Query 015506
Match_columns 405
No_of_seqs 123 out of 168
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:57:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2417 Predicted G-protein co 100.0 4E-119 1E-123 872.4 28.0 395 6-404 68-462 (462)
2 PF12430 ABA_GPCR: Abscisic ac 100.0 5.1E-55 1.1E-59 406.9 19.1 179 219-397 1-196 (196)
3 PF12537 DUF3735: Protein of u 99.9 1.6E-25 3.5E-30 176.8 5.6 71 78-148 1-72 (72)
4 PF04791 LMBR1: LMBR1-like mem 97.1 0.048 1E-06 57.2 20.1 107 9-117 75-192 (471)
5 PRK11546 zraP zinc resistance 91.8 1.8 4E-05 38.7 9.9 34 185-221 86-119 (143)
6 KOG3231 Predicted assembly/vac 61.8 61 0.0013 29.9 8.6 40 116-155 3-42 (208)
7 KOG2019 Metalloendoprotease HM 59.4 45 0.00098 37.4 8.7 61 100-160 353-425 (998)
8 PF05508 Ran-binding: RanGTP-b 58.9 55 0.0012 32.9 8.7 52 83-135 1-56 (302)
9 PF05082 Rop-like: Rop-like; 57.3 24 0.00051 27.6 4.6 29 188-216 2-30 (66)
10 PF04156 IncA: IncA protein; 55.3 1.6E+02 0.0035 26.8 10.8 18 125-142 82-99 (191)
11 PRK10803 tol-pal system protei 55.0 1.1E+02 0.0025 29.8 10.2 28 189-216 76-103 (263)
12 PRK12907 secY preprotein trans 53.9 46 0.001 35.2 7.6 45 64-108 341-386 (434)
13 PRK11637 AmiB activator; Provi 53.5 1.4E+02 0.0029 31.2 11.1 31 123-153 46-76 (428)
14 KOG0250 DNA repair protein RAD 50.3 1.2E+02 0.0027 35.4 10.6 47 186-232 399-446 (1074)
15 PRK12417 secY preprotein trans 49.2 76 0.0017 33.2 8.3 90 18-107 240-357 (404)
16 KOG0709 CREB/ATF family transc 48.5 72 0.0016 33.9 7.9 49 191-239 289-337 (472)
17 PF03350 UPF0114: Uncharacteri 48.0 1.4E+02 0.0031 25.8 8.6 63 285-347 4-71 (124)
18 PF13801 Metal_resist: Heavy-m 47.8 1.5E+02 0.0032 24.0 9.0 34 120-153 41-74 (125)
19 PF08317 Spc7: Spc7 kinetochor 47.7 1.5E+02 0.0032 29.9 9.9 32 123-154 208-239 (325)
20 COG3074 Uncharacterized protei 46.0 64 0.0014 25.6 5.3 32 187-218 17-48 (79)
21 PF04123 DUF373: Domain of unk 45.6 2.2E+02 0.0048 29.2 10.8 149 214-386 149-309 (344)
22 PRK09343 prefoldin subunit bet 45.5 1.9E+02 0.0042 24.9 9.0 57 168-224 54-114 (121)
23 PF07106 TBPIP: Tat binding pr 45.2 2.3E+02 0.005 25.5 9.9 23 185-207 113-135 (169)
24 PRK09039 hypothetical protein; 44.3 2.2E+02 0.0047 29.1 10.6 24 328-353 285-308 (343)
25 cd00632 Prefoldin_beta Prefold 41.0 2.1E+02 0.0045 23.7 10.1 34 187-220 69-102 (105)
26 TIGR00967 3a0501s007 preprotei 40.0 1.1E+02 0.0025 31.8 8.0 44 66-109 327-371 (410)
27 TIGR02338 gimC_beta prefoldin, 39.2 2.3E+02 0.005 23.7 10.8 53 168-220 50-106 (110)
28 TIGR00985 3a0801s04tom mitocho 38.5 14 0.00031 33.3 0.9 31 225-265 6-36 (148)
29 PF14077 WD40_alt: Alternative 38.5 39 0.00084 24.6 2.9 25 185-209 15-39 (48)
30 PF14723 SSFA2_C: Sperm-specif 38.0 3.1E+02 0.0066 25.6 9.3 27 194-220 144-170 (179)
31 PF06005 DUF904: Protein of un 35.4 1.3E+02 0.0029 23.7 5.8 29 187-215 17-45 (72)
32 PF06166 DUF979: Protein of un 35.3 1.5E+02 0.0032 30.0 7.4 46 49-110 27-72 (308)
33 PF00344 SecY: SecY translocas 33.9 1.5E+02 0.0032 30.1 7.5 92 18-109 199-320 (346)
34 CHL00161 secY preprotein trans 33.9 1.6E+02 0.0034 30.9 7.8 94 18-111 256-375 (417)
35 TIGR02920 acc_sec_Y2 accessory 32.8 2.2E+02 0.0048 29.6 8.7 45 64-108 306-351 (395)
36 PRK09204 secY preprotein trans 32.8 1.6E+02 0.0035 31.0 7.7 45 63-107 338-383 (426)
37 KOG0971 Microtubule-associated 32.0 3E+02 0.0065 32.0 9.7 34 191-224 1095-1128(1243)
38 PF00170 bZIP_1: bZIP transcri 31.1 1.6E+02 0.0035 22.1 5.6 35 187-221 25-59 (64)
39 PRK15422 septal ring assembly 30.9 1.7E+02 0.0037 23.7 5.8 27 187-213 17-43 (79)
40 PF11932 DUF3450: Protein of u 29.8 5.1E+02 0.011 24.8 12.7 34 187-220 83-116 (251)
41 COG1704 LemA Uncharacterized c 28.8 3E+02 0.0065 25.9 7.8 30 188-217 118-150 (185)
42 smart00787 Spc7 Spc7 kinetocho 28.6 4.6E+02 0.01 26.4 9.9 34 122-155 202-235 (312)
43 PF14389 Lzipper-MIP1: Leucine 28.4 3.3E+02 0.0071 22.2 7.6 26 186-211 59-84 (88)
44 COG4942 Membrane-bound metallo 28.2 5.9E+02 0.013 27.0 10.7 28 188-215 161-188 (420)
45 COG1579 Zn-ribbon protein, pos 28.0 5.8E+02 0.012 24.9 10.6 38 185-222 86-123 (239)
46 PRK10884 SH3 domain-containing 27.2 5.4E+02 0.012 24.4 10.3 91 123-241 99-189 (206)
47 PF05600 DUF773: Protein of un 27.2 2.5E+02 0.0055 30.3 8.2 49 187-236 459-507 (507)
48 PF14854 LURAP: Leucine rich a 27.1 2E+02 0.0042 25.1 5.9 40 184-223 18-57 (121)
49 PF12507 HCMV_UL139: Human Cyt 26.7 57 0.0012 28.4 2.6 46 189-234 45-90 (121)
50 KOG0483 Transcription factor H 26.4 1.8E+02 0.0038 27.6 6.1 90 118-223 54-147 (198)
51 PF08232 Striatin: Striatin fa 26.0 1.7E+02 0.0037 25.7 5.6 43 187-229 31-75 (134)
52 PF11570 E2R135: Coiled-coil r 25.9 4.7E+02 0.01 23.2 10.0 34 123-156 21-54 (136)
53 PF09753 Use1: Membrane fusion 25.9 1.5E+02 0.0033 28.6 5.8 30 192-221 189-218 (251)
54 COG0201 SecY Preprotein transl 25.8 2.6E+02 0.0057 29.7 7.8 88 18-105 269-386 (436)
55 PF05377 FlaC_arch: Flagella a 25.6 2.1E+02 0.0045 21.6 5.1 33 190-222 2-34 (55)
56 PF04111 APG6: Autophagy prote 25.3 7.1E+02 0.015 25.0 11.1 28 188-215 78-105 (314)
57 PF13314 DUF4083: Domain of un 25.1 1.2E+02 0.0027 23.0 3.8 46 84-140 4-55 (58)
58 KOG0994 Extracellular matrix g 24.9 4.1E+02 0.0089 31.9 9.4 75 119-215 1220-1294(1758)
59 COG4942 Membrane-bound metallo 24.8 7.1E+02 0.015 26.4 10.6 11 94-104 15-25 (420)
60 PF08657 DASH_Spc34: DASH comp 24.6 4.4E+02 0.0096 25.9 8.7 77 124-206 180-257 (259)
61 PRK15396 murein lipoprotein; P 24.6 2.6E+02 0.0057 22.5 5.8 30 124-153 32-61 (78)
62 PF01920 Prefoldin_2: Prefoldi 24.1 3.8E+02 0.0083 21.5 10.5 33 187-219 68-100 (106)
63 PF10779 XhlA: Haemolysin XhlA 23.6 2.8E+02 0.006 21.5 5.8 37 194-230 19-55 (71)
64 PF02064 MAS20: MAS20 protein 22.8 28 0.00061 30.3 0.0 22 234-265 5-26 (121)
65 PRK15422 septal ring assembly 22.8 4.2E+02 0.009 21.5 8.6 26 126-151 6-31 (79)
66 COG3817 Predicted membrane pro 22.3 3.4E+02 0.0074 27.0 7.2 44 50-109 32-75 (313)
67 PRK08568 preprotein translocas 22.1 4.1E+02 0.0089 28.3 8.5 42 66-107 377-420 (462)
68 TIGR03545 conserved hypothetic 21.7 5.1E+02 0.011 28.4 9.3 36 187-222 218-257 (555)
69 PRK10361 DNA recombination pro 21.6 5.2E+02 0.011 27.8 9.1 59 187-245 164-225 (475)
70 PRK09973 putative outer membra 21.6 3.2E+02 0.0069 22.4 5.9 51 93-154 8-61 (85)
71 KOG3722 Lipocalin-interacting 21.5 1E+03 0.022 25.4 10.8 87 289-385 399-493 (538)
72 PF02646 RmuC: RmuC family; I 21.4 3.5E+02 0.0075 27.0 7.5 59 188-247 31-95 (304)
73 KOG1937 Uncharacterized conser 21.3 6.5E+02 0.014 27.0 9.4 36 188-223 352-387 (521)
74 KOG2577 Transcription factor E 21.2 2.1E+02 0.0045 29.5 5.8 36 186-221 142-177 (354)
75 PF03376 Adeno_E3B: Adenovirus 21.2 2.9E+02 0.0063 21.6 5.2 34 282-315 9-42 (67)
76 PF00846 Hanta_nucleocap: Hant 21.1 9.1E+02 0.02 25.4 10.3 32 125-156 3-34 (428)
77 COG4299 Uncharacterized protei 21.1 1.6E+02 0.0035 29.5 4.8 57 14-70 103-161 (371)
78 PF07438 DUF1514: Protein of u 21.0 2.9E+02 0.0064 21.5 5.2 23 191-213 21-43 (66)
79 COG1382 GimC Prefoldin, chaper 20.7 5.7E+02 0.012 22.3 9.8 38 186-223 75-112 (119)
80 PF12325 TMF_TATA_bd: TATA ele 20.7 2.9E+02 0.0063 24.0 5.9 36 186-221 28-63 (120)
81 smart00338 BRLZ basic region l 20.5 3.2E+02 0.0069 20.5 5.5 33 188-220 26-58 (65)
No 1
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-119 Score=872.37 Aligned_cols=395 Identities=53% Similarity=0.905 Sum_probs=374.7
Q ss_pred cCccchhhhHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcccchhh
Q 015506 6 SGCRARVVNWKVDLFCLILLLVFMLPYYHCYLMLCNSGVRKERAALGAILFLLAFLYAFWRMGIHFPMPSPEKGFFTIPQ 85 (405)
Q Consensus 6 ~~~~~R~~~w~~~l~~Ll~lli~viP~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~f~~~G~~~p~~~~~~~~~~~~~ 85 (405)
+++++|.++|+.++.++++++++++|+|+||+++++.+++++.+.++++.+|.+++|+|||+|||+|+++++||++++||
T Consensus 68 l~~~sr~~~w~~~l~~ill~lv~~ip~Y~~y~ii~~i~v~~k~~~~~s~l~w~~FlYffWkiGdpFPmlSakhGiftieQ 147 (462)
T KOG2417|consen 68 LSPESRMFCWKVCLSLILLTLVFMIPYYHCYLIIRNIGVRRKLALPFTILFWFIFLYFFWKIGDPFPMLSAKHGIFTIEQ 147 (462)
T ss_pred cChHHHHHHHHHhHHHHHHHHHHHHHHHhheeeeecccchHHHHhHHHHHHHHHHHHHHHHhCCCCCCCCcccceeeHHH
Confidence 67899999999999999999999999999999999988777788999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHhhcccccccchhhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhh
Q 015506 86 LVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLFIREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLK 165 (405)
Q Consensus 86 ~lsRvgViGVtlmAiLSGfgaVstPy~~~~~~~r~v~~~di~~~e~~l~~t~~~l~~kk~~l~~~~~~~~~~~~~~~~~~ 165 (405)
.++||||||||+||+||||||||+||+||++|.|||+|.||.++||||.||+||+++||||++.++.+ ++++.++..++
T Consensus 148 liSRvgVIGVTlMAvLSGFGAVN~PYsyms~FiR~Vee~di~~lErrL~qtmdmiisKKkk~a~~~l~-~~~l~~e~~~k 226 (462)
T KOG2417|consen 148 LISRVGVIGVTLMAVLSGFGAVNAPYSYMSYFIRPVEETDIIQLERRLAQTMDMIISKKKKMAMAQLE-EKRLQSEKVQK 226 (462)
T ss_pred HHhhhhhhhhhHHHHHhccCccCCchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988853 22333443455
Q ss_pred hhcchhhhhcceecccCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHhchheehhhhH
Q 015506 166 ARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVY 245 (405)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~s~T~~Gr~~~~~g~~fsiYCvy 245 (405)
.++++.|.++...++.++++.+++|+.+|+|+++||+++||||+|+.||+++++|.++|||++|+++|++||+||+||||
T Consensus 227 ~pSff~r~w~~~~~~~~~~~~~~~i~~lq~EV~~LEeLsrqLFLE~~eLr~~ker~~~SkTfkG~yfN~LG~ffSiYCvw 306 (462)
T KOG2417|consen 227 EPSFFRRFWGMFSSSVQDNTLSSDIKLLQQEVEPLEELSRQLFLELVELRQMKERVAFSKTFKGKYFNVLGHFFSIYCVW 306 (462)
T ss_pred CCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhhhHhHHHHHH
Confidence 77888888874444556677788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCChHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcc
Q 015506 246 KMIKSLQSVVFKEAGSVDPVTMTISIFLQFFDIGINAQLLSQYISLLFIGMLIVMSVRGFLMNVMKFFFAVSRVGSGSSS 325 (405)
Q Consensus 246 KI~~s~in~~f~~~~~~DPit~~L~~~~~~~~~~~d~~~~s~~ISf~L~G~liv~Sir~~L~tl~~~f~~~s~~~s~~~~ 325 (405)
||+++++|++|||.+++||+||.+++.++++|++.|+..|+|||||+|+|+|+++|+||+|.|++||+++.++++++|.
T Consensus 307 Kif~s~inIvFdrvGk~DPVTr~IeI~v~~~gi~~Dv~fwsQyISf~lVG~i~vtSvRGll~tltkf~y~~~~s~ssn~- 385 (462)
T KOG2417|consen 307 KIFMSLINIVFDRVGKVDPVTRGIEITVNYLGIDFDVSFWSQYISFFLVGVIAVTSVRGLLITLTKFFYSISSSKSSNI- 385 (462)
T ss_pred HHHHHHHHHHhhhccCcCCccceeEEEEEEecccchHHHHHHHHHHHhhheeEEeehhhhhhhhhhhhheecccccccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCccccchhhhhhHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 015506 326 NVVLFLSEIMGMYFVSSILLIRKSLAIEYRIIITEVLGGEIQFDFYHRWFDAIFVASAFLSLLLLSAHYTSRQADKHPI 404 (405)
Q Consensus 326 ~ivL~laelmG~Y~iSt~lLiRsnLP~~~~~~i~~~Lg~~l~f~f~~~wFD~iFliSa~~t~~~i~~~~~~~~~~~~~~ 404 (405)
++|+++|+|||||+|+++|||+|+|.|||.++||+|| +++|||||||||.+|++||+.|+++++++||.+++|+|+.
T Consensus 386 -ivl~l~qimgmyf~ssvllirms~p~Eyr~iit~VlG-dlqfnfyhRwfdviFl~Sa~~si~~L~l~~k~~~~~~~a~ 462 (462)
T KOG2417|consen 386 -IVLFLAQIMGMYFVSSVLLIRMSMPAEYRTIITEVLG-DLQFNFYHRWFDVIFLVSALSSILFLYLHHKSRQSDKHAI 462 (462)
T ss_pred -hHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh-hhcchhHHHHHHHHHHHHHHHHHHHHHHHhccccccccCC
Confidence 9999999999999999999999999999999999999 8999999999999999999999999999999999998873
No 2
>PF12430 ABA_GPCR: Abscisic acid G-protein coupled receptor
Probab=100.00 E-value=5.1e-55 Score=406.92 Aligned_cols=179 Identities=46% Similarity=0.778 Sum_probs=172.3
Q ss_pred HHHhccCchhhhHHHHhchheehhhhHHHHHHHHHHHhcc---------------CCCCChHHHHHHHHHhhccccccHH
Q 015506 219 EAAAYSRTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKE---------------AGSVDPVTMTISIFLQFFDIGINAQ 283 (405)
Q Consensus 219 ~r~~~s~T~~Gr~~~~~g~~fsiYCvyKI~~s~in~~f~~---------------~~~~DPit~~L~~~~~~~~~~~d~~ 283 (405)
||+++++|++||+++++||+|++||+|||+++++|+++++ .+++||+|++++++++++++++|++
T Consensus 1 ~r~~~s~T~~G~~~~~~g~~fsiYCvyki~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~Dpit~~l~~~~~~~~~~~d~~ 80 (196)
T PF12430_consen 1 ERQKRSSTLLGRLFNLLGYIFSIYCVYKIINTTLNIIFRRYSYSSSSPDDSSEASFSSSDPITRTLAILLSFFNIPIDVD 80 (196)
T ss_pred ChhhhCccHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCHHHHHHHHHHHhCCCCCCHH
Confidence 5788999999999999999999999999999999999877 7899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhc
Q 015506 284 LLSQYISLLFIGMLIVMSVRGFLMNVMKFFFAVSRVGSGSSSNVVLFLSEIMGMYFVSSILLIRKSLAIEYRIIITEVLG 363 (405)
Q Consensus 284 ~~s~~ISf~L~G~liv~Sir~~L~tl~~~f~~~s~~~s~~~~~ivL~laelmG~Y~iSt~lLiRsnLP~~~~~~i~~~Lg 363 (405)
+|+|||||+|+|+|++||+|+++.|+.++++++++..+.+..+++|++||+||+||+||++|||+|||+|++.+++++||
T Consensus 81 ~~s~~ISf~L~g~l~~~S~r~vl~t~~~~~~~~~~~~~~~~~~~~L~laelmGiY~iSt~lLlRsnLP~~~~~~i~~~Lg 160 (196)
T PF12430_consen 81 SWSRQISFLLSGVLFVTSIRGVLTTFSKFFRALPSSLSLSSNILVLFLAELMGIYFISTVLLLRSNLPPEYSSIITEILG 160 (196)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999998664469999999999999999999999999999999999999
Q ss_pred --CCccccchhhhhhHHHHHHHHHHHHHHHHHHhhc
Q 015506 364 --GEIQFDFYHRWFDAIFVASAFLSLLLLSAHYTSR 397 (405)
Q Consensus 364 --~~l~f~f~~~wFD~iFliSa~~t~~~i~~~~~~~ 397 (405)
+++||+|||+|||.+|++||++|++++|++||+|
T Consensus 161 ~~~~~~~~~~~~wFD~iFl~S~~~T~~~i~~~~~~~ 196 (196)
T PF12430_consen 161 ENSLLEFNFYDRWFDKIFLISAILTAVGIYVAHKHR 196 (196)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999876
No 3
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=99.92 E-value=1.6e-25 Score=176.78 Aligned_cols=71 Identities=51% Similarity=0.880 Sum_probs=68.3
Q ss_pred CcccchhhhhhhhhhhhHHHHHHhhcccccccchhhhhhhhccCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 78 KGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLFIREID-ESEIKALERQLMQSIETCIAKKKKII 148 (405)
Q Consensus 78 ~~~~~~~~~lsRvgViGVtlmAiLSGfgaVstPy~~~~~~~r~v~-~~di~~~e~~l~~t~~~l~~kk~~l~ 148 (405)
||++++|++++||||+|||+||+|||||||||||++|++|+||++ |.||+++|++++||.|++.+||+|++
T Consensus 1 ~~~~~~~~~l~ri~ViGVt~mAiLSG~gaVstpy~~~~~~~~~v~~~~~i~~~~~~l~~t~~~l~~Kk~~l~ 72 (72)
T PF12537_consen 1 HGFFYIENVLSRIGVIGVTLMAILSGFGAVSTPYYYFSYFRRPVSRESDINNAERRLWHTRDMLVEKKKRLA 72 (72)
T ss_pred CceehHHHHHHHHHHHHHHHHHHHhhhhHHccHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 577899999999999999999999999999999999999999999 99999999999999999999998863
No 4
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=97.15 E-value=0.048 Score=57.23 Aligned_cols=107 Identities=17% Similarity=0.254 Sum_probs=60.7
Q ss_pred cchhhhHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-cc--hhH--------HHHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 015506 9 RARVVNWKVDLFCLILLLVFMLPYYHCYLMLCNSGV-RK--ERA--------ALGAILFLLAFLYAFWRMGIHFPMPSPE 77 (405)
Q Consensus 9 ~~R~~~w~~~l~~Ll~lli~viP~~~~~~l~~~~~~-~~--~~~--------~~~~~~~~~~~l~~f~~~G~~~p~~~~~ 77 (405)
+.-...|++.-+...++.-+++||.+.|.=...... .+ +++ .+...+..+.+.+....++. +.....
T Consensus 75 ~~~~~~W~~iyw~~~il~w~ilPf~~~y~es~~~~~~~k~l~~~l~~n~~~~~~~~~i~~~~~~~~~~~~d~--~~~~~~ 152 (471)
T PF04791_consen 75 SLMEVLWYIIYWLTFILTWLILPFAQFYYESGDFTPKGKGLKSSLKENLIYYLIFAIIVGILLIYLLAILDY--SESTLS 152 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHh
Confidence 334557999999999999999999999976533321 12 111 11111122222222222111 000000
Q ss_pred CcccchhhhhhhhhhhhHHHHHHhhcccccccchhhhhhh
Q 015506 78 KGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLF 117 (405)
Q Consensus 78 ~~~~~~~~~lsRvgViGVtlmAiLSGfgaVstPy~~~~~~ 117 (405)
.......=+++=....|..++.++-|+|=|.-|-.....+
T Consensus 153 ~~~~~~~~~ial~~~~Gl~l~i~~~g~Glv~iP~~l~~~~ 192 (471)
T PF04791_consen 153 SFSSLLPFLIALSNFWGLFLFIILLGYGLVAIPRDLWRSS 192 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhc
Confidence 0000112255667789999999999999999999866544
No 5
>PRK11546 zraP zinc resistance protein; Provisional
Probab=91.77 E-value=1.8 Score=38.73 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=24.0
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 185 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 221 (405)
Q Consensus 185 ~~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~ 221 (405)
++.+.|+++.+||..|.. +|+.+=.+++.+.++.
T Consensus 86 pD~~kI~aL~kEI~~Lr~---kL~e~r~~~~~~~~k~ 119 (143)
T PRK11546 86 PDSSKINAVAKEMENLRQ---SLDELRVKRDIAMAEA 119 (143)
T ss_pred CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHc
Confidence 456789999999988775 6666655666555554
No 6
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.77 E-value=61 Score=29.92 Aligned_cols=40 Identities=10% Similarity=0.221 Sum_probs=26.2
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015506 116 LFIREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMD 155 (405)
Q Consensus 116 ~~~r~v~~~di~~~e~~l~~t~~~l~~kk~~l~~~~~~~~ 155 (405)
.|.+|-.+..++...|.|+.|...|...|++++..|++.+
T Consensus 3 iF~Kktvke~~ren~ReLRkt~RdierdRr~me~~Ek~LE 42 (208)
T KOG3231|consen 3 IFKKKTVKEVIRENNRELRKTQRDIERDRRAMEKQEKQLE 42 (208)
T ss_pred cccCCCHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4555644445677778888888888877776655554443
No 7
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=59.40 E-value=45 Score=37.37 Aligned_cols=61 Identities=18% Similarity=0.307 Sum_probs=43.9
Q ss_pred Hhhccc---ccccchhh------hhhhhccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhcc
Q 015506 100 VLAGFG---AVNLPYSY------LSLFIREIDESEIKALERQLMQSIETCIAKK---KKIILCQMEMDRIQGS 160 (405)
Q Consensus 100 iLSGfg---aVstPy~~------~~~~~r~v~~~di~~~e~~l~~t~~~l~~kk---~~l~~~~~~~~~~~~~ 160 (405)
+=||.| +||+-|.- |+.-.+-|+|.||+..|.-.+.|.+.+++++ +|++..-.+++-++..
T Consensus 353 iESGLGtEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae~gfd~drieAil~qiEislk~ 425 (998)
T KOG2019|consen 353 IESGLGTEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAETGFDNDRIEAILHQIEISLKH 425 (998)
T ss_pred HHcCCCcccccCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhhc
Confidence 348888 78887763 3334678999999999999999999998854 4565555555544333
No 8
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=58.93 E-value=55 Score=32.92 Aligned_cols=52 Identities=23% Similarity=0.459 Sum_probs=35.8
Q ss_pred hhhhhhhhhhhhHHHHHHhhcccccc-cchhhhhhhhccCCHHH---HHHHHHHHHH
Q 015506 83 IPQLVSRIGVIGVTVMAVLAGFGAVN-LPYSYLSLFIREIDESE---IKALERQLMQ 135 (405)
Q Consensus 83 ~~~~lsRvgViGVtlmAiLSGfgaVs-tPy~~~~~~~r~v~~~d---i~~~e~~l~~ 135 (405)
|++.|+++|.=-|+. |+=||++=.| +.-.+.+-|.+.+.+.| ++.++++|+.
T Consensus 1 MD~lLak~~~QAvtf-AIRSGIslaS~yAikq~s~~l~~ip~~~~~~l~~lq~~L~~ 56 (302)
T PF05508_consen 1 MDELLAKAGSQAVTF-AIRSGISLASSYAIKQCSRFLKKIPDKDRKELEKLQRRLES 56 (302)
T ss_pred ChHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 467888888777776 9999987443 34456666778888875 5555555553
No 9
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=57.28 E-value=24 Score=27.61 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=26.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 188 QDIKIMEAEVQALEELSKQLFLEIYELRQ 216 (405)
Q Consensus 188 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~ 216 (405)
+++..|+.||.-|.....++-.|||+|-.
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaE 30 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAE 30 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999864
No 10
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=55.33 E-value=1.6e+02 Score=26.77 Aligned_cols=18 Identities=33% Similarity=0.300 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015506 125 EIKALERQLMQSIETCIA 142 (405)
Q Consensus 125 di~~~e~~l~~t~~~l~~ 142 (405)
++...++++.+..+-+.+
T Consensus 82 e~~~~~~~l~~l~~el~~ 99 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQ 99 (191)
T ss_pred hHHhHHHHHHHHHHHHHH
Confidence 444445444444444433
No 11
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=54.99 E-value=1.1e+02 Score=29.82 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 189 DIKIMEAEVQALEELSKQLFLEIYELRQ 216 (405)
Q Consensus 189 ~i~~L~~Ei~~Le~l~~~l~~el~~L~~ 216 (405)
++..++-|++.+.+=.+++|.|+.++..
T Consensus 76 ~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 76 QIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457788889999999999999998654
No 12
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=53.86 E-value=46 Score=35.15 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=37.0
Q ss_pred HHHhCCCCC-CCCCCCcccchhhhhhhhhhhhHHHHHHhhcccccc
Q 015506 64 FWRMGIHFP-MPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVN 108 (405)
Q Consensus 64 f~~~G~~~p-~~~~~~~~~~~~~~lsRvgViGVtlmAiLSGfgaVs 108 (405)
+-|-|.++| +..+++..-++++.++|++++|-..+|++++....-
T Consensus 341 L~k~G~~IPGiRPGk~T~~yL~~~i~rlt~~Gai~L~~ia~lP~i~ 386 (434)
T PRK12907 341 LKKQNGYVPGIRPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVF 386 (434)
T ss_pred HHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 348889999 445577778999999999999999999999875543
No 13
>PRK11637 AmiB activator; Provisional
Probab=53.51 E-value=1.4e+02 Score=31.21 Aligned_cols=31 Identities=3% Similarity=0.159 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 123 ESEIKALERQLMQSIETCIAKKKKIILCQME 153 (405)
Q Consensus 123 ~~di~~~e~~l~~t~~~l~~kk~~l~~~~~~ 153 (405)
+.++.+.++++....+.+.+.++++...+.+
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~ 76 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQ 76 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777766666665544444444433
No 14
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=50.30 E-value=1.2e+02 Score=35.42 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=35.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-chhhhHH
Q 015506 186 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSR-TWRGHMQ 232 (405)
Q Consensus 186 ~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~s~-T~~Gr~~ 232 (405)
-+.++.+|++|++.+|+...+|-.|+.++++...+.+..+ +.+|+..
T Consensus 399 ~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~ 446 (1074)
T KOG0250|consen 399 RENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEIL 446 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3578999999999999999999999999887655554432 3445443
No 15
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=49.15 E-value=76 Score=33.17 Aligned_cols=90 Identities=16% Similarity=0.255 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC-----------Ccc-hhH---HHHHHHHHHHHHH------------HHHHhCCC
Q 015506 18 DLFCLILLLVFMLPYYHCYLMLCNSG-----------VRK-ERA---ALGAILFLLAFLY------------AFWRMGIH 70 (405)
Q Consensus 18 ~l~~Ll~lli~viP~~~~~~l~~~~~-----------~~~-~~~---~~~~~~~~~~~l~------------~f~~~G~~ 70 (405)
..+.+...-++..|..++..+-+..+ +.. +.. .-...+.+..|+| .+-|-|.+
T Consensus 240 vmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~lii~fs~fys~i~~nP~diAe~lkk~g~~ 319 (404)
T PRK12417 240 GMPIMYSMSLLVFPQYIIILILSIFPNNSGISADMDMLSFGSPLGVTVYLILQFLLSYFFSFVNINTKQIAKDMLKSGNY 319 (404)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCc
Confidence 35677777888888887765421110 111 111 1111233344444 34567788
Q ss_pred CC-CCCCCCcccchhhhhhhhhhhhHHHHHHhhccccc
Q 015506 71 FP-MPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAV 107 (405)
Q Consensus 71 ~p-~~~~~~~~~~~~~~lsRvgViGVtlmAiLSGfgaV 107 (405)
+| +.++++..-++++.+.|++.+|-..+|++++.-.+
T Consensus 320 IpGiRPG~~T~~yL~~vi~r~t~~Gai~l~~ia~lP~~ 357 (404)
T PRK12417 320 IPGVYPGKDTERYLNYIARRFSWFGALFVTVIAGIPLY 357 (404)
T ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 44556777789999999999999999999996444
No 16
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=48.49 E-value=72 Score=33.90 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHhchhe
Q 015506 191 KIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYAL 239 (405)
Q Consensus 191 ~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~s~T~~Gr~~~~~g~~f 239 (405)
++|++.++.||.-.+.|+.+|.+++........+.|=.|+-..++.+-|
T Consensus 289 qeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an~s~qt~tC~av~~lS~ 337 (472)
T KOG0709|consen 289 QELQKKVEELELSNRSLLAQLKKLQTLVIQVANKSTQTSTCLAVLLLSF 337 (472)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHH
Confidence 6899999999999999999999999888777777777776555554443
No 17
>PF03350 UPF0114: Uncharacterized protein family, UPF0114; InterPro: IPR005134 This conserved hypothetical protein family with four predicted transmembrane regions is found in Escherichia coli, Haemophilus influenzae, and Helicobacter pylori 26695, among completed genomes.
Probab=48.04 E-value=1.4e+02 Score=25.82 Aligned_cols=63 Identities=24% Similarity=0.382 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-----hccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 015506 285 LSQYISLLFIGMLIVMSVRGFLMNVMKFFFAV-----SRVGSGSSSNVVLFLSEIMGMYFVSSILLIR 347 (405)
Q Consensus 285 ~s~~ISf~L~G~liv~Sir~~L~tl~~~f~~~-----s~~~s~~~~~ivL~laelmG~Y~iSt~lLiR 347 (405)
.+|++.+..+-+++++++-=+......++..+ +...+.+..-+++-+-|+.-+|.++++++|=
T Consensus 4 ~sR~l~~~~vig~l~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vl~~vD~~Lia~vllI~ 71 (124)
T PF03350_consen 4 ASRWLVLPAVIGLLLGSVLLFVKGAVEIFHAFIEVFSAHVFSSDEKDLILGVLELVDLFLIANVLLIF 71 (124)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888887755555544444333 2222222223688888999999999999874
No 18
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=47.80 E-value=1.5e+02 Score=24.00 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 120 EIDESEIKALERQLMQSIETCIAKKKKIILCQME 153 (405)
Q Consensus 120 ~v~~~di~~~e~~l~~t~~~l~~kk~~l~~~~~~ 153 (405)
..|+.+-...++-.....+....-|.++...+.+
T Consensus 41 ~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~ 74 (125)
T PF13801_consen 41 NLTPEQQAKLRALMDEFRQEMRALRQELRAARQE 74 (125)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777776666655555544444444444444433
No 19
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=47.73 E-value=1.5e+02 Score=29.88 Aligned_cols=32 Identities=34% Similarity=0.421 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015506 123 ESEIKALERQLMQSIETCIAKKKKIILCQMEM 154 (405)
Q Consensus 123 ~~di~~~e~~l~~t~~~l~~kk~~l~~~~~~~ 154 (405)
..+++.+...+......+.++|++++.++.+.
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el 239 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEEL 239 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666666666665555443
No 20
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.01 E-value=64 Score=25.57 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=25.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 187 EQDIKIMEAEVQALEELSKQLFLEIYELRQAK 218 (405)
Q Consensus 187 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~ 218 (405)
.+-|.-||+||+.|++=.++|-.|..+++..+
T Consensus 17 vdTI~LLQmEieELKEknn~l~~e~q~~q~~r 48 (79)
T COG3074 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQR 48 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 34578899999999999999988888766433
No 21
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=45.57 E-value=2.2e+02 Score=29.24 Aligned_cols=149 Identities=19% Similarity=0.320 Sum_probs=75.5
Q ss_pred HHHHHHHHhccCchhhhHHHHhchheehhhhHHHHHHHHHHHhccCCCCChHHHHHHHHHhhccccccH--H-HHHHH--
Q 015506 214 LRQAKEAAAYSRTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKEAGSVDPVTMTISIFLQFFDIGINA--Q-LLSQY-- 288 (405)
Q Consensus 214 L~~~~~r~~~s~T~~Gr~~~~~g~~fsiYCvyKI~~s~in~~f~~~~~~DPit~~L~~~~~~~~~~~d~--~-~~s~~-- 288 (405)
+++....++++||+-| ++|.++.+|-+..++...-.. .--++-.+...+.+-|..+|. + .|.+.
T Consensus 149 lKk~l~Dp~~~~~~lG----vPG~~lLiy~i~~l~~~~~~a-------~~~i~~~iG~yll~kGfgld~~~~~~~~~~~~ 217 (344)
T PF04123_consen 149 LKKALSDPEYRRTFLG----VPGLILLIYAILALLGYPAYA-------LGIILLLIGLYLLYKGFGLDDYLREWLERFRE 217 (344)
T ss_pred HHHhhcChhhhceeec----chHHHHHHHHHHHHHcchHHH-------HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcc
Confidence 4678888999999999 999999999998876541100 111222333333333555553 3 34443
Q ss_pred ------HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcc-hHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 015506 289 ------ISLLFIGMLIVMSVRGFLMNVMKFFFAVSRVGSGSSS-NVVLFLSEIMGMYFVSSILLIRKSLAIEYRIIITEV 361 (405)
Q Consensus 289 ------ISf~L~G~liv~Sir~~L~tl~~~f~~~s~~~s~~~~-~ivL~laelmG~Y~iSt~lLiRsnLP~~~~~~i~~~ 361 (405)
++|+-.-.-.+..+-+........... ...... ....++.....-+.+|-+. ......+++.
T Consensus 218 ~l~~g~it~ityvva~~l~iig~i~g~~~~~~~----~~~~~~~~~~~f~~~~v~~~~~a~l~-------~~~G~iid~~ 286 (344)
T PF04123_consen 218 SLYEGRITFITYVVALLLIIIGIIYGYLTLWSY----YSISGLIVPGTFLYGSVPWLALAALI-------ASLGKIIDEY 286 (344)
T ss_pred ccccceeehHHHHHHHHHHHHHHHHHHHHHHhh----ccccchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 454433322222223322222222211 111110 1122666666666655544 2345566777
Q ss_pred hcCCccccchhhhhhHHHHHHHHHH
Q 015506 362 LGGEIQFDFYHRWFDAIFVASAFLS 386 (405)
Q Consensus 362 Lg~~l~f~f~~~wFD~iFliSa~~t 386 (405)
+.+ ++..++.+.--.|.++....
T Consensus 287 l~~--~~~~~~~i~~~~~~~a~~~v 309 (344)
T PF04123_consen 287 LRR--DFRLWRYINAPFFVIAIGLV 309 (344)
T ss_pred Hcc--CcchHHHHHHHHHHHHHHHH
Confidence 776 55555555555555554443
No 22
>PRK09343 prefoldin subunit beta; Provisional
Probab=45.48 E-value=1.9e+02 Score=24.87 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=37.9
Q ss_pred cchhhhhcceecccCc----cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015506 168 SFFKRIVGTVVRSVQD----DQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYS 224 (405)
Q Consensus 168 ~~~~~~~~~~~~~~~~----~~~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~s 224 (405)
+-+.+.+|.+|-..+. ....+++..++.+|+.||.=...+-..+.++++..++...+
T Consensus 54 ~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 54 TPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred chhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555545522111 12246677888889999988888888888888877766554
No 23
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=45.24 E-value=2.3e+02 Score=25.49 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=14.7
Q ss_pred chhHhHHHHHHHHHHHHHHHHHH
Q 015506 185 QKEQDIKIMEAEVQALEELSKQL 207 (405)
Q Consensus 185 ~~~~~i~~L~~Ei~~Le~l~~~l 207 (405)
...++|.+|++|++.|++--..|
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777776654444
No 24
>PRK09039 hypothetical protein; Validated
Probab=44.34 E-value=2.2e+02 Score=29.07 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchH
Q 015506 328 VLFLSEIMGMYFVSSILLIRKSLAIE 353 (405)
Q Consensus 328 vL~laelmG~Y~iSt~lLiRsnLP~~ 353 (405)
+.-+|+-=+..+.-.++ ...+|++
T Consensus 285 N~~LS~~RA~aV~~~Li--~~Gi~~~ 308 (343)
T PRK09039 285 NWELSSARAISVVKFLI--ALGVPAD 308 (343)
T ss_pred HHHHHHHHHHHHHHHHH--HCCCCHH
Confidence 66666666666655444 5677766
No 25
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=41.04 E-value=2.1e+02 Score=23.73 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=22.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 187 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 220 (405)
Q Consensus 187 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r 220 (405)
.+++..++.+++.++.=...+-.++.+++...++
T Consensus 69 e~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 69 KERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777776666666777776665554
No 26
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=39.96 E-value=1.1e+02 Score=31.83 Aligned_cols=44 Identities=11% Similarity=0.236 Sum_probs=35.5
Q ss_pred HhCCCCC-CCCCCCcccchhhhhhhhhhhhHHHHHHhhccccccc
Q 015506 66 RMGIHFP-MPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNL 109 (405)
Q Consensus 66 ~~G~~~p-~~~~~~~~~~~~~~lsRvgViGVtlmAiLSGfgaVst 109 (405)
|-|.++| +.++++..-++++.+.|++++|-..+|++++....-.
T Consensus 327 k~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~~p~l~~ 371 (410)
T TIGR00967 327 KQGMFIPGIRPGKMTEKYLKRVIPRLTFVGSLFLGLIALLPNFLG 371 (410)
T ss_pred HCCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888 4444666778999999999999999999998866543
No 27
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=39.23 E-value=2.3e+02 Score=23.74 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=30.9
Q ss_pred cchhhhhcceecccCc----cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 168 SFFKRIVGTVVRSVQD----DQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 220 (405)
Q Consensus 168 ~~~~~~~~~~~~~~~~----~~~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r 220 (405)
.-..+.+|+++--.+. ....+++..++.+|+.|+.-...+-.++.+++...++
T Consensus 50 ~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 50 TPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred chhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666655522111 1224566667777777777777777777777765554
No 28
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=38.51 E-value=14 Score=33.32 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=22.7
Q ss_pred CchhhhHHHHhchheehhhhHHHHHHHHHHHhccCCCCChH
Q 015506 225 RTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKEAGSVDPV 265 (405)
Q Consensus 225 ~T~~Gr~~~~~g~~fsiYCvyKI~~s~in~~f~~~~~~DPi 265 (405)
+|..+-.....+-+|.-|||| ||+...+||-
T Consensus 6 ~~~~~~~ag~a~~~flgYciY----------FD~KRR~dPd 36 (148)
T TIGR00985 6 KSNVVIAAGIAAAAFLGYAIY----------FDYKRRNDPD 36 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----------hhhhhccCHH
Confidence 444444445678899999987 8888788886
No 29
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=38.49 E-value=39 Score=24.56 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.3
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHH
Q 015506 185 QKEQDIKIMEAEVQALEELSKQLFL 209 (405)
Q Consensus 185 ~~~~~i~~L~~Ei~~Le~l~~~l~~ 209 (405)
+..-..++|+.|+..|+.+.+.||.
T Consensus 15 ~l~vrv~eLEeEV~~LrKINrdLfd 39 (48)
T PF14077_consen 15 QLRVRVSELEEEVRTLRKINRDLFD 39 (48)
T ss_pred hheeeHHHHHHHHHHHHHHhHHHHh
Confidence 4445678999999999999999985
No 30
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=38.00 E-value=3.1e+02 Score=25.55 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 194 EAEVQALEELSKQLFLEIYELRQAKEA 220 (405)
Q Consensus 194 ~~Ei~~Le~l~~~l~~el~~L~~~~~r 220 (405)
+.|.+-|.+|+.++-.|+.||+...+.
T Consensus 144 R~EaeQLQsLR~avRqElqELE~QL~D 170 (179)
T PF14723_consen 144 REEAEQLQSLRSAVRQELQELEFQLED 170 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999976554
No 31
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=35.36 E-value=1.3e+02 Score=23.71 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=19.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 187 EQDIKIMEAEVQALEELSKQLFLEIYELR 215 (405)
Q Consensus 187 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~ 215 (405)
.+.|..|+.|++.|+.=..++..+-.+|+
T Consensus 17 veti~~Lq~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 17 VETIALLQMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35677788888888777555555555554
No 32
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=35.31 E-value=1.5e+02 Score=30.01 Aligned_cols=46 Identities=39% Similarity=0.579 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhhhhHHHHHHhhcccccccc
Q 015506 49 AALGAILFLLAFLYAFWRMGIHFPMPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLP 110 (405)
Q Consensus 49 ~~~~~~~~~~~~l~~f~~~G~~~p~~~~~~~~~~~~~~lsRvgViGVtlmAiLSGfgaVstP 110 (405)
+...+.++|..+-..|. .|+.+|- .. +| +-|.+|++|+|+|-|..-
T Consensus 27 ~R~gt~lFW~llg~~F~-~G~~lp~--------~~------~G-~lvl~m~~la~~~~v~~g 72 (308)
T PF06166_consen 27 KRIGTALFWGLLGLIFI-FGDYLPP--------FV------VG-ILVLVMALLAGFGQVGIG 72 (308)
T ss_pred cccchHHHHHHHHHHHH-cCccchh--------HH------HH-HHHHHHHHHHHcCCCCCC
Confidence 34577788888887777 6888771 01 11 457789999999988753
No 33
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=33.88 E-value=1.5e+02 Score=30.09 Aligned_cols=92 Identities=13% Similarity=0.185 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC-------C------cchhHHHHHH-HHHHHHHHHHH---------------HhC
Q 015506 18 DLFCLILLLVFMLPYYHCYLMLCNSG-------V------RKERAALGAI-LFLLAFLYAFW---------------RMG 68 (405)
Q Consensus 18 ~l~~Ll~lli~viP~~~~~~l~~~~~-------~------~~~~~~~~~~-~~~~~~l~~f~---------------~~G 68 (405)
..+.+...-++..|-+++..+-.... + +.+...-... +..+.++-.|| |-|
T Consensus 199 ~mPiifa~sll~~p~~i~~~l~~~~~~~~~~~~i~~~~~~~~~~~~y~~~~~~li~~Fs~~~~~~~~~p~~iA~~lkk~g 278 (346)
T PF00344_consen 199 VMPIIFASSLLSLPQYIAQFLNSQFPNNWLVSGIAYYFSQNLNSPLYIIFYLILIILFSYFFSFININPKDIAENLKKSG 278 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCSCCSCCSSCCHHHTSSSHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHCHCTT
T ss_pred cchHHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhC
Confidence 46777888888899988776654321 1 1111111111 12222222222 448
Q ss_pred CCCCC-CCCCCcccchhhhhhhhhhhhHHHHHHhhccccccc
Q 015506 69 IHFPM-PSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNL 109 (405)
Q Consensus 69 ~~~p~-~~~~~~~~~~~~~lsRvgViGVtlmAiLSGfgaVst 109 (405)
+++|- ..++...-++++.+.|++++|=..+|++.+..-.-.
T Consensus 279 ~~I~GirpG~~T~~yL~~~i~~~~~~G~~~l~~ia~~p~~~~ 320 (346)
T PF00344_consen 279 DYIPGIRPGKPTEKYLNKVIPRLSFLGALFLALIAVLPLIFG 320 (346)
T ss_dssp SSSSTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEeCCCCCChhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 88883 334666778999999999999999999988765433
No 34
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=33.87 E-value=1.6e+02 Score=30.92 Aligned_cols=94 Identities=13% Similarity=0.254 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC---------CcchhHH-H---HHHHHHHHHHH------------HHHHhCCCCC
Q 015506 18 DLFCLILLLVFMLPYYHCYLMLCNSG---------VRKERAA-L---GAILFLLAFLY------------AFWRMGIHFP 72 (405)
Q Consensus 18 ~l~~Ll~lli~viP~~~~~~l~~~~~---------~~~~~~~-~---~~~~~~~~~l~------------~f~~~G~~~p 72 (405)
..+.+...-++..|..++..+-+... ++.+... . +..+.+..|.| .+-|-|.++|
T Consensus 256 vmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~y~~~y~~lii~Fs~f~~~i~~~p~~iA~~Lkk~g~~Ip 335 (417)
T CHL00161 256 VMPIIFASALLVLPGYLTNILLNQFLLPLLSLFLQLASFKILYLVLYFVLILFFSYFYSTIVLNPKDISENLQKMAVSIP 335 (417)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccchhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcCC
Confidence 45677778888888888765422211 1111111 1 11122233333 3346678888
Q ss_pred -CCCCCCcccchhhhhhhhhhhhHHHHHHhhcccccccch
Q 015506 73 -MPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPY 111 (405)
Q Consensus 73 -~~~~~~~~~~~~~~lsRvgViGVtlmAiLSGfgaVstPy 111 (405)
..++++..-++++.+.|++++|-..+|++++...+-..|
T Consensus 336 GvRpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~l~~~~ 375 (417)
T CHL00161 336 GIRPGKATTKYLKKTLNRLTLLGALFLAFIALLPNLIESV 375 (417)
T ss_pred CcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 344445567899999999999999999999987664433
No 35
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=32.77 E-value=2.2e+02 Score=29.62 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=35.3
Q ss_pred HHHhCCCCC-CCCCCCcccchhhhhhhhhhhhHHHHHHhhcccccc
Q 015506 64 FWRMGIHFP-MPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVN 108 (405)
Q Consensus 64 f~~~G~~~p-~~~~~~~~~~~~~~lsRvgViGVtlmAiLSGfgaVs 108 (405)
+-|-|.++| ..++++..-++++.+.|++++|-..+|++++.-.+-
T Consensus 306 Lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~lP~~~ 351 (395)
T TIGR02920 306 FRKSGNYIPGIAPGKDTQRYLNRLARRFCWFGGVFNAFQLGIPLYF 351 (395)
T ss_pred HHHCCCCccCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888 333567777899999999999999999999875543
No 36
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=32.75 E-value=1.6e+02 Score=30.98 Aligned_cols=45 Identities=16% Similarity=0.305 Sum_probs=35.4
Q ss_pred HHHHhCCCCC-CCCCCCcccchhhhhhhhhhhhHHHHHHhhccccc
Q 015506 63 AFWRMGIHFP-MPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAV 107 (405)
Q Consensus 63 ~f~~~G~~~p-~~~~~~~~~~~~~~lsRvgViGVtlmAiLSGfgaV 107 (405)
.+-|-|.++| ..++++..-++++.+.|++++|-..+|++.+....
T Consensus 338 ~l~k~g~~IpGiRpG~~T~~yL~~~i~r~t~~Ga~~l~~ia~~p~~ 383 (426)
T PRK09204 338 NLKKSGGFIPGIRPGEQTAEYLDKVLTRLTLVGAIYLAFIALLPEI 383 (426)
T ss_pred HHHHCCCcccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456778888 33445566789999999999999999999988665
No 37
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.01 E-value=3e+02 Score=32.05 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015506 191 KIMEAEVQALEELSKQLFLEIYELRQAKEAAAYS 224 (405)
Q Consensus 191 ~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~s 224 (405)
--+.+||+.|..-.++.-.|-.+|+...-|+..+
T Consensus 1095 p~l~~qin~l~na~~qer~er~~Lkg~~mra~~a 1128 (1243)
T KOG0971|consen 1095 PLLLQQINALRNAISQERHERSILKGAQMRASLA 1128 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 4567788888888888888888888777766543
No 38
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=31.08 E-value=1.6e+02 Score=22.05 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=27.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 187 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 221 (405)
Q Consensus 187 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~ 221 (405)
.+.+..|+.++..|+.-..+|-.++..|....++-
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888887766543
No 39
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=30.88 E-value=1.7e+02 Score=23.67 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=21.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 187 EQDIKIMEAEVQALEELSKQLFLEIYE 213 (405)
Q Consensus 187 ~~~i~~L~~Ei~~Le~l~~~l~~el~~ 213 (405)
.+.|.-||+||+.|++=..++..|...
T Consensus 17 vdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 17 IDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999988888877665
No 40
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=29.76 E-value=5.1e+02 Score=24.84 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=24.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 187 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 220 (405)
Q Consensus 187 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r 220 (405)
.+++..|+++++.++..++++.--+.+|....++
T Consensus 83 ~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 83 EQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888776655555554444
No 41
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=28.81 E-value=3e+02 Score=25.86 Aligned_cols=30 Identities=10% Similarity=0.278 Sum_probs=21.4
Q ss_pred HhHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 015506 188 QDIKIMEAEVQALEE---LSKQLFLEIYELRQA 217 (405)
Q Consensus 188 ~~i~~L~~Ei~~Le~---l~~~l~~el~~L~~~ 217 (405)
+.-..||++++++|. ++|+.|.|...-.+.
T Consensus 118 ~~f~~Lq~ql~~tEn~Ia~aR~~YN~av~~yN~ 150 (185)
T COG1704 118 ENFLELQSQLEGTENRIAVARRLYNEAVRDYNV 150 (185)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888874 688888877664443
No 42
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=28.59 E-value=4.6e+02 Score=26.43 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015506 122 DESEIKALERQLMQSIETCIAKKKKIILCQMEMD 155 (405)
Q Consensus 122 ~~~di~~~e~~l~~t~~~l~~kk~~l~~~~~~~~ 155 (405)
+..++.++...+......+..||+++...+.+..
T Consensus 202 d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~ 235 (312)
T smart00787 202 DPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQ 235 (312)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666665543
No 43
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=28.44 E-value=3.3e+02 Score=22.20 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=16.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHH
Q 015506 186 KEQDIKIMEAEVQALEELSKQLFLEI 211 (405)
Q Consensus 186 ~~~~i~~L~~Ei~~Le~l~~~l~~el 211 (405)
.-++|+.++.||.-||.=-.+||.++
T Consensus 59 LL~EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 59 LLEEIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777766555555544
No 44
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=28.21 E-value=5.9e+02 Score=26.95 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=15.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 188 QDIKIMEAEVQALEELSKQLFLEIYELR 215 (405)
Q Consensus 188 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~ 215 (405)
+.|..|.+....|...+..+..|=.+++
T Consensus 161 ~~i~~l~~~~~~l~~~~~~iaaeq~~l~ 188 (420)
T COG4942 161 ERIDALKATLKQLAAVRAEIAAEQAELT 188 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555554444443
No 45
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=27.97 E-value=5.8e+02 Score=24.91 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=29.2
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015506 185 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA 222 (405)
Q Consensus 185 ~~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~ 222 (405)
+++.+.++|+.|++.++.=..++-.|+.++..+++..+
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888888888888888888888888877665543
No 46
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.24 E-value=5.4e+02 Score=24.36 Aligned_cols=91 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhcchhhhhcceecccCccchhHhHHHHHHHHHHHHH
Q 015506 123 ESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEE 202 (405)
Q Consensus 123 ~~di~~~e~~l~~t~~~l~~kk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~Ei~~Le~ 202 (405)
+.++..++.+++...+.+.+++.++...-.+.+. ......++-++|++|++.+++
T Consensus 99 e~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~-------------------------~~~~L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 99 ENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDS-------------------------VINGLKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhhHHHHhchheeh
Q 015506 203 LSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSI 241 (405)
Q Consensus 203 l~~~l~~el~~L~~~~~r~~~s~T~~Gr~~~~~g~~fsi 241 (405)
=.+.+-.|+.+++...+..-+- .|=...+.|.++++
T Consensus 154 ~~~~l~~~~~~~~~~~~~~wf~---~Gg~v~~~GlllGl 189 (206)
T PRK10884 154 KVDAANLQLDDKQRTIIMQWFM---YGGGVAGIGLLLGL 189 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HchHHHHHHHHHHH
No 47
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=27.19 E-value=2.5e+02 Score=30.30 Aligned_cols=49 Identities=29% Similarity=0.372 Sum_probs=32.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHhc
Q 015506 187 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLG 236 (405)
Q Consensus 187 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~s~T~~Gr~~~~~g 236 (405)
.++..+++.|+..++.--..+-.+..+|+...++.- |+-.+||-.|+.|
T Consensus 459 ~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~I-Sk~y~gR~VnimG 507 (507)
T PF05600_consen 459 EEKRQEAQEEQQELEPKLDALVERTRELQKQIEADI-SKRYKGRPVNIMG 507 (507)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCeeeccC
Confidence 455566666777766666666667777776666543 4457888877765
No 48
>PF14854 LURAP: Leucine rich adaptor protein
Probab=27.13 E-value=2e+02 Score=25.13 Aligned_cols=40 Identities=13% Similarity=0.362 Sum_probs=31.6
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015506 184 DQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 223 (405)
Q Consensus 184 ~~~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~ 223 (405)
...+.+++.|++|+.+|+++-..+-.++-.+..-.++.++
T Consensus 18 ~~Ld~kl~~Lr~EM~~LRqlDvkLL~QL~~vNEsIe~~KW 57 (121)
T PF14854_consen 18 SNLDAKLAFLRKEMAGLRQLDVKLLQQLLAVNESIEEVKW 57 (121)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4567899999999999999988888877777665555443
No 49
>PF12507 HCMV_UL139: Human Cytomegalovirus UL139 protein; InterPro: IPR021042 This entry represents eukaryotic and viral proteins of approximately 140 amino acids in length. The UL139 product shares sequence homology with human CD24, a signal transducer modulating B-cell activation responses, and the sequences in the G1c variant of UL139 contained a specific attachment site of prokaryotic membrane lipoprotein lipid [].
Probab=26.65 E-value=57 Score=28.41 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHH
Q 015506 189 DIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNL 234 (405)
Q Consensus 189 ~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~s~T~~Gr~~~~ 234 (405)
+|-.++.+|+.|++=......|+..++.+.++.+.-.+-++||++.
T Consensus 45 ~~l~~rs~i~~~~~k~~~~~~~lrs~~geveE~e~~e~~~drfy~a 90 (121)
T PF12507_consen 45 KILALRSEIEALDAKYHSDSQQLRSCCGEVEEAEEKEEERDRFYEA 90 (121)
T ss_pred HHHHHhhhhhhhhhhhcchhhhhHhhhccchHHHHHHHhHhhhhhh
Confidence 3456677788887777777777777777777777666667777653
No 50
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=26.39 E-value=1.8e+02 Score=27.58 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=58.4
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhcchhhhhcceec----ccCccchhHhHHHH
Q 015506 118 IREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVR----SVQDDQKEQDIKIM 193 (405)
Q Consensus 118 ~r~v~~~di~~~e~~l~~t~~~l~~kk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~L 193 (405)
.+..+..++..+|+.+..-..+=-.+|.+|+..- += =-|.+..||. -|...+.+.+...|
T Consensus 54 k~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~L-------gL---------~pRQVavWFQNRRARwK~kqlE~d~~~L 117 (198)
T KOG0483|consen 54 KRRLTSEQVKFLEKSFESEKKLEPERKKKLAKEL-------GL---------QPRQVAVWFQNRRARWKTKQLEKDYESL 117 (198)
T ss_pred cccccHHHHHHhHHhhccccccChHHHHHHHHhh-------CC---------ChhHHHHHHhhccccccchhhhhhHHHH
Confidence 4567888888888888765433333333433211 10 0112222441 15666778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015506 194 EAEVQALEELSKQLFLEIYELRQAKEAAAY 223 (405)
Q Consensus 194 ~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~ 223 (405)
+.+.+.|..-...|-.|..+|+.+..+...
T Consensus 118 k~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~ 147 (198)
T KOG0483|consen 118 KRQLESLRSENDRLQSEVQELVAELSSLKR 147 (198)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999987765443
No 51
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=25.98 E-value=1.7e+02 Score=25.73 Aligned_cols=43 Identities=30% Similarity=0.351 Sum_probs=33.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccCchhh
Q 015506 187 EQDIKIMEAEVQALEELSKQLFLEIYELRQ--AKEAAAYSRTWRG 229 (405)
Q Consensus 187 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~--~~~r~~~s~T~~G 229 (405)
..+|+.||-|..++|.+...|-.-+..|+. .++|.++.+...|
T Consensus 31 karIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~ 75 (134)
T PF08232_consen 31 KARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYG 75 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 467899999999999999999998888885 5566665554444
No 52
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=25.91 E-value=4.7e+02 Score=23.23 Aligned_cols=34 Identities=6% Similarity=0.196 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015506 123 ESEIKALERQLMQSIETCIAKKKKIILCQMEMDR 156 (405)
Q Consensus 123 ~~di~~~e~~l~~t~~~l~~kk~~l~~~~~~~~~ 156 (405)
+.||++++.++-.+...+-.||..++.+..++.+
T Consensus 21 ~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e 54 (136)
T PF11570_consen 21 DEDIATLQERQASAEQALNGRRSELDQANKKVKE 54 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4569999999998888888899888887766544
No 53
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=25.89 E-value=1.5e+02 Score=28.56 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 192 IMEAEVQALEELSKQLFLEIYELRQAKEAA 221 (405)
Q Consensus 192 ~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~ 221 (405)
.|+.+-.-|+.....+=.++..|..+-.|.
T Consensus 189 ~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl 218 (251)
T PF09753_consen 189 ILKEDNKVLDRTEEGLDRNLSSLKRESKRL 218 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666777776544443
No 54
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=25.84 E-value=2.6e+02 Score=29.66 Aligned_cols=88 Identities=10% Similarity=0.213 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC-----CCcc--------hh----HHHHHHHHHHHHHH------------HHHHhC
Q 015506 18 DLFCLILLLVFMLPYYHCYLMLCNS-----GVRK--------ER----AALGAILFLLAFLY------------AFWRMG 68 (405)
Q Consensus 18 ~l~~Ll~lli~viP~~~~~~l~~~~-----~~~~--------~~----~~~~~~~~~~~~l~------------~f~~~G 68 (405)
.++.+...-++..|..+...+-++. .... +. ......+.+..|+| -+-|-|
T Consensus 269 vIPvIfassll~~p~~i~~~l~~~~~~~~~~~~~~i~~~l~~~~~~y~~~y~~lii~Fs~Fy~~i~~np~~~A~~lkksG 348 (436)
T COG0201 269 VIPVIFASSLLLFPSTIAQFLGNGGLAYYLSPLTSISDALSPGSPVYIALYVVLIIFFSYFYTEIQFNPEEIAENLKKSG 348 (436)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCccccccchhhHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcC
Confidence 4567788888888988877664221 1111 11 12222344455554 456788
Q ss_pred CCCC-CCCCCCcccchhhhhhhhhhhhHHHHHHhhccc
Q 015506 69 IHFP-MPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFG 105 (405)
Q Consensus 69 ~~~p-~~~~~~~~~~~~~~lsRvgViGVtlmAiLSGfg 105 (405)
-++| +..++...-+++..+.|+.++|=..+++++...
T Consensus 349 ~~IPGiRpg~~te~yL~rvi~rlt~~Ga~~l~~iailp 386 (436)
T COG0201 349 GFIPGIRPGKDTEKYLNRVIPRLTFIGALFLGLIAILP 386 (436)
T ss_pred CcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888 333566667899999999999988888887653
No 55
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.60 E-value=2.1e+02 Score=21.62 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015506 190 IKIMEAEVQALEELSKQLFLEIYELRQAKEAAA 222 (405)
Q Consensus 190 i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~ 222 (405)
+..+++|+..++..=..+-.|..+++...++.+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555444
No 56
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=25.25 E-value=7.1e+02 Score=25.03 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=16.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 188 QDIKIMEAEVQALEELSKQLFLEIYELR 215 (405)
Q Consensus 188 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~ 215 (405)
+++..++.|.+.|+..+.+.+.+..+++
T Consensus 78 ~el~~le~e~~~l~~eE~~~~~~~n~~~ 105 (314)
T PF04111_consen 78 QELEELEEELEELDEEEEEYWREYNELQ 105 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555555555544
No 57
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=25.08 E-value=1.2e+02 Score=23.04 Aligned_cols=46 Identities=28% Similarity=0.395 Sum_probs=27.2
Q ss_pred hhhhhhhhhhhHHHHHHhhcccccccchhhhhhhhc------cCCHHHHHHHHHHHHHHHHHH
Q 015506 84 PQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLFIR------EIDESEIKALERQLMQSIETC 140 (405)
Q Consensus 84 ~~~lsRvgViGVtlmAiLSGfgaVstPy~~~~~~~r------~v~~~di~~~e~~l~~t~~~l 140 (405)
+..+--++|+|+.++...| |+.|.| +...++....|++|+...+++
T Consensus 4 ~~~Iy~~~Vi~l~vl~~~~-----------Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLL 55 (58)
T PF13314_consen 4 GDLIYYILVIILIVLFGAS-----------FTLFIRRILINSNAKKQDVDSMEQKLDRIIELL 55 (58)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 4445556677777665544 223433 344556667787888776665
No 58
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=24.91 E-value=4.1e+02 Score=31.94 Aligned_cols=75 Identities=12% Similarity=0.118 Sum_probs=43.4
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhcchhhhhcceecccCccchhHhHHHHHHHHH
Q 015506 119 REIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQ 198 (405)
Q Consensus 119 r~v~~~di~~~e~~l~~t~~~l~~kk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~Ei~ 198 (405)
+.++..||+++-...+...+.+.+-+.++.+.|..+.. +.. .......++..||.|.+
T Consensus 1220 ~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsd----------------i~~------~~~~a~~~LesLq~~~~ 1277 (1758)
T KOG0994|consen 1220 PSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSD----------------ITN------SLPLAGKDLESLQREFN 1277 (1758)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh----------------hhh------ccchhhhhHHHHHHHHH
Confidence 35677777776666555544444444444443333221 110 00111346778999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015506 199 ALEELSKQLFLEIYELR 215 (405)
Q Consensus 199 ~Le~l~~~l~~el~~L~ 215 (405)
+|..+.++|-..+.+++
T Consensus 1278 ~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1278 GLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99998888877777665
No 59
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=24.78 E-value=7.1e+02 Score=26.36 Aligned_cols=11 Identities=9% Similarity=0.244 Sum_probs=6.3
Q ss_pred hHHHHHHhhcc
Q 015506 94 GVTVMAVLAGF 104 (405)
Q Consensus 94 GVtlmAiLSGf 104 (405)
++..-++|||.
T Consensus 15 ~~~~~~~l~~~ 25 (420)
T COG4942 15 TILLASLLSAA 25 (420)
T ss_pred HHHHHHHHHhc
Confidence 45556666553
No 60
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=24.60 E-value=4.4e+02 Score=25.92 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhcchhhhhcceecc-cCccchhHhHHHHHHHHHHHHH
Q 015506 124 SEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRS-VQDDQKEQDIKIMEAEVQALEE 202 (405)
Q Consensus 124 ~di~~~e~~l~~t~~~l~~kk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~~Ei~~Le~ 202 (405)
..|.++.+++.+-.+.+..=+.+++..+.+++..-...+..... . ...-.. ....-.++.|..=+.||..||.
T Consensus 180 eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~----~--~~~~~~~~~~~~~de~I~rEeeEIreLE~ 253 (259)
T PF08657_consen 180 EKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSD----D--EESEESSEDSVDTDEDIRREEEEIRELER 253 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc----c--cccccccccchhHHHHHHHHHHHHHHHHH
Confidence 35778888777777777665556665555544311110000000 0 000000 0111235677777777877776
Q ss_pred HHHH
Q 015506 203 LSKQ 206 (405)
Q Consensus 203 l~~~ 206 (405)
-.++
T Consensus 254 k~~~ 257 (259)
T PF08657_consen 254 KKRE 257 (259)
T ss_pred HHHh
Confidence 6554
No 61
>PRK15396 murein lipoprotein; Provisional
Probab=24.57 E-value=2.6e+02 Score=22.52 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 124 SEIKALERQLMQSIETCIAKKKKIILCQME 153 (405)
Q Consensus 124 ~di~~~e~~l~~t~~~l~~kk~~l~~~~~~ 153 (405)
+|+..+..+.++.......-|..+..++.+
T Consensus 32 sqV~~L~~kvdql~~dv~~~~~~~~~a~~e 61 (78)
T PRK15396 32 SDVQTLNAKVDQLSNDVNAMRSDVQAAKDD 61 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555454444443
No 62
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=24.10 E-value=3.8e+02 Score=21.51 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=22.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 187 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 219 (405)
Q Consensus 187 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~ 219 (405)
.+++..++.||+.|+.-...+-.++.+++....
T Consensus 68 ~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 68 EERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777665443
No 63
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=23.58 E-value=2.8e+02 Score=21.48 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhh
Q 015506 194 EAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGH 230 (405)
Q Consensus 194 ~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~s~T~~Gr 230 (405)
+.+++.||.=....-.++..+..+.++.....+|--|
T Consensus 19 ~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 19 EERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444443333334444444444444444444433
No 64
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=22.85 E-value=28 Score=30.34 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=0.0
Q ss_pred HhchheehhhhHHHHHHHHHHHhccCCCCChH
Q 015506 234 LLGYALSIYCVYKMIKSLQSVVFKEAGSVDPV 265 (405)
Q Consensus 234 ~~g~~fsiYCvyKI~~s~in~~f~~~~~~DPi 265 (405)
+.+.+|.-|||| ||++..+||-
T Consensus 5 ~a~~~~lgYciY----------FD~KRR~dP~ 26 (121)
T PF02064_consen 5 VAAAAFLGYCIY----------FDYKRRSDPD 26 (121)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHhh----------cccccccChH
Confidence 567789999987 7777667775
No 65
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=22.82 E-value=4.2e+02 Score=21.50 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 126 IKALERQLMQSIETCIAKKKKIILCQ 151 (405)
Q Consensus 126 i~~~e~~l~~t~~~l~~kk~~l~~~~ 151 (405)
...+|.+..++.|.|.-=+-+++.++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELK 31 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888887755544554444
No 66
>COG3817 Predicted membrane protein [Function unknown]
Probab=22.30 E-value=3.4e+02 Score=26.99 Aligned_cols=44 Identities=36% Similarity=0.584 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhhhhHHHHHHhhccccccc
Q 015506 50 ALGAILFLLAFLYAFWRMGIHFPMPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNL 109 (405)
Q Consensus 50 ~~~~~~~~~~~l~~f~~~G~~~p~~~~~~~~~~~~~~lsRvgViGVtlmAiLSGfgaVst 109 (405)
...+.++|..|-+.|- .||..|... +| ++|.+||++.|||-|--
T Consensus 32 r~~t~~FW~l~~~tFl-~g~~lp~~v--------------iG-~ivillAliagf~~v~~ 75 (313)
T COG3817 32 RFGTGLFWGLFSLTFL-GGDRLPNIV--------------IG-LIVILLALIAGFGQVKI 75 (313)
T ss_pred eecchHHHHHHHHHHh-ccccccchh--------------Hh-HHHHHHHHHHhcCCccc
Confidence 3466677877777765 467666211 12 57889999999998865
No 67
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=22.08 E-value=4.1e+02 Score=28.31 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=32.1
Q ss_pred HhCCCCCC-CCCCC-cccchhhhhhhhhhhhHHHHHHhhccccc
Q 015506 66 RMGIHFPM-PSPEK-GFFTIPQLVSRIGVIGVTVMAVLAGFGAV 107 (405)
Q Consensus 66 ~~G~~~p~-~~~~~-~~~~~~~~lsRvgViGVtlmAiLSGfgaV 107 (405)
|-|.++|- ..++. ..-++++.+.|++++|-..+|++++.+.+
T Consensus 377 k~g~~IpGiRpG~~~t~~yL~~~i~r~t~~Ga~~l~~ia~lp~~ 420 (462)
T PRK08568 377 NSGMQIPGFRRNPKVIEKVLERYIPPVTVIGGAIVGLLAVLADL 420 (462)
T ss_pred HcCCcccCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677773 23333 46689999999999999999999988554
No 68
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=21.65 E-value=5.1e+02 Score=28.39 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=19.6
Q ss_pred hHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Q 015506 187 EQDIKIMEAEVQA----LEELSKQLFLEIYELRQAKEAAA 222 (405)
Q Consensus 187 ~~~i~~L~~Ei~~----Le~l~~~l~~el~~L~~~~~r~~ 222 (405)
.+++..++.|++. .++++++|-.+...+++..++.+
T Consensus 218 ~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 218 KEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3556666666655 55555555555555554444433
No 69
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=21.62 E-value=5.2e+02 Score=27.81 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=40.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhh--HHHHh-chheehhhhH
Q 015506 187 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGH--MQNLL-GYALSIYCVY 245 (405)
Q Consensus 187 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~s~T~~Gr--~~~~~-g~~fsiYCvy 245 (405)
.++-..|+.||..|.++..+|..|-..|.+..+.....+--+|- +-+++ .-++-=+|-|
T Consensus 164 ~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLerILE~sGL~~~~~y 225 (475)
T PRK10361 164 AQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASGLREGYEY 225 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHHHHHHHhCCCcCCcc
Confidence 35568899999999999999999999999888764444444454 22333 2234445555
No 70
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=21.57 E-value=3.2e+02 Score=22.45 Aligned_cols=51 Identities=20% Similarity=0.308 Sum_probs=26.4
Q ss_pred hhHHH-HHHhhcccccccchhhhhhhhccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015506 93 IGVTV-MAVLAGFGAVNLPYSYLSLFIREID--ESEIKALERQLMQSIETCIAKKKKIILCQMEM 154 (405)
Q Consensus 93 iGVtl-mAiLSGfgaVstPy~~~~~~~r~v~--~~di~~~e~~l~~t~~~l~~kk~~l~~~~~~~ 154 (405)
.||++ .++|+| |.|+| .++ .+|+..+..+.++.......-|...+.++.++
T Consensus 8 ~aviLs~~LLaG--CAs~~---------kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA 61 (85)
T PRK09973 8 GAVVLATCLLSG--CVNEQ---------KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEA 61 (85)
T ss_pred HHHHHHHHHHHH--cCCch---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 345665 66666 222 24566666666665555555555554444443
No 71
>KOG3722 consensus Lipocalin-interacting membrane receptor (LIMR) [Defense mechanisms]
Probab=21.47 E-value=1e+03 Score=25.43 Aligned_cols=87 Identities=29% Similarity=0.485 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHhccchHHHH-HHH--HHhcCC
Q 015506 289 ISLLFIGMLIVMSVRGFLMNVMKFFFAVSRVGSGSSSNVVLFLSEIMGMYFVSSILLIRKSLAIEYRI-IIT--EVLGGE 365 (405)
Q Consensus 289 ISf~L~G~liv~Sir~~L~tl~~~f~~~s~~~s~~~~~ivL~laelmG~Y~iSt~lLiRsnLP~~~~~-~i~--~~Lg~~ 365 (405)
|=.+|+-.++++|+-||-. .+||+....-...++ +.|++|= .+++|-+-|.||.-.|. -|| ++||.-
T Consensus 399 lEv~LIfYlmvtSvVGfYS--lpffr~~~Pkr~dTt------M~qIIgN--cv~iLVlSSALPv~srtlGiTrFDLLGdf 468 (538)
T KOG3722|consen 399 IEVLLIFYLMVTSVVGFYS--LPFFRSLRPKRDDTT------MPQIIGN--CVSILVLSSALPVMSRTLGITRFDLLGDF 468 (538)
T ss_pred HHHHHHHHHHHHHHhhhhc--chhhhccCcCccCCc------cchHhhh--ceeeeeeccccHHHHHhccceeehhcccc
Confidence 4456777888888877532 466666554443333 2344442 23344445566755443 122 456632
Q ss_pred ccccchhh-----hhhHHHHHHHHH
Q 015506 366 IQFDFYHR-----WFDAIFVASAFL 385 (405)
Q Consensus 366 l~f~f~~~-----wFD~iFliSa~~ 385 (405)
=.|++.++ .+...|++-..+
T Consensus 469 grfnWLGnFyIVl~YNllFai~Ttl 493 (538)
T KOG3722|consen 469 GRFNWLGNFYIVLLYNLLFAILTTL 493 (538)
T ss_pred ccceeccceeeehhHHHHHHHHHHH
Confidence 24554333 267777665443
No 72
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=21.39 E-value=3.5e+02 Score=27.00 Aligned_cols=59 Identities=24% Similarity=0.342 Sum_probs=39.6
Q ss_pred HhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCchhhhH--HHHhch-heehhhhHHH
Q 015506 188 QDIKIMEAEVQALEELS---KQLFLEIYELRQAKEAAAYSRTWRGHM--QNLLGY-ALSIYCVYKM 247 (405)
Q Consensus 188 ~~i~~L~~Ei~~Le~l~---~~l~~el~~L~~~~~r~~~s~T~~Gr~--~~~~g~-~fsiYCvyKI 247 (405)
++...|+.++..|.+.. ++|..|..+|.+... ....+--+|-+ -+++.. ++--+|-|..
T Consensus 31 ~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~-~~k~rG~wGE~~Le~iLe~~gl~~~~~y~~ 95 (304)
T PF02646_consen 31 EEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALK-NSKTRGNWGEMQLERILEDSGLPEGCDYET 95 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-CCCchhhHHHHHHHHHHHHcCCCcccchhh
Confidence 34568888999999999 999999999998877 33333333432 233333 3667777754
No 73
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.25 E-value=6.5e+02 Score=27.01 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=23.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015506 188 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 223 (405)
Q Consensus 188 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~ 223 (405)
.+....-+||+.=|++..+|+.|+..+-....|..|
T Consensus 352 qdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~y 387 (521)
T KOG1937|consen 352 QDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVY 387 (521)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHH
Confidence 344444556666678888899998888764444433
No 74
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=21.22 E-value=2.1e+02 Score=29.54 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=24.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 186 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 221 (405)
Q Consensus 186 ~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~ 221 (405)
..++.+.|++|++-|+..+..|=.-+..+++..+..
T Consensus 142 ~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~l 177 (354)
T KOG2577|consen 142 VPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLL 177 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999998888866655455544444333
No 75
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=21.21 E-value=2.9e+02 Score=21.60 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015506 282 AQLLSQYISLLFIGMLIVMSVRGFLMNVMKFFFA 315 (405)
Q Consensus 282 ~~~~s~~ISf~L~G~liv~Sir~~L~tl~~~f~~ 315 (405)
...+..++=|.++.++-+||+--++.++..++.+
T Consensus 9 l~pf~vYlif~fv~c~~iCSi~~~~it~~Q~iDy 42 (67)
T PF03376_consen 9 LPPFAVYLIFAFVTCTCICSIVCFVITFFQCIDY 42 (67)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999998876654
No 76
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=21.06 E-value=9.1e+02 Score=25.41 Aligned_cols=32 Identities=9% Similarity=0.289 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015506 125 EIKALERQLMQSIETCIAKKKKIILCQMEMDR 156 (405)
Q Consensus 125 di~~~e~~l~~t~~~l~~kk~~l~~~~~~~~~ 156 (405)
++..+|+.+...-..+..-|+|+..++.+.+.
T Consensus 3 ~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~ 34 (428)
T PF00846_consen 3 TLEELQEEITQHEQQLVIARQKLKDAEKQYEK 34 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444444444444556677777766554
No 77
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.05 E-value=1.6e+02 Score=29.52 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=39.0
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHhcC--CCcchhHHHHHHHHHHHHHHHHHHhCCC
Q 015506 14 NWKVDLFCLILLLVFMLPYYHCYLMLCNS--GVRKERAALGAILFLLAFLYAFWRMGIH 70 (405)
Q Consensus 14 ~w~~~l~~Ll~lli~viP~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~l~~f~~~G~~ 70 (405)
.|.++..++.-..=|+|-...||++..-. ..++|-.++++.++...|.....-.|+|
T Consensus 103 ~ws~~~~s~tr~mGVLQrIaL~ylfAal~v~~L~~r~q~~laavLL~gYwl~lm~~p~P 161 (371)
T COG4299 103 DWSVTSHSLTRGMGVLQRIALAYLFAALLVRQLRGRWQALLAAVLLAGYWLFLMFTPHP 161 (371)
T ss_pred eeeeeechhhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 57777777777777888888888776432 2455556777777777777666655544
No 78
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=20.99 E-value=2.9e+02 Score=21.52 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015506 191 KIMEAEVQALEELSKQLFLEIYE 213 (405)
Q Consensus 191 ~~L~~Ei~~Le~l~~~l~~el~~ 213 (405)
+.++.|+++|+.+..-|+.++.+
T Consensus 21 s~lr~eiealkY~N~yL~~~~v~ 43 (66)
T PF07438_consen 21 SELRKEIEALKYMNDYLFDQFVR 43 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788999999999999887765
No 79
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=20.70 E-value=5.7e+02 Score=22.29 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=31.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015506 186 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 223 (405)
Q Consensus 186 ~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~ 223 (405)
..++...|+.+|+.|+.=.+.+-.++.+|+.+..+.-.
T Consensus 75 L~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 75 LEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45778889999999999999999999999988776543
No 80
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=20.70 E-value=2.9e+02 Score=23.97 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=28.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 186 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 221 (405)
Q Consensus 186 ~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~ 221 (405)
.+.++..++.|++.|+.-+.++..|+.++-.+.+..
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888899999999999988888887655444
No 81
>smart00338 BRLZ basic region leucin zipper.
Probab=20.46 E-value=3.2e+02 Score=20.48 Aligned_cols=33 Identities=33% Similarity=0.410 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 188 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 220 (405)
Q Consensus 188 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r 220 (405)
+.+..|+.++..|+.-...|-.++..|+.+...
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888777777777777765543
Done!