BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015509
(405 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8DHG3|SYW_THEEB Tryptophan--tRNA ligase OS=Thermosynechococcus elongatus (strain
BP-1) GN=trpS PE=3 SV=1
Length = 330
Score = 398 bits (1023), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/336 (60%), Positives = 240/336 (71%), Gaps = 23/336 (6%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRETAA 126
++SGVQPTGS+HLGNYLGAI+NW+A Q IT+P+D +L+ T AA
Sbjct: 1 MLSGVQPTGSLHLGNYLGAIRNWVAGQAEYENYFCVVDLHAITVPHDPAELAANTYTVAA 60
Query: 127 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 186
+YLACGID + A++FVQSHV AH EL WLL+ TP+ WL MIQFKEK+ K G ENV
Sbjct: 61 LYLACGIDPAHATIFVQSHVSAHAELTWLLNCITPLNWLEDMIQFKEKAVKQG-ENVAAG 119
Query: 187 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 246
LL YPVLMA+DILLY +D VPVGEDQKQHLELTR++A RVNYL+ + I
Sbjct: 120 LLDYPVLMAADILLYDADLVPVGEDQKQHLELTRDIAARVNYLFARNQ--------PPIL 171
Query: 247 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLE 306
K+PEPLIP AGARVMSLTDG KMSKS PS+ SRINLLD D I KIKRCKTD GL
Sbjct: 172 KLPEPLIPKAGARVMSLTDGTKKMSKSDPSELSRINLLDSPDEIRKKIKRCKTDPIRGLA 231
Query: 307 FDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEE 366
FD+ +RPE NNLLS+YQ+++GKTK VA EC +M WG FKPLLTDA+I L PIQ RY E
Sbjct: 232 FDDPDRPEANNLLSLYQVLTGKTKEAVAAECADMGWGQFKPLLTDAVIATLEPIQQRYNE 291
Query: 367 IMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 402
IM+D +YL +L G +AA +A+ATL V A GF
Sbjct: 292 IMADPSYLKDLLKKGQEQAATVANATLERVKLAFGF 327
>sp|Q8YXE4|SYW_NOSS1 Tryptophan--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=trpS PE=3 SV=1
Length = 335
Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/339 (57%), Positives = 239/339 (70%), Gaps = 24/339 (7%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRE 123
K+R++SGVQPTG++HLGNYLGAI+NW+ +Q IT+P++ L+ T
Sbjct: 3 KQRVLSGVQPTGNLHLGNYLGAIRNWVEIQDQYDNFFCVVDLHAITVPHNPATLAADTYA 62
Query: 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 183
AA+YLACGID +++FVQSHV AH EL W L+ TP+ WL MIQFKEK+ K G ENV
Sbjct: 63 IAALYLACGIDLKYSNIFVQSHVSAHSELAWFLNCITPLNWLQDMIQFKEKAVKQG-ENV 121
Query: 184 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 243
G LL YPVLMA+DILLYQ+D VPVGEDQKQHLELTR++ R N+ + K
Sbjct: 122 GAGLLIYPVLMAADILLYQADKVPVGEDQKQHLELTRDIVNRFNHQFAKDK--------- 172
Query: 244 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 303
+ K+PEPLI GARVMSLTDG KMSKS PS+ SRINLLDP D IANKIKRCKTD
Sbjct: 173 PVMKLPEPLIRKEGARVMSLTDGTRKMSKSDPSELSRINLLDPPDQIANKIKRCKTDPVK 232
Query: 304 GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVR 363
GL FD+ ERPECNNLL++Y L+SGK K EVA ECQ+M WG FKPL T+ I L PIQ +
Sbjct: 233 GLTFDDPERPECNNLLTLYMLLSGKKKEEVAAECQDMGWGQFKPLFTETAINALKPIQEK 292
Query: 364 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 402
Y+EI +D YL+ VL DG KA +A+ TL +V A+G+
Sbjct: 293 YQEITADKGYLESVLRDGREKAETVANQTLADVKAALGY 331
>sp|Q7TV34|SYW_PROMM Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain MIT
9313) GN=trpS PE=3 SV=1
Length = 337
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/341 (53%), Positives = 237/341 (69%), Gaps = 24/341 (7%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRE 123
+ R++SGVQPTG++HLGN+LGAI+NW+ LQ IT+P+D ++L++ +
Sbjct: 3 RPRVLSGVQPTGALHLGNWLGAIRNWVDLQSSHDTYVCVVDLHAITVPHDPERLAEESLS 62
Query: 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 183
TAA+YLACG+D S+FVQS V AH EL WLL+ TP+ WL +MIQFKEKS K G +NV
Sbjct: 63 TAALYLACGMDPDLCSIFVQSQVSAHSELCWLLNCVTPLNWLERMIQFKEKSVKQG-DNV 121
Query: 184 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE-RVNYLYGGRKWKKLGGRG 242
V LL YPVLMA+DILLY +D VPVGEDQKQHLEL R++A+ R+N +G +
Sbjct: 122 SVGLLDYPVLMAADILLYDADLVPVGEDQKQHLELARDIAQQRINARFGSEE-------- 173
Query: 243 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 302
+ KVP+PLI GARVMSL+DG SKMSKS P++ SRI LLDP ++I KIKR KTD
Sbjct: 174 KPVLKVPDPLIIKEGARVMSLSDGRSKMSKSDPNEGSRITLLDPPELITKKIKRAKTDPQ 233
Query: 303 AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQV 362
GL+F N +RPE +NLL IY ++SG+ + A+EC M WGTFKPLL DA + L PIQ
Sbjct: 234 MGLQFGNPDRPEADNLLGIYAILSGRGRDAAAQECAEMGWGTFKPLLADATVSALEPIQH 293
Query: 363 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
RY+++M D L +VL G +A + A ATL V QA+GFL
Sbjct: 294 RYQQLMGDRIELIRVLDQGRTRAEETAQATLQRVRQALGFL 334
>sp|P73655|SYW_SYNY3 Tryptophan--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=trpS PE=3 SV=2
Length = 337
Score = 359 bits (922), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 188/340 (55%), Positives = 235/340 (69%), Gaps = 23/340 (6%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRE 123
K RI+SGVQPTG++HLGNYLGAI++W+ Q IT+P++ Q L++ T
Sbjct: 3 KPRILSGVQPTGNLHLGNYLGAIRSWVEQQQHYDNFFCVVDLHAITVPHNPQTLAQDTLT 62
Query: 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 183
AA+YLACGID +++FVQSHV AH EL WLL+ TP+ WL +MIQFKEK+ K G ENV
Sbjct: 63 IAALYLACGIDLQYSTIFVQSHVAAHSELAWLLNCVTPLNWLERMIQFKEKAVKQG-ENV 121
Query: 184 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 243
V LL YPVLMA+DILLY +D VPVGEDQKQHLELTR++ R+N K G
Sbjct: 122 SVGLLDYPVLMAADILLYDADKVPVGEDQKQHLELTRDIVIRIN--------DKFGREDA 173
Query: 244 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 303
+ K+PEPLI GARVMSL DG KMSKS S+ SRINLLDP ++I K+K+CKTD
Sbjct: 174 PVLKLPEPLIRKEGARVMSLADGTKKMSKSDESELSRINLLDPPEMIKKKVKKCKTDPQR 233
Query: 304 GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVR 363
GL FD+ ERPEC+NLL++Y L+S +TK VA+EC M WG FKPLLT+ I L PIQ +
Sbjct: 234 GLWFDDPERPECHNLLTLYTLLSNQTKEAVAQECAEMGWGQFKPLLTETAIAALEPIQAK 293
Query: 364 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
Y EI++D LD+++ G AKA+ A TL V A+GFL
Sbjct: 294 YAEILADRGELDRIIQAGNAKASQTAQQTLARVRDALGFL 333
>sp|Q7TTU9|SYW_SYNPX Tryptophan--tRNA ligase OS=Synechococcus sp. (strain WH8102)
GN=trpS PE=3 SV=1
Length = 337
Score = 356 bits (914), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 183/342 (53%), Positives = 239/342 (69%), Gaps = 24/342 (7%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRE 123
+ R++SGVQPTG++HLGN+LGAI+NW+ LQ IT+P+D +L+ T
Sbjct: 3 RPRVLSGVQPTGALHLGNWLGAIRNWVDLQDTHDTFVCVVDLHAITVPHDPARLADDTLN 62
Query: 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 183
TAA+YLACG+D + S+F+QS V AH EL WLL+ TP+ WL +MIQFKEK+ K G +NV
Sbjct: 63 TAALYLACGMDPQRCSIFIQSQVAAHSELCWLLNCVTPLNWLERMIQFKEKAVKQG-DNV 121
Query: 184 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE-RVNYLYGGRKWKKLGGRG 242
V LL YPVLMA+DILLY +D VPVGEDQKQHLEL R++A+ R+N +G +
Sbjct: 122 SVGLLDYPVLMAADILLYDADLVPVGEDQKQHLELARDIAQQRINARFGSEE-------- 173
Query: 243 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 302
+ KVP+PLI GARVMSLTDG SKMSKS P++ SRI LLDP ++I KIKR KTD
Sbjct: 174 RPVLKVPKPLILKEGARVMSLTDGRSKMSKSDPNEGSRITLLDPPELITKKIKRAKTDPK 233
Query: 303 AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQV 362
GLEF N +RPE +NLL +Y ++SGK + A+EC +M WG FKPLL DA + L PIQ
Sbjct: 234 RGLEFSNPDRPETDNLLGLYAILSGKGREAAADECADMGWGQFKPLLADAAVAALEPIQA 293
Query: 363 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 404
R++E+M+D LD+VLA G +A +A+A+L V A+GF +
Sbjct: 294 RHKELMADRVELDRVLAKGRDQAESVANASLERVRDALGFAK 335
>sp|Q7VBM9|SYW_PROMA Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=trpS PE=3 SV=1
Length = 339
Score = 353 bits (906), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 180/343 (52%), Positives = 237/343 (69%), Gaps = 24/343 (6%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRE 123
KKR++SGVQPTG+IH+GN+LGAI+NW++LQ IT+P+D QQL + T
Sbjct: 3 KKRVLSGVQPTGAIHIGNWLGAIRNWVSLQNEYDTYVCVVDLHAITVPHDPQQLKENTLR 62
Query: 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 183
TAA+Y+ACG+D K S+FVQSH+ AH EL WLL+ TP+ W+ +MIQFKEK+ K G +NV
Sbjct: 63 TAALYVACGMDPKKCSIFVQSHISAHSELCWLLNCVTPLNWMERMIQFKEKAIKQG-DNV 121
Query: 184 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE-RVNYLYGGRKWKKLGGRG 242
+ LL YPVLMA+DILLY +D VPVGEDQKQHLEL R++A+ RVN +
Sbjct: 122 SIGLLDYPVLMAADILLYDADLVPVGEDQKQHLELARDIAQQRVN--------SRFNKES 173
Query: 243 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 302
+I K+P+PLI G ++MSL DG KMSKS P++ SRI LLD ++I KIKR KTDS
Sbjct: 174 KSILKIPKPLIMKEGGKIMSLIDGNMKMSKSDPNENSRIALLDSPEIIKKKIKRAKTDSF 233
Query: 303 AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQV 362
GLEFDN +RPE NNLL IY ++S + + V +E N+ WG FKP+LTDA+IE L+PIQ
Sbjct: 234 LGLEFDNNQRPEANNLLGIYSMVSNQNREAVQKEFSNIGWGKFKPILTDAIIESLNPIQQ 293
Query: 363 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
+Y ++ D L+ +L G KA I++ TL V A+GFL +
Sbjct: 294 KYYSLIKDKTELNNILNKGYIKANTISNQTLKRVRNALGFLDK 336
>sp|Q7NCG8|SYW_GLOVI Tryptophan--tRNA ligase OS=Gloeobacter violaceus (strain PCC 7421)
GN=trpS PE=3 SV=1
Length = 336
Score = 347 bits (889), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 177/347 (51%), Positives = 229/347 (65%), Gaps = 28/347 (8%)
Query: 71 VASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQ 116
+ S+ KRI+SG QPTG +HLGNYLGA++NW++ Q +T+P + +
Sbjct: 1 MPDDSTAPKRILSGAQPTGQLHLGNYLGAVRNWVSEQRQYDSYFCVVDLHALTVPQEAAE 60
Query: 117 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 176
L ATR TAA+YLACGID +++VFVQSHV AH EL WL + TPI WL +MIQFKEK+
Sbjct: 61 LRAATRRTAALYLACGIDPERSTVFVQSHVSAHTELTWLFNCLTPINWLERMIQFKEKAI 120
Query: 177 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 236
K GE VG+ L YPVL A+DILLY+ VPVGEDQ+QHLELTR++A R N Y
Sbjct: 121 KL-GEEVGIGLFDYPVLQAADILLYEPHLVPVGEDQRQHLELTRDIARRFNDRY------ 173
Query: 237 KLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 296
G +VPE LI GARVMSL DG SKMSKS PSD SR+NLLD + + +KIKR
Sbjct: 174 ------GESLRVPEMLIRKEGARVMSLQDGTSKMSKSDPSDLSRLNLLDAPEKLRDKIKR 227
Query: 297 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 356
K+D+ GL+FD RPEC NLL+IYQL+SG++ V + +G FKP+L D +IE+
Sbjct: 228 AKSDAVMGLKFDP-ARPECTNLLTIYQLLSGESPEAVEARFADAGFGRFKPILADLVIEY 286
Query: 357 LHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
L PI+ RY+ I +S YL+ +L +GA +A+ +A TL + MG L
Sbjct: 287 LRPIRERYDAIAGESGYLEGILREGALRASKVAGLTLERIRDRMGLL 333
>sp|Q7V286|SYW_PROMP Tryptophan--tRNA ligase OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=trpS PE=3 SV=1
Length = 338
Score = 343 bits (879), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 171/342 (50%), Positives = 228/342 (66%), Gaps = 25/342 (7%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRE 123
KKRI+SGVQPTG +H+GN+LGAI NW+ LQ IT YDT+QLSK T
Sbjct: 4 KKRILSGVQPTGDLHIGNWLGAINNWVELQEKHETFLCVVDLHAITTEYDTKQLSKNTLS 63
Query: 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 183
TAA+Y+ACGI+ S+FVQS + AH EL W+L+ TPI W+ +MIQFKEKS + G NV
Sbjct: 64 TAALYIACGINPKICSIFVQSQISAHSELCWILNCMTPINWMERMIQFKEKSIQQGN-NV 122
Query: 184 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE-RVNYLYGGRKWKKLGGRG 242
+ L YP+LMA+DILLY +D+VPVGEDQKQHLEL +++A+ R+N +G +
Sbjct: 123 SIGLFDYPILMAADILLYDADYVPVGEDQKQHLELAKDIAQQRINAKFGKEE-------- 174
Query: 243 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 302
I K+P+P+I G+++MSL DG KMSKS ++ SRINLLD ++I KIKR K+DS
Sbjct: 175 -NILKIPQPIIMKKGSKIMSLNDGSKKMSKSDINEGSRINLLDTPEIITKKIKRAKSDSY 233
Query: 303 AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQV 362
G+EF+N ERPE NLL IY L+SGK E+ + WGTFK + T+ +IE L PIQ
Sbjct: 234 MGMEFNNPERPESRNLLMIYSLLSGKEVSELENDLSQTGWGTFKKIFTEQIIESLKPIQE 293
Query: 363 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 404
RY+ +++D L+K+L G KA +A+ TL+ V +GF
Sbjct: 294 RYQVLINDPHELNKILIQGKEKAEVVANKTLSRVKSELGFFE 335
>sp|Q92HR1|SYW_RICCN Tryptophan--tRNA ligase OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=trpS PE=3 SV=1
Length = 330
Score = 296 bits (757), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 158/341 (46%), Positives = 214/341 (62%), Gaps = 26/341 (7%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATR 122
+KK ++SGVQ TGS+HLGNYLGAIKNW+ +Q IT+ +L+ +
Sbjct: 1 MKKTVLSGVQATGSLHLGNYLGAIKNWVKMQEEYNCFFFLADLHAITVDIKPSELNNSIM 60
Query: 123 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 182
E A+YLA G++ K ++F QS V+ H EL WLL+ TP+GWL +M QFK+K+ + E
Sbjct: 61 EVLAVYLAAGLNPDKVTIFAQSMVKEHTELAWLLNCVTPLGWLKRMTQFKDKA-GSDQEK 119
Query: 183 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 242
+ L +YPVLMA+DIL+Y++D VPVGEDQKQHLELTR++A +N RK+ K
Sbjct: 120 ACLGLFSYPVLMAADILIYKADIVPVGEDQKQHLELTRDIAGVIN-----RKFNK----- 169
Query: 243 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 302
I KVPE LI G R+MSL DGL KMSKS SD SRINL D D+I KIK+ KTD
Sbjct: 170 -EILKVPEVLISETGTRIMSLRDGLKKMSKSDISDFSRINLKDDNDLIHQKIKKAKTDHL 228
Query: 303 AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQV 362
+ + +D RPE +NLL IY +S ++ ++ QN + FK L + +I +L PI+
Sbjct: 229 SFVSYDQETRPEISNLLDIYSSLSEESLEQIIGNYQNQGFAKFKEDLAEIIITNLQPIRD 288
Query: 363 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
+Y E+M+D YL K+L GA KA A T+N V + GF+
Sbjct: 289 KYLELMNDKEYLLKILHKGAEKARIRASETVNEVKEQFGFV 329
>sp|Q9ZD76|SYW_RICPR Tryptophan--tRNA ligase OS=Rickettsia prowazekii (strain Madrid E)
GN=trpS PE=3 SV=1
Length = 330
Score = 291 bits (746), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 155/341 (45%), Positives = 216/341 (63%), Gaps = 26/341 (7%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATR 122
+KK ++SGVQ TG++HLGNYLG+I+NWI +Q IT+ T +L+ A
Sbjct: 1 MKKTVLSGVQTTGALHLGNYLGSIRNWIKMQEEYNCFFFLADLHAITIDIKTSELNDAIM 60
Query: 123 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 182
E AIYLA G++ K ++F QS V+ HVEL WLL+ TP+GWL +M QFK+K+ A +
Sbjct: 61 EVLAIYLAAGLNPDKVTIFAQSMVKEHVELSWLLNCVTPLGWLKRMTQFKDKAGSAQCK- 119
Query: 183 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 242
+ L YP+LMA+DIL+Y++D VPVGEDQKQHLELTR++AE +N R++ K
Sbjct: 120 ACLGLFAYPILMAADILIYKADIVPVGEDQKQHLELTRDIAEVIN-----RRFDK----- 169
Query: 243 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 302
I KVP+ LI G R+MSL +GL KMSKS SD SRINL D D+I KIK+ KTD
Sbjct: 170 -EILKVPDILISETGTRIMSLRNGLKKMSKSDISDFSRINLKDSNDLIHQKIKKAKTDHL 228
Query: 303 AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQV 362
+ + ++ RPE +NLL IY+ S ++ ++ + QN + FK L + +I +L PI+
Sbjct: 229 SFISYNKKTRPEISNLLDIYKSFSKESIEKIIDNYQNQGFAKFKEDLAEIIITNLQPIRN 288
Query: 363 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
+ E+M+D YL K+L GA KA A T+N V + GF+
Sbjct: 289 KCLELMNDKEYLLKILHKGAQKARIRASETVNEVKKQFGFI 329
>sp|Q4UL98|SYW_RICFE Tryptophan--tRNA ligase OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=trpS PE=3 SV=1
Length = 330
Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 154/341 (45%), Positives = 214/341 (62%), Gaps = 26/341 (7%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATR 122
+KK ++SGVQ TGS+HLGNYLG+I+NW+ +Q IT+ +L+ +
Sbjct: 1 MKKTVLSGVQATGSLHLGNYLGSIRNWVKMQEEYNCFFFLADLHAITVDIKPSELNNSIM 60
Query: 123 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 182
A+YLA G++ K ++F QS V+ H EL WLL+ TP+GWL +M QFK+K+ + E
Sbjct: 61 GVLAVYLAAGLNPDKVTIFAQSMVKEHAELAWLLNCVTPLGWLKRMTQFKDKA-GSDQEK 119
Query: 183 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 242
+ L +YPVLMA+DIL+Y++D VPVGEDQKQHLELTR++A +N R++ K
Sbjct: 120 ACLGLFSYPVLMAADILIYKADIVPVGEDQKQHLELTRDIAGVIN-----RRFDK----- 169
Query: 243 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 302
I KVPE LI G R+MSL DGL KMSKS SD SRINL D D+I KIK+ KTD
Sbjct: 170 -EILKVPEVLISETGTRIMSLRDGLKKMSKSDISDFSRINLKDDNDLIHQKIKKAKTDHL 228
Query: 303 AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQV 362
+ + +D RPE +NLL IY+ +S ++ ++ QN + FK L + +I +L PI+
Sbjct: 229 SFVSYDKETRPEISNLLDIYRSLSEESLEKIINNYQNQGFSKFKEDLAEIIITNLQPIRD 288
Query: 363 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
+Y E+M+D YL K+L GA KA A T+N V + GF+
Sbjct: 289 KYLELMNDKEYLLKILHKGAEKARIRASETVNEVKEQFGFV 329
>sp|Q68WR2|SYW_RICTY Tryptophan--tRNA ligase OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=trpS PE=3 SV=1
Length = 330
Score = 290 bits (741), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 154/343 (44%), Positives = 215/343 (62%), Gaps = 30/343 (8%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATR 122
+KK ++SGVQ TG++HLGNYLG+IKNW+ +Q IT+ T +L+ +
Sbjct: 1 MKKTVLSGVQTTGALHLGNYLGSIKNWVKMQEEYNCFFFLADLHAITIDIKTSELNNSIM 60
Query: 123 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 182
E AIYLA G++ K ++F QS V+ H EL WLL+ TP+GWL +M QFK+K AG +
Sbjct: 61 EVLAIYLAAGLNPDKVTIFAQSMVKEHAELSWLLNCVTPLGWLKRMTQFKDK---AGSDQ 117
Query: 183 VG--VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 240
+ L YP+LMA+DIL+Y++D VPVGEDQKQHLELTR++AE +N R++ K
Sbjct: 118 CKACLGLFAYPILMAADILIYKADIVPVGEDQKQHLELTRDIAEVIN-----RRFDK--- 169
Query: 241 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 300
I KVP+ LI G R+MSL +GL KMSKS +D SRINL D D+I KIK+ KTD
Sbjct: 170 ---EILKVPDILISETGTRIMSLRNGLKKMSKSDIADFSRINLKDSNDLIYQKIKKAKTD 226
Query: 301 SSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPI 360
+ + +D RPE +NLL IY+ +S ++ ++ QN + FK L + +I +L PI
Sbjct: 227 HLSFISYDKKTRPEISNLLDIYKSLSKESMEKIINNYQNQGFAKFKEDLAEIIITNLQPI 286
Query: 361 QVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
+ + E+M+D YL K+L GA KA A T+N V + GF+
Sbjct: 287 RDKCLELMNDKEYLLKILHKGAEKAKIRASETVNEVKKQFGFI 329
>sp|Q7MAE0|SYW_WOLSU Tryptophan--tRNA ligase OS=Wolinella succinogenes (strain ATCC
29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W)
GN=trpS PE=3 SV=1
Length = 328
Score = 287 bits (734), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 153/341 (44%), Positives = 205/341 (60%), Gaps = 28/341 (8%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATR 122
+KKR+ SG+QPTG+IHLGNYLGA+KNW+ Q IT+ D L T
Sbjct: 2 IKKRVFSGIQPTGNIHLGNYLGAVKNWVDSQDEFDNIFCIVNSHAITIKQDPALLRAKTY 61
Query: 123 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 182
E AA+ LACGID K+ +F+QS V H L W+L P+G +++M QFK+KS K +N
Sbjct: 62 ELAAVLLACGIDMKKSKLFIQSEVDEHAALAWILDCNIPMGDMSRMTQFKDKSQK-NPKN 120
Query: 183 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 242
+ + L YP LMA+DILLYQ+DFVPVGEDQKQHLELTR++AER N Y
Sbjct: 121 INIGLFNYPALMAADILLYQTDFVPVGEDQKQHLELTRDVAERFNRDY------------ 168
Query: 243 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 302
G FK+PEP+IP GAR+M L D KMSKS I LLD D I K K+ TDS
Sbjct: 169 GETFKIPEPMIPKMGARIMGLDDPTKKMSKSEGKPNHGIALLDTPDEILKKFKKATTDSE 228
Query: 303 AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQV 362
+ F N E+ NLL+IYQ+ +G ++ + E + +G FK + +A+IE L PIQ
Sbjct: 229 NLVRF-NPEQIGIFNLLTIYQIFTGYSQEVIEAEFEGKGYGIFKVAVAEAVIEGLKPIQE 287
Query: 363 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
RY ++ + YL++VL+ GA++ IA T V + +G +
Sbjct: 288 RYAKLTKEQGYLEEVLSHGASEVRKIAQKTYKEVKERVGLI 328
>sp|Q9K8Y2|SYW_BACHD Tryptophan--tRNA ligase OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=trpS PE=3
SV=1
Length = 330
Score = 283 bits (725), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 157/343 (45%), Positives = 210/343 (61%), Gaps = 29/343 (8%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATR 122
+KK + SG+QP+G++ LGNYLGA+K++++LQ IT+P D +L + R
Sbjct: 1 MKKTVFSGIQPSGTLTLGNYLGAMKHFVSLQEDYNCYFCIVDQHAITVPQDRLKLRENIR 60
Query: 123 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 182
AA+YLA GID SKA++F+QS V AH +L W++ + IG L +M QFK+KS G E
Sbjct: 61 SLAALYLAVGIDPSKATLFIQSEVPAHAQLGWMMQCVSYIGELERMTQFKDKSD--GKEA 118
Query: 183 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 242
V +LLTYP LMA+DILLY ++ VPVGEDQKQHLELTR+LAER N Y
Sbjct: 119 VSASLLTYPPLMAADILLYHTNIVPVGEDQKQHLELTRDLAERFNKKYND---------- 168
Query: 243 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 302
IF +PE IP GAR+MSL D KMSKS P+ +S I++LD + I KIK TDS
Sbjct: 169 --IFTIPEVQIPKVGARIMSLNDPSKKMSKSNPNPKSYISMLDDEKTITKKIKSAVTDSD 226
Query: 303 AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQV 362
++FD +P +NLLSIY L G + EV + +G FK L +++ L PIQ
Sbjct: 227 GIVKFDKENKPAISNLLSIYSLCKGASIEEVEAQFVGKGYGEFKESLAQVVVDTLKPIQE 286
Query: 363 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
RYE+++ S LD +L GA KA +A TL +AMG R+
Sbjct: 287 RYEQLIQ-SEELDHILDQGADKANRVARKTLEKAERAMGLGRK 328
>sp|Q8R9X8|SYW_THETN Tryptophan--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=trpS PE=3
SV=1
Length = 327
Score = 283 bits (723), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 154/341 (45%), Positives = 207/341 (60%), Gaps = 30/341 (8%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRET 124
KR+ SGVQP+G IH+GNYLGA++ ++ALQ +T+P D +L K T E
Sbjct: 2 KRVFSGVQPSGDIHIGNYLGAMRQFVALQDDYDCFFCVVDLHALTVPQDPVELKKNTIEL 61
Query: 125 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 184
AA+Y+A G+D K ++FVQSHV AH EL WLL T G L++M QFKEKS G E+V
Sbjct: 62 AALYMAIGLDPKKVTLFVQSHVSAHAELAWLLQCITYFGELSRMTQFKEKSK--GKESVS 119
Query: 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 244
V L TYP LMA+DILLY++ +VPVGEDQKQHLELTR++A+R N R G
Sbjct: 120 VGLFTYPDLMAADILLYKTHYVPVGEDQKQHLELTRDVAQRFN------------NRFGE 167
Query: 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304
F +PEP+I GAR+MSLT+ KMSKS +R+NLLD D I KI + TDS +
Sbjct: 168 TFVIPEPMILKFGARIMSLTNPTKKMSKSDADPNNRVNLLDDPDTIYRKIMKAVTDSESE 227
Query: 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 364
+ D ++P +NLL+IY L +G EV + + +GT K L + +I+ L IQ Y
Sbjct: 228 IRLDWEKKPGISNLLTIYSLFTGMEVDEVVNKFKGQGYGTLKKELAEVVIDKLSVIQKNY 287
Query: 365 EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
+I + +VL +GA +A +A TL V + MG + R
Sbjct: 288 RDISEEEVL--RVLKEGAERAEAVAVETLKEVKEKMGLILR 326
>sp|Q9AC05|SYW_CAUCR Tryptophan--tRNA ligase OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=trpS PE=3 SV=1
Length = 344
Score = 281 bits (720), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 156/339 (46%), Positives = 208/339 (61%), Gaps = 27/339 (7%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRETA 125
R++SGVQP+G++HLGNYLGA+ + LQ IT+ D L++ TRE A
Sbjct: 14 RVLSGVQPSGALHLGNYLGALVKFTRLQHEIDTFIFVADLHAITVWQDPAALAQQTREIA 73
Query: 126 AIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGV 185
A Y+A G+D KA++F QS VR H EL W+ + +GWL++M QFKEKS K E V
Sbjct: 74 AAYIASGLDPDKATIFPQSAVREHAELSWIFNCVARLGWLDRMTQFKEKSGK-HKERSSV 132
Query: 186 ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAI 245
L TYPVL A+DIL+Y++ VPVGEDQKQHLELTR++A++ N+ +
Sbjct: 133 GLYTYPVLQAADILIYKATHVPVGEDQKQHLELTRDIAQKFNHDFNAP----------GF 182
Query: 246 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGL 305
F +P+PLI GARVMSL DG +KMSKS PSD SRINL D D IA K+K+ +TD
Sbjct: 183 FPLPDPLIQGPGARVMSLRDGSAKMSKSDPSDYSRINLTDTADDIAAKVKKARTDPEPLP 242
Query: 306 E-FDNL-ERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVR 363
E + L R E +NL+ I+ ++GKTK EV + +GTFKP L + +E L P+ R
Sbjct: 243 ETIEELATRAEADNLVGIFAALAGKTKAEVLADYAGKGFGTFKPALAELAVESLAPVGER 302
Query: 364 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 402
++ D A LD +LA GA KA + A TL V + +GF
Sbjct: 303 MRGLLGDPAVLDAILAKGAEKAREAAAPTLAEVKKLVGF 341
>sp|Q7VIP6|SYW_HELHP Tryptophan--tRNA ligase OS=Helicobacter hepaticus (strain ATCC
51449 / 3B1) GN=trpS PE=3 SV=1
Length = 332
Score = 281 bits (720), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 153/345 (44%), Positives = 201/345 (58%), Gaps = 28/345 (8%)
Query: 73 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLS 118
S +S KKRI SG+QPTG+IHLGNYLGA+++W+ Q IT+ D Q+L
Sbjct: 2 SHTSSKKRIFSGIQPTGNIHLGNYLGAVRHWVDSQEQYENIFCVVNSHAITIRQDPQELQ 61
Query: 119 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 178
T E A I LACGID K+ +F+QS + H L W+L P+G +++M QFK+KS+K
Sbjct: 62 NKTYELAGILLACGIDTKKSHLFIQSQIDEHAALAWILDCNIPMGDMSRMTQFKDKSNK- 120
Query: 179 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 238
+N+ V L YP LMA+DILLYQ+DFVPVGEDQKQHLELTR++A R N Y
Sbjct: 121 NPKNINVGLFNYPALMAADILLYQADFVPVGEDQKQHLELTRDVAMRFNRDY-------- 172
Query: 239 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 298
G F +PEP+IP GARVM L + SKMSKSA + I LLD DVI K K+
Sbjct: 173 ----GECFNIPEPMIPQVGARVMGLDNPQSKMSKSAQGENHAIFLLDSPDVITRKCKKAV 228
Query: 299 TDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLH 358
TDS + + FD R NLL IY++ + K++ + E + +G K L + +IE L
Sbjct: 229 TDSQSNIVFDE-SRAGLYNLLCIYEIFTQKSRKSIEAEFEGKGYGHLKMALAEVIIESLR 287
Query: 359 PIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
PIQ Y +I D Y+ VL A IA T N + +G +
Sbjct: 288 PIQQSYAKISQDKTYIQSVLTKSADSIRPIAKNTYENAKRLVGLV 332
>sp|Q81TS6|SYW_BACAN Tryptophan--tRNA ligase OS=Bacillus anthracis GN=trpS PE=3 SV=1
Length = 329
Score = 276 bits (707), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/339 (45%), Positives = 206/339 (60%), Gaps = 29/339 (8%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRETAA 126
I SG+QP+G+I LGNYLGA+K + LQ IT+P D QL K R AA
Sbjct: 4 IFSGIQPSGTITLGNYLGAMKQFTELQNEHDCYFCIVNQHAITVPQDPVQLRKNIRSLAA 63
Query: 127 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 186
+Y+ACGID KA++FVQS V AH +L W++ S +G L +M Q+K+K+ +G ++V
Sbjct: 64 LYVACGIDPEKATLFVQSEVPAHAQLGWIMQSVAYVGELERMTQYKDKA--SGRDSVPAG 121
Query: 187 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 246
LLTYP LMA+DILLY ++ VPVG+DQKQH+ELTR+LAER N R +F
Sbjct: 122 LLTYPPLMAADILLYNTEIVPVGDDQKQHMELTRDLAERFN------------KRFREVF 169
Query: 247 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLE 306
+PE IP GARVMSLT+ KMSKS P+ +S I++LD I KIK TDS ++
Sbjct: 170 TIPEIRIPKVGARVMSLTEPTKKMSKSDPNPKSMISMLDEPKTIEKKIKSAVTDSEGIVK 229
Query: 307 FDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEE 366
FD +P +NLL+IY SGKT E+ + +G FK L ++E + PIQ +Y E
Sbjct: 230 FDKENKPGISNLLTIYSSFSGKTVEEIEAMYEGKGYGDFKGDLAQVVVEAIRPIQDKYNE 289
Query: 367 IMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
++ +S LD++L GA KA +A L V AMG R+
Sbjct: 290 LI-NSPELDEILDKGAEKANRVAFKQLRKVENAMGLSRK 327
>sp|P00953|SYW_GEOSE Tryptophan--tRNA ligase OS=Geobacillus stearothermophilus GN=trpS
PE=1 SV=1
Length = 328
Score = 276 bits (707), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 154/341 (45%), Positives = 202/341 (59%), Gaps = 29/341 (8%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRET 124
K I SG+QP+G I +GNY+GA++ ++ LQ IT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 125 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 184
AA YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS AG E V
Sbjct: 62 AAKYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS--AGKEAVS 119
Query: 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 244
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N YG
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYG------------E 167
Query: 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 364
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 365 EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
M +S LD+VL +GA KA +A + + QAMG RR
Sbjct: 288 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGRR 327
>sp|P67587|SYW_BRUSU Tryptophan--tRNA ligase OS=Brucella suis biovar 1 (strain 1330)
GN=trpS PE=3 SV=1
Length = 355
Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/355 (43%), Positives = 211/355 (59%), Gaps = 27/355 (7%)
Query: 75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKA 120
S+ K + SGVQPTG++HLGNYLGAIK W+ +Q +T+ D +L ++
Sbjct: 2 STFKPLVFSGVQPTGNLHLGNYLGAIKRWVEVQKTEECIYCVVDMHALTVSPDPVELMQS 61
Query: 121 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 180
TRE A +LA GID K+ VF QS V H EL W+ + IGW+++M QFK+K+ K
Sbjct: 62 TREVTAAFLAAGIDPKKSIVFNQSRVMQHAELAWVFNCVARIGWMSRMTQFKDKAGK-DR 120
Query: 181 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK---- 236
EN + L YP LMA+DILLY++ VPVGEDQKQHLELTR++A++ N Y R
Sbjct: 121 ENASLGLFAYPSLMAADILLYRATAVPVGEDQKQHLELTRDIAQKFNNDYSDRIASLGVG 180
Query: 237 ---KLGGRG-GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 292
K+G F + EP+I R+MSL DG KMSKS PSD SRINL+D +D I
Sbjct: 181 VDMKVGDEQVSGFFPLTEPMISGPAMRIMSLRDGTKKMSKSDPSDLSRINLIDDEDTITK 240
Query: 293 KIKRCKTDSSAGL--EFDNLE-RPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLL 349
KI++ KTDS GL E D LE RPE +NL+ IY +S TK +V +E + K L
Sbjct: 241 KIRKAKTDSD-GLPSEVDGLEGRPEADNLVGIYAALSSTTKEDVLKEFGGRQFSDLKASL 299
Query: 350 TDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 404
D + L PI +++D A++D VL DG +A IA+ T+ +V +G+L+
Sbjct: 300 ADLAVARLSPITHEMRRLVADPAHIDSVLRDGGEQAGAIAEQTMRHVRDIVGWLQ 354
>sp|P67586|SYW_BRUME Tryptophan--tRNA ligase OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=trpS PE=3 SV=1
Length = 355
Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/355 (43%), Positives = 211/355 (59%), Gaps = 27/355 (7%)
Query: 75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKA 120
S+ K + SGVQPTG++HLGNYLGAIK W+ +Q +T+ D +L ++
Sbjct: 2 STFKPLVFSGVQPTGNLHLGNYLGAIKRWVEVQKTEECIYCVVDMHALTVSPDPVELMQS 61
Query: 121 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 180
TRE A +LA GID K+ VF QS V H EL W+ + IGW+++M QFK+K+ K
Sbjct: 62 TREVTAAFLAAGIDPKKSIVFNQSRVMQHAELAWVFNCVARIGWMSRMTQFKDKAGK-DR 120
Query: 181 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK---- 236
EN + L YP LMA+DILLY++ VPVGEDQKQHLELTR++A++ N Y R
Sbjct: 121 ENASLGLFAYPSLMAADILLYRATAVPVGEDQKQHLELTRDIAQKFNNDYSDRIASLGVG 180
Query: 237 ---KLGGRG-GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 292
K+G F + EP+I R+MSL DG KMSKS PSD SRINL+D +D I
Sbjct: 181 VDMKVGDEQVSGFFPLTEPMISGPAMRIMSLRDGTKKMSKSDPSDLSRINLIDDEDTITK 240
Query: 293 KIKRCKTDSSAGL--EFDNLE-RPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLL 349
KI++ KTDS GL E D LE RPE +NL+ IY +S TK +V +E + K L
Sbjct: 241 KIRKAKTDSD-GLPSEVDGLEGRPEADNLVGIYAALSSTTKEDVLKEFGGRQFSDLKASL 299
Query: 350 TDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 404
D + L PI +++D A++D VL DG +A IA+ T+ +V +G+L+
Sbjct: 300 ADLAVARLSPITHEMRRLVADPAHIDSVLRDGGEQAGAIAEQTMRHVRDIVGWLQ 354
>sp|P0A2P2|SYW_SALTY Tryptophan--tRNA ligase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=trpS PE=3 SV=1
Length = 334
Score = 275 bits (704), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 153/342 (44%), Positives = 212/342 (61%), Gaps = 31/342 (9%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRETAA 126
+ SG QP+G + +GNY+GA++ W+ +Q IT+ D QQL KAT +T A
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQQLRKATLDTLA 65
Query: 127 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 186
+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 66 LYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY-AENINAG 124
Query: 187 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 246
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LYG IF
Sbjct: 125 LFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNGLYGD------------IF 172
Query: 247 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRCKTDSSAG- 304
KVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR TDS
Sbjct: 173 KVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRAVTDSDEPP 231
Query: 305 -LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVR 363
+ +D E+ +NLL I ++G++ E+ ++ + +G K + +A+ L +Q R
Sbjct: 232 VVRYDVKEKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVAEAVSGMLSELQER 291
Query: 364 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
Y +D A+L KV+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 292 YHRFRNDEAFLQKVMKDGAEKASARAAETLKAVYEAIGFVAK 333
>sp|P0A2P3|SYW_SALTI Tryptophan--tRNA ligase OS=Salmonella typhi GN=trpS PE=3 SV=1
Length = 334
Score = 275 bits (704), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 153/342 (44%), Positives = 212/342 (61%), Gaps = 31/342 (9%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRETAA 126
+ SG QP+G + +GNY+GA++ W+ +Q IT+ D QQL KAT +T A
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQQLRKATLDTLA 65
Query: 127 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 186
+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 66 LYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY-AENINAG 124
Query: 187 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 246
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LYG IF
Sbjct: 125 LFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNGLYGD------------IF 172
Query: 247 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRCKTDSSAG- 304
KVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR TDS
Sbjct: 173 KVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRAVTDSDEPP 231
Query: 305 -LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVR 363
+ +D E+ +NLL I ++G++ E+ ++ + +G K + +A+ L +Q R
Sbjct: 232 VVRYDVKEKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVAEAVSGMLSELQER 291
Query: 364 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
Y +D A+L KV+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 292 YHRFRNDEAFLQKVMKDGAEKASARAAETLKAVYEAIGFVAK 333
>sp|P56396|SYW_HELPY Tryptophan--tRNA ligase OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=trpS PE=3 SV=2
Length = 326
Score = 275 bits (703), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 156/340 (45%), Positives = 198/340 (58%), Gaps = 30/340 (8%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRE 123
KKR+ SG+QPTG IHLGNYLGAIK+W+ +Q ITLP D L + E
Sbjct: 3 KKRVFSGIQPTGQIHLGNYLGAIKHWVEMQDEYENLFCVVNSHAITLPIDPAFLKSQSYE 62
Query: 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 183
+ LACGID ++ +F+QS V H L WLL+ +G + +M QFK+KS K ++V
Sbjct: 63 LVKLLLACGIDPKQSGLFIQSEVDEHPALAWLLNCQVSMGEMQRMTQFKDKSLK-NPKSV 121
Query: 184 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 243
V L YP+LMASDILLYQSD VPVGEDQKQHLELTR +AE+ N +G
Sbjct: 122 NVGLFNYPILMASDILLYQSDLVPVGEDQKQHLELTRNIAEKFNRDFGN----------- 170
Query: 244 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 303
FKVPEPLI GARVM L D KMSKS I LLD D+I KIK+ TDS
Sbjct: 171 -CFKVPEPLIAKVGARVMGLDDPKVKMSKSHQGANHAIFLLDEPDIIVKKIKKAATDSMG 229
Query: 304 GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVR 363
+ FD +R NLL+IY L+S ++ + E +N +G FK L + +I+ L PIQ R
Sbjct: 230 VIAFDE-KREGIFNLLNIYMLLSNESPENIEERFKNKGYGDFKKELAEVMIQALKPIQER 288
Query: 364 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
Y+EI D + +L GA KA +A AT + MG +
Sbjct: 289 YKEISDDE--VKAILNGGAEKARPLARATYQKAKELMGLI 326
>sp|Q9EYY6|SYW_ENTAE Tryptophan--tRNA ligase OS=Enterobacter aerogenes GN=trpS PE=3 SV=1
Length = 334
Score = 274 bits (700), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 153/342 (44%), Positives = 212/342 (61%), Gaps = 31/342 (9%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRETAA 126
+ SG QP+G + +GNY+GA++ W+ +Q IT+ D QQL KAT +T A
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDPQQLRKATLDTLA 65
Query: 127 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 186
+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 66 LYLACGIDPQKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY-AENINAG 124
Query: 187 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 246
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N +YG IF
Sbjct: 125 LFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIAQRFNAIYGD------------IF 172
Query: 247 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRCKTDSSAG- 304
KVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR TDS
Sbjct: 173 KVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRAVTDSDEPP 231
Query: 305 -LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVR 363
+ +D E+ +NLL I ++GKT E+ + + +G K + +A+ L +Q R
Sbjct: 232 VVRYDLKEKAGVSNLLDILSAVTGKTIPELEQHFEGKMYGHLKGEVAEAVSGMLIDLQER 291
Query: 364 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
Y +D A+L++V+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 292 YHRFRNDEAFLNQVMKDGAEKASARASQTLKAVYEAIGFVAK 333
>sp|P67588|SYW_ECOL6 Tryptophan--tRNA ligase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=trpS PE=3 SV=1
Length = 334
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/342 (44%), Positives = 211/342 (61%), Gaps = 31/342 (9%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRETAA 126
+ SG QP+G + +GNY+GA++ W+ +Q IT+ D Q+L KAT +T A
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQKLRKATLDTLA 65
Query: 127 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 186
+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 66 LYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARYA-ENINAG 124
Query: 187 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 246
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LYG IF
Sbjct: 125 LFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALYGD------------IF 172
Query: 247 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRCKTDSSAG- 304
KVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR TDS
Sbjct: 173 KVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRAVTDSDEPP 231
Query: 305 -LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVR 363
+ +D + +NLL I ++G++ E+ ++ + +G K + DA+ L +Q R
Sbjct: 232 VVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSGMLTELQER 291
Query: 364 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
Y +D A+L +V+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 292 YHRFRNDEAFLQQVMKDGAEKASAHASRTLKAVYEAIGFVAK 333
>sp|P67589|SYW_ECO57 Tryptophan--tRNA ligase OS=Escherichia coli O157:H7 GN=trpS PE=3
SV=1
Length = 334
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/342 (44%), Positives = 211/342 (61%), Gaps = 31/342 (9%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRETAA 126
+ SG QP+G + +GNY+GA++ W+ +Q IT+ D Q+L KAT +T A
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQKLRKATLDTLA 65
Query: 127 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 186
+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 66 LYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARYA-ENINAG 124
Query: 187 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 246
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LYG IF
Sbjct: 125 LFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALYGD------------IF 172
Query: 247 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRCKTDSSAG- 304
KVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR TDS
Sbjct: 173 KVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRAVTDSDEPP 231
Query: 305 -LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVR 363
+ +D + +NLL I ++G++ E+ ++ + +G K + DA+ L +Q R
Sbjct: 232 VVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSGMLTELQER 291
Query: 364 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
Y +D A+L +V+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 292 YHRFRNDEAFLQQVMKDGAEKASAHASRTLKAVYEAIGFVAK 333
>sp|P00954|SYW_ECOLI Tryptophan--tRNA ligase OS=Escherichia coli (strain K12) GN=trpS
PE=1 SV=3
Length = 334
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/342 (44%), Positives = 211/342 (61%), Gaps = 31/342 (9%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRETAA 126
+ SG QP+G + +GNY+GA++ W+ +Q IT+ D Q+L KAT +T A
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQKLRKATLDTLA 65
Query: 127 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 186
+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 66 LYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARYA-ENINAG 124
Query: 187 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 246
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LY G IF
Sbjct: 125 LFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALY------------GEIF 172
Query: 247 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRCKTDSSAG- 304
KVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR TDS
Sbjct: 173 KVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRAVTDSDEPP 231
Query: 305 -LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVR 363
+ +D + +NLL I ++G++ E+ ++ + +G K + DA+ L +Q R
Sbjct: 232 VVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSGMLTELQER 291
Query: 364 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
Y +D A+L +V+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 292 YHRFRNDEAFLQQVMKDGAEKASAHASRTLKAVYEAIGFVAK 333
>sp|Q891C7|SYW_CLOTE Tryptophan--tRNA ligase OS=Clostridium tetani (strain Massachusetts
/ E88) GN=trpS PE=3 SV=1
Length = 338
Score = 272 bits (696), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 144/340 (42%), Positives = 206/340 (60%), Gaps = 28/340 (8%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRE 123
KK I SG+QP+G++ +GNY GA+KNW+ LQ IT+ Q+L K T E
Sbjct: 10 KKTIFSGIQPSGNLTIGNYFGALKNWVKLQDEYNCFYCIVDLHAITVRQVPQELRKRTLE 69
Query: 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 183
A+Y+A G+D K ++F+QSHV AH E WLL+ T +G LN+M QFK+KS AG E++
Sbjct: 70 VLAVYIASGLDPEKNTLFIQSHVPAHTEAAWLLNCFTYLGELNRMTQFKDKSQNAG-ESI 128
Query: 184 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 243
LL YPVLMA+DILLY +D VPVG DQKQHLELTR++A R N LY
Sbjct: 129 SAGLLNYPVLMAADILLYNADLVPVGNDQKQHLELTRDIATRFNNLY------------S 176
Query: 244 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 303
FKVPEP I GAR+M L + KMSKSA + I ++DP ++I NKI R TD+
Sbjct: 177 PTFKVPEPYIGKTGARIMDLQEPKKKMSKSAENKNGYILIMDPPNIIQNKINRAVTDNEG 236
Query: 304 GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVR 363
+ + + E+P NL++I +GK + +E + + FK + +A+I + P+Q
Sbjct: 237 IVRYSD-EQPGVKNLMNILSTATGKNVESIEKEYAGLGYSKFKKDVAEAIIAEVEPLQKE 295
Query: 364 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
+ + D +YL+KV +GA KA+ +A+ TL+ + + +GF+
Sbjct: 296 VKRYLEDKSYLEKVYKEGAQKASYVANKTLSKMKRKIGFV 335
>sp|Q83JA5|SYW_SHIFL Tryptophan--tRNA ligase OS=Shigella flexneri GN=trpS PE=3 SV=1
Length = 334
Score = 272 bits (695), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 151/342 (44%), Positives = 211/342 (61%), Gaps = 31/342 (9%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRETAA 126
+ SG QP+G + +GNY+GA++ W+ +Q IT+ D Q+L KAT +T A
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQKLRKATLDTLA 65
Query: 127 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 186
+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 66 LYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARYA-ENINAG 124
Query: 187 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 246
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LY G IF
Sbjct: 125 LFGYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALY------------GEIF 172
Query: 247 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRCKTDSSAG- 304
KVPEP IP +GARVMSL + KMSKS + + I LL DPK V+ KIKR TDS
Sbjct: 173 KVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVV-KKIKRAVTDSDEPP 231
Query: 305 -LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVR 363
+ +D + +NLL I ++G++ E+ ++ + +G K + DA+ L +Q R
Sbjct: 232 VVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGEVADAVSGMLTELQER 291
Query: 364 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
Y +D A+L +V+ DGA KA+ A TL VY+A+GF+ +
Sbjct: 292 YHRFRNDEAFLQQVMKDGAEKASVHASRTLKAVYEAIGFVAK 333
>sp|Q8Y577|SYW_LISMO Tryptophan--tRNA ligase OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=trpS PE=3 SV=1
Length = 331
Score = 272 bits (695), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 153/343 (44%), Positives = 204/343 (59%), Gaps = 29/343 (8%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATR 122
+KK I SG+QP+G + LGNY+GA+K + Q IT+P D +L + TR
Sbjct: 1 MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEHAITVPQDRLKLREQTR 60
Query: 123 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 182
AA+YLA G+D K+++F+QS V AH + W+L IG L +M QFK+KS AG
Sbjct: 61 SLAALYLAVGLDPEKSTLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKS--AGKAG 118
Query: 183 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 242
V LLTYP LMA+DILLYQ+D VPVGEDQKQH+ELTR+LAER N +
Sbjct: 119 VSAGLLTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAERFN------------KKH 166
Query: 243 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 302
IF +PE IP GARVMSL D KMSKS + ++ I LLDP I KIK TDSS
Sbjct: 167 ADIFTMPEVFIPKQGARVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKIKSAVTDSS 226
Query: 303 AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQV 362
+E++ E+P +NLL+IY +I+G+T + E+ +G FK L + ++ L PIQ
Sbjct: 227 GIIEYNKEEKPGVSNLLTIYSVITGETIASIEEKYVGKGYGDFKTDLAELVVSELEPIQE 286
Query: 363 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
RY + S LD +L GA KAA +A+ TL + +G R+
Sbjct: 287 RYYAYLK-SEELDTILDAGAEKAARVANKTLKKMENGVGLGRK 328
>sp|Q98C31|SYW_RHILO Tryptophan--tRNA ligase OS=Rhizobium loti (strain MAFF303099)
GN=trpS PE=3 SV=1
Length = 355
Score = 271 bits (694), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 156/354 (44%), Positives = 204/354 (57%), Gaps = 25/354 (7%)
Query: 75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKA 120
S+ K + SGVQPTG++HLGNYLGAIK ++ALQ +T + L+
Sbjct: 2 SAFKPLVFSGVQPTGNLHLGNYLGAIKKFVALQETSDCIYCVVDLHSLTAQLVHEDLADQ 61
Query: 121 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 180
TR A +LA GID K VF QS V H EL W+ + IGW+NKM QFK+K+ K
Sbjct: 62 TRSITAAFLASGIDPKKHIVFNQSRVMQHAELAWIFNCVARIGWMNKMTQFKDKAGK-DR 120
Query: 181 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK---- 236
EN + LL YP LMA+DILLY++ VPVGEDQKQHLELTR++A++ N + R +
Sbjct: 121 ENASLGLLAYPSLMAADILLYRATHVPVGEDQKQHLELTRDIAQKFNNDFSDRIARLGVG 180
Query: 237 ---KLGGRG-GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 292
++G F + EP+I AR+MSL DG KMSKS PSD SRINL D D I+
Sbjct: 181 VEMQVGEETVNGFFPITEPVIGGPAARIMSLRDGSKKMSKSDPSDLSRINLTDDADTISK 240
Query: 293 KIKRCKTDSSA-GLEFDNLE-RPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLT 350
KI++ KTD A E LE RPE NL+ IY ++ +K +V +E + FKP L
Sbjct: 241 KIRKAKTDPEALPSEVSGLESRPEAENLVGIYAGLAEMSKADVLKEFGGQQFSVFKPALA 300
Query: 351 DALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 404
D +E L PI I D AY+D VL DG +A +A+ T+ V +G L+
Sbjct: 301 DLAVEKLAPIAGEMRRIEGDRAYVDAVLRDGGERAGVLAETTMKTVRDIIGLLQ 354
>sp|Q9ZJX4|SYW_HELPJ Tryptophan--tRNA ligase OS=Helicobacter pylori (strain J99) GN=trpS
PE=3 SV=1
Length = 326
Score = 271 bits (694), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 158/340 (46%), Positives = 196/340 (57%), Gaps = 30/340 (8%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRE 123
KKR+ SG+QPTG IHLGNYLGAIK+W+ LQ ITLP + L T E
Sbjct: 3 KKRVFSGIQPTGQIHLGNYLGAIKHWVELQDEYENLFCIVNSHAITLPIEPIFLKSQTYE 62
Query: 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 183
+ LACGI ++ +F+QS V H L WLL +G + +M QFK+KS K ++V
Sbjct: 63 LVKLLLACGISPKQSGLFIQSEVDEHPALAWLLDCQVSMGEMQRMTQFKDKSLK-NPKSV 121
Query: 184 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 243
V L YP+LMASDILLYQSD VPVGEDQKQHLELTR +AE+ N +G
Sbjct: 122 NVGLFNYPILMASDILLYQSDLVPVGEDQKQHLELTRNVAEKFNRDFGN----------- 170
Query: 244 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 303
FKVPEPLI GARVM L D KMSKS I LLD DVI KIK+ TDS
Sbjct: 171 -CFKVPEPLIAKVGARVMGLDDPKVKMSKSHKGANHAIFLLDEPDVIVKKIKKAATDSMG 229
Query: 304 GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVR 363
+ FD R NLL+IY L+S ++ ++ E +N +G FK L + +I+ L PIQ R
Sbjct: 230 VIAFDE-TREGVFNLLNIYMLLSDESPEKIEERFRNKGYGDFKKELAEVVIQSLKPIQER 288
Query: 364 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
Y+EI D + VL GA KA +A AT + MG +
Sbjct: 289 YQEISDDE--VKAVLNCGAEKARPLARATYQKAKELMGLI 326
>sp|Q1RIE3|SYW_RICBR Tryptophan--tRNA ligase OS=Rickettsia bellii (strain RML369-C)
GN=trpS PE=3 SV=1
Length = 328
Score = 271 bits (694), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 155/341 (45%), Positives = 214/341 (62%), Gaps = 28/341 (8%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATR 122
+KK ++SGVQ TGS+HLGNYLG+I+NW+ +Q IT+ +L ++
Sbjct: 1 MKKTVLSGVQATGSLHLGNYLGSIRNWVKMQEEYNCFFFLADLHSITVDIAPSELKRSVI 60
Query: 123 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 182
ET AIYLA G+D +K ++F QS V+ H EL WLL+ TP+GWL +M QFK+K+ K E
Sbjct: 61 ETLAIYLAAGLDPNKVTIFAQSMVKEHAELAWLLNCVTPLGWLKRMTQFKDKAGK-DQEK 119
Query: 183 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 242
+ L +YPVLMA+DIL+Y++D VPVGEDQKQHLELTR++A +N RK+ K
Sbjct: 120 ACLGLFSYPVLMAADILIYKADIVPVGEDQKQHLELTRDIAGVIN-----RKFNK----- 169
Query: 243 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 302
I KVPE LI +G R+MSL DG KMSKS SD SRINL D D+I KIK+ KTD
Sbjct: 170 -EILKVPEVLIGGSGTRIMSLRDGSKKMSKSDSSDFSRINLRDDNDLIHQKIKKAKTDHL 228
Query: 303 AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQV 362
+ + +D RPE +NLL IY +S + + + + + FK L + +I +L P++
Sbjct: 229 SFVSYDKEARPEISNLLDIYTTLSEEKLENIIQNYE--GFAKFKEDLAEIIITNLQPMRD 286
Query: 363 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
+Y E+M+D YL K+L GA KA A T+N + + GF+
Sbjct: 287 KYLELMNDQEYLLKILHQGAEKARVRASETVNELKEQFGFV 327
>sp|P21656|SYW_BACSU Tryptophan--tRNA ligase OS=Bacillus subtilis (strain 168) GN=trpS
PE=1 SV=2
Length = 330
Score = 271 bits (693), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 151/343 (44%), Positives = 204/343 (59%), Gaps = 29/343 (8%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATR 122
+K+ I SG+QP+GS+ LGNY+GA+K ++ LQ IT+P D +L K R
Sbjct: 1 MKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIR 60
Query: 123 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 182
AA+YLA G+D KA++F+QS V AH + W++ IG L +M QFK+KS G E
Sbjct: 61 NLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKSK--GNEA 118
Query: 183 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 242
V LLTYP LMA+DILLY +D VPVGEDQKQHLELTR LAER N Y
Sbjct: 119 VVSGLLTYPPLMAADILLYGTDLVPVGEDQKQHLELTRNLAERFNKKYND---------- 168
Query: 243 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 302
IF +PE IP GAR+MSL D L KMSKS P+ ++ I LLD + KIK TDS
Sbjct: 169 --IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDSE 226
Query: 303 AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQV 362
++FD +P +NLL+IY ++ T E+ + + +G FK L + ++ L PIQ
Sbjct: 227 GIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKPIQD 286
Query: 363 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
RY E++ +S LD++L +GA +A A+ L + AMG R+
Sbjct: 287 RYYELI-ESEELDRILDEGAERANRTANKMLKKMENAMGLGRK 328
>sp|Q71XG7|SYW_LISMF Tryptophan--tRNA ligase OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=trpS PE=3 SV=1
Length = 331
Score = 271 bits (693), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 153/343 (44%), Positives = 203/343 (59%), Gaps = 29/343 (8%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATR 122
+KK I SG+QP+G + LGNY+GA+K + Q IT+P D +L + TR
Sbjct: 1 MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEHAITVPQDRLKLREQTR 60
Query: 123 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 182
AA+YLA G+D KA++F+QS V AH + W+L IG L +M QFK+KS G
Sbjct: 61 SLAALYLAVGLDPEKATLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKSDGKAG-- 118
Query: 183 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 242
V LLTYP LMA+DILLYQ+D VPVGEDQKQH+ELTR+LAER N +
Sbjct: 119 VSAGLLTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAERFN------------KKH 166
Query: 243 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 302
IF +PE IP GARVMSL D KMSKS + ++ I LLDP I KIK TDSS
Sbjct: 167 ADIFTMPEVFIPKQGARVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKIKSAVTDSS 226
Query: 303 AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQV 362
+E++ E+P +NLL+IY +I+G+T + E+ +G FK L + ++ L PIQ
Sbjct: 227 GIIEYNKEEKPGVSNLLTIYSVITGETISTIEEKYVGKGYGDFKTDLAELVVAELEPIQE 286
Query: 363 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
RY + S LD +L GA KAA +A+ TL + +G R+
Sbjct: 287 RYYAYLK-SEELDTILDAGAEKAARVANKTLKKMENGVGLGRK 328
>sp|Q6AGQ7|SYW_LEIXX Tryptophan--tRNA ligase OS=Leifsonia xyli subsp. xyli (strain
CTCB07) GN=trpS PE=3 SV=1
Length = 337
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 147/340 (43%), Positives = 205/340 (60%), Gaps = 27/340 (7%)
Query: 80 RIVSGVQPTG-SIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRET 124
R+ SG+QP+ S+HLGNY+GA+ W LQ IT+ D L + TR T
Sbjct: 6 RLYSGMQPSADSLHLGNYVGALLQWKELQAAHDAFFSVVDLHAITVAQDPHDLREKTRRT 65
Query: 125 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 184
AA Y+A GID S ++++VQSHV AH +L W+LS+ T G +M QFK+KS K G E
Sbjct: 66 AAQYIAAGIDPSVSTLYVQSHVPAHAQLAWVLSTITGYGEAARMTQFKDKSAKQGAEATS 125
Query: 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 244
V L TYPVLMA+DILL+ +D VPVG+DQ+QH+ELTR+LAER N R G
Sbjct: 126 VGLFTYPVLMAADILLFDADVVPVGDDQRQHVELTRDLAERFN------------SRFGE 173
Query: 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304
F VP+ +I GAR+ L SKMSKSA S + LLD D+ KI R TD+
Sbjct: 174 TFVVPQAMILKDGARIYDLQSPESKMSKSADSGAGIVWLLDEPDIARKKIMRAVTDTDGV 233
Query: 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 364
+ +D +P +NLLSIY +SG+ ++ + + +G FK L + +++ L PI+ R
Sbjct: 234 VSYDRAGKPGVSNLLSIYSALSGRAIQQIELDYEGKGYGDFKKGLVEVVVDALGPIRERT 293
Query: 365 EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 404
E+++D A LD++LA AA+A + A+ TL Y+A+GFL+
Sbjct: 294 LELLADPAELDRILAGNAARAGEAAEITLAKAYEAIGFLQ 333
>sp|P57956|SYW_PASMU Tryptophan--tRNA ligase OS=Pasteurella multocida (strain Pm70)
GN=trpS PE=3 SV=1
Length = 333
Score = 269 bits (688), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 147/342 (42%), Positives = 207/342 (60%), Gaps = 29/342 (8%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRE 123
K ++SGVQP+G + +GNYLGA++ W+ +Q IT+ D + L KAT +
Sbjct: 3 KPVVLSGVQPSGELTIGNYLGALRQWVKMQDDYECLFCIVDLHAITVRQDPESLRKATLD 62
Query: 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 183
A+YLACGID K+++F+QSHV H +L W+L+ T G + +M QFK+KS + EN+
Sbjct: 63 VLALYLACGIDPEKSTIFIQSHVPEHTQLAWVLNCYTYFGEMGRMTQFKDKSARHA-ENI 121
Query: 184 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 243
V L TYPVLMA+DILLYQ++ VPVGEDQKQHLE+TR++A R N LYG
Sbjct: 122 NVGLFTYPVLMAADILLYQANQVPVGEDQKQHLEITRDIANRFNALYGD----------- 170
Query: 244 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 303
+F VPEP IP AGARVMSL + KMSKS + + I LL+ +A KIKR TDS
Sbjct: 171 -LFAVPEPFIPKAGARVMSLLEPEKKMSKSDENRNNVIGLLEDPKAVAKKIKRAVTDSDE 229
Query: 304 G--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQ 361
+ +D + +NLL I ++GK+ E+ E + +G K + D + L +Q
Sbjct: 230 PPVVRYDVQNKAGVSNLLDILSGVTGKSIAELETEFEGKMYGHLKGTVADEVSAMLTTLQ 289
Query: 362 VRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
R+ ++ A L+ + +GA KA + A ATL+ VYQA+GF+
Sbjct: 290 ERFHHFRNNEALLNDIAREGAQKARERAKATLDAVYQAVGFV 331
>sp|Q97LD6|SYW_CLOAB Tryptophan--tRNA ligase OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=trpS PE=3 SV=2
Length = 335
Score = 268 bits (684), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 208/340 (61%), Gaps = 27/340 (7%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRE 123
KK I SG+QP+G + +GNY GAIKNW+ LQ IT+ + + L + T +
Sbjct: 5 KKVIFSGIQPSGELTIGNYFGAIKNWVKLQDEYDCYYCIVDLHAITVKQEAKDLRRRTLQ 64
Query: 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 183
A Y+A GID K ++F+QSHV AHV+ W+L+ + +G L++M QFK+KS K +
Sbjct: 65 LIATYIASGIDPEKNTIFIQSHVPAHVQAQWILNCMSYVGELSRMTQFKDKSKKYEDTGI 124
Query: 184 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 243
G LL YPVLMA+DIL+YQ+D VPVG+DQ QH+ELTR+LA+R N Y
Sbjct: 125 GAGLLNYPVLMAADILIYQADLVPVGKDQTQHIELTRDLAQRFNSTY------------S 172
Query: 244 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 303
FK+PE IP GA++MSL + L KMSKS+ + S I ++DP +VI KI R TD+
Sbjct: 173 ETFKIPEGYIPTGGAKIMSLQEPLKKMSKSSDNPNSFILIMDPPEVIKRKIARAVTDNVG 232
Query: 304 GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVR 363
+++ + ++P NL++I +G + ++ ++ + + FK + DALI+ L PIQ +
Sbjct: 233 VVKYTD-DQPGVKNLMNIMSCCTGMSVKDIEDKYEGQGYSKFKEDVADALIQELEPIQNK 291
Query: 364 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
E++ D AYL + GA KA+ IA+ T++ + + +GF+
Sbjct: 292 VNELLKDKAYLQDICKKGAQKASYIANKTVSKMMRKVGFI 331
>sp|Q89W91|SYW_BRAJA Tryptophan--tRNA ligase OS=Bradyrhizobium japonicum (strain USDA
110) GN=trpS PE=3 SV=1
Length = 350
Score = 267 bits (683), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 148/351 (42%), Positives = 204/351 (58%), Gaps = 30/351 (8%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDT----QQLSKA 120
+R+ SGVQPTG++HLGNYLGAI N++ +Q IT D +L++
Sbjct: 5 ERVFSGVQPTGNLHLGNYLGAIVNFVKMQETHNCIYCVVDMHAITQGVDVWGGPVELARN 64
Query: 121 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 180
TRE A ++A GID K VF QS V H EL W+ + +GWL +M QFKEK+ K
Sbjct: 65 TREVTAAFIASGIDPKKHIVFNQSQVSGHAELAWIFNCVARMGWLGRMTQFKEKAGK-DR 123
Query: 181 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 240
EN V L YPVLMA+DILLY++ VPVGEDQKQHLEL+R++A++ N +G + G
Sbjct: 124 ENASVGLFDYPVLMAADILLYRATHVPVGEDQKQHLELSRDIAQKFNNDFGD-SIRAQGT 182
Query: 241 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 300
G F +PEP I RVMSL DG KMSKS SD SRINL D D IA KI++ KTD
Sbjct: 183 NDGLFFPLPEPFITGPATRVMSLRDGTKKMSKSDASDNSRINLTDDADTIAQKIRKAKTD 242
Query: 301 ------SSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALI 354
GLE RPE +NL+ I+ ++ ++K +V + + +FK L + +
Sbjct: 243 PEPLPTEEKGLE----ARPEADNLVGIFAALADRSKADVLRDFGGGQFSSFKNALAELCV 298
Query: 355 EHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
L PI + +++D ++D +L +G+ +A IAD T+ +GF+RR
Sbjct: 299 TKLAPIAGEMKRLVADPGHIDAILNEGSDRARAIADETMKLSKDIVGFIRR 349
>sp|Q929H5|SYW_LISIN Tryptophan--tRNA ligase OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=trpS PE=3 SV=1
Length = 331
Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 151/343 (44%), Positives = 203/343 (59%), Gaps = 29/343 (8%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATR 122
+KK I SG+QP+G + LGNY+GA+K + Q IT+P D +L + TR
Sbjct: 1 MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEHAITVPQDRLKLREQTR 60
Query: 123 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 182
AA+YLA G+D KA++F+QS V AH + W+L IG L +M QFK+KS G
Sbjct: 61 SLAALYLAVGLDPEKATLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKSDGKAG-- 118
Query: 183 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 242
V LLTYP LMA+DILLYQ++ VPVGEDQKQH+ELTR+LAER N +
Sbjct: 119 VSAGLLTYPPLMAADILLYQTNLVPVGEDQKQHIELTRDLAERFN------------KKH 166
Query: 243 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 302
IF +PE IP GARVMSL D KMSKS + ++ I LLDP I KIK TDSS
Sbjct: 167 ADIFTMPEVFIPKQGARVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKIKSAVTDSS 226
Query: 303 AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQV 362
+E++ E+P +NLL+IY +I+G+T + E+ +G FK L + ++ L IQ
Sbjct: 227 GIIEYNKEEKPGVSNLLTIYSVITGETIANIEEKYVGKGYGDFKTDLAELVVAELEQIQE 286
Query: 363 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
RY + +S LD +L GA KAA +A+ TL + +G R+
Sbjct: 287 RYYAYL-ESEELDNILDAGAEKAARVANKTLKKMENGVGLGRK 328
>sp|Q830U2|SYW_ENTFA Tryptophan--tRNA ligase OS=Enterococcus faecalis (strain ATCC
700802 / V583) GN=trpS PE=3 SV=1
Length = 336
Score = 266 bits (680), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 143/341 (41%), Positives = 204/341 (59%), Gaps = 23/341 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRET 124
K I SG+QP+G+ +GNY+GA+K +I LQ IT+P + Q+L + R
Sbjct: 2 KTIFSGIQPSGTPTIGNYIGAMKQFIELQNEYNCYFCIVDEHAITVPQEPQKLRQQIRSL 61
Query: 125 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 184
AA+YLA G+D KA++F+QS V AH E W++ T IG L +M QFK+KS K G V
Sbjct: 62 AALYLAVGLDPQKATIFIQSEVSAHAEAGWIIQCNTSIGELERMTQFKDKSQKNGRAGVS 121
Query: 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 244
LLTYP LM DI+LY +D VPVG+DQKQHLELTR+ ER N Y + +
Sbjct: 122 AGLLTYPPLMVGDIVLYNADLVPVGDDQKQHLELTRDFVERFNKRYAQKNQE-------- 173
Query: 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304
I +PE I G+R+MSL + KMSKS + + I++LD VI KI+ TDS+
Sbjct: 174 ILTIPEVKIAEQGSRIMSLQEPTKKMSKSDTNVKGFISMLDEPAVIRKKIRSAVTDSTGV 233
Query: 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 364
+E++ E+P NLL+IY +G+T E+ + + +G FK L +A++ L PIQVRY
Sbjct: 234 IEYNKEEKPGITNLLNIYSAATGQTVEELVQAYEGKGYGDFKADLAEAVVALLEPIQVRY 293
Query: 365 EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
+E+++ S LD +L +GA A +A+ TL + A+G R+
Sbjct: 294 QELLA-SEELDMILDEGAENARLVANKTLQRMKNAVGLGRK 333
>sp|Q7NA61|SYW_PHOLL Tryptophan--tRNA ligase OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=trpS PE=3 SV=1
Length = 345
Score = 266 bits (679), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 150/357 (42%), Positives = 217/357 (60%), Gaps = 32/357 (8%)
Query: 64 LSEPTAPVASSSSVKKRIV-SGVQPTGSIHLGNYLGAIKNWIALQ--------------I 108
++EPT V+ + + +K IV SG QP+G + +GNY+GA++ W+ +Q I
Sbjct: 1 MNEPT--VSETLNSQKPIVFSGAQPSGELTIGNYMGALRQWVKMQDDYDCIYCIVDQHAI 58
Query: 109 TLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKM 168
T+ D ++L K T +T A+YLACGID K+++FVQSHV H +L W+L+ T G L++M
Sbjct: 59 TVRQDPKELRKRTLDTLALYLACGIDPEKSTIFVQSHVPQHAQLSWILNCYTYFGELSRM 118
Query: 169 IQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 228
QFK+KS + EN+ L YPVLM +DIL+YQ++ VPVG DQKQHLEL+R++A+R N
Sbjct: 119 TQFKDKSAR-HAENINAGLFDYPVLMTADILVYQTNQVPVGIDQKQHLELSRDIAQRFNA 177
Query: 229 LYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 288
+YG IF VPEP IP GARVM+L D KMSKS + + I LL+
Sbjct: 178 IYGN------------IFAVPEPFIPTGGARVMALQDPEKKMSKSDDNRNNVIALLEDPK 225
Query: 289 VIANKIKRCKTDSSAG--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFK 346
A KIKR TDS + +D ++P +NLL + ++GKT E+ E + +G K
Sbjct: 226 SAAKKIKRAVTDSEEPPRVRYDLEQKPGVSNLLDLLAGVTGKTIPELEAEFEGQMYGHLK 285
Query: 347 PLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
+ DA+ L +Q R+ +D L+K++A+GAAKA A TL+ VY+A+GF+
Sbjct: 286 SAVADAVSGMLTELQERFHYFRNDEILLNKIMAEGAAKAKARAQITLDKVYEAVGFI 342
>sp|Q8ZJF2|SYW_YERPE Tryptophan--tRNA ligase OS=Yersinia pestis GN=trpS PE=1 SV=2
Length = 342
Score = 264 bits (675), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 157/357 (43%), Positives = 209/357 (58%), Gaps = 37/357 (10%)
Query: 64 LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------IT 109
LS+PT S K + SG QP+G + +GNY+GA++ W+ +Q IT
Sbjct: 3 LSKPTV------SSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 56
Query: 110 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 169
D L K T +T A+YLACGID K+++FVQSHV H +L W L+ T G L++M
Sbjct: 57 ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 116
Query: 170 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 229
QFK+KS + EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N L
Sbjct: 117 QFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 175
Query: 230 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKD 288
YG IFK+PEP IP AGARVMSL D KMSKS + + I LL DPK
Sbjct: 176 YGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKS 223
Query: 289 VIANKIKRCKTDSS--AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFK 346
V+ KIKR TDS A + +D ++ +NLL I ++G++ E+ + +G K
Sbjct: 224 VV-KKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLK 282
Query: 347 PLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
+ DA+ L +Q RY D A L V+ +GAAKA A TL VY+A+GF+
Sbjct: 283 GAVADAVSGMLSELQERYRTYREDEALLQDVMREGAAKARARAQVTLAKVYEAIGFV 339
>sp|Q92SI9|SYW_RHIME Tryptophan--tRNA ligase OS=Rhizobium meliloti (strain 1021) GN=trpS
PE=3 SV=1
Length = 354
Score = 264 bits (675), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 153/356 (42%), Positives = 205/356 (57%), Gaps = 29/356 (8%)
Query: 75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKA 120
+ K + SGVQPTG++HLGNYLGAI+ ++ALQ IT + L
Sbjct: 2 NEFKPLVFSGVQPTGNLHLGNYLGAIRKFVALQENNDCIYCVVDLHSITAQLVHEDLPGQ 61
Query: 121 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 180
R AA ++A GID K VF QS V H EL W+ + IGW+N+M QFK+K+ K
Sbjct: 62 IRSIAAAFIASGIDPEKHIVFNQSAVPQHAELAWIFNCVARIGWMNRMTQFKDKAGK-DR 120
Query: 181 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 240
EN + LL YP LMA+DIL+Y++ VPVG+DQKQHLELTR++A++ N + + + GG
Sbjct: 121 ENASLGLLAYPSLMAADILVYRATHVPVGDDQKQHLELTRDIAQKFNIDF--MEHIRRGG 178
Query: 241 RG----------GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 290
G A F EPLI RVMSL DG KMSKS PSD SRINL+D D I
Sbjct: 179 YGVDIVVGEEPIHAYFPPVEPLIGGPAPRVMSLRDGTKKMSKSDPSDLSRINLMDDADTI 238
Query: 291 ANKIKRCKTDSSA-GLEFDNL-ERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPL 348
KI++ KTD A E D L +RPE NL+ IY ++ ++K EV E + TFKP
Sbjct: 239 LKKIRKAKTDPDALPSEADGLKDRPEAENLVGIYAALADRSKEEVLAEFGGQQFSTFKPA 298
Query: 349 LTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 404
L D + L PI +M D+A++D +L G +A + A+ T+ V + +GFL+
Sbjct: 299 LADLAVSVLSPITGEMRRLMGDTAHIDAILRKGGERARERAETTMREVREIIGFLQ 354
>sp|Q7VPB2|SYW_HAEDU Tryptophan--tRNA ligase OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=trpS PE=3 SV=1
Length = 342
Score = 262 bits (670), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 147/342 (42%), Positives = 207/342 (60%), Gaps = 19/342 (5%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRE 123
K + SGVQP+G + +GNYLGA++NW+ LQ IT+ D L K+T +
Sbjct: 3 KSIVFSGVQPSGELTIGNYLGALRNWVTLQDDYDCLFCIVDLHAITVRQDPIALRKSTLD 62
Query: 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 183
A+YLACGID +K+++F+QS V H +L W+L+ T G + +M QFK+KS + ENV
Sbjct: 63 VLALYLACGIDPNKSTIFIQSQVPEHSQLAWVLNCYTYFGEMGRMTQFKDKSARYE-ENV 121
Query: 184 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 243
V L TYPVLMA+DILLYQ++ VPVG+DQKQHLE+TR++A R N LYG + + G
Sbjct: 122 NVGLFTYPVLMAADILLYQANQVPVGDDQKQHLEITRDIANRFNTLYGKKDAE--GKLIE 179
Query: 244 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 303
++F VPE I A ARVMSL + KMSKS + + I LL+ +A KIKR TDS
Sbjct: 180 SVFTVPECFIAKACARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKAVAKKIKRAMTDSDE 239
Query: 304 G--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQ 361
+++D + +NLL I I+GK+ E+ E + +G K + D ++ L +Q
Sbjct: 240 PPVIKYDQKNKAGVSNLLDILAAITGKSMVELEAEFEGKMYGHLKTEVADQVMAMLTGLQ 299
Query: 362 VRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
RY+ D A L+K+ DGA KA A TL+ VY+ +GF+
Sbjct: 300 ERYQRFRQDEALLEKIYRDGAEKARMRAKKTLDEVYKLIGFV 341
>sp|Q8EK12|SYW_SHEON Tryptophan--tRNA ligase OS=Shewanella oneidensis (strain MR-1)
GN=trpS PE=3 SV=1
Length = 332
Score = 261 bits (668), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 142/342 (41%), Positives = 203/342 (59%), Gaps = 29/342 (8%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRE 123
K ++SG QP+G + +GNY+GA++ W+A+Q IT+ D Q L +A +
Sbjct: 3 KPIVLSGAQPSGELTIGNYMGALRQWVAMQDSHDCLYCVVDLHAITVRQDPQALREACLD 62
Query: 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 183
T A+YLACG+D K++VF+QS V H +L W L+ T +G L++M QFK+KS K N+
Sbjct: 63 TLALYLACGVDPKKSTVFIQSQVPQHTQLGWALNCYTQMGELSRMTQFKDKSQKHAN-NI 121
Query: 184 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 243
V L YPVLMA+DILLYQ++ +PVG+DQKQHLELTR++A R N Y G
Sbjct: 122 NVGLFGYPVLMAADILLYQANEIPVGQDQKQHLELTRDIATRFNNAY------------G 169
Query: 244 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 303
F +PEP IP GA+VMSL D L KMSKS + + I LL+ + K+K+ TDS
Sbjct: 170 ETFTIPEPFIPEHGAKVMSLQDPLKKMSKSDDNRNNVIGLLEDPKAVMKKLKKAMTDSDE 229
Query: 304 G--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQ 361
+ FD +P +NLLS+ I+G++ + E + +G K +A++ L P+Q
Sbjct: 230 PPVVRFDIENKPGVSNLLSLMSGITGQSIASLEAEFEGKMYGHLKGAAGEAVVGMLEPLQ 289
Query: 362 VRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
RY + +D AYLD+V+ GA A A+ TL VY+ +G L
Sbjct: 290 ERYRALRADRAYLDQVMRAGAENAQARAEVTLKKVYEKIGLL 331
>sp|Q8FRR3|SYW_COREF Tryptophan--tRNA ligase OS=Corynebacterium efficiens (strain DSM
44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=trpS PE=3 SV=1
Length = 346
Score = 261 bits (667), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 199/345 (57%), Gaps = 27/345 (7%)
Query: 74 SSSVKKRIVSGVQPTG-SIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLS 118
++ R++SG+QPT S HLGNYLGA+K WI LQ IT+ + ++L
Sbjct: 9 TAQTPARVLSGIQPTADSYHLGNYLGAVKQWIDLQNSYDAFYFIPDLHAITVDQNPEELR 68
Query: 119 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 178
T AA LA GID ++++FVQSH+ AH EL W+L+ T G ++M QFK+KS K
Sbjct: 69 ARTVSGAAQLLALGIDPERSTLFVQSHIPAHAELSWVLTCLTGFGEASRMTQFKDKSTKQ 128
Query: 179 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 238
G E L TYP+LMA+DILLY+ VPVGEDQ+QHLELTR LAER N
Sbjct: 129 GAERTSAGLFTYPMLMAADILLYRPQLVPVGEDQRQHLELTRTLAERFN----------- 177
Query: 239 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 298
R G +F+VPE IP +++ L + +KMSKS + + INLLD V + +IK
Sbjct: 178 -NRFGTVFEVPEGFIPEGASKIYDLQNPTAKMSKSGENPKGLINLLDDPKVSSKRIKSAV 236
Query: 299 TDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLH 358
TD+ + FD +P +NLL I ++G++ ++ + +G K DAL
Sbjct: 237 TDNDGVIAFDVANKPGVSNLLVIQSALTGESVDKLVAGYEGKGYGALKTDTADALEAFTT 296
Query: 359 PIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
P++ +Y+E MSD A L++VLA GA +A +IA L VY +GFL
Sbjct: 297 PLRAKYDEYMSDRAELERVLAIGAERAGEIATKVLAEVYDKIGFL 341
>sp|P67590|SYW_MYCTU Tryptophan--tRNA ligase OS=Mycobacterium tuberculosis GN=trpS PE=3
SV=1
Length = 336
Score = 261 bits (666), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 144/346 (41%), Positives = 200/346 (57%), Gaps = 27/346 (7%)
Query: 73 SSSSVKKRIVSGVQPTG-SIHLGNYLGAIKNWIALQ--------------ITLPYDTQQL 117
S+ + +RI SGVQPT S+HLGN LGA+ W+ LQ IT+P D + L
Sbjct: 2 STPTGSRRIFSGVQPTSDSLHLGNALGAVAQWVGLQDDHDAFFCVVDLHAITIPQDPEAL 61
Query: 118 SKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 177
+ T TAA YLA GID +A++FVQS V AH +L W+L T G ++M QFK+KS +
Sbjct: 62 RRRTLITAAQYLALGIDPGRATIFVQSQVPAHTQLAWVLGCFTGFGQASRMTQFKDKSAR 121
Query: 178 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 237
G E V L TYPVL A+D+L Y ++ VPVGEDQ+QHLEL R++A+R N + G
Sbjct: 122 QGSEATTVGLFTYPVLQAADVLAYDTELVPVGEDQRQHLELARDVAQRFNSRFPG----- 176
Query: 238 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 297
VP+ LIP A++ L D SKMSKSA +D INLLD + A KI+
Sbjct: 177 -------TLVVPDVLIPKMTAKIYDLQDPTSKMSKSAGTDAGLINLLDDPALSAKKIRSA 229
Query: 298 KTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHL 357
TDS + +D +P +NLL+I ++G + + +G K +A++E +
Sbjct: 230 VTDSERDIRYDPDVKPGVSNLLNIQSAVTGTDIDVLVDGYAGHGYGDLKKDTAEAVVEFV 289
Query: 358 HPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
+PIQ R +E+ +D A L+ VLA GA +A D+A T+ VY +GFL
Sbjct: 290 NPIQARVDELTADPAELEAVLAAGAQRAHDVASKTVQRVYDRLGFL 335
>sp|P67591|SYW_MYCBO Tryptophan--tRNA ligase OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=trpS PE=3 SV=1
Length = 336
Score = 261 bits (666), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 144/346 (41%), Positives = 200/346 (57%), Gaps = 27/346 (7%)
Query: 73 SSSSVKKRIVSGVQPTG-SIHLGNYLGAIKNWIALQ--------------ITLPYDTQQL 117
S+ + +RI SGVQPT S+HLGN LGA+ W+ LQ IT+P D + L
Sbjct: 2 STPTGSRRIFSGVQPTSDSLHLGNALGAVAQWVGLQDDHDAFFCVVDLHAITIPQDPEAL 61
Query: 118 SKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 177
+ T TAA YLA GID +A++FVQS V AH +L W+L T G ++M QFK+KS +
Sbjct: 62 RRRTLITAAQYLALGIDPGRATIFVQSQVPAHTQLAWVLGCFTGFGQASRMTQFKDKSAR 121
Query: 178 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 237
G E V L TYPVL A+D+L Y ++ VPVGEDQ+QHLEL R++A+R N + G
Sbjct: 122 QGSEATTVGLFTYPVLQAADVLAYDTELVPVGEDQRQHLELARDVAQRFNSRFPG----- 176
Query: 238 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 297
VP+ LIP A++ L D SKMSKSA +D INLLD + A KI+
Sbjct: 177 -------TLVVPDVLIPKMTAKIYDLQDPTSKMSKSAGTDAGLINLLDDPALSAKKIRSA 229
Query: 298 KTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHL 357
TDS + +D +P +NLL+I ++G + + +G K +A++E +
Sbjct: 230 VTDSERDIRYDPDVKPGVSNLLNIQSAVTGTDIDVLVDGYAGHGYGDLKKDTAEAVVEFV 289
Query: 358 HPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
+PIQ R +E+ +D A L+ VLA GA +A D+A T+ VY +GFL
Sbjct: 290 NPIQARVDELTADPAELEAVLAAGAQRAHDVASKTVQRVYDRLGFL 335
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,809,529
Number of Sequences: 539616
Number of extensions: 6203609
Number of successful extensions: 16608
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 15996
Number of HSP's gapped (non-prelim): 221
length of query: 405
length of database: 191,569,459
effective HSP length: 120
effective length of query: 285
effective length of database: 126,815,539
effective search space: 36142428615
effective search space used: 36142428615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)