Query 015506
Match_columns 405
No_of_seqs 123 out of 168
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:48:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 83.5 2.5 8.5E-05 26.6 4.8 28 189-216 3-30 (33)
2 3eff_K Voltage-gated potassium 74.2 17 0.00058 30.3 9.1 31 11-41 1-31 (139)
3 2v71_A Nuclear distribution pr 50.0 1.3E+02 0.0044 27.0 10.4 30 188-217 88-117 (189)
4 3csx_A Putative uncharacterize 47.7 11 0.00038 29.4 2.6 33 185-217 12-44 (81)
5 2l5g_A GPS2 protein, G protein 47.0 20 0.00067 23.9 3.3 25 187-211 14-38 (38)
6 2js5_A Uncharacterized protein 45.0 22 0.00076 27.0 3.8 53 188-249 3-55 (71)
7 2zqm_A Prefoldin beta subunit 44.6 1.2E+02 0.004 24.1 9.5 53 170-222 55-111 (117)
8 3ra3_B P2F; coiled coil domain 40.2 14 0.00046 22.4 1.6 14 188-201 14-27 (28)
9 3lay_A Zinc resistance-associa 38.7 2E+02 0.007 25.2 11.3 34 185-221 110-143 (175)
10 2wt7_A Proto-oncogene protein 38.0 69 0.0024 23.3 5.6 33 188-220 23-55 (63)
11 1go4_E MAD1 (mitotic arrest de 34.6 74 0.0025 25.7 5.6 81 120-202 8-89 (100)
12 4fi5_A Nucleoprotein; structur 34.3 1.9E+02 0.0066 23.7 8.8 81 125-229 23-103 (113)
13 3nmd_A CGMP dependent protein 33.9 90 0.0031 23.7 5.7 25 190-214 42-66 (72)
14 2jee_A YIIU; FTSZ, septum, coi 32.5 1E+02 0.0035 24.0 5.9 29 187-215 19-47 (81)
15 1kd8_A GABH AIV, GCN4 acid bas 32.0 93 0.0032 20.4 4.7 32 189-220 2-33 (36)
16 3tnu_B Keratin, type II cytosk 31.0 81 0.0028 26.1 5.6 33 188-220 43-75 (129)
17 2yy0_A C-MYC-binding protein; 30.1 81 0.0028 22.4 4.7 35 185-219 16-50 (53)
18 3tnu_A Keratin, type I cytoske 29.9 86 0.0029 26.1 5.6 33 188-220 45-77 (131)
19 1t2k_D Cyclic-AMP-dependent tr 29.7 1.2E+02 0.0039 21.8 5.6 33 188-220 22-54 (61)
20 3ghg_A Fibrinogen alpha chain; 29.0 2.9E+02 0.0099 28.7 10.2 29 123-151 59-87 (562)
21 2aze_B Transcription factor E2 28.9 84 0.0029 25.4 5.2 36 188-223 6-41 (106)
22 2k48_A Nucleoprotein; viral pr 28.4 2.4E+02 0.0082 22.9 9.4 38 119-156 30-67 (107)
23 3na7_A HP0958; flagellar bioge 27.4 3.5E+02 0.012 24.7 10.0 28 189-216 91-118 (256)
24 1fmh_A General control protein 27.4 1.2E+02 0.004 19.0 4.6 27 190-216 3-29 (33)
25 3twe_A Alpha4H; unknown functi 25.5 81 0.0028 18.9 3.2 16 205-220 4-19 (27)
26 1jnm_A Proto-oncogene C-JUN; B 25.4 1.4E+02 0.0049 21.4 5.4 33 187-219 21-53 (62)
27 4etp_A Kinesin-like protein KA 25.3 2E+02 0.0068 28.5 8.3 29 188-216 31-59 (403)
28 1fxk_A Prefoldin; archaeal pro 23.7 2.5E+02 0.0087 21.7 9.5 49 170-218 50-102 (107)
29 3q8t_A Beclin-1; autophagy, AT 23.7 1.5E+02 0.0051 23.4 5.7 29 189-217 5-33 (96)
30 2l2l_B Methyl-CPG-binding doma 23.5 97 0.0033 20.4 3.6 17 120-136 6-22 (36)
31 3dl8_G Preprotein translocase 23.1 83 0.0028 31.7 5.0 86 19-104 273-381 (429)
32 3din_C Preprotein translocase 22.9 85 0.0029 31.7 5.0 85 19-104 271-376 (431)
33 1m1j_C Fibrinogen gamma chain; 22.7 5.4E+02 0.019 25.6 10.8 27 124-154 38-64 (409)
34 1gd2_E Transcription factor PA 22.1 1.5E+02 0.005 22.3 5.0 33 187-219 28-60 (70)
35 1t3j_A Mitofusin 1; coiled coi 21.9 2E+02 0.0069 23.0 6.0 19 187-205 53-71 (96)
36 3ra3_A P1C; coiled coil domain 21.7 54 0.0018 19.8 2.0 16 186-201 12-27 (28)
37 3mq9_A Bone marrow stromal ant 21.7 4.1E+02 0.014 26.0 9.9 27 188-221 443-469 (471)
38 2dgc_A Protein (GCN4); basic d 21.3 1.2E+02 0.0041 22.1 4.3 32 187-218 29-60 (63)
39 1ci6_A Transcription factor AT 20.0 2.1E+02 0.0072 20.7 5.4 31 189-219 24-54 (63)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=83.54 E-value=2.5 Score=26.60 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 189 DIKIMEAEVQALEELSKQLFLEIYELRQ 216 (405)
Q Consensus 189 ~i~~L~~Ei~~Le~l~~~l~~el~~L~~ 216 (405)
+|+.|+|||.+|+.--..|-.|+..|++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5788888888888766666667766654
No 2
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=74.24 E-value=17 Score=30.35 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=18.7
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHHHHHHhc
Q 015506 11 RVVNWKVDLFCLILLLVFMLPYYHCYLMLCN 41 (405)
Q Consensus 11 R~~~w~~~l~~Ll~lli~viP~~~~~~l~~~ 41 (405)
|..+|+-.+.+++++++++.-+..++..+.+
T Consensus 1 r~~~~r~~~~~~~~~~~~~~~~a~~~~~~e~ 31 (139)
T 3eff_K 1 SALHWRAAGAATVLLVIVLLAGSYLAVLAER 31 (139)
T ss_dssp CTHHHHTHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566776666666666666555555555433
No 3
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=50.05 E-value=1.3e+02 Score=27.04 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=24.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 188 QDIKIMEAEVQALEELSKQLFLEIYELRQA 217 (405)
Q Consensus 188 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~ 217 (405)
..++.|+.|+..|.....+|-..+.+|+..
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ireLEq~ 117 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVRELEQA 117 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888889988888888888888777753
No 4
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=47.69 E-value=11 Score=29.44 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=25.0
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 185 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQA 217 (405)
Q Consensus 185 ~~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~ 217 (405)
+..+++.+|+.||.-|.....++-.|||+|-..
T Consensus 12 ~t~~di~eLkkevkKL~~~A~q~kmdLHDLaEd 44 (81)
T 3csx_A 12 PTPEAVADLKKKVRKLNSKAGQMKMDLHDLAEG 44 (81)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345678899999999999999999999998653
No 5
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=46.97 E-value=20 Score=23.87 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=21.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHH
Q 015506 187 EQDIKIMEAEVQALEELSKQLFLEI 211 (405)
Q Consensus 187 ~~~i~~L~~Ei~~Le~l~~~l~~el 211 (405)
.++|..|+.+.++|.+=+-|||+++
T Consensus 14 keQi~~l~~kl~~LkeEKHQLFlQL 38 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQLFLQL 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4788999999999999999999864
No 6
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=45.01 E-value=22 Score=27.05 Aligned_cols=53 Identities=13% Similarity=0.285 Sum_probs=36.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHhchheehhhhHHHHH
Q 015506 188 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVYKMIK 249 (405)
Q Consensus 188 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~s~T~~Gr~~~~~g~~fsiYCvyKI~~ 249 (405)
+++.+|+.||.-|.+...++-.||++|-.. ++..+-.++...=..|-+|+=..
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaEd---------LP~~w~~i~~vA~~tyda~~~l~ 55 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAED---------LPTGWNRIMEVAEKTYEAYRQLD 55 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------TTTSGGGHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhcc---------chhhHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999998642 12222234555555555555443
No 7
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=44.63 E-value=1.2e+02 Score=24.12 Aligned_cols=53 Identities=25% Similarity=0.350 Sum_probs=34.9
Q ss_pred hhhhhcceecccCc----cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015506 170 FKRIVGTVVRSVQD----DQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA 222 (405)
Q Consensus 170 ~~~~~~~~~~~~~~----~~~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~ 222 (405)
..+.+|.+|-..+. ....+++..++.+|+.|+.-...+-.++.+++...++..
T Consensus 55 vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 55 VYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp EEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555533221 123566778888888888888888888888887666554
No 8
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=40.21 E-value=14 Score=22.45 Aligned_cols=14 Identities=50% Similarity=0.688 Sum_probs=7.2
Q ss_pred HhHHHHHHHHHHHH
Q 015506 188 QDIKIMEAEVQALE 201 (405)
Q Consensus 188 ~~i~~L~~Ei~~Le 201 (405)
++|+.|+-||.+||
T Consensus 14 qeiaaleyeiaale 27 (28)
T 3ra3_B 14 QEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 34555555555554
No 9
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=38.67 E-value=2e+02 Score=25.24 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=21.8
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 185 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 221 (405)
Q Consensus 185 ~~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~ 221 (405)
.+++.|+++..||..|+ .++..+-.+++.+.++.
T Consensus 110 ~DeakI~aL~~Ei~~Lr---~qL~~~R~k~~~em~Ke 143 (175)
T 3lay_A 110 PDTAKINAVAKEMESLG---QKLDEQRVKRDVAMAQA 143 (175)
T ss_dssp CCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 34667777777776554 46666666666665444
No 10
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.01 E-value=69 Score=23.28 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=26.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 188 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 220 (405)
Q Consensus 188 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r 220 (405)
+.+..|+.|++.|+.-...|-.++..|+.+...
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888776654
No 11
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=34.59 E-value=74 Score=25.73 Aligned_cols=81 Identities=11% Similarity=0.104 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccchhhhhhcchhhhhcceecccCccchhHhHHHHHHHHH
Q 015506 120 EIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDR-IQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQ 198 (405)
Q Consensus 120 ~v~~~di~~~e~~l~~t~~~l~~kk~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~Ei~ 198 (405)
|.+..++..+.+.+..--.--..=|++++.++.++.+ .+.++-+.+....++-.. .-.+....+..+++..||+|++
T Consensus 8 ~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~--NPa~~a~~~~~~~~e~Lq~E~e 85 (100)
T 1go4_E 8 LFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSL--NPTSVARQRLREDHSQLQAECE 85 (100)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESS--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecC--ChHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 015506 199 ALEE 202 (405)
Q Consensus 199 ~Le~ 202 (405)
.|..
T Consensus 86 rLr~ 89 (100)
T 1go4_E 86 RLRG 89 (100)
T ss_dssp HHHH
T ss_pred HHHH
No 12
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=34.30 E-value=1.9e+02 Score=23.71 Aligned_cols=81 Identities=11% Similarity=0.133 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhcchhhhhcceecccCccchhHhHHHHHHHHHHHHHHH
Q 015506 125 EIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEELS 204 (405)
Q Consensus 125 di~~~e~~l~~t~~~l~~kk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~Ei~~Le~l~ 204 (405)
+|..+|..+...-..|..-|.|+..++...+.. .++.++ + -+..-+.++++|++--
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~D--PDevNK-~---------------------tl~~R~~~Vs~lq~Ki 78 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKD--PDELNK-R---------------------TLTDREGVAVSIQAKI 78 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHH-H---------------------HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcHHHH-H---------------------HHHHHHHHHHHHHHHH
Confidence 355555555555455555566777777665541 111110 0 1123356777777777
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhh
Q 015506 205 KQLFLEIYELRQAKEAAAYSRTWRG 229 (405)
Q Consensus 205 ~~l~~el~~L~~~~~r~~~s~T~~G 229 (405)
.++-..+.+.....+.....+-+.|
T Consensus 79 aeLKrqLAd~va~~k~~~k~~DPTG 103 (113)
T 4fi5_A 79 DELKRQLADRIATGKNLGKEQDPTG 103 (113)
T ss_dssp HHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHhcccccCCCCCCC
Confidence 7777777776654444333344444
No 13
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=33.91 E-value=90 Score=23.75 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 190 IKIMEAEVQALEELSKQLFLEIYEL 214 (405)
Q Consensus 190 i~~L~~Ei~~Le~l~~~l~~el~~L 214 (405)
|..|+.|++..++.=++|-.|+++.
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444443
No 14
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=32.52 E-value=1e+02 Score=23.96 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=23.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 187 EQDIKIMEAEVQALEELSKQLFLEIYELR 215 (405)
Q Consensus 187 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~ 215 (405)
.+.|.-||+||+.|+.=..++..|..+++
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~ 47 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQ 47 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999988888888777744
No 15
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=31.95 E-value=93 Score=20.42 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 189 DIKIMEAEVQALEELSKQLFLEIYELRQAKEA 220 (405)
Q Consensus 189 ~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r 220 (405)
++++|+.+++.|..=...|-.|+..|+.....
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 34677888888877777888888887766543
No 16
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.96 E-value=81 Score=26.12 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=25.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 188 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 220 (405)
Q Consensus 188 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r 220 (405)
..+..|+.|+++++.+..+|-..+.+++.+.+.
T Consensus 43 r~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~ 75 (129)
T 3tnu_B 43 RMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 356788889999998888888888877765543
No 17
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=30.12 E-value=81 Score=22.38 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=28.2
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 185 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 219 (405)
Q Consensus 185 ~~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~ 219 (405)
++..+...|++|.+.|+.=-..|-.+..+++.+.+
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567789999999999888888888888887654
No 18
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.93 E-value=86 Score=26.07 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=26.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 188 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 220 (405)
Q Consensus 188 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r 220 (405)
..+..|+.|+++++.+..+|-..+.+++.+.+.
T Consensus 45 r~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~ 77 (131)
T 3tnu_A 45 RTMQNLEIELQSQLSMKASLENSLEETKGRYCM 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 467889999999999988888888887765544
No 19
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=29.72 E-value=1.2e+02 Score=21.79 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=24.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 188 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 220 (405)
Q Consensus 188 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r 220 (405)
+.+..|+.+++.|++-...|-.++..|+.+...
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888877766553
No 20
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.95 E-value=2.9e+02 Score=28.66 Aligned_cols=29 Identities=10% Similarity=0.011 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 123 ESEIKALERQLMQSIETCIAKKKKIILCQ 151 (405)
Q Consensus 123 ~~di~~~e~~l~~t~~~l~~kk~~l~~~~ 151 (405)
|.|+......|.+-.+.+.+.++....+-
T Consensus 59 ErDltkrINELKnqLEdlsKnsKdseqy~ 87 (562)
T 3ghg_A 59 NQDFTNRINKLKNSLFEYQKNNKDSHSLT 87 (562)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 44555555666666666644444544443
No 21
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=28.92 E-value=84 Score=25.45 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=26.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015506 188 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 223 (405)
Q Consensus 188 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~ 223 (405)
+++..|++|++.|+..++.|=.-+..+++..+....
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788999999999988887777776665555443
No 22
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=28.36 E-value=2.4e+02 Score=22.91 Aligned_cols=38 Identities=8% Similarity=0.188 Sum_probs=29.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015506 119 REIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDR 156 (405)
Q Consensus 119 r~v~~~di~~~e~~l~~t~~~l~~kk~~l~~~~~~~~~ 156 (405)
.|.+-+|+..+|+.+.+.-..|..-|.|+..++...+.
T Consensus 30 ~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~ 67 (107)
T 2k48_A 30 DPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEV 67 (107)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35667888888888888877777888888888877664
No 23
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=27.42 E-value=3.5e+02 Score=24.71 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 189 DIKIMEAEVQALEELSKQLFLEIYELRQ 216 (405)
Q Consensus 189 ~i~~L~~Ei~~Le~l~~~l~~el~~L~~ 216 (405)
+...|+.||+.++.-...+-.++.++..
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e 118 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQN 118 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444444444433
No 24
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=27.35 E-value=1.2e+02 Score=18.99 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 190 IKIMEAEVQALEELSKQLFLEIYELRQ 216 (405)
Q Consensus 190 i~~L~~Ei~~Le~l~~~l~~el~~L~~ 216 (405)
.++|+.|+..-|.-..||-.|+..|+.
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 467788888888777777777776653
No 25
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.52 E-value=81 Score=18.88 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 015506 205 KQLFLEIYELRQAKEA 220 (405)
Q Consensus 205 ~~l~~el~~L~~~~~r 220 (405)
.++|.|+.+++.+.+.
T Consensus 4 delykeledlqerlrk 19 (27)
T 3twe_A 4 DELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4577888888766554
No 26
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.37 E-value=1.4e+02 Score=21.40 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=25.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 187 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 219 (405)
Q Consensus 187 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~ 219 (405)
-+.+..|+.+++.|+.-...|-.++..|+.+..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888888888888888888888877654
No 27
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.28 E-value=2e+02 Score=28.50 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=22.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 188 QDIKIMEAEVQALEELSKQLFLEIYELRQ 216 (405)
Q Consensus 188 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~ 216 (405)
+++..++++...-|.+++.|+.++.||+.
T Consensus 31 ~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 31 LGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34566777777788899999999999874
No 28
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=23.75 E-value=2.5e+02 Score=21.65 Aligned_cols=49 Identities=8% Similarity=0.275 Sum_probs=27.6
Q ss_pred hhhhhcceecccCc----cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 170 FKRIVGTVVRSVQD----DQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAK 218 (405)
Q Consensus 170 ~~~~~~~~~~~~~~----~~~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~ 218 (405)
.++.+|.+|-..+. ....+++..++.+|+.|+.-...+-.++.+++...
T Consensus 50 vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 50 VYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp EEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566656633221 12245566666677777766666666666666543
No 29
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=23.68 E-value=1.5e+02 Score=23.45 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 189 DIKIMEAEVQALEELSKQLFLEIYELRQA 217 (405)
Q Consensus 189 ~i~~L~~Ei~~Le~l~~~l~~el~~L~~~ 217 (405)
++..++.|+..|+.=+..+..||.++...
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke 33 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKN 33 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666666666666666666665543
No 30
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=23.48 E-value=97 Score=20.43 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=14.2
Q ss_pred cCCHHHHHHHHHHHHHH
Q 015506 120 EIDESEIKALERQLMQS 136 (405)
Q Consensus 120 ~v~~~di~~~e~~l~~t 136 (405)
.|||.||..-|.+...+
T Consensus 6 ~Vte~DIr~QE~rV~~a 22 (36)
T 2l2l_B 6 IVTDEDIRKQEERVQQV 22 (36)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHH
Confidence 48999999999887755
No 31
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=23.07 E-value=83 Score=31.71 Aligned_cols=86 Identities=10% Similarity=0.156 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC------CCcchh-HHHHHHHHHHHHHHHHH---------------HhCCCCCCC-C
Q 015506 19 LFCLILLLVFMLPYYHCYLMLCNS------GVRKER-AALGAILFLLAFLYAFW---------------RMGIHFPMP-S 75 (405)
Q Consensus 19 l~~Ll~lli~viP~~~~~~l~~~~------~~~~~~-~~~~~~~~~~~~l~~f~---------------~~G~~~p~~-~ 75 (405)
++.+...-++..|..+...+-++. -+.... .....-+..++++-.|| |-|.++|-- +
T Consensus 273 mPiIfassll~~p~~i~~~~~~~~~~~~~~~l~~~~~~y~~~y~~lii~Fs~fy~~i~~np~diA~~lkk~G~~IpGiRp 352 (429)
T 3dl8_G 273 IPIIFAQALLLIPSTLLNFVQNPFIKVIADMFQPGAIFYNFLYVTFIVFFTYFYTAVLINPVELAENLHKAGAFIPGVRP 352 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHSCSSCCCCTTTTTTTTTHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHTCCCCBSSSBCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHcchHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcCCCCCC
Confidence 456666677788888765331111 011121 11111223333344444 456666632 2
Q ss_pred CCCcccchhhhhhhhhhhhHHHHHHhhcc
Q 015506 76 PEKGFFTIPQLVSRIGVIGVTVMAVLAGF 104 (405)
Q Consensus 76 ~~~~~~~~~~~lsRvgViGVtlmAiLSGf 104 (405)
+++..-++++.+.|++++|-..+|+++..
T Consensus 353 G~~T~~yL~~vi~rit~~Ga~~L~~iavl 381 (429)
T 3dl8_G 353 GQDTVKYLERIINRLIFFGALFLSVIALI 381 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 23445578999999999998888877764
No 32
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=22.93 E-value=85 Score=31.67 Aligned_cols=85 Identities=16% Similarity=0.210 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----CCcchh-HHHHHHHHHHHHHHHHH---------------HhCCCCC-CCCCC
Q 015506 19 LFCLILLLVFMLPYYHCYLMLCNS----GVRKER-AALGAILFLLAFLYAFW---------------RMGIHFP-MPSPE 77 (405)
Q Consensus 19 l~~Ll~lli~viP~~~~~~l~~~~----~~~~~~-~~~~~~~~~~~~l~~f~---------------~~G~~~p-~~~~~ 77 (405)
++.+...-++..|..+...+ .+. -+..+. .....-+..++++-.|| |-|.++| +.+++
T Consensus 271 mPiIfassll~~p~~i~~~~-~~~~~~~~~~~~~~~y~~~y~~lii~Fs~fy~~i~~np~diA~~lkk~G~~IpGiRpG~ 349 (431)
T 3din_C 271 IPIIFASAIVSIPSAIASIT-NNETLKNLFRAGGFLYLLIYGLLVFFFTYFYSVVIFDPREISENIRKYGGYIPGLRPGR 349 (431)
T ss_dssp SHHHHHHHHHHHHHHHTTSS-TTCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTCTTHHHHHTTSCCCCBCSSCCCCCTT
T ss_pred hHHHHHHHHHHHHHHHHHHc-chHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcCCCCCCCh
Confidence 45566666777787765432 211 112222 11111223333444445 4566667 22334
Q ss_pred CcccchhhhhhhhhhhhHHHHHHhhcc
Q 015506 78 KGFFTIPQLVSRIGVIGVTVMAVLAGF 104 (405)
Q Consensus 78 ~~~~~~~~~lsRvgViGVtlmAiLSGf 104 (405)
+..-++++.+.|++++|-..+|+++..
T Consensus 350 ~T~~yL~~vi~rit~~Ga~~L~~iavl 376 (431)
T 3din_C 350 STEQYLHRVLNRVTFIGAVFLVVIALL 376 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555679999999999998888877764
No 33
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.65 E-value=5.4e+02 Score=25.59 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015506 124 SEIKALERQLMQSIETCIAKKKKIILCQMEM 154 (405)
Q Consensus 124 ~di~~~e~~l~~t~~~l~~kk~~l~~~~~~~ 154 (405)
.+++.+|..+ +.+.+++.....+...+
T Consensus 38 ~~l~~LE~~l----~elsn~ts~v~~Lvk~i 64 (409)
T 1m1j_C 38 GELLEIEGLL----QQATNSTGSIEYLIQHI 64 (409)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3555554433 34444444444444433
No 34
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.10 E-value=1.5e+02 Score=22.31 Aligned_cols=33 Identities=36% Similarity=0.447 Sum_probs=23.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 187 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 219 (405)
Q Consensus 187 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~ 219 (405)
.+.|..|+.++..|+....++-.|...|+....
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~ 60 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVR 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888887777666666664433
No 35
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=21.91 E-value=2e+02 Score=22.98 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=13.0
Q ss_pred hHhHHHHHHHHHHHHHHHH
Q 015506 187 EQDIKIMEAEVQALEELSK 205 (405)
Q Consensus 187 ~~~i~~L~~Ei~~Le~l~~ 205 (405)
.++|++|++||..||.+.+
T Consensus 53 ~~EI~~L~~eI~~LE~iqs 71 (96)
T 1t3j_A 53 EEEIARLSKEIDQLEKMQN 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677777777777776643
No 36
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.71 E-value=54 Score=19.81 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=10.0
Q ss_pred hhHhHHHHHHHHHHHH
Q 015506 186 KEQDIKIMEAEVQALE 201 (405)
Q Consensus 186 ~~~~i~~L~~Ei~~Le 201 (405)
.+++|+.|+|.|.+|+
T Consensus 12 leqkiaalkqkiaslk 27 (28)
T 3ra3_A 12 LEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3556667776666654
No 37
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.69 E-value=4.1e+02 Score=26.03 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=13.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 188 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 221 (405)
Q Consensus 188 ~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~ 221 (405)
.+|.+++.||..|+ .++.+++.+.+|.
T Consensus 443 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 443 KKVEELEGEITTLN-------HKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 34555555554444 3455555444443
No 38
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.33 E-value=1.2e+02 Score=22.13 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=25.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 187 EQDIKIMEAEVQALEELSKQLFLEIYELRQAK 218 (405)
Q Consensus 187 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~ 218 (405)
.+.+..|+.+++.|+.-...|-.|+..|+.+.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999888888888888887654
No 39
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.01 E-value=2.1e+02 Score=20.69 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 189 DIKIMEAEVQALEELSKQLFLEIYELRQAKE 219 (405)
Q Consensus 189 ~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~ 219 (405)
++..|+.|++.|+.-..+|-.++..|+.+.+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777766666666666665543
Done!