Query 015507
Match_columns 405
No_of_seqs 186 out of 550
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 13:49:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015507.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015507hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hqf_A Thrombospondin-related 98.6 7.3E-07 2.5E-11 84.1 13.8 151 100-285 21-179 (281)
2 4hqo_A Sporozoite surface prot 98.5 1.9E-07 6.5E-12 87.9 9.2 149 101-284 19-175 (266)
3 3n2n_F Anthrax toxin receptor 98.4 2.4E-06 8.1E-11 74.2 11.6 147 101-285 8-158 (185)
4 3ibs_A Conserved hypothetical 98.3 1.4E-06 4.8E-11 77.8 9.1 139 101-275 12-150 (218)
5 2xgg_A Microneme protein 2; A/ 98.3 4.1E-06 1.4E-10 73.5 11.3 137 101-275 18-162 (178)
6 1q0p_A Complement factor B; VO 98.3 1.2E-06 4.1E-11 78.1 7.8 156 100-284 15-190 (223)
7 1shu_X Anthrax toxin receptor 98.3 1.8E-06 6.2E-11 74.7 8.3 147 101-285 7-155 (182)
8 4fx5_A VON willebrand factor t 98.3 1.8E-06 6.3E-11 88.5 9.3 151 100-284 77-230 (464)
9 1n3y_A Integrin alpha-X; alpha 98.2 1.8E-06 6E-11 76.0 5.7 143 101-284 10-165 (198)
10 1atz_A VON willebrand factor; 98.1 7.4E-06 2.5E-10 72.1 9.2 142 101-284 6-156 (189)
11 1ijb_A VON willebrand factor; 98.1 9.3E-06 3.2E-10 72.8 8.8 145 101-283 14-166 (202)
12 2odp_A Complement C2; C3/C5 co 98.1 6.3E-06 2.2E-10 83.3 8.2 154 100-285 9-185 (509)
13 4b4t_W RPN10, 26S proteasome r 98.0 2.2E-05 7.6E-10 75.9 10.8 162 103-300 6-174 (268)
14 2x31_A Magnesium-chelatase 60 98.0 6.9E-07 2.4E-11 78.4 0.2 152 101-284 6-161 (189)
15 2b2x_A Integrin alpha-1; compu 98.0 3.3E-05 1.1E-09 70.0 11.2 132 101-275 23-164 (223)
16 2x5n_A SPRPN10, 26S proteasome 98.0 4.2E-05 1.5E-09 69.6 11.8 162 102-302 4-172 (192)
17 1pt6_A Integrin alpha-1; cell 98.0 4.5E-05 1.5E-09 68.4 11.0 132 101-275 8-149 (213)
18 3hrz_D Complement factor B; se 98.0 2.8E-05 9.5E-10 81.9 10.7 157 100-285 243-419 (741)
19 1mf7_A Integrin alpha M; cell 97.9 2E-06 6.7E-11 75.9 1.1 143 101-284 6-161 (194)
20 1rrk_A Complement factor B; BB 97.9 3E-05 1E-09 77.8 9.4 153 101-285 2-177 (497)
21 1v7p_C Integrin alpha-2; snake 97.8 0.0002 6.8E-09 63.6 11.8 131 101-274 7-147 (200)
22 3zqk_A VON willebrand factor; 97.5 0.00012 4.1E-09 65.4 6.6 138 101-285 22-169 (199)
23 3k6s_A Integrin alpha-X; cell 97.3 0.00039 1.3E-08 78.4 8.3 142 101-285 131-287 (1095)
24 1mjn_A Integrin alpha-L; rossm 97.2 0.00081 2.8E-08 58.9 7.8 138 101-284 3-151 (179)
25 1jey_A KU70; double-strand DNA 97.0 0.0049 1.7E-07 65.2 12.6 160 96-278 33-212 (609)
26 1jey_B KU80; double-strand DNA 96.9 0.0041 1.4E-07 65.0 10.7 150 96-275 4-170 (565)
27 1yvr_A RO autoantigen, 60-kDa 96.8 0.012 4E-07 61.1 13.2 139 101-278 369-507 (538)
28 2nvo_A RO sixty-related protei 96.0 0.03 1E-06 58.2 10.8 140 101-277 363-502 (535)
29 2ww8_A RRGA, cell WALL surface 90.3 1.3 4.5E-05 49.1 11.0 122 101-237 225-392 (893)
30 2iue_A Pactolus I-domain; memb 82.9 1.9 6.6E-05 40.1 6.1 108 101-237 4-118 (212)
31 3fcs_B Integrin beta-3; beta p 75.9 4.1 0.00014 44.0 6.7 49 188-236 200-255 (690)
32 3rag_A Uncharacterized protein 70.2 5.3 0.00018 38.0 5.3 89 101-219 135-227 (242)
33 3rag_A Uncharacterized protein 61.3 5.2 0.00018 38.0 3.3 42 223-276 9-50 (242)
34 3k6s_B Integrin beta-2; cell r 47.3 30 0.001 37.4 6.7 18 97-115 102-119 (687)
35 3t3p_B Integrin beta-3; integr 35.4 41 0.0014 34.9 5.3 49 189-237 201-256 (472)
36 3otr_A Enolase; structural gen 31.8 79 0.0027 32.6 6.7 147 82-269 227-381 (452)
37 3qtp_A Enolase 1; glycolysis, 30.3 84 0.0029 32.3 6.6 66 82-151 223-296 (441)
38 3v4v_B Integrin beta-7; cell a 29.7 36 0.0012 35.6 3.8 48 189-237 221-275 (503)
39 2z73_A Rhodopsin; visual pigme 28.0 13 0.00043 35.8 0.0 36 28-65 398-433 (448)
No 1
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.57 E-value=7.3e-07 Score=84.09 Aligned_cols=151 Identities=15% Similarity=0.181 Sum_probs=101.4
Q ss_pred eeceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHH-HHHHHHHhhhccccCC---CCccceEeecCCCCCCCCccccc
Q 015507 100 SSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPY-EQAISIIGKTLAVFDE---DNLIPCYGFGDASTHDQDVFSFY 175 (405)
Q Consensus 100 ~~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Y-qqAI~~Ig~vl~~yD~---D~~ip~yGFGa~~~~~~~vF~f~ 175 (405)
.+++++.||-|+||+. ..+ +++...+..++..+.. +-.|-++.|+.... .+|.|+
T Consensus 21 ~~div~vlD~SgSM~~------------------~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~---~~~~l~ 79 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRR------------------HNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAR---EIIRLH 79 (281)
T ss_dssp CEEEEEEEECCCCSST------------------HHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEE---EEEEEC
T ss_pred ceeEEEEEeCCCCcCH------------------HHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCce---EEEEcc
Confidence 4789999999999962 123 5555556666666654 66799999997643 234554
Q ss_pred CCCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC---CccEEEEEEeCCccccccccccCCCChhHHH
Q 015507 176 SGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG---GQYHVLLIIADGQVTRSVDTVRGCLSPQEQK 252 (405)
Q Consensus 176 ~~~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~---~~Y~VLLIITDG~Itds~d~~~~~~~~d~~e 252 (405)
... -...+.++++-.++-......|-|+....|+.|.+.....+ +.-.++|+||||..++ ...
T Consensus 80 ~~~--~~~~~~l~~~i~~l~~~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d------------~~~ 145 (281)
T 4hqf_A 80 SDA--SKNKEKALIIIKSLLSTNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDS------------IQD 145 (281)
T ss_dssp SSC--SSCHHHHHHHHHHHHHTTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSC------------HHH
T ss_pred ccC--ccCHHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCC------------cHH
Confidence 321 11344554444333223345789999999999988776542 2457889999999875 345
Q ss_pred HHHHHHHhcCCCcEEEEEeccCC-CcccccccCC
Q 015507 253 TVDAIVKASELPLSIVLVGVGDG-PWDMMKEFDD 285 (405)
Q Consensus 253 Ti~aIv~AS~lPLSIIiVGVGd~-~F~~M~~LDd 285 (405)
..+++.++...-+-|..||||+. +-+.|+.+-+
T Consensus 146 ~~~~~~~l~~~gv~i~~igiG~~~~~~~L~~iA~ 179 (281)
T 4hqf_A 146 SLKESRKLSDRGVKIAVFGIGQGINVAFNRFLVG 179 (281)
T ss_dssp HHHHHHHHHHTTCEEEEEEESSSCCHHHHHHHTT
T ss_pred HHHHHHHHHHCCCEEEEEeCCCccCHHHHHhhhC
Confidence 56666666677899999999985 5566666643
No 2
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.54 E-value=1.9e-07 Score=87.89 Aligned_cols=149 Identities=14% Similarity=0.263 Sum_probs=100.9
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHH-HHHHHHHhhhccccC---CCCccceEeecCCCCCCCCcccccC
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPY-EQAISIIGKTLAVFD---EDNLIPCYGFGDASTHDQDVFSFYS 176 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Y-qqAI~~Ig~vl~~yD---~D~~ip~yGFGa~~~~~~~vF~f~~ 176 (405)
+++++.||-|+||+. ..+ +++...+..++..|+ ++-.|-++.|+.... .+|.|+.
T Consensus 19 ~DivfvlD~SgSM~~------------------~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~---~~~~l~~ 77 (266)
T 4hqo_A 19 VDLYLLVDGSGSIGY------------------PNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTT---ELIRLGS 77 (266)
T ss_dssp EEEEEEEECSTTTCH------------------HHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEE---EEECTTS
T ss_pred eeEEEEEECCCCcCh------------------hHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcc---eEEecCC
Confidence 689999999999962 123 355666666677776 567889999998643 2344432
Q ss_pred CCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc---CCccEEEEEEeCCccccccccccCCCChhHHHH
Q 015507 177 GGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS---GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKT 253 (405)
Q Consensus 177 ~~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s---~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eT 253 (405)
. .-...+.++++-.++-......|.|+....|+.|.+..... .+.-.++|+||||..+| ...+
T Consensus 78 ~--~~~~~~~~~~~i~~l~~~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d------------~~~~ 143 (266)
T 4hqo_A 78 G--QSIDKRQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNS------------KYRA 143 (266)
T ss_dssp H--HHHCHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSC------------HHHH
T ss_pred C--CccCHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCC------------chHH
Confidence 1 11124455544444321224678999999999998887654 23457899999999875 3566
Q ss_pred HHHHHHhcCCCcEEEEEeccCCC-cccccccC
Q 015507 254 VDAIVKASELPLSIVLVGVGDGP-WDMMKEFD 284 (405)
Q Consensus 254 i~aIv~AS~lPLSIIiVGVGd~~-F~~M~~LD 284 (405)
.+++.++-+..+.|..||||+.. -+.|+++-
T Consensus 144 ~~~a~~l~~~gi~i~~iGiG~~~~~~~L~~iA 175 (266)
T 4hqo_A 144 LEVANKLKQRNVRLAVIGIGQGINHQFNRLIA 175 (266)
T ss_dssp HHHHHHHHHTTCEEEEEECSSSCCHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEecCcccCHHHHHHhh
Confidence 67777777788999999999853 34445554
No 3
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.40 E-value=2.4e-06 Score=74.20 Aligned_cols=147 Identities=14% Similarity=0.140 Sum_probs=93.9
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCc
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~ 180 (405)
+++++.||-|+||... + ....++++.+..-+ ..++-.+-++.|+..... ++.+..
T Consensus 8 ~div~vlD~SgSM~~~-----------~-----~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~~~~---~~~l~~---- 62 (185)
T 3n2n_F 8 FDLYFILDKSGSVLHH-----------W-----NEIYYFVEQLAHKF--ISPQLRMSFIVFSTRGTT---LMKLTE---- 62 (185)
T ss_dssp EEEEEEEECSGGGGGG-----------H-----HHHHHHHHHHHHHC--CCTTEEEEEEEESSSEEE---EEEEEC----
T ss_pred eeEEEEEeCCCChhhh-----------H-----HHHHHHHHHHHHHh--CCCCcEEEEEEEecCceE---EeccCC----
Confidence 6799999999999520 0 11233344443333 234668999999876432 344432
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHH--hcC--CccEEEEEEeCCccccccccccCCCChhHHHHHHH
Q 015507 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVE--QSG--GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDA 256 (405)
Q Consensus 181 ~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~--~s~--~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~a 256 (405)
..+.+.++-.+. ..+...|.|+....|+.+.+... ..+ ..-.++++||||..++.. .....++
T Consensus 63 --~~~~~~~~i~~l-~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~----------~~~~~~~ 129 (185)
T 3n2n_F 63 --DREQIRQGLEEL-QKVLPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDL----------FFYSERE 129 (185)
T ss_dssp --CHHHHHHHHHHH-HTCCCCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHH----------HHHHHHH
T ss_pred --CHHHHHHHHHHH-hhhcCCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCc----------ccchHHH
Confidence 344443333332 22235789999999999998652 222 245788999999987621 1234566
Q ss_pred HHHhcCCCcEEEEEeccCCCcccccccCC
Q 015507 257 IVKASELPLSIVLVGVGDGPWDMMKEFDD 285 (405)
Q Consensus 257 Iv~AS~lPLSIIiVGVGd~~F~~M~~LDd 285 (405)
+..+.+..+-|..||||+.+...|+++-+
T Consensus 130 ~~~~~~~gi~i~~igvg~~~~~~L~~iA~ 158 (185)
T 3n2n_F 130 ANRSRDLGAIVYAVGVKDFNETQLARIAD 158 (185)
T ss_dssp HHHHHHTTEEEEEEECSSCCHHHHTTTSS
T ss_pred HHHHHHCCCEEEEEEeccCCHHHHHHHhC
Confidence 66677788999999999877777777653
No 4
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=1.4e-06 Score=77.76 Aligned_cols=139 Identities=19% Similarity=0.258 Sum_probs=95.9
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCc
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~ 180 (405)
.++++.||.|+||...+ ..++..+.|...+..++..+. +..+-++.|+.... .++.+..
T Consensus 12 ~~iv~vlD~SgSM~~~d-------------~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~---~~~~~~~---- 70 (218)
T 3ibs_A 12 VEVIIALDISNSMLAQD-------------VQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAF---TQLPITS---- 70 (218)
T ss_dssp CEEEEEEECSGGGGCCS-------------SSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEE---EEEEEES----
T ss_pred CcEEEEEECCcCccccc-------------CCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCce---EeCCCCC----
Confidence 57999999999997421 124677888888888888776 55899999997632 2334432
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHh
Q 015507 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKA 260 (405)
Q Consensus 181 ~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~A 260 (405)
..+.+.+.-...-+.....|.|+....|+.|.+........-.++++||||..++. ...+++..+
T Consensus 71 --~~~~~~~~l~~l~~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~-------------~~~~~~~~~ 135 (218)
T 3ibs_A 71 --DYISAKMFLESISPSLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG-------------GAVEAAKAA 135 (218)
T ss_dssp --CHHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS-------------CHHHHHHHH
T ss_pred --CHHHHHHHHHhcCcccCCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC-------------cHHHHHHHH
Confidence 34444333333323344578999999999998776655444578899999987751 233455556
Q ss_pred cCCCcEEEEEeccCC
Q 015507 261 SELPLSIVLVGVGDG 275 (405)
Q Consensus 261 S~lPLSIIiVGVGd~ 275 (405)
.+..+.|..||||..
T Consensus 136 ~~~~i~v~~igig~~ 150 (218)
T 3ibs_A 136 AEKGIQVSVLGVGMP 150 (218)
T ss_dssp HTTTEEEEEEEESCT
T ss_pred HhcCCEEEEEEecCC
Confidence 677899999999984
No 5
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=98.32 E-value=4.1e-06 Score=73.53 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=90.2
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCC---CCccceEeecCCCCCCCCcccccCC
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDASTHDQDVFSFYSG 177 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~---D~~ip~yGFGa~~~~~~~vF~f~~~ 177 (405)
.+++++||-|+|++. ..++++...+..++..|+. .-.+-++.|+.... .+|.|+..
T Consensus 18 ~divfvlD~SgSm~~------------------~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~---~~~~l~~~ 76 (178)
T 2xgg_A 18 LDICFLIDSSGSIGI------------------QNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVH---LQWDLQSP 76 (178)
T ss_dssp EEEEEEEECCTTTCH------------------HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECTTSG
T ss_pred eeEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceE---EEEeCCCC
Confidence 689999999999952 2356777777777777763 36899999998643 23444321
Q ss_pred CCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHh-c----CCccEEEEEEeCCccccccccccCCCChhHHH
Q 015507 178 GRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQ-S----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQK 252 (405)
Q Consensus 178 ~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~-s----~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~e 252 (405)
.....+.++++-.++ + ...|.|+....|+.|.+.... . ...-.++++||||..++ ...
T Consensus 77 --~~~~~~~~~~~i~~l-~--~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~------------~~~ 139 (178)
T 2xgg_A 77 --NAVDKQLAAHAVLDM-P--YKKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDS------------DFR 139 (178)
T ss_dssp --GGSCHHHHHHHHHHC-C--CCCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCH------------HHH
T ss_pred --CccCHHHHHHHHHhC-C--CCCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCC------------Ccc
Confidence 111455555443332 2 156899999999999987432 1 12357889999999875 123
Q ss_pred HHHHHHHhcCCCcEEEEEeccCC
Q 015507 253 TVDAIVKASELPLSIVLVGVGDG 275 (405)
Q Consensus 253 Ti~aIv~AS~lPLSIIiVGVGd~ 275 (405)
..+++.++-+..+-|..||||+.
T Consensus 140 ~~~~~~~l~~~gi~v~~igvG~~ 162 (178)
T 2xgg_A 140 TVRAAKEIRELGGIVTVLAVGHY 162 (178)
T ss_dssp HSHHHHHHHHTTCEEEEEECC--
T ss_pred HHHHHHHHHHCCCEEEEEEcCCc
Confidence 44445555566899999999974
No 6
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.31 E-value=1.2e-06 Score=78.08 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=97.2
Q ss_pred eeceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCC
Q 015507 100 SSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (405)
Q Consensus 100 ~~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p 179 (405)
.++++++||.|+||... . .....+++..+..-+..++.+-.+-++.|+..... ++.| ..+
T Consensus 15 ~~div~vlD~SgSM~~~--------~-------~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~---~~~~--~~~ 74 (223)
T 1q0p_A 15 SMNIYLVLDGSDSIGAS--------N-------FTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKI---WVKV--SEA 74 (223)
T ss_dssp CEEEEEEEECSTTTCHH--------H-------HHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEE---EECT--TSG
T ss_pred ceeEEEEEeCCCCCchH--------H-------HHHHHHHHHHHHHHHhcCCCCceEEEEEecCccce---eecc--ccC
Confidence 36899999999999632 0 12234455555555556666678999999986432 2333 222
Q ss_pred ccCCHHHHHHHHHhhCCce-eecCCCChHHHHHHHHHHHHhcC--------CccEEEEEEeCCccccccccccCCCChhH
Q 015507 180 FCYGFEEVLSRYREIVPNL-KLAGPTSFAPVIEMAMSIVEQSG--------GQYHVLLIIADGQVTRSVDTVRGCLSPQE 250 (405)
Q Consensus 180 ~~~G~egVl~aYr~~l~~v-~LsGPT~FaPVI~~ai~i~~~s~--------~~Y~VLLIITDG~Itds~d~~~~~~~~d~ 250 (405)
.-...+.+.++-..+-+.. ...|.|+....|+.+.+...... ..-.++++||||..+... +.
T Consensus 75 ~~~~~~~~~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~---------~~ 145 (223)
T 1q0p_A 75 DSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG---------DP 145 (223)
T ss_dssp GGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSS---------CT
T ss_pred CCCCHHHHHHHHHhcccccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCC---------Ch
Confidence 2334555555444332211 24799999999999998876431 234788999999876311 12
Q ss_pred HHHHHHHHH----------hcCCCcEEEEEeccC-CCcccccccC
Q 015507 251 QKTVDAIVK----------ASELPLSIVLVGVGD-GPWDMMKEFD 284 (405)
Q Consensus 251 ~eTi~aIv~----------AS~lPLSIIiVGVGd-~~F~~M~~LD 284 (405)
....+.+.+ +.+..+-|..||||. .+...|+++-
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~~~~~~~L~~iA 190 (223)
T 1q0p_A 146 ITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALA 190 (223)
T ss_dssp HHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCCHHHHHHHS
T ss_pred HHHHHHHHHHHhhhhhhhhcccCCcEEEEEEecCcCCHHHHHHHh
Confidence 334444433 334678899999996 4666677664
No 7
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.29 E-value=1.8e-06 Score=74.75 Aligned_cols=147 Identities=13% Similarity=0.151 Sum_probs=94.4
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCc
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~ 180 (405)
.++++.||.|+||... .. ...+.+...+..++. .+-.+-++.|+..... ++.+.
T Consensus 7 ~dvv~vlD~SgSM~~~-----------~~----~~~~~~~~~~~~~~~---~~~~v~lv~f~~~~~~---~~~~~----- 60 (182)
T 1shu_X 7 FDLYFVLDKSGSVANN-----------WI----EIYNFVQQLAERFVS---PEMRLSFIVFSSQATI---ILPLT----- 60 (182)
T ss_dssp EEEEEEEECSGGGGGG-----------HH----HHHHHHHHHHHHCCC---TTEEEEEEEESSSEEE---EEEEE-----
T ss_pred eeEEEEEECCCCcccC-----------HH----HHHHHHHHHHHHhcC---CCceEEEEEeCCCceE---EECCC-----
Confidence 6899999999999521 00 111233333333332 5678999999875432 33443
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc--CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHH
Q 015507 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS--GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIV 258 (405)
Q Consensus 181 ~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s--~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv 258 (405)
.+.+.+.++-.. +..+...|.|+....|+.+.+..... ...-.++++||||..++. ......+++.
T Consensus 61 -~~~~~~~~~l~~-l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~----------~~~~~~~~~~ 128 (182)
T 1shu_X 61 -GDRGKISKGLED-LKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGL----------VPSYAEKEAK 128 (182)
T ss_dssp -CCHHHHHHHHHH-HHTCCCCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTT----------HHHHHHHHHH
T ss_pred -CCHHHHHHHHHh-cccCCCCCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCC----------CchhHHHHHH
Confidence 123333322222 22344678999999999999987654 234578899999987652 1233455666
Q ss_pred HhcCCCcEEEEEeccCCCcccccccCC
Q 015507 259 KASELPLSIVLVGVGDGPWDMMKEFDD 285 (405)
Q Consensus 259 ~AS~lPLSIIiVGVGd~~F~~M~~LDd 285 (405)
.+.+..+.|..||||+.+...|+++-+
T Consensus 129 ~~~~~~i~i~~igvg~~~~~~L~~ia~ 155 (182)
T 1shu_X 129 ISRSLGASVYCVGVLDFEQAQLERIAD 155 (182)
T ss_dssp HHHHTTCEEEEEECSSCCHHHHHHHSS
T ss_pred HHHhCCCEEEEEeCCcCCHHHHHHHhC
Confidence 667788999999999888777877753
No 8
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.27 E-value=1.8e-06 Score=88.53 Aligned_cols=151 Identities=11% Similarity=0.129 Sum_probs=103.2
Q ss_pred eeceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCC--
Q 015507 100 SSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSG-- 177 (405)
Q Consensus 100 ~~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~-- 177 (405)
.+++++.||.|+||.+. .+..+.|...+..++..+.++..|-++.|+..... ++++...
T Consensus 77 ~~dvv~VLD~SGSM~~~----------------~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~---~~p~t~~l~ 137 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYP----------------RTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARV---VYPTGGQLL 137 (464)
T ss_dssp CEEEEEEEECCGGGGTT----------------THHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEE---EESSSSSCE
T ss_pred CceEEEEEEcCcccCCC----------------CchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEE---EecCCcccc
Confidence 37899999999999631 24567777777777888878789999999876431 2332100
Q ss_pred CCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHH
Q 015507 178 GRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAI 257 (405)
Q Consensus 178 ~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aI 257 (405)
.....+.+.+ ++.+..+...|.|++..-|+.+.+...+..+.-.++|+||||..++. ....+...
T Consensus 138 ~~~~~~~~~l----~~~I~~L~~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~-----------~~~~l~~~ 202 (464)
T 4fx5_A 138 RADYQSRAAA----KEAVGRLHANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESE-----------TPADLARA 202 (464)
T ss_dssp ECSHHHHHHH----HHHHHTCCCCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTS-----------CHHHHHHH
T ss_pred cCCHHHHHHH----HHHHHcCCCCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCC-----------ChHHHHHH
Confidence 0001223333 33445566789999999999999988766555578899999997641 12334444
Q ss_pred HHhcCCCcEEEEEeccCC-CcccccccC
Q 015507 258 VKASELPLSIVLVGVGDG-PWDMMKEFD 284 (405)
Q Consensus 258 v~AS~lPLSIIiVGVGd~-~F~~M~~LD 284 (405)
.++....+.|..||||.. +.+.|++|-
T Consensus 203 ~~a~~~~i~i~tiGiG~~~d~~~L~~IA 230 (464)
T 4fx5_A 203 IQSSIGNFTADCRGIGEDWEPKELRKIA 230 (464)
T ss_dssp HHHHTTTCEEEEEEESSSSCHHHHHHHH
T ss_pred HHHhcCCCeEEEEEeCCccCHHHHHHHH
Confidence 556677899999999954 666677664
No 9
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.17 E-value=1.8e-06 Score=75.99 Aligned_cols=143 Identities=19% Similarity=0.288 Sum_probs=91.3
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhcccc-CCCCccceEeecCCCCCCCCcccccCCCC
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVF-DEDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~y-D~D~~ip~yGFGa~~~~~~~vF~f~~~~p 179 (405)
.++++.||-|+||.. ..++.++..+-.++..+ .++-.+-++.|+.... .++.++.
T Consensus 10 ~div~vlD~SgSM~~------------------~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~---~~~~~~~--- 65 (198)
T 1n3y_A 10 QDIVFLIDGSGSISS------------------RNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQ---THFTFEE--- 65 (198)
T ss_dssp EEEEEEEECCTTSCH------------------HHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEE---EEECHHH---
T ss_pred eeEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCcc---EEEecCc---
Confidence 679999999999952 12456666666677777 5778899999998642 1233321
Q ss_pred ccCCHHHHHHHHHhhCCcee-ecCCCChHHHHHHHHHH-HHhc----CCccEEEEEEeCCccc-cccccccCCCChhHHH
Q 015507 180 FCYGFEEVLSRYREIVPNLK-LAGPTSFAPVIEMAMSI-VEQS----GGQYHVLLIIADGQVT-RSVDTVRGCLSPQEQK 252 (405)
Q Consensus 180 ~~~G~egVl~aYr~~l~~v~-LsGPT~FaPVI~~ai~i-~~~s----~~~Y~VLLIITDG~It-ds~d~~~~~~~~d~~e 252 (405)
... .+...+.+..+. ..|.|+....|+.+.+. .... ...-.++++||||..+ +.. .
T Consensus 66 ----~~~-~~~~~~~i~~l~~~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~------------~ 128 (198)
T 1n3y_A 66 ----FRR-SSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSL------------D 128 (198)
T ss_dssp ----HHH-CSSGGGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSS------------C
T ss_pred ----cCC-HHHHHHHHhcCcCCCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcc------------c
Confidence 000 011123344443 67899999999999844 3332 2345788999999887 321 1
Q ss_pred HHHHHHHhcCCCcEEEEEeccCCC-----cccccccC
Q 015507 253 TVDAIVKASELPLSIVLVGVGDGP-----WDMMKEFD 284 (405)
Q Consensus 253 Ti~aIv~AS~lPLSIIiVGVGd~~-----F~~M~~LD 284 (405)
..+++..+.+..+-|..||||+.. ...|+++-
T Consensus 129 ~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA 165 (198)
T 1n3y_A 129 YKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIA 165 (198)
T ss_dssp HHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHS
T ss_pred HHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHH
Confidence 233444555678899999999864 45555553
No 10
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.14 E-value=7.4e-06 Score=72.10 Aligned_cols=142 Identities=13% Similarity=0.180 Sum_probs=93.6
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccC---CCCccceEeecCCCCCCCCcccccCC
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDASTHDQDVFSFYSG 177 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---~D~~ip~yGFGa~~~~~~~vF~f~~~ 177 (405)
++++++||-|+|++. +.++++...+..++..++ ++-.+-++.|+.... .+|.|+.
T Consensus 6 ~div~vlD~SgSm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~- 63 (189)
T 1atz_A 6 LDVILLLDGSSSFPA------------------SYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITT---IDVPWNV- 63 (189)
T ss_dssp EEEEEEEECSSSSCH------------------HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECTTC-
T ss_pred eeEEEEEeCCCCCCh------------------hhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcce---EEEecCC-
Confidence 689999999999952 235666666666777665 235799999987543 2344432
Q ss_pred CCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc-----CCccEEEEEEeCCccccccccccCCCChhHHH
Q 015507 178 GRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS-----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQK 252 (405)
Q Consensus 178 ~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s-----~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~e 252 (405)
....+.+.++-.++ +. ..|.|+....|+.|.+..... .+.-.++||||||+.++. ..+
T Consensus 64 ---~~~~~~~~~~i~~l-~~--~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~-----------~~~ 126 (189)
T 1atz_A 64 ---VPEKAHLLSLVDVM-QR--EGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDS-----------VDA 126 (189)
T ss_dssp ---CCCHHHHHHHHHTC-CC--CCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSC-----------CHH
T ss_pred ---CCCHHHHHHHHHhC-cC--CCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCch-----------HHH
Confidence 22455555544432 22 368899999999999887542 233567888999987652 234
Q ss_pred HHHHHHHhcCCCcEEEEEeccC-CCcccccccC
Q 015507 253 TVDAIVKASELPLSIVLVGVGD-GPWDMMKEFD 284 (405)
Q Consensus 253 Ti~aIv~AS~lPLSIIiVGVGd-~~F~~M~~LD 284 (405)
..+.+ .+..+-|..||||+ .+-..|+.+-
T Consensus 127 ~~~~~---~~~gi~v~~igvG~~~~~~~L~~iA 156 (189)
T 1atz_A 127 AADAA---RSNRVTVFPIGIGDRYDAAQLRILA 156 (189)
T ss_dssp HHHHH---HHTTEEEEEEEESSSSCHHHHHHHT
T ss_pred HHHHH---HHCCCEEEEEEcCCcCCHHHHHHHH
Confidence 44444 45688999999998 4555565553
No 11
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.09 E-value=9.3e-06 Score=72.78 Aligned_cols=145 Identities=10% Similarity=0.102 Sum_probs=93.4
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccC---CCCccceEeecCCCCCCCCcccccCC
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDASTHDQDVFSFYSG 177 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---~D~~ip~yGFGa~~~~~~~vF~f~~~ 177 (405)
+++++.||-|+|++. +.++++...+..++..|+ ++-.+-++.|+.... .+|.|+.
T Consensus 14 ~divfvlD~SgSm~~------------------~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~---~~~~l~~- 71 (202)
T 1ijb_A 14 LDLVFLLDGSSRLSE------------------AEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSH---AYIGLKD- 71 (202)
T ss_dssp EEEEEEEECBTTSCH------------------HHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEE---EEECTTC-
T ss_pred ccEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCce---EEEecCC-
Confidence 689999999999952 235677777777777777 455899999987642 2345532
Q ss_pred CCccCCHHHHHHHHHhhCCceeecC-CCChHHHHHHHHHHH-Hhc--CCccEEEEEEeCCccccccccccCCCChhHHHH
Q 015507 178 GRFCYGFEEVLSRYREIVPNLKLAG-PTSFAPVIEMAMSIV-EQS--GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKT 253 (405)
Q Consensus 178 ~p~~~G~egVl~aYr~~l~~v~LsG-PT~FaPVI~~ai~i~-~~s--~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eT 253 (405)
....+.+.++-.+ ++. .+| .|+....|+.+.+.. .+. ...-.++|+||||.-++. ..+..
T Consensus 72 ---~~~~~~~~~~i~~-l~~--~gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~----------~~~~~ 135 (202)
T 1ijb_A 72 ---RKRPSELRRIASQ-VKY--AGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQR----------MSRNF 135 (202)
T ss_dssp ---CCCHHHHHHHHHT-CCC--CCBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGG----------GCTTH
T ss_pred ---CCCHHHHHHHHHh-CcC--CCCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCcc----------chHHH
Confidence 1234555444332 221 245 499999999987543 221 234578999999987641 01123
Q ss_pred HHHHHHhcCCCcEEEEEeccC-CCccccccc
Q 015507 254 VDAIVKASELPLSIVLVGVGD-GPWDMMKEF 283 (405)
Q Consensus 254 i~aIv~AS~lPLSIIiVGVGd-~~F~~M~~L 283 (405)
.+++.++-+..+-|..||||+ .+.+.|+.+
T Consensus 136 ~~~a~~l~~~gi~i~~igvG~~~~~~~L~~i 166 (202)
T 1ijb_A 136 VRYVQGLKKKKVIVIPVGIGPHANLKQIRLI 166 (202)
T ss_dssp HHHHHHHHHTTEEEEEEEESTTSCHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEecCCcCCHHHHHHH
Confidence 344444455789999999996 466666666
No 12
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.07 E-value=6.3e-06 Score=83.28 Aligned_cols=154 Identities=16% Similarity=0.176 Sum_probs=99.1
Q ss_pred eeceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhcccc---CCCCccceEeecCCCCCCCCcccccC
Q 015507 100 SSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVF---DEDNLIPCYGFGDASTHDQDVFSFYS 176 (405)
Q Consensus 100 ~~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~y---D~D~~ip~yGFGa~~~~~~~vF~f~~ 176 (405)
.++++++||-|+||+. ..+++|.+.+..++..+ ..+-.+-++.|+..... +|.+.
T Consensus 9 ~~divfvlD~SgSM~~------------------~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~---~~~l~- 66 (509)
T 2odp_A 9 HLNLYLLLDASQSVSE------------------NDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKV---LMSVL- 66 (509)
T ss_dssp EEEEEEEEECSTTSCH------------------HHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEE---EECTT-
T ss_pred CeeEEEEEeCCCccch------------------hhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCce---eEecc-
Confidence 4789999999999952 12456666666665555 67889999999875432 33432
Q ss_pred CCCccCCHHHHHHHHHhhCCceee-cCCCChHHHHHHHHHHHHhcC-----------CccEEEEEEeCCccccccccccC
Q 015507 177 GGRFCYGFEEVLSRYREIVPNLKL-AGPTSFAPVIEMAMSIVEQSG-----------GQYHVLLIIADGQVTRSVDTVRG 244 (405)
Q Consensus 177 ~~p~~~G~egVl~aYr~~l~~v~L-sGPT~FaPVI~~ai~i~~~s~-----------~~Y~VLLIITDG~Itds~d~~~~ 244 (405)
.+.-...+.++++-.++-..... .|.|+....|+.|.+..+... ..-.++++||||.-++..
T Consensus 67 -~~~~~~~~~~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~----- 140 (509)
T 2odp_A 67 -NDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGG----- 140 (509)
T ss_dssp -SGGGGCHHHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSS-----
T ss_pred -CCCCCCHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCC-----
Confidence 11222455555444332211111 388999999999998764321 123788999999877522
Q ss_pred CCChhHHHHHHHHHHh------cCCCcEEEEEeccC--CCcccccccCC
Q 015507 245 CLSPQEQKTVDAIVKA------SELPLSIVLVGVGD--GPWDMMKEFDD 285 (405)
Q Consensus 245 ~~~~d~~eTi~aIv~A------S~lPLSIIiVGVGd--~~F~~M~~LDd 285 (405)
+..+..+.+.+. .+..+-|..||||+ .+...|++|-.
T Consensus 141 ----~~~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~ 185 (509)
T 2odp_A 141 ----SPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGS 185 (509)
T ss_dssp ----CTHHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSC
T ss_pred ----ChhHHHHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhcc
Confidence 134455555542 26678899999998 57888887754
No 13
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=2.2e-05 Score=75.89 Aligned_cols=162 Identities=10% Similarity=0.141 Sum_probs=109.8
Q ss_pred eEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhcc---ccCCCCccceEeecCCCCCCCCcccccCCCC
Q 015507 103 LIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLA---VFDEDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (405)
Q Consensus 103 liVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~---~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p 179 (405)
++|+||.|.||... +-.+|-++.+...+-.++. .-+....+-+..|+...... +.++.
T Consensus 6 tViviD~S~SM~~~-------------D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~v--l~plT---- 66 (268)
T 4b4t_W 6 TVLVIDNSEYSRNG-------------DFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRV--LSTFT---- 66 (268)
T ss_dssp EEEEECCSSTTSST-------------TSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEE--EEEEE----
T ss_pred EEEEEECCHHHhCC-------------CCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCccee--ccCCc----
Confidence 78999999999532 1135677766665555555 44556789999997653211 11221
Q ss_pred ccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc--CCccEEEEEEeCCccccccccccCCCChhHHHHHHHH
Q 015507 180 FCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS--GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAI 257 (405)
Q Consensus 180 ~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s--~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aI 257 (405)
.....++ ..+..++..|-|++..-|+.|...++.. ...-..+||++||.+++ +.++.++++
T Consensus 67 --~D~~~il----~aL~~l~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~-----------~~~~l~~la 129 (268)
T 4b4t_W 67 --AEFGKIL----AGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD-----------SRDELIRLA 129 (268)
T ss_dssp --SCHHHHH----HHHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSS-----------CHHHHHHHH
T ss_pred --chHHHHH----HHhhhcCcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCC-----------CHHHHHHHH
Confidence 2344444 3456778899999999999999998754 23345568888998775 367888889
Q ss_pred HHhcCCCcEEEEEeccCCC--cccccccCCCCCCccccceecccc
Q 015507 258 VKASELPLSIVLVGVGDGP--WDMMKEFDDNIPARAFDNFQFVNF 300 (405)
Q Consensus 258 v~AS~lPLSIIiVGVGd~~--F~~M~~LDd~l~~R~rDNvQFV~f 300 (405)
.++.+.-|+|-+||+|.++ -+.|++|=+...+..-|+-+||..
T Consensus 130 k~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v 174 (268)
T 4b4t_W 130 KTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTV 174 (268)
T ss_dssp HHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEE
T ss_pred HHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEe
Confidence 9999999999999999754 455677633233323477777765
No 14
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.03 E-value=6.9e-07 Score=78.37 Aligned_cols=152 Identities=14% Similarity=0.196 Sum_probs=89.9
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccc-cCCCCccceEeecCCCCCCCCcccccCCCC
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV-FDEDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~-yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p 179 (405)
.++++.||.|+||. | +..+.|...+..++.. +..+..+-++.|+..... .++.+.
T Consensus 6 ~~vv~vlD~SgSM~--~----------------~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~--~~~~~~---- 61 (189)
T 2x31_A 6 RVLIFAVDASGSAA--V----------------ARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQ--VLLQPS---- 61 (189)
T ss_dssp CEEEEEEECCTTSC--C------------------CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCC--BCTTTC----
T ss_pred eEEEEEEECCCCCC--c----------------hHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCce--EecCCC----
Confidence 57899999999994 1 1124444444444433 367778999999963221 122221
Q ss_pred ccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC--CccEEEEEEeCCccccccccccCCCChh-HHHHHHH
Q 015507 180 FCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG--GQYHVLLIIADGQVTRSVDTVRGCLSPQ-EQKTVDA 256 (405)
Q Consensus 180 ~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~--~~Y~VLLIITDG~Itds~d~~~~~~~~d-~~eTi~a 256 (405)
...+.+.+. +..+...|.|++...|+.+.+..++.. +.-.++++||||..++..+.... ..+ .++..++
T Consensus 62 --~~~~~~~~~----i~~l~~~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~--~~~~~~~~~~~ 133 (189)
T 2x31_A 62 --RSLTQTKRQ----LQGLPGGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTAN--RELAGEQATKV 133 (189)
T ss_dssp --SCHHHHHHH----HHHCCCCBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHH--HGGGTCCCEEE
T ss_pred --CCHHHHHHH----HhcCCCCCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCcccc--ccchhHHHHHH
Confidence 245554433 333456799999999999999887642 23568899999987753210000 000 0011122
Q ss_pred HHHhcCCCcEEEEEeccCCCcccccccC
Q 015507 257 IVKASELPLSIVLVGVGDGPWDMMKEFD 284 (405)
Q Consensus 257 Iv~AS~lPLSIIiVGVGd~~F~~M~~LD 284 (405)
+..+.+..+.|+.||+|+.+...|++|-
T Consensus 134 ~~~~~~~gi~v~~ig~g~~~~~~L~~iA 161 (189)
T 2x31_A 134 ARAIRASGMPAVIIDTAMRPNPALVDLA 161 (189)
T ss_dssp EECTGGGGSCCTHHHHHHSSCSSSCSTT
T ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHH
Confidence 2233345678888999988777777664
No 15
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.02 E-value=3.3e-05 Score=69.97 Aligned_cols=132 Identities=18% Similarity=0.241 Sum_probs=88.6
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccC---CCCccceEeecCCCCCCCCcccccCC
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDASTHDQDVFSFYSG 177 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---~D~~ip~yGFGa~~~~~~~vF~f~~~ 177 (405)
++++++||-|+||.. ++++...+..++..++ ++-.+-++.|+.... .+|.|+
T Consensus 23 ~div~vlD~SgSM~~--------------------~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~---~~~~l~-- 77 (223)
T 2b2x_A 23 LDIVIVLDGSNSIYP--------------------WESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFNLN-- 77 (223)
T ss_dssp EEEEEEEECSTTCCC--------------------HHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEE---EEECTT--
T ss_pred ceEEEEEECCCChhh--------------------HHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCcc---EEEecC--
Confidence 689999999999940 4666666667777775 577899999987543 234442
Q ss_pred CCccCCHHHHHHHHHhhCCcee-ecC-CCChHHHHHHHHHH-HHh----cCCccEEEEEEeCCccccccccccCCCChhH
Q 015507 178 GRFCYGFEEVLSRYREIVPNLK-LAG-PTSFAPVIEMAMSI-VEQ----SGGQYHVLLIIADGQVTRSVDTVRGCLSPQE 250 (405)
Q Consensus 178 ~p~~~G~egVl~aYr~~l~~v~-LsG-PT~FaPVI~~ai~i-~~~----s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~ 250 (405)
+ ....+.++++-. .+. ..| .|+....|+.|.+. ... ....-.++++||||.-++..
T Consensus 78 ~--~~~~~~~~~~i~----~l~~~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~----------- 140 (223)
T 2b2x_A 78 K--YSSTEEVLVAAN----KIVQRGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNY----------- 140 (223)
T ss_dssp T--CCSHHHHHHHHT----TCCCCCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGG-----------
T ss_pred C--CCCHHHHHHHHH----hhhccCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc-----------
Confidence 1 234555554433 333 345 49999999999876 321 12345788999999987621
Q ss_pred HHHHHHHHHhcCCCcEEEEEeccCC
Q 015507 251 QKTVDAIVKASELPLSIVLVGVGDG 275 (405)
Q Consensus 251 ~eTi~aIv~AS~lPLSIIiVGVGd~ 275 (405)
...+++..+.+..+-|..||||+.
T Consensus 141 -~~~~~~~~~~~~gi~v~~igvG~~ 164 (223)
T 2b2x_A 141 -RLKQVIQDCEDENIQRFSIAILGH 164 (223)
T ss_dssp -GHHHHHHHHHTTTEEEEEEEECGG
T ss_pred -cHHHHHHHHHHCCCEEEEEEecCc
Confidence 233444555567899999999974
No 16
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.02 E-value=4.2e-05 Score=69.63 Aligned_cols=162 Identities=13% Similarity=0.177 Sum_probs=105.0
Q ss_pred ceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhcccc---CCCCccceEeecCCCCCCCCcccccCCC
Q 015507 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVF---DEDNLIPCYGFGDASTHDQDVFSFYSGG 178 (405)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~y---D~D~~ip~yGFGa~~~~~~~vF~f~~~~ 178 (405)
.++++||.|.||... +-.+|..+.|...+-.++..| .....+-+..|++...+. +.+++.
T Consensus 4 ~lvlvlD~S~SM~~~-------------D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~--~~plT~-- 66 (192)
T 2x5n_A 4 ATMILIDNSEWMING-------------DYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQV--LSTLTR-- 66 (192)
T ss_dssp EEEEEECCSGGGGCT-------------TSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCE--EEEEES--
T ss_pred EEEEEEECCHhhccC-------------CCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEE--ecCCCC--
Confidence 589999999999632 113678888877776655544 445689999998753321 223321
Q ss_pred CccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC--Ccc-EEEEEEeCCccccccccccCCCChhHHHHHH
Q 015507 179 RFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG--GQY-HVLLIIADGQVTRSVDTVRGCLSPQEQKTVD 255 (405)
Q Consensus 179 p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~--~~Y-~VLLIITDG~Itds~d~~~~~~~~d~~eTi~ 255 (405)
..+.++ +.+..+...|.|++..-|+.|.+..++.. ... -|+|+++|+. ++ +..+..+
T Consensus 67 ----d~~~i~----~~L~~l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~-~~-----------~~~~~~~ 126 (192)
T 2x5n_A 67 ----DYGKFL----SAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPI-VE-----------DEKNLIR 126 (192)
T ss_dssp ----CHHHHH----HHHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCC-SS-----------CHHHHHH
T ss_pred ----CHHHHH----HHHHcCCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCC-CC-----------CchhHHH
Confidence 244444 34444677899999999999999887643 223 3445555544 32 2566677
Q ss_pred HHHHhcCCCcEEEEEeccCCCccc-ccccCCCCCCccccceecccchh
Q 015507 256 AIVKASELPLSIVLVGVGDGPWDM-MKEFDDNIPARAFDNFQFVNFTE 302 (405)
Q Consensus 256 aIv~AS~lPLSIIiVGVGd~~F~~-M~~LDd~l~~R~rDNvQFV~f~d 302 (405)
++..+.+.-+.|.+||+|..+... |+.|=+... .-||-+||...+
T Consensus 127 ~a~~lk~~gi~v~~Ig~G~~~~~~~l~~la~~~n--~~~~s~~~~~~~ 172 (192)
T 2x5n_A 127 LAKRMKKNNVAIDIIHIGELQNESALQHFIDAAN--SSDSCHLVSIPP 172 (192)
T ss_dssp HHHHHHHTTEEEEEEEESCC---CHHHHHHHHHC--STTCCEEEEECC
T ss_pred HHHHHHHCCCEEEEEEeCCCCccHHHHHHHHhcc--CCCceEEEEecC
Confidence 788888899999999999876532 777643222 137888886544
No 17
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=97.97 E-value=4.5e-05 Score=68.45 Aligned_cols=132 Identities=16% Similarity=0.226 Sum_probs=87.6
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccC---CCCccceEeecCCCCCCCCcccccCC
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDASTHDQDVFSFYSG 177 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---~D~~ip~yGFGa~~~~~~~vF~f~~~ 177 (405)
+.++++||-|+||.. ++.+...+..++..++ ++-.+-++.|+.... .+|+|.
T Consensus 8 ~div~vlD~SgSm~~--------------------~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~---~~~~l~-- 62 (213)
T 1pt6_A 8 LDIVIVLDGSNSIYP--------------------WDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFNLN-- 62 (213)
T ss_dssp EEEEEEEECCTTCCC--------------------HHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEE---EEECTT--
T ss_pred ccEEEEEECCCChhh--------------------HHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCcc---EEEecc--
Confidence 679999999999940 3555555666666665 678899999997542 234442
Q ss_pred CCccCCHHHHHHHHHhhCCcee-ecC-CCChHHHHHHHHHHH-Hh----cCCccEEEEEEeCCccccccccccCCCChhH
Q 015507 178 GRFCYGFEEVLSRYREIVPNLK-LAG-PTSFAPVIEMAMSIV-EQ----SGGQYHVLLIIADGQVTRSVDTVRGCLSPQE 250 (405)
Q Consensus 178 ~p~~~G~egVl~aYr~~l~~v~-LsG-PT~FaPVI~~ai~i~-~~----s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~ 250 (405)
.....+.++++-.. +. ..| .|+....|+.|.+.. .. ....-.++++||||.-++.
T Consensus 63 --~~~~~~~~~~~i~~----l~~~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~------------ 124 (213)
T 1pt6_A 63 --KYSSTEEVLVAAKK----IVQRGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDN------------ 124 (213)
T ss_dssp --TCSSHHHHHHHHHT----CCCCCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCS------------
T ss_pred --ccCCHHHHHHHHHh----ccCCCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC------------
Confidence 12345566554443 22 356 499999999998763 31 1234578899999988762
Q ss_pred HHHHHHHHHhcCCCcEEEEEeccCC
Q 015507 251 QKTVDAIVKASELPLSIVLVGVGDG 275 (405)
Q Consensus 251 ~eTi~aIv~AS~lPLSIIiVGVGd~ 275 (405)
....+++.++.+..+-|..||||+.
T Consensus 125 ~~~~~~~~~~~~~gi~i~~igig~~ 149 (213)
T 1pt6_A 125 HRLKKVIQDCEDENIQRFSIAILGS 149 (213)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEECHH
T ss_pred ccHHHHHHHHHHCCCEEEEEEeccc
Confidence 1334445555567889999999963
No 18
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.95 E-value=2.8e-05 Score=81.91 Aligned_cols=157 Identities=15% Similarity=0.104 Sum_probs=96.3
Q ss_pred eeceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCC
Q 015507 100 SSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (405)
Q Consensus 100 ~~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p 179 (405)
.++++++||-|+||+.. . .....+++..+..-|..++..-.|-++-|+.... .++.|+. .
T Consensus 243 ~~div~vlD~SgSM~~~--------~-------~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~--~ 302 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGAS--------D-------FTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVSE--A 302 (741)
T ss_dssp EEEEEEEEECSTTTCHH--------H-------HHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE---EEECTTS--G
T ss_pred ceeEEEEeccCCccccc--------c-------hHHHHHHHHHHHHhhhccCCCceEEEEEeccCCc---eeEeecc--c
Confidence 36899999999999521 0 1123444555555455555566799999987542 2334432 1
Q ss_pred ccCCHHHHHHHHHhhCCce-eecCCCChHHHHHHHHHHHHh--------cCCccEEEEEEeCCccccccccccCCCChhH
Q 015507 180 FCYGFEEVLSRYREIVPNL-KLAGPTSFAPVIEMAMSIVEQ--------SGGQYHVLLIIADGQVTRSVDTVRGCLSPQE 250 (405)
Q Consensus 180 ~~~G~egVl~aYr~~l~~v-~LsGPT~FaPVI~~ai~i~~~--------s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~ 250 (405)
.-...+.++++-.++-... ...|-|+....|+.|.+.... ....-.|+|+||||.-+.-. +-
T Consensus 303 ~~~~~~~~~~~i~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~---------~p 373 (741)
T 3hrz_D 303 DSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG---------DP 373 (741)
T ss_dssp GGGCHHHHHHHHTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSS---------CT
T ss_pred CCcCHHHHHHHHHhcccccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCC---------Cc
Confidence 1234555554443322111 167899999999999988721 11234788999999766311 13
Q ss_pred HHHHHHHH----------HhcCCCcEEEEEeccC-CCcccccccCC
Q 015507 251 QKTVDAIV----------KASELPLSIVLVGVGD-GPWDMMKEFDD 285 (405)
Q Consensus 251 ~eTi~aIv----------~AS~lPLSIIiVGVGd-~~F~~M~~LDd 285 (405)
...++.|. ++.+..+-|..||||+ .+.+.|++|-.
T Consensus 374 ~~~~~~i~~~~~~~~~a~~~~~~gi~i~~igvG~~~~~~~L~~ia~ 419 (741)
T 3hrz_D 374 ITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 419 (741)
T ss_dssp HHHHHHHHHHTTCSSCTTCCCGGGEEEEEEECSSSCCHHHHHHHSC
T ss_pred hHHHHHHHHHhhcccccccccccCeeEEEEeCCCcCCHHHHHHHhc
Confidence 44555555 3345678999999997 56667776643
No 19
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.92 E-value=2e-06 Score=75.94 Aligned_cols=143 Identities=17% Similarity=0.204 Sum_probs=90.0
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccC-CCCccceEeecCCCCCCCCcccccCCCC
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD-EDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD-~D~~ip~yGFGa~~~~~~~vF~f~~~~p 179 (405)
+++++.||-|+|++. ..++++...+..++..++ ++-.+-++.|+.... .+|.|+...
T Consensus 6 ~div~vlD~SgSm~~------------------~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~---~~~~l~~~~- 63 (194)
T 1mf7_A 6 SDIAFLIDGSGSIIP------------------HDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFR---IHFTFKEFQ- 63 (194)
T ss_dssp EEEEEEEECCTTSCH------------------HHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEE---EEECHHHHH-
T ss_pred eeEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCce---EEEecCCcC-
Confidence 689999999999952 135666666666777775 345899999987643 234442100
Q ss_pred ccCCHHHHHHHHHhhCCcee-ecCCCChHHHHHHHHHHH-Hh-c---CCccEEEEEEeCCccc-cccccccCCCChhHHH
Q 015507 180 FCYGFEEVLSRYREIVPNLK-LAGPTSFAPVIEMAMSIV-EQ-S---GGQYHVLLIIADGQVT-RSVDTVRGCLSPQEQK 252 (405)
Q Consensus 180 ~~~G~egVl~aYr~~l~~v~-LsGPT~FaPVI~~ai~i~-~~-s---~~~Y~VLLIITDG~It-ds~d~~~~~~~~d~~e 252 (405)
....+ . +.+..+. ..|.|+....|+.|.+.. .. . .+.-.++++||||..+ |..+ ..
T Consensus 64 ~~~~~---~----~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~---------~~- 126 (194)
T 1mf7_A 64 NNPNP---R----SLVKPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLG---------YE- 126 (194)
T ss_dssp HSCCH---H----HHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSC---------GG-
T ss_pred CHHHH---H----HHHHhCcCCCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchh---------hH-
Confidence 00112 2 2233444 479999999999998643 22 1 1235788999999987 4211 12
Q ss_pred HHHHHHHhcCCCcEEEEEeccCCC-----cccccccC
Q 015507 253 TVDAIVKASELPLSIVLVGVGDGP-----WDMMKEFD 284 (405)
Q Consensus 253 Ti~aIv~AS~lPLSIIiVGVGd~~-----F~~M~~LD 284 (405)
+++.++-+..+-|..||||+.. .+.|+++-
T Consensus 127 --~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA 161 (194)
T 1mf7_A 127 --DVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIA 161 (194)
T ss_dssp --GTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHS
T ss_pred --HHHHHHHHCCCEEEEEEecccccccccHHHHHHHh
Confidence 2334445578999999999853 45555553
No 20
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=97.90 E-value=3e-05 Score=77.83 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=97.3
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhcc---ccCCCCccceEeecCCCCCCCCcccccCC
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLA---VFDEDNLIPCYGFGDASTHDQDVFSFYSG 177 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~---~yD~D~~ip~yGFGa~~~~~~~vF~f~~~ 177 (405)
++++++||-|+||+. +.++.|...+..++. .+..+-.+-++.|+..... ++.| .
T Consensus 2 ~div~vlD~SgSM~~------------------~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~---~~~~--~ 58 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGA------------------SNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKI---WVKV--S 58 (497)
T ss_dssp EEEEEEEECSTTTCH------------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEE---EECT--T
T ss_pred eeEEEEEECCCCcch------------------hhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceE---eecc--c
Confidence 578999999999952 234555444444444 4555778999999975421 2333 2
Q ss_pred CCccCCHHHHHHHHHhhCCce-eecCCCChHHHHHHHHHHHHhc--------CCccEEEEEEeCCccccccccccCCCCh
Q 015507 178 GRFCYGFEEVLSRYREIVPNL-KLAGPTSFAPVIEMAMSIVEQS--------GGQYHVLLIIADGQVTRSVDTVRGCLSP 248 (405)
Q Consensus 178 ~p~~~G~egVl~aYr~~l~~v-~LsGPT~FaPVI~~ai~i~~~s--------~~~Y~VLLIITDG~Itds~d~~~~~~~~ 248 (405)
.+.-...+.++++-.++-+.- ...|.|+....|+.|.+..... ...-.++++||||.-++..
T Consensus 59 ~~~~~~~~~~~~~l~~l~~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~--------- 129 (497)
T 1rrk_A 59 EADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG--------- 129 (497)
T ss_dssp SGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSS---------
T ss_pred cccccCHHHHHHHHHhCcCccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCC---------
Confidence 233345666665555443221 2568899999999999887321 1234688999999877421
Q ss_pred hHHHHHHHHHHhc----------CCCcEEEEEeccC-CCcccccccCC
Q 015507 249 QEQKTVDAIVKAS----------ELPLSIVLVGVGD-GPWDMMKEFDD 285 (405)
Q Consensus 249 d~~eTi~aIv~AS----------~lPLSIIiVGVGd-~~F~~M~~LDd 285 (405)
+..+..+.+.+.. +..+-|..||||+ .+...|++|-.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~igvG~~~~~~~L~~iA~ 177 (497)
T 1rrk_A 130 DPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 177 (497)
T ss_dssp CTHHHHHHHHHHTTCSSCC-CCCGGGEEEEEEECSSSCCHHHHHHHSC
T ss_pred ChhHHHHHHHHHhhhhcccccchhcCeeEEEecCCCccCHHHHHHHhc
Confidence 1345555665541 2278899999997 46667777653
No 21
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=97.79 E-value=0.0002 Score=63.56 Aligned_cols=131 Identities=14% Similarity=0.128 Sum_probs=88.0
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccC---CCCccceEeecCCCCCCCCcccccCC
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDASTHDQDVFSFYSG 177 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---~D~~ip~yGFGa~~~~~~~vF~f~~~ 177 (405)
++++++||-|+||.. ++++...+..++..++ ++-.+-++.|+.... .+|+|+
T Consensus 7 ~div~vlD~SgSm~~--------------------~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~---~~~~l~-- 61 (200)
T 1v7p_C 7 IDVVVVCDESNSIYP--------------------WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPR---VVFNLN-- 61 (200)
T ss_dssp EEEEEEEECCTTCCC--------------------HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEE---EEECTT--
T ss_pred ccEEEEEECCCCccc--------------------HHHHHHHHHHHHHhcCCCCCceEEEEEEECCCce---EEEeCC--
Confidence 689999999999940 4666666667777776 577899999987642 244554
Q ss_pred CCccCCHHHHHHHHHhhCCceee-cC-CCChHHHHHHHHHH-HHhc----CCccEEEEEEeCCccccccccccCCCChhH
Q 015507 178 GRFCYGFEEVLSRYREIVPNLKL-AG-PTSFAPVIEMAMSI-VEQS----GGQYHVLLIIADGQVTRSVDTVRGCLSPQE 250 (405)
Q Consensus 178 ~p~~~G~egVl~aYr~~l~~v~L-sG-PT~FaPVI~~ai~i-~~~s----~~~Y~VLLIITDG~Itds~d~~~~~~~~d~ 250 (405)
+ ....+.++++-.+ +.. .| .|+....|+.|.+. .... ...-.++|+||||.-++..
T Consensus 62 ~--~~~~~~~~~~i~~----l~~~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~----------- 124 (200)
T 1v7p_C 62 T--YKTKEEMIVATSQ----TSQYGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGS----------- 124 (200)
T ss_dssp T--CSSHHHHHHHHHH----CCCCCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGG-----------
T ss_pred C--cCCHHHHHHHHHh----hhccCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcc-----------
Confidence 1 2355666655443 332 35 59999999999885 3321 2345788999999987621
Q ss_pred HHHHHHHHHhcCCCcEEEEEeccC
Q 015507 251 QKTVDAIVKASELPLSIVLVGVGD 274 (405)
Q Consensus 251 ~eTi~aIv~AS~lPLSIIiVGVGd 274 (405)
...+++.++.+..+-|..||||+
T Consensus 125 -~~~~~~~~~~~~gi~i~~igvg~ 147 (200)
T 1v7p_C 125 -MLKAVIDQCNHDNILRFGIAVLG 147 (200)
T ss_dssp -GHHHHHHHHHHTTEEEEEEEECH
T ss_pred -cHHHHHHHHHHCCCEEEEEEecc
Confidence 12234444556789999999963
No 22
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.55 E-value=0.00012 Score=65.38 Aligned_cols=138 Identities=10% Similarity=0.169 Sum_probs=90.9
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccC---CCCccceEeecCCCCCCCCcccccCC
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDASTHDQDVFSFYSG 177 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---~D~~ip~yGFGa~~~~~~~vF~f~~~ 177 (405)
+++++.||-|+|++. +.++++...+-.++..|+ ++-.|-++.|+.... .+|.|+.
T Consensus 22 ~DivfvlD~S~Sm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~---~~~~l~~- 79 (199)
T 3zqk_A 22 LDVAFVLEGSDKIGE------------------ADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVT---VEYPFSE- 79 (199)
T ss_dssp CEEEEEEECCTTTCH------------------HHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEE---EEECTTS-
T ss_pred cCEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCccc---EEEecCC-
Confidence 689999999999952 235666666666777774 667899999998643 2345531
Q ss_pred CCccCCHHHHHHHHHhhCCceeecC-CCChHHHHHHHHHHH-Hh-c---CCccEEEEEEeCCccccccccccCCCChhHH
Q 015507 178 GRFCYGFEEVLSRYREIVPNLKLAG-PTSFAPVIEMAMSIV-EQ-S---GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQ 251 (405)
Q Consensus 178 ~p~~~G~egVl~aYr~~l~~v~LsG-PT~FaPVI~~ai~i~-~~-s---~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~ 251 (405)
....+.++++-.++ +. ..| -|+....|+.+.+.. .. . .+.-.|+++||||...|.+.
T Consensus 80 ---~~~~~~~~~~i~~l-~~--~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~----------- 142 (199)
T 3zqk_A 80 ---AQSKGDILQRLREI-RY--QGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIK----------- 142 (199)
T ss_dssp ---CCCHHHHHHHHHHC-CC--CCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCC-----------
T ss_pred ---cCCHHHHHHHHHhC-cC--CCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHH-----------
Confidence 23455665554442 21 345 399999998887642 21 1 12347899999998766321
Q ss_pred HHHHHHHHhcCCCcEEEEEecc-CCCcccccccCC
Q 015507 252 KTVDAIVKASELPLSIVLVGVG-DGPWDMMKEFDD 285 (405)
Q Consensus 252 eTi~aIv~AS~lPLSIIiVGVG-d~~F~~M~~LDd 285 (405)
++ ...+-|.-|||| +.+.+.|+++-.
T Consensus 143 -------~~-~~~v~v~~iGiG~~~~~~~L~~iA~ 169 (199)
T 3zqk_A 143 -------RL-PGDIQVVPIGVGPNANVQELERIGW 169 (199)
T ss_dssp -------CC-CTTEEEEEEEESTTCCHHHHHHHHT
T ss_pred -------HH-hCCCEEEEEEcCCCCCHHHHHHHhC
Confidence 01 256889999999 667788887753
No 23
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.29 E-value=0.00039 Score=78.37 Aligned_cols=142 Identities=18% Similarity=0.276 Sum_probs=94.5
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCC-CccceEeecCCCCCCCCcccccC--C
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDED-NLIPCYGFGDASTHDQDVFSFYS--G 177 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D-~~ip~yGFGa~~~~~~~vF~f~~--~ 177 (405)
++++++||-|+|++ .+.++++...+..++..|+.+ -.|-+..|+.... .+|.|+. +
T Consensus 131 ~DIvfvlD~SgSm~------------------~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~---~~~~lt~~~~ 189 (1095)
T 3k6s_A 131 QDIVFLIDGSGSIS------------------SRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQ---THFTFEEFRR 189 (1095)
T ss_dssp EEEEEEEECCTTSC------------------SHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEE---EEECSHHHHS
T ss_pred ccEEEEEcCCCCCC------------------hhHHHHHHHHHHHHHHhccccccEEEEEEECCeEE---EEecCcccCC
Confidence 68999999999995 234677888888888888865 5899999987643 2344431 1
Q ss_pred CCccCCHHHHHHHHHhhCCce-eecCCCChHHHHHHHHHHH-Hhc----CCccEEEEEEeCCccc-cccccccCCCChhH
Q 015507 178 GRFCYGFEEVLSRYREIVPNL-KLAGPTSFAPVIEMAMSIV-EQS----GGQYHVLLIIADGQVT-RSVDTVRGCLSPQE 250 (405)
Q Consensus 178 ~p~~~G~egVl~aYr~~l~~v-~LsGPT~FaPVI~~ai~i~-~~s----~~~Y~VLLIITDG~It-ds~d~~~~~~~~d~ 250 (405)
...+ .+++..+ .+.|-|+.+.-|+.|.+.+ ... .+.-.|+|+||||..+ |.
T Consensus 190 ~~~l----------~~ai~~i~~~gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~------------ 247 (1095)
T 3k6s_A 190 SSNP----------LSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDS------------ 247 (1095)
T ss_dssp CSCG----------GGGTTTCCCCCSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCS------------
T ss_pred HHHH----------HHHHhhhhcccCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCc------------
Confidence 1111 2233344 4678999999999997754 221 1234789999999984 32
Q ss_pred HHHHHHHHHhcCCCcEEEEEeccCC-----CcccccccCC
Q 015507 251 QKTVDAIVKASELPLSIVLVGVGDG-----PWDMMKEFDD 285 (405)
Q Consensus 251 ~eTi~aIv~AS~lPLSIIiVGVGd~-----~F~~M~~LDd 285 (405)
....+++.+|-+.-+-|..||||+. +.+.|+++-+
T Consensus 248 ~~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs 287 (1095)
T 3k6s_A 248 LDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIAS 287 (1095)
T ss_dssp SCHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSC
T ss_pred hhHHHHHHHHHHCCCEEEEEecccccccccCHHHHHHHHc
Confidence 1223444444455788999999986 6666766643
No 24
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=97.22 E-value=0.00081 Score=58.95 Aligned_cols=138 Identities=15% Similarity=0.189 Sum_probs=85.2
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCC-ccceEeecCCCCCCCCcccccCCCC
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDN-LIPCYGFGDASTHDQDVFSFYSGGR 179 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~-~ip~yGFGa~~~~~~~vF~f~~~~p 179 (405)
+.++++||-|+|++. ..++++...+..++..++.++ .+-+..|+..... +|+|+...
T Consensus 3 ~divfvlD~S~Sm~~------------------~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~---~~~l~~~~- 60 (179)
T 1mjn_A 3 VDLVFLFDGSMSLQP------------------DEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKT---EFDFSDYV- 60 (179)
T ss_dssp EEEEEEEECBTTCCH------------------HHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEE---EECHHHHH-
T ss_pred ccEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeE---EEcCcccC-
Confidence 578999999999952 235666666667777776554 7999999876432 34442100
Q ss_pred ccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHH-HHhc----CCccEEEEEEeCCccccccccccCCCChhHHHHH
Q 015507 180 FCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSI-VEQS----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTV 254 (405)
Q Consensus 180 ~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i-~~~s----~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi 254 (405)
.-..+..++ +.++. +.|.|+....|+.|.+. .... .+.-.++++||||.-++.++ .
T Consensus 61 ~~~~~~~~~----~~i~~--~~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~---------~---- 121 (179)
T 1mjn_A 61 KRKDPDALL----KHVKH--MLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGN---------I---- 121 (179)
T ss_dssp HHCCHHHHH----TTCCC--CCBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSC---------C----
T ss_pred CHHHHHHHH----Hhccc--CCCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcc---------h----
Confidence 001222222 23333 45889999999999863 3221 23457889999999876321 0
Q ss_pred HHHHHhcCCCcEEEEEeccCCCc-----ccccccC
Q 015507 255 DAIVKASELPLSIVLVGVGDGPW-----DMMKEFD 284 (405)
Q Consensus 255 ~aIv~AS~lPLSIIiVGVGd~~F-----~~M~~LD 284 (405)
+...-+-|..||||+..- ..|+.+-
T Consensus 122 -----~~~~~i~i~~igvG~~~~~~~~~~~L~~iA 151 (179)
T 1mjn_A 122 -----DAAKDIIRYIIGIGKHFQTKESQETLHKFA 151 (179)
T ss_dssp -----GGGTTSEEEEEEESGGGCSHHHHHTTGGGS
T ss_pred -----HHHCCCEEEEEEccccccccccHHHHHHHh
Confidence 012457788899997532 5565553
No 25
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=97.00 E-value=0.0049 Score=65.17 Aligned_cols=160 Identities=12% Similarity=0.201 Sum_probs=101.1
Q ss_pred cCcceeceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccc---cCCCCccceEeecCCCCCC----
Q 015507 96 AGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV---FDEDNLIPCYGFGDASTHD---- 168 (405)
Q Consensus 96 ~Gle~~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~---yD~D~~ip~yGFGa~~~~~---- 168 (405)
+|-+ .++++||.|.||.... .+..++..+.|++.|..+++. -...-.|-++.||...+.+
T Consensus 33 ~~ke--~ivf~IDvS~SM~~~d-----------~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~ 99 (609)
T 1jey_A 33 SGRD--SLIFLVDASKAMFESQ-----------SEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNF 99 (609)
T ss_dssp -CEE--EEEEEEECSGGGGCCC-----------SSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCC
T ss_pred cCce--EEEEEEECCHHHcCCC-----------CCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCC
Confidence 4544 4899999999996421 122468899999999888875 3445699999999876421
Q ss_pred CCcccccC-CCCccCCHHHHHHHHHhhCC---------ceeecCCCChHHHHHHHHHHHHhcCCcc--EEEEEEeCCccc
Q 015507 169 QDVFSFYS-GGRFCYGFEEVLSRYREIVP---------NLKLAGPTSFAPVIEMAMSIVEQSGGQY--HVLLIIADGQVT 236 (405)
Q Consensus 169 ~~vF~f~~-~~p~~~G~egVl~aYr~~l~---------~v~LsGPT~FaPVI~~ai~i~~~s~~~Y--~VLLIITDG~It 236 (405)
.+|+-+.+ +.+ +.+ .++..++.+. .+.....|.+..+|-.|+++.+....++ -++++||||.-.
T Consensus 100 d~i~v~~~L~~~---~~~-~ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p 175 (609)
T 1jey_A 100 KNIYVLQELDNP---GAK-RILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNP 175 (609)
T ss_dssp TTEEEEEEEECC---CHH-HHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCT
T ss_pred CCeEEEecCCCC---CHH-HHHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCC
Confidence 22322221 111 222 2222222221 0111457999999999999987654332 578999999643
Q ss_pred cccccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccCCC-cc
Q 015507 237 RSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGP-WD 278 (405)
Q Consensus 237 ds~d~~~~~~~~d~~eTi~aIv~AS~lPLSIIiVGVGd~~-F~ 278 (405)
- +.-+..+.....++..+.++-|.|.+||||..+ |+
T Consensus 176 ~------~~~~~~~~~~~~~a~~l~~~gI~i~~igig~~~~fd 212 (609)
T 1jey_A 176 H------GNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFD 212 (609)
T ss_dssp T------TTCHHHHHHHHHHHHHHHHHTEEEEEEEBCCTTCCC
T ss_pred C------CCchHHHHHHHHHHHHHHhcCcEEEEEecCCCCccc
Confidence 1 111112346677778888999999999999753 54
No 26
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=96.87 E-value=0.0041 Score=64.97 Aligned_cols=150 Identities=15% Similarity=0.193 Sum_probs=96.8
Q ss_pred cCcceeceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhcc---ccCCCCccceEeecCCCCCC----
Q 015507 96 AGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLA---VFDEDNLIPCYGFGDASTHD---- 168 (405)
Q Consensus 96 ~Gle~~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~---~yD~D~~ip~yGFGa~~~~~---- 168 (405)
+|-. -.++++||.|.||.... .+ .++..+.|.+.+..+++ .......|-++.||...+..
T Consensus 4 ~~~k-e~iv~~iDvS~SM~~~d-----------~~-~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~ 70 (565)
T 1jey_B 4 SGNK-AAVVLCMDVGFTMSNSI-----------PG-IESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSG 70 (565)
T ss_dssp --CC-EEEEEEEECCGGGGCCB-----------TT-BCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCT
T ss_pred CCCc-eEEEEEEECChHhcccC-----------CC-CCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCcccc
Confidence 4543 26999999999996320 11 36888999999888888 46677899999999875321
Q ss_pred ----CCcccccCCCCccCCHHHHHHHHHhhCCceeec-CCCChHHHHHHHHHHHHhc--CCcc--EEEEEEeCCcccccc
Q 015507 169 ----QDVFSFYSGGRFCYGFEEVLSRYREIVPNLKLA-GPTSFAPVIEMAMSIVEQS--GGQY--HVLLIIADGQVTRSV 239 (405)
Q Consensus 169 ----~~vF~f~~~~p~~~G~egVl~aYr~~l~~v~Ls-GPT~FaPVI~~ai~i~~~s--~~~Y--~VLLIITDG~Itds~ 239 (405)
.+++-+.+-. ... ..+++...+ .+..+ +.|.+...|..|+++.++. ..++ -++++||||.-.-.
T Consensus 71 d~~y~~i~vl~~l~--~~~-~~~l~~l~~---~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~- 143 (565)
T 1jey_B 71 GDQYQNITVHRHLM--LPD-FDLLEDIES---KIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFS- 143 (565)
T ss_dssp TTCSTTEEEEEEEE--CCC-HHHHHHHHT---TCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCC-
T ss_pred ccCCCceEEeecCC--CCC-HHHHHHHHh---hccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCC-
Confidence 0121111100 011 133433333 23333 6799999999999988765 3334 57899999975421
Q ss_pred ccccCCCChhHHHHHHHHHHhcCCCcEEE-EEeccCC
Q 015507 240 DTVRGCLSPQEQKTVDAIVKASELPLSIV-LVGVGDG 275 (405)
Q Consensus 240 d~~~~~~~~d~~eTi~aIv~AS~lPLSII-iVGVGd~ 275 (405)
.....+++..+.+.-|.|. +||+|..
T Consensus 144 ----------~~~~~~~a~~l~~~gI~i~~vig~g~~ 170 (565)
T 1jey_B 144 ----------KSQLDIIIHSLKKCDISLQFFLPFSLG 170 (565)
T ss_dssp ----------CTTHHHHHHHHHHTTEEEEEEESSCCC
T ss_pred ----------HHHHHHHHHHHHhcCcEEEEEeccCCC
Confidence 1234566777778899999 8999864
No 27
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=96.79 E-value=0.012 Score=61.08 Aligned_cols=139 Identities=12% Similarity=0.173 Sum_probs=82.8
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCc
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~ 180 (405)
.+++|+||.|+||.... .. ++| . +.++.-.++ .+.. -.+..+-++.|++... .+.+.++
T Consensus 369 ~~v~lvvD~SgSM~~~~---~~-~~l-------~-~~~~Aa~l~-~~~~-~~~d~vglv~Fs~~~~----~~~~t~~--- 427 (538)
T 1yvr_A 369 KRFLLAIDVSASMNQRV---LG-SIL-------N-ASVVAAAMC-MLVA-RTEKDSHMVAFSDEML----PCPITVN--- 427 (538)
T ss_dssp CCEEEEEECSGGGGSBS---TT-SSC-------B-HHHHHHHHH-HHHH-HHCSSEEEEEESSSEE----CCSCCTT---
T ss_pred ceEEEEEECccccCCCC---CC-CcH-------H-HHHHHHHHH-HHHh-ccCCceEEEEECCCce----EcCCCCc---
Confidence 57899999999997431 00 111 1 233211222 1111 2234689999986321 1233222
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHh
Q 015507 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKA 260 (405)
Q Consensus 181 ~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~A 260 (405)
.++..+++.-.. + ..|.|+++..|..+.+. ....-++|+||||..++. .-+ ..+.++.+.+.
T Consensus 428 -~~l~~~l~~l~~----~-~~GgT~i~~aL~~a~~~----~~~~~~iIliTDg~~~~g------~~~--~~~~l~~~~~~ 489 (538)
T 1yvr_A 428 -MLLHEVVEKMSD----I-TMGSTDCALPMLWAQKT----NTAADIFIVFTDCETNVE------DVH--PATALKQYREK 489 (538)
T ss_dssp -SCHHHHHHHHTT----C-CCSCCCTTHHHHHHHHT----TCCCSEEEEEECCCCCSS------SCC--HHHHHHHHHHH
T ss_pred -ccHHHHHHHHhc----C-CCCCCcHHHHHHHHHhc----cCCCCEEEEEcCCCCCCC------CCC--HHHHHHHHHHH
Confidence 236665544332 2 56889999988888764 233467899999987641 111 34555666766
Q ss_pred cCCCcEEEEEeccCCCcc
Q 015507 261 SELPLSIVLVGVGDGPWD 278 (405)
Q Consensus 261 S~lPLSIIiVGVGd~~F~ 278 (405)
.+.++.+++||||.....
T Consensus 490 ~~~~v~l~~igig~~~~~ 507 (538)
T 1yvr_A 490 MGIPAKLIVCAMTSNGFS 507 (538)
T ss_dssp HTCCCEEEEEECSSSSEE
T ss_pred hCCCcEEEEEEecCCCCc
Confidence 678899999999986554
No 28
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=96.00 E-value=0.03 Score=58.24 Aligned_cols=140 Identities=14% Similarity=0.163 Sum_probs=83.3
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCc
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~ 180 (405)
.+++|+||.|+||.+.+ ... ....+..+.| ..++-++.. . +..+-++.|++.... + .+.++
T Consensus 363 ~~~lv~vDvSgSM~~~~-------~~~--~~k~~~~e~A-a~la~~~~r-~-~d~v~lv~Fs~~~~~---~-~~~~~--- 423 (535)
T 2nvo_A 363 TRHLLALDVSGSMTCGD-------VAG--VPGLTPNMAA-AAMSLIALR-T-EPDALTMGFAEQFRP---L-GITPR--- 423 (535)
T ss_dssp SEEEEEECCSGGGGSCC-------GGG--CTTCCHHHHH-HHHHHHHHH-H-SSEEEEEEEBSSEEE---C-CCCTT---
T ss_pred ceEEEEEECCccccCCC-------CCC--CCcccHHHHH-HHHHHHHcC-c-CCceEEEEECCcceE---c-CCCcc---
Confidence 57899999999996411 000 1123433433 344433332 2 226888999874321 1 22222
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHh
Q 015507 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKA 260 (405)
Q Consensus 181 ~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~A 260 (405)
.++.++++. +... ..|.|+++..|+.+.+. ....-+++|||||+... |..++ .+.++...+.
T Consensus 424 -~~l~~~l~~---l~~~--~~ggTdi~~~l~~a~~~----~~~~~~vIliTD~~~~~------g~~~~--~~al~~~r~~ 485 (535)
T 2nvo_A 424 -DTLESAMQK---AQSV--SFGGTDCAQPILWAAQE----RLDVDTFVVYTDNETWA------GQVHP--TVALDQYAQK 485 (535)
T ss_dssp -CCHHHHHHH---TCCS--SBCCCCTTHHHHHHHHT----TCCCSEEEEEESSCCCC------CSSCH--HHHHHHHHHH
T ss_pred -hhHHHHHHH---HhhC--CCCCccHHHHHHHHHHh----cCCCCEEEEEeCCCccC------CCCCH--HHHHHHHHHh
Confidence 455555433 3221 26889999888776432 34467889999998764 11223 3556666666
Q ss_pred cCCCcEEEEEeccCCCc
Q 015507 261 SELPLSIVLVGVGDGPW 277 (405)
Q Consensus 261 S~lPLSIIiVGVGd~~F 277 (405)
.+.++-+++||||....
T Consensus 486 ~~~~~klv~i~l~~~~~ 502 (535)
T 2nvo_A 486 MGRAPKLIVVGLTATEF 502 (535)
T ss_dssp HSCCCEEEEEETTCSCC
T ss_pred hCCCCeEEEEeccCCCc
Confidence 67899999999998643
No 29
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=90.26 E-value=1.3 Score=49.12 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=70.0
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHH---HHHHHHhhhccccCCCCccceEeecCCCCCCC--------
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYE---QAISIIGKTLAVFDEDNLIPCYGFGDASTHDQ-------- 169 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq---qAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~-------- 169 (405)
+.++++||.|+||... .+. .....+ +|+..+...|.. ..+-.|-+..|+.......
T Consensus 225 ~DIVfVLD~SGSM~~~--------~~~----~~~Rl~~~K~a~~~~ld~L~~-~~~drVgLV~Fs~~a~~~~~~~v~~~~ 291 (893)
T 2ww8_A 225 LDVVILLDNSNSMSNI--------RNK----NARRAERAGEATRSLIDKITS-DSENRVALVTYASTIFDGTEFTVEKGV 291 (893)
T ss_dssp EEEEEEEECCGGGCTT--------HHH----HCCHHHHHHHHHHHHHHHHHT-STTCEEEEEEESSSBCBSCEEEEECCE
T ss_pred ccEEEEEeCCCCCCCc--------Ccc----chhHHHHHHHHHHHHHHHhhc-CCCcEEEEEEecCcccccccccccccc
Confidence 5699999999999631 000 011233 455555444433 3467899999997532100
Q ss_pred ------------------CcccccCCCCcc-----CCHHHHHHHHHhhCCc----------eeecCCCChHHHHHHHHHH
Q 015507 170 ------------------DVFSFYSGGRFC-----YGFEEVLSRYREIVPN----------LKLAGPTSFAPVIEMAMSI 216 (405)
Q Consensus 170 ------------------~vF~f~~~~p~~-----~G~egVl~aYr~~l~~----------v~LsGPT~FaPVI~~ai~i 216 (405)
..|... ..+.| ...+++ +.-++.++. +...|-|+...-|+.|+++
T Consensus 292 ~~~~g~~~n~~~~w~~~~t~~t~~-~~~~~~lpLT~d~~~i-~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~l 369 (893)
T 2ww8_A 292 ADKNGKRLNDSLFWNYDQTSFTTN-TKDYSYLKLTNDKNDI-VELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEI 369 (893)
T ss_dssp ECTTCCEECCCTTSCTTCCEEEEE-CCBCCEEEEECCHHHH-HHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccc-ccccccccccCCHHHH-HHHHHHHhhhccccccccccccCCCChHHHHHHHHHHH
Confidence 000000 01112 223332 333455553 3446889999999999999
Q ss_pred HHhc--CCccEEEEEEeCCcccc
Q 015507 217 VEQS--GGQYHVLLIIADGQVTR 237 (405)
Q Consensus 217 ~~~s--~~~Y~VLLIITDG~Itd 237 (405)
.++. ...=-++|+||||.-+.
T Consensus 370 L~~~~~~~~~kvIILLTDG~pt~ 392 (893)
T 2ww8_A 370 LTQQARQNSQKVIFHITDGVPTM 392 (893)
T ss_dssp HHHHSCSSSEEEEEEEESSCCSE
T ss_pred HHhhcccCCCeEEEEEcCCCCCc
Confidence 8742 23346789999998775
No 30
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=82.91 E-value=1.9 Score=40.08 Aligned_cols=108 Identities=12% Similarity=0.168 Sum_probs=60.9
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccCCCCccceEeecCCCCCCCCcccccCCCCc
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD~D~~ip~yGFGa~~~~~~~vF~f~~~~p~ 180 (405)
+.|.+.+|+|+||+. ++ ...++.+..|..-|+.+..+-.|-+-+|-++. ..+++.|..
T Consensus 4 vDl~fl~D~S~SM~~------------di----~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~--~~~~l~lT~---- 61 (212)
T 2iue_A 4 VDLYFLMGLSGSAQG------------HL----SNVQTLGSDLLKALNEISRSGRIGFGSIVNMT--FQHILKLTA---- 61 (212)
T ss_dssp EEEEEEEECCGGGTT------------TH----HHHHHHHHHHHHHHHHHCSCEEEEEEEESSSC--EEEEEEEES----
T ss_pred eEEEEEEeCCCcchh------------HH----HHHHHHHHHHHHHHHhhCcCceEEEEEEEcCc--ceecCCcCC----
Confidence 578999999999973 12 34567777777777777666555444454541 122334432
Q ss_pred cCCHHHHHHHHHhhCCceeecC----CCC-hHHHHHHHHH--HHHhcCCccEEEEEEeCCcccc
Q 015507 181 CYGFEEVLSRYREIVPNLKLAG----PTS-FAPVIEMAMS--IVEQSGGQYHVLLIIADGQVTR 237 (405)
Q Consensus 181 ~~G~egVl~aYr~~l~~v~LsG----PT~-FaPVI~~ai~--i~~~s~~~Y~VLLIITDG~Itd 237 (405)
.++. +.+.+.+...+| |-. |.-+++.+.. ...... .-.+||++||+..+.
T Consensus 62 --d~~~----F~~~v~~~~vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~ 118 (212)
T 2iue_A 62 --DSSQ----FQRELRKQLVSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHL 118 (212)
T ss_dssp --CHHH----HHHHHHTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCC
T ss_pred --CHHH----HHHHHhhccccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCccc
Confidence 2333 233444455555 333 3334443321 122334 568999999998775
No 31
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=75.91 E-value=4.1 Score=44.01 Aligned_cols=49 Identities=14% Similarity=0.344 Sum_probs=29.0
Q ss_pred HHHHHhhCCceeecCC----C-ChHHHHHHHH--HHHHhcCCccEEEEEEeCCccc
Q 015507 188 LSRYREIVPNLKLAGP----T-SFAPVIEMAM--SIVEQSGGQYHVLLIIADGQVT 236 (405)
Q Consensus 188 l~aYr~~l~~v~LsGP----T-~FaPVI~~ai--~i~~~s~~~Y~VLLIITDG~It 236 (405)
.+.+++.+.++..+|- - -|.-|+..|. +.+....+-.++||++||...+
T Consensus 200 ~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H 255 (690)
T 3fcs_B 200 VTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTH 255 (690)
T ss_dssp HHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBC
T ss_pred HHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCccc
Confidence 3455666666666653 2 3444444442 2233344567999999998766
No 32
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=70.21 E-value=5.3 Score=38.00 Aligned_cols=89 Identities=16% Similarity=0.197 Sum_probs=56.8
Q ss_pred eceEEEEecCCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhhccccC---CCCccceEeecCCCCCCCCcc-cccC
Q 015507 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDASTHDQDVF-SFYS 176 (405)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---~D~~ip~yGFGa~~~~~~~vF-~f~~ 176 (405)
..+++.||-|+||. ++ .+.+-..+-.++..++ ....|-++.|+........+. .|..
T Consensus 135 ~~vvfLVDtSgSM~--~k-----------------l~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~ 195 (242)
T 3rag_A 135 LHLVVCLDTSASMR--DK-----------------IPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSS 195 (242)
T ss_dssp EEEEEEEECSGGGT--TT-----------------HHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEES
T ss_pred CCEEEEEECcccHH--HH-----------------HHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCC
Confidence 57899999999995 11 2444444445555443 567899999998653222222 3332
Q ss_pred CCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHh
Q 015507 177 GGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQ 219 (405)
Q Consensus 177 ~~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~ 219 (405)
. . -+. +.++.+...|-|..++-|+.|.++.++
T Consensus 196 ~---~-~~~-------~~l~~L~agG~Tplg~AL~~A~~~~~~ 227 (242)
T 3rag_A 196 E---V-NVA-------ALEAELVARGGTPTGPAIDHAADLLLS 227 (242)
T ss_dssp S---C-CHH-------HHHHHCCCCSCCCHHHHHHHHHHHHHH
T ss_pred h---H-HHH-------HHHhhCCCCCCCcHHHHHHHHHHHHHH
Confidence 2 1 222 233445668999999999999998764
No 33
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=61.32 E-value=5.2 Score=38.05 Aligned_cols=42 Identities=24% Similarity=0.394 Sum_probs=28.0
Q ss_pred ccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 015507 223 QYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGP 276 (405)
Q Consensus 223 ~Y~VLLIITDG~Itds~d~~~~~~~~d~~eTi~aIv~AS~lPLSIIiVGVGd~~ 276 (405)
.--++++||||.-+- |. +| .++...|.+.-|-|..||||+.+
T Consensus 9 ~~k~iillTDG~~~~------g~-~p-----~~aa~~a~~~gi~v~tIGig~~~ 50 (242)
T 3rag_A 9 TIRQILVITDGCSNI------GP-DP-----VEAARRAHRHGIVVNVIGIVGRG 50 (242)
T ss_dssp CEEEEEEEESSCCCS------SS-CH-----HHHHHHHHHTTCEEEEEEECCSS
T ss_pred CccEEEEEccCCCCC------CC-CH-----HHHHHHHHHCCCEEEEEEecCCc
Confidence 346789999998542 11 22 23344566778999999998753
No 34
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=47.34 E-value=30 Score=37.40 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=14.8
Q ss_pred CcceeceEEEEecCCCCCc
Q 015507 97 GLESSNLIVGIDFTKSNEW 115 (405)
Q Consensus 97 Gle~~nliVaIDFT~SN~~ 115 (405)
+.. +.|.+.||+|.||..
T Consensus 102 ~yp-vDly~LmD~S~SM~d 119 (687)
T 3k6s_B 102 GYP-IDLYYLMDLSYSMLD 119 (687)
T ss_dssp CCC-CEEEEEEECSSTTHH
T ss_pred CCc-eeEEEEEcCCcchHH
Confidence 444 789999999999974
No 35
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=35.44 E-value=41 Score=34.87 Aligned_cols=49 Identities=16% Similarity=0.373 Sum_probs=26.8
Q ss_pred HHHHhhCCceeecC----CCC-hHHHHHHHH--HHHHhcCCccEEEEEEeCCcccc
Q 015507 189 SRYREIVPNLKLAG----PTS-FAPVIEMAM--SIVEQSGGQYHVLLIIADGQVTR 237 (405)
Q Consensus 189 ~aYr~~l~~v~LsG----PT~-FaPVI~~ai--~i~~~s~~~Y~VLLIITDG~Itd 237 (405)
+.+++.+.++..+| |-. |.-|+..|. +.......--++||++||...+-
T Consensus 201 ~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TDa~~H~ 256 (472)
T 3t3p_B 201 TRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHI 256 (472)
T ss_dssp HHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCC
T ss_pred HHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECCCCcCc
Confidence 34455555555555 333 444444442 22333334568999999987653
No 36
>3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii}
Probab=31.78 E-value=79 Score=32.61 Aligned_cols=147 Identities=16% Similarity=0.236 Sum_probs=77.6
Q ss_pred ccccHHHHHHHHHHcCcceeceEEEEecCCCCCcCCCC-CCCCCCccccCCC-----CCHHHHHHHHHhhhccccCCCCc
Q 015507 82 DYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKR-SFNRRSLHYIGDG-----LNPYEQAISIIGKTLAVFDEDNL 155 (405)
Q Consensus 82 ~ys~ld~V~~aL~~~Gle~~nliVaIDFT~SN~~~g~~-s~~~~SLH~i~~~-----~N~YqqAI~~Ig~vl~~yD~D~~ 155 (405)
+-.-||-|.+|.+++|.+ -.+.+|+|+.+|--+..+. .| .|.+-+.. .=.-+++|+-+.+++..|+
T Consensus 227 ~~eaL~ll~~Ai~~aGy~-~~i~i~lD~Aasefy~~~~g~Y---~l~fk~~~~~~~~~~t~~Elid~y~~lle~yp---- 298 (452)
T 3otr_A 227 AEEALNLLVEAIKAAGYE-GKIKIAFDAAASEFYKQDEKKY---DLDYKCKTKNASKHLTGEKLKEVYEGWLKKYP---- 298 (452)
T ss_dssp HHHHHHHHHHHHHHHTCT-TTSEEEEECCGGGGEETTTTEE---ETTTTCSSCCGGGEECHHHHHHHHHHHHHHSC----
T ss_pred HHHHHHHHHHHHHHcCCC-ceEEEccccchHhheeccCCeE---EeeccCCCCcccccccHHHHHHHHHHHHhhhC----
Confidence 344588999999999999 5999999999996542110 01 11111100 0024888888888887764
Q ss_pred cceEeecCCCCCCCCcccccCCCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEE-Ee-CC
Q 015507 156 IPCYGFGDASTHDQDVFSFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLI-IA-DG 233 (405)
Q Consensus 156 ip~yGFGa~~~~~~~vF~f~~~~p~~~G~egVl~aYr~~l~~v~LsGPT~FaPVI~~ai~i~~~s~~~Y~VLLI-IT-DG 233 (405)
+.-+-+- |.++ .+++.-.-.++.-..+++.|-..|.--.+.+.+.++... ..+|+| +. =|
T Consensus 299 --Iv~IEDP---------l~~d-----D~eg~a~Lt~~lg~~iqIvGDDl~vTn~~~i~~~Ie~~a--~n~IlIKvnQIG 360 (452)
T 3otr_A 299 --IISVEDP---------FDQD-----DFASFSAFTKDVGEKTQVIGDDILVTNILRIEKALKDKA--CNCLLLKVNQIG 360 (452)
T ss_dssp --EEEEECC---------SCTT-----CHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTC--CSEEEECHHHHC
T ss_pred --ceEEecC---------CChh-----hHHHHHHHHHhhCCCeEEEeCccccCCHHHHHHHHhcCC--CCEEEeeccccc
Confidence 3333221 1112 344433332333235777775544222333333343322 223222 22 25
Q ss_pred ccccccccccCCCChhHHHHHHHHHHhcCCCcEEEE
Q 015507 234 QVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVL 269 (405)
Q Consensus 234 ~Itds~d~~~~~~~~d~~eTi~aIv~AS~lPLSIIi 269 (405)
.|+ ++++++.-|-..-+.+++
T Consensus 361 gIT---------------Ealka~~lA~~~G~~vmv 381 (452)
T 3otr_A 361 SVT---------------EAIEACLLAQKSGWGVQV 381 (452)
T ss_dssp CHH---------------HHHHHHHHHHHTTCEEEE
T ss_pred cHH---------------HHHHHHHHHHHcCCeEEE
Confidence 554 677777777666665554
No 37
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica}
Probab=30.32 E-value=84 Score=32.30 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=42.6
Q ss_pred ccccHHHHHHHHHHcCcceeceEEEEecCCCCCcCCC-CCCCCCCccccCC-------CCCHHHHHHHHHhhhccccC
Q 015507 82 DYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGK-RSFNRRSLHYIGD-------GLNPYEQAISIIGKTLAVFD 151 (405)
Q Consensus 82 ~ys~ld~V~~aL~~~Gle~~nliVaIDFT~SN~~~g~-~s~~~~SLH~i~~-------~~N~YqqAI~~Ig~vl~~yD 151 (405)
+-.-||-|.+|.+++|.+ -.+.+|+|+.+|--+..+ ..| .|.+-+. ..=.-+++|+-+.+.+..|+
T Consensus 223 ~~eaL~ll~~Ai~~aGy~-~~i~i~lD~Aasefy~~~~g~Y---~l~f~~~~~~~~~~~~~t~~elid~y~~lle~yp 296 (441)
T 3qtp_A 223 AREALDLLVEAIAKAGYT-GKIEIAMDCAASEFYNEETKKY---DLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYP 296 (441)
T ss_dssp HHHHHHHHHHHHHHHTCT-TTCEEEEECCGGGGEETTTTEE---ETTTTSCGGGCCGGGEECHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCC-ceEEEccchhHHHhhhccCCeE---EeecCCcccccccccccCHHHHHHHHHHHhhhcc
Confidence 344588899999999999 599999999998765321 001 1111010 00014788888888887765
No 38
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=29.72 E-value=36 Score=35.63 Aligned_cols=48 Identities=13% Similarity=0.281 Sum_probs=27.3
Q ss_pred HHHHhhCCceeecCC----C-ChHHHHHHHH--HHHHhcCCccEEEEEEeCCcccc
Q 015507 189 SRYREIVPNLKLAGP----T-SFAPVIEMAM--SIVEQSGGQYHVLLIIADGQVTR 237 (405)
Q Consensus 189 ~aYr~~l~~v~LsGP----T-~FaPVI~~ai--~i~~~s~~~Y~VLLIITDG~Itd 237 (405)
+.+.+.+.+...+|- - -|.-||..|. +...... .-++||++||...+-
T Consensus 221 ~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~IgWR~-a~rllV~~TDA~fH~ 275 (503)
T 3v4v_B 221 QAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGWRN-VSRLLVFTSDDTFHT 275 (503)
T ss_dssp HHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEEESSCBCC
T ss_pred HHHHHHHhhcCccCCCCCCchHHHHHHHHhhcccccCCCc-ceEEEEEECCCCcCc
Confidence 455666666666653 2 2444555443 2232333 347889999987653
No 39
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=27.96 E-value=13 Score=35.79 Aligned_cols=36 Identities=33% Similarity=0.585 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccC
Q 015507 28 TGYLQSPYGQESQNYPPQTYPPPQTYSTQQYYPSSEEH 65 (405)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (405)
++++.+||+++ +|||++|++++.++++++|+....+
T Consensus 398 ~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (448)
T 2z73_A 398 QGYPPQGYPPQ--GYPPQGYPPQGYPPPPQGAPPQGAP 433 (448)
T ss_dssp --------------------------------------
T ss_pred CCCCCCCCCCC--CCCCcCCCCCCCCCCCCCCCCCCCC
Done!