Query 015504
Match_columns 405
No_of_seqs 243 out of 2194
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 13:46:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015504.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015504hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.8 5.2E-09 1.8E-13 86.6 6.5 71 316-386 35-106 (137)
2 3b5d_A Multidrug transporter E 98.3 2.4E-06 8.1E-11 68.0 9.4 70 316-385 35-105 (110)
3 3b5d_A Multidrug transporter E 98.2 1.7E-06 5.8E-11 68.9 6.5 71 149-219 34-105 (110)
4 2i68_A Protein EMRE; transmemb 98.2 8.2E-07 2.8E-11 73.3 3.7 71 149-219 34-105 (137)
5 2knc_A Integrin alpha-IIB; tra 18.9 61 0.0021 21.4 2.0 35 35-69 10-44 (54)
6 3hd6_A Ammonium transporter RH 16.4 7.4E+02 0.025 24.1 11.8 126 145-284 223-359 (490)
7 2l8s_A Integrin alpha-1; trans 13.3 78 0.0027 20.9 1.4 29 41-69 13-41 (54)
8 2l2t_A Receptor tyrosine-prote 11.9 1E+02 0.0034 19.4 1.5 15 372-386 24-38 (44)
9 2rdd_B UPF0092 membrane protei 11.0 1.7E+02 0.006 17.3 2.4 10 373-382 11-20 (37)
10 3o7q_A L-fucose-proton symport 10.6 8.8E+02 0.03 21.8 8.7 137 134-283 17-164 (438)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.82 E-value=5.2e-09 Score=86.60 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHH-hhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCch
Q 015504 316 NGFVGSVLSDYFWALSVVWTTPLVATLG-MSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDK 386 (405)
Q Consensus 316 ~g~~~t~l~~~l~~~~~~~~~~~~~sv~-~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~~ 386 (405)
.+++++++++++|..++++.++..+... ..+.|+++++++++++||++++.+++|+++|++|+++.+..++
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~ 106 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566789999999999999999999877 7898999999999999999999999999999999999987654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.34 E-value=2.4e-06 Score=68.00 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHH-hhchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHhhcCc
Q 015504 316 NGFVGSVLSDYFWALSVVWTTPLVATLG-MSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSD 385 (405)
Q Consensus 316 ~g~~~t~l~~~l~~~~~~~~~~~~~sv~-~~l~~~~a~i~~~i~~ge~~~~~~iiG~~lI~~g~~l~~~~~ 385 (405)
.++++.+++++++..++|+.+...+... ..+.+.++++.+++++||+++..+++|..+|++|+++.+..+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4456688999999999999999999766 788888999999999999999999999999999999998754
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.24 E-value=1.7e-06 Score=68.85 Aligned_cols=71 Identities=7% Similarity=0.096 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhHHHH-hhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecC
Q 015504 149 LYLTPIWFITEYFSNSALANTSVASTTVL-TSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGK 219 (405)
Q Consensus 149 ~~~~~~~~~~~~~~~~al~~~s~~~~~~l-~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~ 219 (405)
+.+..++.++.+++..++++.+.+.+-.+ .++.|+++.++++++++|+++..+++|+.+.++|++++...+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34455677788899999999999999888 799999999999999999999999999999999999987643
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.19 E-value=8.2e-07 Score=73.35 Aligned_cols=71 Identities=7% Similarity=0.096 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhHHHH-hhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecC
Q 015504 149 LYLTPIWFITEYFSNSALANTSVASTTVL-TSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGK 219 (405)
Q Consensus 149 ~~~~~~~~~~~~~~~~al~~~s~~~~~~l-~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~ 219 (405)
+.+.+.+.++.++++.++++.+++.+..+ .++.|+++.++++++++|++++.+++|+++.++|++++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44455677788999999999999999888 899999999999999999999999999999999999987543
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=18.95 E-value=61 Score=21.43 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=18.6
Q ss_pred CcEeeheecchhhHHHHHHHHHHHHHHhhhhhhhc
Q 015504 35 QPFALTYLGVSLMVIYLPVALLRDCFCSLLDKNIF 69 (405)
Q Consensus 35 ~P~~~t~~~~~~~~l~lp~~~~~~~~~~~~~~~~~ 69 (405)
-|+-+......++.+++.+.....|.+..+||++.
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 34444444455555555444444566677776653
No 6
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=16.43 E-value=7.4e+02 Score=24.12 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhh------hHHHHHHHHHHh-ccccchHHHHHHHHHhhhceEEEEe
Q 015504 145 AKCSLYLTPIWFITEYFSNSALANTSVASTTVLTST------SGLFTLFFGALL-GQDSITIAKLVAVFISMAGVAMTTV 217 (405)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~al~~~s~~~~~~l~~~------~pv~~~ils~l~-~~er~~~~~~~~i~l~~~Gv~ll~~ 217 (405)
.....+|..+.-+.++.|+-|....+......+.+| ..+-..++++++ .+.|++.....-- +++|.+-++-
T Consensus 223 ~~~a~LGt~lLW~GWfGFN~gs~~~~~~~~~a~~NT~lAaAag~lt~~~~s~l~~~~gK~s~~~~~nG--~LAGLVAIT~ 300 (490)
T 3hd6_A 223 DLFAMIGTLFLWMYWPSFNSAISYHGDSQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNA--TLAGGVAVGT 300 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCHHHHHHG--GGHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhhchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhhc--eeeeEEEEcc
Confidence 345555555444578888877654222222222222 222334444443 3456766443322 2344444432
Q ss_pred cCCCccccccccccccccchhhHHHHHHHHHHH-HHHH---HHHHhhcCCCCCcchHHHHHHHHHHHHHHH
Q 015504 218 GKTWAADEFLSASESRRHNITGDIFGLLSAITY-GLFT---VLLKKSAGSEGDKVDVQKFFGYIGLFTFLG 284 (405)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~G~~l~l~sa~~~-a~y~---v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (405)
..+ ..-..+...+..+++++.. ..+. ...|+..+ .++.......-+..|+++.+.
T Consensus 301 ~a~-----------~~v~P~~AliIG~iaG~i~~~~~~~l~~~l~~kl~-iDD~lgv~~vHGv~Gi~G~l~ 359 (490)
T 3hd6_A 301 AAE-----------MMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLH-IQDTCGINNLHGIPGIIGGIV 359 (490)
T ss_dssp TTT-----------TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCTTCHHHHTHHHHHHHHHH
T ss_pred Ccc-----------cccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHCC-CCccccchHHhhHHHHHHHHH
Confidence 111 0011233344444444332 2222 22333333 355566666666667766653
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=13.33 E-value=78 Score=20.91 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=15.5
Q ss_pred eecchhhHHHHHHHHHHHHHHhhhhhhhc
Q 015504 41 YLGVSLMVIYLPVALLRDCFCSLLDKNIF 69 (405)
Q Consensus 41 ~~~~~~~~l~lp~~~~~~~~~~~~~~~~~ 69 (405)
.....++.+++.+.....|.+..+||+++
T Consensus 13 i~svl~GLLLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 13 LLSAFAGLLLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccCCCc
Confidence 34444555555444444566677776543
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=11.87 E-value=1e+02 Score=19.44 Aligned_cols=15 Identities=13% Similarity=-0.022 Sum_probs=6.3
Q ss_pred HHHHHHHHHhhcCch
Q 015504 372 LQVFAGFIIANLSDK 386 (405)
Q Consensus 372 ~lI~~g~~l~~~~~~ 386 (405)
+++.++..++.+.++
T Consensus 24 ~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 24 VIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhh
Confidence 334444444444333
No 9
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=10.96 E-value=1.7e+02 Score=17.31 Aligned_cols=10 Identities=10% Similarity=-0.280 Sum_probs=3.9
Q ss_pred HHHHHHHHhh
Q 015504 373 QVFAGFIIAN 382 (405)
Q Consensus 373 lI~~g~~l~~ 382 (405)
++++.++...
T Consensus 11 ~~~~ifYFl~ 20 (37)
T 2rdd_B 11 VFGLIFYFMI 20 (37)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 3334443333
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=10.60 E-value=8.8e+02 Score=21.81 Aligned_cols=137 Identities=7% Similarity=-0.057 Sum_probs=0.0
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------chhhHHHHhhhhHHHHHHHHHHh--ccccchHHHHHHH
Q 015504 134 EQRSELSSWAIAKCSLYLTPIWFITEYFSNSALANT------SVASTTVLTSTSGLFTLFFGALL--GQDSITIAKLVAV 205 (405)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~------s~~~~~~l~~~~pv~~~ils~l~--~~er~~~~~~~~i 205 (405)
+...+...+..+.......+++..........+... +....+.+.+...+...+.+.+. +-||+.+++.+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~ 96 (438)
T 3o7q_A 17 DAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT 96 (438)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHH
T ss_pred cchhhhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHH
Q ss_pred HHhhhceEEEEe---cCCCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH
Q 015504 206 FISMAGVAMTTV---GKTWAADEFLSASESRRHNITGDIFGLLSAITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTF 282 (405)
Q Consensus 206 ~l~~~Gv~ll~~---~~~~~~~~~~~~~~~~~~~~~G~~l~l~sa~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~ 282 (405)
...+.++..+.. .-. .+...=.+.-++.+++.+........+..+..++..-...++.......
T Consensus 97 ~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 163 (438)
T 3o7q_A 97 GLFLYALGAALFWPAAEI-------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_dssp HHHHHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccc-------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHH
Q ss_pred H
Q 015504 283 L 283 (405)
Q Consensus 283 ~ 283 (405)
+
T Consensus 164 ~ 164 (438)
T 3o7q_A 164 F 164 (438)
T ss_dssp H
T ss_pred H
Done!