Query 015506
Match_columns 405
No_of_seqs 123 out of 168
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 13:49:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015506.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015506hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gqea_ e.38.1.1 (A:) Polypept 43.1 64 0.0047 29.4 10.4 32 124-155 6-39 (362)
2 d2azeb1 e.63.1.2 (B:201-301) T 26.6 52 0.0038 24.6 5.5 27 190-216 3-29 (101)
3 d1nlwa_ a.38.1.1 (A:) Mad prot 15.6 1E+02 0.0075 21.2 4.8 33 187-219 46-78 (79)
4 d1nkpa_ a.38.1.1 (A:) Myc prot 15.2 1.8E+02 0.013 20.2 8.6 33 187-219 51-83 (88)
5 d1io1a_ e.32.1.1 (A:) Phase 1 13.8 2.1E+02 0.015 23.8 7.5 24 209-232 58-81 (395)
6 d1ydxa2 d.287.1.2 (A:194-374) 13.2 84 0.0061 24.0 4.2 19 189-207 154-172 (181)
7 d2axtj1 f.23.32.1 (J:7-40) Pho 13.0 41 0.003 20.2 1.5 22 85-106 11-32 (34)
8 d2azeb1 e.63.1.2 (B:201-301) T 13.0 1.4E+02 0.01 21.9 5.1 38 186-223 6-43 (101)
9 d2pila_ d.24.1.1 (A:) Pilin Gc 12.3 70 0.0051 23.6 3.3 14 95-108 10-23 (158)
10 d1ydxa1 d.287.1.2 (A:1-193) Bi 10.9 1.1E+02 0.008 23.5 4.2 24 188-211 158-181 (193)
No 1
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=43.15 E-value=64 Score=29.38 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh
Q 015506 124 SEIKALERQLMQSIE--TCIAKKKKIILCQMEMD 155 (405)
Q Consensus 124 ~di~~~e~~l~~t~~--~l~~kk~~l~~~~~~~~ 155 (405)
.+|+.+.+++..... .+..||+|+..++.+++
T Consensus 6 ~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~ls 39 (362)
T d1gqea_ 6 NRIQDLTERSDVLRGYLDYDAKKERLEEVNAELE 39 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhc
Confidence 456666666665544 35678889988887765
No 2
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.59 E-value=52 Score=24.57 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 190 IKIMEAEVQALEELSKQLFLEIYELRQ 216 (405)
Q Consensus 190 i~~L~~Ei~~Le~l~~~l~~el~~L~~ 216 (405)
+..|++|++.|+..++.|=.-...+++
T Consensus 3 ~~~L~~El~~L~~~E~~LD~li~~~~~ 29 (101)
T d2azeb1 3 LEGLTQDLRQLQESEQQLDHLMNICTT 29 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666665444444443
No 3
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.58 E-value=1e+02 Score=21.15 Aligned_cols=33 Identities=24% Similarity=0.161 Sum_probs=25.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 187 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 219 (405)
Q Consensus 187 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~ 219 (405)
.+.|..|+.++..++.-..+|..+..+|+.+.+
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578888998888888888888888777776543
No 4
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.15 E-value=1.8e+02 Score=20.19 Aligned_cols=33 Identities=24% Similarity=0.095 Sum_probs=25.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015506 187 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 219 (405)
Q Consensus 187 ~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~ 219 (405)
.+.|..|+.+++.|+.-..++-.+...|+.+.+
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~ 83 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889998888888777777777777666554
No 5
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=13.82 E-value=2.1e+02 Score=23.79 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhccCchhhhHH
Q 015506 209 LEIYELRQAKEAAAYSRTWRGHMQ 232 (405)
Q Consensus 209 ~el~~L~~~~~r~~~s~T~~Gr~~ 232 (405)
.|+.+|+++..|.....++-|+.+
T Consensus 58 ~E~~~l~~ei~~ia~~T~fng~~L 81 (395)
T d1io1a_ 58 AEITQRLNEIDRVSGQTQFNGVKV 81 (395)
T ss_dssp HHHHHHHHHHHHHHHHCCBTTBCT
T ss_pred HHHHHHHHHHHHHHHhCeeCCccc
Confidence 666777777888877788888663
No 6
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=13.24 E-value=84 Score=24.03 Aligned_cols=19 Identities=16% Similarity=0.322 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 015506 189 DIKIMEAEVQALEELSKQL 207 (405)
Q Consensus 189 ~i~~L~~Ei~~Le~l~~~l 207 (405)
.|..++++++.|+++++.|
T Consensus 154 ~i~~~~~~i~~l~~lk~~L 172 (181)
T d1ydxa2 154 KLDQYKKELSSLTVIRDTL 172 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 7
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.98 E-value=41 Score=20.16 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=17.6
Q ss_pred hhhhhhhhhhHHHHHHhhcccc
Q 015506 85 QLVSRIGVIGVTVMAVLAGFGA 106 (405)
Q Consensus 85 ~~lsRvgViGVtlmAiLSGfga 106 (405)
..+.-++++|+..-+.-||.|+
T Consensus 11 ~G~~vi~~vG~FfYGsYsGlGS 32 (34)
T d2axtj1 11 AGMGVIVIVGLFFYGAYAGLGS 32 (34)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTS
T ss_pred hhhhhHhheeeeeeeeeccccc
Confidence 4566678888888888899886
No 8
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.97 E-value=1.4e+02 Score=21.94 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=30.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015506 186 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 223 (405)
Q Consensus 186 ~~~~i~~L~~Ei~~Le~l~~~l~~el~~L~~~~~r~~~ 223 (405)
..+++..|++|-+.|..+.+.+-.++.++....+..++
T Consensus 6 L~~El~~L~~~E~~LD~li~~~~~~L~~lted~~n~k~ 43 (101)
T d2azeb1 6 LTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRL 43 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccC
Confidence 35688999999999999999999999888865555544
No 9
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=12.35 E-value=70 Score=23.62 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=11.0
Q ss_pred HHHHHHhhcccccc
Q 015506 95 VTVMAVLAGFGAVN 108 (405)
Q Consensus 95 VtlmAiLSGfgaVs 108 (405)
|.++|||+++|.-+
T Consensus 10 iaIIgILaaia~P~ 23 (158)
T d2pila_ 10 IAIVGILAAVALPA 23 (158)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56788999998655
No 10
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=10.91 E-value=1.1e+02 Score=23.46 Aligned_cols=24 Identities=4% Similarity=0.170 Sum_probs=12.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 015506 188 QDIKIMEAEVQALEELSKQLFLEI 211 (405)
Q Consensus 188 ~~i~~L~~Ei~~Le~l~~~l~~el 211 (405)
+.|..+++|++.|+.+.+.|..++
T Consensus 158 ~~i~~~~~~i~~l~~~~~~ll~~l 181 (193)
T d1ydxa1 158 ERLENLASLIEINRKLRDEYAHKL 181 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555444
Done!