Query 015504
Match_columns 405
No_of_seqs 243 out of 2194
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 13:47:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015504.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015504hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 27.2 1.9E+02 0.014 25.1 13.2 121 148-284 199-326 (383)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 25.0 35 0.0025 17.2 2.7 18 237-254 2-19 (27)
3 d1iwga8 f.35.1.1 (A:513-566,A: 14.7 2.3E+02 0.017 22.0 7.6 39 338-376 81-122 (222)
4 d1pv7a_ f.38.1.2 (A:) Lactose 13.4 3E+02 0.022 21.9 10.2 22 22-43 27-49 (417)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 8.0 5.1E+02 0.037 21.0 22.7 12 170-181 283-294 (447)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 7.4 5.4E+02 0.039 20.8 16.7 10 327-336 364-373 (447)
7 d1pv7a_ f.38.1.2 (A:) Lactose 7.1 5.2E+02 0.038 20.3 10.4 21 194-214 283-303 (417)
8 d1iwga7 f.35.1.1 (A:7-37,A:331 4.7 6.3E+02 0.046 18.7 6.7 29 351-379 79-107 (199)
9 d1uptb_ a.193.1.1 (B:) Golgi a 4.1 2.4E+02 0.018 17.1 2.0 22 186-207 11-32 (58)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 3.1 4.3E+02 0.031 14.1 3.0 20 235-254 16-35 (37)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=27.17 E-value=1.9e+02 Score=25.06 Aligned_cols=121 Identities=18% Similarity=0.121 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhhH------HHHhhhhHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecCCC
Q 015504 148 SLYLTPIWFITEYFSNSALANTSVAST------TVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTW 221 (405)
Q Consensus 148 ~~~~~~~~~~~~~~~~~al~~~s~~~~------~~l~~~~pv~~~ils~l~~~er~~~~~~~~i~l~~~Gv~ll~~~~~~ 221 (405)
..++.++.-..++.++-+-.......+ +.+....-.++.++...+.++|++.....--. ++|.+-++-..+
T Consensus 199 ~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG~--LaGLVaita~~~- 275 (383)
T d1u7ga_ 199 VFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGA--IAGLVGVTPACG- 275 (383)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHH--HHHHHHHTTTTT-
T ss_pred hhHHHHHHHHHHHHhccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHh--hhhhhhcccCcc-
Confidence 344444444567777777665433222 22222223333333333456677765544222 234443332111
Q ss_pred ccccccccccccccchhhHHHHHHHH-HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHH
Q 015504 222 AADEFLSASESRRHNITGDIFGLLSA-ITYGLFTVLLKKSAGSEGDKVDVQKFFGYIGLFTFLG 284 (405)
Q Consensus 222 ~~~~~~~~~~~~~~~~~G~~l~l~sa-~~~a~y~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (405)
.-..+...+...+++ +++-.+..+.+|+. .++..+....=+..|+++.+.
T Consensus 276 -----------~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~--iDD~~~~~~vHg~~Gi~G~l~ 326 (383)
T d1u7ga_ 276 -----------YIGVGGALIIGVVAGLAGLWGVTMLKRLLR--VDDPCDVFGVHGVCGIVGCIM 326 (383)
T ss_dssp -----------TSCHHHHHHHHHHHHHHHHHHHHHHHHHHC--SCCGGGHHHHHHHHHHHHHHH
T ss_pred -----------ccchhhHHHHHhhccHHHHHHHHHHHhhcc--cccccceEeehhhhHHHHHHH
Confidence 111222344444444 33444444444443 345566666666667776654
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=25.05 E-value=35 Score=17.17 Aligned_cols=18 Identities=22% Similarity=0.582 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 015504 237 ITGDIFGLLSAITYGLFT 254 (405)
Q Consensus 237 ~~G~~l~l~sa~~~a~y~ 254 (405)
.+|.+.+-++.+.||.|.
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 368888888999998875
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=14.66 E-value=2.3e+02 Score=22.00 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=25.6
Q ss_pred HHHHHHhhchHHHHH---HHHHHHcCCCccHHHHHHHHHHHH
Q 015504 338 LVATLGMSLTMPLAM---VADMVIHGRHYSAIYIFGCLQVFA 376 (405)
Q Consensus 338 ~~~sv~~~l~~~~a~---i~~~i~~ge~~~~~~iiG~~lI~~ 376 (405)
...++...+..|++. +....+.|.+++....+|.++.+.
T Consensus 81 ~~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 81 WSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp SSHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchhh
Confidence 344444555666644 455667799999999888776543
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=13.38 E-value=3e+02 Score=21.91 Aligned_cols=22 Identities=0% Similarity=-0.364 Sum_probs=11.2
Q ss_pred HHHHHHHHHhc-CCCcEeeheec
Q 015504 22 SAEITQKIFTE-YRQPFALTYLG 43 (405)
Q Consensus 22 ~~~l~q~i~~~-~~~P~~~t~~~ 43 (405)
...+..++.++ ..++.-..++.
T Consensus 27 ~~~l~~~l~~~~g~s~~~~g~i~ 49 (417)
T d1pv7a_ 27 FPFFPIWLHDINHISKSDTGIIF 49 (417)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHH
Confidence 34555555554 44555554444
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=7.98 E-value=5.1e+02 Score=20.99 Aligned_cols=12 Identities=0% Similarity=-0.164 Sum_probs=5.2
Q ss_pred chhhHHHHhhhh
Q 015504 170 SVASTTVLTSTS 181 (405)
Q Consensus 170 s~~~~~~l~~~~ 181 (405)
+...++.+....
T Consensus 283 ~~~~~~~~~~~~ 294 (447)
T d1pw4a_ 283 ALDKSSWAYFLY 294 (447)
T ss_dssp CHHHHHHHHHHH
T ss_pred ccchhhhhhhcc
Confidence 444444444433
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=7.44 E-value=5.4e+02 Score=20.82 Aligned_cols=10 Identities=0% Similarity=-0.167 Sum_probs=4.0
Q ss_pred HHHHHHHhhc
Q 015504 327 FWALSVVWTT 336 (405)
Q Consensus 327 l~~~~~~~~~ 336 (405)
.+.......+
T Consensus 364 ~~~~~~~~~p 373 (447)
T d1pw4a_ 364 IGLHALELAP 373 (447)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHHHcC
Confidence 3344444333
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=7.06 E-value=5.2e+02 Score=20.26 Aligned_cols=21 Identities=10% Similarity=0.039 Sum_probs=10.4
Q ss_pred cccchHHHHHHHHHhhhceEE
Q 015504 194 QDSITIAKLVAVFISMAGVAM 214 (405)
Q Consensus 194 ~er~~~~~~~~i~l~~~Gv~l 214 (405)
.+|...++.+.+...+.++..
T Consensus 283 ~~r~~~~~~~~~~~~~~~~~~ 303 (417)
T d1pv7a_ 283 INRIGGKNALLLAGTIMSVRI 303 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHH
T ss_pred hcccccccchhhhHHHHHHhh
Confidence 355555555544444444433
No 8
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.71 E-value=6.3e+02 Score=18.71 Aligned_cols=29 Identities=14% Similarity=0.278 Sum_probs=18.2
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHHHH
Q 015504 351 AMVADMVIHGRHYSAIYIFGCLQVFAGFI 379 (405)
Q Consensus 351 a~i~~~i~~ge~~~~~~iiG~~lI~~g~~ 379 (405)
.......++|.+++.....+..+++...+
T Consensus 79 ~~~~~m~~~g~~l~~~s~~~~~i~igi~v 107 (199)
T d1iwga7 79 GTFAVLAAFGFSINTLTMFGMVLAIGLLV 107 (199)
T ss_dssp HHHHHHHTTTCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHhc
Confidence 33444556788888877777666554433
No 9
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.07 E-value=2.4e+02 Score=17.10 Aligned_cols=22 Identities=23% Similarity=0.646 Sum_probs=16.7
Q ss_pred HHHHHHhccccchHHHHHHHHH
Q 015504 186 LFFGALLGQDSITIAKLVAVFI 207 (405)
Q Consensus 186 ~ils~l~~~er~~~~~~~~i~l 207 (405)
.++-+...+|..+..|+++.++
T Consensus 11 vLfeYMmG~E~~tlaKVi~av~ 32 (58)
T d1uptb_ 11 VLFEYMMGRETKTMAKVITTVL 32 (58)
T ss_dssp HHHHHHTTSSHHHHHHHHHHHT
T ss_pred HHHHHHcCcchhHHHHHHHHHH
Confidence 3556667888888888888764
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.10 E-value=4.3e+02 Score=14.12 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=16.2
Q ss_pred cchhhHHHHHHHHHHHHHHH
Q 015504 235 HNITGDIFGLLSAITYGLFT 254 (405)
Q Consensus 235 ~~~~G~~l~l~sa~~~a~y~ 254 (405)
...+|.++.+.-++.++-|.
T Consensus 16 sLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 45689999999888888775
Done!