BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015509
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1M83|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In A Closed, Pre-Transition State
Conformation
pdb|1MAU|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp And Tryptophanamide In A
Pre-Transition State Conformation
pdb|1MAW|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MB2|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|2OV4|A Chain A, Crystal Structure Of B. Stearothermophilus Tryptophanyl
Trna Synthetase In Complex With Adenosine Tetraphosphate
Length = 328
Score = 261 bits (667), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 147/341 (43%), Positives = 194/341 (56%), Gaps = 29/341 (8%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRET 124
K I SG+QP+G I +GNY+GA++ ++ LQ IT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 125 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 184
AA+YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS--AGKEAVS 119
Query: 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 244
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGE------------ 167
Query: 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 364
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 365 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 405
M +S LD+VL + + QAMG RR
Sbjct: 288 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGRR 327
>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
pdb|3PRH|B Chain B, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
Length = 388
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 145/344 (42%), Positives = 196/344 (56%), Gaps = 29/344 (8%)
Query: 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKAT 121
++K+ I SG+QP+GS+ LGNY+GA+K ++ LQ IT+P D +L K
Sbjct: 33 TMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNI 92
Query: 122 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 181
R AA+YLA G+D KA++F+QS V AH + W++ IG L +M QFK+KS G E
Sbjct: 93 RNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKSK--GNE 150
Query: 182 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXX 241
V LLTYP LMA+DILLY +D VP GEDQKQHLELTR LAER N
Sbjct: 151 AVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYND--------- 201
Query: 242 XXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 301
IF +PE IP GAR+MSL D L KMSKS P+ ++ I LLD + KIK TDS
Sbjct: 202 ---IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDS 258
Query: 302 SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQ 361
++FD +P +NLL+IY ++ T E+ + + +G FK L + ++ L PIQ
Sbjct: 259 EGIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKPIQ 318
Query: 362 VRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 405
RY E++ +S LD++L L + AMG R+
Sbjct: 319 DRYYELI-ESEELDRILDEGAERANRTANKMLKKMENAMGLGRK 361
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 248 bits (634), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 143/340 (42%), Positives = 190/340 (55%), Gaps = 29/340 (8%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRET 124
K I SG+QP+G I +GNY+GA++ ++ LQ IT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 125 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 184
AA+YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS A
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGA--AAAA 119
Query: 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 244
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYG------------E 167
Query: 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 364
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 365 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 404
M +S LD+VL + + QAMG R
Sbjct: 288 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 326
>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
pdb|3N9I|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
Length = 346
Score = 248 bits (633), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 147/357 (41%), Positives = 199/357 (55%), Gaps = 31/357 (8%)
Query: 64 LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------IT 109
+SEP + S K + SG QP+G + +GNY+GA++ W+ +Q IT
Sbjct: 1 MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60
Query: 110 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 169
D L K T +T A+YLACGID K+++FVQSHV H +L W L+ T G L++M
Sbjct: 61 ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120
Query: 170 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXX 229
QFK+KS + EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N
Sbjct: 121 QFKDKSARY-AENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 179
Query: 230 XXXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKD 288
IFK+PEP IP AGARVMSL D KMSKS + + I LL DPK
Sbjct: 180 YGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKS 227
Query: 289 VIANKIKRCKTDSS--AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFK 346
V+ KIKR TDS A + +D ++ +NLL I ++G++ E+ + +G K
Sbjct: 228 VV-KKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLK 286
Query: 347 PLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFL 403
+ DA+ L +Q RY D A L V+ TL VY+A+GF+
Sbjct: 287 GAVADAVSGMLSELQERYRTYREDEALLQDVMREGAAKARARAQVTLAKVYEAIGFV 343
>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1I6L|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
Length = 328
Score = 244 bits (624), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 141/341 (41%), Positives = 186/341 (54%), Gaps = 29/341 (8%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRET 124
K I SG+QP+G I +GNY+GA++ ++ LQ IT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 125 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 184
AA+YLA GID ++A++F+QS V AH + W L IG L + QFKEKS AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELERXTQFKEKS--AGKEAVS 119
Query: 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 244
LLTYP L A+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGE------------ 167
Query: 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304
+F +PE IP GAR+ SL D K SKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIXSLVDPTKKXSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 364
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 365 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 405
+S LD+VL + QA G RR
Sbjct: 288 HH-WXESEELDRVLDEGAEKANRVASEXVRKXEQAXGLGRR 327
>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|B Chain B, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|C Chain C, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|D Chain D, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|E Chain E, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|F Chain F, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|G Chain G, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|H Chain H, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|I Chain I, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|J Chain J, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|K Chain K, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|L Chain L, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|M Chain M, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|N Chain N, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|O Chain O, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|P Chain P, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|Q Chain Q, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|R Chain R, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
Length = 326
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 140/340 (41%), Positives = 185/340 (54%), Gaps = 29/340 (8%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRET 124
K I SG+QP+G I +GNY+GA++ ++ LQ IT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 125 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 184
AA+YLA GID ++A++F+QS V AH + W L IG L + QFKEKS AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELERXTQFKEKS--AGKEAVS 119
Query: 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 244
LLTYP L A+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGE------------ 167
Query: 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304
+F +PE IP GAR+ SL D K SKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIXSLVDPTKKXSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 364
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 365 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 404
+S LD+VL + QA G R
Sbjct: 288 HH-WXESEELDRVLDEGAEKANRVASEXVRKXEQAXGLGR 326
>pdb|3SZ3|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Vibrio Cholerae With An Endogenous Tryptophan
Length = 341
Score = 234 bits (596), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 196/351 (55%), Gaps = 29/351 (8%)
Query: 73 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLS 118
S++ K ++SGVQP+G + +GNYLGA++ W +Q IT+ D Q L
Sbjct: 1 SNAMSKPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALH 60
Query: 119 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 178
+AT + AI LA G+D K+++FVQSHV H +L W+L+ T +G L++M QFK+KS +
Sbjct: 61 EATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARY 120
Query: 179 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXX 238
+ V L YPVLMA+DILLY + VPVG DQKQHLEL R++A R N
Sbjct: 121 AND-VNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFN---------NI 170
Query: 239 XXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRC 297
IF +PEP IP ARVMSL D KMSKS + ++ I LL DPK +I KI +
Sbjct: 171 YSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSII-KKINKA 229
Query: 298 KTDSSAG--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMN-WGTFKPLLTDALI 354
+TD+ + +D + NL+ +Y +GKT E+ + + +G FK + +A++
Sbjct: 230 QTDAETPPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVV 289
Query: 355 EHLHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 405
L P+Q Y+ I +D YL+ V+ TL VY A+GF+ R
Sbjct: 290 AMLEPVQAEYQRIRNDREYLNSVMRDGAEKASAKALQTLKKVYAAVGFVAR 340
>pdb|3FHJ|A Chain A, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 300
Score = 211 bits (536), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 134/340 (39%), Positives = 177/340 (52%), Gaps = 56/340 (16%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRET 124
K I SG+Q +GNY+GA++ ++ LQ IT+ D +L + R
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56
Query: 125 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 184
AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q V
Sbjct: 57 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104
Query: 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 244
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 150
Query: 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304
F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK SS G
Sbjct: 151 -FTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK-----SSEG 204
Query: 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 364
+ P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 205 ----TIRYPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 260
Query: 365 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 404
M +S LD+VL + + QAMG R
Sbjct: 261 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 299
>pdb|3FHJ|F Chain F, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 297
Score = 207 bits (527), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 176/340 (51%), Gaps = 59/340 (17%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRET 124
K I SG+QP+G I +GNY+GA++ ++ LQ IT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 125 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 184
AA+YLA GID ++A++F+QS V AH + W+L IG L +M V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERM--------------VS 107
Query: 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 244
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 108 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 153
Query: 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304
F +PE R+MSL D KMSKS P+ ++ I LLD I KIK SS G
Sbjct: 154 -FTIPE------ARRIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK-----SSEG 201
Query: 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 364
+ P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 202 ----TIRYPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 257
Query: 365 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 404
M +S LD+VL + + QAMG R
Sbjct: 258 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 296
>pdb|3FHJ|E Chain E, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 293
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/340 (38%), Positives = 173/340 (50%), Gaps = 63/340 (18%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRET 124
K I SG+Q +GNY+GA++ ++ LQ IT+ D +L + R
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56
Query: 125 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 184
AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q V
Sbjct: 57 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104
Query: 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 244
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 150
Query: 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304
F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK
Sbjct: 151 -FTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK--------- 200
Query: 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 364
P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 201 -------SPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 253
Query: 365 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 404
M +S LD+VL + + QAMG R
Sbjct: 254 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 292
>pdb|3U1V|A Chain A, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|B Chain B, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|C Chain C, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|D Chain D, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
Length = 338
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 173/341 (50%), Gaps = 29/341 (8%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRET 124
K I S + PTG I +G Y+GA++ ++ LQ IT+ D +L + R
Sbjct: 2 KTIFSAICPTGVITIGRYIGALRQFVELQHEYNCYFCIADQSAITVWQDPHELRQNIRRL 61
Query: 125 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 184
AA+YLA GID ++A++F+ S V AH + W L IG L + FKE S AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIASEVPAHAQAAWXLQCIVYIGELERXTLFKELS--AGKEAVS 119
Query: 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 244
LLT+P + A+ ILLY +D VPVGE KQ ELTR+LAER N
Sbjct: 120 AGLLTHPPIYAAXILLYNTDIVPVGEYGKQLYELTRDLAERFNKRYGE------------ 167
Query: 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304
+F +PE IP GAR+ SL D +S P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIXSLVDPTKSXYQSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 364
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 365 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 405
+S LD+VL + QA G RR
Sbjct: 288 HH-WXESEELDRVLDEGAEKANRVASEXVRKXEQAXGLGRR 327
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 204 bits (520), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 131/340 (38%), Positives = 172/340 (50%), Gaps = 69/340 (20%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRET 124
K I SG+QP+G I +GNY+GA++ ++ LQ IT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 125 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 184
AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 109
Query: 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 244
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER
Sbjct: 110 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAER------------------- 150
Query: 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304
F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK
Sbjct: 151 FFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSA------- 203
Query: 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 364
+NLL+IY +SG++ E+ + FK L +IE L PIQ RY
Sbjct: 204 ----------ISNLLNIYSTLSGQSIEELERQY------VFKADLAQVVIETLRPIQERY 247
Query: 365 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 404
M +S LD+VL + + QAMG R
Sbjct: 248 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 286
>pdb|2EL7|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
pdb|2EL7|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
Length = 337
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 129/346 (37%), Positives = 179/346 (51%), Gaps = 40/346 (11%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIA------------------LQITLPYDTQQLSKA 120
KR++SG+QP+G IH+GNYLGAIK W+A L L YD L++
Sbjct: 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQR 61
Query: 121 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 180
T E A + +A G+D K ++FVQSHV H EL W+ ++ TP+G L +M QFK+K+ K
Sbjct: 62 TFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASKQ-- 119
Query: 181 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXX 240
E V LL YPVL A+DIL+Y++D VPVGEDQ QH+ELTRE+A R N
Sbjct: 120 ETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGET------- 172
Query: 241 XXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 300
F P+ L+ P RV + DG +KMSKS + I LL+P++ I KI+ D
Sbjct: 173 -----FPEPQALLNPEAPRVPGI-DGKAKMSKSL---GNTIGLLEPEESIWQKIQHLPDD 223
Query: 301 SSAGLEFDNLERPECNNLLSIYQLISGKTKGE-VAEECQNMNWGTF--KPLLTDALIEHL 357
+ + PE L + + K E + EE + GT+ K +L D L+E L
Sbjct: 224 PQR-IRLSDPGDPERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEAL 282
Query: 358 HPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFL 403
PI+ R E + D Y+ L T+ V + +G L
Sbjct: 283 RPIRERAEALKKDPDYVMDALLEGAKRARAVAQATMEEVREKVGLL 328
>pdb|3FHJ|B Chain B, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 292
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 130/340 (38%), Positives = 173/340 (50%), Gaps = 64/340 (18%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRET 124
K I SG+Q +GNY+GA++ ++ LQ IT+ D +L + R
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56
Query: 125 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 184
AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q V
Sbjct: 57 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104
Query: 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 244
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 150
Query: 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304
F +PE R+MSL D KMSKS P+ ++ I LLD I KIK SS G
Sbjct: 151 -FTIPE--------RIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK-----SSEG 196
Query: 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 364
+ P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 197 ----TIRYPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 252
Query: 365 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 404
M +S LD+VL + + QAMG R
Sbjct: 253 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 291
>pdb|3FHJ|C Chain C, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 280
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 131/340 (38%), Positives = 167/340 (49%), Gaps = 76/340 (22%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRET 124
K I SG+Q +GNY+GA++ ++ LQ IT+ D +L + R
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56
Query: 125 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 184
AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q V
Sbjct: 57 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104
Query: 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 244
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 150
Query: 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304
F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK SS G
Sbjct: 151 -FTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK-----SSEG 204
Query: 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 364
P +NLL+IY + G FK L +IE L PIQ RY
Sbjct: 205 -------TPGISNLLNIYSTL-----------------GVFKADLAQVVIETLRPIQERY 240
Query: 365 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 404
M +S LD+VL + + QAMG R
Sbjct: 241 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 279
>pdb|2YY5|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
Length = 348
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 162/323 (50%), Gaps = 40/323 (12%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRET 124
KR ++G+Q +G HLGNYLG +++ I LQ IT+ + Q L + +
Sbjct: 5 KRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDL 64
Query: 125 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA-----G 179
LA G+D KA +F+QS + H + +L+ + +G L +M QFK K + G
Sbjct: 65 VRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNG 124
Query: 180 GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXX 239
N+ LLTYP LMA DILLYQ D VPVG DQKQHLELTR+LA+R+
Sbjct: 125 TLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLK------ 178
Query: 240 XXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 299
++P+ + R+M L D KMSKS+ + I L DPK+V+ KI++ T
Sbjct: 179 ------LRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQATT 232
Query: 300 DSSAGLEFDNLERPECNNLLSIY---------QLISGKTKGEVAEECQNMNWGTFKPLLT 350
DS + F + +P N+L+I Q ++ + ++ ++ K LT
Sbjct: 233 DSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALT 292
Query: 351 DALIEHLHPIQVRYEEIMSDSAY 373
+A + L IQ + E+I + +
Sbjct: 293 EATVNLLVNIQRKREQISREQVF 315
>pdb|3M5W|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni
pdb|3M5W|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni
pdb|3TZL|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni Complexed With Adp And Tryptophane
pdb|3TZL|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni Complexed With Adp And Tryptophane
Length = 322
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 168/342 (49%), Gaps = 45/342 (13%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRETA 125
R+++G+QP+G +H+GNY GAIK + Q T D ++L + + + A
Sbjct: 5 RVLTGLQPSGDLHIGNYFGAIKQXVDAQEKSQXFXFIANYHAXTSSQDGEKLKQNSLKAA 64
Query: 126 AIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGV 185
A +L+ GID K+ ++QS V+ EL W+LS TP G L + +K+K A G +
Sbjct: 65 AAFLSLGIDPQKSVFWLQSDVKEVXELYWILSQFTPXGLLERAHSYKDKV--AKGLSASH 122
Query: 186 ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXAI 245
L +YPVL A+DILL+ + VPVG+DQ QH+E+ R++A +VN I
Sbjct: 123 GLFSYPVLXAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEWGE------------I 170
Query: 246 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGL 305
F +PE + A V+ TDG +K + S Q+ I++ + + +I TDS+A
Sbjct: 171 FTLPEARVNEEVAVVVG-TDG----AKXSKSYQNTIDIFSSEKTLKKQISSIVTDSTA-- 223
Query: 306 EFDNLERP---ECNNLLSIYQLI---SGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHP 359
LE P E N+ I +L SG+ + ++ E +G FK L + + +
Sbjct: 224 ----LEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKE 279
Query: 360 IQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMG 401
+ +Y E++ ++L ++L +Y+ +G
Sbjct: 280 AREKYNELLEKPSHLKEILDFGATKARKIAQEKXQKIYEKIG 321
>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec
6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From
Thermotoga Maritima At 2.50 A Resolution
Length = 340
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 114/347 (32%), Positives = 168/347 (48%), Gaps = 44/347 (12%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITLPYD-TQQLSKATRE 123
RI+SG++PTG +H+G+ +GA++NW+ LQ +T YD +L + TR+
Sbjct: 14 RILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRD 73
Query: 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 183
+LACGID K+ +FVQS V+ H EL L S + L ++ +KE + +++
Sbjct: 74 LVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYKDL 133
Query: 184 GVA-LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXX 242
A L YPVL A+DIL+Y+++ VPVGEDQ H+ELTRE+A R N
Sbjct: 134 STAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFN------------YLY 181
Query: 243 XAIFKVPEPLIPPAGARVMSL--TDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 300
+F PE ++ +RV L TDG KMSKS + INL + + I R TD
Sbjct: 182 DEVFPEPEAIL----SRVPKLPGTDG-RKMSKSY---GNIINLEISEKELEQTILRMMTD 233
Query: 301 SSAGLEFDNLERPECNNLLSIYQL--ISGKTKGEVAEECQNMNWGTF--KPLLTDALIEH 356
A + + PE + +Q IS + V E C + G K LL +
Sbjct: 234 -PARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRK 292
Query: 357 LHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFL 403
L PI + +I D Y+D V+ T+ V +AM +
Sbjct: 293 LAPIWENFRKIDEDPHYVDDVIMEGTKKAREVAAKTMEEVRRAMNLM 339
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|B Chain B, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|C Chain C, Structure Of Trprs Ii Bound To Atp
Length = 331
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 139/343 (40%), Gaps = 38/343 (11%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ-----ITLPYDTQQLS------KATRE--- 123
+ R+++G +PTG++HLG+ G+++N + LQ L D Q L+ + RE
Sbjct: 2 RPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVL 61
Query: 124 -TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK-EKSHKAGGE 181
A YLA G+D K + VQS V EL + + L + K E + K GE
Sbjct: 62 AVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGE 121
Query: 182 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXX 241
V YPV A+DI + + VPVG+DQ LE TRE+ R N
Sbjct: 122 RVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQ- 180
Query: 242 XXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 301
+ +VP R+ L DG +KMSKS + I L D D +A K+ TD
Sbjct: 181 ---LSRVP---------RLPGL-DGQAKMSKSL---GNAIALGDSADEVARKVMGMYTDP 224
Query: 302 SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWG----TFKPLLTDALIEHL 357
L + R E N + + A + Q G K L D L L
Sbjct: 225 GH-LRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVL 283
Query: 358 HPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAM 400
PI+ R E D + + + TL V +AM
Sbjct: 284 APIRTRRAEYERDPDAVLRFVTEGTARGREVAAQTLGQVRRAM 326
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|A Chain A, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|C Chain C, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YIA|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YID|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp
Length = 351
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 137/340 (40%), Gaps = 38/340 (11%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQ-----ITLPYDTQQLS------KATRE----TA 125
+++G +PTG++HLG+ G+++N + LQ L D Q L+ + RE A
Sbjct: 25 VLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVA 84
Query: 126 AIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK-EKSHKAGGENVG 184
YLA G+D K + VQS V EL + + L + K E + K GE V
Sbjct: 85 LDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVP 144
Query: 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 244
YPV A+DI + + VPVG+DQ LE TRE+ R N
Sbjct: 145 AGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQ---- 200
Query: 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304
+ +VP R+ L DG +KMSKS + I L D D +A K+ TD
Sbjct: 201 LSRVP---------RLPGL-DGQAKMSKSL---GNAIALGDSADEVARKVMGMYTDPGH- 246
Query: 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWG----TFKPLLTDALIEHLHPI 360
L + R E N + + A + Q G K L D L L PI
Sbjct: 247 LRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPI 306
Query: 361 QVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAM 400
+ R E D + + + TL V +AM
Sbjct: 307 RTRRAEYERDPDAVLRFVTEGTARGREVAAQTLGQVRRAM 346
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 98/266 (36%), Gaps = 69/266 (25%)
Query: 72 ASSSSVKKRIVSGVQPTGSIHLGNYL----------GAIKNWIALQITLPYDTQQLSK-- 119
A + + +++G P+G H G+ L K ++A+ + +++ +
Sbjct: 64 AKARGERVAVLTGFMPSGKFHFGHKLTVDQLIYLQKNGFKVFVAIADAEAFAVRRIGREE 123
Query: 120 ----ATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKS 175
A E A +A G+D + Q+ + TP ++IQ
Sbjct: 124 AVRIAVEEYIANMIALGLDPKDTEFYFQT------------NRGTP---YFRLIQLFSGK 168
Query: 176 HKAGGENVGVALLTYPVLMAS-----DILLYQSD--------FVPVGEDQKQHLELTREL 222
A LT +MAS DIL Q D VPVG DQ HL LTR+L
Sbjct: 169 VTAAEMEAIYGELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVGADQDPHLRLTRDL 228
Query: 223 AERVNXXXXXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLS--KMSKSAPSDQSR 280
A+R+ + ++ P + L GL KMS S P S
Sbjct: 229 ADRM----------------AGVVELERP-----ASTYHKLQPGLDGRKMSSSRPD--ST 265
Query: 281 INLLDPKDVIANKIKRCKTDSSAGLE 306
I L DP +V NK+ R T A E
Sbjct: 266 IFLTDPPEVARNKLFRALTGGRATAE 291
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 93/239 (38%), Gaps = 47/239 (19%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKN-------------WIALQITLPYDT-----QQLSKAT 121
R G +P+G +H+ + N W+A L D +++
Sbjct: 42 RCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVG 101
Query: 122 RETAAIYLACGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 180
R ++ A G+D K S + +H + W + IG N + + K K G
Sbjct: 102 RYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRM--VLDIGRQNTIARIK-KCCTIMG 158
Query: 181 ENVGV---ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXX 237
+ G A + YP++ DI ++D +G DQ++ L RE + +
Sbjct: 159 KTEGTLTAAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKL------- 211
Query: 238 XXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 296
+P+I + + L G +KMSKS P S I + D ++ +A KI++
Sbjct: 212 ------------KPVI-LSHHMLAGLKQGQAKMSKSDPD--SAIFMEDTEEDVARKIRQ 255
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
pdb|2CYB|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
Length = 323
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 20/161 (12%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ------ITLPYDT----------QQLSKAT 121
K R G +P+G IHLG+ + ++ + LQ I L D +++++
Sbjct: 32 KPRAYVGYEPSGEIHLGHMM-TVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVA 90
Query: 122 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQ-FKEKSHKAGG 180
+++A G+D S+A + S + + + + I LN+ + E S +
Sbjct: 91 DYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRK-- 148
Query: 181 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 221
E+ V+ + YP++ A DI D G DQ++ L RE
Sbjct: 149 EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARE 189
>pdb|2J5B|A Chain A, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
pdb|2J5B|B Chain B, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
Length = 348
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 105/254 (41%), Gaps = 58/254 (22%)
Query: 83 SGVQPTGSIHL-----------------GNYLGAIKNWIA-LQITLPYDTQQLSKATRET 124
+G +P+G IH+ G + I +W A + + + D ++ + R
Sbjct: 45 NGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYF 104
Query: 125 AAIYLACGI--DNSK---ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 179
++ ACGI D ++ AS F+ S+ +++E M ++ + I + + Q ++
Sbjct: 105 IEVFKACGINLDGTRFIWASEFIASN-PSYIERMLDIAEFSTISRVKRCCQIMGRNE--- 160
Query: 180 GENVGVALLTYPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNXXXXXXXXX 236
+ + + + YP + A+D+ D +G DQ++ L E A
Sbjct: 161 SDCLKASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRG--------- 211
Query: 237 XXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 296
K+P I + +MSL+ KMSKS P Q I + D + ++ KI R
Sbjct: 212 ---------LKIP---ISLSHHMLMSLSGPKKKMSKSDP--QGAIFMDDTEQEVSEKISR 257
Query: 297 CK-TDSSAGLEFDN 309
TD + FDN
Sbjct: 258 AYCTDET----FDN 267
>pdb|3VGJ|A Chain A, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
pdb|3VGJ|B Chain B, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
Length = 373
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 96/245 (39%), Gaps = 50/245 (20%)
Query: 77 VKKRIV--SGVQPTGSIHLGN-----------------YLGAIKNWIA-LQITLPYDTQQ 116
+K++++ G +P+G +H+ ++ I +W A L + D ++
Sbjct: 53 LKRKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKK 112
Query: 117 LSKATRETAAIYLACGIDNSK-----ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQF 171
+ K ++ +CG++ AS + + L+ +S + I + + ++
Sbjct: 113 IKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKI 172
Query: 172 KEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXX 231
+S G EN +L YP + +DI D +G DQ++ L RE +
Sbjct: 173 MGRSE--GEENYCSQIL-YPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKIKKK 229
Query: 232 XXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 291
P+I G + L +G KMSKS + S I + D + +
Sbjct: 230 -------------------PVILSHGM-LPGLLEGQEKMSKS--DENSAIFMDDSESDVN 267
Query: 292 NKIKR 296
KIK+
Sbjct: 268 RKIKK 272
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
Length = 690
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 87/239 (36%), Gaps = 47/239 (19%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKN-------------WIALQITLPYDT-----QQLSKAT 121
R G +P+G H+ + N W+A L D +++
Sbjct: 42 RCYDGFEPSGRXHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALXNDKVGGELEKIRIVG 101
Query: 122 RETAAIYLACGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 180
R ++ A G D K S + +H + W IG N + + K K G
Sbjct: 102 RYLIEVWKAAGXDXDKVLFLWSSEEITSHADTYW--RXVLDIGRQNTIARIK-KCCTIXG 158
Query: 181 ENVGV---ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXX 237
+ G A + YP+ DI ++D +G DQ++ L RE + +
Sbjct: 159 KTEGTLTAAQVLYPLXQCCDIFFLKADICQLGLDQRKVNXLAREYCDLIGRKL------- 211
Query: 238 XXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 296
+P+I + + L G +K SKS P S I D ++ +A KI++
Sbjct: 212 ------------KPVI-LSHHXLAGLKQGQAKXSKSDPD--SAIFXEDTEEDVARKIRQ 255
>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia
pdb|3FOC|B Chain B, Tryptophanyl-Trna Synthetase From Giardia Lamblia
Length = 451
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 31/129 (24%)
Query: 81 IVSGVQPT-GSIHLGNYL---------GAIKNWIALQIT----------LPYDTQQLSKA 120
I +G P+ G++HLG+ L A K ++ +QIT L Y ++
Sbjct: 94 IYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSY--AEVDSY 151
Query: 121 TRETAAIYLACGIDNSKASVFVQSH---VRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 177
TRE +ACG D K +F+ S ++ L+ PI L F +
Sbjct: 152 TRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDA-- 209
Query: 178 AGGENVGVA 186
NVG A
Sbjct: 210 ----NVGYA 214
>pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase
Complexed With Trna(Tyr) And L-Tyrosine
pdb|1U7D|A Chain A, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
pdb|1U7D|B Chain B, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
Length = 306
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 27/158 (17%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQ------ITLPYDTQ----------QLSKATRETAAI 127
G +P+G IHLG+YL IK I LQ I L D ++ K +
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 128 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 184
+ A G+ KA S + + ++ L+ T + + ++ + EN
Sbjct: 93 FEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----DENPK 145
Query: 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 222
VA + YP++ +DI D G +Q++ L REL
Sbjct: 146 VAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHMLAREL 183
>pdb|3D6U|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
pdb|3D6V|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
Length = 314
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ 107
+K + G +P+G IHLG+YL IK I LQ
Sbjct: 28 EKSAIIGFEPSGKIHLGHYL-QIKKMIDLQ 56
>pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna
Sythetase In Complex With P-Bromo-L-Phenylalanine
Length = 314
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ 107
+K + G +P+G IHLG+YL IK I LQ
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQ 56
>pdb|1ZH0|A Chain A, Crystal Structure Of L-3-(2-Napthyl)alanine-Trna
Synthetase In Complex With L-3-(2-Napthyl)alanine
Length = 314
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ 107
+K + G +P+G IHLG+YL IK I LQ
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQ 56
>pdb|1ZH6|A Chain A, Crystal Structure Of P-Acetylphenylalanine-Trna Synthetase
In Complex With P-Acetylphenylalanine
Length = 314
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ 107
+K + G +P+G IHLG+YL IK I LQ
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQ 56
>pdb|2ZP1|A Chain A, Structual Basis Of Iodo-Tyrosine Recognition By Engineered
Archeal Tyrosyl-Trna Synthetase
Length = 314
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQ 107
G +P+G IHLG+YL IK I LQ
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQ 56
>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
pdb|1U7X|B Chain B, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
Length = 312
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQ 107
G +P+G IHLG+YL IK I LQ
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQ 56
>pdb|2HGZ|A Chain A, Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trna
Synthetase
Length = 306
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQ 107
G +P+G IHLG+YL IK I LQ
Sbjct: 33 GFEPSGKIHLGHYL-QIKKMIDLQ 55
>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
pdb|3N2Y|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
Length = 314
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ 107
+K + G +P+G IHLG+YL IK I LQ
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQ 56
>pdb|2CYA|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase From
Aeropyrum Pernix
Length = 364
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 175 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 227
+A V + L YP++ SDI D G DQ++ L R++AE++
Sbjct: 150 GRRAEEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLG 202
>pdb|3QE4|A Chain A, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
pdb|3QE4|B Chain B, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
Length = 312
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQ 107
G +P+G IHLG+YL IK I LQ
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQ 56
>pdb|2PXH|A Chain A, Crystal Structure Of A Bipyridylalanyl-Trna Synthetase
Length = 314
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQ 107
G +P+G IHLG+YL IK I LQ
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQ 56
>pdb|3LY7|A Chain A, Crystal Structure Of The Periplasmic Domain Of Cadc
pdb|3LYA|A Chain A, Crystal Structure Of The Periplasmic Domain Of Cadc In The
Presence Of K2recl6
Length = 372
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 306 EFDNL-ERPECNNLLSIYQL--ISGKTKGEVAEECQNMNWG 343
E DN+ PE NNL IYQ+ +S KG+ E Q +N G
Sbjct: 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303
>pdb|3LY9|A Chain A, Crystal Structure Of Mutant D471n Of The Periplasmic
Domain Of Cadc
Length = 372
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 306 EFDNL-ERPECNNLLSIYQL--ISGKTKGEVAEECQNMNWG 343
E DN+ PE NNL IYQ+ +S KG+ E Q +N G
Sbjct: 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303
>pdb|3LY8|A Chain A, Crystal Structure Of Mutant D471e Of The Periplasmic
Domain Of Cadc
Length = 372
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 306 EFDNL-ERPECNNLLSIYQL--ISGKTKGEVAEECQNMNWG 343
E DN+ PE NNL IYQ+ +S KG+ E Q +N G
Sbjct: 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303
>pdb|1R5S|A Chain A, Connexin 43 Carboxyl Terminal Domain
Length = 132
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 17/74 (22%)
Query: 30 GLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTG 89
G PSK C +P A NGC S PTAP++ S ++V+G +
Sbjct: 4 GSPSKDCGSP-------KYAYFNGC----------SSPTAPLSPMSPPGYKLVTGDRNNS 46
Query: 90 SIHLGNYLGAIKNW 103
S N + +NW
Sbjct: 47 SCRNYNKQASEQNW 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,552,582
Number of Sequences: 62578
Number of extensions: 394251
Number of successful extensions: 1018
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 917
Number of HSP's gapped (non-prelim): 55
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)