF486: Protein of un 61.4 11 0.00024 29.8 3.4 30 352-381 77-106 (108)
116 PRK02237 hypothetical protein; 61.2 9.7 0.00021 30.2 3.1 40 179-218 67-106 (109)
117 COG1742 Uncharacterized conser 59.0 21 0.00046 28.1 4.6 41 179-219 66-106 (109)
118 PF04342 DUF486: Protein of un 58.9 71 0.0015 25.3 7.4 51 165-215 55-106 (108)
119 KOG1582 UDP-galactose transpor 55.7 46 0.001 31.2 6.9 54 166-219 281-334 (367)
120 COG1742 Uncharacterized conser 54.6 34 0.00075 27.0 5.0 39 348-386 69-107 (109)
121 PF05297 Herpes_LMP1: Herpesvi 52.7 4.6 9.9E-05 37.7 0.0 53 164-216 42-96 (381)
122 PF11139 DUF2910: Protein of u 51.0 82 0.0018 28.3 7.9 77 139-215 109-209 (214)
123 COG3169 Uncharacterized protei 50.4 1.2E+02 0.0026 23.7 8.1 33 351-383 83-115 (116)
124 KOG4831 Unnamed protein [Funct 50.3 16 0.00034 29.0 2.6 58 324-381 65-123 (125)
125 KOG2766 Predicted membrane pro 47.8 1.8 3.9E-05 39.9 -3.4 71 314-385 82-152 (336)
126 COG5070 VRG4 Nucleotide-sugar 47.6 25 0.00055 31.9 3.8 66 149-214 228-293 (309)
127 PF13127 DUF3955: Protein of u 45.1 16 0.00035 26.1 1.8 43 3-45 2-46 (63)
128 COG2149 Predicted membrane pro 44.2 1.4E+02 0.003 24.2 7.1 43 362-404 52-94 (120)
129 KOG1583 UDP-N-acetylglucosamin 41.9 70 0.0015 30.2 5.8 45 172-216 269-313 (330)
130 PRK10666 ammonium transporter; 41.8 3.9E+02 0.0083 27.0 12.3 122 148-284 223-350 (428)
131 KOG1442 GDP-fucose transporter 38.2 8.6 0.00019 35.9 -0.6 57 329-385 120-176 (347)
132 PF04246 RseC_MucC: Positive r 30.4 34 0.00074 28.3 1.9 12 372-383 105-116 (135)
133 PF09656 PGPGW: Putative trans 26.0 88 0.0019 21.5 2.9 45 200-262 4-48 (53)
134 COG2917 Intracellular septatio 24.7 4.2E+02 0.0091 23.1 7.4 39 181-220 32-71 (180)
135 PHA02088 hypothetical protein 24.1 76 0.0016 24.7 2.5 32 366-397 5-36 (125)
136 COG3086 RseC Positive regulato 23.3 64 0.0014 27.2 2.1 23 170-192 73-95 (150)
137 PF14150 YesK: YesK-like prote 22.5 3.5E+02 0.0075 20.4 9.1 17 310-326 59-75 (81)
138 TIGR02230 ATPase_gene1 F0F1-AT 22.5 3.9E+02 0.0084 21.0 6.5 23 269-291 37-59 (100)
139 PF11381 DUF3185: Protein of u 22.2 50 0.0011 23.3 1.1 32 368-399 2-33 (59)
140 PF06645 SPC12: Microsomal sig 21.9 94 0.002 23.1 2.6 42 345-386 18-59 (76)
141 PF10710 DUF2512: Protein of u 21.7 4.8E+02 0.01 21.8 7.3 49 312-360 32-82 (136)
142 PF01350 Flavi_NS4A: Flaviviru 21.3 5.1E+02 0.011 21.9 7.6 56 327-386 64-119 (144)
143 TIGR01299 synapt_SV2 synaptic 20.9 1.1E+03 0.024 25.7 17.9 261 59-330 36-353 (742)
144 COG3247 HdeD Uncharacterized c 20.8 5.9E+02 0.013 22.5 10.0 25 194-218 16-40 (185)
145 PF02554 CstA: Carbon starvati 20.7 8.3E+02 0.018 24.2 9.5 74 141-214 128-203 (376)
146 COG3169 Uncharacterized protei 20.3 97 0.0021 24.2 2.4 30 186-215 84-113 (116)
147 PF11044 TMEMspv1-c74-12: Plec 20.2 2E+02 0.0044 18.9 3.5 8 376-383 21-28 (49)
No 1
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.9e-53 Score=394.53 Aligned_cols=375 Identities=40% Similarity=0.686 Sum_probs=289.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcEeeheecchhhHHHHHHHHHH--HHHHhhhhhhhcccc----
Q 015504 1 MGWKYQAGLGLIGAFVLIWITSAEITQKIFTE--YRQPFALTYLGVSLMVIYLPVALLR--DCFCSLLDKNIFKNL---- 72 (405)
Q Consensus 1 ~~~~~~~g~~~~l~~~i~w~~~~~l~q~i~~~--~~~P~~~t~~~~~~~~l~lp~~~~~--~~~~~~~~~~~~~~~---- 72 (405)
+.|||.+|++++++|.++|+++++++|+++++ |+|||++||++++.+++|+|.+.+. +|+....|+++.+..
T Consensus 8 ~~~r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e 87 (416)
T KOG2765|consen 8 KRWRWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEE 87 (416)
T ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhh
Confidence 35899999999999999999999999999987 6799999999999999999865432 344333221111110
Q ss_pred cCCCcccCCCCCCCCcccccccccchhhhhhcccc---cCcCcCccccCCccccc---CCC---CCcchhhcccCCCHHH
Q 015504 73 FGNRSLTSTSTGLDIPLKSNELNNSLETDLRSSLM---MDKDLSEREEGWPLIAK---SDK---DEPHVLEQRSELSSWA 143 (405)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~ 143 (405)
.+++.+.++.++ . +.-|.++..... ..++.+.+||+.+-... .++ ..+..++.+.+++.++
T Consensus 88 ~d~e~y~~~~~~------~----~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~ 157 (416)
T KOG2765|consen 88 ADAEGYFSACTT------D----KTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQ 157 (416)
T ss_pred hhhhcccccccc------c----cccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHH
Confidence 011111111000 0 000001000000 00111111111000000 000 0011133445678889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCcc
Q 015504 144 IAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWAA 223 (405)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~ 223 (405)
..+.++.++++||++|++++.||.+|+++..+++++++.+||.+++.++..||+|+.|++++++++.|++++..+|....
T Consensus 158 ~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~ 237 (416)
T KOG2765|consen 158 TAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN 237 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876433
Q ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccC
Q 015504 224 DEFLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRF 303 (405)
Q Consensus 224 ~~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 303 (405)
++ ...+....|+++++++|+.||+|.++.||..++++.++++++++|++|+++++++||.++++++++.|+ |++
T Consensus 238 ~~-----~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~-F~l 311 (416)
T KOG2765|consen 238 SD-----LPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEER-FEL 311 (416)
T ss_pred cc-----CCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCc-ccC
Confidence 22 234567899999999999999999999999987667999999999999999999999999999998885 999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhc
Q 015504 304 PHSQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANL 383 (405)
Q Consensus 304 ~~~~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~ 383 (405)
|.... ...++..+++++++++++|.+|+-+++|..+++++++++|+|++.|.++.|.++++.+++|.+.|++|++++++
T Consensus 312 P~~~q-~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~ 390 (416)
T KOG2765|consen 312 PSSTQ-FSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNI 390 (416)
T ss_pred CCCce-eEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheec
Confidence 98764 44677788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhHH
Q 015504 384 SDKFSAKIE 392 (405)
Q Consensus 384 ~~~~~~~~~ 392 (405)
..+..++++
T Consensus 391 ~~~~~~~~~ 399 (416)
T KOG2765|consen 391 SSENSKKDP 399 (416)
T ss_pred ccccccccc
Confidence 876555444
No 2
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.97 E-value=2.3e-28 Score=237.79 Aligned_cols=305 Identities=10% Similarity=0.049 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeeheecchhhHHHH-HHHHHHHHHHhhhhhhhcccccCCCcccCCCC
Q 015504 5 YQAGLGLIGAFVLIWITSAEITQKIFTEYRQPFALTYLGVSLMVIYL-PVALLRDCFCSLLDKNIFKNLFGNRSLTSTST 83 (405)
Q Consensus 5 ~~~g~~~~l~~~i~w~~~~~l~q~i~~~~~~P~~~t~~~~~~~~l~l-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (405)
...-.+.++++.+.+++...+.|..++++-.|+.+.++|+....+++ |+.+.+ +|+++
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~--------~~~~~------------- 69 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFT--------NRSRS------------- 69 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHH--------HHhcc-------------
Confidence 45577889999999999999999999999999999999988877665 543321 11100
Q ss_pred CCCCcccccccccchhhhhhcccccCcCcCccccCCcccccCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 015504 84 GLDIPLKSNELNNSLETDLRSSLMMDKDLSEREEGWPLIAKSDKDEPHVLEQRSELSSWAIAKCSLYLTPIWFITEYFSN 163 (405)
Q Consensus 84 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (405)
.++.+++++....+.+.+. ++.+.+++
T Consensus 70 ----------------------------------------------------~~~~~~~~~~~l~l~g~~g-~~~~~~~~ 96 (358)
T PLN00411 70 ----------------------------------------------------LPPLSVSILSKIGLLGFLG-SMYVITGY 96 (358)
T ss_pred ----------------------------------------------------cCcchHHHHHHHHHHHHHH-HHHHHHHH
Confidence 0011233444444444333 34556789
Q ss_pred HHhhccchhhHHHHhhhhHHHHHHHHHHh------ccccchHHHHHHHHHhhhceEEEEecCCCcc-cc---------cc
Q 015504 164 SALANTSVASTTVLTSTSGLFTLFFGALL------GQDSITIAKLVAVFISMAGVAMTTVGKTWAA-DE---------FL 227 (405)
Q Consensus 164 ~al~~~s~~~~~~l~~~~pv~~~ils~l~------~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~-~~---------~~ 227 (405)
.|++|+++++++++.+++|++++++++++ ++||+++++++|++++++|+.++...++... .. ..
T Consensus 97 ~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~ 176 (358)
T PLN00411 97 IGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQL 176 (358)
T ss_pred HHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccccccccc
Confidence 99999999999999999999999999999 6999999999999999999998775432110 00 00
Q ss_pred c--cccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCC
Q 015504 228 S--ASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPH 305 (405)
Q Consensus 228 ~--~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 305 (405)
. ......+...|++++++++++||+|.++.|+..+++++..........++ +.....+.. ...-..... +....
T Consensus 177 ~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~l-~~~~~~~~~-~~~~~ 252 (358)
T PLN00411 177 SPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCV--SIVTSMIGL-VVEKNNPSV-WIIHF 252 (358)
T ss_pred ccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHH--HHHHHHHHH-HHccCCccc-ceecc
Confidence 0 00111234679999999999999999999998776544322221111111 111111111 100000110 11122
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCc
Q 015504 306 SQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSD 385 (405)
Q Consensus 306 ~~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~ 385 (405)
+.. ...++|.+++ +.++|.+|++++++.+|.+++++.+++|+++++++++++||++++.+++|+++|++|+++.++++
T Consensus 253 ~~~-~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 253 DIT-LITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK 330 (358)
T ss_pred chH-HHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 222 3457777765 67899999999999999999999999999999999999999999999999999999999998765
Q ss_pred hhhh
Q 015504 386 KFSA 389 (405)
Q Consensus 386 ~~~~ 389 (405)
+++.
T Consensus 331 ~~~~ 334 (358)
T PLN00411 331 ANEE 334 (358)
T ss_pred hhhh
Confidence 4433
No 3
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.96 E-value=5.8e-28 Score=230.37 Aligned_cols=226 Identities=23% Similarity=0.330 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCccccccccc
Q 015504 151 LTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWAADEFLSAS 230 (405)
Q Consensus 151 ~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~~~~~~~~ 230 (405)
.+++++.+|++...|++||+.+.++++.+++.+++++++++++|+|+++.+++|++++++|+.++...|..+.+++
T Consensus 85 la~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~---- 160 (334)
T PF06027_consen 85 LALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDS---- 160 (334)
T ss_pred HHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccC----
Confidence 4678999999999999999999999999999999999999999999999999999999999999998876433222
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHH
Q 015504 231 ESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVG 310 (405)
Q Consensus 231 ~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 310 (405)
...++...||+++++||++||+++++.|+..++. +...++++.|+++.++.++....++..++|+ .+++ ...+
T Consensus 161 ~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~----~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~-~~w~--~~~~ 233 (334)
T PF06027_consen 161 SSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA----PRVEFLGMLGLFGFIISGIQLAILERSGIES-IHWT--SQVI 233 (334)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC----CHHHHHHHHHHHHHHHHHHHHHheehhhhhc-cCCC--hhhH
Confidence 2345689999999999999999999999998742 3456788889999998888777777777664 4443 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCchhh
Q 015504 311 EVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDKFS 388 (405)
Q Consensus 311 ~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~~~ 388 (405)
..++.. .++..+.|.+....+++++|+...+.+..+.|.++++|++++|+++++..++|.++|++|+++++..++..
T Consensus 234 ~~~v~~-~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 234 GLLVGY-ALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence 333322 33567788899999999999999999999999999999999999999999999999999999999876533
No 4
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.95 E-value=5.2e-26 Score=217.07 Aligned_cols=285 Identities=16% Similarity=0.099 Sum_probs=208.0
Q ss_pred CchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCcEeeheecchhhHHHH-HHHHHHHHHHhhhhhhhcccccCCCcc
Q 015504 1 MGWKYQAGLG-LIGAFVLIWITSAEITQKIFTEYRQPFALTYLGVSLMVIYL-PVALLRDCFCSLLDKNIFKNLFGNRSL 78 (405)
Q Consensus 1 ~~~~~~~g~~-~~l~~~i~w~~~~~l~q~i~~~~~~P~~~t~~~~~~~~l~l-p~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (405)
|+.|..+.++ .++++.++|+.+...+|...+ .-.|+.++..|.....+.+ |+... ++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~---------~~~~--------- 61 (292)
T PRK11272 1 MRFRQLLPLFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLL---------RGHP--------- 61 (292)
T ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHH---------hCCC---------
Confidence 4556555554 588899999999999998777 6789999998988766554 43211 1100
Q ss_pred cCCCCCCCCcccccccccchhhhhhcccccCcCcCccccCCcccccCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHH
Q 015504 79 TSTSTGLDIPLKSNELNNSLETDLRSSLMMDKDLSEREEGWPLIAKSDKDEPHVLEQRSELSSWAIAKCSLYLTPIWFIT 158 (405)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (405)
..++++.......+.+.+...
T Consensus 62 -----------------------------------------------------------~~~~~~~~~~~~~g~~~~~~~ 82 (292)
T PRK11272 62 -----------------------------------------------------------LPTLRQWLNAALIGLLLLAVG 82 (292)
T ss_pred -----------------------------------------------------------CCcHHHHHHHHHHHHHHHHHH
Confidence 001122222333333334456
Q ss_pred HHHHHHHh-hccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCccccccccccccccch
Q 015504 159 EYFSNSAL-ANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWAADEFLSASESRRHNI 237 (405)
Q Consensus 159 ~~~~~~al-~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~ 237 (405)
+.+++.+. ++++++.++++.++.|+++++++++ +|||+++++++|++++++|++++..++. .+...
T Consensus 83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~------------~~~~~ 149 (292)
T PRK11272 83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN------------LSGNP 149 (292)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc------------cccch
Confidence 67778898 9999999999999999999999986 6999999999999999999998864321 01245
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHHHHHHH
Q 015504 238 TGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLLLNG 317 (405)
Q Consensus 238 ~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~il~~g 317 (405)
.|++++++++++||.|.+..||..+++ +.......+ .++...+.+... ..+ + ......+...|..+++.+
T Consensus 150 ~G~l~~l~a~~~~a~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~---~~~-~-~~~~~~~~~~~~~i~~l~ 219 (292)
T PRK11272 150 WGAILILIASASWAFGSVWSSRLPLPV-GMMAGAAEM----LAAGVVLLIASL---LSG-E-RLTALPTLSGFLALGYLA 219 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc-chHHHHHHH----HHHHHHHHHHHH---HcC-C-cccccCCHHHHHHHHHHH
Confidence 799999999999999999999976532 211111111 122222222111 111 1 122222345688899999
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCch
Q 015504 318 FVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDK 386 (405)
Q Consensus 318 ~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~ 386 (405)
++++++++.+|++++++.++..+++..+++|+++++++++++||+++..+++|+++|+.|+++.++.++
T Consensus 220 i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 220 VFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999876433
No 5
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.95 E-value=5.3e-26 Score=217.74 Aligned_cols=215 Identities=11% Similarity=0.135 Sum_probs=163.7
Q ss_pred HHHHHHHHhhc-cchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCccccccccccccccc
Q 015504 158 TEYFSNSALAN-TSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWAADEFLSASESRRHN 236 (405)
Q Consensus 158 ~~~~~~~al~~-~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~ 236 (405)
...+++.+++| .+++.++++.+++|+++.+++++++|||+++++++|++++++|+.++..++.. .....
T Consensus 72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~----------~~~~~ 141 (299)
T PRK11453 72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLN----------GQHVA 141 (299)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCC----------Ccchh
Confidence 34466788888 58899999999999999999999999999999999999999999998854321 11123
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc--c-CCCchhHHHHH
Q 015504 237 ITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPF--R-FPHSQSVGEVL 313 (405)
Q Consensus 237 ~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~-~~~~~~~~~~i 313 (405)
..|++++++++++||.|.++.||..++++........ .+..+...+ |........+.+... . .+.+...|..+
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 217 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLV-VWSALIPII---PFFVASLILDGSATMIHSLVTIDMTTILSL 217 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHH-HHHHHHHHH---HHHHHHHHhcCchhhhhhhccCCHHHHHHH
Confidence 5799999999999999999999986543322211111 111222211 111111111100000 0 12234578889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCch
Q 015504 314 LLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDK 386 (405)
Q Consensus 314 l~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~ 386 (405)
+|.++++++++|.+|++++++.++.++++..+++|+++++++++++||+++..+++|+++|+.|+++..++.+
T Consensus 218 ~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 218 MYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888665
No 6
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.95 E-value=2.1e-25 Score=213.16 Aligned_cols=216 Identities=15% Similarity=0.158 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHhh----ccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCccccccccc
Q 015504 155 WFITEYFSNSALA----NTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWAADEFLSAS 230 (405)
Q Consensus 155 ~~~~~~~~~~al~----~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~~~~~~~~ 230 (405)
....+.+++.|++ .+++++++++.+++|+++.+++++++|||+++++++|++++++|++++..++......+. .
T Consensus 71 ~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~--~ 148 (295)
T PRK11689 71 FVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAEL--I 148 (295)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhh--h
Confidence 3344555566665 467888999999999999999999999999999999999999999999865421100000 0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHH
Q 015504 231 ESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVG 310 (405)
Q Consensus 231 ~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 310 (405)
.+......|++++++++++||+|.++.||..++.++ .. ..+...+ +.+++. ....+ + ...+.+...|
T Consensus 149 ~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~-~~--~~~~~~~----~~l~~~---~~~~~-~--~~~~~~~~~~ 215 (295)
T PRK11689 149 NNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKNG-IT--LFFILTA----LALWIK---YFLSP-Q--PAMVFSLPAI 215 (295)
T ss_pred hccccChHHHHHHHHHHHHHHHHHHHHhhccCCCCc-hh--HHHHHHH----HHHHHH---HHHhc-C--ccccCCHHHH
Confidence 011124579999999999999999999998764332 22 1111111 111111 11111 1 1122334567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCch
Q 015504 311 EVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDK 386 (405)
Q Consensus 311 ~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~ 386 (405)
..+++.++ +++++|.+|++++++.+|+++++..+++|+++++++++++||+++..+++|+++|+.|+++....++
T Consensus 216 ~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 216 IKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 77778785 6899999999999999999999999999999999999999999999999999999999999876544
No 7
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.94 E-value=4.7e-25 Score=210.87 Aligned_cols=287 Identities=10% Similarity=0.056 Sum_probs=201.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeeheecchhhHHHH-HHHHHHHHHHhhhhhhhcccccCCCcccCCC
Q 015504 4 KYQAGLGLIGAFVLIWITSAEITQKIFTEYRQPFALTYLGVSLMVIYL-PVALLRDCFCSLLDKNIFKNLFGNRSLTSTS 82 (405)
Q Consensus 4 ~~~~g~~~~l~~~i~w~~~~~l~q~i~~~~~~P~~~t~~~~~~~~l~l-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (405)
++.+|.+++++..++|+.....+|.. .+ -.|..+++.|.....+++ ++...+ ++++..
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~-~~~~~~~~~R~~~a~~~l~~~~~~~-------~~~~~~------------ 63 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YY-VPADEILTHRVIWSFFFMVVLMSIC-------RQWSYL------------ 63 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHHHHHHHHHH-------ccHHHH------------
Confidence 56689999999999999999999875 33 568999999887766544 332211 000000
Q ss_pred CCCCCcccccccccchhhhhhcccccCcCcCccccCCcccccCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 015504 83 TGLDIPLKSNELNNSLETDLRSSLMMDKDLSEREEGWPLIAKSDKDEPHVLEQRSELSSWAIAKCSLYLTPIWFITEYFS 162 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (405)
+++ ..++++. ...+.+++..+..+.++
T Consensus 64 ---------------------------------------------------~~~-~~~~~~~-~~~~~~~~~~~~~~~~~ 90 (296)
T PRK15430 64 ---------------------------------------------------KTL-IQTPQKI-FMLAVSAVLIGGNWLLF 90 (296)
T ss_pred ---------------------------------------------------HHH-HcCHHHH-HHHHHHHHHHHHHHHHH
Confidence 000 0012222 22334455666788999
Q ss_pred HHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCccccccccccccccchhhHHH
Q 015504 163 NSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWAADEFLSASESRRHNITGDIF 242 (405)
Q Consensus 163 ~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~G~~l 242 (405)
++|++++++++++++.+++|+++.+++++++|||+++++++|++++++|++++..+++ + . ..+
T Consensus 91 ~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-----------~--~----~~~ 153 (296)
T PRK15430 91 IWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-----------S--L----PII 153 (296)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-----------C--c----cHH
Confidence 9999999999999999999999999999999999999999999999999999864321 0 0 256
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhH-HHHHHHHHHHHH
Q 015504 243 GLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSV-GEVLLLNGFVGS 321 (405)
Q Consensus 243 ~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~il~~g~~~t 321 (405)
+++++++||+|.++.|+...+ + .........+...++.... .+....+. .....++.. +..+++.|+ .+
T Consensus 154 ~l~aa~~~a~~~i~~r~~~~~-~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~g~-~t 223 (296)
T PRK15430 154 ALGLAFSFAFYGLVRKKIAVE-A-QTGMLIETMWLLPVAAIYL----FAIADSST---SHMGQNPMSLNLLLIAAGI-VT 223 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCCC-C-chhHHHHHHHHHHHHHHHH----HHHccCCc---ccccCCcHHHHHHHHHHHH-HH
Confidence 888999999999999987542 1 1111111111111111111 01111011 111112222 333444454 58
Q ss_pred HHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCchhhhhH
Q 015504 322 VLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDKFSAKI 391 (405)
Q Consensus 322 ~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~~~~~~ 391 (405)
.+++.+|+++.++.+|..+++..+++|+++++++++++||+++..+++|+++|+.|+.+...+..+..|+
T Consensus 224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~~~~~~ 293 (296)
T PRK15430 224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQRR 293 (296)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8999999999999999999999999999999999999999999999999999999998888776655443
No 8
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.94 E-value=1e-24 Score=208.20 Aligned_cols=277 Identities=13% Similarity=0.050 Sum_probs=199.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeeheecchhhHHHHHHHHHHHHHHhhhhhhhcccccCCCcccCCCC
Q 015504 4 KYQAGLGLIGAFVLIWITSAEITQKIFTEYRQPFALTYLGVSLMVIYLPVALLRDCFCSLLDKNIFKNLFGNRSLTSTST 83 (405)
Q Consensus 4 ~~~~g~~~~l~~~i~w~~~~~l~q~i~~~~~~P~~~t~~~~~~~~l~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (405)
.+.+|.+++++..+.|+.+...+|+..++ -.|+.+.+.|.....+.+.+.. + +++.+.
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~-~-------~~~~~~------------- 66 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIF-K-------PWRLRF------------- 66 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHH-h-------HHhccC-------------
Confidence 35679999999999999999999999987 6777788888777665542211 1 111000
Q ss_pred CCCCcccccccccchhhhhhcccccCcCcCccccCCcccccCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 015504 84 GLDIPLKSNELNNSLETDLRSSLMMDKDLSEREEGWPLIAKSDKDEPHVLEQRSELSSWAIAKCSLYLTPIWFITEYFSN 163 (405)
Q Consensus 84 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (405)
++..++..+..+ .+....+.+++
T Consensus 67 -----------------------------------------------------~~~~~~~~~~~g----~~~~~~~~~~~ 89 (293)
T PRK10532 67 -----------------------------------------------------AKEQRLPLLFYG----VSLGGMNYLFY 89 (293)
T ss_pred -----------------------------------------------------CHHHHHHHHHHH----HHHHHHHHHHH
Confidence 001122223333 23455677889
Q ss_pred HHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCccccccccccccccchhhHHHH
Q 015504 164 SALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWAADEFLSASESRRHNITGDIFG 243 (405)
Q Consensus 164 ~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 243 (405)
+|+++++++.++.+.+++|+++.+++. ||+.+ ..++.++++|++++..++.. .......|++++
T Consensus 90 ~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~~~~~----------~~~~~~~G~ll~ 153 (293)
T PRK10532 90 LSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLPLGQD----------VSHVDLTGAALA 153 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeeecCCC----------cccCChHHHHHH
Confidence 999999999999999999999998873 55554 45567789999988754321 112245799999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHHHHHHHHHHHHH
Q 015504 244 LLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLLLNGFVGSVL 323 (405)
Q Consensus 244 l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~il~~g~~~t~l 323 (405)
++++++||.|.++.||..++.++ .... +..+++.+.+.|... ..+. ..+.+...|..+++.|++++++
T Consensus 154 l~aa~~~a~~~v~~r~~~~~~~~-~~~~----~~~~~~~~~l~~~~~---~~~~----~~~~~~~~~~~~l~lgv~~t~~ 221 (293)
T PRK10532 154 LGAGACWAIYILSGQRAGAEHGP-ATVA----IGSLIAALIFVPIGA---LQAG----EALWHWSILPLGLAVAILSTAL 221 (293)
T ss_pred HHHHHHHHHHHHHHHHHhccCCc-hHHH----HHHHHHHHHHHHHHH---HccC----cccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999998764332 2221 122233333333211 1111 1122344566678999999999
Q ss_pred HHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCchh
Q 015504 324 SDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDKF 387 (405)
Q Consensus 324 ~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~~ 387 (405)
+|.+|++++++.++..+++..+++|+++++++++++||+++..+++|+++|+.|.+...+..++
T Consensus 222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999998765443
No 9
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.94 E-value=8.2e-25 Score=205.19 Aligned_cols=212 Identities=21% Similarity=0.234 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCcccc
Q 015504 146 KCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWAADE 225 (405)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~~~ 225 (405)
+....+++...+.+.+++.|++|+++++++++.+++|+++++++++++|||+++++++|++++++|++++..++.
T Consensus 48 ~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~----- 122 (260)
T TIGR00950 48 RLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN----- 122 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc-----
Confidence 344555555667888999999999999999999999999999999999999999999999999999999875432
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCC
Q 015504 226 FLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPH 305 (405)
Q Consensus 226 ~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 305 (405)
.+....|+.++++++++|+.|.++.|+..++.++. .... ..+...++.+++.|.. ...+ ++ . +.
T Consensus 123 -------~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~-~~~~-~~~~~~~~~~~l~~~~---~~~~-~~-~--~~ 186 (260)
T TIGR00950 123 -------LSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPE-LLQF-TGWVLLLGALLLLPFA---WFLG-PN-P--QA 186 (260)
T ss_pred -------ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCch-HHHH-HHHHHHHHHHHHHHHH---HhcC-CC-C--Cc
Confidence 12346899999999999999999999988643321 1111 1111222233222221 1111 11 1 22
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Q 015504 306 SQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGF 378 (405)
Q Consensus 306 ~~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~ 378 (405)
+...|..+++.+++++.+++.+|++++++.++.++++..+++|+++++++++++||+++..+++|+++++.|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 187 LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 3456777888999999999999999999999999999999999999999999999999999999999999986
No 10
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.93 E-value=6.2e-24 Score=203.82 Aligned_cols=214 Identities=17% Similarity=0.226 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCccccccccccccc
Q 015504 155 WFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWAADEFLSASESRR 234 (405)
Q Consensus 155 ~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~ 234 (405)
......+.+.|++|++++.++++.+++|+++++++++++|||++++++.|++++++|+++....+. +
T Consensus 75 ~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~-------------~ 141 (302)
T TIGR00817 75 HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTEL-------------S 141 (302)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcc-------------c
Confidence 455667889999999999999999999999999999999999999999999999999987642211 2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcC--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-Cc-cC--CCc-h
Q 015504 235 HNITGDIFGLLSAITYGLFTVLLKKSAG--SEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEP-PF-RF--PHS-Q 307 (405)
Q Consensus 235 ~~~~G~~l~l~sa~~~a~y~v~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~-~~--~~~-~ 307 (405)
....|++++++++++||+|.++.||..+ +.++ .. ...+...++.+.+.|........+..+ .+ .. ... .
T Consensus 142 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~-~~---~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (302)
T TIGR00817 142 FNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDK-TN---LYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVT 217 (302)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc-cc---HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCch
Confidence 2467999999999999999999999876 3222 11 222223333333333322111000000 00 00 001 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCc
Q 015504 308 SVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSD 385 (405)
Q Consensus 308 ~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~ 385 (405)
..+...++.+..+....+.+++.++++++|+++++..+++|+++++++++++||+++..+++|++++++|++++++.+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 218 KIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 122222232322233333566689999999999999999999999999999999999999999999999999998643
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.91 E-value=2.1e-22 Score=196.49 Aligned_cols=226 Identities=12% Similarity=0.160 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCC
Q 015504 141 SWAIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKT 220 (405)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~ 220 (405)
.++++..++++... +...+.|+++++++.++++.++.|+++++++++++|||++++++.+++++++|+++.+.++.
T Consensus 114 ~~~llp~gl~~~~~----~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~ 189 (350)
T PTZ00343 114 LKNFLPQGLCHLFV----HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL 189 (350)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc
Confidence 44555555554433 33456999999999999999999999999999999999999999999999999999885432
Q ss_pred CccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCC---cchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015504 221 WAADEFLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGD---KVDVQKFFGYIGLFTFLGLWWLIWPLNAAGI 297 (405)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (405)
+.+..|+++++++++++|+|.++.||..++.+. ..+......+..+++.+++.|..........
T Consensus 190 -------------~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~ 256 (350)
T PTZ00343 190 -------------HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKW 256 (350)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 225689999999999999999999998875431 1222223333334444444444332111000
Q ss_pred CCCc---cCCCchhHHHHHHHHHHHHHHHHHHHHHH----HHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHH
Q 015504 298 EPPF---RFPHSQSVGEVLLLNGFVGSVLSDYFWAL----SVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFG 370 (405)
Q Consensus 298 e~~~---~~~~~~~~~~~il~~g~~~t~l~~~l~~~----~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG 370 (405)
...+ ..+.....+..+++. ++.+++++++|+. ++++++|.+.++..+++|+++++++++++||+++..+++|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG 335 (350)
T PTZ00343 257 VPVWTNYTANMTNYTKGIIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLG 335 (350)
T ss_pred HHHHHHhhhcccccchHHHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHH
Confidence 0000 000011122334443 4557889999995 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 015504 371 CLQVFAGFIIANLS 384 (405)
Q Consensus 371 ~~lI~~g~~l~~~~ 384 (405)
++++++|++++++-
T Consensus 336 ~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 336 MAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998764
No 12
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.90 E-value=3.2e-22 Score=189.91 Aligned_cols=215 Identities=11% Similarity=0.051 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCcccccc
Q 015504 148 SLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWAADEFL 227 (405)
Q Consensus 148 ~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~~~~~ 227 (405)
.+.++.......++++.|+++++++.++.+.+++|+++.+++++++|||+++++++|+++++.|++++..++..
T Consensus 66 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~------ 139 (281)
T TIGR03340 66 LAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA------ 139 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc------
Confidence 34445555667788899999999999999999999999999999999999999999999999999988754321
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCch
Q 015504 228 SASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQ 307 (405)
Q Consensus 228 ~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 307 (405)
..+..|+.++++++++|+.|.++.|+..++.++............+.. ..|........+..+ . .+ ..
T Consensus 140 ------~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~-~~-~~ 207 (281)
T TIGR03340 140 ------QHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAM---GWPFLLLYLKRHGRS-M-FP-YA 207 (281)
T ss_pred ------ccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHH---HHHHHHHHHHHhccc-h-hh-hH
Confidence 123468889999999999999998886543222222111111111111 011111111111110 1 11 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHH
Q 015504 308 SVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFII 380 (405)
Q Consensus 308 ~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l 380 (405)
..++.+++.+.+++.++|.+|++++++.++..++...+++|+++.+++++++||+++..+++|+++|+.|+++
T Consensus 208 ~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 208 RQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 2345667778888999999999999999999999999999999999999999999999999999999999876
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.89 E-value=2.3e-20 Score=177.13 Aligned_cols=217 Identities=20% Similarity=0.263 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHH-HhccccchHHHHHHHHHhhhceEEEEecCCCccc
Q 015504 146 KCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGA-LLGQDSITIAKLVAVFISMAGVAMTTVGKTWAAD 224 (405)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~-l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~~ 224 (405)
+..+.++......+.+++.++++++++.++.+.+++|+++.++++ ++++||+++.++.++++++.|++++..++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~-- 148 (292)
T COG0697 71 LLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG-- 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc--
Confidence 344445556677888999999999999999999999999999997 77799999999999999999999999876521
Q ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCC
Q 015504 225 EFLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFP 304 (405)
Q Consensus 225 ~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 304 (405)
... ...|+.+++++++++|+|.+..|+.. +.++ ...... +.......... +.... + ...+
T Consensus 149 -------~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~-~~~~~~--~~~~~~~~~~~----~~~~~--~--~~~~ 208 (292)
T COG0697 149 -------GIL-SLLGLLLALAAALLWALYTALVKRLS-RLGP-VTLALL--LQLLLALLLLL----LFFLS--G--FGAP 208 (292)
T ss_pred -------hhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCh-HHHHHH--HHHHHHHHHHH----HHHhc--c--cccc
Confidence 001 57899999999999999999999987 3222 221111 11111111110 11111 1 1133
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcC
Q 015504 305 HSQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLS 384 (405)
Q Consensus 305 ~~~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~ 384 (405)
.....|..+.+.|++++++++.+|++++++.++..++...+++|+++++++++++||+++..+++|+++++.|+.+.+..
T Consensus 209 ~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 209 ILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 44556888899999999999999999999999999999999988889999999999999999999999999999999876
No 14
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.89 E-value=4.1e-21 Score=179.88 Aligned_cols=254 Identities=11% Similarity=0.040 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeeheecchhhHHHHHHHHHHHHHHhhhhhhhcccccCCCcccCCCCCCC
Q 015504 7 AGLGLIGAFVLIWITSAEITQKIFTEYRQPFALTYLGVSLMVIYLPVALLRDCFCSLLDKNIFKNLFGNRSLTSTSTGLD 86 (405)
Q Consensus 7 ~g~~~~l~~~i~w~~~~~l~q~i~~~~~~P~~~t~~~~~~~~l~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
+|.+++++.+++|+.+...+|++ .+ ..|+.+++.|.....+.+.++... .+++++..
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~-~~~~~i~~~R~~~a~~~l~~~~~~------~~~~~~~~--------------- 58 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KP-LPATDILGHRMIWSFPFMLLSVTL------FRQWAALI--------------- 58 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-cc-CCHHHHHHHHHHHHHHHHHHHHHH------HcchHHHH---------------
Confidence 38899999999999999999984 33 799999999987766654322211 01110000
Q ss_pred CcccccccccchhhhhhcccccCcCcCccccCCcccccCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015504 87 IPLKSNELNNSLETDLRSSLMMDKDLSEREEGWPLIAKSDKDEPHVLEQRSELSSWAIAKCSLYLTPIWFITEYFSNSAL 166 (405)
Q Consensus 87 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 166 (405)
+..+ +..+++........+++....+.+|+.|+
T Consensus 59 --------------------------------------------~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~a~ 91 (256)
T TIGR00688 59 --------------------------------------------ERLK---RIQKRPLILSLLLCGLLIGFNWWLFIWAV 91 (256)
T ss_pred --------------------------------------------HHHh---CcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 01112222233334445667889999999
Q ss_pred hccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCccccccccccccccchhhHHHHHHH
Q 015504 167 ANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWAADEFLSASESRRHNITGDIFGLLS 246 (405)
Q Consensus 167 ~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~s 246 (405)
+++++++++++.+++|+|+++++++++|||++++++++++++++|++++..+++ + .. .+++++
T Consensus 92 ~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-----------~--~~----~~~l~a 154 (256)
T TIGR00688 92 NNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG-----------S--LP----WEALVL 154 (256)
T ss_pred HcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-----------C--ch----HHHHHH
Confidence 999999999999999999999999999999999999999999999998754321 0 11 467899
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHHHHHHHHHHHHHHHH
Q 015504 247 AITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLLLNGFVGSVLSDY 326 (405)
Q Consensus 247 a~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~il~~g~~~t~l~~~ 326 (405)
+++||.|.+..|+..+++ . . ....+ .+.......+. ....+.+. .........|..+++.|++ +.++|.
T Consensus 155 a~~~a~~~i~~~~~~~~~-~-~--~~~~~--~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~l~~~g~~-t~i~~~ 223 (256)
T TIGR00688 155 AFSFTAYGLIRKALKNTD-L-A--GFCLE--TLSLMPVAIYY---LLQTDFAT-VQQTNPFPIWLLLVLAGLI-TGTPLL 223 (256)
T ss_pred HHHHHHHHHHHhhcCCCC-c-c--hHHHH--HHHHHHHHHHH---HHHhccCc-ccccCchhHHHHHHHHHHH-HHHHHH
Confidence 999999999999976532 1 1 11111 11111111111 11111111 1111112367777888876 889999
Q ss_pred HHHHHHHhhchHHHHHHhhchHHHHHHHHHHH
Q 015504 327 FWALSVVWTTPLVATLGMSLTMPLAMVADMVI 358 (405)
Q Consensus 327 l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~ 358 (405)
+|+.++|+.++.++++..+++|+++++++++.
T Consensus 224 l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 224 AFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998764
No 15
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.88 E-value=1.3e-22 Score=173.28 Aligned_cols=242 Identities=16% Similarity=0.281 Sum_probs=206.6
Q ss_pred hhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhc
Q 015504 132 VLEQRSELSSWAIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAG 211 (405)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~G 211 (405)
....+..+..|.+++....+.++|..+||.|..|++..+++.++.++.+...|+++++++.+++|+...|+++.++++.|
T Consensus 40 ~FGe~kG~nik~~~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~G 119 (290)
T KOG4314|consen 40 IFGEDKGFNIKLFFIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGG 119 (290)
T ss_pred HhccccCceeeeeeeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCc
Confidence 34444456666666667777788999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 015504 212 VAMTTVGKTWAADEFLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWP 291 (405)
Q Consensus 212 v~ll~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (405)
++++++.|.. ..+.+.|+.+++.+|...|+|.++.|+...+ ....+...+++..|.+++.+.|....+
T Consensus 120 iVmiay~DN~-----------~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGn-An~Gdaa~FmS~LGF~NL~~~~~~~lI 187 (290)
T KOG4314|consen 120 IVMIAYADNE-----------HADEIIGIACAVGSAFMAALYKVLFKMFIGN-ANFGDAAHFMSCLGFFNLCFISFPALI 187 (290)
T ss_pred EEEEEeccch-----------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999988762 2347899999999999999999999999884 445677888999999999998877778
Q ss_pred HhhcCCCCCcc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHH
Q 015504 292 LNAAGIEPPFR-FPHSQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFG 370 (405)
Q Consensus 292 ~~~~~~e~~~~-~~~~~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG 370 (405)
+.++|.|. ++ +.. ..|..++..+.+ +.....+.+.++..+.|...|+++.+.+|..+..|.++.+-.++...+.|
T Consensus 188 L~~T~VE~-~qsFA~--~PWG~l~G~A~L-~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~ 263 (290)
T KOG4314|consen 188 LAFTGVEH-LQSFAA--APWGCLCGAAGL-SLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAA 263 (290)
T ss_pred HHHhchHH-HHHHhh--CCchhhhhHHHH-HHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHH
Confidence 88999885 32 222 226566665554 55667888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCchhhh
Q 015504 371 CLQVFAGFIIANLSDKFSA 389 (405)
Q Consensus 371 ~~lI~~g~~l~~~~~~~~~ 389 (405)
.++|+.|+++...++.+++
T Consensus 264 T~iI~i~FiLiiiP~d~~e 282 (290)
T KOG4314|consen 264 TCIICIGFILIIIPEDKDE 282 (290)
T ss_pred HHHHHHhHHheecccchhh
Confidence 9999999999999876543
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.85 E-value=2.6e-19 Score=170.40 Aligned_cols=223 Identities=14% Similarity=0.131 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhh-hhHHHHHHHHHHhccccchHHH----HHHHHHhhhceEEEE
Q 015504 142 WAIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTS-TSGLFTLFFGALLGQDSITIAK----LVAVFISMAGVAMTT 216 (405)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~-~~pv~~~ils~l~~~er~~~~~----~~~i~l~~~Gv~ll~ 216 (405)
++.+..+++++..|..+|++|+.+.++++++.+..+.+ ++++++.+++.+++|||.++++ ++|++++++|++++.
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 46777889999999999999999999999999999988 8899999999999999999999 999999999999998
Q ss_pred ecCCCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015504 217 VGKTWAADEFLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAG 296 (405)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (405)
..+..+..+ +...+...|++++++++++|+.|.+..|+.. .++............+.+.++. + +. .
T Consensus 136 ~~~~~~~~~-----~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~-~---~~--~- 201 (290)
T TIGR00776 136 RSKDKSAGI-----KSEFNFKKGILLLLMSTIGYLVYVVVAKAFG--VDGLSVLLPQAIGMVIGGIIFN-L---GH--I- 201 (290)
T ss_pred ecccccccc-----ccccchhhHHHHHHHHHHHHHHHHHHHHHcC--CCcceehhHHHHHHHHHHHHHH-H---HH--h-
Confidence 764321100 0002236799999999999999999999863 2322221111111111222211 1 11 0
Q ss_pred CCCCccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHH----HHH
Q 015504 297 IEPPFRFPHSQSVGEVLLLNGFVGSVLSDYFWALSVV-WTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYI----FGC 371 (405)
Q Consensus 297 ~e~~~~~~~~~~~~~~il~~g~~~t~l~~~l~~~~~~-~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~i----iG~ 371 (405)
..+ +. .....|.. +..|++ +.+++.+|..+.+ +.++..+++...++|+++.+++++++||+.+..++ +|+
T Consensus 202 ~~~--~~-~~~~~~~~-~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~ 276 (290)
T TIGR00776 202 LAK--PL-KKYAILLN-ILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGI 276 (290)
T ss_pred ccc--ch-HHHHHHHH-HHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHH
Confidence 001 11 12233434 448887 8999999999999 99999999999999888999999999999999999 999
Q ss_pred HHHHHHHHHhhc
Q 015504 372 LQVFAGFIIANL 383 (405)
Q Consensus 372 ~lI~~g~~l~~~ 383 (405)
++++.|..+...
T Consensus 277 ~lIi~~~~l~~~ 288 (290)
T TIGR00776 277 ILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 17
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.78 E-value=7.7e-19 Score=156.97 Aligned_cols=218 Identities=15% Similarity=0.164 Sum_probs=170.0
Q ss_pred HHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCcccc-ccccccccccc
Q 015504 158 TEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWAADE-FLSASESRRHN 236 (405)
Q Consensus 158 ~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~~~-~~~~~~~~~~~ 236 (405)
+....++|++|.+.++++++..++|+||.+++|+++|||+++...++..+.+.|++++..+...=.++ +..++...+..
T Consensus 110 gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~ 189 (346)
T KOG4510|consen 110 GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYD 189 (346)
T ss_pred HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccccccc
Confidence 44455799999999999999999999999999999999999999999999999999998654311110 00011123456
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHHHHHH
Q 015504 237 ITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLLLN 316 (405)
Q Consensus 237 ~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~il~~ 316 (405)
..|...++.+++.-|--.++.|+.-++.+...++.. ++ +++++.... .....| .+.+|+....|+..+.+
T Consensus 190 ~~gt~aai~s~lf~asvyIilR~iGk~~h~~msvsy-f~---~i~lV~s~I---~~~~ig---~~~lP~cgkdr~l~~~l 259 (346)
T KOG4510|consen 190 IPGTVAAISSVLFGASVYIILRYIGKNAHAIMSVSY-FS---LITLVVSLI---GCASIG---AVQLPHCGKDRWLFVNL 259 (346)
T ss_pred CCchHHHHHhHhhhhhHHHHHHHhhccccEEEEehH-HH---HHHHHHHHH---HHhhcc---ceecCccccceEEEEEe
Confidence 678888888888888888888988775554444332 22 223222111 222233 27899988899988889
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCch
Q 015504 317 GFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDK 386 (405)
Q Consensus 317 g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~ 386 (405)
|++ ..++..+...+++.-.+..+++..+...++|.+++++++|+.++++.++|+++|+.+.+.+...+.
T Consensus 260 Gvf-gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 260 GVF-GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred hhh-hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence 987 688999999999999999999999999999999999999999999999999999999888777544
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.78 E-value=9.4e-17 Score=154.06 Aligned_cols=239 Identities=22% Similarity=0.262 Sum_probs=177.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecC
Q 015504 140 SSWAIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGK 219 (405)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~ 219 (405)
+.++.... ++++++++.+-+.|++|+|.+...++.++.|+++++++.+++|+|.++.+++++++..+|+++...++
T Consensus 63 ~~~~~~~~----~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~ 138 (303)
T PF08449_consen 63 PLKKYAIL----SFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSD 138 (303)
T ss_pred hHHHHHHH----HHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecc
Confidence 44554444 34566778888999999999999999999999999999999999999999999999999999999876
Q ss_pred CCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 015504 220 TWAADEFLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEP 299 (405)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 299 (405)
..+...+. ........|+++.+++.++.|++.+..||..++++.. ....+.+..++++++.++....+......+
T Consensus 139 ~~~~~~~~---~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~--~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~ 213 (303)
T PF08449_consen 139 SSSSSSSN---SSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKS--PWELMFYTNLFSLPFLLILLFLLPTGEFRS 213 (303)
T ss_pred cccccccc---cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHHHHHHHhhHhhH
Confidence 54322110 1112233499999999999999999999998754332 233444445555555443333311000100
Q ss_pred Ccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Q 015504 300 PFR-FPHSQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGF 378 (405)
Q Consensus 300 ~~~-~~~~~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~ 378 (405)
..+ ....+..+..++...+ +..++....+..+++.+|...++..++.-+++++++++++|+++++.+++|.++++.|.
T Consensus 214 ~~~f~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~ 292 (303)
T PF08449_consen 214 AIRFISAHPSVLLYLLLFSL-TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGI 292 (303)
T ss_pred HHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHH
Confidence 011 1112334555555555 36777788888999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCchhh
Q 015504 379 IIANLSDKFS 388 (405)
Q Consensus 379 ~l~~~~~~~~ 388 (405)
.+.++.++++
T Consensus 293 ~~~~~~~~k~ 302 (303)
T PF08449_consen 293 FLYSYAKKKK 302 (303)
T ss_pred HHHHHhhccC
Confidence 9999876543
No 19
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.71 E-value=4.7e-15 Score=132.14 Aligned_cols=205 Identities=15% Similarity=0.091 Sum_probs=154.3
Q ss_pred HHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCcccccccccccccc
Q 015504 156 FITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWAADEFLSASESRRH 235 (405)
Q Consensus 156 ~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~ 235 (405)
..-|++||.+++..+-+.+..+-++-|+.+++++. + +.+..+.+.+++.|+.++.-.+.+ ..+.
T Consensus 82 g~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~s----R--r~~d~vwvaLAvlGi~lL~p~~~~----------~~~l 145 (292)
T COG5006 82 GGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLSS----R--RLRDFVWVALAVLGIWLLLPLGQS----------VWSL 145 (292)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccHHHHHHHhc----c--chhhHHHHHHHHHHHHhheeccCC----------cCcC
Confidence 34688999999999999999999999999888764 3 345566677788888888754421 1234
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHHHHH
Q 015504 236 NITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLLL 315 (405)
Q Consensus 236 ~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~il~ 315 (405)
...|..+++.++.||+.|.+..+|.-+.++....+..-+. +..++..|+ -..+..+ .+ .++......+.
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~----vAaviv~Pi----g~~~ag~--~l-~~p~ll~laLg 214 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGML----VAALIVLPI----GAAQAGP--AL-FSPSLLPLALG 214 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHH----HHHHHHhhh----hhhhcch--hh-cChHHHHHHHH
Confidence 5689999999999999999999998753333333322222 222222222 1111221 11 12345666778
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCchh
Q 015504 316 NGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDKF 387 (405)
Q Consensus 316 ~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~~ 387 (405)
.+++++.+.|.+-+.++++.++..-++.+++||.++++.+++++||++|..|++|..+|+.+..-.....|+
T Consensus 215 vavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~ 286 (292)
T COG5006 215 VAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK 286 (292)
T ss_pred HHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence 899999999999999999999999999999999999999999999999999999999999988866665443
No 20
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.65 E-value=6.5e-14 Score=128.14 Aligned_cols=219 Identities=15% Similarity=0.129 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCcccc
Q 015504 146 KCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWAADE 225 (405)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~~~ 225 (405)
......+.+...+...|.+|...-.+-++++=+...|++..+++.+++|||+++.|+++++++.+||.......+
T Consensus 73 ~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g----- 147 (293)
T COG2962 73 LMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG----- 147 (293)
T ss_pred HHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC-----
Confidence 334445566777888999999999999999999999999999999999999999999999999999999876543
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCC
Q 015504 226 FLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPH 305 (405)
Q Consensus 226 ~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 305 (405)
+-.+ .++.=|++|++|..+-|+..- + ...-+....+...+ +......+.+.++.+....
T Consensus 148 --------~lpw----val~la~sf~~Ygl~RK~~~v--~----a~~g~~lE~l~l~p---~al~yl~~l~~~~~~~~~~ 206 (293)
T COG2962 148 --------SLPW----VALALALSFGLYGLLRKKLKV--D----ALTGLTLETLLLLP---VALIYLLFLADSGQFLQQN 206 (293)
T ss_pred --------CCcH----HHHHHHHHHHHHHHHHHhcCC--c----hHHhHHHHHHHHhH---HHHHHHHHHhcCchhhhcC
Confidence 1122 345567889999877665432 2 12222222222111 1112222222221111112
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCc
Q 015504 306 SQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSD 385 (405)
Q Consensus 306 ~~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~ 385 (405)
+...+..++..|.+ |.++..++..+.++++-...++..+.+|.+-.+++++++||+++..+++..++|-.|++++..+.
T Consensus 207 ~~~~~~LLv~aG~v-TavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 207 ANSLWLLLVLAGLV-TAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred CchHHHHHHHhhHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888887 89999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhhhhH
Q 015504 386 KFSAKI 391 (405)
Q Consensus 386 ~~~~~~ 391 (405)
..+++|
T Consensus 286 l~~~r~ 291 (293)
T COG2962 286 LYTARK 291 (293)
T ss_pred HHHHhh
Confidence 544433
No 21
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.65 E-value=3.1e-14 Score=131.58 Aligned_cols=223 Identities=19% Similarity=0.221 Sum_probs=160.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecC
Q 015504 140 SSWAIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGK 219 (405)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~ 219 (405)
.+++.+++++. +++|.+.|.+.+.++++.+++...++.++-.++|++++++++|+|+++++|.++++.++|+.++..++
T Consensus 13 ~~~~~~~~~vP-A~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~ 91 (244)
T PF04142_consen 13 SPKDTLKLAVP-ALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS 91 (244)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence 45566666655 67899999999999999999999999999999999999999999999999999999999999998766
Q ss_pred CCccccccc----cccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 015504 220 TWAADEFLS----ASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDV-QKFFGYIGLFTFLGLWWLIWPLNA 294 (405)
Q Consensus 220 ~~~~~~~~~----~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 294 (405)
....+.+.+ ......+...|.++.++++++.|+..++.+|..|+.+..... ...+...|++...+ . ...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~---~---~~~ 165 (244)
T PF04142_consen 92 SQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLL---A---LLL 165 (244)
T ss_pred ccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH---H---Hhc
Confidence 543211100 001234578999999999999999999999999864322211 22222223222221 1 111
Q ss_pred cCCCC----CccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHH
Q 015504 295 AGIEP----PFRFPHSQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFG 370 (405)
Q Consensus 295 ~~~e~----~~~~~~~~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG 370 (405)
.+.++ .+.-..+...|..++. ..++-.+....+|+.+...=+....++.+++.+.+++++|.+++...++|
T Consensus 166 ~~~~~~~~~g~f~G~~~~~~~~i~~-----~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg 240 (244)
T PF04142_consen 166 SDGSAISESGFFHGYSWWVWIVIFL-----QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLG 240 (244)
T ss_pred ccccccccCCchhhcchHHHHHHHH-----HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhh
Confidence 12211 0101112223333333 34444556678899999999999999999999999999999999999999
Q ss_pred HHHH
Q 015504 371 CLQV 374 (405)
Q Consensus 371 ~~lI 374 (405)
+.++
T Consensus 241 ~~~V 244 (244)
T PF04142_consen 241 AALV 244 (244)
T ss_pred eecC
Confidence 8764
No 22
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.61 E-value=6.6e-13 Score=124.93 Aligned_cols=234 Identities=18% Similarity=0.199 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCC
Q 015504 141 SWAIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKT 220 (405)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~ 220 (405)
+++..+.++. +++|.+.|.+++.++.+.++++..+..++-...|++++.+++++|+++++|.++++.++|+.++-.+..
T Consensus 89 ~~~~lk~~vP-a~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~ 167 (345)
T KOG2234|consen 89 PRETLKVSVP-ALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSL 167 (345)
T ss_pred hHHHHHHHHH-HHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC
Confidence 3456666666 558999999999999999999999999999999999999999999999999999999999999984433
Q ss_pred CccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 015504 221 WAADEFLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKV-DVQKFFGYIGLFTFLGLWWLIWPLNAAGIEP 299 (405)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 299 (405)
.+.++. ......+...|....+.+++..++-.++.+|..++..... -....+...|++...+ .....++|+
T Consensus 168 ~~~~a~--~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l------~~~~~d~~~ 239 (345)
T KOG2234|consen 168 SPTGAK--SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLL------TILLQDGEA 239 (345)
T ss_pred CCCCcc--CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH------HHhhccccc
Confidence 222111 0123456889999999999999999999999997433221 1233333334332221 122233442
Q ss_pred C----ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 015504 300 P----FRFPHSQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVF 375 (405)
Q Consensus 300 ~----~~~~~~~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~ 375 (405)
. +-..++...|..++.+++- -.+....+|+.+...=....++.++++.+.++.++|-++|....+|..+|+
T Consensus 240 i~~~gff~G~s~~vw~vVl~~a~g-----GLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi 314 (345)
T KOG2234|consen 240 INEYGFFYGYSSIVWLVVLLNAVG-----GLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVI 314 (345)
T ss_pred cccCCccccccHHHHHHHHHHhcc-----chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence 1 1123344556655555543 344456778888888888888888999999999999999999999999999
Q ss_pred HHHHHhhcCchhh
Q 015504 376 AGFIIANLSDKFS 388 (405)
Q Consensus 376 ~g~~l~~~~~~~~ 388 (405)
.++.++...++.+
T Consensus 315 ~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 315 LSIFLYSLYPARD 327 (345)
T ss_pred HHHHHhhcCCccc
Confidence 9999999766654
No 23
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.60 E-value=2.7e-13 Score=122.41 Aligned_cols=229 Identities=18% Similarity=0.174 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCccccccccc
Q 015504 151 LTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWAADEFLSAS 230 (405)
Q Consensus 151 ~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~~~~~~~~ 230 (405)
-+++...+..+.+.|+.+|+++..+++.....+|+.+++.-+++++++.++|+|+.....|++.+...|....+++ .
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p---~ 168 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDP---Y 168 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCC---c
Confidence 3456666777888999999999999999999999999999999999999999999999999999987654322111 1
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccC-CCc---
Q 015504 231 ESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRF-PHS--- 306 (405)
Q Consensus 231 ~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~--- 306 (405)
.+.+....|+++.+++.+.-|++.++.+|..++. .+.+....++.|+++++++.....++++......+.- |..
T Consensus 169 ~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~--nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~e 246 (372)
T KOG3912|consen 169 TDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKS--NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLE 246 (372)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHhhhhhc--cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchh
Confidence 3446678999999999999999999999988743 4556777888888887766555555555322211211 110
Q ss_pred --hhHHHH-----HHHHHHHHHHHHHHHHHH----HHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 015504 307 --QSVGEV-----LLLNGFVGSVLSDYFWAL----SVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVF 375 (405)
Q Consensus 307 --~~~~~~-----il~~g~~~t~l~~~l~~~----~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~ 375 (405)
...|.. .++..+.+..++..+++. --|..++++-++.-.+...+-.+++.....|.+...++.|.++.+
T Consensus 247 D~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi 326 (372)
T KOG3912|consen 247 DWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILI 326 (372)
T ss_pred hHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 233333344444444443 356788888898888888888888888899999999999999999
Q ss_pred HHHHHhhcC
Q 015504 376 AGFIIANLS 384 (405)
Q Consensus 376 ~g~~l~~~~ 384 (405)
.|.++++-.
T Consensus 327 ~Gi~lY~~i 335 (372)
T KOG3912|consen 327 MGIILYNQI 335 (372)
T ss_pred HHHHHHHHH
Confidence 999999854
No 24
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.59 E-value=7.7e-15 Score=138.75 Aligned_cols=230 Identities=18% Similarity=0.214 Sum_probs=174.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEec
Q 015504 139 LSSWAIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVG 218 (405)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~ 218 (405)
...++++.+++..++ +.++-+.++.+.+++...++-+++|+++.++++++.+|+.+......++....|+.+-+..
T Consensus 81 ~~~~~llpl~~~~~~----~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~ 156 (316)
T KOG1441|consen 81 LPLRTLLPLGLVFCI----SHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVT 156 (316)
T ss_pred cchHHHHHHHHHHHH----HHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeec
Confidence 355666666666543 4445569999999999999999999999999999999999999999999999999999875
Q ss_pred CCCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHH-HHHHHHhhcCC
Q 015504 219 KTWAADEFLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLW-WLIWPLNAAGI 297 (405)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 297 (405)
+. +-+..|.+.++++.+..+++.++.|+..++.....+....+.+.+-+++..+. |...+..-...
T Consensus 157 e~-------------~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~ 223 (316)
T KOG1441|consen 157 EL-------------SFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF 223 (316)
T ss_pred cc-------------cccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccce
Confidence 43 34789999999999999999999999986333344444556666666666665 54333211111
Q ss_pred CCCccC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 015504 298 EPPFRF-PHSQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFA 376 (405)
Q Consensus 298 e~~~~~-~~~~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~ 376 (405)
..+.. +.+-. ....+++. ++....+...+..+.+++|.+-++...+.-.++++.++++++++.++.+..|+++.++
T Consensus 224 -~~~~~~~~~~~-~~~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~ 300 (316)
T KOG1441|consen 224 -VGFLTAPWFVT-FLILLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAIL 300 (316)
T ss_pred -eeeeccccchh-hHHHHHHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHH
Confidence 00011 22222 22334444 3456667777888999999999999999988899999999999999999999999999
Q ss_pred HHHHhhcCchhh
Q 015504 377 GFIIANLSDKFS 388 (405)
Q Consensus 377 g~~l~~~~~~~~ 388 (405)
|++++++.+.++
T Consensus 301 Gv~~Y~~~k~~~ 312 (316)
T KOG1441|consen 301 GVFLYSRAKLKE 312 (316)
T ss_pred HHHHHHHHhhhh
Confidence 999998865433
No 25
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.49 E-value=8e-15 Score=130.59 Aligned_cols=217 Identities=18% Similarity=0.210 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCccccccc
Q 015504 149 LYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWAADEFLS 228 (405)
Q Consensus 149 ~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~~~~~~ 228 (405)
++.++...-+|++-..|.|||+.+...++-+-..+.+.+++|+++|-|-.+.|+.|+++|+.|++++.+.|..+.|..
T Consensus 82 illa~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~a-- 159 (336)
T KOG2766|consen 82 ILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRA-- 159 (336)
T ss_pred hheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecccccc--
Confidence 334445556777777899999999999999999999999999999999999999999999999999999876543322
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc---CCC
Q 015504 229 ASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFR---FPH 305 (405)
Q Consensus 229 ~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---~~~ 305 (405)
.+++...||.+++++|-+||+.++..+.+.++ .+...++++.|+++.++...= .. .|. .+ +.+
T Consensus 160 ---ggsnp~~GD~lvi~GATlYaVSNv~EEflvkn----~d~~elm~~lgLfGaIIsaIQ----~i--~~~-~~~~tl~w 225 (336)
T KOG2766|consen 160 ---GGSNPVKGDFLVIAGATLYAVSNVSEEFLVKN----ADRVELMGFLGLFGAIISAIQ----FI--FER-HHVSTLHW 225 (336)
T ss_pred ---CCCCCccCcEEEEecceeeeeccccHHHHHhc----CcHHHHHHHHHHHHHHHHHHH----Hh--hhc-cceeeEee
Confidence 34567899999999999999999999998874 345667777788877764321 11 221 11 222
Q ss_pred chhHHHHHHHH-HHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcC
Q 015504 306 SQSVGEVLLLN-GFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLS 384 (405)
Q Consensus 306 ~~~~~~~il~~-g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~ 384 (405)
+ |....+. ..++..+-|.+.-..+|..+++...+.....-..+.++ ..+|-+.++..++..+.+..|++++..+
T Consensus 226 ~---~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 226 D---SAIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred h---HHHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 2 2222222 23345666777777888889988887666655567776 5578889999999999999999998655
Q ss_pred ch
Q 015504 385 DK 386 (405)
Q Consensus 385 ~~ 386 (405)
++
T Consensus 301 e~ 302 (336)
T KOG2766|consen 301 EK 302 (336)
T ss_pred cc
Confidence 44
No 26
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.36 E-value=5.5e-11 Score=109.12 Aligned_cols=223 Identities=20% Similarity=0.202 Sum_probs=153.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEe
Q 015504 138 ELSSWAIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTV 217 (405)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~ 217 (405)
..++++.++-....++.-.+.--+-+++++|++.+..++.-+++++|+.+++.+|.-||+++.-..-+.+..+|+++.++
T Consensus 77 ~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~ 156 (349)
T KOG1443|consen 77 VLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTY 156 (349)
T ss_pred CCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEe
Confidence 34555555444444444444444557999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCC----cch----HHHHHHHHHHHHHHHHHHHH
Q 015504 218 GKTWAADEFLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGD----KVD----VQKFFGYIGLFTFLGLWWLI 289 (405)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~ 289 (405)
.+. +-...|..+.++++++-|+--.+.++.+++.+. +.+ .+..+++ .+.|..
T Consensus 157 KsT-------------qf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~-------~Ll~~~ 216 (349)
T KOG1443|consen 157 KST-------------QFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSI-------GLLPLS 216 (349)
T ss_pred ccc-------------ceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHH-------HHHHHH
Confidence 754 236789999999999998888887777765431 111 1222221 111221
Q ss_pred HHHhhcCCC-----CCccCCCchhHHHHHHHHHHHHHHHHHHHH---HHHHHhhchHHHHHHhhchHHHHHHHHHHHcCC
Q 015504 290 WPLNAAGIE-----PPFRFPHSQSVGEVLLLNGFVGSVLSDYFW---ALSVVWTTPLVATLGMSLTMPLAMVADMVIHGR 361 (405)
Q Consensus 290 ~~~~~~~~e-----~~~~~~~~~~~~~~il~~g~~~t~l~~~l~---~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge 361 (405)
+.+-|.+ +.+........+..+...++. ..+++.+- +....+++..+.|+..-.......+++.++.++
T Consensus 217 --l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~-g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d 293 (349)
T KOG1443|consen 217 --LLFEGLHLITSSSIFRFQDTGLILRVIGLISLG-GLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKD 293 (349)
T ss_pred --HHHcccccchhhhHHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhc
Confidence 1111111 111111122234433333332 23333222 234567888888888888888899999999999
Q ss_pred CccHHHHHHHHHHHHHHHHhhc
Q 015504 362 HYSAIYIFGCLQVFAGFIIANL 383 (405)
Q Consensus 362 ~~~~~~iiG~~lI~~g~~l~~~ 383 (405)
+++...++|..+...|+.....
T Consensus 294 ~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 294 QLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred chhhhHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999833
No 27
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.21 E-value=4.3e-11 Score=105.75 Aligned_cols=221 Identities=18% Similarity=0.185 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCcccccccccc
Q 015504 152 TPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWAADEFLSASE 231 (405)
Q Consensus 152 ~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~~~~~~~~~ 231 (405)
..-|.+++..-+.|++|.+-.+..+--++-|+-++++++++.+++.+++|-.++++.++|+++..+.+......
T Consensus 92 s~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~------ 165 (337)
T KOG1580|consen 92 SASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGA------ 165 (337)
T ss_pred HHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCC------
Confidence 34566777777899999999999999999999999999999999999999999999999999999875432111
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc----CCCch
Q 015504 232 SRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFR----FPHSQ 307 (405)
Q Consensus 232 ~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~----~~~~~ 307 (405)
.......|.++.+++-..-++......+....+.+ ...++ +...-+++.+.+... +.++| |- ++ ....+
T Consensus 166 e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~-~g~~M-M~~~NlwStL~Lg~g---~lfTG-El-weF~yF~~RhP 238 (337)
T KOG1580|consen 166 EDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQR-TGTSM-MFYTNLWSTLYLGAG---LLFTG-EL-WEFFYFVQRHP 238 (337)
T ss_pred cccccchHHHHHHHHHHhcccchhHHHHHHHhhcc-Cchhh-HHHHHHHHHHHhhhh---heehh-hH-HHHHHHHHhcc
Confidence 12346789999999999999999998887664332 22222 222344444332111 11222 21 11 11124
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCch
Q 015504 308 SVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDK 386 (405)
Q Consensus 308 ~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~ 386 (405)
..|+-+...++ ++.++..+.+.-+..-+|..-|+.....-.++++.++++++.+++.+||+|.++++.|...-....+
T Consensus 239 ~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK 316 (337)
T KOG1580|consen 239 YVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK 316 (337)
T ss_pred HHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence 56777777776 5899999999999999999999998888889999999999999999999999999999887665443
No 28
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.16 E-value=4e-10 Score=90.56 Aligned_cols=134 Identities=19% Similarity=0.170 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCC--CchhHHHHHHHH
Q 015504 239 GDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFP--HSQSVGEVLLLN 316 (405)
Q Consensus 239 G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~il~~ 316 (405)
..++++++|+.+++..++.|--.++.++...+. .-..+.++.+.. .....| .++.+ .+++.|..++..
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~-IRtiVi~~~l~~------v~~~~g---~~~~~~~~~~k~~lflilS 73 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATT-IRTIVILIFLLI------VLLVTG---NWQAGGEIGPKSWLFLILS 73 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHH-HHHHHHHHHHHH------HHHhcC---ceecccccCcceehhhhHH
Confidence 468999999999999999998777544443322 222222221111 222333 13333 346778888888
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhc
Q 015504 317 GFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANL 383 (405)
Q Consensus 317 g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~ 383 (405)
|+ .++++..+|+.+++.-.+..+.....+.+.++++++++++||+++..+++|+++|++|.+++.+
T Consensus 74 Gl-a~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 74 GL-AGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HH-HHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 85 6899999999999999999999999999999999999999999999999999999999988754
No 29
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.11 E-value=6.7e-09 Score=96.05 Aligned_cols=218 Identities=15% Similarity=0.139 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHh-hhhHHHHHHHHHHhccccchHHH----HHHHHHhhhceEEEE
Q 015504 142 WAIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLT-STSGLFTLFFGALLGQDSITIAK----LVAVFISMAGVAMTT 216 (405)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~-~~~pv~~~ils~l~~~er~~~~~----~~~i~l~~~Gv~ll~ 216 (405)
.+.+..+++.|.+|.++|..++.+.++..++.+.-+. ..+-+.+.++++++++|.-+..+ .+|+++.++|+++.+
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 4677888999999999999999999999999999996 56778899999999999877554 448899999999999
Q ss_pred ecCCCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015504 217 VGKTWAADEFLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAG 296 (405)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (405)
..|..+... ++..+...|....+++.+.|..|.++.|-..- +..+....... |.+...+ .+....
T Consensus 122 ~~~~~~~~~-----~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~~~---~~~~~~lPqai-Gm~i~a~------i~~~~~ 186 (269)
T PF06800_consen 122 YQDKKSDKS-----SSKSNMKKGILALLISTIGYWIYSVIPKAFHV---SGWSAFLPQAI-GMLIGAF------IFNLFS 186 (269)
T ss_pred ccccccccc-----ccccchhhHHHHHHHHHHHHHHHHHHHHhcCC---ChhHhHHHHHH-HHHHHHH------HHhhcc
Confidence 876543211 12345678999999999999999999876432 22333222222 2222111 111111
Q ss_pred CCCCccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccH----HHHHHHH
Q 015504 297 IEPPFRFPHSQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSA----IYIFGCL 372 (405)
Q Consensus 297 ~e~~~~~~~~~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~----~~iiG~~ 372 (405)
+ .. ......|. -+..|++ ..++..++..+.+..+...+=...-+.++++.+.+.+++||+=+. ..++|.+
T Consensus 187 -~--~~-~~~k~~~~-nil~G~~-w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~ 260 (269)
T PF06800_consen 187 -K--KP-FFEKKSWK-NILTGLI-WGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLI 260 (269)
T ss_pred -c--cc-ccccchHH-hhHHHHH-HHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHH
Confidence 1 11 11122343 4555665 788999999999999988888888888889999999999998665 4567888
Q ss_pred HHHHHHHH
Q 015504 373 QVFAGFII 380 (405)
Q Consensus 373 lI~~g~~l 380 (405)
+++.|.++
T Consensus 261 Liv~G~il 268 (269)
T PF06800_consen 261 LIVIGAIL 268 (269)
T ss_pred HHHHhhhc
Confidence 88888764
No 30
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.08 E-value=5.8e-08 Score=89.52 Aligned_cols=223 Identities=15% Similarity=0.143 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCccccccccccccc
Q 015504 155 WFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWAADEFLSASESRR 234 (405)
Q Consensus 155 ~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~ 234 (405)
-.++.++.+.||+|++-.+.++--++-.+-+++.+.++.|+|.+..+-+...+...|+.+.+..+.++... +....
T Consensus 93 n~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~----~~g~~ 168 (327)
T KOG1581|consen 93 NTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSS----KSGRE 168 (327)
T ss_pred hhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCcc----ccCCC
Confidence 34467788999999999999999999999999999999999999999999999999999988765432111 12234
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc-CCCchhHHHHH
Q 015504 235 HNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFR-FPHSQSVGEVL 313 (405)
Q Consensus 235 ~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~~~~i 313 (405)
+..+|+.+....-+.-++.+....++.++ ...+...++..+-++..+.-. ...+.....+++ .+ ....+..++-+
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~--~k~s~~~mM~~vNLf~~i~~~-~~li~qg~~~~a-v~F~~~hp~~~~Di 244 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKK--YKVSSLHMMFGVNLFSAILNG-TYLILQGHLLPA-VSFIKEHPDVAFDI 244 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhcc--CCccHhHHHHHHHHHHHHHHH-HhhhcCCCCchH-HHHHHcChhHHHHH
Confidence 67899999999999999999999998873 333333334434454444211 111111111111 11 12234556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCch
Q 015504 314 LLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDK 386 (405)
Q Consensus 314 l~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~ 386 (405)
+..... ..++..+.+.-++.-+|..-+.++...-.++++++.+.+|.+.+..+++|..+++.|+.+-.+-++
T Consensus 245 ~l~s~~-gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~ 316 (327)
T KOG1581|consen 245 LLYSTC-GAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKK 316 (327)
T ss_pred HHHHHh-hhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHH
Confidence 666654 678888888899999999999999999999999999999999999999999999999988766443
No 31
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.06 E-value=1.3e-09 Score=89.81 Aligned_cols=125 Identities=17% Similarity=0.200 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHHHHHHHHHHHHHHHHH
Q 015504 248 ITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLLLNGFVGSVLSDYF 327 (405)
Q Consensus 248 ~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~il~~g~~~t~l~~~l 327 (405)
++||.+.+..|+..++.+ .... ..+....+.+ +.+. ....+.+ .....+...+...++.+++++.+++.+
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~---~~~~~~~~~~-~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSI---TFWRFLIAGI-LLIL---LLILGRK--PFKNLSPRQWLWLLFLGLLGTALAYLL 70 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHH---HHHHHHHHHH-HHHH---HHhhccc--cccCCChhhhhhhhHhhccceehHHHH
Confidence 468899999999887532 2222 2222222221 1111 1111111 112223345666788888888999999
Q ss_pred HHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhh
Q 015504 328 WALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIAN 382 (405)
Q Consensus 328 ~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~ 382 (405)
++.+++++++..+++...++|+++.++++++++|+++..+++|+++++.|+++..
T Consensus 71 ~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 71 YFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998875
No 32
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=2.7e-08 Score=92.70 Aligned_cols=227 Identities=19% Similarity=0.170 Sum_probs=158.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecC
Q 015504 140 SSWAIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGK 219 (405)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~ 219 (405)
..|+++...++. ++..+.-..+++|.+++..+++....|+++++...+++|.|++...+.++....+|......+|
T Consensus 76 ~~kk~~P~~~lf----~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d 151 (314)
T KOG1444|consen 76 TAKKWFPVSLLF----VGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTD 151 (314)
T ss_pred HHHHHccHHHHH----HHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccc
Confidence 445666655553 3333444689999999999999999999999999999999999999999999999998877665
Q ss_pred CCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhhcC-C
Q 015504 220 TWAADEFLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGD-KVDVQKFFGYIGLFTFLGLWWLIWPLNAAG-I 297 (405)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 297 (405)
. +....|+.|++...+.-+.+.+..|+..+...- ..++ +.+-.++.++.+.. ....+| +
T Consensus 152 ~-------------sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~l---v~yNnl~~L~~l~~---~~~~~ge~ 212 (314)
T KOG1444|consen 152 L-------------SFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGL---VFYNNLLSLPPLLI---LSFITGEL 212 (314)
T ss_pred c-------------eecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeE---EeehhHHHHHHHHH---HHHHhcch
Confidence 3 224459999999999999999999998764321 1111 11111121111110 111111 0
Q ss_pred C-CCccC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 015504 298 E-PPFRF--PHSQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQV 374 (405)
Q Consensus 298 e-~~~~~--~~~~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI 374 (405)
+ -..+. ......+..+...|+++-++.|. -.+..+..|++.-++......-...+...++.|++.++..++|..+-
T Consensus 213 ~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~-s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~ 291 (314)
T KOG1444|consen 213 DALSLNFDNWSDSSVLVVMLLSCVMGFGISYT-SFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVG 291 (314)
T ss_pred HHHHhhcccccchhHHHHHHHHHHHHHHHHHH-HHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHH
Confidence 0 00111 11234566677777776666554 45777888888887777666667888888899999999999999999
Q ss_pred HHHHHHhhcCchhhhh
Q 015504 375 FAGFIIANLSDKFSAK 390 (405)
Q Consensus 375 ~~g~~l~~~~~~~~~~ 390 (405)
+.|-+++++...++++
T Consensus 292 ~~ggv~Y~~~~~~~k~ 307 (314)
T KOG1444|consen 292 FFGGVLYSYATFRKKK 307 (314)
T ss_pred hhhhhHHhhhhhhhcc
Confidence 9999999987654443
No 33
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.02 E-value=1.1e-08 Score=87.78 Aligned_cols=144 Identities=19% Similarity=0.263 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCC---CCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ccCC-----CchhH
Q 015504 239 GDIFGLLSAITYGLFTVLLKKSAGSE---GDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPP-FRFP-----HSQSV 309 (405)
Q Consensus 239 G~~l~l~sa~~~a~y~v~~k~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~-----~~~~~ 309 (405)
|.++++++.++.|++.++.|+..++. ....+....+.+.+..+.+++.|............. .... .....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 78899999999999999999988752 134444455555566666665555443332221100 0011 12344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhc
Q 015504 310 GEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANL 383 (405)
Q Consensus 310 ~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~ 383 (405)
+..++..|++ ..+.+...+..+++++|...++...+..++..+++++++||+++..+++|.++.++|+++++|
T Consensus 81 ~~~~~~~~~~-~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLL-AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 5556666665 567788888999999999999999999999999999999999999999999999999998865
No 34
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.4e-10 Score=104.87 Aligned_cols=232 Identities=17% Similarity=0.204 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCC
Q 015504 142 WAIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTW 221 (405)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~ 221 (405)
+++.++++......... +++++|.+++-.-+=.++..+|+.+++++++|||-+..-..+..+.+.|-.+=.-.++
T Consensus 103 r~vlplsvVfi~mI~fn----nlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~- 177 (347)
T KOG1442|consen 103 RQVLPLSVVFILMISFN----NLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEG- 177 (347)
T ss_pred Hhhcchhheeeeehhcc----ceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheecccccc-
Confidence 34444454433332223 5889999999999999999999999999999999999888888777777655332211
Q ss_pred ccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 015504 222 AADEFLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPF 301 (405)
Q Consensus 222 ~~~~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 301 (405)
......+.|.++++.++++-|+..+..||......+ ....+..+-.+.+.++..|.+...+- ++..+
T Consensus 178 ---------~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~--~iw~lt~ynnv~a~lLflpll~lnge--~~~v~ 244 (347)
T KOG1442|consen 178 ---------STGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGD--CIWRLTAYNNVNALLLFLPLLILNGE--FQAVV 244 (347)
T ss_pred ---------ccCccchhhhHHHHHHHHHHHHHHHhhheecccccC--eehhhHHHHHHHHHHHHHHHHHHcch--HHHHc
Confidence 123457899999999999999999999987763222 12222233344455544555443322 11112
Q ss_pred cCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Q 015504 302 RFPH--SQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFI 379 (405)
Q Consensus 302 ~~~~--~~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~ 379 (405)
.+|+ ....|..+...|+++..++|.- .+-+|-++|.+-.+..+-....-.++++.+++|.-+..-|-|-++|+.|-.
T Consensus 245 ~~~~l~a~~Fw~~mtLsglfgF~mgyvT-g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~ 323 (347)
T KOG1442|consen 245 GFPHLPAIKFWILMTLSGLFGFAMGYVT-GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSL 323 (347)
T ss_pred CcccchHHHHHHHHHHHHHHHHHhhhee-eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhH
Confidence 2333 2456777777777765554332 244678899988887777777788899999999999999999999999999
Q ss_pred HhhcCchhhhhHH
Q 015504 380 IANLSDKFSAKIE 392 (405)
Q Consensus 380 l~~~~~~~~~~~~ 392 (405)
.+.+-+....++.
T Consensus 324 ~YT~vk~~em~~~ 336 (347)
T KOG1442|consen 324 AYTLVKEHEMRKA 336 (347)
T ss_pred HHHHHHHHHHHhh
Confidence 9888655444443
No 35
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.94 E-value=3.6e-07 Score=87.97 Aligned_cols=240 Identities=13% Similarity=0.064 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHH-hhhhHHHHHHHHHHhccccc-------hHHHHHHHHHhhhceE
Q 015504 142 WAIAKCSLYLTPIWFITEYFSNSALANTSVASTTVL-TSTSGLFTLFFGALLGQDSI-------TIAKLVAVFISMAGVA 213 (405)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l-~~~~pv~~~ils~l~~~er~-------~~~~~~~i~l~~~Gv~ 213 (405)
.+.+..+++++.+|..+|..++.++++..++.+.-+ ..++-++..++..++++|-. ...-.+|+++.++|++
T Consensus 70 ~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~ 149 (345)
T PRK13499 70 GSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVA 149 (345)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence 356677888999999999999999999999999988 46889999999999987643 2357789999999999
Q ss_pred EEEecCCCccccccccccccccchhhHHHHHHHHHHHHHHH-------HHHHhhcCCCCCcchHHHHHHH---HHHHHHH
Q 015504 214 MTTVGKTWAADEFLSASESRRHNITGDIFGLLSAITYGLFT-------VLLKKSAGSEGDKVDVQKFFGY---IGLFTFL 283 (405)
Q Consensus 214 ll~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~-------v~~k~~~~~~~~~~~~~~~~~~---~~~~~~~ 283 (405)
+.+..+...+.+...++....+...|.+++++|.+.|+.|. ...+.......+.......... .|.+..-
T Consensus 150 l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n 229 (345)
T PRK13499 150 IVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITN 229 (345)
T ss_pred HHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 99884332211110000123457899999999999999999 4443321111111111111111 1211111
Q ss_pred HHHHHHHHHhhcCCC--CCccCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH----HHhhchHHHHHH
Q 015504 284 GLWWLIWPLNAAGIE--PPFRFPHS----QSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVAT----LGMSLTMPLAMV 353 (405)
Q Consensus 284 ~~~~~~~~~~~~~~e--~~~~~~~~----~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~s----v~~~l~~~~a~i 353 (405)
+.++. .....+-+ ...+.... ......-+..|++ ..+++.++..+....+...+. +.+.+...++.+
T Consensus 230 ~~~~~--~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~-W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Viistl 306 (345)
T PRK13499 230 LGFCF--IRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVM-WYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNL 306 (345)
T ss_pred HHHHH--HHHhhCCCcccchhccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHH
Confidence 11111 00001101 00111111 1122222444544 777888888887776543332 333555667999
Q ss_pred HHHHHcCCCcc------HHHHHHHHHHHHHHHHhhcCc
Q 015504 354 ADMVIHGRHYS------AIYIFGCLQVFAGFIIANLSD 385 (405)
Q Consensus 354 ~~~i~~ge~~~------~~~iiG~~lI~~g~~l~~~~~ 385 (405)
.+.+ +||.=+ ...++|.+++++|..+..+..
T Consensus 307 wGi~-lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~~ 343 (345)
T PRK13499 307 WGLV-LKEWKGASRRPVRVLSLGCVVIILAANIVGLGN 343 (345)
T ss_pred hhhh-hhhccCCCccchhHHHHHHHHHHHHHHHHhhcc
Confidence 9994 888755 677999999999999887653
No 36
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.91 E-value=8.6e-09 Score=82.93 Aligned_cols=136 Identities=12% Similarity=0.088 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeeheecchhhHHHHHHHHHHHHHHhhhhhhhcccccCCCcccCCCCCCCC
Q 015504 8 GLGLIGAFVLIWITSAEITQKIFTEYRQPFALTYLGVSLMVIYLPVALLRDCFCSLLDKNIFKNLFGNRSLTSTSTGLDI 87 (405)
Q Consensus 8 g~~~~l~~~i~w~~~~~l~q~i~~~~~~P~~~t~~~~~~~~l~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
-.+.-++++..|+.....+|.-.+ ...|-+-|.+|+....+++...... ..+.. .
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~-------~g~~~-~---------------- 58 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLV-------TGNWQ-A---------------- 58 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHh-------cCcee-c----------------
Confidence 356778899999888888876555 4678888999988877776432221 11100 0
Q ss_pred cccccccccchhhhhhcccccCcCcCccccCCcccccCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015504 88 PLKSNELNNSLETDLRSSLMMDKDLSEREEGWPLIAKSDKDEPHVLEQRSELSSWAIAKCSLYLTPIWFITEYFSNSALA 167 (405)
Q Consensus 88 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 167 (405)
.. ..+.|.+. ...+.|+.-.+++++||.|++
T Consensus 59 ---------------------~~---------------------------~~~~k~~l-flilSGla~glswl~Yf~ALk 89 (140)
T COG2510 59 ---------------------GG---------------------------EIGPKSWL-FLILSGLAGGLSWLLYFRALK 89 (140)
T ss_pred ---------------------cc---------------------------ccCcceeh-hhhHHHHHHHHHHHHHHHHHh
Confidence 00 01111122 223334455567889999999
Q ss_pred ccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEe
Q 015504 168 NTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTV 217 (405)
Q Consensus 168 ~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~ 217 (405)
.-.++.+.-+..++|+++.++++++++||++..+++|+++..+|+++++.
T Consensus 90 ~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 90 KGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred cCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 99999999999999999999999999999999999999999999999874
No 37
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.90 E-value=3.1e-08 Score=89.64 Aligned_cols=241 Identities=13% Similarity=0.164 Sum_probs=160.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEec
Q 015504 139 LSSWAIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVG 218 (405)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~ 218 (405)
.++|...+++++.. .+.-+-+-++.|.+-.+..+.-++-.+-+++-+.++-++|-.+....+..+..+|+++....
T Consensus 104 iP~rtY~~la~~t~----gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLA 179 (367)
T KOG1582|consen 104 IPWRTYVILAFLTV----GTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLA 179 (367)
T ss_pred cchhHhhhhHhhhh----hccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhc
Confidence 34555555554432 22233357888888888888888888888899999999999999999999999999999987
Q ss_pred CCCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015504 219 KTWAADEFLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIE 298 (405)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 298 (405)
|... .++-+..|+.+.-.+-++-|+-..+.+|..+.++.. ++-+.+ +.-.++++.+.. ++..+| |
T Consensus 180 Ds~~---------sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~s-s~Emvf-ySy~iG~vflf~---~mvlTg-e 244 (367)
T KOG1582|consen 180 DSQT---------SPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPAS-SSEMVF-YSYGIGFVFLFA---PMVLTG-E 244 (367)
T ss_pred cccc---------CCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCC-cceEEE-eeecccHHHHHH---HHHhcc-c
Confidence 7632 234467899998888888998888888877644322 111111 111111111110 111121 1
Q ss_pred C--C--ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 015504 299 P--P--FRFPHSQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQV 374 (405)
Q Consensus 299 ~--~--~~~~~~~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI 374 (405)
- . +-..+....+...++.+. .+.++.......++.-++..++......--++++++++++..++|.+..-|..+|
T Consensus 245 ~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv 323 (367)
T KOG1582|consen 245 LFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLV 323 (367)
T ss_pred chhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHH
Confidence 0 0 111222223444443333 2455555666677888888888888888999999999999999999999999999
Q ss_pred HHHHHHhhcCchhhhhHHHHhhhhh
Q 015504 375 FAGFIIANLSDKFSAKIELLQMKLL 399 (405)
Q Consensus 375 ~~g~~l~~~~~~~~~~~~~~~~~~~ 399 (405)
+.|+++-.++++.+........|..
T Consensus 324 ~lgI~Ln~ysk~nk~~~~~~~~r~~ 348 (367)
T KOG1582|consen 324 VLGIYLNMYSKRNKIPLASLIRRIV 348 (367)
T ss_pred HHHHHhhcccCCCCCchhhHHhhhh
Confidence 9999998887754444444444433
No 38
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.86 E-value=1.7e-09 Score=89.02 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEE
Q 015504 145 AKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTT 216 (405)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~ 216 (405)
......+++...+++.+++.|+++++++.++.+.++.|+++.++++++++|++++.+++|+++++.|++++.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 54 LWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 333444444456788899999999999999999999999999999999999999999999999999988753
No 39
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.83 E-value=8.1e-09 Score=93.68 Aligned_cols=240 Identities=15% Similarity=0.132 Sum_probs=148.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEE
Q 015504 137 SELSSWAIAKCSLYLTPIWFITEYFSNSALAN-TSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMT 215 (405)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll 215 (405)
++.+.|+..+... ++|..|.+-++++++ .+...-.++.+.+++-+++++++++|+|-+.+|..++++..+|+++.
T Consensus 60 ~kiplk~Y~i~V~----mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIc 135 (330)
T KOG1583|consen 60 PKIPLKDYAITVA----MFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIIC 135 (330)
T ss_pred CCCchhhhheehh----eeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeE
Confidence 4666776555443 345566677888887 47777778889999999999999999999999999999999999998
Q ss_pred EecCCCcccc---cc---ccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHH---HH
Q 015504 216 TVGKTWAADE---FL---SASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLG---LW 286 (405)
Q Consensus 216 ~~~~~~~~~~---~~---~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 286 (405)
.+.+..+..+ +. +...+.....+|+.+...+.+.-|.-.+..+...+++..-. .-.+.+.=++.+.. +.
T Consensus 136 Tl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~--~EalFytH~LsLP~Flf~~ 213 (330)
T KOG1583|consen 136 TLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHW--KEALFYTHFLSLPLFLFMG 213 (330)
T ss_pred EeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh--HHHHHHHHHhccchHHHhc
Confidence 8654322111 10 01112223567877776666666655544444333321111 11111111211111 00
Q ss_pred -HHHHHHh-hcCCCCCccCCC----chhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcC
Q 015504 287 -WLIWPLN-AAGIEPPFRFPH----SQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHG 360 (405)
Q Consensus 287 -~~~~~~~-~~~~e~~~~~~~----~~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~g 360 (405)
++..-+. ....|+ ...|. -+..|..++.+.+. ...|.-..+..-..+++.++++...+.--++.+++.+.+.
T Consensus 214 ~div~~~~~~~~se~-~~~p~~g~~vP~~~~yLl~n~L~-Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~ 291 (330)
T KOG1583|consen 214 DDIVSHWRLAFKSES-YLIPLLGFKVPSMWVYLLFNVLT-QYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFE 291 (330)
T ss_pred chHHHHHHHHhcCcc-eeccccCccccHHHHHHHHHHHH-HHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEec
Confidence 0000000 111221 22222 23456666555442 3333333444445677888888888888899999999999
Q ss_pred CCccHHHHHHHHHHHHHHHHhhcC
Q 015504 361 RHYSAIYIFGCLQVFAGFIIANLS 384 (405)
Q Consensus 361 e~~~~~~iiG~~lI~~g~~l~~~~ 384 (405)
.++++..++|+++++.|-++..-.
T Consensus 292 Npft~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 292 NPFTPWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887653
No 40
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.77 E-value=1.3e-08 Score=83.03 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCC
Q 015504 156 FITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKT 220 (405)
Q Consensus 156 ~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~ 220 (405)
..++.++++|+++.+ +.++.+.+++|+++.+++++++|||++++++++++++++|++++..++.
T Consensus 46 ~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 46 GVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 367889999999999 5888999999999999999999999999999999999999999998765
No 41
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.68 E-value=7.5e-07 Score=84.57 Aligned_cols=134 Identities=15% Similarity=0.002 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHHHHHHHHH
Q 015504 240 DIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLLLNGFV 319 (405)
Q Consensus 240 ~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~il~~g~~ 319 (405)
.++.++++++||...++.|+..++++ . ....+. ....+++.|.... ... + ..++.....++..+..+.+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~--~~~~~~---~~~~~~l~~~~~~-~~~--~--~~~~~~~~~~~~~~~~~~~ 71 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP-D--FLWWAL---LAHSVLLTPYGLW-YLA--Q--VGWSRLPATFWLLLAISAV 71 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh-H--HHHHHH---HHHHHHHHHHHHH-hcc--c--CCCCCcchhhHHHHHHHHH
Confidence 46889999999999999998877422 1 222222 2222233332211 100 1 1122112223333444445
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcC
Q 015504 320 GSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLS 384 (405)
Q Consensus 320 ~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~ 384 (405)
+....+.+++.+.++.++..+++..+..|+++++++++++||+++..+++|.++++.|+++...+
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 67888999999999999999999999998899999999999999999999999999999987754
No 42
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.64 E-value=1.3e-06 Score=79.94 Aligned_cols=193 Identities=13% Similarity=0.100 Sum_probs=110.4
Q ss_pred hhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceE--------------------EEEecCCCcccccccccc
Q 015504 172 ASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVA--------------------MTTVGKTWAADEFLSASE 231 (405)
Q Consensus 172 ~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~--------------------ll~~~~~~~~~~~~~~~~ 231 (405)
.......+..++++++.++.+.++|.+..|+++.++...|++ ....++..+ ...
T Consensus 5 Pa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~------~~~ 78 (222)
T TIGR00803 5 PIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSA------KTL 78 (222)
T ss_pred cchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCc------ccc
Confidence 334444555555555555555555555555555555555554 333222110 001
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--Ccc--CCCch
Q 015504 232 SRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEP--PFR--FPHSQ 307 (405)
Q Consensus 232 ~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--~~~--~~~~~ 307 (405)
..++...|....+.+..+-++-.++.++..++.+..... ..+.. .+++.+.... .....+.+. .+. .....
T Consensus 79 ~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~-~~~~l-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 153 (222)
T TIGR00803 79 MFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWS-RNLQL-PLFGLFSTFS---VLLWSDGTLISNFGFFIGYPT 153 (222)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHH-HHHHH-HHHHHHHHHH---HHhhcccchhhccCcccCCch
Confidence 123466787778888888788888888876643221111 11111 1111111100 111111110 001 11122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHH
Q 015504 308 SVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFII 380 (405)
Q Consensus 308 ~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l 380 (405)
..|..+ +...++..+....+|+.++...++...+++.++.+++++++|++++..+++|+.+++.|+++
T Consensus 154 ~~~~~~-----~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 154 AVWIVG-----LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHH-----HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 223222 22455566788999999999999999999999999999999999999999999999998765
No 43
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.63 E-value=4.1e-07 Score=85.10 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceE
Q 015504 147 CSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVA 213 (405)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ 213 (405)
....+.+...+++.+|+.++++++++.++.+.++.|++++++++++++|+++..+++|+++.+.|+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 194 LLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 3334444456688899999999999999999999999999999999999999999999999999863
No 44
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.62 E-value=1.7e-06 Score=71.85 Aligned_cols=122 Identities=20% Similarity=0.179 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHHHHHHH
Q 015504 238 TGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLLLNG 317 (405)
Q Consensus 238 ~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~il~~g 317 (405)
.|.++.+++.++-+...++.|+-.++..+ .+.... .. ..+ ... . ++ ...++.|
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~----~~-~~~--------~~~--~--------~p---~~~i~lg 54 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD----FI-AAL--------LAF--G--------LA---LRAVLLG 54 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH----HH-HHH--------HHH--h--------cc---HHHHHHH
Confidence 47888999999999999999987764322 111110 00 000 000 0 01 1246677
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHH--HcCCCccHHHHHHHHHHHHHHHHhhcCch
Q 015504 318 FVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMV--IHGRHYSAIYIFGCLQVFAGFIIANLSDK 386 (405)
Q Consensus 318 ~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i--~~ge~~~~~~iiG~~lI~~g~~l~~~~~~ 386 (405)
+++.++++.+|..++++.+...+....++.+.+..+.++. ++||++++.+++|.++|++|+++.+++++
T Consensus 55 l~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 55 LAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 8889999999999999999999998888876667777774 89999999999999999999999987654
No 45
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.60 E-value=1.9e-06 Score=82.22 Aligned_cols=233 Identities=14% Similarity=0.152 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCc
Q 015504 143 AIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWA 222 (405)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~ 222 (405)
..++.++. ++.+++.+.+.|+.+.|++..+-+.+...++.++++..++|||+++..+.|+++++.|..++...+..+
T Consensus 51 ~~W~~G~~---~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~ 127 (300)
T PF05653_consen 51 PLWWIGLL---LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKE 127 (300)
T ss_pred HHHHHHHH---HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCC
Confidence 44555544 345577778999999999999999999999999999999999999999999999999999887544322
Q ss_pred cccc-cccc-c-ccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHH--HHHHHHHhhcCC
Q 015504 223 ADEF-LSAS-E-SRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGL--WWLIWPLNAAGI 297 (405)
Q Consensus 223 ~~~~-~~~~-~-~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 297 (405)
.+.. .+.- . ..+...+....... .+...+.....+|..+++ ..... ..-+..|.++.+.. .-...-....|
T Consensus 128 ~~~~t~~~l~~~~~~~~fl~y~~~~~-~~~~~L~~~~~~r~g~~~-i~vyi-~i~sl~Gs~tvl~~K~i~~~i~~~~~g- 203 (300)
T PF05653_consen 128 EPIHTLDELIALLSQPGFLVYFILVL-VLILILIFFIKPRYGRRN-ILVYI-SICSLIGSFTVLSAKAISILIKLTFSG- 203 (300)
T ss_pred CCcCCHHHHHHHhcCcceehhHHHHH-HHHHHHHHhhcchhcccc-eEEEE-EEeccccchhhhHHHHHHHHHHHHhcC-
Confidence 1110 0000 0 00001111111111 122222222222322211 11000 00001111111100 00000111112
Q ss_pred CCCccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHH-HHHHHHHHHcCCC--ccH----HHHHH
Q 015504 298 EPPFRFPHSQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMP-LAMVADMVIHGRH--YSA----IYIFG 370 (405)
Q Consensus 298 e~~~~~~~~~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~-~a~i~~~i~~ge~--~~~----~~iiG 370 (405)
+ ..+. .+..|..++.. +.+........++++++-+++.+....+..-- .+.+.+.++++|. ++. ....|
T Consensus 204 ~--~~f~-~~~~y~l~~~~-v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G 279 (300)
T PF05653_consen 204 D--NQFT-YPLTYLLLLVL-VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCG 279 (300)
T ss_pred c--hhhh-hhHHHHHHHHH-HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 1 1222 23345443333 44566777888899999998877655554433 4888888899874 444 55678
Q ss_pred HHHHHHHHHHhhcCch
Q 015504 371 CLQVFAGFIIANLSDK 386 (405)
Q Consensus 371 ~~lI~~g~~l~~~~~~ 386 (405)
+.+++.|+++....+.
T Consensus 280 ~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 280 FLIIIIGVFLLSSSKD 295 (300)
T ss_pred HHHHHHhhheeeccCc
Confidence 8899999999876543
No 46
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.55 E-value=3.3e-07 Score=80.84 Aligned_cols=230 Identities=15% Similarity=0.131 Sum_probs=157.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecC
Q 015504 140 SSWAIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGK 219 (405)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~ 219 (405)
..++++..+++.....+- -..+++|.++...++.-++..+.++....++++.|++-....+-++.+..-+.-.++|
T Consensus 67 ~aK~WfpiSfLLv~MIyt----~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D 142 (309)
T COG5070 67 KAKKWFPISFLLVVMIYT----SSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGD 142 (309)
T ss_pred hhhhhcCHHHHHHHHHHh----cccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccch
Confidence 345566666655444332 2589999999999999999999999999999999999999999888887777766665
Q ss_pred CCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 015504 220 TWAADEFLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEP 299 (405)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 299 (405)
.++... .......|.+|+...++.-+.|....|+..+-. ..-+ .-.+.+--++++.++...- +.+-+|.+
T Consensus 143 ~q~~~~------~~~~lN~GY~Wm~~NclssaafVL~mrkri~lt-Nf~d-~dtmfYnNllslPiL~~~s--~~~edws~ 212 (309)
T COG5070 143 QQASAF------KAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLT-NFKD-FDTMFYNNLLSLPILLSFS--FLFEDWSP 212 (309)
T ss_pred hhHHHH------HhcccCCceEEEehhhHhHHHHHHHHHHhhccc-ccch-hhHHHHhhhHHHHHHHHHH--HHhccCCc
Confidence 432111 112456799999999999999999998876521 1111 1123333444444332111 11222222
Q ss_pred C---ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 015504 300 P---FRFPHSQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFA 376 (405)
Q Consensus 300 ~---~~~~~~~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~ 376 (405)
. ..++. ....++...|+. ++.-.++-.|.++-++++.-|+...+.-.-.++.|.+++||+.+...+....+=.+
T Consensus 213 ~n~annl~~--d~l~am~ISgl~-svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGfl 289 (309)
T COG5070 213 GNLANNLSV--DSLMAMFISGLC-SVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFL 289 (309)
T ss_pred chhhcCCCh--HHHHHHHHHHHH-HhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHH
Confidence 0 01222 233445556664 44444667788999999999999998877778899999999999999998888777
Q ss_pred HHHHhhcCch
Q 015504 377 GFIIANLSDK 386 (405)
Q Consensus 377 g~~l~~~~~~ 386 (405)
+-+++.....
T Consensus 290 sg~iYavaks 299 (309)
T COG5070 290 SGAIYAVAKS 299 (309)
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 47
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.50 E-value=2.5e-08 Score=89.17 Aligned_cols=223 Identities=13% Similarity=0.128 Sum_probs=158.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhh-hhHHHHHHHHHHhccccchHHH----HHHHHHhhhceE
Q 015504 139 LSSWAIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTS-TSGLFTLFFGALLGQDSITIAK----LVAVFISMAGVA 213 (405)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~-~~pv~~~ils~l~~~er~~~~~----~~~i~l~~~Gv~ 213 (405)
....+.+..+++.+.+|.++|..++.|.++.+++.+.-+++ .+-+-+-+++++.++|..+..+ .+++++.++|++
T Consensus 53 ~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~ 132 (288)
T COG4975 53 ELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIY 132 (288)
T ss_pred ccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhhe
Confidence 34567788899999999999999999999999999999965 5777889999999999887654 458889999999
Q ss_pred EEEecCCCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 015504 214 MTTVGKTWAADEFLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLN 293 (405)
Q Consensus 214 ll~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (405)
+-++.|..+.+++ +.++...|....+.+.+.|-.|.++.+...-+ ..+.........+++.+ .+.
T Consensus 133 lTs~~~~~nk~~~-----~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~---g~saiLPqAiGMv~~al-------i~~ 197 (288)
T COG4975 133 LTSKQDRNNKEEE-----NPSNLKKGIVILLISTLGYVGYVVLFQLFDVD---GLSAILPQAIGMVIGAL-------ILG 197 (288)
T ss_pred Eeeeecccccccc-----ChHhhhhheeeeeeeccceeeeEeeecccccc---chhhhhHHHHHHHHHHH-------HHh
Confidence 9998775433322 34556789999999999999999998876531 22222222221122222 123
Q ss_pred hcCCCCCccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHH----HH
Q 015504 294 AAGIEPPFRFPHSQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIY----IF 369 (405)
Q Consensus 294 ~~~~e~~~~~~~~~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~----ii 369 (405)
..+.| .+.+...|. -+.-|++ +.+++..+..+.++.+-.+.=..+-+..+++.+.+.++++|+=|..+ ++
T Consensus 198 ~~~~~----~~~~K~t~~-nii~G~~-Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~i 271 (288)
T COG4975 198 FFKME----KRFNKYTWL-NIIPGLI-WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVII 271 (288)
T ss_pred hcccc----cchHHHHHH-HHhhHHH-HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhh
Confidence 33333 233344443 4555665 78888888888887775444334455577899999999999877754 56
Q ss_pred HHHHHHHHHHHhh
Q 015504 370 GCLQVFAGFIIAN 382 (405)
Q Consensus 370 G~~lI~~g~~l~~ 382 (405)
|.++++.|..+..
T Consensus 272 Giilivvgai~lg 284 (288)
T COG4975 272 GIILIVVGAILLG 284 (288)
T ss_pred hHHHHHHHhhhhh
Confidence 8888888876654
No 48
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.46 E-value=1.6e-06 Score=84.97 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCC
Q 015504 156 FITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKT 220 (405)
Q Consensus 156 ~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~ 220 (405)
.++.++|++++++.+++.+++..++.|+++.++++++++|+++..+++|.++.+.|++++..+..
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~ 331 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKA 331 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 35777899999999999999999999999999999999999999999999999999999876543
No 49
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.43 E-value=6.8e-06 Score=78.63 Aligned_cols=140 Identities=12% Similarity=0.106 Sum_probs=94.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc-CCCchhHHHHH
Q 015504 235 HNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFR-FPHSQSVGEVL 313 (405)
Q Consensus 235 ~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~~~~i 313 (405)
+...|++++++++++|+...+..|.. .+ -+... ...+-.+++.+++.+.... ..+... .. ...+...+. .
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~-~~~~~---~~~~R~~~a~~~l~~~~~~--~~~~~~-~~~~~~~~~~~~-~ 75 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YY-VPADE---ILTHRVIWSFFFMVVLMSI--CRQWSY-LKTLIQTPQKIF-M 75 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cC-CCHHH---HHHHHHHHHHHHHHHHHHH--HccHHH-HHHHHcCHHHHH-H
Confidence 35689999999999999999999764 32 22222 2222222222222221111 000000 00 001122222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhc
Q 015504 314 LLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANL 383 (405)
Q Consensus 314 l~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~ 383 (405)
...+.++..+.+.+++++++++++..+++..++.|++.+++++++++|+++..+++|.++.+.|+++...
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 76 LAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3345556778899999999999999999999999889999999999999999999999999999988753
No 50
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.37 E-value=1.2e-06 Score=70.98 Aligned_cols=69 Identities=10% Similarity=0.027 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEE
Q 015504 148 SLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTT 216 (405)
Q Consensus 148 ~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~ 216 (405)
...+..++.++.+++..+++..|.+.+-.+.++.++++.+++++++|||++..+++|+.+.++|++++.
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 333345677788899999999999999999999999999999999999999999999999999998875
No 51
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.34 E-value=6.6e-06 Score=78.61 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEec
Q 015504 154 IWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVG 218 (405)
Q Consensus 154 ~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~ 218 (405)
.-.++..+|+.++++.+++.++.+.++.|+++.++++++++|+++..+++|.++.++|++.....
T Consensus 218 ~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 218 STALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 34557778999999999999999999999999999999999999999999999999999887543
No 52
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.28 E-value=3.9e-05 Score=71.71 Aligned_cols=138 Identities=14% Similarity=0.125 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCccCCCchhHHHHHH
Q 015504 238 TGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIE---PPFRFPHSQSVGEVLL 314 (405)
Q Consensus 238 ~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---~~~~~~~~~~~~~~il 314 (405)
.|..++++++++|+...+..|.. .+ -+..+....- .+++.+++.+.... ..... +....+.....+..+.
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~-~~~~~i~~~R---~~~a~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 74 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KP-LPATDILGHR---MIWSFPFMLLSVTL--FRQWAALIERLKRIQKRPLILSLL 74 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-cc-CCHHHHHHHH---HHHHHHHHHHHHHH--HcchHHHHHHHhCcccchHHHHHH
Confidence 48899999999999999999973 32 2222222222 22222222211111 11000 0011111112233344
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhc
Q 015504 315 LNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANL 383 (405)
Q Consensus 315 ~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~ 383 (405)
..|++ ..++..+++.+++++++..+++..++.|.+++++++++++|+++..+++|.++.++|+.+...
T Consensus 75 ~~g~~-~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 75 LCGLL-IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHH-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 55554 678899999999999999999999998889999999999999999999999999999887654
No 53
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.26 E-value=1.1e-05 Score=77.05 Aligned_cols=66 Identities=11% Similarity=0.034 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEec
Q 015504 153 PIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVG 218 (405)
Q Consensus 153 ~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~ 218 (405)
+.-.+++++|+.++++.+++.++.+.+..|++..++++++++|+++..+++|.++.+.|+++....
T Consensus 223 ~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 223 AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 345668999999999999999999999999999999999999999999999999999999887543
No 54
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.22 E-value=1.9e-05 Score=75.67 Aligned_cols=77 Identities=16% Similarity=0.089 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecC
Q 015504 143 AIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGK 219 (405)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~ 219 (405)
.+......+.+.-.++.++|+.++++.++++++.+..+.|++..++++++++|+++..+++|.++.++|+++...+.
T Consensus 213 ~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 213 TILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 33333344444455678889999999999999999999999999999999999999999999999999998876543
No 55
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.18 E-value=9.4e-06 Score=77.50 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEec
Q 015504 148 SLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVG 218 (405)
Q Consensus 148 ~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~ 218 (405)
...+.+.-.++..+|+.++++.+++.++.+..+.|++++++++++++|+++..+++|.++.+.|++++...
T Consensus 216 ~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 216 GYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 33333334567889999999999999999999999999999999999999999999999999999887543
No 56
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.15 E-value=2e-05 Score=64.04 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCch
Q 015504 310 GEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDK 386 (405)
Q Consensus 310 ~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~ 386 (405)
+...+..|+++...++.++..+.++.++ .+++...+.|++++++++++++|+++..+++|.+++++|+++..+++.
T Consensus 34 ~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 34 WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 3345555666666899999999999995 777888898999999999999999999999999999999999988754
No 57
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.08 E-value=4.3e-05 Score=61.85 Aligned_cols=68 Identities=16% Similarity=0.124 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhc
Q 015504 316 NGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANL 383 (405)
Q Consensus 316 ~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~ 383 (405)
.++++.++++.++..++++.+...+....++.+..+++.+++++||+++..+++|.+++++|+++...
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34466788999999999999999998888888888999999999999999999999999999988653
No 58
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.97 E-value=0.00018 Score=61.40 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEE
Q 015504 143 AIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMT 215 (405)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll 215 (405)
+.....+..+++.++.|+..+..++++++.+.+++...-.+.+.++++++++|+++..++.|++++++|+++-
T Consensus 79 ~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 79 NFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 4555566667788889999999999999999999999999999999999999999999999999999998764
No 59
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=8.7e-05 Score=69.50 Aligned_cols=228 Identities=9% Similarity=0.100 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCCc
Q 015504 143 AIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWA 222 (405)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~~ 222 (405)
.+++.+++ .+.++...-|.|..+.|++..+-+.+++.++.++++..+++||++..-.+|.+++++|-.++..+...+
T Consensus 65 ~~Ww~G~l---tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e 141 (335)
T KOG2922|consen 65 PLWWAGML---TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKE 141 (335)
T ss_pred HHHHHHHH---HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcc
Confidence 45555554 345566777899999999999999999999999999999999999999999999999999998765432
Q ss_pred cccccccc--cc-cccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHH---HHH--HHHHHHHHhh
Q 015504 223 ADEFLSAS--ES-RRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFT---FLG--LWWLIWPLNA 294 (405)
Q Consensus 223 ~~~~~~~~--~~-~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~ 294 (405)
.+-....+ .. .+...+.....++..+ .+-...+| +++. ...+......+++++ .+- ..-..+-..+
T Consensus 142 ~~i~t~~el~~~~~~~~Fliy~~~iil~~--~il~~~~~---p~~g-~tnilvyi~i~s~iGS~tV~svKalg~aiklt~ 215 (335)
T KOG2922|consen 142 QEIESVEEVWELATEPGFLVYVIIIILIV--LILIFFYA---PRYG-QTNILVYIGICSLIGSLTVMSVKALGIAIKLTF 215 (335)
T ss_pred cccccHHHHHHHhcCccHHHHHHHHHHHH--HHHheeec---cccc-ccceeehhhHhhhhcceeeeeHHHHHHHHHHHh
Confidence 21100000 00 0001111111111111 11111112 1111 111111112222211 100 0001111222
Q ss_pred cCCCCCccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhch-HHHHHHHHHHHcCCC--ccH----HH
Q 015504 295 AGIEPPFRFPHSQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLT-MPLAMVADMVIHGRH--YSA----IY 367 (405)
Q Consensus 295 ~~~e~~~~~~~~~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~-~~~a~i~~~i~~ge~--~~~----~~ 367 (405)
.|. .++.. +..|..++.. +.+...-..-.++|.+.-++..++...+.. .-++++.+.+++.|- .+. ..
T Consensus 216 ~g~---~ql~~-~~ty~~~l~~-~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~ 290 (335)
T KOG2922|consen 216 SGN---NQLFY-PLTWIFLLVV-ATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGE 290 (335)
T ss_pred cCC---ccccc-HHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 221 22221 2334433333 234455566678899988877776655543 345778888888763 333 56
Q ss_pred HHHHHHHHHHHHHhhcC
Q 015504 368 IFGCLQVFAGFIIANLS 384 (405)
Q Consensus 368 iiG~~lI~~g~~l~~~~ 384 (405)
+.|+..++.|+.++...
T Consensus 291 ~~Gf~ti~~G~flL~~~ 307 (335)
T KOG2922|consen 291 LCGFVTIFLGIFLLHRT 307 (335)
T ss_pred HHhHHHhhheeeEeeee
Confidence 78899999999998553
No 60
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.83 E-value=6.3e-05 Score=62.49 Aligned_cols=72 Identities=17% Similarity=0.086 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHH--hccccchHHHHHHHHHhhhceEEEEecC
Q 015504 148 SLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGAL--LGQDSITIAKLVAVFISMAGVAMTTVGK 219 (405)
Q Consensus 148 ~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l--~~~er~~~~~~~~i~l~~~Gv~ll~~~~ 219 (405)
...+..++.++.+++..+++..+++.+..+.+..++++.+.++. +++|+++..+++|+++.++|++++..++
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 34445577889999999999999999999999999999888885 7999999999999999999999987543
No 61
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.79 E-value=0.00013 Score=59.52 Aligned_cols=71 Identities=18% Similarity=0.194 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHhhchHHH-HHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCchhh
Q 015504 318 FVGSVLSDYFWALSVVWTTPLVA-TLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDKFS 388 (405)
Q Consensus 318 ~~~t~l~~~l~~~~~~~~~~~~~-sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~~~ 388 (405)
+++.+++++++..++|..+-..+ ++...+.....++.+++++||++++.+++|..+|++|++..+..++.+
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~~ 108 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRKA 108 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 44567899999999999886665 555567777889999999999999999999999999999998766433
No 62
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.79 E-value=0.00098 Score=63.88 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhc
Q 015504 307 QSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANL 383 (405)
Q Consensus 307 ~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~ 383 (405)
...|..++..|++ ..+.+.+.+.+++++++..+++..+++|++.+++++++++|+++..+++|.+++++|+.+...
T Consensus 62 ~~~~~~~~~~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~ 137 (302)
T TIGR00817 62 SALLKLLLPVAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASD 137 (302)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcC
Confidence 4467777778877 477789999999999999999999999999999999999999999999999999999987654
No 63
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.72 E-value=0.0016 Score=63.84 Aligned_cols=76 Identities=7% Similarity=0.060 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcC
Q 015504 308 SVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLS 384 (405)
Q Consensus 308 ~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~ 384 (405)
..|..++..|++... .+...+.+++++++..+.+..+++|++.+++++++++|+++..+++|.+++++|+.+....
T Consensus 112 ~~~~~llp~gl~~~~-~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~ 187 (350)
T PTZ00343 112 LFLKNFLPQGLCHLF-VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVK 187 (350)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecc
Confidence 356667777876543 4666779999999999999999999999999999999999999999999999999998754
No 64
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.71 E-value=0.00085 Score=64.80 Aligned_cols=145 Identities=18% Similarity=0.222 Sum_probs=93.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHHHHH
Q 015504 236 NITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLLL 315 (405)
Q Consensus 236 ~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~il~ 315 (405)
.+.+.+++-+.+++-+.-.+....+.++....-..+.++.+.. +.++. .|.. ..-.+.++.... ....|+.-+.
T Consensus 11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~-l~~vy-~~~~--~~r~~~~~~~~~--~~~~~w~y~l 84 (334)
T PF06027_consen 11 FWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVL-LALVY-TPIL--LYRRGFKKWLKV--LKRPWWKYFL 84 (334)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHH-HHHHH-hhhh--hhccccccchhh--cchhHHHHHH
Confidence 4555566666666666665555555543211112233444422 22221 1111 111121211111 1223444455
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCchh
Q 015504 316 NGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDKF 387 (405)
Q Consensus 316 ~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~~ 387 (405)
.+++ -+.++++.+.|.++|+-+.+.+.....+|++++++++++++++++.+++|+++.++|+.++...+..
T Consensus 85 la~~-Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 85 LALL-DVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred HHHH-HHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 5665 6899999999999999999999999999999999999999999999999999999999998887643
No 65
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.67 E-value=0.001 Score=63.48 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHHHHHHHH
Q 015504 239 GDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLLLNGF 318 (405)
Q Consensus 239 G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~il~~g~ 318 (405)
|.+++++++++|+...+..|+..+ .+..+..+. .++..+... ...... .+.. .....+..-+..|+
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~g-----~~~~~~~~~--~~g~l~~~~---~~~~~~-~~~~---~~~~~~~~g~l~G~ 67 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIGG-----GPYSQTLGT--TFGALILSI---AIAIFV-LPEF---WALSIFLVGLLSGA 67 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccCC-----CHHHHHHHH--HHHHHHHHH---HHHHHh-CCcc---cccHHHHHHHHHHH
Confidence 678999999999999999998752 222333321 111111100 011111 1111 11333443444444
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHhh-chHHHHHHHHHHHcCCCccHHH----HHHHHHHHHHHHHhhcCc
Q 015504 319 VGSVLSDYFWALSVVWTTPLVATLGMS-LTMPLAMVADMVIHGRHYSAIY----IFGCLQVFAGFIIANLSD 385 (405)
Q Consensus 319 ~~t~l~~~l~~~~~~~~~~~~~sv~~~-l~~~~a~i~~~i~~ge~~~~~~----iiG~~lI~~g~~l~~~~~ 385 (405)
+ ..+++.+++.++++++...+....+ +.+.++.+++.+++||+.+..+ ++|.++++.|+++....+
T Consensus 68 ~-w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 68 F-WALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred H-HHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 3 7889999999999999988877666 6555799999999999999999 999999999999986653
No 66
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.65 E-value=0.0029 Score=59.52 Aligned_cols=143 Identities=23% Similarity=0.176 Sum_probs=96.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHHHHH
Q 015504 236 NITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLLL 315 (405)
Q Consensus 236 ~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~il~ 315 (405)
...+....++.++.|+......|..... . .........-........ .+....+.. ...+... .+.....
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~-~~~~~~~ 74 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVES-L--DPFLFAAALRFLIAALLL----LPLLLLEPR--GLRPALR-PWLLLLL 74 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-c--CChHHHHHHHHHHHHHHH----HHHHHhhcc--ccccccc-chHHHHH
Confidence 4578888889999999999999988763 1 111111111111111111 011111110 0111111 1333455
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHH-HHcCCCccHHHHHHHHHHHHHHHHhhcCchhh
Q 015504 316 NGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADM-VIHGRHYSAIYIFGCLQVFAGFIIANLSDKFS 388 (405)
Q Consensus 316 ~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~-i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~~~ 388 (405)
.+.+.....+.+++.+++++++..+++..+..|.+..++++ ++++|+++..++.|..+.+.|+++...++...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 55666888999999999999999999999999999999996 77799999999999999999999999876643
No 67
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.63 E-value=0.00098 Score=61.89 Aligned_cols=141 Identities=15% Similarity=0.163 Sum_probs=97.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHHHHH
Q 015504 236 NITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLLL 315 (405)
Q Consensus 236 ~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~il~ 315 (405)
...|+++++.+-+.|+.--.+.|-..+- +..++ +..=-++++.++.....+. .++....+.-.+++.+.....
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~~~--~~~eI---lahRviwS~~~~l~ll~~~--r~~~~~~~~~~~p~~~~~~~l 77 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLEPL--PATEI---LAHRVIWSFPFMLALLFLL--RQWRELKQLLKQPKTLLMLAL 77 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHccC--CHHHH---HHHHHHHHHHHHHHHHHHH--hhhHHHHHHHhCcHHHHHHHH
Confidence 4579999999999999988888876552 22221 1111122222211111111 111111223334555666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcC
Q 015504 316 NGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLS 384 (405)
Q Consensus 316 ~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~ 384 (405)
.++. -......+.++...-....+|++-++.|.+.+++|.++++|+++..|+++.++..+|+....+.
T Consensus 78 ~a~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 78 TALL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 6654 4677889999999999999999999999999999999999999999999999999999886654
No 68
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.60 E-value=0.00048 Score=55.49 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHhhchHHH-HHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCc
Q 015504 318 FVGSVLSDYFWALSVVWTTPLVA-TLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSD 385 (405)
Q Consensus 318 ~~~t~l~~~l~~~~~~~~~~~~~-sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~ 385 (405)
+++.+++++++..++++.+-..+ ++..-+.....++.+++++||++++.+++|..+|+.|++..+..+
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44567889999999999886655 555667788889999999999999999999999999999998754
No 69
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.56 E-value=0.00072 Score=53.48 Aligned_cols=66 Identities=23% Similarity=0.273 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHhhchHHH-HHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCc
Q 015504 320 GSVLSDYFWALSVVWTTPLVA-TLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSD 385 (405)
Q Consensus 320 ~t~l~~~l~~~~~~~~~~~~~-sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~ 385 (405)
+..++|.+...++|..+-..+ ++..-......++.+++++||+++..+++|..++++|++..+..+
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 457789999999999886555 777778788899999999999999999999999999999988754
No 70
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.49 E-value=0.00091 Score=53.34 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHhhchHHH-HHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCc
Q 015504 318 FVGSVLSDYFWALSVVWTTPLVA-TLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSD 385 (405)
Q Consensus 318 ~~~t~l~~~l~~~~~~~~~~~~~-sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~ 385 (405)
+++..+++++...++|..+...+ ++..-+......+.+++++||++++.+++|..+++.|++..+..+
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~~ 104 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLST 104 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhccC
Confidence 34567899999999999886555 777778888899999999999999999999999999999987643
No 71
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.38 E-value=0.0016 Score=52.25 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHhhchHHH-HHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhc
Q 015504 319 VGSVLSDYFWALSVVWTTPLVA-TLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANL 383 (405)
Q Consensus 319 ~~t~l~~~l~~~~~~~~~~~~~-sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~ 383 (405)
++..+++++...++|+.+...+ ++..-+......+.+++++||++++.+++|..+|+.|++..+.
T Consensus 43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lkl 108 (109)
T PRK10650 43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIKL 108 (109)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 3467899999999999886665 6777777888999999999999999999999999999998753
No 72
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.29 E-value=0.0032 Score=60.91 Aligned_cols=148 Identities=16% Similarity=0.200 Sum_probs=93.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCCccCCCchhHHHHH
Q 015504 235 HNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIW-PLNAAGIEPPFRFPHSQSVGEVL 313 (405)
Q Consensus 235 ~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~i 313 (405)
+...|+++.+++++||+.+.+-.||... - ..+..+. ..+++..++ .|... .+...++..... ..+...+...
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~~k~-w--~wE~~W~--v~gi~~wl~-~~~~~g~~~~~~f~~~~~-~~~~~~~~~~ 76 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKKVKK-W--SWETMWS--VGGIFSWLI-LPWLIAALLLPDFWAYYS-SFSGSTLLPV 76 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccccCC-C--chhHHHH--HHHHHHHHH-HHHHHHHHHhhhHHHHHH-hcCHHHHHHH
Confidence 3678999999999999999999998432 1 2222222 223333222 12110 110000000011 1224456566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHH-HHHhhchHHHHHHHHHHHcCCCc-------cHHHHHHHHHHHHHHHHhhcCc
Q 015504 314 LLNGFVGSVLSDYFWALSVVWTTPLVA-TLGMSLTMPLAMVADMVIHGRHY-------SAIYIFGCLQVFAGFIIANLSD 385 (405)
Q Consensus 314 l~~g~~~t~l~~~l~~~~~~~~~~~~~-sv~~~l~~~~a~i~~~i~~ge~~-------~~~~iiG~~lI~~g~~l~~~~~ 385 (405)
+..|++ ..++...+..++|+.+-+.+ .+..-++.+++.+++.+++||-. ....++|.+++++|+++..+..
T Consensus 77 ~l~G~~-W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 77 FLFGAL-WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHHHH-HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 666765 88999999999999996665 44445667778899999998643 3468899999999999999954
Q ss_pred hhhhh
Q 015504 386 KFSAK 390 (405)
Q Consensus 386 ~~~~~ 390 (405)
+.++|
T Consensus 156 ~~k~~ 160 (345)
T PRK13499 156 QLKER 160 (345)
T ss_pred hhccc
Confidence 44443
No 73
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.15 E-value=0.0013 Score=53.79 Aligned_cols=69 Identities=19% Similarity=0.300 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHh-hhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecC
Q 015504 151 LTPIWFITEYFSNSALANTSVASTTVLT-STSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGK 219 (405)
Q Consensus 151 ~~~~~~~~~~~~~~al~~~s~~~~~~l~-~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~ 219 (405)
...++.++.+++..++++.+.+.+=.+. ....+.+.++++++++|+++..+++|+.+.++|++++-..+
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3446667888889999999999887774 68999999999999999999999999999999999886543
No 74
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.07 E-value=0.0018 Score=52.19 Aligned_cols=67 Identities=7% Similarity=0.114 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHH-hhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEec
Q 015504 152 TPIWFITEYFSNSALANTSVASTTVL-TSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVG 218 (405)
Q Consensus 152 ~~~~~~~~~~~~~al~~~s~~~~~~l-~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~ 218 (405)
..++.++.+++..+++..|.+.+=.+ .....+.+.++++++++|++++.+++|+.+.++|++++-..
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44566677778899999999988777 55788999999999999999999999999999999998543
No 75
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.06 E-value=0.015 Score=55.81 Aligned_cols=70 Identities=20% Similarity=0.162 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCchhhh
Q 015504 320 GSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDKFSA 389 (405)
Q Consensus 320 ~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~~~~ 389 (405)
...++..+.+.++++++...-.+.-+..++..++++++++|++.+..++++.+++.+|+++....+..++
T Consensus 73 ~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~ 142 (303)
T PF08449_consen 73 LFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS 142 (303)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence 3677788899999999988888889999999999999999999999999999999999999988765333
No 76
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.02 E-value=0.031 Score=47.01 Aligned_cols=132 Identities=16% Similarity=0.116 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHHHHHHHH
Q 015504 239 GDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLLLNGF 318 (405)
Q Consensus 239 G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~il~~g~ 318 (405)
..++++++.++-+++..+..++.++..+...........|.....+. ....+.++...++.. .|+.. ..|+
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~------~~~~~~~~~~~~~~~--p~w~~-lGG~ 72 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLII------LLITGRPSLASLSSV--PWWAY-LGGL 72 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH------HHHhcccccchhccC--ChHHh-ccHH
Confidence 45788899999999999988887754434444444444444443322 111111111112222 23332 2555
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHhhchHHH-HHHHHHH----HcCCCccHHHHHHHHHHHHHHHH
Q 015504 319 VGSVLSDYFWALSVVWTTPLVATLGMSLTMPL-AMVADMV----IHGRHYSAIYIFGCLQVFAGFII 380 (405)
Q Consensus 319 ~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~-a~i~~~i----~~ge~~~~~~iiG~~lI~~g~~l 380 (405)
+ .++...+....+.+.++..+.......-.+ +.++|.+ .-..+++..+++|.+++++|+++
T Consensus 73 l-G~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 73 L-GVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred H-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 5 455667777888999988887776666554 8999986 23578999999999999999864
No 77
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.95 E-value=0.0045 Score=59.17 Aligned_cols=120 Identities=15% Similarity=0.127 Sum_probs=82.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHHHH
Q 015504 235 HNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLL 314 (405)
Q Consensus 235 ~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~il 314 (405)
+..+|..++++++++.+....+.|+-..|.+. .....- ... .+.-.++ .|+.
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~~---~~~---------------------~~~l~~~-~W~~-- 55 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRAG---SGG---------------------RSYLRRP-LWWI-- 55 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccc---chh---------------------hHHHhhH-HHHH--
Confidence 47899999999999999999999987553221 100000 000 0000011 2322
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcC
Q 015504 315 LNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLS 384 (405)
Q Consensus 315 ~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~ 384 (405)
|++..+++..+...+....+.+.++....+..+++++++..++||+++..+++|++++++|..+....
T Consensus 56 --G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 56 --GLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred --HHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence 12223444555666777778888888888989999999999999999999999999999998776543
No 78
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=96.92 E-value=0.14 Score=49.01 Aligned_cols=236 Identities=12% Similarity=0.142 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhHHHH-hhhhHHHHHHHHHHhcc-------ccchHHHHHHHHHhhhceEEEE
Q 015504 145 AKCSLYLTPIWFITEYFSNSALANTSVASTTVL-TSTSGLFTLFFGALLGQ-------DSITIAKLVAVFISMAGVAMTT 216 (405)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l-~~~~pv~~~ils~l~~~-------er~~~~~~~~i~l~~~Gv~ll~ 216 (405)
+....+.+++|.++...|-.+++|+..+....+ ..+..++-.++--++.+ ++-....++|++++++|++++.
T Consensus 73 l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g 152 (344)
T PF06379_consen 73 LFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICG 152 (344)
T ss_pred HHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHh
Confidence 344566688999999999999999998877665 45666666666444432 2334578899999999999998
Q ss_pred ecCCCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcC-------CCCCcch---HHHHH-HHHHHHHHHHH
Q 015504 217 VGKTWAADEFLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAG-------SEGDKVD---VQKFF-GYIGLFTFLGL 285 (405)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~-------~~~~~~~---~~~~~-~~~~~~~~~~~ 285 (405)
..+...+.+ .+.+..+.+...|.+++++|.+..|.+..-...-.+ ...++.. +...+ ...|+.+- ..
T Consensus 153 ~AG~~Ke~~-~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN-~~ 230 (344)
T PF06379_consen 153 KAGSMKEKE-LGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITN-LI 230 (344)
T ss_pred HHHHhhhhh-hccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHH-HH
Confidence 765432211 111123345679999999999999988775532211 0011110 11111 12222221 12
Q ss_pred HHHHHHHhhcCCC--CCccCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HH--HHHhhchHHHHHHHHHH
Q 015504 286 WWLIWPLNAAGIE--PPFRFPHS--QSVGEVLLLNGFVGSVLSDYFWALSVVWTTPL--VA--TLGMSLTMPLAMVADMV 357 (405)
Q Consensus 286 ~~~~~~~~~~~~e--~~~~~~~~--~~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~--~~--sv~~~l~~~~a~i~~~i 357 (405)
++......--.+. ..+..... ...+......|++ ....+++|..+-.+.++. .. .+.+.+...++-+.+.+
T Consensus 231 yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~l-Wy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~ 309 (344)
T PF06379_consen 231 YCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVL-WYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI 309 (344)
T ss_pred HHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH
Confidence 2221111000110 00111111 1233334444554 677777777777776643 33 34445555567788876
Q ss_pred HcCC------CccHHHHHHHHHHHHHHHHhhcC
Q 015504 358 IHGR------HYSAIYIFGCLQVFAGFIIANLS 384 (405)
Q Consensus 358 ~~ge------~~~~~~iiG~~lI~~g~~l~~~~ 384 (405)
. +| +.-...++|+++++.++.++-+.
T Consensus 310 l-kEWKg~s~kt~~vl~~G~~vlI~s~~ivG~G 341 (344)
T PF06379_consen 310 L-KEWKGASKKTIRVLVLGIAVLILSVVIVGYG 341 (344)
T ss_pred H-HHhccCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 4 44 34456788999999998887664
No 79
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.90 E-value=0.0039 Score=50.03 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHH-hhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEE
Q 015504 152 TPIWFITEYFSNSALANTSVASTTVL-TSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMT 215 (405)
Q Consensus 152 ~~~~~~~~~~~~~al~~~s~~~~~~l-~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll 215 (405)
..++.++.++...++++.|.+.+=.+ ...-.+.+.+.++++++|++++.|++|+.+.+.|++++
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 44556677788899999999887666 45788999999999999999999999999999999875
No 80
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.0039 Score=49.33 Aligned_cols=64 Identities=22% Similarity=0.261 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhccchhhHHHH-hhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEe
Q 015504 154 IWFITEYFSNSALANTSVASTTVL-TSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTV 217 (405)
Q Consensus 154 ~~~~~~~~~~~al~~~s~~~~~~l-~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~ 217 (405)
.+..+.++...++++.|.+.+=.+ ...-.+.+.+.++++++|+++..|++++.+.++|++.+-.
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 344556666789999998887655 5678899999999999999999999999999999987643
No 81
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.84 E-value=0.0055 Score=48.88 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHh-hhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEE
Q 015504 152 TPIWFITEYFSNSALANTSVASTTVLT-STSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTT 216 (405)
Q Consensus 152 ~~~~~~~~~~~~~al~~~s~~~~~~l~-~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~ 216 (405)
..++..+.++...+++..|.+.+=.+. ..-.+.+.+++++++||++++.+++|+.+.++|++.+-
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 345566777788999999988876664 57889999999999999999999999999999999874
No 82
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=96.83 E-value=0.02 Score=54.73 Aligned_cols=155 Identities=19% Similarity=0.247 Sum_probs=94.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc-cCCCchhHHHHH
Q 015504 235 HNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPF-RFPHSQSVGEVL 313 (405)
Q Consensus 235 ~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~i 313 (405)
....|+++..+++++.+.+.+=.||..+ .+...+-...++++.++..+....+...+..... +.|. ..+...
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk~-----WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~--~~l~~~ 76 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKVKG-----WSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPA--STLFWT 76 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhcCC-----ccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCCh--hHHHHH
Confidence 3679999999999999999999998754 2232222223555554332221111111111001 1232 234445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHH-HHHHhhchHHHHHHHHHHHcCC-------CccHHHHHHHHHHHHHHHHhhcCc
Q 015504 314 LLNGFVGSVLSDYFWALSVVWTTPLV-ATLGMSLTMPLAMVADMVIHGR-------HYSAIYIFGCLQVFAGFIIANLSD 385 (405)
Q Consensus 314 l~~g~~~t~l~~~l~~~~~~~~~~~~-~sv~~~l~~~~a~i~~~i~~ge-------~~~~~~iiG~~lI~~g~~l~~~~~ 385 (405)
...|++ ..++-..|-.++|+.+-.. -++..-+...++.++--++.|+ +-....++|.++.++|+.+..+..
T Consensus 77 ~l~G~l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG 155 (344)
T PF06379_consen 77 FLFGVL-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAG 155 (344)
T ss_pred HHHHHH-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHH
Confidence 556665 8889999999999998443 3444445555555554444432 234578999999999999999987
Q ss_pred hhhhhHHHHhhh
Q 015504 386 KFSAKIELLQMK 397 (405)
Q Consensus 386 ~~~~~~~~~~~~ 397 (405)
..|+|+...+.+
T Consensus 156 ~~Ke~~~~~~~~ 167 (344)
T PF06379_consen 156 SMKEKELGEEAK 167 (344)
T ss_pred Hhhhhhhccchh
Confidence 766655444433
No 83
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.47 E-value=0.045 Score=51.08 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHH----HHHHhhhceEE
Q 015504 147 CSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLV----AVFISMAGVAM 214 (405)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~----~i~l~~~Gv~l 214 (405)
..++.|++|..+|++|+.+.+...++.+=.+.++.++...+-+.+++||+=+++++. |+++.++|.++
T Consensus 197 ~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 197 KNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 356778899999999999999999999999999999999999999999998877554 55555555543
No 84
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.37 E-value=0.012 Score=45.95 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhccchhhHHH-HhhhhHHHHHHHHHHhccccchHHHHHHHHH
Q 015504 154 IWFITEYFSNSALANTSVASTTV-LTSTSGLFTLFFGALLGQDSITIAKLVAVFI 207 (405)
Q Consensus 154 ~~~~~~~~~~~al~~~s~~~~~~-l~~~~pv~~~ils~l~~~er~~~~~~~~i~l 207 (405)
++..+.+++..++++.+.+.+=. ......+.+.+++.++++|+++..|++|+.+
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 56667788899999999999844 4568999999999999999999999999876
No 85
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.28 E-value=0.037 Score=50.49 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEE
Q 015504 143 AIAKCSLYLTPI-WFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTT 216 (405)
Q Consensus 143 ~~~~~~~~~~~~-~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~ 216 (405)
.++..++..+++ -.+-+.+-+.++...+..+.+.+.++-|.+.++.++++++|++|..||+++...+++..=.+
T Consensus 207 ~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~ 281 (292)
T COG5006 207 SLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST 281 (292)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence 445555444433 23344566799999999999999999999999999999999999999999988877766444
No 86
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.24 E-value=0.019 Score=46.24 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHh-hhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEE
Q 015504 152 TPIWFITEYFSNSALANTSVASTTVLT-STSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMT 215 (405)
Q Consensus 152 ~~~~~~~~~~~~~al~~~s~~~~~~l~-~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll 215 (405)
..+...+...|++.+...+.+.+.-+. ++.=+||++.++++.+|..++++++|+++.+.|+.++
T Consensus 48 f~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 48 FLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 446677888999999999999999997 7789999999998888888999999999999999886
No 87
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.22 E-value=0.017 Score=45.04 Aligned_cols=56 Identities=23% Similarity=0.191 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhchHHH-HHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 015504 319 VGSVLSDYFWALSVVWTTPLVA-TLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQV 374 (405)
Q Consensus 319 ~~t~l~~~l~~~~~~~~~~~~~-sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI 374 (405)
.+..++++++..++|+.+...+ ++..-+......+.+++++||+++..+++|..+|
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3567889999999999887777 5556677888999999999999999999999876
No 88
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=95.70 E-value=0.045 Score=50.73 Aligned_cols=68 Identities=12% Similarity=0.172 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCchhh
Q 015504 321 SVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDKFS 388 (405)
Q Consensus 321 t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~~~ 388 (405)
..+.+.+.+.++++.+|..-.+.....+++++++.+++++.+++..+|++..+++.|+.+.+.++...
T Consensus 27 Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 27 YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 56778889999999999999999999999999999999999999999999999999999999876544
No 89
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.20 E-value=0.53 Score=39.89 Aligned_cols=140 Identities=16% Similarity=0.085 Sum_probs=76.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHHHHH
Q 015504 236 NITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLLL 315 (405)
Q Consensus 236 ~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~il~ 315 (405)
..+..+.++++.++-.++.-+.-++.+...++......-..+|...+..... . ..+.. .+.... ...|+.. .
T Consensus 3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l----~-~~~~~-~~a~~~-~~pwW~~-~ 74 (150)
T COG3238 3 MYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLL----I-KQGHP-GLAAVA-SAPWWAW-I 74 (150)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH----H-hcCCC-chhhcc-CCchHHH-H
Confidence 4567888899999999998888777764333333333333444444433211 1 11111 122111 1224332 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhchH-HHHHHhhchHHHHHHHHHHHcC----CCccHHHHHHHHHHHHHHHHhhcC
Q 015504 316 NGFVGSVLSDYFWALSVVWTTPL-VATLGMSLTMPLAMVADMVIHG----RHYSAIYIFGCLQVFAGFIIANLS 384 (405)
Q Consensus 316 ~g~~~t~l~~~l~~~~~~~~~~~-~~sv~~~l~~~~a~i~~~i~~g----e~~~~~~iiG~~lI~~g~~l~~~~ 384 (405)
-|+++ ++.-+.-.....+.+++ +..+...=+...++++|.+=.. .+++...++|.+++++|+++....
T Consensus 75 GG~lG-a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 75 GGLLG-AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred ccchh-hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 33433 22222233344444543 3444444455668888876543 579999999999999996665543
No 90
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=94.88 E-value=0.016 Score=53.27 Aligned_cols=138 Identities=11% Similarity=0.099 Sum_probs=87.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHHHH
Q 015504 235 HNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLL 314 (405)
Q Consensus 235 ~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~il 314 (405)
...+|..+..++ ..+....++.++....++...+...... ..+.+..+ ..... .+ +.-|...+.|+ +
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~-~mlit~pc------liy~~--~~-v~gp~g~R~~L--i 101 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLV-RMLITYPC------LIYYM--QP-VIGPEGKRKWL--I 101 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhh-ehhhhheE------EEEEe--ee-eecCCCcEEEE--E
Confidence 345677777777 6666667777777764433322222110 01111111 01111 10 21233344443 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCch
Q 015504 315 LNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDK 386 (405)
Q Consensus 315 ~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~ 386 (405)
.=|+. ...+..+.+++.++.+-.-|+++...+|.+..+++|++++|++|....+|..+-+.|+++..+++-
T Consensus 102 LRg~m-G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpF 172 (346)
T KOG4510|consen 102 LRGFM-GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPF 172 (346)
T ss_pred eehhh-hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCc
Confidence 22333 233456667788888888899988998999999999999999999999999999999999988753
No 91
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=94.65 E-value=0.28 Score=41.21 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=42.3
Q ss_pred HHHHHhhccchhhHHHHhhh-hHHHHHHHHHH----hccccchHHHHHHHHHhhhceEE
Q 015504 161 FSNSALANTSVASTTVLTST-SGLFTLFFGAL----LGQDSITIAKLVAVFISMAGVAM 214 (405)
Q Consensus 161 ~~~~al~~~s~~~~~~l~~~-~pv~~~ils~l----~~~er~~~~~~~~i~l~~~Gv~l 214 (405)
+.....+..+++..+.+.-+ +.+...++..+ .-|+++++.|++|+++.++|+++
T Consensus 80 ~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 80 SNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 33678899999888888655 55666666664 35889999999999999999864
No 92
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.42 E-value=0.016 Score=52.55 Aligned_cols=133 Identities=10% Similarity=0.004 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHHHHHHHH
Q 015504 239 GDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLLLNGF 318 (405)
Q Consensus 239 G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~il~~g~ 318 (405)
+.+.+++=++.|+..-....|.-.+ +..+ ..-+...++...+. .+.+...| .+...+..-+..|.
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG~--p~qQ-~lGtT~GALifaii------v~~~~~p~------~T~~~~iv~~isG~ 67 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGGK--PYQQ-TLGTTLGALIFAII------VFLFVSPE------LTLTIFIVGFISGA 67 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCCC--hhHh-hhhccHHHHHHHHH------HheeecCc------cchhhHHHHHHhhh
Confidence 5688999999999987777766542 2111 11112211111111 11121111 12334444455565
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHhhc-hHHHHHHHHHHHcCCCccHHH----HHHHHHHHHHHHHhhcCchh
Q 015504 319 VGSVLSDYFWALSVVWTTPLVATLGMSL-TMPLAMVADMVIHGRHYSAIY----IFGCLQVFAGFIIANLSDKF 387 (405)
Q Consensus 319 ~~t~l~~~l~~~~~~~~~~~~~sv~~~l-~~~~a~i~~~i~~ge~~~~~~----iiG~~lI~~g~~l~~~~~~~ 387 (405)
+ +.++...++++++..+.+++....+= +.+-+.+++++.+||-.+..+ .++.++++.|+++..+.++.
T Consensus 68 ~-Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~ 140 (288)
T COG4975 68 F-WSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRN 140 (288)
T ss_pred H-hhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccc
Confidence 4 78899999999999998888776554 344489999999999887744 34577888999998887653
No 93
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.12 E-value=0.08 Score=51.03 Aligned_cols=75 Identities=13% Similarity=0.143 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCchhh
Q 015504 313 LLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDKFS 388 (405)
Q Consensus 313 il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~~~ 388 (405)
.++.+.+ +.++.+.++.++.+++....++..+..-.+...++.++.+|++|..+.++..+-++|++++...+.++
T Consensus 162 sl~fc~l-WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 162 SLFFCPL-WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHH-HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 3444544 78899999999999999999999999999999999999999999999999999999999999875544
No 94
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=93.55 E-value=0.065 Score=47.01 Aligned_cols=65 Identities=11% Similarity=0.307 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCch
Q 015504 322 VLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDK 386 (405)
Q Consensus 322 ~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~ 386 (405)
..+.++|..++++++|+.++....+.-.+..+++++.+|+++....++..++.+.|+++..+.+.
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 44688899999999999999999999999999999999999999999999999999999887654
No 95
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=93.30 E-value=0.15 Score=46.43 Aligned_cols=57 Identities=7% Similarity=0.065 Sum_probs=52.0
Q ss_pred HHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEE
Q 015504 158 TEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAM 214 (405)
Q Consensus 158 ~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~l 214 (405)
.+.+....++|.++...++...+.++++.++++++++++++..++.|+.+.+.|+++
T Consensus 165 ~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 165 GGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred cCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 444557889999999999999999999999999999999999999999999999875
No 96
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=93.07 E-value=0.25 Score=39.85 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhhchHHHHHH-hhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHh
Q 015504 321 SVLSDYFWALSVVWTTPLVATLG-MSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIA 381 (405)
Q Consensus 321 t~l~~~l~~~~~~~~~~~~~sv~-~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~ 381 (405)
+..+...|+..+.+.+-+.+... ++++-.++++.++++.+|..+...++|+++|+.|+.+.
T Consensus 51 Nq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 51 NQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 45566777788888875555444 57888889999998888888999999999999998653
No 97
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.32 E-value=0.067 Score=50.58 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=84.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHH
Q 015504 233 RRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEV 312 (405)
Q Consensus 233 ~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 312 (405)
..++..|.++++.+++..+...++.||-..|.. . . .... .|..+..-.. ..||.
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-------------~-~---------~~ra--~~gg~~yl~~-~~Ww~ 69 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-------------A-S---------GLRA--GEGGYGYLKE-PLWWA 69 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHh-------------h-h---------cccc--cCCCcchhhh-HHHHH
Confidence 456789999999999999998888887665310 0 0 0011 0111221111 23433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCchhhhhH
Q 015504 313 LLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDKFSAKI 391 (405)
Q Consensus 313 il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~~~~~~ 391 (405)
|++...++-.+-+.+-...+++.++....+..+.+++++..+++|+++....+||.+.++|-.+...+..++++.
T Consensus 70 ----G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i 144 (335)
T KOG2922|consen 70 ----GMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEI 144 (335)
T ss_pred ----HHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccc
Confidence 233334444444445555567778878888899999999999999999999999999999977776654434433
No 98
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=89.78 E-value=0.54 Score=43.69 Aligned_cols=128 Identities=14% Similarity=0.025 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHHHHHHHH
Q 015504 239 GDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLLLNGF 318 (405)
Q Consensus 239 G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~il~~g~ 318 (405)
|.+.+++|+++++...+=.||+...| ..-.++++.....+...+ .....+. | ..+...+..|.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~gD--g~~fQw~~~~~i~~~g~~------v~~~~~~------p---~f~p~amlgG~ 63 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTGD--GFFFQWVMCSGIFLVGLV------VNLILGF------P---PFYPWAMLGGA 63 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCCC--cHHHHHHHHHHHHHHHHH------HHHhcCC------C---cceeHHHhhhh
Confidence 66788999999999999999887643 344455555433322221 1112221 1 11222233333
Q ss_pred HHHHHHHHHHHHHHHhhchHHH-HHHhhchHHHHHHHHHH-HcCCC-----ccHHHHHHHHHHHHHHHHhhcC
Q 015504 319 VGSVLSDYFWALSVVWTTPLVA-TLGMSLTMPLAMVADMV-IHGRH-----YSAIYIFGCLQVFAGFIIANLS 384 (405)
Q Consensus 319 ~~t~l~~~l~~~~~~~~~~~~~-sv~~~l~~~~a~i~~~i-~~ge~-----~~~~~iiG~~lI~~g~~l~~~~ 384 (405)
+ .+.+..+-.-.+|.++-... .+..+.....+...+-+ ++|++ -.+..++|.+++++|..+...-
T Consensus 64 l-W~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fi 135 (254)
T PF07857_consen 64 L-WATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFI 135 (254)
T ss_pred h-hhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeee
Confidence 3 55566666666666663322 33334444445554432 44442 3568899999999998877653
No 99
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=89.55 E-value=17 Score=35.28 Aligned_cols=65 Identities=14% Similarity=0.197 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCc
Q 015504 321 SVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSD 385 (405)
Q Consensus 321 t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~ 385 (405)
..+-+.+++.+..+.+|++-.+..-+.+.-++++.+++++++++..||...++..+|+.+++.+.
T Consensus 102 YalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~ 166 (345)
T KOG2234|consen 102 YALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPS 166 (345)
T ss_pred HHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC
Confidence 44555688889999999999999999888899999999999999999999999999999999543
No 100
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=85.17 E-value=1.5 Score=39.88 Aligned_cols=66 Identities=12% Similarity=0.256 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEe
Q 015504 152 TPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTV 217 (405)
Q Consensus 152 ~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~ 217 (405)
++.-.++|++.|.-+.+-++-+-+++..+--.|+.+.++++++..++.++|+|.++.+.|..+=..
T Consensus 248 ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 248 AIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred HHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence 334456788888999999999999999999999999999999999999999999999999877443
No 101
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=83.81 E-value=21 Score=34.03 Aligned_cols=66 Identities=17% Similarity=0.276 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEE
Q 015504 150 YLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMT 215 (405)
Q Consensus 150 ~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll 215 (405)
.++.+-|+...+-+.=+..|++-+.++..----+.+.+++.++++++++...|.|..++..|+..=
T Consensus 248 l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 248 LGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 344444444445556667777776666666677889999999999999999999999999999875
No 102
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=82.93 E-value=0.61 Score=44.75 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHh
Q 015504 308 SVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIA 381 (405)
Q Consensus 308 ~~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~ 381 (405)
..|..++-.|++ ..++..+-+.+.++.+-...-..-.++||+..++++++.+|+.+...+.-.+.++.|+.+.
T Consensus 81 ~~~~~llpl~~~-~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ia 153 (316)
T KOG1441|consen 81 LPLRTLLPLGLV-FCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIA 153 (316)
T ss_pred cchHHHHHHHHH-HHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEe
Confidence 456667777775 6778888899999999999999999999999999999999987664443333333333333
No 103
>PRK02237 hypothetical protein; Provisional
Probab=81.62 E-value=11 Score=29.88 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCch
Q 015504 348 MPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDK 386 (405)
Q Consensus 348 ~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~ 386 (405)
+..+.++.+.+-|.+|+...++|..+.++|+.+..+.+|
T Consensus 70 I~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 70 VAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 667889999999999999999999999999988876554
No 104
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=79.87 E-value=9.1 Score=30.33 Aligned_cols=39 Identities=10% Similarity=0.172 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCch
Q 015504 348 MPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDK 386 (405)
Q Consensus 348 ~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~ 386 (405)
+..+.+.++.+-|++|+...++|..+.++|+.+..+.+|
T Consensus 68 I~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 68 IVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 677999999999999999999999999999999877654
No 105
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=79.48 E-value=14 Score=34.30 Aligned_cols=118 Identities=12% Similarity=0.122 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHH-HHHHHH-hc---cccc--hHHHHHHHHHhhhceEEEEe
Q 015504 145 AKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFT-LFFGAL-LG---QDSI--TIAKLVAVFISMAGVAMTTV 217 (405)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~-~ils~l-~~---~er~--~~~~~~~i~l~~~Gv~ll~~ 217 (405)
...++++|.+|..+|.+-.-.++....+....+-++.-+.+ -..+.+ ++ +|.+ .....+|++++++|..+..+
T Consensus 55 ~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~f 134 (254)
T PF07857_consen 55 YPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSF 134 (254)
T ss_pred eeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheee
Confidence 34688899999999999999999999999999987744443 444432 23 2322 46788899999999988775
Q ss_pred cCCCc------cc---------cc-ccc------cc------ccccchhhHHHHHHHHHHHHHHHHHHHhhcC
Q 015504 218 GKTWA------AD---------EF-LSA------SE------SRRHNITGDIFGLLSAITYGLFTVLLKKSAG 262 (405)
Q Consensus 218 ~~~~~------~~---------~~-~~~------~~------~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~ 262 (405)
-+... .+ ++ .++ .+ ...+...|..+++++.+.|+...+=.....+
T Consensus 135 ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~ 207 (254)
T PF07857_consen 135 IKSEEKEPKKSSEETPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQD 207 (254)
T ss_pred ecCCCCCccccccccccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHh
Confidence 32211 00 00 000 00 0114678999999999999987765555544
No 106
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=77.98 E-value=6.2 Score=36.96 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcC
Q 015504 321 SVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLS 384 (405)
Q Consensus 321 t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~ 384 (405)
-..+..+.+.++.+++++.--+.---.+.+..+++..+++.+++..+|+|...+.+|++++...
T Consensus 96 Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 96 DIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 4555666777888877766655555557789999999999999999999999999999988765
No 107
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.69 E-value=20 Score=30.49 Aligned_cols=52 Identities=12% Similarity=0.295 Sum_probs=35.4
Q ss_pred HHhhccchhhHHHH-hhhhHHHHHHHHHHh----ccccchHHHHHHHHHhhhceEEE
Q 015504 164 SALANTSVASTTVL-TSTSGLFTLFFGALL----GQDSITIAKLVAVFISMAGVAMT 215 (405)
Q Consensus 164 ~al~~~s~~~~~~l-~~~~pv~~~ils~l~----~~er~~~~~~~~i~l~~~Gv~ll 215 (405)
.......++....+ .+-+.+...++-.+= -+++++..+++|+++.++|++++
T Consensus 88 ~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 88 LLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 45566665555555 455666666665432 25789999999999999995544
No 108
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.86 E-value=7.7 Score=36.95 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecC
Q 015504 145 AKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGK 219 (405)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~ 219 (405)
+....+.+++-+.-+|+-+.+.+..|+.+.++.....-..+.+...++.++++++..++|+.+++.|-++-.+..
T Consensus 228 ~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~ 302 (314)
T KOG1444|consen 228 LVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT 302 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence 333444555666778888999999999999999977888888888888899999999999999999888766543
No 109
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=73.45 E-value=64 Score=30.79 Aligned_cols=77 Identities=21% Similarity=0.173 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCch
Q 015504 309 VGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDK 386 (405)
Q Consensus 309 ~~~~il~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~ 386 (405)
.|+-..+.++ .+.++-.+.+.++|+.+=.+-.+.-+....-.++++.++.+.+.+..+++-+.+|-+|+.+....+.
T Consensus 82 pl~~y~~is~-tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~ 158 (327)
T KOG1581|consen 82 PLYKYSLISF-TNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPN 158 (327)
T ss_pred chhHHhHHHH-HhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecC
Confidence 3555555555 4677888999999999977777788888888899999999999999999999999999988777544
No 110
>PF11742 DUF3302: Protein of unknown function (DUF3302); InterPro: IPR011223 This is a family of uncharacterised bacterial proteins, restricted to the Gammaproteobacteria.
Probab=71.05 E-value=41 Score=25.13 Aligned_cols=62 Identities=18% Similarity=0.315 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHHHHHHHHHH---HHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015504 237 ITGDIFGLLSAITYGLFTVL---LKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIE 298 (405)
Q Consensus 237 ~~G~~l~l~sa~~~a~y~v~---~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 298 (405)
..+.++.+..++.|++..+- .|...+|+++..+.....++.++++.-.+||...+..+.+.|
T Consensus 5 a~~vli~~~~~~~~~~~~lh~lP~~iA~kr~Hpq~eaI~v~gwisLft~~~lWp~a~IwA~~d~~ 69 (78)
T PF11742_consen 5 ALVVLIFVVIVLIYGFWKLHDLPGKIAHKRNHPQAEAIHVLGWISLFTLHVLWPFAWIWAYLDRP 69 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 35677777777777775442 233344556667777788888888877789988887776554
No 111
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=64.76 E-value=2e+02 Score=31.47 Aligned_cols=44 Identities=9% Similarity=0.081 Sum_probs=31.6
Q ss_pred hhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEE
Q 015504 172 ASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMT 215 (405)
Q Consensus 172 ~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll 215 (405)
+.+.++..++|+-.+.++.+...+|.+...+.+.+-.++|.+-+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 56677888999999999988776665444555666666676654
No 112
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=64.70 E-value=7.2 Score=30.77 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHhh-hhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEE
Q 015504 154 IWFITEYFSNSALANTSVASTTVLTS-TSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTT 216 (405)
Q Consensus 154 ~~~~~~~~~~~al~~~s~~~~~~l~~-~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~ 216 (405)
+--.+..+|+.-++.++-+.+.-+.+ +.-+|+++.+..+..|...++.+.|..+.++|+.+..
T Consensus 61 lNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 61 LNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 44556778889999998888877754 5788999999877766677788889999999987764
No 113
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=62.46 E-value=9.4 Score=32.00 Aligned_cols=57 Identities=14% Similarity=0.090 Sum_probs=27.8
Q ss_pred hchHHHHHHhhchHHHHHHH-----HHHHcCCCccHHHHHHHHHHHHHHHHhhcCchhhhhHHH
Q 015504 335 TTPLVATLGMSLTMPLAMVA-----DMVIHGRHYSAIYIFGCLQVFAGFIIANLSDKFSAKIEL 393 (405)
Q Consensus 335 ~~~~~~sv~~~l~~~~a~i~-----~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~~~~~~~~ 393 (405)
-+...++...|+.|++..++ ++++++|.+. .+.+.+...+|++++-...++..++..
T Consensus 72 kslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~--~~~~~lg~~l~fl~~r~ysRkl~~~~~ 133 (150)
T COG3086 72 KSLLKSALLVYIFPLVGLFLGAILAQYLFFSELIV--IFGAFLGLALGFLLARRYSRKLAKRTE 133 (150)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 33444444555555544444 4444555432 333444555677776555544444433
No 114
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=61.87 E-value=10 Score=30.06 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEec
Q 015504 179 STSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVG 218 (405)
Q Consensus 179 ~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~ 218 (405)
..+.+...+..+.+-++|+.+..++|..++++|+.++.+.
T Consensus 65 GvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 65 GVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 3566777888888899999999999999999999999875
No 115
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=61.38 E-value=11 Score=29.77 Aligned_cols=30 Identities=10% Similarity=0.175 Sum_probs=25.6
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHHHHHh
Q 015504 352 MVADMVIHGRHYSAIYIFGCLQVFAGFIIA 381 (405)
Q Consensus 352 ~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~ 381 (405)
+.++++++||++.+..+.|.++++.+++..
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 456678899999999999999999887654
No 116
>PRK02237 hypothetical protein; Provisional
Probab=61.21 E-value=9.7 Score=30.24 Aligned_cols=40 Identities=10% Similarity=0.015 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEec
Q 015504 179 STSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVG 218 (405)
Q Consensus 179 ~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~ 218 (405)
..+.+...+..+.+-++|++...++|..++++|+.++.+.
T Consensus 67 GvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 67 GVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred hHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 4556777788888899999999999999999999888764
No 117
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=59.05 E-value=21 Score=28.09 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecC
Q 015504 179 STSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGK 219 (405)
Q Consensus 179 ~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~ 219 (405)
..+.+...+..+..-+.|+.+..++|..++++|+.++.+..
T Consensus 66 GvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 66 GVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred chHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 45667777778888899999999999999999999988764
No 118
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=58.93 E-value=71 Score=25.33 Aligned_cols=51 Identities=12% Similarity=0.112 Sum_probs=34.8
Q ss_pred HhhccchhhHHHHhhh-hHHHHHHHHHHhccccchHHHHHHHHHhhhceEEE
Q 015504 165 ALANTSVASTTVLTST-SGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMT 215 (405)
Q Consensus 165 al~~~s~~~~~~l~~~-~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll 215 (405)
|.+.-+++.--+++=. +-..-..++.+++||++++..+.|-++.+.+++.+
T Consensus 55 G~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 55 GYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred hccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 4444455555555432 23333567788999999999999999888887765
No 119
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=55.75 E-value=46 Score=31.22 Aligned_cols=54 Identities=13% Similarity=0.148 Sum_probs=47.2
Q ss_pred hhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecC
Q 015504 166 LANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGK 219 (405)
Q Consensus 166 l~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~ 219 (405)
++.-.+..++.++..=-..|.+++++++.+++|..-..+..+.+.|+++=.+++
T Consensus 281 I~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 281 IKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 344577888888888889999999999999999999999999999999977765
No 120
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=54.61 E-value=34 Score=26.97 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCch
Q 015504 348 MPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDK 386 (405)
Q Consensus 348 ~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~ 386 (405)
+..+.++.+.+-|.+++-..++|..+.++|+.+....++
T Consensus 69 I~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 69 IAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 667899999999999999999999999999888776644
No 121
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=52.72 E-value=4.6 Score=37.66 Aligned_cols=53 Identities=11% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHhhccchhhHHHHhhhhHHHHHHHHHHh-cccc-chHHHHHHHHHhhhceEEEE
Q 015504 164 SALANTSVASTTVLTSTSGLFTLFFGALL-GQDS-ITIAKLVAVFISMAGVAMTT 216 (405)
Q Consensus 164 ~al~~~s~~~~~~l~~~~pv~~~ils~l~-~~er-~~~~~~~~i~l~~~Gv~ll~ 216 (405)
+-+.-.+-+..+++.+...+++.|+-.++ +|+| +-+.-.+|+++.++-..+..
T Consensus 42 iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~ 96 (381)
T PF05297_consen 42 IIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSM 96 (381)
T ss_dssp -------------------------------------------------------
T ss_pred HHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH
Confidence 34445555556667666555554444333 4444 56778888888777665544
No 122
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=51.00 E-value=82 Score=28.28 Aligned_cols=77 Identities=13% Similarity=0.053 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHH-----------HHhhhhHHHHHHHHHHhccccch---------
Q 015504 139 LSSWAIAKCSLYLTPIWFITEYFSNSALANTSVASTT-----------VLTSTSGLFTLFFGALLGQDSIT--------- 198 (405)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~-----------~l~~~~pv~~~ils~l~~~er~~--------- 198 (405)
.+..+.+..++..+....-+...|..+......+..+ .+..+.|+..+++.+.+.++|..
T Consensus 109 ~~~~~~~~lg~~~~~~~~~~~~~~laa~~~I~~~~~~~~~~~~~l~~y~~i~~~~~~~pll~~~~~~~r~~~~l~r~~~w 188 (214)
T PF11139_consen 109 ASPGGAFWLGFVLGLANPKTMLPYLAAIAIIAASGLSPGTQVVALVVYCLIASLPALLPLLAYLVAPERAEPWLERLRSW 188 (214)
T ss_pred CCchhHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444556666666555444445555555443332211 11245678888888888777763
Q ss_pred ----HHHHHHHHHhhhceEEE
Q 015504 199 ----IAKLVAVFISMAGVAMT 215 (405)
Q Consensus 199 ----~~~~~~i~l~~~Gv~ll 215 (405)
.+++.++++.++|++++
T Consensus 189 l~~~~~~i~~~i~~i~G~~l~ 209 (214)
T PF11139_consen 189 LRRHSRQILAVILLIVGALLL 209 (214)
T ss_pred HHHccHHHHHHHHHHHHHHHH
Confidence 24455666666665554
No 123
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.35 E-value=1.2e+02 Score=23.70 Aligned_cols=33 Identities=6% Similarity=0.034 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhc
Q 015504 351 AMVADMVIHGRHYSAIYIFGCLQVFAGFIIANL 383 (405)
Q Consensus 351 a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~ 383 (405)
=+.++++.++|++.+..+.|..++..|++..-+
T Consensus 83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 345778889999999999999999999887643
No 124
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=50.29 E-value=16 Score=28.96 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhchHHH-HHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHh
Q 015504 324 SDYFWALSVVWTTPLVA-TLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIA 381 (405)
Q Consensus 324 ~~~l~~~~~~~~~~~~~-sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~ 381 (405)
+..+|+.-+.+++-+.+ -+-++++..+.++.+..+-.|...-..++|..+++.|+.+.
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 44555555555553333 33455667778889988666677889999999999998775
No 125
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=47.78 E-value=1.8 Score=39.90 Aligned_cols=71 Identities=23% Similarity=0.343 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCc
Q 015504 314 LLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSD 385 (405)
Q Consensus 314 l~~g~~~t~l~~~l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~ 385 (405)
+..+++ -+=++++...|-++++-+.+.+.-.-.+|...++.|++++.+.-+.++.|.++.++|+.++...+
T Consensus 82 illa~~-DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sD 152 (336)
T KOG2766|consen 82 ILLAFV-DVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSD 152 (336)
T ss_pred hheeEE-eecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEee
Confidence 334443 45566777788899999999998889999999999999999999999999999999998877654
No 126
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=47.60 E-value=25 Score=31.90 Aligned_cols=66 Identities=11% Similarity=0.105 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEE
Q 015504 149 LYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAM 214 (405)
Q Consensus 149 ~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~l 214 (405)
++.+++-+...++--+.+.-++.++.+++-++.-.-.++-+.++++++.+..++.++.+++...++
T Consensus 228 ~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~i 293 (309)
T COG5070 228 FISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAI 293 (309)
T ss_pred HHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 334445555666667788888999999998888888888888888888888888777765544433
No 127
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=45.08 E-value=16 Score=26.11 Aligned_cols=43 Identities=26% Similarity=0.179 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcEeeheecch
Q 015504 3 WKYQAGLGLIGAFVLIWITSAEITQKIFTE--YRQPFALTYLGVS 45 (405)
Q Consensus 3 ~~~~~g~~~~l~~~i~w~~~~~l~q~i~~~--~~~P~~~t~~~~~ 45 (405)
.++.++.+++++..++|...+...+|+-+| -..||++.-+...
T Consensus 2 ~~~~l~~~~~llg~~~l~i~~~~~syVd~~G~L~EpFfLiPlg~l 46 (63)
T PF13127_consen 2 KKYILSLILLLLGVVCLFIFNIIGSYVDEDGVLHEPFFLIPLGYL 46 (63)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccceECCCCeEecccHHHHHHHH
Confidence 367889999999999999999999999988 6888766555433
No 128
>COG2149 Predicted membrane protein [Function unknown]
Probab=44.15 E-value=1.4e+02 Score=24.20 Aligned_cols=43 Identities=12% Similarity=0.151 Sum_probs=28.0
Q ss_pred CccHHHHHHHHHHHHHHHHhhcCchhhhhHHHHhhhhhccccc
Q 015504 362 HYSAIYIFGCLQVFAGFIIANLSDKFSAKIELLQMKLLCINVH 404 (405)
Q Consensus 362 ~~~~~~iiG~~lI~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 404 (405)
++...+.+|..+++.|+.+....-..-++.+.++.|-+.++.+
T Consensus 52 ~~~~r~~lg~fii~~gil~~a~g~~r~~~~~~amrr~~~~p~~ 94 (120)
T COG2149 52 TPVIRELLGVFLILVGILLAALGALRWQRVERAMRRGFYLPYL 94 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 6677888899999999888877644333333344555544444
No 129
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=41.85 E-value=70 Score=30.16 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=35.8
Q ss_pred hhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEE
Q 015504 172 ASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTT 216 (405)
Q Consensus 172 ~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~ 216 (405)
=++++....=-.+..+++.+.++..+++..|+|..+.++|.++-+
T Consensus 269 LTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 269 LTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred eEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 334455555667888899888999999999999999999988765
No 130
>PRK10666 ammonium transporter; Provisional
Probab=41.83 E-value=3.9e+02 Score=27.05 Aligned_cols=122 Identities=18% Similarity=0.130 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc------hhhHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCC
Q 015504 148 SLYLTPIWFITEYFSNSALANTS------VASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTW 221 (405)
Q Consensus 148 ~~~~~~~~~~~~~~~~~al~~~s------~~~~~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~ 221 (405)
.+++.++....++.|+-+..... +...|.+....-..+.++.-...+.|++.....--++ +|.+-++-.-+
T Consensus 223 ~~lGt~lLw~GW~gFN~Gs~~~~~~~a~~a~~nT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~L--aGLVaITa~a~- 299 (428)
T PRK10666 223 VFTGTAILYIGWFGFNAGSAGAANEIAALAFVNTVVATAAAILGWVFGEWALRGKPSLLGACSGAI--AGLVGVTPACG- 299 (428)
T ss_pred HHHHHHHHHHHHHhccchhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHh--hhhhhcccccc-
Confidence 44555444457777777765432 1223333333333333333233456777655543222 55555532211
Q ss_pred ccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHH
Q 015504 222 AADEFLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLG 284 (405)
Q Consensus 222 ~~~~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (405)
.-..+...+...++++.+-......|+..+ .++..+....=+..|+++.+.
T Consensus 300 -----------~v~p~~A~iiG~vag~v~~~~~~~l~~~~~-iDD~~~a~~vHgv~Gi~G~l~ 350 (428)
T PRK10666 300 -----------YVGVGGALIIGVVAGLAGLWGVTMLKRWLR-VDDPCDVFGVHGVCGIVGCIL 350 (428)
T ss_pred -----------cCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCcCccHhhhHhHHHHHHH
Confidence 112344555555555554433333454333 344555555555666666553
No 131
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.22 E-value=8.6 Score=35.93 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=46.6
Q ss_pred HHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCc
Q 015504 329 ALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSD 385 (405)
Q Consensus 329 ~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~ 385 (405)
+..+++.+...--++-+++.|+++++.+++++++-+...+.+|.+|+.|+.+-...+
T Consensus 120 nlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE 176 (347)
T KOG1442|consen 120 NLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQE 176 (347)
T ss_pred ceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccc
Confidence 444555555555566788899999999999999999999999999999998866554
No 132
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=30.39 E-value=34 Score=28.32 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=5.2
Q ss_pred HHHHHHHHHhhc
Q 015504 372 LQVFAGFIIANL 383 (405)
Q Consensus 372 ~lI~~g~~l~~~ 383 (405)
+...+|+++.-+
T Consensus 105 ~~l~~~~~~~~~ 116 (135)
T PF04246_consen 105 LGLALGFLILRL 116 (135)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 133
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=26.04 E-value=88 Score=21.54 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhceEEEEecCCCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcC
Q 015504 200 AKLVAVFISMAGVAMTTVGKTWAADEFLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAG 262 (405)
Q Consensus 200 ~~~~~i~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~ 262 (405)
..++|.++.++|++++..++. |.+..+++-...|.+....|+...
T Consensus 4 v~v~G~~lv~~Gii~~~lPGp------------------G~l~i~~GL~iLa~ef~wArr~l~ 48 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPGP------------------GLLVIFLGLAILATEFPWARRLLR 48 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCCC------------------cHHHHHHHHHHHHHhhHHHHHHHH
Confidence 357788999999999887642 677777777778888777777654
No 134
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=24.74 E-value=4.2e+02 Score=23.14 Aligned_cols=39 Identities=10% Similarity=0.065 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHhccccchHHHHH-HHHHhhhceEEEEecCC
Q 015504 181 SGLFTLFFGALLGQDSITIAKLV-AVFISMAGVAMTTVGKT 220 (405)
Q Consensus 181 ~pv~~~ils~l~~~er~~~~~~~-~i~l~~~Gv~ll~~~~~ 220 (405)
..+....+.++.. +|+.+.+++ ++++.+.|..-+.++++
T Consensus 32 At~i~l~~~w~~~-rkv~km~l~s~~~v~vFG~lTl~f~~d 71 (180)
T COG2917 32 ATVIQLAILWIKY-RKVEKMQLISGVVVVVFGGLTLIFHND 71 (180)
T ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhchhHhhccCc
Confidence 3455556666554 455655555 66666778777777654
No 135
>PHA02088 hypothetical protein
Probab=24.14 E-value=76 Score=24.71 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhhcCchhhhhHHHHhhh
Q 015504 366 IYIFGCLQVFAGFIIANLSDKFSAKIELLQMK 397 (405)
Q Consensus 366 ~~iiG~~lI~~g~~l~~~~~~~~~~~~~~~~~ 397 (405)
..+.|..+.+.+.....+.++|++|-+.++.+
T Consensus 5 ifi~~~~~~liac~~s~wd~~w~~k~~~e~~~ 36 (125)
T PHA02088 5 IFIAGLVLGLIACCFSTWDSRWRKKARNEQAK 36 (125)
T ss_pred EEeHHHHHHHHHhhhHHhhHHHHHHHHHHHHH
Confidence 35678888999999999999999988766544
No 136
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=23.27 E-value=64 Score=27.18 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=14.0
Q ss_pred chhhHHHHhhhhHHHHHHHHHHh
Q 015504 170 SVASTTVLTSTSGLFTLFFGALL 192 (405)
Q Consensus 170 s~~~~~~l~~~~pv~~~ils~l~ 192 (405)
+.-.++.|.+..|+++++++.++
T Consensus 73 slL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 73 SLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666677777776654
No 137
>PF14150 YesK: YesK-like protein
Probab=22.46 E-value=3.5e+02 Score=20.44 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015504 310 GEVLLLNGFVGSVLSDY 326 (405)
Q Consensus 310 ~~~il~~g~~~t~l~~~ 326 (405)
...+....++++.+++.
T Consensus 59 ~g~~~~~v~ig~~ig~i 75 (81)
T PF14150_consen 59 LGVIAFFVFIGSIIGYI 75 (81)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445555555543
No 138
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.45 E-value=3.9e+02 Score=21.03 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 015504 269 DVQKFFGYIGLFTFLGLWWLIWP 291 (405)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~ 291 (405)
+....++..|.++.-+..|.+..
T Consensus 37 ~~~~~l~~~g~IG~~~v~pil~G 59 (100)
T TIGR02230 37 SIWEGLGMFGLIGWSVAIPTLLG 59 (100)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666555555543
No 139
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=22.22 E-value=50 Score=23.29 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhcCchhhhhHHHHhhhhh
Q 015504 368 IFGCLQVFAGFIIANLSDKFSAKIELLQMKLL 399 (405)
Q Consensus 368 iiG~~lI~~g~~l~~~~~~~~~~~~~~~~~~~ 399 (405)
++|.+|++.|+.+..+.-...+.-.++-.|.+
T Consensus 2 iigi~Llv~GivLl~~G~~~~~S~~s~~s~~~ 33 (59)
T PF11381_consen 2 IIGIALLVGGIVLLYFGYQASDSLGSQVSRAF 33 (59)
T ss_pred eeeehHHHHHHHHHHhhhhhhhhHHHHHHHHh
Confidence 56889999999999887666666666666666
No 140
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=21.87 E-value=94 Score=23.06 Aligned_cols=42 Identities=2% Similarity=0.001 Sum_probs=24.4
Q ss_pred hchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCch
Q 015504 345 SLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDK 386 (405)
Q Consensus 345 ~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~ 386 (405)
.+.-+++.+.|++.-+-..+...++++.++.+-+.+-+++-+
T Consensus 18 ~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~lv~vP~Wp~y 59 (76)
T PF06645_consen 18 IISAIISFIVGYITQSFSYTFYIYGAGVVLTLLVVVPPWPFY 59 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeCCcHhh
Confidence 333555667777665555556666666666555566555543
No 141
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=21.66 E-value=4.8e+02 Score=21.75 Aligned_cols=49 Identities=18% Similarity=0.070 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHhhchHH-HHHHHHHHHcC
Q 015504 312 VLLLNGFVGSVLSD-YFWALSVVWTTPLVATLGMSLTMP-LAMVADMVIHG 360 (405)
Q Consensus 312 ~il~~g~~~t~l~~-~l~~~~~~~~~~~~~sv~~~l~~~-~a~i~~~i~~g 360 (405)
.++..+++.++++| ..=..-+.+++...+++.-..-.- ...+.+..+.+
T Consensus 32 ~~l~~sl~ltvvaY~iGDl~ILPr~gN~~AtiaD~~La~~~iW~~~~~~~~ 82 (136)
T PF10710_consen 32 DILLISLVLTVVAYLIGDLFILPRTGNIVATIADFGLAFLVIWLMGYILTG 82 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeCCCChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555567777 555566777888888776544222 24444555545
No 142
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=21.26 E-value=5.1e+02 Score=21.89 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=37.2
Q ss_pred HHHHHHHhhchHHHHHHhhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCch
Q 015504 327 FWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDK 386 (405)
Q Consensus 327 l~~~~~~~~~~~~~sv~~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~ 386 (405)
.....+++.+..+-+++... +++.....+.|+ .+..++.|+.++..=+.++..|+.
T Consensus 64 ~~~~lm~~kgi~rm~lG~~v---m~~~~~llw~gg-v~~~~IAg~~lv~filmvVLiPEp 119 (144)
T PF01350_consen 64 VFWFLMRRKGIGRMSLGMLV---MAVAGYLLWMGG-VPPGQIAGVLLVFFILMVVLIPEP 119 (144)
T ss_pred HHHhhhcCCCcchhhHHHHH---HHHHHHHHHhcC-CcHHHhHHHHHHHHHHHHhcccCC
Confidence 33455677777787766433 233233333444 888999999999988888888764
No 143
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=20.93 E-value=1.1e+03 Score=25.71 Aligned_cols=261 Identities=6% Similarity=-0.124 Sum_probs=0.0
Q ss_pred HHHhhhhhhhcccccCCCcccCCCCCCCCcccccccccchhhhhhcccc---cCcCcCccccCCcccccCCCCCcchhhc
Q 015504 59 CFCSLLDKNIFKNLFGNRSLTSTSTGLDIPLKSNELNNSLETDLRSSLM---MDKDLSEREEGWPLIAKSDKDEPHVLEQ 135 (405)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (405)
+...-+.+|..++-.++++.++-..+...-...++.+.+.|.|-.+.-. +++|..-..|.+-.+....+.+++....
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (742)
T TIGR01299 36 RAQDEYSQRSYSRFEDEDDDDDFPAPADGYSRGEAADDEEEGEASSDATEGHDEDDEIYEGEYQGIPRAENGGKDEIMAD 115 (742)
T ss_pred HhhHHHhhhhHhhhcccccccCCCCCCCCCCCccccccccccccccccccCCCccchhhhcccCCCCCCcccchhhHhhc
Q ss_pred ccCCC-----------------------------------------HHHHHHHHHHHHHHHHHHHH---------HHHHH
Q 015504 136 RSELS-----------------------------------------SWAIAKCSLYLTPIWFITEY---------FSNSA 165 (405)
Q Consensus 136 ~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~---------~~~~a 165 (405)
..+.. .+....+.+..++.++...+ -....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~ 195 (742)
T TIGR01299 116 GAPKAGVRDELKDGEGPPGGEGEAERRADEEELAQQYELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEK 195 (742)
T ss_pred cCcccccccccccccCCCcccchhhhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhccchhhHHHHhhhhHHHHHHHHHHh--ccccchHHHHH--HHHHhhhceEEEEecCCCccccccccccccccchhhHH
Q 015504 166 LANTSVASTTVLTSTSGLFTLFFGALL--GQDSITIAKLV--AVFISMAGVAMTTVGKTWAADEFLSASESRRHNITGDI 241 (405)
Q Consensus 166 l~~~s~~~~~~l~~~~pv~~~ils~l~--~~er~~~~~~~--~i~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~G~~ 241 (405)
-...+....+.+.+...+..++.+.+. +-+|+.+++.+ +.++..+|.++..+..+ ...-...-.+
T Consensus 196 ~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s-----------~~~llv~R~l 264 (742)
T TIGR01299 196 DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQG-----------YGFFLFCRLL 264 (742)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhh-----------HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCchhHHHHHHHHHHHHH
Q 015504 242 FGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLLLNGFVGS 321 (405)
Q Consensus 242 l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~il~~g~~~t 321 (405)
.++..+..+.....+.....++............+..+..++..+.........|+............|-.+.+.+.+..
T Consensus 265 ~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ 344 (742)
T TIGR01299 265 SGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPC 344 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 015504 322 VLSDYFWAL 330 (405)
Q Consensus 322 ~l~~~l~~~ 330 (405)
++...++..
T Consensus 345 ll~ll~~~~ 353 (742)
T TIGR01299 345 VFAIGALTF 353 (742)
T ss_pred HHHHHHHHH
No 144
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=20.77 E-value=5.9e+02 Score=22.48 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=17.9
Q ss_pred cccchHHHHHHHHHhhhceEEEEec
Q 015504 194 QDSITIAKLVAVFISMAGVAMTTVG 218 (405)
Q Consensus 194 ~er~~~~~~~~i~l~~~Gv~ll~~~ 218 (405)
+++-......|+++.+.|++.+..+
T Consensus 16 ~~~w~~~l~~Gv~lii~Gl~~l~~P 40 (185)
T COG3247 16 KKPWWWVLLLGVLLIILGLLALFNP 40 (185)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHhH
Confidence 4455566777888888888887654
No 145
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=20.68 E-value=8.3e+02 Score=24.18 Aligned_cols=74 Identities=12% Similarity=0.112 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhhhHHHHHHHHHHhccccchH--HHHHHHHHhhhceEE
Q 015504 141 SWAIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITI--AKLVAVFISMAGVAM 214 (405)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~~pv~~~ils~l~~~er~~~--~~~~~i~l~~~Gv~l 214 (405)
.++++.......++...+-+....+-.+.+...++.-.........+++++..|++.+. ..++++++...++.+
T Consensus 128 ~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p~~~~~~~~~I~~Ai~~G~~~y~~~~~~~~~t~i~vvll~~~v~~ 203 (376)
T PF02554_consen 128 AKKLFLIFIFFLLILVIAVFADVVANTFVNSPWAATSSLLFIPIAILFGLLVYKRGGNLGPATIIGVVLLLLAVWL 203 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHhHhheecCCchHhhHHHHHHHHHHHHHh
Confidence 33444444444444444554445555555544555555566677778888776776654 466677776666555
No 146
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.27 E-value=97 Score=24.23 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=24.9
Q ss_pred HHHHHHhccccchHHHHHHHHHhhhceEEE
Q 015504 186 LFFGALLGQDSITIAKLVAVFISMAGVAMT 215 (405)
Q Consensus 186 ~ils~l~~~er~~~~~~~~i~l~~~Gv~ll 215 (405)
..++.+.+||++.+..+.|-.+...|+.++
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 456778899999999999998888887665
No 147
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=20.21 E-value=2e+02 Score=18.86 Aligned_cols=8 Identities=25% Similarity=0.268 Sum_probs=3.8
Q ss_pred HHHHHhhc
Q 015504 376 AGFIIANL 383 (405)
Q Consensus 376 ~g~~l~~~ 383 (405)
.|+.+++.
T Consensus 21 iGl~IyQk 28 (49)
T PF11044_consen 21 IGLSIYQK 28 (49)
T ss_pred HHHHHHHH
Confidence 34455554
Done!