Query 015509
Match_columns 405
No_of_seqs 182 out of 1337
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:58:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02886 aminoacyl-tRNA ligase 100.0 4.8E-98 1E-102 754.4 37.8 347 58-404 26-386 (389)
2 KOG2713 Mitochondrial tryptoph 100.0 6.4E-97 1E-101 704.0 28.8 317 78-405 13-347 (347)
3 PRK12284 tryptophanyl-tRNA syn 100.0 7.2E-90 1.6E-94 699.7 33.7 306 79-403 3-332 (431)
4 PRK12556 tryptophanyl-tRNA syn 100.0 9.3E-89 2E-93 679.0 32.9 306 78-403 3-332 (332)
5 PRK00927 tryptophanyl-tRNA syn 100.0 2.2E-88 4.7E-93 677.6 33.7 313 79-404 2-332 (333)
6 PRK12283 tryptophanyl-tRNA syn 100.0 1.2E-87 2.5E-92 678.6 34.9 319 78-403 2-397 (398)
7 COG0180 TrpS Tryptophanyl-tRNA 100.0 1.1E-86 2.5E-91 653.5 27.3 291 77-384 4-314 (314)
8 PRK12282 tryptophanyl-tRNA syn 100.0 8.4E-85 1.8E-89 651.0 33.6 310 78-404 2-331 (333)
9 TIGR00233 trpS tryptophanyl-tR 100.0 6.6E-83 1.4E-87 636.6 31.6 305 77-402 1-328 (328)
10 PRK12285 tryptophanyl-tRNA syn 100.0 9.7E-70 2.1E-74 548.3 26.7 271 77-380 65-364 (368)
11 cd00806 TrpRS_core catalytic c 100.0 1E-69 2.3E-74 531.3 25.2 260 80-356 1-280 (280)
12 PRK08560 tyrosyl-tRNA syntheta 100.0 3E-64 6.5E-69 503.0 23.0 254 77-367 29-323 (329)
13 PTZ00126 tyrosyl-tRNA syntheta 100.0 6.6E-64 1.4E-68 508.0 23.6 257 76-366 64-365 (383)
14 PTZ00348 tyrosyl-tRNA syntheta 100.0 4E-60 8.8E-65 506.4 26.5 267 77-367 31-340 (682)
15 PLN02486 aminoacyl-tRNA ligase 100.0 3.4E-58 7.4E-63 465.7 27.5 263 76-368 71-369 (383)
16 PF00579 tRNA-synt_1b: tRNA sy 100.0 9.7E-56 2.1E-60 434.2 14.9 261 77-358 4-292 (292)
17 cd00395 Tyr_Trp_RS_core cataly 100.0 4.8E-54 1E-58 419.4 22.7 234 80-356 1-273 (273)
18 cd00805 TyrRS_core catalytic c 100.0 2E-54 4.4E-59 421.3 18.6 236 79-356 1-269 (269)
19 PRK05912 tyrosyl-tRNA syntheta 100.0 2.2E-46 4.7E-51 383.7 20.4 243 77-362 32-313 (408)
20 PRK13354 tyrosyl-tRNA syntheta 100.0 5.9E-44 1.3E-48 365.7 21.2 245 76-364 31-313 (410)
21 KOG2145 Cytoplasmic tryptophan 100.0 4.5E-44 9.7E-49 342.6 13.4 265 76-369 83-383 (397)
22 KOG2144 Tyrosyl-tRNA synthetas 100.0 2.7E-42 5.9E-47 330.2 16.5 253 77-367 33-334 (360)
23 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 6.6E-39 1.4E-43 325.6 17.5 236 78-359 30-294 (377)
24 PTZ00348 tyrosyl-tRNA syntheta 100.0 6.1E-36 1.3E-40 320.6 19.5 211 110-365 425-661 (682)
25 COG0162 TyrS Tyrosyl-tRNA synt 100.0 2.6E-30 5.7E-35 262.8 17.0 258 78-369 32-359 (401)
26 KOG2623 Tyrosyl-tRNA synthetas 99.6 1.7E-15 3.7E-20 151.3 13.1 242 78-359 63-351 (467)
27 cd00808 GluRS_core catalytic c 99.6 6.9E-15 1.5E-19 141.4 9.2 160 86-296 9-191 (239)
28 cd00802 class_I_aaRS_core cata 99.4 1.7E-12 3.7E-17 114.7 10.3 63 190-274 78-143 (143)
29 cd00418 GlxRS_core catalytic c 98.9 3.7E-09 8E-14 101.3 9.7 160 86-295 9-181 (230)
30 PRK14895 gltX glutamyl-tRNA sy 98.4 3.5E-06 7.5E-11 89.3 13.0 189 80-296 4-269 (513)
31 PRK01406 gltX glutamyl-tRNA sy 98.4 1E-05 2.2E-10 85.5 15.8 184 86-296 12-280 (476)
32 PRK05710 glutamyl-Q tRNA(Asp) 98.3 1.7E-06 3.7E-11 86.0 7.3 166 86-275 13-242 (299)
33 cd00674 LysRS_core_class_I cat 98.2 3E-06 6.6E-11 86.1 8.4 59 201-285 226-288 (353)
34 TIGR00464 gltX_bact glutamyl-t 98.2 4.7E-05 1E-09 80.3 17.4 183 86-296 9-270 (470)
35 PRK00750 lysK lysyl-tRNA synth 98.1 1.4E-05 3E-10 85.2 9.9 65 201-291 233-304 (510)
36 PLN02627 glutamyl-tRNA synthet 98.0 0.00043 9.2E-09 73.9 18.8 85 84-168 51-159 (535)
37 cd09287 GluRS_non_core catalyt 98.0 2E-05 4.2E-10 76.2 7.7 151 83-274 6-171 (240)
38 PRK12558 glutamyl-tRNA synthet 97.8 0.00033 7.2E-09 73.4 14.3 184 86-296 10-269 (445)
39 cd00807 GlnRS_core catalytic c 97.8 4.6E-05 1E-09 73.5 7.2 146 86-275 9-170 (238)
40 TIGR03838 queuosine_YadB gluta 97.8 0.0002 4.3E-09 70.5 11.1 166 86-275 8-235 (272)
41 COG0008 GlnS Glutamyl- and glu 97.7 8.2E-05 1.8E-09 78.4 7.4 171 81-275 10-256 (472)
42 PLN03233 putative glutamate-tR 97.5 0.00022 4.8E-09 75.9 7.8 169 80-274 11-251 (523)
43 PRK04156 gltX glutamyl-tRNA sy 97.5 0.00041 8.8E-09 74.6 9.7 171 78-274 101-343 (567)
44 PTZ00402 glutamyl-tRNA synthet 97.5 0.00034 7.3E-09 75.5 9.0 170 80-274 52-293 (601)
45 PRK12410 glutamylglutaminyl-tR 97.5 0.00038 8.2E-09 72.7 8.7 81 86-168 7-104 (433)
46 cd00671 ArgRS_core catalytic c 97.5 0.00051 1.1E-08 64.9 8.8 140 82-227 6-184 (212)
47 cd00668 Ile_Leu_Val_MetRS_core 97.3 0.0016 3.5E-08 64.8 10.6 59 202-284 226-285 (312)
48 COG1384 LysS Lysyl-tRNA synthe 97.3 0.00017 3.6E-09 75.9 3.4 60 201-285 228-290 (521)
49 PRK00260 cysS cysteinyl-tRNA s 97.3 0.012 2.5E-07 62.2 17.2 68 193-285 211-279 (463)
50 PF00749 tRNA-synt_1c: tRNA sy 97.3 0.00093 2E-08 67.1 8.6 166 86-275 9-249 (314)
51 TIGR00467 lysS_arch lysyl-tRNA 97.3 0.00057 1.2E-08 73.0 7.0 23 78-100 19-41 (515)
52 PF01921 tRNA-synt_1f: tRNA sy 97.2 0.00041 8.9E-09 70.6 5.3 69 201-294 233-309 (360)
53 cd02156 nt_trans nucleotidyl t 97.1 0.0015 3.3E-08 54.6 6.9 47 205-274 59-105 (105)
54 PRK01611 argS arginyl-tRNA syn 97.1 0.0017 3.7E-08 69.2 8.5 174 82-286 117-336 (507)
55 cd00672 CysRS_core catalytic c 97.0 0.0059 1.3E-07 58.1 10.7 57 79-135 22-105 (213)
56 cd00812 LeuRS_core catalytic c 97.0 0.0019 4.2E-08 64.6 7.7 66 87-153 11-103 (314)
57 PLN02907 glutamate-tRNA ligase 97.0 0.0024 5.1E-08 70.8 8.9 85 80-166 213-316 (722)
58 TIGR00463 gltX_arch glutamyl-t 96.1 0.012 2.5E-07 63.6 6.5 86 79-166 92-196 (560)
59 PRK05347 glutaminyl-tRNA synth 96.0 0.017 3.8E-07 62.0 7.2 85 81-166 30-133 (554)
60 PTZ00437 glutaminyl-tRNA synth 95.7 0.019 4.2E-07 61.8 6.3 85 80-166 51-154 (574)
61 TIGR00440 glnS glutaminyl-tRNA 95.6 0.026 5.7E-07 60.4 6.7 81 86-167 8-105 (522)
62 PRK14703 glutaminyl-tRNA synth 95.3 0.037 8E-07 61.8 6.8 86 80-166 31-135 (771)
63 PLN02859 glutamine-tRNA ligase 95.2 0.038 8.3E-07 61.5 6.7 84 81-166 265-367 (788)
64 TIGR00234 tyrS tyrosyl-tRNA sy 91.8 0.4 8.7E-06 49.5 6.6 56 258-334 212-267 (377)
65 PRK00133 metG methionyl-tRNA s 88.9 1.2 2.6E-05 49.4 7.6 72 77-151 2-101 (673)
66 PLN02224 methionine-tRNA ligas 87.6 1.5 3.3E-05 48.1 7.4 70 78-150 70-167 (616)
67 PF09334 tRNA-synt_1g: tRNA sy 87.0 1.7 3.6E-05 45.1 6.9 62 86-150 9-97 (391)
68 PRK05743 ileS isoleucyl-tRNA s 86.7 0.81 1.8E-05 52.5 4.8 58 199-282 542-602 (912)
69 PRK12268 methionyl-tRNA synthe 86.3 1.9 4E-05 46.5 7.1 69 79-150 4-102 (556)
70 KOG1147 Glutamyl-tRNA syntheta 86.3 1.2 2.7E-05 47.8 5.4 66 79-146 199-275 (712)
71 COG0143 MetG Methionyl-tRNA sy 82.6 2.6 5.6E-05 45.8 6.2 64 86-152 15-105 (558)
72 cd00818 IleRS_core catalytic c 82.2 0.97 2.1E-05 45.8 2.6 58 201-284 251-311 (338)
73 PRK00390 leuS leucyl-tRNA synt 81.7 4.7 0.0001 45.7 8.1 58 78-136 33-119 (805)
74 PRK12267 methionyl-tRNA synthe 81.4 8.4 0.00018 42.5 9.7 58 202-284 254-311 (648)
75 PRK11893 methionyl-tRNA synthe 80.8 0.76 1.6E-05 48.7 1.4 60 201-285 253-312 (511)
76 cd00814 MetRS_core catalytic c 80.3 6.2 0.00014 39.5 7.6 51 87-137 11-88 (319)
77 PRK14900 valS valyl-tRNA synth 80.2 1.3 2.8E-05 51.7 3.0 71 201-295 490-566 (1052)
78 cd00817 ValRS_core catalytic c 80.2 1.1 2.5E-05 46.0 2.3 60 201-284 295-355 (382)
79 TIGR00456 argS arginyl-tRNA sy 80.0 1.2 2.7E-05 48.2 2.7 63 204-292 330-392 (566)
80 PRK12300 leuS leucyl-tRNA synt 79.7 0.92 2E-05 52.0 1.6 58 201-284 529-589 (897)
81 COG0495 LeuS Leucyl-tRNA synth 78.8 3.5 7.5E-05 46.7 5.7 66 77-142 34-127 (814)
82 PLN02610 probable methionyl-tR 78.7 8.4 0.00018 43.8 8.7 73 78-153 18-119 (801)
83 TIGR00392 ileS isoleucyl-tRNA 78.3 1.4 3.1E-05 50.1 2.6 58 201-284 563-623 (861)
84 TIGR00395 leuS_arch leucyl-tRN 78.1 1.1 2.5E-05 51.4 1.7 71 201-297 572-650 (938)
85 TIGR00435 cysS cysteinyl-tRNA 77.1 1.5 3.3E-05 46.4 2.3 79 192-295 209-293 (465)
86 COG0495 LeuS Leucyl-tRNA synth 75.5 15 0.00033 41.7 9.5 61 202-284 526-591 (814)
87 PRK12418 cysteinyl-tRNA synthe 74.5 2.3 5E-05 44.1 2.7 73 188-284 200-273 (384)
88 PRK05729 valS valyl-tRNA synth 74.2 2.1 4.5E-05 49.0 2.5 61 200-284 471-532 (874)
89 TIGR00398 metG methionyl-tRNA 73.8 9.1 0.0002 41.0 7.1 51 87-137 10-87 (530)
90 PTZ00399 cysteinyl-tRNA-synthe 73.6 16 0.00034 40.6 9.0 27 191-217 257-284 (651)
91 PRK11893 methionyl-tRNA synthe 72.4 15 0.00033 38.9 8.4 51 87-137 12-89 (511)
92 PRK13804 ileS isoleucyl-tRNA s 71.3 1.6 3.5E-05 50.4 0.8 16 199-214 580-595 (961)
93 PRK12267 methionyl-tRNA synthe 71.2 8.1 0.00017 42.6 6.1 58 80-137 6-92 (648)
94 PF00133 tRNA-synt_1: tRNA syn 71.1 2.4 5.2E-05 46.3 2.0 60 201-283 513-572 (601)
95 PRK13208 valS valyl-tRNA synth 70.1 3.6 7.8E-05 46.5 3.1 60 201-284 485-545 (800)
96 cd00814 MetRS_core catalytic c 69.4 2.9 6.3E-05 41.8 2.0 57 203-284 236-292 (319)
97 TIGR00396 leuS_bact leucyl-tRN 68.9 9.3 0.0002 43.6 6.1 57 79-136 31-116 (842)
98 PLN02563 aminoacyl-tRNA ligase 68.8 25 0.00055 40.8 9.6 58 78-135 111-197 (963)
99 PLN02943 aminoacyl-tRNA ligase 68.3 4 8.7E-05 47.2 3.1 86 185-295 518-611 (958)
100 PLN02843 isoleucyl-tRNA synthe 67.1 3.4 7.4E-05 47.8 2.2 16 199-214 561-576 (974)
101 TIGR00422 valS valyl-tRNA synt 66.8 4.2 9E-05 46.4 2.8 61 201-285 477-538 (861)
102 PLN02959 aminoacyl-tRNA ligase 66.7 4.6 0.0001 47.3 3.2 59 201-284 670-730 (1084)
103 PLN02660 pantoate--beta-alanin 66.7 23 0.00049 35.4 7.6 167 83-299 23-213 (284)
104 TIGR03447 mycothiol_MshC cyste 66.5 3.9 8.5E-05 42.8 2.3 71 189-283 228-299 (411)
105 COG0143 MetG Methionyl-tRNA sy 66.3 39 0.00084 36.9 9.9 64 78-147 173-246 (558)
106 cd00818 IleRS_core catalytic c 66.0 22 0.00048 36.0 7.6 14 87-100 12-25 (338)
107 PRK14535 cysS cysteinyl-tRNA s 65.4 27 0.00058 39.1 8.5 36 188-225 432-468 (699)
108 PTZ00419 valyl-tRNA synthetase 65.3 5.9 0.00013 46.0 3.7 59 200-282 536-595 (995)
109 TIGR00435 cysS cysteinyl-tRNA 64.0 28 0.0006 37.0 8.2 59 79-137 23-108 (465)
110 COG0525 ValS Valyl-tRNA synthe 63.8 17 0.00036 41.6 6.7 23 376-399 655-677 (877)
111 PRK06039 ileS isoleucyl-tRNA s 63.1 5 0.00011 46.5 2.5 30 184-214 526-557 (975)
112 PLN02563 aminoacyl-tRNA ligase 63.0 11 0.00023 43.8 5.2 28 200-227 614-642 (963)
113 COG0018 ArgS Arginyl-tRNA synt 63.0 5.7 0.00012 43.4 2.8 68 204-294 337-405 (577)
114 cd00817 ValRS_core catalytic c 62.9 17 0.00038 37.4 6.3 21 87-107 12-37 (382)
115 PLN02381 valyl-tRNA synthetase 62.3 5.9 0.00013 46.4 2.9 59 200-283 606-666 (1066)
116 PLN02286 arginine-tRNA ligase 59.3 10 0.00022 41.5 3.9 66 204-289 330-395 (576)
117 PF04048 Sec8_exocyst: Sec8 ex 57.2 1.4E+02 0.003 26.4 10.8 85 313-403 19-105 (142)
118 PRK12268 methionyl-tRNA synthe 57.0 6.2 0.00014 42.5 1.9 57 204-284 289-346 (556)
119 PF01406 tRNA-synt_1e: tRNA sy 56.8 7 0.00015 39.3 2.0 38 189-226 193-231 (300)
120 TIGR00396 leuS_bact leucyl-tRN 55.5 8.8 0.00019 43.8 2.8 25 201-225 519-544 (842)
121 PLN02882 aminoacyl-tRNA ligase 54.2 10 0.00023 44.8 3.2 77 182-282 546-624 (1159)
122 TIGR00398 metG methionyl-tRNA 53.6 8.6 0.00019 41.2 2.2 55 205-285 285-340 (530)
123 PLN02946 cysteine-tRNA ligase 52.7 75 0.0016 34.8 9.1 34 186-219 261-295 (557)
124 PRK14536 cysS cysteinyl-tRNA s 51.9 8.3 0.00018 41.4 1.8 68 191-283 222-290 (490)
125 COG2442 Uncharacterized conser 49.6 38 0.00082 27.4 4.8 42 312-355 30-71 (79)
126 KOG1149 Glutamyl-tRNA syntheta 48.8 19 0.00041 38.1 3.7 68 79-146 34-117 (524)
127 PLN02946 cysteine-tRNA ligase 48.8 7.9 0.00017 42.2 1.0 59 77-135 79-165 (557)
128 PF05957 DUF883: Bacterial pro 48.0 83 0.0018 25.6 6.8 56 343-398 15-71 (94)
129 PRK12451 arginyl-tRNA syntheta 47.8 18 0.00039 39.4 3.6 61 203-288 326-387 (562)
130 PRK13208 valS valyl-tRNA synth 47.6 29 0.00063 39.3 5.3 30 78-107 39-74 (800)
131 PLN02610 probable methionyl-tR 46.4 73 0.0016 36.4 8.2 31 246-284 330-360 (801)
132 PHA01929 putative scaffolding 43.9 1.7E+02 0.0037 29.1 9.1 38 308-345 114-152 (306)
133 PF00750 tRNA-synt_1d: tRNA sy 43.4 9.2 0.0002 39.0 0.5 73 203-296 240-312 (354)
134 PRK14536 cysS cysteinyl-tRNA s 42.6 1.1E+02 0.0024 33.0 8.4 24 77-100 22-46 (490)
135 KOG0433 Isoleucyl-tRNA synthet 42.6 82 0.0018 35.7 7.5 28 372-399 746-775 (937)
136 TIGR00018 panC pantoate--beta- 42.5 95 0.0021 31.0 7.4 69 201-299 142-210 (282)
137 PTZ00427 isoleucine-tRNA ligas 42.1 31 0.00067 41.1 4.6 34 183-216 652-687 (1205)
138 PLN02224 methionine-tRNA ligas 40.5 18 0.00039 40.0 2.2 71 201-296 320-395 (616)
139 PRK14534 cysS cysteinyl-tRNA s 39.7 14 0.0003 39.7 1.1 67 194-285 225-292 (481)
140 KOG0435 Leucyl-tRNA synthetase 38.2 32 0.00068 38.4 3.5 59 75-133 55-141 (876)
141 PRK00390 leuS leucyl-tRNA synt 37.9 23 0.0005 40.3 2.6 25 201-225 522-547 (805)
142 COG0215 CysS Cysteinyl-tRNA sy 37.0 13 0.00028 39.6 0.4 73 189-285 208-281 (464)
143 PLN02943 aminoacyl-tRNA ligase 36.8 37 0.0008 39.5 4.1 30 78-107 89-124 (958)
144 PRK00133 metG methionyl-tRNA s 35.0 15 0.00033 40.8 0.6 31 246-284 311-341 (673)
145 PF09551 Spore_II_R: Stage II 34.5 1.4E+02 0.0031 26.5 6.4 49 343-395 19-67 (130)
146 PRK10404 hypothetical protein; 34.0 1.8E+02 0.0039 24.5 6.8 56 343-398 22-78 (101)
147 COG0018 ArgS Arginyl-tRNA synt 33.9 63 0.0014 35.5 5.1 19 82-100 123-141 (577)
148 KOG2007 Cysteinyl-tRNA synthet 33.7 19 0.00042 38.6 1.1 38 186-223 242-282 (586)
149 PF00133 tRNA-synt_1: tRNA syn 33.2 28 0.00061 38.1 2.3 30 78-107 24-59 (601)
150 PF09334 tRNA-synt_1g: tRNA sy 33.2 8.2 0.00018 40.0 -1.8 30 246-283 309-338 (391)
151 PRK14535 cysS cysteinyl-tRNA s 32.4 2.1E+02 0.0046 32.3 8.8 62 76-137 246-335 (699)
152 PRK05729 valS valyl-tRNA synth 32.1 30 0.00065 39.7 2.4 29 79-107 38-72 (874)
153 PF04255 DUF433: Protein of un 32.0 52 0.0011 24.4 2.9 37 312-350 18-54 (56)
154 COG0525 ValS Valyl-tRNA synthe 31.9 27 0.00059 40.0 1.9 21 87-107 44-69 (877)
155 TIGR00422 valS valyl-tRNA synt 31.6 31 0.00066 39.5 2.3 30 78-107 34-69 (861)
156 COG0060 IleS Isoleucyl-tRNA sy 31.2 31 0.00066 39.9 2.2 27 259-294 594-620 (933)
157 PTZ00419 valyl-tRNA synthetase 29.8 34 0.00074 39.9 2.3 30 78-107 61-96 (995)
158 PRK14900 valS valyl-tRNA synth 28.4 37 0.00081 39.8 2.3 30 78-107 49-84 (1052)
159 PTZ00427 isoleucine-tRNA ligas 26.8 1E+02 0.0022 37.0 5.5 21 79-99 104-125 (1205)
160 KOG0859 Synaptobrevin/VAMP-lik 25.2 4E+02 0.0087 25.5 8.0 67 330-398 80-150 (217)
161 PF15605 Toxin_52: Putative to 24.7 99 0.0021 26.3 3.6 36 364-400 66-101 (103)
162 KOG0436 Methionyl-tRNA synthet 24.1 2.5E+02 0.0053 30.1 7.0 67 86-155 49-145 (578)
163 TIGR00392 ileS isoleucyl-tRNA 23.9 51 0.0011 37.7 2.4 22 78-99 37-59 (861)
164 KOG0432 Valyl-tRNA synthetase 23.9 62 0.0013 37.2 2.9 74 241-362 572-647 (995)
165 COG1703 ArgK Putative periplas 23.8 1.6E+02 0.0034 30.1 5.4 61 79-146 81-159 (323)
166 PLN02381 valyl-tRNA synthetase 23.8 52 0.0011 38.8 2.4 30 78-107 129-164 (1066)
167 KOG0437 Leucyl-tRNA synthetase 23.7 1.1E+02 0.0024 34.8 4.7 31 347-382 789-819 (1080)
168 COG3783 CybC Soluble cytochrom 23.2 1.6E+02 0.0034 24.9 4.4 42 358-399 53-94 (100)
169 PRK12418 cysteinyl-tRNA synthe 23.0 2.5E+02 0.0053 29.3 6.9 59 78-136 9-96 (384)
170 PF05600 DUF773: Protein of un 21.8 4.4E+02 0.0095 28.5 8.7 72 329-403 96-171 (507)
171 PRK12451 arginyl-tRNA syntheta 21.7 1.3E+02 0.0028 32.8 4.8 19 82-100 119-137 (562)
172 PRK06039 ileS isoleucyl-tRNA s 21.5 59 0.0013 37.9 2.2 30 78-107 42-77 (975)
173 TIGR00395 leuS_arch leucyl-tRN 21.0 56 0.0012 37.9 1.9 30 78-107 26-61 (938)
174 PLN02843 isoleucyl-tRNA synthe 20.9 62 0.0013 37.7 2.3 30 78-107 33-68 (974)
175 PF12057 DUF3538: Domain of un 20.8 64 0.0014 28.3 1.8 46 352-400 10-55 (120)
176 PF01406 tRNA-synt_1e: tRNA sy 20.7 4E+02 0.0087 26.9 7.7 59 78-136 8-94 (300)
177 PF09164 VitD-bind_III: Vitami 20.7 53 0.0012 25.8 1.1 26 332-357 1-26 (68)
No 1
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.8e-98 Score=754.42 Aligned_cols=347 Identities=80% Similarity=1.229 Sum_probs=319.8
Q ss_pred eeeeccCCCCCCCCCCCCCCCceEEEeeCCCCcchhhhHHHHHHHHHHhc--------------cCCCcChHHHHHHHHH
Q 015509 58 CYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRE 123 (405)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ--------------it~~~d~~~l~~~~~~ 123 (405)
|+++.++..+.++.+.+.-.+.+|||||||||.+|||||+|+|++|+++| +|..++++.+++++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~m~~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~~~~~~~~IADlHAlt~~~~~~~lr~~~~~ 105 (389)
T PLN02886 26 CSAATAATAPEKEAPPKVARKKRVVSGVQPTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATRS 105 (389)
T ss_pred hhhhhccCCCccCCCcccCCCCeEEEEECCCCccHHHHHHHHHHHHHHHhccCCEEEEEecHHHhhCCCCHHHHHHHHHH
Confidence 44444434444444444444568999999999999999999999999999 5668899999999999
Q ss_pred HHHHHHHcCCCCCceEEEEcCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhcccc
Q 015509 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS 203 (405)
Q Consensus 124 ~~~~~lA~GiDp~k~~if~qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~a 203 (405)
++++|+||||||+|++||+||++++|+||+|+|+|.++++||+||+|||++.+..+++++++|+|+||+|||||||+|++
T Consensus 106 ~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~a 185 (389)
T PLN02886 106 TAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQA 185 (389)
T ss_pred HHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999987765567899999999999999999999
Q ss_pred ceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeec
Q 015509 204 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 283 (405)
Q Consensus 204 dlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L 283 (405)
|+||||+||+||+|||||||+|||+.||...++++|++.+.+|++|++++++.+++||||+||++|||||+|+++|+|+|
T Consensus 186 ~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L 265 (389)
T PLN02886 186 DLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINL 265 (389)
T ss_pred CeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEe
Confidence 99999999999999999999999999987666666666667999999999876689999988888999999987899999
Q ss_pred CCCHHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHHhhCCCCHHHHHHHHhcCCcchHHHHHHHHHHHHhhHHHHH
Q 015509 284 LDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVR 363 (405)
Q Consensus 284 ~Dspe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~~~~~gdlK~~Lae~i~~~L~pirer 363 (405)
+|+||+|++|||+|+||+.+++++++|++|+++|++.||..+++.+++|++++|+++++++||+.|+++|+++|+|||+|
T Consensus 266 ~Ds~e~I~kKI~~a~TD~~~~i~~~~p~~p~v~nl~~i~~~~~~~~~eei~~~~~~~~~g~~K~~Lae~I~~~L~Pirer 345 (389)
T PLN02886 266 LDPPDVIANKIKRCKTDSFPGLEFDNPERPECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDALIEHLSPIQVR 345 (389)
T ss_pred cCCHHHHHHHHhcCCCCCCCCccCCCCCCcccccHHHHHHHccCCCHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 015509 364 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 404 (405)
Q Consensus 364 ~~e~~~~~~~l~~iL~~Ga~kAr~iA~~tl~~Vr~a~Gl~~ 404 (405)
|+++++|++||++||++|++|||++|++||++||++|||.+
T Consensus 346 ~~~l~~d~~~l~~iL~~Ga~kAr~~A~~tl~~vr~~~Gl~~ 386 (389)
T PLN02886 346 YEEIMSDPSYLDSVLKEGADAAAEIADRTLANVYQAMGFVQ 386 (389)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999954
No 2
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-97 Score=703.98 Aligned_cols=317 Identities=54% Similarity=0.838 Sum_probs=307.8
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHhc------------------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceE
Q 015509 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ------------------ITLPYDTQQLSKATRETAAIYLACGIDNSKAS 139 (405)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ------------------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~ 139 (405)
+.++||||||||.+|||||+|++++|++|| ||+++||..+++++.++++.++||||||+|+.
T Consensus 13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~ 92 (347)
T KOG2713|consen 13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSS 92 (347)
T ss_pred cceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccce
Confidence 679999999999999999999999999999 78899999999999999999999999999999
Q ss_pred EEEcCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchHHHHHHH
Q 015509 140 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 219 (405)
Q Consensus 140 if~qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLt 219 (405)
+|+||+||+|+|++|+|+|.++++||+||+|||+|+.+.+.+..++|+|+||+|||||||+|++|+||||+||.||+||+
T Consensus 93 lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILLYksThVPVGeDQsQHleL~ 172 (347)
T KOG2713|consen 93 LFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILLYKSTHVPVGEDQSQHLELA 172 (347)
T ss_pred eeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhhhccccccCCccHHHHHHHH
Confidence 99999999999999999999999999999999999876555788999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhcccC
Q 015509 220 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 299 (405)
Q Consensus 220 Rdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~T 299 (405)
|++|++||+.||+ ++|++|+.++...+++|++|+||.+|||||+|++.++|+|+|+|++|.+||+||.|
T Consensus 173 r~lA~~fN~~Y~~-----------~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~ka~T 241 (347)
T KOG2713|consen 173 RHLAQAFNKTYGT-----------EIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKKAQT 241 (347)
T ss_pred HHHHHHHhhhccC-----------eeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHHHhc
Confidence 9999999999996 57999999998766899999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCCccchHHHHHHhhCCCCHHHHHHHHhcCCcchHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHH
Q 015509 300 DSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLA 379 (405)
Q Consensus 300 d~~~~i~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~~~~~gdlK~~Lae~i~~~L~pirer~~e~~~~~~~l~~iL~ 379 (405)
|....++||+.+||+|+|+++||+.+++++++|+.+++..++++++|..|+|+|+++|.|||++|+++.++++|+++||.
T Consensus 242 D~~~~vtYd~~~RpgvsNLlni~aaVt~~s~eeV~~~~a~~~~~~fK~~vaeAvie~L~PIr~~fee~~~~~~~l~kvl~ 321 (347)
T KOG2713|consen 242 DNTSGVTYDPANRPGVSNLLNIYAAVTGKSIEEVVEESANMSTADFKDNVAEAVIEHLAPIRTEFEELINEPEYLDKVLE 321 (347)
T ss_pred ccccceeeCCccccchhHHHHHHHHHcCCCHHHHHHHhccCCHHHHHHHHHHHHHHHhccHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCC
Q 015509 380 DGAAKAADIADATLNNVYQAMGFLRR 405 (405)
Q Consensus 380 ~Ga~kAr~iA~~tl~~Vr~a~Gl~~~ 405 (405)
+|++|||+.|.+||.+||+.|||..+
T Consensus 322 ~GaekAre~A~~~l~~ik~~~Gf~~~ 347 (347)
T KOG2713|consen 322 EGAEKARELAAKNLEEIKQLMGFLQR 347 (347)
T ss_pred HhHHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999764
No 3
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.2e-90 Score=699.74 Aligned_cols=306 Identities=36% Similarity=0.594 Sum_probs=285.2
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHhc----------------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 015509 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ----------------ITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 142 (405)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylg~i~~~~~lQ----------------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~ 142 (405)
.+|||||||||.||||||+|+|++|+++| +|..+|++.+++++++++++|+||||||+|++||+
T Consensus 3 ~rvlSGiqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDPek~~if~ 82 (431)
T PRK12284 3 TRVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDPERVTFYR 82 (431)
T ss_pred eEEEEEecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEE
Confidence 58999999999999999999999999995 56578999999999999999999999999999999
Q ss_pred cCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhh---C---CCCCcchhhhhhHHHhhhhhccccceeccccchHHHH
Q 015509 143 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA---G---GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 216 (405)
Q Consensus 143 qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~---~---~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hl 216 (405)
||++|+|.||+|+|+|++++++|+||+|||++..+. + .+++++|+|+||+|||||||+|++|+||||.||+||+
T Consensus 83 QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG~DQ~qHl 162 (431)
T PRK12284 83 QSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQHI 162 (431)
T ss_pred CCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEcchhHHHH
Confidence 999999999999999999999999999999875432 1 1457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhc
Q 015509 217 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 296 (405)
Q Consensus 217 eLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~k 296 (405)
|||||||+|||++||. ++|++|++++...+++|||| +| +|||||+ +|+|+|+|+|++|++|||+
T Consensus 163 ELaRdIA~rFN~~yg~-----------~~F~~Pe~~i~~~~~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~~ 226 (431)
T PRK12284 163 EMARDIAQRFNHLYGG-----------EFFVLPEAVIEESVATLPGL-DG-RKMSKSY---DNTIPLFAPREELKKAIFS 226 (431)
T ss_pred HHHHHHHHHHhhhcCC-----------cccCCCccccccccccccCC-CC-ccccCCC---CCEeeecCCHHHHHHHHhc
Confidence 9999999999999973 46999999998767899999 56 5999998 4899999999999999999
Q ss_pred ccCCCCCCcccCCCCCCccchHHHHHHhhCC-CCHHHHHHHHh-cCCcchHHHHHHHHHHHHhhHHHHHHHHHhcCHHHH
Q 015509 297 CKTDSSAGLEFDNLERPECNNLLSIYQLISG-KTKGEVAEECQ-NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYL 374 (405)
Q Consensus 297 A~Td~~~~i~~~~~~rpev~nll~i~~~~t~-~~~eel~~~y~-~~~~gdlK~~Lae~i~~~L~pirer~~e~~~~~~~l 374 (405)
|+||+.. ..++++|++||||+||++|++ +++++++++|. +++|++||+.|+++|+++|+|||+||+++++|++||
T Consensus 227 A~TDs~~---~~~~~~pe~snLl~i~~~~~~~~~~eel~~~~~~g~~~g~~K~~Lae~i~~~L~PiRer~~~l~~d~~~l 303 (431)
T PRK12284 227 IVTDSRA---PGEPKDTEGSALFQLYQAFATPEETAAFRQALADGIGWGDAKQRLFERIDRELAPMRERYEALIARPADI 303 (431)
T ss_pred CCCCCCC---CCCCCCCCcchHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 9999875 235788999999999999975 67999999997 789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 015509 375 DKVLADGAAKAADIADATLNNVYQAMGFL 403 (405)
Q Consensus 375 ~~iL~~Ga~kAr~iA~~tl~~Vr~a~Gl~ 403 (405)
++||++|++|||++|++||++||++|||.
T Consensus 304 ~~iL~~Ga~kAr~~A~~tl~~vr~~~Gl~ 332 (431)
T PRK12284 304 EDILLAGAAKARRIATPFLAELREAVGLR 332 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 99999999999999999999999999985
No 4
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.3e-89 Score=679.00 Aligned_cols=306 Identities=36% Similarity=0.592 Sum_probs=284.5
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHhc----------------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 015509 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ----------------ITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 141 (405)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ----------------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if 141 (405)
+.+|||||||||.+|||||+|++++|+++| +|..++++.+++++++++++|+||||||+|++||
T Consensus 3 ~~~v~sGiqPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if 82 (332)
T PRK12556 3 EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFY 82 (332)
T ss_pred CCEEEEEECCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEE
Confidence 458999999999999999999999999987 5657899999999999999999999999999999
Q ss_pred EcCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhC------CCCCcchhhhhhHHHhhhhhccccceeccccchHHH
Q 015509 142 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG------GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 215 (405)
Q Consensus 142 ~qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~------~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~h 215 (405)
+||++++|++|+|+|+|.+++|||+||+|||++..... ++++++|+++||+|||||||+|++|+||||+||+||
T Consensus 83 ~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~d~VpvG~DQ~qh 162 (332)
T PRK12556 83 RQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQATHVPVGKDQIQH 162 (332)
T ss_pred ECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhhccCCEEEeccccHHH
Confidence 99999999999999999999999999999999865321 246799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhh
Q 015509 216 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 295 (405)
Q Consensus 216 leLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 295 (405)
+|||||||+|||++|| .+|++|+++++++++++||| +| +|||||++ |+|+|+|+|++|++|||
T Consensus 163 leLtRdiA~rfn~~yg------------~~f~~P~~~~~~~~~~l~gL-dg-~KMSKS~~---n~I~L~D~p~~I~kKI~ 225 (332)
T PRK12556 163 IEIARDIATYFNHTFG------------DTFTLPEYVIQEEGAILPGL-DG-RKMSKSYG---NVIPLFAEQEKLRKLIF 225 (332)
T ss_pred HHHHHHHHHHHHHhcc------------ccCCCceeccccccccccCC-CC-CCCCCCCC---CcccccCCHHHHHHHHH
Confidence 9999999999999998 56999999986655789998 67 59999984 68999999999999999
Q ss_pred cccCCCCCCcccCCCCCCccchHHHHHHhhCC-CCHHHHHHHHh-cCCcchHHHHHHHHHHHHhhHHHHHHHHHhcCHHH
Q 015509 296 RCKTDSSAGLEFDNLERPECNNLLSIYQLISG-KTKGEVAEECQ-NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAY 373 (405)
Q Consensus 296 kA~Td~~~~i~~~~~~rpev~nll~i~~~~t~-~~~eel~~~y~-~~~~gdlK~~Lae~i~~~L~pirer~~e~~~~~~~ 373 (405)
+|+||+.+ .+.+++|++||+|+||++|++ +++++++++|. +++|++||+.|++.|+++|+|+|+||+++++|++|
T Consensus 226 ka~Td~~~---~~~~~~p~~~~l~~i~~~~~~~~~~eei~~~y~~~~~~~~~K~~lae~i~~~l~pire~~~~~~~~~~~ 302 (332)
T PRK12556 226 KIKTDSSL---PNEPKDPETSALFTIYKEFATEEEVQSMREKYETGIGWGDVKKELFRVVDRELAGPREKYAMYMNEPSL 302 (332)
T ss_pred HhccCCCc---ccCCCCcchhHHHHHHHHHCCchhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 99999876 235788999999999999975 67999999998 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 015509 374 LDKVLADGAAKAADIADATLNNVYQAMGFL 403 (405)
Q Consensus 374 l~~iL~~Ga~kAr~iA~~tl~~Vr~a~Gl~ 403 (405)
|++||++|++|||++|++||++||++|||.
T Consensus 303 ~~~il~~G~~kA~~~A~~tl~~v~~~~g~~ 332 (332)
T PRK12556 303 LDEALEKGAERAREIAKPNLAEIKKAIGFE 332 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999983
No 5
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.2e-88 Score=677.62 Aligned_cols=313 Identities=57% Similarity=0.932 Sum_probs=294.4
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHhc--------------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcC
Q 015509 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 144 (405)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylg~i~~~~~lQ--------------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS 144 (405)
+++||||+|||.||||||+|++++|++|| +|...+++.+++++++++++|+||||||+|+.||+||
T Consensus 2 ~~v~~G~~PTG~lHLG~~~g~~~~~~~lQ~~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS 81 (333)
T PRK00927 2 KRVLSGIQPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQS 81 (333)
T ss_pred CEEEEeeCCCccchHHhHHHHHHHHHHHHhcCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeC
Confidence 68999999999999999999999999999 3445689999999999999999999999999999999
Q ss_pred CchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchHHHHHHHHHHHH
Q 015509 145 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 224 (405)
Q Consensus 145 ~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLtRdia~ 224 (405)
+|++|.+++|+++|.+++++|+|+++||++..+.+ +++++|+|+||+|||||||+|++|+||||+||+||+|||||||+
T Consensus 82 ~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia~ 160 (333)
T PRK00927 82 HVPEHAELAWILNCITPLGELERMTQFKDKSAKQK-ENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIAR 160 (333)
T ss_pred CCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhccC-CCCCcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999998864433 67899999999999999999999999999999999999999999
Q ss_pred HHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhcccCCCCCC
Q 015509 225 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304 (405)
Q Consensus 225 r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~Td~~~~ 304 (405)
+||++|| .+|++|+++++..+++||||+++++|||||+|++.|+|+|+|+|++|++|||+|+||+...
T Consensus 161 ~~n~~~~------------~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~a~td~~~~ 228 (333)
T PRK00927 161 RFNNLYG------------EVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSERL 228 (333)
T ss_pred Hhhhhcc------------ccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHhCCCCCCcc
Confidence 9999998 5699999999875679999966666999999877799999999999999999999999873
Q ss_pred --cccCCCCCCccchHHHHHHhhCCCCHHHHHHHHh--cCCcchHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHH
Q 015509 305 --LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLAD 380 (405)
Q Consensus 305 --i~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~pirer~~e~~~~~~~l~~iL~~ 380 (405)
+.++++++|++||+++||++|++++++|++++|. +++|++||+.|+++|+++|+|+|+||+++++|++||++||++
T Consensus 229 ~~~~~~~~~~p~~~~l~~~~~~~~~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~~~~~~~~il~~ 308 (333)
T PRK00927 229 REIRYDLPNKPEVSNLLTIYSALSGESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLADPAYLDEILAE 308 (333)
T ss_pred cccccCCCCCCccccHHHHHHHhCCCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 4578899999999999999999999999999998 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCC
Q 015509 381 GAAKAADIADATLNNVYQAMGFLR 404 (405)
Q Consensus 381 Ga~kAr~iA~~tl~~Vr~a~Gl~~ 404 (405)
|++|||++|++||++||++|||.+
T Consensus 309 G~~~a~~~a~~~l~~v~~~~g~~~ 332 (333)
T PRK00927 309 GAEKARAVASKTLKEVREAMGLLR 332 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999964
No 6
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-87 Score=678.56 Aligned_cols=319 Identities=35% Similarity=0.592 Sum_probs=289.8
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHhc--------------cCCC-cChHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 015509 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLP-YDTQQLSKATRETAAIYLACGIDNSKASVFV 142 (405)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ--------------it~~-~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~ 142 (405)
+.+|||||||||.||||||+|++++|+++| +|.. ++++.+++++++++++|+||||||+|+.||+
T Consensus 2 ~~~v~sGiqPSG~~HLGnylG~ik~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~ 81 (398)
T PRK12283 2 PDRVLSGMRPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFI 81 (398)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 357999999999999999999999999998 4543 5999999999999999999999999999999
Q ss_pred cCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhh-CCCCCcchhhhhhHHHhhhhhccccceeccccchHHHHHHHHH
Q 015509 143 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA-GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 221 (405)
Q Consensus 143 qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~-~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLtRd 221 (405)
||++|+|++|+|+|+|.+++++|+|++|||++..+. ..++.++|+++||+|||||||+|++|+||||+||+||+|||||
T Consensus 82 QS~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl~~a~iVPVG~DQ~qHleLaRd 161 (398)
T PRK12283 82 QSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTRE 161 (398)
T ss_pred CCCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHhcCCCEeeeccccHHHHHHHHH
Confidence 999999999999999999999999999999987642 1256799999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCcccc----------------------------------------------------------ccCCCCC
Q 015509 222 LAERVNYLYGGRKWK----------------------------------------------------------KLGGRGG 243 (405)
Q Consensus 222 ia~r~n~~~g~~~~~----------------------------------------------------------~~g~~~~ 243 (405)
||+|||+.||.+.+. -..|.++
T Consensus 162 IA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (398)
T PRK12283 162 IARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGK 241 (398)
T ss_pred HHHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccccccccccCC
Confidence 999999999853111 0123455
Q ss_pred ccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHH
Q 015509 244 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQ 323 (405)
Q Consensus 244 ~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~ 323 (405)
.+|+.|+++++. +++|||| || +|||||+ +|+|+|+|+|++|++|||+|+||+.....++ +++|++||+++||+
T Consensus 242 ~~~~~P~~~~~~-~~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~~a~TDs~~~~~~~-~g~Pe~~nl~~i~~ 314 (398)
T PRK12283 242 IILPEPQALLTE-ASKMPGL-DG-QKMSKSY---GNTIGLREDPESVTKKIRTMPTDPARVRRTD-PGDPEKCPVWQLHQ 314 (398)
T ss_pred cccCCCcccccC-CCcccCC-CC-CcCCCCC---CCeeeCcCCHHHHHHHHHhCCCCCcccccCC-CCCCCcCHHHHHHH
Confidence 689999999955 4899999 78 7999996 4799999999999999999999988755544 49999999999999
Q ss_pred hhCCC-CHHHHHHHHh--cCCcchHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 015509 324 LISGK-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAM 400 (405)
Q Consensus 324 ~~t~~-~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~pirer~~e~~~~~~~l~~iL~~Ga~kAr~iA~~tl~~Vr~a~ 400 (405)
++++. +++++.++|+ ++.||+||+.|+|.|+++|+|+||||.++++|+++|++||++|++|||++|++||++||++|
T Consensus 315 ~~~~~~~~~~i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~G~~kA~~~a~~t~~~v~~~~ 394 (398)
T PRK12283 315 VYSDEETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADGCEKARKVARETMRDVREAM 394 (398)
T ss_pred HhCCChHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99877 5899999997 47889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 015509 401 GFL 403 (405)
Q Consensus 401 Gl~ 403 (405)
||.
T Consensus 395 g~~ 397 (398)
T PRK12283 395 GLS 397 (398)
T ss_pred CCC
Confidence 996
No 7
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-86 Score=653.45 Aligned_cols=291 Identities=51% Similarity=0.793 Sum_probs=276.4
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHhc---------------cCCCcCh--HHHHHHHHHHHHHHHHcCCCCCceE
Q 015509 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITLPYDT--QQLSKATRETAAIYLACGIDNSKAS 139 (405)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------------it~~~d~--~~l~~~~~~~~~~~lA~GiDp~k~~ 139 (405)
.+++||||+||||.||||||+|++++|+.+| +|+.+++ +.+++++++++++|||+||||+|++
T Consensus 4 ~~~~vlSG~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~ 83 (314)
T COG0180 4 KKFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKST 83 (314)
T ss_pred CCceEEecCCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccE
Confidence 4789999999999999999999999999998 5667777 8899999999999999999999999
Q ss_pred EEEcCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchHHHHHHH
Q 015509 140 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 219 (405)
Q Consensus 140 if~qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLt 219 (405)
||+||++|+|.||+|+|+|.+++|||+||+|||++..+.+ +++++|+++||+|||||||+|++++||||.||+||+|||
T Consensus 84 if~QS~v~e~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~-~~~~~Gl~~YPvlqAADILl~~a~~VPVG~DQ~qHleLt 162 (314)
T COG0180 84 IFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG-ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLELT 162 (314)
T ss_pred EEEccCchHHHHHHHHHHccCcHHHHHhhcCcchhhhccc-ccccccchhccHHHHHHhhhccCCeeccCCCchHHHHHH
Confidence 9999999999999999999999999999999999987765 689999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhcccC
Q 015509 220 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 299 (405)
Q Consensus 220 Rdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~T 299 (405)
||||+|||+.|| .+|++|+++++.. +++|||+++ +|||||+|| |+|+|+|+|++|++|||+|+|
T Consensus 163 RDiA~rfn~~y~------------~~f~~P~~~~~~~-~~i~gL~g~-~KMSkS~~n--s~I~L~D~~~~i~kKI~~~~t 226 (314)
T COG0180 163 RDIARRFNHLYG------------EVFPLPEALISKV-ARLPGLDGP-GKMSKSDPN--SAIFLLDDPKTIRKKIKKAAT 226 (314)
T ss_pred HHHHHHHHhhcC------------CccCCccccccCC-CcccCCCCC-CcccccCCC--CeeeccCCHHHHHHHHHHhcc
Confidence 999999999999 6799999999987 899999766 899999985 899999999999999999999
Q ss_pred CCCCCcccCCCCCCccchHHHHHHhhC-CCCHHHHHHHHhc--CCcchHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHH
Q 015509 300 DSSAGLEFDNLERPECNNLLSIYQLIS-GKTKGEVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDK 376 (405)
Q Consensus 300 d~~~~i~~~~~~rpev~nll~i~~~~t-~~~~eel~~~y~~--~~~gdlK~~Lae~i~~~L~pirer~~e~~~~~~~l~~ 376 (405)
|+...++++++++||+||+|+||.+|+ +++.++++++|++ ++||+||+.|++.|+++|+|||+||+++.++++|+++
T Consensus 227 d~~~~~~~~~~g~Pe~~~l~~~~~~~~~~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~~~~~~l~~ 306 (314)
T COG0180 227 DGPTLIEYRKGGKPEVCNLFEIYSAFFEDDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDPAYLDD 306 (314)
T ss_pred CCCCccccCCCCCCCcchHHHHHHHhcCCCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 996667777789999999999999999 9999999999985 9999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 015509 377 VLADGAAK 384 (405)
Q Consensus 377 iL~~Ga~k 384 (405)
+|.+|++|
T Consensus 307 il~~g~~k 314 (314)
T COG0180 307 ILRKGAEK 314 (314)
T ss_pred HHhccCCC
Confidence 99999874
No 8
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=8.4e-85 Score=651.03 Aligned_cols=310 Identities=34% Similarity=0.527 Sum_probs=288.7
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHhc--------------cC-CCcChHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 015509 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------IT-LPYDTQQLSKATRETAAIYLACGIDNSKASVFV 142 (405)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ--------------it-~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~ 142 (405)
+.+||||++|||.+|||||+|++.+|++|| +| ...+++.+++++++++++|+||||||+|++||+
T Consensus 2 ~~~v~sG~~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~ 81 (333)
T PRK12282 2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFI 81 (333)
T ss_pred CCEEEEeeCCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence 468999999999999999999999999999 23 257899999999999999999999999999999
Q ss_pred cCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhC-CCCCcchhhhhhHHHhhhhhccccceeccccchHHHHHHHHH
Q 015509 143 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 221 (405)
Q Consensus 143 qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLtRd 221 (405)
||+|++|.++.|+++|.++++||+|+.+||++....+ ++++++|+++||+|||||||+|++|+||||+||+||+|||||
T Consensus 82 qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRd 161 (333)
T PRK12282 82 QSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTRE 161 (333)
T ss_pred CCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHH
Confidence 9999999999999999999999999999998755443 367899999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhcccCCC
Q 015509 222 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 301 (405)
Q Consensus 222 ia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~Td~ 301 (405)
||++||++||+ ++|..|+++++. +++|||| +|.+|||||++ |+|+|+|+||+|++||++|+||+
T Consensus 162 iA~~~n~~~~~-----------~~~~~p~~~~~~-~~~i~~L-~g~~KMSKS~~---~~I~L~D~pe~I~kKI~~A~td~ 225 (333)
T PRK12282 162 IVRRFNSLYGT-----------DVLVEPEALLPE-AGRLPGL-DGKAKMSKSLG---NAIYLSDDADTIKKKVMSMYTDP 225 (333)
T ss_pred HHHHHhhhcCC-----------ccccCchhcccC-CCcccCC-CCCCcCCCCCC---CeeeeeCCHHHHHHHHHhCcCCC
Confidence 99999999985 468889988865 4799999 67789999984 69999999999999999999998
Q ss_pred CCCcccCCCCCCccchHHHHHHhh--CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHH
Q 015509 302 SAGLEFDNLERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 377 (405)
Q Consensus 302 ~~~i~~~~~~rpev~nll~i~~~~--t~~~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~pirer~~e~~~~~~~l~~i 377 (405)
.. +.++++++|++||+++|+++| +++++++++++|. +++++|||+.|+++|+++|+|+|+||+++++|+++|++|
T Consensus 226 ~~-~~~~~~~~~~~~~l~~~~~~f~~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~~~~~~~~v 304 (333)
T PRK12282 226 NH-IRVEDPGKVEGNVVFTYLDAFDPDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAKDPGYVLEI 304 (333)
T ss_pred CC-ccCCCCCCCCcChHHHHHHHhCCCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 54 778899999999999999999 5789999999997 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 015509 378 LADGAAKAADIADATLNNVYQAMGFLR 404 (405)
Q Consensus 378 L~~Ga~kAr~iA~~tl~~Vr~a~Gl~~ 404 (405)
|..|++|||++|++||++||++|||.+
T Consensus 305 l~~G~~ka~~~A~~~~~~v~~~~g~~~ 331 (333)
T PRK12282 305 LKAGSEKAREVAAQTLSEVKDAMGLNY 331 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 999999999999999999999999953
No 9
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=6.6e-83 Score=636.62 Aligned_cols=305 Identities=47% Similarity=0.685 Sum_probs=282.3
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHhc--------------cCCCc--ChHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015509 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPY--DTQQLSKATRETAAIYLACGIDNSKASV 140 (405)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ--------------it~~~--d~~~l~~~~~~~~~~~lA~GiDp~k~~i 140 (405)
+++++|||++|||.+|||||+|+++.|+.+| +|... +++.+++++++++++|+||||||+|++|
T Consensus 1 ~~~~v~~G~~PTG~~HlG~~l~~~~~~~~~q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i 80 (328)
T TIGR00233 1 KKFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFI 80 (328)
T ss_pred CCCEEEEeeCCCcHhHHHHHHHHHHHHHHHhCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEE
Confidence 3679999999999999999999999999888 34344 7889999999999999999999999999
Q ss_pred EEcCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchHHHHHHHH
Q 015509 141 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 220 (405)
Q Consensus 141 f~qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLtR 220 (405)
|+||+|++|++|.|+|+|.+|++||+|+++||++.. . +++++|+|+||+|||||||+|++|+||||+||+||+||||
T Consensus 81 f~qS~~~e~~el~~~l~~~~t~~~l~r~~~~k~k~~--~-~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaR 157 (328)
T TIGR00233 81 FLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQ--A-ENVPIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTR 157 (328)
T ss_pred EEcCCcHHHHHHHHHHHccCCHHHHHhccCcchhcc--C-CCCCchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHH
Confidence 999999999999999999999999999999998752 2 5789999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhcccCC
Q 015509 221 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 300 (405)
Q Consensus 221 dia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~Td 300 (405)
|||+|||++|| .+|++|++++++..++|||| +| +|||||+|+ |+|+|+|+||+|++||++|+||
T Consensus 158 dia~r~n~~~~------------~~f~~P~~l~~~~~~~l~gl-~~-~KMSKS~~~--s~I~L~D~~e~I~~KI~~a~td 221 (328)
T TIGR00233 158 DLAERFNKKFK------------NFFPKPESLISKFFPRLMGL-SG-KKMSKSDPN--SAIFLTDTPKQIKKKIRKAATD 221 (328)
T ss_pred HHHHHhhhhcC------------cccCCChhhhccccCCCCCC-CC-CcCCCCCCC--CeEeecCCHHHHHHHHHhcCCC
Confidence 99999999998 56999999998766789998 55 699999974 8999999999999999999999
Q ss_pred CCCCcccCCCCCCccchHHHHHHhhC-----CCCHHHHHHHHh--cCCcchHHHHHHHHHHHHhhHHHHHHHHHhcCHHH
Q 015509 301 SSAGLEFDNLERPECNNLLSIYQLIS-----GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAY 373 (405)
Q Consensus 301 ~~~~i~~~~~~rpev~nll~i~~~~t-----~~~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~pirer~~e~~~~~~~ 373 (405)
+.+.+.|+++++|+++|++.+|++++ ++++++++++|. +++|++||+.|+++|+++|+|+|+||+++++| +
T Consensus 222 ~~~~~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~~--~ 299 (328)
T TIGR00233 222 GGRVTLFEHREKGGVPNLLVIYQYLSFFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRAEIAEE--I 299 (328)
T ss_pred CCCCcccCcCCCCCCchHHHHHHHhhccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 99888898889999988888888764 346899999996 58999999999999999999999999999987 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 015509 374 LDKVLADGAAKAADIADATLNNVYQAMGF 402 (405)
Q Consensus 374 l~~iL~~Ga~kAr~iA~~tl~~Vr~a~Gl 402 (405)
|+++|..|+++||++|++||++||++|||
T Consensus 300 ~~~~l~~g~~~a~~~a~~~l~~v~~~~g~ 328 (328)
T TIGR00233 300 LDKILEPGAKKARETANKTLADVYKAMGL 328 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999997
No 10
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.7e-70 Score=548.33 Aligned_cols=271 Identities=27% Similarity=0.364 Sum_probs=247.5
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHhc---------------cCC-CcChHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015509 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 140 (405)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------------it~-~~d~~~l~~~~~~~~~~~lA~GiDp~k~~i 140 (405)
+++++|||++|||.||||||++ +.+|+.|| +|. ..+++.+++++++++++|+||||||+|+.|
T Consensus 65 ~~~~iytG~~PSG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i 143 (368)
T PRK12285 65 KPFAVYTGFMPSGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEI 143 (368)
T ss_pred CCeEEEEccCCCCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 4789999999999999999986 67888888 233 578999999999999999999999999999
Q ss_pred EEcCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhc------cccceeccccchHH
Q 015509 141 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL------YQSDFVPVGEDQKQ 214 (405)
Q Consensus 141 f~qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~------~~adlVpvG~DQ~~ 214 (405)
|+||++++|.+++|.++|.+++++|+|+.+|+ +++++|+++||+|||||||+ |++|+||||+||+|
T Consensus 144 ~~qS~~~~~~~l~~~l~~~~t~~~l~r~~~f~--------~~~~~g~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~ 215 (368)
T PRK12285 144 YFQSENIKVYDLAFELAKKVNFSELKAIYGFT--------GETNIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQDP 215 (368)
T ss_pred EECCchHHHHHHHHHHHhhCcHHHHHHhhCCC--------CCCchhhhhhhHHHHHHHHhhcccccCCceEEEeccchHH
Confidence 99999999999999999999999999999986 46799999999999999999 88999999999999
Q ss_pred HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHh
Q 015509 215 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 294 (405)
Q Consensus 215 hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI 294 (405)
|+|||||||+|||++|| |++|.+++++ ++||| +| +|||||+| +|+|+|+|+|++|++||
T Consensus 216 h~~ltRdiA~r~n~~~g--------------f~~P~~l~~~---~lpgL-~G-~KMSkS~~--~s~I~L~D~p~~I~kKI 274 (368)
T PRK12285 216 HIRLTRDIAERLHGGYG--------------FIKPSSTYHK---FMPGL-TG-GKMSSSKP--ESAIYLTDDPETVKKKI 274 (368)
T ss_pred HHHHHHHHHHHHhhhcC--------------CCCchhHhhh---cccCC-CC-CcCCCCCC--CCeeeccCCHHHHHHHH
Confidence 99999999999999998 8999999975 99999 56 69999997 49999999999999999
Q ss_pred hcccCCCCCCcccCC--CCCCccchHHHHHHhhC---CCCHHHHHHHHh--cCCcchHHHHHHHHHHHHhhHHHHHHHHH
Q 015509 295 KRCKTDSSAGLEFDN--LERPECNNLLSIYQLIS---GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEI 367 (405)
Q Consensus 295 ~kA~Td~~~~i~~~~--~~rpev~nll~i~~~~t---~~~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~pirer~~e~ 367 (405)
|+|+||+..+++++. +++|++||+++|+.++. +++++|++++|+ +++||+||+.|++.|+++|+|+|+||+++
T Consensus 275 ~kA~Td~~~t~~~~~~~~g~p~~~~v~~~l~~~~~~~d~~~eei~~~y~~g~~~~g~~K~~lae~i~~~l~~~~er~~~~ 354 (368)
T PRK12285 275 MKALTGGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELKEIYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEA 354 (368)
T ss_pred HhCcCCCCcccccccccCCCCCcchHHHHHHHHhcCCCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999877643 58899999999999885 579999999997 48999999999999999999999999988
Q ss_pred hcCHHHHHHHHHH
Q 015509 368 MSDSAYLDKVLAD 380 (405)
Q Consensus 368 ~~~~~~l~~iL~~ 380 (405)
.. .|++.+..
T Consensus 355 ~~---~~~~~~~~ 364 (368)
T PRK12285 355 RE---ILEKYLYD 364 (368)
T ss_pred HH---HHHHhhcc
Confidence 64 56665543
No 11
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=1e-69 Score=531.34 Aligned_cols=260 Identities=45% Similarity=0.732 Sum_probs=241.9
Q ss_pred eEEEeeCCCCcchhhhHHHHHHHHHHhc---------------cCCCc-ChHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 015509 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITLPY-DTQQLSKATRETAAIYLACGIDNSKASVFVQ 143 (405)
Q Consensus 80 ~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------------it~~~-d~~~l~~~~~~~~~~~lA~GiDp~k~~if~q 143 (405)
++|||++|||.||||||+|++.+|+++| +|... +++.+++++++++++|+|+||||+|++||+|
T Consensus 1 ~i~tG~~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~q 80 (280)
T cd00806 1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQ 80 (280)
T ss_pred CEEEeeCCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEc
Confidence 5899999999999999999999999999 34444 8999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchHHHHHHHHHHH
Q 015509 144 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 223 (405)
Q Consensus 144 S~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLtRdia 223 (405)
|++++|.++.|+|+|.+++++|+|+++||++.+. .+++++|+|+||+|||||||+|++|+||||.||+||+|||||||
T Consensus 81 S~~~~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~--~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia 158 (280)
T cd00806 81 SDVPEHYELAWLLSCVVTFGELERMTGFKDKSAQ--GESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIA 158 (280)
T ss_pred CCcHHHHHHHHHHhCcCCHHHHHhccchhhhhcc--CCCCcchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHH
Confidence 9999999999999999999999999999998653 36889999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhcccCCCCC
Q 015509 224 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 303 (405)
Q Consensus 224 ~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~Td~~~ 303 (405)
+|||++|| .+|++|+++++. +++||||++|++|||||++ +|+|+|+|+|++|++|||+|+||+..
T Consensus 159 ~r~n~~~~------------~~~~~P~~l~~~-~~~i~~l~g~~~KMSKS~~--~~~I~L~d~~~~i~~KI~~a~td~~~ 223 (280)
T cd00806 159 RRFNKLYG------------EIFPKPAALLSK-GAFLPGLQGPSKKMSKSDP--NNAIFLTDSPKEIKKKIMKAATDGGR 223 (280)
T ss_pred HHhccccc------------cccCCCeeeccC-CCccccCCCCCCcccCCCC--CCeEEeeCCHHHHHHHHHhccCCCCC
Confidence 99999998 679999999985 4799999777789999996 48999999999999999999999988
Q ss_pred CcccCCCCCCccchHHHHHHhhCCCCHHHHH--HHHh--cCCcchHHHHHHHHHHHH
Q 015509 304 GLEFDNLERPECNNLLSIYQLISGKTKGEVA--EECQ--NMNWGTFKPLLTDALIEH 356 (405)
Q Consensus 304 ~i~~~~~~rpev~nll~i~~~~t~~~~eel~--~~y~--~~~~gdlK~~Lae~i~~~ 356 (405)
.+.++.+++|+++|+++||+++++.+.++++ ++|+ ++++++||+.|++.|+++
T Consensus 224 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~K~~lae~i~~~ 280 (280)
T cd00806 224 TEHRRDGGGPGVSNLVEIYSAFFNDDDEELEEIDEYRSGGLGYGECKKLLAEAIQEF 280 (280)
T ss_pred ceecCCCCCCCcChHHHHHHHHhCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Confidence 7888999999999999999999988888888 7776 799999999999999864
No 12
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=3e-64 Score=502.96 Aligned_cols=254 Identities=26% Similarity=0.362 Sum_probs=225.0
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHhc---------------cCC-CcChHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015509 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 140 (405)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------------it~-~~d~~~l~~~~~~~~~~~lA~GiDp~k~~i 140 (405)
+++++|||++|||.+||||++ ++.+|+++| ++. +.+++.+++++++++++|+|+|+||+|+.|
T Consensus 29 ~~~~v~~G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~i 107 (329)
T PRK08560 29 EEPKAYIGFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTEF 107 (329)
T ss_pred CCCEEEEccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheEE
Confidence 578999999999999999987 567899999 233 368999999999999999999999999999
Q ss_pred EEcCCchhhhH---HHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchHHHHH
Q 015509 141 FVQSHVRAHVE---LMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 217 (405)
Q Consensus 141 f~qS~v~~h~e---l~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hle 217 (405)
|+||+|++|.+ +.|.|+|.+++++|+|+.+++.+ . . ++.++|+|+||+|||||||+|++|+||||.||+||++
T Consensus 108 ~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~--~-~-~~~~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~~ 183 (329)
T PRK08560 108 VLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGR--R-M-EEPDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIHM 183 (329)
T ss_pred EecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcc--c-C-CCCCHHHHHHHHHHHHHHHHhCCCEEEechhHHHHHH
Confidence 99999998875 44449999999999999998753 1 1 3459999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhcc
Q 015509 218 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 297 (405)
Q Consensus 218 LtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA 297 (405)
||||||++|| +.+|.+++.+ +||||+++++|||||+| +|+|+|+|+|++|++|||+|
T Consensus 184 l~Rdia~~~n------------------~~~p~~l~~~---~l~~L~g~~~KMSKS~p--~~~I~L~D~~~~I~~KI~kA 240 (329)
T PRK08560 184 LAREVLPKLG------------------YKKPVCIHTP---LLTGLDGGGIKMSKSKP--GSAIFVHDSPEEIRRKIKKA 240 (329)
T ss_pred HHHHhhHhcC------------------CCCceEEEcC---ccCCCCCCCCCCcCCCC--CCeecccCCHHHHHHHHHhc
Confidence 9999999998 3568877754 99999666669999996 59999999999999999999
Q ss_pred cCCCCCCcccCCCCCCccchHHHHHHhhCC--------------------CCHHHHHHHHh--cCCcchHHHHHHHHHHH
Q 015509 298 KTDSSAGLEFDNLERPECNNLLSIYQLISG--------------------KTKGEVAEECQ--NMNWGTFKPLLTDALIE 355 (405)
Q Consensus 298 ~Td~~~~i~~~~~~rpev~nll~i~~~~t~--------------------~~~eel~~~y~--~~~~gdlK~~Lae~i~~ 355 (405)
+||+ +.|+.||+++|++++.. +++++++++|. .++|++||+.|+++|++
T Consensus 241 ~t~~---------~~~~~n~v~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~ 311 (329)
T PRK08560 241 YCPP---------GEVEGNPVLEIAKYHIFPRYDPFVIERPEKYGGDLEYESYEELERDYAEGKLHPMDLKNAVAEYLIE 311 (329)
T ss_pred cCCC---------CCcCCCcHHHHHHHHhhccccceEEechhhcCCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9964 45889999999998752 58999999997 47999999999999999
Q ss_pred HhhHHHHHHHHH
Q 015509 356 HLHPIQVRYEEI 367 (405)
Q Consensus 356 ~L~pirer~~e~ 367 (405)
+|+|||++|++-
T Consensus 312 ~l~pir~~~~~~ 323 (329)
T PRK08560 312 ILEPVREYLEEG 323 (329)
T ss_pred HHHHHHHHHhCC
Confidence 999999999853
No 13
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.6e-64 Score=507.96 Aligned_cols=257 Identities=23% Similarity=0.335 Sum_probs=223.3
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHhc---------------cCC-C--cChHHHHHHHHHHHHHHHHcCCCCCc
Q 015509 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITL-P--YDTQQLSKATRETAAIYLACGIDNSK 137 (405)
Q Consensus 76 ~~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------------it~-~--~d~~~l~~~~~~~~~~~lA~GiDp~k 137 (405)
.++++||+||+|||.+||||++..+.+|++|| ++. + ++++.+++.+++++++|+|+|+||+|
T Consensus 64 ~~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp~k 143 (383)
T PTZ00126 64 KERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMDN 143 (383)
T ss_pred CCCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 35789999999999999999543234889998 222 2 68899999999999999999999999
Q ss_pred eEEEEcCC-chhhhHHHHHHhcc----ccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccch
Q 015509 138 ASVFVQSH-VRAHVELMWLLSSA----TPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 212 (405)
Q Consensus 138 ~~if~qS~-v~~h~el~w~L~~~----~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ 212 (405)
+.||+||+ +++|.+++|.+.+. +++++|+|+.+++++.. .++.++|+|+||+|||||||+|++|+||||.||
T Consensus 144 ~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~---~~~~~~g~l~YP~LQaaDil~l~adivpvG~DQ 220 (383)
T PTZ00126 144 VRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSE---GDEQPCAQILYPCMQCADIFYLKADICQLGMDQ 220 (383)
T ss_pred eEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhcccc---CCCCCchhhhhhHHHhhhhhccCCCEEEeCccH
Confidence 99999998 78999999998875 59999999999986532 256799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHH
Q 015509 213 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 292 (405)
Q Consensus 213 ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~k 292 (405)
+||++||||+|++||+. ++|..++. ++||||+||++|||||+| +++|+|+|+|++|++
T Consensus 221 ~~~~~LaRdia~~~~~~-----------------~~~~~~~~---~~lpgL~dg~~KMSKS~~--ns~I~L~Dspe~I~k 278 (383)
T PTZ00126 221 RKVNMLAREYCDKKKIK-----------------KKPIILSH---HMLPGLLEGQEKMSKSDP--NSAIFMEDSEEDVNR 278 (383)
T ss_pred HHHHHHHHHHHHHhCCC-----------------CCceeecc---cccccCCCCCCCCCcCCC--CCeecCCCCHHHHHH
Confidence 99999999999999852 34555433 599999888899999997 489999999999999
Q ss_pred HhhcccCCCCCCcccCCCCCCccchHHHHHHhhC--------------------CCCHHHHHHHHh--cCCcchHHHHHH
Q 015509 293 KIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS--------------------GKTKGEVAEECQ--NMNWGTFKPLLT 350 (405)
Q Consensus 293 KI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~t--------------------~~~~eel~~~y~--~~~~gdlK~~La 350 (405)
|||+|+||+ +.++.||+++|++++. +.++++++++|. .++|++||++|+
T Consensus 279 KI~kA~t~p---------~~~~~npv~~~~~~~~~~~~~~~~I~r~~k~gg~~~~~~~eel~~~y~~g~l~p~dlK~~la 349 (383)
T PTZ00126 279 KIKKAYCPP---------GVIEGNPILAYFKSIVFPAFNSFTVLRKEKNGGDVTYTTYEELEKDYLSGALHPGDLKPALA 349 (383)
T ss_pred HHHhCcCCC---------CCCCCCcchhhhhhcccccccceeEeccccccCccCcCCHHHHHHHHhcCCCCHHHHHHHHH
Confidence 999999964 4577888999998742 358999999997 589999999999
Q ss_pred HHHHHHhhHHHHHHHH
Q 015509 351 DALIEHLHPIQVRYEE 366 (405)
Q Consensus 351 e~i~~~L~pirer~~e 366 (405)
++|+++|+|||++|+.
T Consensus 350 e~i~~~L~PIRe~~~~ 365 (383)
T PTZ00126 350 KYLNLMLQPVRDHFQN 365 (383)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999999874
No 14
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4e-60 Score=506.39 Aligned_cols=267 Identities=22% Similarity=0.331 Sum_probs=230.4
Q ss_pred CCceEEEeeCCCCcchhhh-HHHHHHHHHHhc--------------cCC---CcChHHHHHHHHHHHHHHHHcCCCCCce
Q 015509 77 VKKRIVSGVQPTGSIHLGN-YLGAIKNWIALQ--------------ITL---PYDTQQLSKATRETAAIYLACGIDNSKA 138 (405)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGn-ylg~i~~~~~lQ--------------it~---~~d~~~l~~~~~~~~~~~lA~GiDp~k~ 138 (405)
+++++||||+|||+||||| ++++++.|..+| +|. +.+++.++.++++++++|+|+||||+|+
T Consensus 31 ~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK~ 110 (682)
T PTZ00348 31 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKV 110 (682)
T ss_pred CCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 3579999999999999999 467777787666 232 2478888888899999999999999999
Q ss_pred EEEEcCC-chhhhHHHHHHhccccHHHHhhhhcHHHHhHhhC--CCCCcchhhhhhHHHhhhhhccccceeccccchHHH
Q 015509 139 SVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG--GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 215 (405)
Q Consensus 139 ~if~qS~-v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~--~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~h 215 (405)
+||+||+ +++|++++|.+ .++++++.++.++|++....+ .+++++|+++||+|||||||+|++|+||||.||+||
T Consensus 111 ~~~~qSd~i~e~~el~w~l--v~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAADIl~l~adivpvG~DQ~qh 188 (682)
T PTZ00348 111 LFLWSSEEITNHANTYWRT--VLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCADIFFLKADICQLGLDQRKV 188 (682)
T ss_pred EEEECcHhhhhhhHHHHHH--HHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhhcccccCCCEEEeCccHHHH
Confidence 9999997 89999999999 588999999999998643222 235899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhh
Q 015509 216 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 295 (405)
Q Consensus 216 leLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 295 (405)
+||||++|++||+. ++|..+.. ++||||++|++|||||+| +|+|+|+|+|++|++|||
T Consensus 189 ~eLaRdia~~~g~~-----------------~kpvil~~---~~LpGL~gg~~KMSKS~p--~naI~L~Dspe~I~kKI~ 246 (682)
T PTZ00348 189 NMLAREYCDLIGRK-----------------LKPVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTEEDVARKIR 246 (682)
T ss_pred HHHHHHHHHHhCCC-----------------CCceeccc---ccCcCCCCCCCcCCCCCC--CCeecccCCHHHHHHHHH
Confidence 99999999998742 23543333 599999877789999997 499999999999999999
Q ss_pred cccCCCCC--CcccCCCCCC----ccchHHHHHHhhCC--------------CCHHHHHHHHh--cCCcchHHHHHHHHH
Q 015509 296 RCKTDSSA--GLEFDNLERP----ECNNLLSIYQLISG--------------KTKGEVAEECQ--NMNWGTFKPLLTDAL 353 (405)
Q Consensus 296 kA~Td~~~--~i~~~~~~rp----ev~nll~i~~~~t~--------------~~~eel~~~y~--~~~~gdlK~~Lae~i 353 (405)
+|+||+.+ .++..++++| +.||+|+||+++.+ +++++++++|. +++|+|||++|+++|
T Consensus 247 kA~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~~~~i~~~~~~~~eele~~y~~g~l~~~dlK~~lae~l 326 (682)
T PTZ00348 247 QAYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGAVATIDGTTYATYEDLEQAFVSDEVSEEALKSCLIDEV 326 (682)
T ss_pred hCCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccchhcccCCcccCcHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999863 4566778888 88999999998732 68999999997 589999999999999
Q ss_pred HHHhhHHHHHHHHH
Q 015509 354 IEHLHPIQVRYEEI 367 (405)
Q Consensus 354 ~~~L~pirer~~e~ 367 (405)
+++|+|||++|++-
T Consensus 327 ~~~L~PIRe~~~~~ 340 (682)
T PTZ00348 327 NALLEPVRQHFASN 340 (682)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999754
No 15
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.4e-58 Score=465.70 Aligned_cols=263 Identities=19% Similarity=0.266 Sum_probs=223.2
Q ss_pred CCCceEEEeeCCCCc-chhhhHHHHH-HHHHHhc--------cCC-------CcChHHHHHHHHHHHHHHHHcCCCCCce
Q 015509 76 SVKKRIVSGVQPTGS-IHLGNYLGAI-KNWIALQ--------ITL-------PYDTQQLSKATRETAAIYLACGIDNSKA 138 (405)
Q Consensus 76 ~~~~~i~sGi~PTG~-lHLGnylg~i-~~~~~lQ--------it~-------~~d~~~l~~~~~~~~~~~lA~GiDp~k~ 138 (405)
.+++++|+|++|||. |||||+++++ .+|++-. +|- ..+.+.+++++++++++|+|+||||+|+
T Consensus 71 ~~~~~vYtG~~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt 150 (383)
T PLN02486 71 GEKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERT 150 (383)
T ss_pred CCCeEEEeCCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcce
Confidence 347899999999995 9999999987 6674421 221 3578889999999999999999999999
Q ss_pred EEEEcCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhC-CCCCcchhhhhhHHHhhhhh------cccc-----cee
Q 015509 139 SVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL------LYQS-----DFV 206 (405)
Q Consensus 139 ~if~qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl------~~~a-----dlV 206 (405)
+||.|+++ +.+++|.... ++.|+.+++++.+.+| +++.++|+++||+||||||| ++.. |+|
T Consensus 151 ~I~s~~~~--~~~~~~~~~~-----~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lV 223 (383)
T PLN02486 151 FIFSDFDY--VGGAFYKNMV-----KIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLI 223 (383)
T ss_pred EEEeccHH--HhHhHHHHHH-----HHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCccee
Confidence 99966655 5455554332 5668888888877665 45679999999999999998 4554 999
Q ss_pred ccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCC
Q 015509 207 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 286 (405)
Q Consensus 207 pvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Ds 286 (405)
|||+||+||++||||||+||| +.+|..+++ +++|+|+++.+|||||+| +|+|+|+|+
T Consensus 224 PvG~DQd~~~~ltRdia~r~~------------------~~kp~~~~~---~~lp~L~g~~~KMSkS~~--nsaI~L~D~ 280 (383)
T PLN02486 224 PCAIDQDPYFRMTRDVAPRLG------------------YYKPALIES---RFFPALQGESGKMSASDP--NSAIYVTDT 280 (383)
T ss_pred ecccchHHHHHHHHHHHHHhC------------------CCCcceecc---ccccCCCCCCCcCcCcCC--CCeeeccCC
Confidence 999999999999999999998 356877664 499999776689999997 489999999
Q ss_pred HHHHHHHhhc-ccCCCCCCcccC--CCCCCccchHHHHHHhhC--CCCHHHHHHHHh--cCCcchHHHHHHHHHHHHhhH
Q 015509 287 KDVIANKIKR-CKTDSSAGLEFD--NLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHP 359 (405)
Q Consensus 287 pe~I~kKI~k-A~Td~~~~i~~~--~~~rpev~nll~i~~~~t--~~~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~p 359 (405)
|++|++||++ |+||+..+++++ .+++|+++++|+||.+|. ++++||++++|+ ++++++||+.|++.|+++|+|
T Consensus 281 p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~f~~dd~~~eei~~~y~~G~l~~ge~K~~lae~i~~~l~~ 360 (383)
T PLN02486 281 PKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFLEDDAELERIKKEYGSGRMLTGEVKKRLIEVLTEIVER 360 (383)
T ss_pred HHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHHHHcCCchHHHHHHHHhccCCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999887653 468999999999999996 468999999996 589999999999999999999
Q ss_pred HHHHHHHHh
Q 015509 360 IQVRYEEIM 368 (405)
Q Consensus 360 irer~~e~~ 368 (405)
+|+|++++.
T Consensus 361 ~qerr~~~~ 369 (383)
T PLN02486 361 HQRARAAVT 369 (383)
T ss_pred HHHHHHHHH
Confidence 999999875
No 16
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=9.7e-56 Score=434.19 Aligned_cols=261 Identities=35% Similarity=0.520 Sum_probs=228.1
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHhc---------------cCC---CcChHHHHHHHHHHHHH--HHHcCCCCC
Q 015509 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITL---PYDTQQLSKATRETAAI--YLACGIDNS 136 (405)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------------it~---~~d~~~l~~~~~~~~~~--~lA~GiDp~ 136 (405)
+++++|+||+|||.|||||++ .+.+|++|| ++. .++++.++.++.+++.+ |+|+|+||+
T Consensus 4 ~~~~~y~G~~PTg~lHlG~l~-~~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~ 82 (292)
T PF00579_consen 4 KPFRVYTGIDPTGDLHLGHLV-PIMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPE 82 (292)
T ss_dssp SSEEEEEEEESSSS-BHHHHH-HHHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTT
T ss_pred CCcEEEEeECCCCcccchHHH-HHHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 578999999999999999655 567999998 111 24688899999999999 999999999
Q ss_pred ceEEEEcCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhC-CCCCcchhhhhhHHHhhhhhccccceeccccchHHH
Q 015509 137 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 215 (405)
Q Consensus 137 k~~if~qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~h 215 (405)
|+.||+||+|+++.++.|.+.+.++.++++|+.+++++..+.+ ++++++|+|+||+||||||+++++|+||||.||++|
T Consensus 83 k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~~~ 162 (292)
T PF00579_consen 83 KTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVPGGIDQRGH 162 (292)
T ss_dssp TEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEEEEGGGHHH
T ss_pred ceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeeccccccccchHHHH
Confidence 9999999999999999999999999999999999998655554 358899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhh
Q 015509 216 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 295 (405)
Q Consensus 216 leLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 295 (405)
++++|++|+|||.+. .|++|.+++++ ++|+| +|.+|||||+++ ++|+|+|++++|++||+
T Consensus 163 ~~l~rd~a~k~~~~~--------------~~~~p~~l~~~---~l~~l-~G~~KMSKS~~n--s~I~L~d~~~~i~~Ki~ 222 (292)
T PF00579_consen 163 IELARDLARKFNYKE--------------IFPKPAGLTSP---LLPGL-DGQKKMSKSDPN--SAIFLDDSPEEIRKKIK 222 (292)
T ss_dssp HHHHHHHHHHHTHHS--------------TSSS-EEEEET---CBBST-TSSSBTTTTTTG--GS-BTTTTHHHHHHHHH
T ss_pred HHHHHHHHhhhcccc--------------cccCchheeec---ccccc-CCccccCccCCc--cEEEEeccchhHHHHHH
Confidence 999999999999762 38899999986 89998 787799999975 89999999999999999
Q ss_pred cccCCCCCCcccCCCCCCccch-HHHHHHhhCC----CCHHHHHHHHh--cCCcchHHHHHHHHHHHHhh
Q 015509 296 RCKTDSSAGLEFDNLERPECNN-LLSIYQLISG----KTKGEVAEECQ--NMNWGTFKPLLTDALIEHLH 358 (405)
Q Consensus 296 kA~Td~~~~i~~~~~~rpev~n-ll~i~~~~t~----~~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~ 358 (405)
+|+|++...+......+|.+++ +++++..+.+ .+++++.++|. .+|++++|++++++++++|+
T Consensus 223 ~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le 292 (292)
T PF00579_consen 223 KAFCDPDRENPRLLKGRPFISPFLIERLEAFHGNDDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE 292 (292)
T ss_dssp HSHTSTTSHHHHHHHHHHTHHHHHHHHHHHHHHHHHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCcccccccccCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence 9999998865555557788888 8888887753 35799999997 47999999999999999985
No 17
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=4.8e-54 Score=419.41 Aligned_cols=234 Identities=26% Similarity=0.402 Sum_probs=206.0
Q ss_pred eEEEeeCCCC-cchhhhHHHHHHHHHHhc---------------cCCCc----------ChHHHHHHHHHHHHHHHHcCC
Q 015509 80 RIVSGVQPTG-SIHLGNYLGAIKNWIALQ---------------ITLPY----------DTQQLSKATRETAAIYLACGI 133 (405)
Q Consensus 80 ~i~sGi~PTG-~lHLGnylg~i~~~~~lQ---------------it~~~----------d~~~l~~~~~~~~~~~lA~Gi 133 (405)
.+|+||+||| .+|||||+| +.+|+++| ++... +++.+++++.++++.|+|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3899999999 699999999 78999998 12111 678899999999999999999
Q ss_pred C--CCceEEEEcCCch---hhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhcccc----c
Q 015509 134 D--NSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS----D 204 (405)
Q Consensus 134 D--p~k~~if~qS~v~---~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~a----d 204 (405)
| |+|+.||.||+|+ +|.++.|.+++.+++++|.|+.+||++. . +++++|+|+||+|||||||++++ |
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~---~-~~~~~~~~~Yp~lQaaD~l~l~~~~~~~ 155 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRS---E-EGISATEFTYPPLQAADFLLLNTTEGCD 155 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHh---c-CCCCchhhhhHHHHHHHHHHHhcccCCc
Confidence 9 9999999999999 8999999999999999999999999865 2 56899999999999999999988 9
Q ss_pred eeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecC
Q 015509 205 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 284 (405)
Q Consensus 205 lVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~ 284 (405)
+||||.||++|++++||+|+|||. |+.|.+++.+ +|||| +|. |||||+++.-..|+++
T Consensus 156 ~vp~G~DQ~~~i~l~rdla~r~n~-----------------~~~p~~l~~p---~l~~l-~G~-KMSKS~~~~i~l~~~~ 213 (273)
T cd00395 156 IQPGGSDQWGNITLGRELARRFNG-----------------FTIAEGLTIP---LVTKL-DGP-KFGKSESGPKWLDTEK 213 (273)
T ss_pred EEEecHHHHHHHHHHHHHHHHhCC-----------------CCCCeEEeec---cccCC-CCC-cCCCCCCCCccccccC
Confidence 999999999999999999999982 6779888875 99999 674 9999987522335679
Q ss_pred CCHHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHHhhCCCCHHHHHH----HHhcCCcchHHHHHHHHHHHH
Q 015509 285 DPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAE----ECQNMNWGTFKPLLTDALIEH 356 (405)
Q Consensus 285 Dspe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~t~~~~eel~~----~y~~~~~gdlK~~Lae~i~~~ 356 (405)
|+|++|++||++|+ .++++.|+++|++.+.+||++ .|++.+++++|+.||+.|+++
T Consensus 214 dsp~~i~~ki~~a~----------------d~~v~~~~~~~t~~~~~ei~~i~~~~~~~~~~~~~K~~La~~i~~~ 273 (273)
T cd00395 214 TSPYEFYQFWINAV----------------DSDVINILKYFTFLSKEEIERLEQEQYEAPGYRVAQKTLAEEVTKT 273 (273)
T ss_pred CCHHHHHHHHHccc----------------HhHHHHHHHHHcCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 99999999999997 367899999999888888877 555678899999999999863
No 18
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=2e-54 Score=421.26 Aligned_cols=236 Identities=22% Similarity=0.263 Sum_probs=205.2
Q ss_pred ceEEEeeCCCC-cchhhhHHHHHHHHHHhc---------------cC-CC---------cChHHHHHHHHHHHHHHHHcC
Q 015509 79 KRIVSGVQPTG-SIHLGNYLGAIKNWIALQ---------------IT-LP---------YDTQQLSKATRETAAIYLACG 132 (405)
Q Consensus 79 ~~i~sGi~PTG-~lHLGnylg~i~~~~~lQ---------------it-~~---------~d~~~l~~~~~~~~~~~lA~G 132 (405)
.++|+||+||| .+|||||++++ +|+++| ++ .+ .+++.+++++++++++|+|+|
T Consensus 1 ~~iy~G~~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g 79 (269)
T cd00805 1 LKVYIGFDPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAIL 79 (269)
T ss_pred CeEEEeeCCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 37999999999 79999999864 898898 11 13 578899999999999999999
Q ss_pred CC--CCceEEEEcCCchhhhHHHHH----HhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhcccccee
Q 015509 133 ID--NSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 206 (405)
Q Consensus 133 iD--p~k~~if~qS~v~~h~el~w~----L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlV 206 (405)
+| |+|++||+||+|++| ++|+ +++.+++++|.|+.+|+++... .+++++|+|+||+||||||+++++|+|
T Consensus 80 ~~~~p~k~~i~~~s~~~~~--l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~--~~~~~~~~~~YP~lQaaDi~~l~~~l~ 155 (269)
T cd00805 80 DFIPPEKAKFVNNSDWLLS--LYTLDFLRLGKHFTVNRMLRRDAVKVRLEE--EEGISFSEFIYPLLQAYDFVYLDVDLQ 155 (269)
T ss_pred ccCCCcceEEEEchHhhcc--CCHHHHHHHHhhCcHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHhhHHHHhCCee
Confidence 97 999999999999998 7777 9999999999999999987532 267899999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCC
Q 015509 207 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 286 (405)
Q Consensus 207 pvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Ds 286 (405)
|||.||++|++++||+|+|||. ..|..+.. ++||+| +| +|||||+++.-+ |++.|+
T Consensus 156 ~~G~DQ~~~i~~~rd~a~r~~~------------------~~~~~l~~---~ll~~l-~G-~KMSKS~~~~~~-i~l~ds 211 (269)
T cd00805 156 LGGSDQRGNITLGRDLIRKLGY------------------KKVVGLTT---PLLTGL-DG-GKMSKSEGNAIW-DPVLDS 211 (269)
T ss_pred EecHHHHHHHHHHHHHHHHhCC------------------CCcEEEee---ccccCC-CC-CcccCCCCCccc-ccCCCC
Confidence 9999999999999999999973 33545544 489999 67 499999975222 799999
Q ss_pred HHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHHhhCCCCHHHHHHHHh-cCCcchHHHHHHHHHHHH
Q 015509 287 KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEH 356 (405)
Q Consensus 287 pe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~-~~~~gdlK~~Lae~i~~~ 356 (405)
|++|++||++|+|| ++.+++.++.++++++++|++++|. +-.++++|+.|+++|+++
T Consensus 212 p~~i~~Ki~~a~~~-------------~v~~~l~~~~~~~~~~~eel~~~~~~~~~~~~~K~~la~~i~~l 269 (269)
T cd00805 212 PYDVYQKIRNAFDP-------------DVLEFLKLFTFLDYEEIEELEEEHAEGPLPRDAKKALAEELTKL 269 (269)
T ss_pred HHHHHHHHHcCCcH-------------HHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 99999999999995 5678888888888899999999998 333999999999999863
No 19
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.2e-46 Score=383.71 Aligned_cols=243 Identities=21% Similarity=0.235 Sum_probs=202.6
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHhc------------cC-CCcCh------------HHHHHHHHHHHHHHHH
Q 015509 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQ------------IT-LPYDT------------QQLSKATRETAAIYLA 130 (405)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ------------it-~~~d~------------~~l~~~~~~~~~~~lA 130 (405)
+++++|+||+|||. ||||||++ +.+|++|| .| ..+|| +.+++++.++ ...+|
T Consensus 32 ~~~~vy~G~dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i-~~ql~ 109 (408)
T PRK05912 32 EPLRIYLGFDPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETI-KEQLF 109 (408)
T ss_pred CCCEEEEeecCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHH-HHHHH
Confidence 46899999999995 99999996 67999998 11 12343 3466666544 45569
Q ss_pred cCCCCCc--eEEEEcCCchhhhHHHHHHh---ccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhcc----
Q 015509 131 CGIDNSK--ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 201 (405)
Q Consensus 131 ~GiDp~k--~~if~qS~v~~h~el~w~L~---~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~---- 201 (405)
+||||++ ++||+||+|+++.++.|+|. +.+++++|.++.+||++... ++++++|+|+||+|||||++++
T Consensus 110 ~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~--~~~is~~ef~Yp~LQa~D~l~l~~~~ 187 (408)
T PRK05912 110 KFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLRE--GQGISFTEFLYPLLQGYDFVALNKRY 187 (408)
T ss_pred HhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhcc--CCCCchhhhhhHHHHHhhHHHHhccC
Confidence 9999999 99999999999999999877 78999999888888865421 2578999999999999999999
Q ss_pred ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCcee
Q 015509 202 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 281 (405)
Q Consensus 202 ~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 281 (405)
++|++|||.||++|++++||+|+|||.. .+..+.. |+|+++ +| +|||||+ +|+|
T Consensus 188 ~~~i~~gG~DQ~~ni~~grdla~r~~~~------------------~~~~l~~---plL~~~-~G-~KMsKS~---~naI 241 (408)
T PRK05912 188 GCDLQLGGSDQWGNILSGRDLQRRYGGK------------------PQFGLTM---PLLTGL-DG-KKMGKSE---GNAV 241 (408)
T ss_pred CCCEEeccHHHHHHHHHHHHHHHHhCCC------------------CeEEEec---CCcCCC-CC-CcccCCC---CCce
Confidence 9999999999999999999999999831 1223332 589998 77 7999997 5899
Q ss_pred ecCC---CHHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHHhhCCCCHHHHHHHHh-cCCcchHHHHHHHHHHHHh
Q 015509 282 NLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEHL 357 (405)
Q Consensus 282 ~L~D---spe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~-~~~~gdlK~~Lae~i~~~L 357 (405)
+|+| +|+++++||+++ + ++++.+++.+|.+++.+++++++++|. +.+++++|+.||+.|++++
T Consensus 242 ~L~d~~tsp~~i~qki~~~-~------------D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~~~~~Kk~LA~~v~~~l 308 (408)
T PRK05912 242 WLDEEKTSPYEMYQKWMNI-S------------DADVWRYLKLLTFLSLEEIEELEEELAEGPNPREAKKVLAEEITALV 308 (408)
T ss_pred eCCCCCCCHHHHHHHHhcC-C------------hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 9999 999999999996 2 345777888888778889999999995 5699999999999999999
Q ss_pred hHHHH
Q 015509 358 HPIQV 362 (405)
Q Consensus 358 ~pire 362 (405)
+...+
T Consensus 309 hg~~~ 313 (408)
T PRK05912 309 HGEEA 313 (408)
T ss_pred CCHHH
Confidence 98654
No 20
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.9e-44 Score=365.71 Aligned_cols=245 Identities=18% Similarity=0.195 Sum_probs=197.4
Q ss_pred CCCceEEEeeCCCCc-chhhhHHHHHHHHHHhc------------cC-CCcCh------------HHHHHHHHHHHHHHH
Q 015509 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQ------------IT-LPYDT------------QQLSKATRETAAIYL 129 (405)
Q Consensus 76 ~~~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ------------it-~~~d~------------~~l~~~~~~~~~~~l 129 (405)
.+++++|+||+|||. +||||+++ +.+|.++| .| ..+|| +.+++++..+.+.+.
T Consensus 31 ~~~~~iy~G~dPT~~sLHlGhlv~-l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~~ 109 (410)
T PRK13354 31 GKPLTLYLGFDPTAPSLHIGHLVP-LMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYTEQIF 109 (410)
T ss_pred CCCcEEEEcccCCCCCcchhhHHH-HHHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHHHHHH
Confidence 357899999999995 99999887 55788888 12 23454 468888887777766
Q ss_pred HcCCCCCceEEEEcCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhC-CCCCcchhhhhhHHHhhhhhcc----ccc
Q 015509 130 ACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY----QSD 204 (405)
Q Consensus 130 A~GiDp~k~~if~qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~----~ad 204 (405)
+ ||||+|++||+||+|+++.++.|+|.++.....++||.++++...+.. ++++++++|+||+|||+|++++ ++|
T Consensus 110 ~-~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~~ef~YpllQa~D~~~l~~~~~~~ 188 (410)
T PRK13354 110 K-LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGISFTEFFYPLLQAYDFVHLNRKEDVD 188 (410)
T ss_pred H-hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCCchhhhccHHHHhhhHHHHhccCCCC
Confidence 6 999999999999999998888888766555555667777666544442 3568999999999999999999 999
Q ss_pred eeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecC
Q 015509 205 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 284 (405)
Q Consensus 205 lVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~ 284 (405)
++|||.||++|++++||+|+|+|.. .|..+.. |+|+++ +|+ |||||. +|+|+|+
T Consensus 189 iq~gG~DQ~~ni~~grdl~~r~~~~------------------~~~~lt~---PlL~g~-dG~-KMsKS~---~naI~L~ 242 (410)
T PRK13354 189 LQIGGTDQWGNILMGRDLQRKLEGE------------------EQFGLTM---PLLEGA-DGT-KMGKSA---GGAIWLD 242 (410)
T ss_pred EEEecHHHHHHHHHHHHHHHHhCCC------------------CceEecc---CCccCC-CCC-ccCCCC---CCceecc
Confidence 9999999999999999999999843 2434433 589998 786 999996 4799999
Q ss_pred CC---HHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHHhhC---CCCHHHHHHHHhc-CCcchHHHHHHHHHHHHh
Q 015509 285 DP---KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS---GKTKGEVAEECQN-MNWGTFKPLLTDALIEHL 357 (405)
Q Consensus 285 Ds---pe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~t---~~~~eel~~~y~~-~~~gdlK~~Lae~i~~~L 357 (405)
|+ |+++++||+++ + + ++++.|+++|+ .+++++++++|.. .+++++|+.||+.|++++
T Consensus 243 d~~tsp~~i~qki~~~-~--------------D-~~v~~~l~~~t~l~~~ei~~l~~~~~~~~~~~~~Kk~LA~~v~~~v 306 (410)
T PRK13354 243 PEKTSPYEFYQFWMNI-D--------------D-RDVVKYLKLFTDLSPDEIDELEAQLETEPNPRDAKKVLAEEITKFV 306 (410)
T ss_pred CCCCCHHHHHHHHHcC-C--------------h-HHHHHHHHHHhCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 99 99999999986 1 1 34577777775 5688899999984 569999999999999999
Q ss_pred hHHHHHH
Q 015509 358 HPIQVRY 364 (405)
Q Consensus 358 ~pirer~ 364 (405)
++.++..
T Consensus 307 hg~~~~~ 313 (410)
T PRK13354 307 HGEEAAE 313 (410)
T ss_pred CCHHHHH
Confidence 9976533
No 21
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-44 Score=342.61 Aligned_cols=265 Identities=22% Similarity=0.309 Sum_probs=223.6
Q ss_pred CCCceEEEeeCCC-CcchhhhHHHHH-HHHHHhc------cCCCcC---------hHHHHHHHHHHHHHHHHcCCCCCce
Q 015509 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQ------ITLPYD---------TQQLSKATRETAAIYLACGIDNSKA 138 (405)
Q Consensus 76 ~~~~~i~sGi~PT-G~lHLGnylg~i-~~~~~lQ------it~~~d---------~~~l~~~~~~~~~~~lA~GiDp~k~ 138 (405)
.+|+++|||..|| +.|||||.+++| .+|.+-- |.+.+| .++..+.+++|+.+++|+||||.|+
T Consensus 83 ~kpFyLYTGRGpSS~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kT 162 (397)
T KOG2145|consen 83 GKPFYLYTGRGPSSESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKT 162 (397)
T ss_pred CCceEEEeCCCCCccccccccchhHHHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcce
Confidence 3479999999999 459999999998 9994321 333333 3456778899999999999999999
Q ss_pred EEEEcCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhC-CCCCcchhhhhhHHHhhhhhccc-----------ccee
Q 015509 139 SVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQ-----------SDFV 206 (405)
Q Consensus 139 ~if~qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~~-----------adlV 206 (405)
.||.+.++..-.-. .-++-++.++.++++....+| +++.++|++.+|..|||..+... +|++
T Consensus 163 fIFsn~~y~g~~~f------y~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CLi 236 (397)
T KOG2145|consen 163 FIFSNLDYMGGPAF------YENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCLI 236 (397)
T ss_pred EEEechhhccCcHH------HHHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCceec
Confidence 99999997531000 112334457777776666666 57789999999999999998741 7999
Q ss_pred ccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCC
Q 015509 207 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 286 (405)
Q Consensus 207 pvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Ds 286 (405)
|+.+||+++++||||+|+|++ +++|..+++. ++|.|++.+.|||.|+|| |+|||+|+
T Consensus 237 PcAiDQDPyFRmtRDvA~rlg------------------~~Kpali~st---ffpaLqG~~~KMSASdpn--s~Ifltdt 293 (397)
T KOG2145|consen 237 PCAIDQDPYFRMTRDVAPRLG------------------YPKPALIHST---FFPALQGAQTKMSASDPN--SAIFLTDT 293 (397)
T ss_pred eeeccCChHHHhhhhhhhhhC------------------CCCcceeehh---hchhhhCcccccccCCCC--ceEEecCc
Confidence 999999999999999999975 7899988775 899998888999999985 99999999
Q ss_pred HHHHHHHhhc-ccCCCCCCcccCCC--CCCccchHHHHHHhhC--CCCHHHHHHHHh--cCCcchHHHHHHHHHHHHhhH
Q 015509 287 KDVIANKIKR-CKTDSSAGLEFDNL--ERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHP 359 (405)
Q Consensus 287 pe~I~kKI~k-A~Td~~~~i~~~~~--~rpev~nll~i~~~~t--~~~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~p 359 (405)
+++|++||.+ |+++++.++|++++ ++|+|++-++|+++|- +.++|++..+|. ++..||+|+.+.+.|.++++.
T Consensus 294 ~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YLsFFldDD~kLeq~r~~Y~~G~mltgEmKk~~ievLq~~V~~ 373 (397)
T KOG2145|consen 294 AKQIKNKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYLSFFLDDDDKLEQIRKDYTSGEMLTGEMKKLCIEVLQEFVSR 373 (397)
T ss_pred HHHHHHHHHHhhccCCcchHHHHHHhCCCCcceehHHHHHHHhccHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHH
Confidence 9999999986 99999999998876 8999999999999984 558999999996 699999999999999999999
Q ss_pred HHHHHHHHhc
Q 015509 360 IQVRYEEIMS 369 (405)
Q Consensus 360 irer~~e~~~ 369 (405)
+|++++++..
T Consensus 374 hQa~Rk~Vtd 383 (397)
T KOG2145|consen 374 HQAARKEVTD 383 (397)
T ss_pred HHHHHHhccH
Confidence 9999998863
No 22
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-42 Score=330.24 Aligned_cols=253 Identities=25% Similarity=0.263 Sum_probs=203.5
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHhc-----cCC------------CcChHHHHHHHHHH-HHHHHHc---CCCC
Q 015509 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ-----ITL------------PYDTQQLSKATRET-AAIYLAC---GIDN 135 (405)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ-----it~------------~~d~~~l~~~~~~~-~~~~lA~---GiDp 135 (405)
+.+.||||+.|||+||+|.+++++ +..++- +|+ ....+.+..++.++ ...|-|. +++.
T Consensus 33 r~l~~YwGtaptGrpHiay~vpm~-kiadflkAGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l~~~nv~l 111 (360)
T KOG2144|consen 33 RALKCYWGTAPTGRPHIAYFVPMM-KIADFLKAGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAALGSINVPL 111 (360)
T ss_pred cCceeeecCCCCCCcceeeeeehh-HHHHHHhcCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhhcCCcH
Confidence 457899999999999999988865 433332 222 33444444555444 3344444 5567
Q ss_pred CceEEEEcCCc---hhhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccch
Q 015509 136 SKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 212 (405)
Q Consensus 136 ~k~~if~qS~v---~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ 212 (405)
|+..|...|++ .+++-..+.++..++-..++++.. +..++ .++..++.++||.|||+|++++.+|.+++|.||
T Consensus 112 EkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~aga--evvkq--ve~plls~llYP~MQalDe~~L~vD~qfgGvDQ 187 (360)
T KOG2144|consen 112 EKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKAGA--EVVKQ--VENPLLSGLLYPGMQALDEFYLEVDAQFGGVDQ 187 (360)
T ss_pred HHHhhhcccccccCccchhhHHHHHhhccHhHHHHhhh--hHHHh--hcchhhhhhhhhhHHHhhHHHHhhhHHhcCccH
Confidence 77777778876 346667778887887777766554 22333 278899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHH
Q 015509 213 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 292 (405)
Q Consensus 213 ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~k 292 (405)
|..+.|||++++.++ +++|.+++++ ++|||.+| +|||||+|+ |.|+|.|+|++|.+
T Consensus 188 RKIf~~A~eylp~l~------------------ykKrihLmnp---MvPGL~q~-~KMSsSd~~--SkIdllD~~~~V~k 243 (360)
T KOG2144|consen 188 RKIFVLAEEYLPDLG------------------YKKRIHLMNP---MVPGLAQG-EKMSSSDPL--SKIDLLDEPADVNK 243 (360)
T ss_pred HHHHHHHHHhhhhhC------------------cccceeecCC---CCcccccc-CccccCCcc--cccccccCHHHHHH
Confidence 999999999999987 4678888875 99999755 799999975 99999999999999
Q ss_pred HhhcccCCCCCCcccCCCCCCccchHHHHHHhh-----------------------CCCCHHHHHHHHh--cCCcchHHH
Q 015509 293 KIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI-----------------------SGKTKGEVAEECQ--NMNWGTFKP 347 (405)
Q Consensus 293 KI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~-----------------------t~~~~eel~~~y~--~~~~gdlK~ 347 (405)
||++||| +|+..+.|+|+++++++ +++++||++++|. .+||||||+
T Consensus 244 KI~kAfC---------ePg~ve~Ng~L~fvkyvvfP~~~e~~~~~i~r~ek~GG~~tf~syed~e~~y~~~~lhPgDLK~ 314 (360)
T KOG2144|consen 244 KIKKAFC---------EPGNVEGNGCLSFVKYVVFPIFEEFGVEVIDRPEKFGGNKTFKSYEDIEKDYEEGELHPGDLKK 314 (360)
T ss_pred HHHHhcC---------CCCCcCCCcHHHHHHHHHhhhHHhcCceeecchhhcCCcchhHHHHHHHHHHHhCCcChHHHHH
Confidence 9999999 56778889999998874 5668999999997 699999999
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q 015509 348 LLTDALIEHLHPIQVRYEEI 367 (405)
Q Consensus 348 ~Lae~i~~~L~pirer~~e~ 367 (405)
.|..+|+++|+|||+.++..
T Consensus 315 ~l~~alN~lL~~ir~~~~~~ 334 (360)
T KOG2144|consen 315 GLEKALNELLQPIREEFSNW 334 (360)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999988754
No 23
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=6.6e-39 Score=325.56 Aligned_cols=236 Identities=21% Similarity=0.240 Sum_probs=176.9
Q ss_pred CceEEEeeCCCC-cchhhhHHHHHHHHHHhc------------cC-CCcC------------hHHHHHHHHHHHHHHHHc
Q 015509 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQ------------IT-LPYD------------TQQLSKATRETAAIYLAC 131 (405)
Q Consensus 78 ~~~i~sGi~PTG-~lHLGnylg~i~~~~~lQ------------it-~~~d------------~~~l~~~~~~~~~~~lA~ 131 (405)
++++|+||+||| .||||||++ +.+|.++| .| ..+| .+.+++|+ ++++.++|+
T Consensus 30 ~~~vy~G~dPTg~~lHlGh~v~-l~~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~~i~~~la~ 107 (377)
T TIGR00234 30 KIKLYVGFDPTAPSLHLGHLVP-LLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIAR 107 (377)
T ss_pred CCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-HHHHHHHHH
Confidence 689999999999 799999997 56888888 12 1222 33345555 678889999
Q ss_pred CCCCCceEEEEcCCchh---hhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceecc
Q 015509 132 GIDNSKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 208 (405)
Q Consensus 132 GiDp~k~~if~qS~v~~---h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpv 208 (405)
||||+++.||+||+|.. +.++.|.+++.+++++|.+..+|+.+. . +++++++|+||+|||+|++++++|++||
T Consensus 108 gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~--~--~~is~~ef~YpllQa~D~~~l~~di~~g 183 (377)
T TIGR00234 108 FLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRL--E--RGISLSEFIYPLLQAYDFVYLNVDLQIG 183 (377)
T ss_pred hCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHH--h--cCCCchhhhhHHHHHHHHHHHcCCeeEe
Confidence 99999999999999853 677888899999999999999998543 2 4589999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHH
Q 015509 209 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 288 (405)
Q Consensus 209 G~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe 288 (405)
|.||++|++.+|++|+++|.+.+ |.+|.+++++.....||.+.| .|||.|.+-..++|++.|+||
T Consensus 184 G~DQ~~ni~~g~dLar~~~~~~~--------------~~~t~pLl~~~dg~KmgKS~~-~~i~l~~~~~~~~i~~~d~~D 248 (377)
T TIGR00234 184 GSDQWGNIRKGRDLIRRNLPSLG--------------FGLTVPLLTPADGEKMGKSGG-GAVSLDEGKYDFYQFWINTPD 248 (377)
T ss_pred cchhHHHHHHHHHHHHHhcCCCc--------------eeeceeeecCCCCCCccCCCC-CcccCCccHhhhhhhhcCCcH
Confidence 99999999999999999985432 666666654421123333222 233333320138899999999
Q ss_pred HHHHHhhcccCCCCCCcccCCCCCCccchHHHHHHhhCCCCHHHHHHHHhcCCcchHHHHHHHHHHHHhhH
Q 015509 289 VIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHP 359 (405)
Q Consensus 289 ~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~~~~~gdlK~~Lae~i~~~L~p 359 (405)
++.+||++++|+... ++++++.+ ..+.++.+.|+.+|..|++.++.
T Consensus 249 ~~~~Ki~k~~t~~~~------------------------~ei~~l~~-~~~~~~~~~q~~la~ei~~~vhg 294 (377)
T TIGR00234 249 EDVKKILKLFTFLGL------------------------EEIEALVE-LKGPSPREVKENLAKEITKYVHG 294 (377)
T ss_pred HHHHHHHHHcCCCcH------------------------HHHHHHHH-hcccCHHHHHHHHHHHHHHHhcC
Confidence 999999999995321 23334422 23456667777788777777764
No 24
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.1e-36 Score=320.63 Aligned_cols=211 Identities=15% Similarity=0.192 Sum_probs=182.7
Q ss_pred CCcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCch-hhhHHHHH----HhccccHHHHhhhhcHHHHhHhhCCCCCc
Q 015509 110 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR-AHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVG 184 (405)
Q Consensus 110 ~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~-~h~el~w~----L~~~~~~~~l~R~~~~k~~~~~~~~~~~~ 184 (405)
+.+|.+.|++.++++.+.|.|+|+|++ +.|.|+|+.. .+...||. ++..++++|++|+.+ ++..+
T Consensus 425 ~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~~tl~r~~r~~g---------~~~~~ 494 (682)
T PTZ00348 425 ITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARKNLLSHVEELYG---------GELRN 494 (682)
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHhccHHHHHHHhc---------CCccc
Confidence 359999999999999999999999999 9999999964 34557887 567899999998762 25669
Q ss_pred chhhhhhHHHhhhhhccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCC
Q 015509 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 264 (405)
Q Consensus 185 ~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~ 264 (405)
+|+++||+||++||+++++|++.+|+|||..++||||++++.+ .|.+++. +++|+|.
T Consensus 495 ~s~~iYP~MQ~~Di~~L~~di~~gG~DQRki~mlAre~~~~~~--------------------~~~~~~~---~~~p~l~ 551 (682)
T PTZ00348 495 AGQVIAALMRVATALMLSASHVISTSLDGGINEFAREYTKGRI--------------------ECIQALE---GRVPALH 551 (682)
T ss_pred HHHHHHHHHHHHHHHhcCCCeeecChhHHHHHHHHHHhccccc--------------------cchhhcC---CCCcccc
Confidence 9999999999999999999999999999999999999998522 2333444 4899998
Q ss_pred CCCCccccCCCCCCceeecCCCHHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHHhh-------------------
Q 015509 265 DGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI------------------- 325 (405)
Q Consensus 265 dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~------------------- 325 (405)
.|..+|++|.+ +|+|+|.|++++|++||++|||. |+ .+.|++++|.+++
T Consensus 552 ~~~~~~~~~s~--~s~i~~~D~~~~i~~Ki~kA~Cp---------p~-~~~Npvl~~~~y~~~~~~~~~i~R~e~~Gg~~ 619 (682)
T PTZ00348 552 RPGAAPAVLGA--DDVLYLDDNDMDIRRKIKKAYSA---------PN-EEANPVISVAQHLLAQQGALSIERGEANGGNV 619 (682)
T ss_pred ccccccCCCCC--CCeeeecCCHHHHHHHHHhCCCC---------CC-CCCCcHHHHHHHHhcCCCeEEEecccccCCCe
Confidence 88889999865 69999999999999999999994 42 3568899999885
Q ss_pred CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHHhhHHHHHHH
Q 015509 326 SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYE 365 (405)
Q Consensus 326 t~~~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~pirer~~ 365 (405)
++.++||++++|. .+||+|||.+++++|+++|+|+|++++
T Consensus 620 ~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~ 661 (682)
T PTZ00348 620 AYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS 661 (682)
T ss_pred eeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999997 599999999999999999999999985
No 25
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.6e-30 Score=262.81 Aligned_cols=258 Identities=21% Similarity=0.211 Sum_probs=190.6
Q ss_pred CceEEEeeCCCC-cchhhhHHHHHHHHHHhc------------cC-CCcCh----HHHHHHH----HHHHHHHH-HcCCC
Q 015509 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQ------------IT-LPYDT----QQLSKAT----RETAAIYL-ACGID 134 (405)
Q Consensus 78 ~~~i~sGi~PTG-~lHLGnylg~i~~~~~lQ------------it-~~~d~----~~l~~~~----~~~~~~~l-A~GiD 134 (405)
+.++|+|++||| .+||||+++. .+..+|| .| ..+|| +..+..+ .++++.+. ++|.+
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l-~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ 110 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPL-MKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKF 110 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHH-HHHHHHHHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhccc
Confidence 789999999999 6999999975 5777788 23 23454 3344333 34554444 57877
Q ss_pred CC-ceEEEEcCCchh---hhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceecccc
Q 015509 135 NS-KASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGE 210 (405)
Q Consensus 135 p~-k~~if~qS~v~~---h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~ 210 (405)
++ ++.+..+|+|.. +.+....++..++++|+.+..+++.+ ...+.++++.+|+||+|||+|+++++.|+..+|.
T Consensus 111 ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R--~~~~~~is~~Ef~YpLmQayD~~~L~~dlq~GG~ 188 (401)
T COG0162 111 LDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKR--LEREQGISFTEFNYPLLQAYDFVYLNKDLQLGGS 188 (401)
T ss_pred CCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHH--hccCCCCchhhhhhHHHHHHHHHHHccchhcCCh
Confidence 77 999999999853 34444456789999999999998843 3322479999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCC-------CCceeec
Q 015509 211 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS-------DQSRINL 283 (405)
Q Consensus 211 DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~-------~~s~I~L 283 (405)
||+.++.++||+++|++ +.+|.+++.| +|.++ ||+ |||||..+ +.|.|.+
T Consensus 189 DQ~~ni~~grdl~rr~g------------------~~~~~~lt~P---LL~~l-dG~-KmgKs~~~a~~~~s~~~Sp~~~ 245 (401)
T COG0162 189 DQWGNILAGRDLIRRLG------------------QKKVVGLTTP---LLTGL-DGK-KMGKSEGGAVWLDSEKTSPYDF 245 (401)
T ss_pred HHHHHHHHHHHHHHHhC------------------CCCeEEEEec---cccCC-CCC-cccccCCCceEccCCCCCcHhh
Confidence 99999999999999965 3556677765 99998 786 88887642 2357888
Q ss_pred CCCHHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHH---------------------hhCC-----CCHHHHHHHH
Q 015509 284 LDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQ---------------------LISG-----KTKGEVAEEC 337 (405)
Q Consensus 284 ~Dspe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~---------------------~~t~-----~~~eel~~~y 337 (405)
.|..+.|..|++.+||.....+. .+.+.+|.+ .+.+ +.+++.+..|
T Consensus 246 yq~~~~i~D~~~~~~~~~~t~l~--------~~eI~~i~~~~~~~~~~r~~k~~LA~e~~~~~hG~~~a~~a~~~~~~~F 317 (401)
T COG0162 246 YQYWMNIEDADVKRFLKLLTFLS--------LEEIEEIEKYVLKGPEPREAKKLLAKEVTKLVHGEEAAEAAEEEFEKLF 317 (401)
T ss_pred hhcHhcCcHHHHHHHHHHhCcCC--------hHHHHHHHHHhhcCCChHHHHHHHHHHhhHhhcCHHHHHHHHHHHHHHH
Confidence 89999999999999996542221 111222222 1222 2456666677
Q ss_pred h-----cCCcchHHH-----HHHHHHHHHhhHHHHHHHHHhc
Q 015509 338 Q-----NMNWGTFKP-----LLTDALIEHLHPIQVRYEEIMS 369 (405)
Q Consensus 338 ~-----~~~~gdlK~-----~Lae~i~~~L~pirer~~e~~~ 369 (405)
. ++++.|+|. .++..++..|.|.|....+..+
T Consensus 318 ~~g~~~~l~~~dlk~~~~~~~~~~lv~~~L~psr~earr~i~ 359 (401)
T COG0162 318 SEGLPENLPPADLKQKLEDGLVDLLVDAGLAPSRSEARRLIQ 359 (401)
T ss_pred hcCCcccCCHHHHhhhhHHHHHHHHHHhCCcccHHHHHhhcc
Confidence 4 478889999 8888888889998887766543
No 26
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.7e-15 Score=151.35 Aligned_cols=242 Identities=19% Similarity=0.259 Sum_probs=154.3
Q ss_pred CceEEEeeCCCCc-chhhhHHHHHHHHHHhc------cCC-------CcChHH------------HHHHHHHH-------
Q 015509 78 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQ------ITL-------PYDTQQ------------LSKATRET------- 124 (405)
Q Consensus 78 ~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ------it~-------~~d~~~------------l~~~~~~~------- 124 (405)
|.+||.|++||.. +|+||+++.| ..+.+| |++ .+||.+ ++.|++.+
T Consensus 63 p~~vYcGfDPTA~SLHvGNLl~lm-~L~hfqr~Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~i 141 (467)
T KOG2623|consen 63 PQYVYCGFDPTAESLHVGNLLALM-VLIHFQRAGHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKI 141 (467)
T ss_pred CceEEecCCCcHHhhhhcchHHHH-HHHHHHHcCCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHH
Confidence 5789999999986 9999999866 555566 332 244432 23333222
Q ss_pred ---HHHHHHcCCCCCceEEEEcCCchhhhHHH-HH--HhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhh
Q 015509 125 ---AAIYLACGIDNSKASVFVQSHVRAHVELM-WL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDI 198 (405)
Q Consensus 125 ---~~~~lA~GiDp~k~~if~qS~v~~h~el~-w~--L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADI 198 (405)
...|.-+|..-.+-+|+.+++|.+.-.|. ++ .+..+.++.|.++-+.+. +....+.+++.+|+|-+|||.|.
T Consensus 142 f~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~SV~~--RLes~~GlSftEFtYQ~lQAYDf 219 (467)
T KOG2623|consen 142 FENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARDSVKS--RLESPNGLSFTEFTYQLLQAYDF 219 (467)
T ss_pred HhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHHHHHH--hhcCCCCCcHHHHHHHHHHHHhH
Confidence 22233345544678899999985433322 22 223566665555555553 33334678999999999999999
Q ss_pred hc----cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCC
Q 015509 199 LL----YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 274 (405)
Q Consensus 199 l~----~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 274 (405)
++ |..+++.+|.||+.|++..-|+.+|+-..-+ .+| .+.. |.|.+- +| .|..||.
T Consensus 220 y~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~------------~vf----GlT~---PLlTss-tG-~KlGKSa 278 (467)
T KOG2623|consen 220 YHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQA------------FVF----GLTF---PLLTSS-TG-AKLGKSA 278 (467)
T ss_pred HHHHHhcCeeEEecccccccccchHHHHHHHhccccc------------cee----eeee---eeEecC-cc-hhhccCC
Confidence 88 4799999999999999999998888642100 111 1111 244442 57 6999996
Q ss_pred CCCCceeecCC---CHHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHHhhCCCCHHHHHHHHh-cCCcchHHHHHH
Q 015509 275 PSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLT 350 (405)
Q Consensus 275 p~~~s~I~L~D---spe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~-~~~~gdlK~~La 350 (405)
+|+|+|.- ||-.+++-.-++.. .++.-++.++.++.-+++++|.++.. +....-..+.||
T Consensus 279 ---GnAvWLdp~~tspy~lYQfF~~~pD-------------d~v~k~LklfTfl~l~eI~~I~~~H~k~P~~r~aQ~~LA 342 (467)
T KOG2623|consen 279 ---GNAVWLDPSKTSPYHLYQFFASLPD-------------DDVEKFLKLFTFLPLEEIKQILEEHRKEPSQRIAQKLLA 342 (467)
T ss_pred ---CceEEecCccCCcHHHHHHHHhCch-------------hHHHHHHHHHhcCCHHHHHHHHHHHhcChhhhhHHHHHH
Confidence 68999975 57777777655533 23344555554444445555555543 333444567788
Q ss_pred HHHHHHhhH
Q 015509 351 DALIEHLHP 359 (405)
Q Consensus 351 e~i~~~L~p 359 (405)
+.|..+++.
T Consensus 343 ~eVTr~VHG 351 (467)
T KOG2623|consen 343 AEVTRMVHG 351 (467)
T ss_pred HHHHHHHcc
Confidence 888888876
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.57 E-value=6.9e-15 Score=141.36 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=116.8
Q ss_pred CCCCcchhhhHHHHHHHHHHhc-------c--CCCcChHHHHHHHHHHHHHHHHcCCCCCceE-------EEEcCCchhh
Q 015509 86 QPTGSIHLGNYLGAIKNWIALQ-------I--TLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFVQSHVRAH 149 (405)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ-------i--t~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~-------if~qS~v~~h 149 (405)
.|||.|||||+.+++.+|...+ + --.+..+...+....+.+++..+||++++.. +|.||+-.+
T Consensus 9 sPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~QS~r~~- 87 (239)
T cd00808 9 SPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQSERLE- 87 (239)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEeeeCCHH-
Confidence 5789999999999999998776 2 2223344466777888888999999999843 899997321
Q ss_pred hHHHHHHhccccHHHHhhhhcHHHHhH---hhCCCCCcchhhhhhHHHhhhhhccccceeccccchHHHHHHHHHHHHHH
Q 015509 150 VELMWLLSSATPIGWLNKMIQFKEKSH---KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 226 (405)
Q Consensus 150 ~el~w~L~~~~~~~~l~R~~~~k~~~~---~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLtRdia~r~ 226 (405)
.|++... ..| -|..+|++.++.|....++++|+.|.|+..|....+.+.+.|
T Consensus 88 --------------------~y~~~~~~L~~~g-----dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aL 142 (239)
T cd00808 88 --------------------IYRKYAEKLLEKG-----DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEAL 142 (239)
T ss_pred --------------------HHHHHHHHHHHcC-----CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHc
Confidence 1222111 112 288999999999999999999999999999999999999998
Q ss_pred hhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecC----CCHHHHHHHhhc
Q 015509 227 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVIANKIKR 296 (405)
Q Consensus 227 n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~----Dspe~I~kKI~k 296 (405)
| ++.|...+. +++++. +| .||||+..+ ..|.-. -+|+.|..-+..
T Consensus 143 g------------------~~~p~~~h~---pll~~~-~g-~KLSKR~~~--~~l~~lr~~G~~p~ai~~~l~~ 191 (239)
T cd00808 143 G------------------WEPPKFAHL---PLILNP-DG-KKLSKRKGD--TSISDYREEGYLPEALLNYLAL 191 (239)
T ss_pred C------------------CCCCceEee---ccccCC-CC-CcccCCCCC--ccHHHHHHCCCCHHHHHHHHHH
Confidence 6 456765544 377776 56 599999742 233211 347777766654
No 28
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.39 E-value=1.7e-12 Score=114.67 Aligned_cols=63 Identities=44% Similarity=0.513 Sum_probs=54.0
Q ss_pred hhHHHhhhhhcccc---ceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCC
Q 015509 190 YPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 266 (405)
Q Consensus 190 YPvLQAADIl~~~a---dlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg 266 (405)
||++|+||++.+.. |++++|.||.+|+++.++++++++ + ...|..+..+ +|.+. +|
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~---~--------------~~~p~~~~~~---~l~~~-~g 136 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAG---G--------------PARPFGLTFG---RVMGA-DG 136 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhC---C--------------CCCceEEEeC---CeECC-CC
Confidence 99999999999999 999999999999999999999986 1 2457777664 78776 55
Q ss_pred CCccccCC
Q 015509 267 LSKMSKSA 274 (405)
Q Consensus 267 ~~KMSKS~ 274 (405)
+|||||.
T Consensus 137 -~KmSks~ 143 (143)
T cd00802 137 -TKMSKSK 143 (143)
T ss_pred -CcCCCCC
Confidence 6999994
No 29
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.94 E-value=3.7e-09 Score=101.30 Aligned_cols=160 Identities=21% Similarity=0.246 Sum_probs=110.5
Q ss_pred CCCCcchhhhHHHHHHHHHHhc-------cCC--CcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchhhhHHHHHH
Q 015509 86 QPTGSIHLGNYLGAIKNWIALQ-------ITL--PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLL 156 (405)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ-------it~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~h~el~w~L 156 (405)
.|||.|||||...++-+|..-+ +-+ .+......+....+..++..+||+.+. .+|.||+-.+.-+.
T Consensus 9 sPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~-~~~~QS~r~~~y~~---- 83 (230)
T cd00418 9 SPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDE-GPYRQSDRFDLYRA---- 83 (230)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCC-CeeehhcCHHHHHH----
Confidence 5789999999999998986543 222 233444556677888889999999885 37889985322111
Q ss_pred hccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchHHHHHHHHHHHHHHhhhhCCcccc
Q 015509 157 SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 236 (405)
Q Consensus 157 ~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~ 236 (405)
+-++-...| |..+|=.--+.|=...+.++|.-|.|+..+-..-+.|++.||
T Consensus 84 --------------~~~~L~~~g------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg--------- 134 (230)
T cd00418 84 --------------YAEELIKKG------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALG--------- 134 (230)
T ss_pred --------------HHHHHHHcC------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcC---------
Confidence 111111111 566666666777778899999999999999999999999876
Q ss_pred ccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecC----CCHHHHHHHhh
Q 015509 237 KLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVIANKIK 295 (405)
Q Consensus 237 ~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~----Dspe~I~kKI~ 295 (405)
++.|...+.+ +|.+. +| +||||++.+ ..|.-. -.|+.|..-+.
T Consensus 135 ---------~~~P~~~H~p---ll~~~-~g-~KLSKr~~~--~~i~~~r~~G~~p~ai~~~l~ 181 (230)
T cd00418 135 ---------WEPPRFYHFP---RLLLE-DG-TKLSKRKLN--TTLRALRRRGYLPEALRNYLA 181 (230)
T ss_pred ---------CCCCeEEEee---eeeCC-CC-CCccCcCCC--cCHHHHHHCCCcHHHHHHHHH
Confidence 5778877765 78775 56 699999843 233221 34666666654
No 30
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.38 E-value=3.5e-06 Score=89.25 Aligned_cols=189 Identities=16% Similarity=0.195 Sum_probs=113.1
Q ss_pred eEEEeeCCC--CcchhhhHHHHHHHHHHhc-------cCC--CcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh
Q 015509 80 RIVSGVQPT--GSIHLGNYLGAIKNWIALQ-------ITL--PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA 148 (405)
Q Consensus 80 ~i~sGi~PT--G~lHLGnylg~i~~~~~lQ-------it~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~ 148 (405)
.|.+.|.|| |.|||||...++-+|.--+ +-+ .+..+...+....+..++..+|||++. ..|+||+-.+
T Consensus 4 ~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe-~py~QSeR~~ 82 (513)
T PRK14895 4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNG-EVIFQSKRNN 82 (513)
T ss_pred CeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCC-CceeEeCcHH
Confidence 356778777 9999999999998986543 222 222233455666788888899999874 3799999432
Q ss_pred -hhHH---HHH----HhccccHHHHhhhhc----------HHHHhHhh-------C---------CCC--C-----cchh
Q 015509 149 -HVEL---MWL----LSSATPIGWLNKMIQ----------FKEKSHKA-------G---------GEN--V-----GVAL 187 (405)
Q Consensus 149 -h~el---~w~----L~~~~~~~~l~R~~~----------~k~~~~~~-------~---------~~~--~-----~~g~ 187 (405)
|.+. ... +-|.++-.+|+.+-. |....+.. + ++. + --|.
T Consensus 83 ~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~~~~~~~~D~v~G~ 162 (513)
T PRK14895 83 LYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSITIHDTLQGE 162 (513)
T ss_pred HHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCCCCceEEEeecccc
Confidence 2222 111 457888777764321 10000000 0 000 0 0012
Q ss_pred hhh-------hHHH---------hh---hhhccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccC
Q 015509 188 LTY-------PVLM---------AS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKV 248 (405)
Q Consensus 188 l~Y-------PvLQ---------AA---DIl~~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~ 248 (405)
+.+ +|++ .| |=...+.|+|..|.||..|.-.-..+.+.|+ +..
T Consensus 163 ~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG------------------~~~ 224 (513)
T PRK14895 163 VVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFG------------------YAV 224 (513)
T ss_pred eecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcC------------------CCC
Confidence 222 2222 11 1122368999999999999988778877764 456
Q ss_pred CccccCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhc
Q 015509 249 PEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 296 (405)
Q Consensus 249 P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~k 296 (405)
|...+.+ +|.++ +| +||||.+. ...+.+ .|+.|.+-+..
T Consensus 225 p~~~H~p---lv~~~-~g-~KLSKR~g----~~~i~~~r~~G~~Peai~n~la~ 269 (513)
T PRK14895 225 PSMTHIP---LIHGA-DG-AKLSKRHG----ALGIEAYKDMGYLPESLCNYLLR 269 (513)
T ss_pred CeEEEEE---eEEcC-CC-CccccccC----chhHHHHHHCCCCHHHHHHHHHH
Confidence 7776654 78776 66 69999974 333321 47777777753
No 31
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.36 E-value=1e-05 Score=85.47 Aligned_cols=184 Identities=20% Similarity=0.227 Sum_probs=112.5
Q ss_pred CCCCcchhhhHHHHHHHHHHhc-------cCC--CcChHHHHHHHHHHHHHHHHcCCCCCce------EEEEcCCchh-h
Q 015509 86 QPTGSIHLGNYLGAIKNWIALQ-------ITL--PYDTQQLSKATRETAAIYLACGIDNSKA------SVFVQSHVRA-H 149 (405)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ-------it~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~------~if~qS~v~~-h 149 (405)
.|||.|||||...++-+|.--. +-+ .+......+....+..++.-+||+.+.. -.|.||+-.+ |
T Consensus 12 SPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gpy~QS~r~~~y 91 (476)
T PRK01406 12 SPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGPYRQSERLDIY 91 (476)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCceehhcCHHHH
Confidence 4679999999999999985433 222 2333445566677888888899998863 1599999432 2
Q ss_pred hHHHH-------HHhccccHHHHhhhhc----------HH---------HHhHh--hCC---------CC----------
Q 015509 150 VELMW-------LLSSATPIGWLNKMIQ----------FK---------EKSHK--AGG---------EN---------- 182 (405)
Q Consensus 150 ~el~w-------~L~~~~~~~~l~R~~~----------~k---------~~~~~--~~~---------~~---------- 182 (405)
.+..- .+.|.++-.+|...-. |. +..+. .|. +.
T Consensus 92 ~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~~~~~~~~D~i~ 171 (476)
T PRK01406 92 KEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEVVFDDLVR 171 (476)
T ss_pred HHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEcCCCCceEEEEecc
Confidence 22211 1557887777754311 00 00000 000 00
Q ss_pred ----Ccchhh---------hhhHHHhhhhh---ccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccc
Q 015509 183 ----VGVALL---------TYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 246 (405)
Q Consensus 183 ----~~~g~l---------~YPvLQAADIl---~~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f 246 (405)
.+...+ -+|..+.||++ ..+.|+|..|.||..|.-.-..+.+.|+ +
T Consensus 172 G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG------------------~ 233 (476)
T PRK01406 172 GEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALG------------------W 233 (476)
T ss_pred ceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhC------------------C
Confidence 000111 15555666663 3478999999999999988888888865 4
Q ss_pred cCCccccCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhc
Q 015509 247 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 296 (405)
Q Consensus 247 ~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~k 296 (405)
..|...+.+ .+.++ +| +||||.+ ..+.+.| .|+.|.+-+..
T Consensus 234 ~~p~~~H~p---li~~~-~g-~klSKR~----g~~~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 234 EVPVFAHLP---LILGP-DG-KKLSKRH----GATSVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred CCCeEEEee---eeeCC-CC-CcccCcC----CccCHHHHHHCCCCHHHHHHHHHH
Confidence 567766654 67776 56 6999997 3555543 56666665543
No 32
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.27 E-value=1.7e-06 Score=86.03 Aligned_cols=166 Identities=19% Similarity=0.228 Sum_probs=102.2
Q ss_pred CCCCcchhhhHHHHHHHHHHhc---------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchhhh----H-
Q 015509 86 QPTGSIHLGNYLGAIKNWIALQ---------ITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHV----E- 151 (405)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ---------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~h~----e- 151 (405)
.|||.|||||+..++.+|..-+ |--.+..+...+....+.+++..+||+.+. ..|+||+-.+.- +
T Consensus 13 SPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe-~~~~QS~r~~~Y~~~~~~ 91 (299)
T PRK05710 13 SPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDG-PVLYQSQRHDAYRAALDR 91 (299)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCC-CceEeeccHHHHHHHHHH
Confidence 4679999999999999996654 222344455667778889999999999986 367799954321 1
Q ss_pred ---HHHHHhccccHHHHhhhhc--------HHHHhHhhCC-CC---------------------------C--cc-----
Q 015509 152 ---LMWLLSSATPIGWLNKMIQ--------FKEKSHKAGG-EN---------------------------V--GV----- 185 (405)
Q Consensus 152 ---l~w~L~~~~~~~~l~R~~~--------~k~~~~~~~~-~~---------------------------~--~~----- 185 (405)
.-+.+.|.++-.++++.-+ |--..+.... +. . .+
T Consensus 92 L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~iRlk~~~~~~~~~D~~~G~~~~~~~~~~~D~Vi 171 (299)
T PRK05710 92 LRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAWRLRVPDAVIAFDDRLQGRQHQDLALAVGDFVL 171 (299)
T ss_pred HHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceEEEEcCCCceEEEEecceeEeeCCCCCCCCEEE
Confidence 1233668888888865431 1000000000 00 0 00
Q ss_pred ----hhhhhhHHHhhhhhccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccc
Q 015509 186 ----ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVM 261 (405)
Q Consensus 186 ----g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~ 261 (405)
|..+|=+-=+.|=...+.++|.=|.|....-..=..|.+.|+ ++.|+..+.+ +|.
T Consensus 172 ~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg------------------~~~P~y~H~p---ll~ 230 (299)
T PRK05710 172 RRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLG------------------LPTPRYLHLP---LVL 230 (299)
T ss_pred EecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcC------------------CCCCeEEEee---ccc
Confidence 222222222222233468889999998766655555666654 6778877765 777
Q ss_pred cCCCCCCccccCCC
Q 015509 262 SLTDGLSKMSKSAP 275 (405)
Q Consensus 262 sL~dg~~KMSKS~p 275 (405)
+. +| +||||++.
T Consensus 231 ~~-~g-~kLSKr~~ 242 (299)
T PRK05710 231 NA-DG-QKLSKQNG 242 (299)
T ss_pred CC-CC-CcccccCC
Confidence 76 67 69999973
No 33
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.24 E-value=3e-06 Score=86.14 Aligned_cols=59 Identities=29% Similarity=0.388 Sum_probs=43.1
Q ss_pred cccceeccccchHHH---HHHHHHHHH-HHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCC
Q 015509 201 YQSDFVPVGEDQKQH---LELTRELAE-RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS 276 (405)
Q Consensus 201 ~~adlVpvG~DQ~~h---leLtRdia~-r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~ 276 (405)
+++|+.|+|.||..| +...+.||+ .|+ .+.|..+... ++ .+ +|.+|||||.
T Consensus 226 l~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg------------------~~~P~~~~ye---~V-~l-~gg~KMSKSk-- 280 (353)
T cd00674 226 LGVDFEPFGKDHASAGGSYDTGKEIAREIFG------------------GEPPVPVMYE---FI-GL-KGGGKMSSSK-- 280 (353)
T ss_pred cCCCEEeeCccccccccHHHHHHHHHHHHhC------------------CCCCeEEEee---eE-Ee-CCCCccCCCC--
Confidence 469999999999999 999999998 654 3446554432 33 34 3336999996
Q ss_pred CCceeecCC
Q 015509 277 DQSRINLLD 285 (405)
Q Consensus 277 ~~s~I~L~D 285 (405)
+|.|.+.|
T Consensus 281 -GnvI~~~d 288 (353)
T cd00674 281 -GNVITPSD 288 (353)
T ss_pred -CCcCCHHH
Confidence 67887654
No 34
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.23 E-value=4.7e-05 Score=80.35 Aligned_cols=183 Identities=18% Similarity=0.235 Sum_probs=108.5
Q ss_pred CCCCcchhhhHHHHHHHHHHhc-------cCC--CcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh-hhHHHHH
Q 015509 86 QPTGSIHLGNYLGAIKNWIALQ-------ITL--PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-HVELMWL 155 (405)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ-------it~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~-h~el~w~ 155 (405)
.|||.|||||...++-+|.--. +-+ .+......+....+..++.-+||+++. ..|.||+-.+ |.+..-.
T Consensus 9 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~de-~~~~QS~r~~~y~~~~~~ 87 (470)
T TIGR00464 9 SPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGLKWLGISWDE-GPYYQSQRLDIYKKYAKE 87 (470)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCChHHHHHHHHHHHHCCCCCCC-CeeehhCCHHHHHHHHHH
Confidence 4789999999999999995432 222 233334456667788888889999884 4899999432 2222211
Q ss_pred -------HhccccHHHHhhhhc----------H---------HHHhHh--hC---------CCCC-------cchhhhh-
Q 015509 156 -------LSSATPIGWLNKMIQ----------F---------KEKSHK--AG---------GENV-------GVALLTY- 190 (405)
Q Consensus 156 -------L~~~~~~~~l~R~~~----------~---------k~~~~~--~~---------~~~~-------~~g~l~Y- 190 (405)
+.|.++-.+++++-. | -+..+. .| ++.. -.|.+.+
T Consensus 88 L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~~~G~~~~~ 167 (470)
T TIGR00464 88 LLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQVRGEITFQ 167 (470)
T ss_pred HHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCCceeEEecccceEEec
Confidence 457788777753311 0 000000 00 0000 0011111
Q ss_pred ---------------hHHH---hhhhhccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccc
Q 015509 191 ---------------PVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPL 252 (405)
Q Consensus 191 ---------------PvLQ---AADIl~~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l 252 (405)
|... +.|=...+.|+|..|.||..|...-..+.+.|+ +..|...
T Consensus 168 ~~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg------------------~~~p~~~ 229 (470)
T TIGR00464 168 NSELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALG------------------WKIPVFA 229 (470)
T ss_pred CccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcC------------------CCCCeEE
Confidence 1111 111122379999999999999988888888765 4567766
Q ss_pred cCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhc
Q 015509 253 IPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 296 (405)
Q Consensus 253 ~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~k 296 (405)
+.+ .+.++ +| +||||.. ..+.|.| .|+.+.+-+..
T Consensus 230 H~p---~l~~~-~g-~kLSKR~----g~~~l~~l~~~g~~p~a~~~~~~~ 270 (470)
T TIGR00464 230 HLP---MILDE-DG-KKLSKRD----GATSIMQFKEQGYLPEALINYLAL 270 (470)
T ss_pred EEe---eeecC-CC-ccccccC----CCccHHHHHHCCCCHHHHHHHHHH
Confidence 654 56665 66 6999997 3454432 57777776653
No 35
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.09 E-value=1.4e-05 Score=85.17 Aligned_cols=65 Identities=26% Similarity=0.477 Sum_probs=48.9
Q ss_pred cccceeccccchHH-HHHHHHHHHH-HHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCC
Q 015509 201 YQSDFVPVGEDQKQ-HLELTRELAE-RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 278 (405)
Q Consensus 201 ~~adlVpvG~DQ~~-hleLtRdia~-r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 278 (405)
+++|+.|.|.||.. +..+++.|++ .|+ .+.|..+... ++..- +| +|||||. +
T Consensus 233 l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg------------------~~~P~~~~y~---~v~~~-~G-~KMSKSk---G 286 (510)
T PRK00750 233 LGVDFEPFGKDHASASYDTSKKIAREILG------------------GEPPEPFVYE---LFLDK-KG-EKISKSK---G 286 (510)
T ss_pred cCCCEEeeCcccCcchHHHHHHHHHHHcC------------------CCCCeeeeee---eEEeC-CC-CcccccC---C
Confidence 46999999999999 9999999998 654 3557665543 55442 45 6999997 6
Q ss_pred ceeecCC-----CHHHHH
Q 015509 279 SRINLLD-----PKDVIA 291 (405)
Q Consensus 279 s~I~L~D-----spe~I~ 291 (405)
|.|.+.| +|+.++
T Consensus 287 N~i~~~d~l~~~~pd~lR 304 (510)
T PRK00750 287 NVITIEDWLEYAPPESLR 304 (510)
T ss_pred CccCHHHHHHHCCHHHHH
Confidence 7888765 566666
No 36
>PLN02627 glutamyl-tRNA synthetase
Probab=97.99 E-value=0.00043 Score=73.88 Aligned_cols=85 Identities=16% Similarity=0.179 Sum_probs=55.4
Q ss_pred eeCCCCcchhhhHHHHHHHHHHhc-------cCC--CcChHHHHHHHHHHHHHHHHcCCCCCceE-------EEEcCCch
Q 015509 84 GVQPTGSIHLGNYLGAIKNWIALQ-------ITL--PYDTQQLSKATRETAAIYLACGIDNSKAS-------VFVQSHVR 147 (405)
Q Consensus 84 Gi~PTG~lHLGnylg~i~~~~~lQ-------it~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~~-------if~qS~v~ 147 (405)
-=.|||.|||||...++-+|.--+ +-+ .+......+....+..++.-+||+.+... -|+||+-.
T Consensus 51 APSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDegp~~gg~~gpy~QSeR~ 130 (535)
T PLN02627 51 APSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEGPDVGGEYGPYRQSERN 130 (535)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcCcccCCCCCCeeeeccH
Confidence 335669999999999999996543 222 22333455666777888888999998642 59999943
Q ss_pred h-hhHHH---H----HHhccccHHHHhhh
Q 015509 148 A-HVELM---W----LLSSATPIGWLNKM 168 (405)
Q Consensus 148 ~-h~el~---w----~L~~~~~~~~l~R~ 168 (405)
+ |.+.+ . .+.|.++-.+++.+
T Consensus 131 ~~Y~~~a~~Li~~G~AY~CfCs~eel~~~ 159 (535)
T PLN02627 131 AIYKQYAEKLLESGHVYPCFCTDEELEAM 159 (535)
T ss_pred HHHHHHHHHHHHcCCeeeccCChHHHHHH
Confidence 2 22211 1 25577777776543
No 37
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.98 E-value=2e-05 Score=76.23 Aligned_cols=151 Identities=21% Similarity=0.179 Sum_probs=94.2
Q ss_pred EeeCCCCcchhhhHHHHHHHHHHhc---------cCCCcChH--HHHHHHHHHHHHHHHcCCCCCceEEEEcCCc-hhhh
Q 015509 83 SGVQPTGSIHLGNYLGAIKNWIALQ---------ITLPYDTQ--QLSKATRETAAIYLACGIDNSKASVFVQSHV-RAHV 150 (405)
Q Consensus 83 sGi~PTG~lHLGnylg~i~~~~~lQ---------it~~~d~~--~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v-~~h~ 150 (405)
.|-.|||.+||||...++-+|.--+ ++-.++.. ...+....+.+++..+|++++ ..+.||+- ..+.
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d--~~~~qS~r~~~y~ 83 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWD--EVVIASDRIELYY 83 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCC--CccchhccHHHHH
Confidence 4667889999999999998885543 33334444 455666778889999999998 47899984 3333
Q ss_pred HHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhh---hhhccccceeccccchHHHHHHHHHHHHHHh
Q 015509 151 ELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVN 227 (405)
Q Consensus 151 el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAA---DIl~~~adlVpvG~DQ~~hleLtRdia~r~n 227 (405)
+..-.|. . +-..|. ....+ +. .++||..+=| |=...+.++|.-|.|-..+-..=.-|.+.|+
T Consensus 84 ~~~~~Li---~-----~G~aY~--~~~~~-~~----~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg 148 (240)
T cd09287 84 EYARKLI---E-----MGGAYV--HPRTG-SK----YRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFG 148 (240)
T ss_pred HHHHHHH---H-----cCCccc--CcccC-Cc----EEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcC
Confidence 3222221 0 001111 00111 11 1234554433 3345689999999998887766666666654
Q ss_pred hhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCC
Q 015509 228 YLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 274 (405)
Q Consensus 228 ~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 274 (405)
++.|...+.+ +|.. +| .||||.+
T Consensus 149 ------------------~~~P~~~H~p---ll~~--~~-~kLSKR~ 171 (240)
T cd09287 149 ------------------WEYPETIHWG---RLKI--EG-GKLSTSK 171 (240)
T ss_pred ------------------CCCCcEEeee---eecC--CC-Ceecccc
Confidence 5668766654 6643 46 7999996
No 38
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.83 E-value=0.00033 Score=73.41 Aligned_cols=184 Identities=22% Similarity=0.193 Sum_probs=105.5
Q ss_pred CCCCcchhhhHHHHHHHHHHhc---------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchhh-hHHH--
Q 015509 86 QPTGSIHLGNYLGAIKNWIALQ---------ITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH-VELM-- 153 (405)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ---------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~h-~el~-- 153 (405)
.|||.|||||...++-+|.--. |.-.+......+....+..++..+|++.|. .|.||+..+. .+..
T Consensus 10 SPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~Rs~~~~~~~I~e~L~wLGI~~De--~y~QSer~~~y~~~~e~ 87 (445)
T PRK12558 10 SPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDR--TFRQSDRFDRYDEAAEK 87 (445)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCcccchHHHHHHHHHHHHHcCCCCCc--cccHHHHHHHHHHHHHH
Confidence 4679999999999999996543 222333344556667778888899999985 7999995322 1111
Q ss_pred -----HHHhccccHHHHhhhhc----------HH---------HHhHh--hC----------CCC-----CcchhhhhhH
Q 015509 154 -----WLLSSATPIGWLNKMIQ----------FK---------EKSHK--AG----------GEN-----VGVALLTYPV 192 (405)
Q Consensus 154 -----w~L~~~~~~~~l~R~~~----------~k---------~~~~~--~~----------~~~-----~~~g~l~YPv 192 (405)
..+-|.++-.+|+.+-. |. +..+. .| ++. .--|.+.++.
T Consensus 88 L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~G~~~~~~ 167 (445)
T PRK12558 88 LKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPHWRFKLDDEPISWDDLIRGEQSIDA 167 (445)
T ss_pred HHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCceEEEecCCCceEEEEEeeeEeeccc
Confidence 11457888777753321 10 00000 00 000 0013333332
Q ss_pred HHhhhhhc-------------------cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCcccc
Q 015509 193 LMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLI 253 (405)
Q Consensus 193 LQAADIl~-------------------~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~ 253 (405)
-..-|.++ .+.++|.=|.|...+--.=.-|.+.|+ ++.|+..+
T Consensus 168 ~~~~D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg------------------~~~P~f~H 229 (445)
T PRK12558 168 ASLSDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALG------------------AKPPVFAH 229 (445)
T ss_pred ccCCCeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhC------------------CCCCeEEE
Confidence 22223332 248888999988765544444444443 56788777
Q ss_pred CCCCcccccCCCCCCccccCCCCCCcee-ecCC---CHHHHHHHhhc
Q 015509 254 PPAGARVMSLTDGLSKMSKSAPSDQSRI-NLLD---PKDVIANKIKR 296 (405)
Q Consensus 254 ~~~~~~l~sL~dg~~KMSKS~p~~~s~I-~L~D---spe~I~kKI~k 296 (405)
.| +|.+- +| +|+||.+.. ..| .+-+ .|+.|.+-+..
T Consensus 230 ~p---li~~~-~g-~KLSKR~g~--~sv~~~r~~G~~Peai~n~la~ 269 (445)
T PRK12558 230 LS---LLTGA-DG-KGLSKRLGG--LSIRSLREDGIEPMAIASLLAR 269 (445)
T ss_pred cc---cccCC-Cc-ccccccCCC--cCHHHHHHCCCCHHHHHHHHHH
Confidence 65 77774 66 699999742 222 1222 58888887754
No 39
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.81 E-value=4.6e-05 Score=73.52 Aligned_cols=146 Identities=15% Similarity=0.082 Sum_probs=87.5
Q ss_pred CCCCcchhhhHHHHHHHHHHhc-------cCC--CcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh-hhHHHHH
Q 015509 86 QPTGSIHLGNYLGAIKNWIALQ-------ITL--PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-HVELMWL 155 (405)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ-------it~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~-h~el~w~ 155 (405)
.|||.|||||...++-+|..-. +-+ .+......+....+.+++..+||+.+ .+++||+-.+ +.+..-.
T Consensus 9 sPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD--~~~~QS~r~~~Y~~~~~~ 86 (238)
T cd00807 9 EPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPY--KVTYASDYFDQLYEYAEQ 86 (238)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCC--CceecccCHHHHHHHHHH
Confidence 4789999999999998885543 222 33344455667788889999999999 5889998532 2222211
Q ss_pred H---hccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHh---hhhhccccceeccccchHHHHHHHHHHHHHHhhh
Q 015509 156 L---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMA---SDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 229 (405)
Q Consensus 156 L---~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQA---ADIl~~~adlVpvG~DQ~~hleLtRdia~r~n~~ 229 (405)
| +...+ . . ..+ + ...+||..+= .|=.+.+.++|.-|.|....-..=.-|.+.|+
T Consensus 87 L~~~g~aY~--------~----~-~~~-~----~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg-- 146 (238)
T cd00807 87 LIKKGKAYV--------H----H-RTG-D----KWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALR-- 146 (238)
T ss_pred HHHcCCeec--------C----C-CCC-C----CEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcC--
Confidence 1 11111 0 0 001 1 1223455443 34445689999999998766555555655554
Q ss_pred hCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCC
Q 015509 230 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 275 (405)
Q Consensus 230 ~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p 275 (405)
++.|..+.-. .+ +. +| .|+||++.
T Consensus 147 ----------------~~~P~~~~~~---hl-n~-~g-~kLSKR~~ 170 (238)
T cd00807 147 ----------------LYRPHQWEFS---RL-NL-TY-TVMSKRKL 170 (238)
T ss_pred ----------------CCCCceeEEE---EE-CC-CC-CCccCcCc
Confidence 5567422211 22 43 56 59999973
No 40
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.78 E-value=0.0002 Score=70.53 Aligned_cols=166 Identities=16% Similarity=0.163 Sum_probs=97.4
Q ss_pred CCCCcchhhhHHHHHHHHHHhc-------cCC--CcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh-hhHHHHH
Q 015509 86 QPTGSIHLGNYLGAIKNWIALQ-------ITL--PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-HVELMWL 155 (405)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ-------it~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~-h~el~w~ 155 (405)
.|||.|||||...++-+|.--. +-+ .+......+....+..++.-+||++++- .++||+-.+ +.+..-.
T Consensus 8 SPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~-~~~QS~r~~~Y~~~~~~ 86 (272)
T TIGR03838 8 SPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGE-VVYQSQRHALYQAALDR 86 (272)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCC-eeeeeCCHHHHHHHHHH
Confidence 4789999999999998985543 222 2333344556677788888899999863 678999543 2222111
Q ss_pred -------HhccccHHHHhhhh-----cHHHHhHh-----hC----------CCCCc-----chhhh--------------
Q 015509 156 -------LSSATPIGWLNKMI-----QFKEKSHK-----AG----------GENVG-----VALLT-------------- 189 (405)
Q Consensus 156 -------L~~~~~~~~l~R~~-----~~k~~~~~-----~~----------~~~~~-----~g~l~-------------- 189 (405)
+.|.++-.++++.. .|...-+. .+ +..+. .|.+.
T Consensus 87 L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~~D~vi~R 166 (272)
T TIGR03838 87 LLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQDLAAAVGDFVLRR 166 (272)
T ss_pred HHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEecCcccCCCEEEEe
Confidence 45888888776541 11100000 00 00000 01111
Q ss_pred ---hhHHHhh---hhhccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccC
Q 015509 190 ---YPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSL 263 (405)
Q Consensus 190 ---YPvLQAA---DIl~~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL 263 (405)
||..+=| |=.+.+.++|.=|.|....--.=.-|.+.|+ ++.|...+.+ +|.+.
T Consensus 167 ~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg------------------~~~P~y~H~p---ll~~~ 225 (272)
T TIGR03838 167 ADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLG------------------LPPPRYLHLP---LVVNA 225 (272)
T ss_pred cCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhC------------------CCCCeEEech---hhhCC
Confidence 2222211 1122368899999998776655555655553 5678766654 78786
Q ss_pred CCCCCccccCCC
Q 015509 264 TDGLSKMSKSAP 275 (405)
Q Consensus 264 ~dg~~KMSKS~p 275 (405)
+| +|+||++.
T Consensus 226 -~g-~kLSKR~~ 235 (272)
T TIGR03838 226 -DG-EKLSKQNG 235 (272)
T ss_pred -CC-CeeeccCC
Confidence 67 59999974
No 41
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=8.2e-05 Score=78.38 Aligned_cols=171 Identities=20% Similarity=0.205 Sum_probs=103.8
Q ss_pred EEEeeCC--CCcchhhhHHHHHHHHHHhc-------cCC--CcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh-
Q 015509 81 IVSGVQP--TGSIHLGNYLGAIKNWIALQ-------ITL--PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 148 (405)
Q Consensus 81 i~sGi~P--TG~lHLGnylg~i~~~~~lQ-------it~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~- 148 (405)
|.+=|.| ||.+||||...++-+|..-+ +-+ .+......+....+..++.-+||+++.. +|+||+..+
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~~R~~~e~~~~I~~~L~WLGl~wde~-~~~QS~r~~~ 88 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDEG-PYYQSERFDI 88 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCCCCc-eeehhhhHHH
Confidence 5556655 59999999999999995543 222 2334445566677778888899999974 899999543
Q ss_pred hhHH-HHH------HhccccHHHHhhhh-----------cHH---------HHhHhhCC----------C--CC------
Q 015509 149 HVEL-MWL------LSSATPIGWLNKMI-----------QFK---------EKSHKAGG----------E--NV------ 183 (405)
Q Consensus 149 h~el-~w~------L~~~~~~~~l~R~~-----------~~k---------~~~~~~~~----------~--~~------ 183 (405)
+.+. .++ +.|.++-.+|+.+- .|- ++....+. + ..
T Consensus 89 Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~~~~~~~D 168 (472)
T COG0008 89 YYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAHPGPVFRD 168 (472)
T ss_pred HHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCCCCCcccc
Confidence 2222 222 34778876555541 111 01111000 0 01
Q ss_pred -cchhhhhh------HHHhhhhhc------------cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCc
Q 015509 184 -GVALLTYP------VLMASDILL------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 244 (405)
Q Consensus 184 -~~g~l~YP------vLQAADIl~------------~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~ 244 (405)
-.|.+..+ +++-+|+.. .+.++|.-|.|...+-..=+-|.+-|+
T Consensus 169 ~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg----------------- 231 (472)
T COG0008 169 LVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALG----------------- 231 (472)
T ss_pred ceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcC-----------------
Confidence 11233333 333344432 258999999998877766666666554
Q ss_pred cccCCccccCCCCcccccCCCCCCccccCCC
Q 015509 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 275 (405)
Q Consensus 245 ~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p 275 (405)
++.|...+.+ +|.+ -+| +||||++.
T Consensus 232 -~~~P~~~H~~---li~~-~~g-~kLSKr~~ 256 (472)
T COG0008 232 -WPPPVYAHLP---LLLN-EDG-KKLSKRKG 256 (472)
T ss_pred -CCCCcEEEee---eeec-CCC-CeecCccC
Confidence 6778877765 7777 455 69999974
No 42
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.52 E-value=0.00022 Score=75.86 Aligned_cols=169 Identities=13% Similarity=0.062 Sum_probs=100.5
Q ss_pred eEEEeeC--CCCcchhhhHHHHHHHHHHhc-------cCC--CcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh
Q 015509 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQ-------ITL--PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA 148 (405)
Q Consensus 80 ~i~sGi~--PTG~lHLGnylg~i~~~~~lQ-------it~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~ 148 (405)
.|.+=|. |||.|||||...++-+|.--+ +-+ .+..+...+....+..++.-+||+++. ++.||+..+
T Consensus 11 ~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~R~~~e~~~~I~~dL~WLGl~wD~--~~~qSdr~~ 88 (523)
T PLN03233 11 QIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPDS--VSFTSDYFE 88 (523)
T ss_pred eEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCccchHHHHHHHHHHHHhCCCCCC--CccccccHH
Confidence 3555554 569999999999998885433 222 233444567777888888899999985 789999643
Q ss_pred -hhHHHHH-------HhccccHHHHhhhh-----------cHHHHhHh--------h----------CC---CCCcchh-
Q 015509 149 -HVELMWL-------LSSATPIGWLNKMI-----------QFKEKSHK--------A----------GG---ENVGVAL- 187 (405)
Q Consensus 149 -h~el~w~-------L~~~~~~~~l~R~~-----------~~k~~~~~--------~----------~~---~~~~~g~- 187 (405)
+.+.+-. +.|.++-.+++..- +..+..+. . .+ .+.+++-
T Consensus 89 ~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n~~~~D~ 168 (523)
T PLN03233 89 PIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRDP 168 (523)
T ss_pred HHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCCCCCcCC
Confidence 3332222 45788877764221 11110000 0 00 0011110
Q ss_pred -----------------hhhhHHHhhhhh---ccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCcccc
Q 015509 188 -----------------LTYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFK 247 (405)
Q Consensus 188 -----------------l~YPvLQAADIl---~~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~ 247 (405)
-.||..+=|-.+ +.+.++|.-|.|...+-..=.-|.+.|+ ++
T Consensus 169 Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg------------------~~ 230 (523)
T PLN03233 169 VLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALG------------------LR 230 (523)
T ss_pred EEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhC------------------CC
Confidence 025555544332 2468999999999888777666766654 56
Q ss_pred CCccccCCCCcccccCCCCCCccccCC
Q 015509 248 VPEPLIPPAGARVMSLTDGLSKMSKSA 274 (405)
Q Consensus 248 ~P~~l~~~~~~~l~sL~dg~~KMSKS~ 274 (405)
.|.. +.+ ...++ .| .||||++
T Consensus 231 ~P~~-~~f---~rln~-~~-~kLSKR~ 251 (523)
T PLN03233 231 RPRI-HAF---ARMNF-MN-TVLSKRK 251 (523)
T ss_pred CCee-eee---EEECC-CC-CcccccC
Confidence 6764 323 45566 46 4999995
No 43
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.52 E-value=0.00041 Score=74.64 Aligned_cols=171 Identities=19% Similarity=0.161 Sum_probs=101.8
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHhc---------cCCCcC--hHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCc
Q 015509 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------ITLPYD--TQQLSKATRETAAIYLACGIDNSKASVFVQSHV 146 (405)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------it~~~d--~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v 146 (405)
+.+...+=.|||.+||||...++-+|.--. ++-.++ .....+....+.+++..+||+++. ++.||+.
T Consensus 101 ~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R~~~e~~~~I~edL~wLGl~wD~--~~~qSdr 178 (567)
T PRK04156 101 KVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDE--VVIQSDR 178 (567)
T ss_pred eEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCcccchHHHHHHHHHHHHHcCCCCCC--ccCcccC
Confidence 345566667779999999999998885433 222233 333455566778888899999984 7899995
Q ss_pred hh-hhHHHHH-------HhccccHHHHhhhhc------HH-----HHh---Hh--hC-------------C---CCCc--
Q 015509 147 RA-HVELMWL-------LSSATPIGWLNKMIQ------FK-----EKS---HK--AG-------------G---ENVG-- 184 (405)
Q Consensus 147 ~~-h~el~w~-------L~~~~~~~~l~R~~~------~k-----~~~---~~--~~-------------~---~~~~-- 184 (405)
.+ +.+.+-. +.|.++-.++++... .. +.. +. .| + .+.+
T Consensus 179 ~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~r 258 (567)
T PRK04156 179 LEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVR 258 (567)
T ss_pred HHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCcc
Confidence 43 2222211 456666555532210 00 000 00 00 0 0000
Q ss_pred ----------------chhhhhhHHHhh---hhhccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCcc
Q 015509 185 ----------------VALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAI 245 (405)
Q Consensus 185 ----------------~g~l~YPvLQAA---DIl~~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~ 245 (405)
-+-..||.++=| |..+.+.|+|.-|.|...+-..=.-+.+.|+
T Consensus 259 D~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg------------------ 320 (567)
T PRK04156 259 DWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFG------------------ 320 (567)
T ss_pred ccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcC------------------
Confidence 011236665433 3344579999999999888777667766654
Q ss_pred ccCCccccCCCCcccccCCCCCCccccCC
Q 015509 246 FKVPEPLIPPAGARVMSLTDGLSKMSKSA 274 (405)
Q Consensus 246 f~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 274 (405)
+..|...+.+ +|. + +| .|||||.
T Consensus 321 ~~~P~~~H~~---~L~-~-~g-~kLSKR~ 343 (567)
T PRK04156 321 WEYPETIHYG---RLK-I-EG-FVLSTSK 343 (567)
T ss_pred CCCceEEEcc---eec-C-CC-ceeeccc
Confidence 4568777664 664 4 56 4999996
No 44
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.51 E-value=0.00034 Score=75.46 Aligned_cols=170 Identities=13% Similarity=0.115 Sum_probs=101.2
Q ss_pred eEEEeeC--CCCcchhhhHHHHHHHHHHhc-------cCC--CcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh
Q 015509 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQ-------ITL--PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA 148 (405)
Q Consensus 80 ~i~sGi~--PTG~lHLGnylg~i~~~~~lQ-------it~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~ 148 (405)
.|.+=|. |||.|||||...++-+|..-+ +-+ .+......+....+..++..+||+++. .+++||+..+
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~R~~~e~~d~IleDL~WLGl~wDe-~~~~QSdr~d 130 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVSWDV-GPTYSSDYMD 130 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCcccCHHHHHHHHHHHHHCCCCCCC-ceeeccccHH
Confidence 4555555 569999999999998985443 222 233445567778888999999999875 3788999643
Q ss_pred -hhHHHHH-------HhccccHHHHhhhh------cHHHH--------hHh--hCC--C------------C--Ccch-h
Q 015509 149 -HVELMWL-------LSSATPIGWLNKMI------QFKEK--------SHK--AGG--E------------N--VGVA-L 187 (405)
Q Consensus 149 -h~el~w~-------L~~~~~~~~l~R~~------~~k~~--------~~~--~~~--~------------~--~~~g-~ 187 (405)
+.+.+-. +.|.++-.+++... .+.+. .+. .|. + + .+++ .
T Consensus 131 ~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n~~~rD~ 210 (601)
T PTZ00402 131 LMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRDP 210 (601)
T ss_pred HHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCCCCCccCC
Confidence 2222222 35677766554321 11111 000 000 0 0 0000 0
Q ss_pred -----------------hhhhHHHhhhhh---ccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCcccc
Q 015509 188 -----------------LTYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFK 247 (405)
Q Consensus 188 -----------------l~YPvLQAADIl---~~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~ 247 (405)
-.||..+=|-.+ +.+.++|.-|.|-..+-..=.-|.+.|+ ++
T Consensus 211 Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg------------------~~ 272 (601)
T PTZ00402 211 VIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALG------------------IR 272 (601)
T ss_pred EEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhC------------------CC
Confidence 134444433222 2468999999999888777767766654 56
Q ss_pred CCccccCCCCcccccCCCCCCccccCC
Q 015509 248 VPEPLIPPAGARVMSLTDGLSKMSKSA 274 (405)
Q Consensus 248 ~P~~l~~~~~~~l~sL~dg~~KMSKS~ 274 (405)
.|...+.+ + .++ +| .||||+.
T Consensus 273 ~P~~~h~~---r-Ln~-~g-~kLSKRk 293 (601)
T PTZ00402 273 KPIVEDFS---R-LNM-EY-SVMSKRK 293 (601)
T ss_pred CceEEEEe---e-EcC-CC-CcccccC
Confidence 67766653 5 465 57 5999996
No 45
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=97.48 E-value=0.00038 Score=72.72 Aligned_cols=81 Identities=26% Similarity=0.333 Sum_probs=54.9
Q ss_pred CCCCcchhhhHHHHHHHHHHhc-------cCC--CcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh-h---hHH
Q 015509 86 QPTGSIHLGNYLGAIKNWIALQ-------ITL--PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H---VEL 152 (405)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ-------it~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~-h---~el 152 (405)
.|||.|||||...++-+|.--. +-+ .+......+....+..++.-+||+.+. .|.||+-.+ | .+.
T Consensus 7 SPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~R~~~e~~~~I~~~L~WlGl~wDe--~y~QSeR~~~Y~~~a~~ 84 (433)
T PRK12410 7 SPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDK--LVYQSENLKFHRQMAEK 84 (433)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCChHHHHHHHHHHHHcCCCCCC--CeehhccHHHHHHHHHH
Confidence 4889999999999999996543 222 233334456667778888889999985 699999432 2 222
Q ss_pred HHH----HhccccHHHHhhh
Q 015509 153 MWL----LSSATPIGWLNKM 168 (405)
Q Consensus 153 ~w~----L~~~~~~~~l~R~ 168 (405)
... +-|.++-.+++.+
T Consensus 85 Li~~G~AY~C~cs~eel~~~ 104 (433)
T PRK12410 85 LLSEKKAFACFCSEEELEAK 104 (433)
T ss_pred HHHcCCeeeecCCHHHHHHH
Confidence 211 4578888777543
No 46
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=97.47 E-value=0.00051 Score=64.85 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=72.4
Q ss_pred EEeeCCCCcchhhhHHHH-----HHHHHHhc---c---CCCcC--------------hHHH-HHHHHHHHHHHHHcCCCC
Q 015509 82 VSGVQPTGSIHLGNYLGA-----IKNWIALQ---I---TLPYD--------------TQQL-SKATRETAAIYLACGIDN 135 (405)
Q Consensus 82 ~sGi~PTG~lHLGnylg~-----i~~~~~lQ---i---t~~~d--------------~~~l-~~~~~~~~~~~lA~GiDp 135 (405)
|++-=|+|.+||||..++ +.+|.++. + +..+| +..+ ........++|.++|+.+
T Consensus 6 ~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 85 (212)
T cd00671 6 FVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRF 85 (212)
T ss_pred ecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 566678999999998864 35565554 1 11122 1122 223345677888899887
Q ss_pred CceEEEEcCCchhhhHHHHH-Hhc--cccHHHHhhhhcHHHHhHhhCCC-C-C---cchhhhhhH---HHhhhhhccccc
Q 015509 136 SKASVFVQSHVRAHVELMWL-LSS--ATPIGWLNKMIQFKEKSHKAGGE-N-V---GVALLTYPV---LMASDILLYQSD 204 (405)
Q Consensus 136 ~k~~if~qS~v~~h~el~w~-L~~--~~~~~~l~R~~~~k~~~~~~~~~-~-~---~~g~l~YPv---LQAADIl~~~ad 204 (405)
+ .++.-|+........|. |.. .+.-. .-..+-+. ..+++. + + +=|..+|.. -.+.|=+-++.|
T Consensus 86 d--~~~~es~~~~~~~~~i~~L~~~g~~~~~---~g~~~~~~-~~~~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~~~~~ 159 (212)
T cd00671 86 D--VWFGESSYLGLMGKVVELLEELGLLYEE---DGALWLDL-TEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFERGAD 159 (212)
T ss_pred c--eecchhhhhhHHHHHHHHHHHCCCEEEe---CCcEEEec-hhhCCCCCeEEEECCCCccchHHHHHHHHHHHhcCCC
Confidence 5 35555554222222221 110 00000 00000000 000000 0 0 226666752 122222225788
Q ss_pred ee--ccccchHHHHHHHHHHHHHHh
Q 015509 205 FV--PVGEDQKQHLELTRELAERVN 227 (405)
Q Consensus 205 lV--pvG~DQ~~hleLtRdia~r~n 227 (405)
.+ .+|.||..|+.-.+.+++.++
T Consensus 160 ~~i~v~g~~~~~~~~~~~~~~~~lg 184 (212)
T cd00671 160 KIIYVVGADHHGHFKRLFAALELLG 184 (212)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHcC
Confidence 88 999999999999999999876
No 47
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=97.31 E-value=0.0016 Score=64.77 Aligned_cols=59 Identities=24% Similarity=0.225 Sum_probs=34.1
Q ss_pred ccceeccccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCce
Q 015509 202 QSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 280 (405)
Q Consensus 202 ~adlVpvG~DQ~-~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 280 (405)
..|+..+|.||. .|++...-.+.-++ + ...|..+... .++. +.+| +|||||. +|.
T Consensus 226 ~~di~~~G~D~~~~h~~~~~~~~~~~~---~--------------~~~~~~~~~~--g~~~-~~~g-~KmSKS~---gn~ 281 (312)
T cd00668 226 PADWHLIGKDILRGWANFWITMLVALF---G--------------EIPPKNLLVH--GFVL-DEGG-QKMSKSK---GNV 281 (312)
T ss_pred CceEEEEecchhhhHHHHHHHHHHHhc---C--------------CCCcceeEEC--cEEE-cCCC-ccccccC---CCc
Confidence 468999999999 88765444433322 1 1123322222 1332 3233 7999997 678
Q ss_pred eecC
Q 015509 281 INLL 284 (405)
Q Consensus 281 I~L~ 284 (405)
|.+.
T Consensus 282 v~~~ 285 (312)
T cd00668 282 IDPS 285 (312)
T ss_pred CCHH
Confidence 8663
No 48
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00017 Score=75.91 Aligned_cols=60 Identities=30% Similarity=0.543 Sum_probs=38.9
Q ss_pred cccceeccccchHHH---HHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCC
Q 015509 201 YQSDFVPVGEDQKQH---LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 277 (405)
Q Consensus 201 ~~adlVpvG~DQ~~h---leLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 277 (405)
+++|+.|.|.|+.-. ..-+++|++-+ || ++.|.++.- -.-+|. |.+|||||.
T Consensus 228 lgVd~EPfGKDH~a~ggSydtg~~I~~ei---~g--------------~~pP~~~~Y----E~i~lk-g~~~mSsSk--- 282 (521)
T COG1384 228 LGVDFEPFGKDHAAAGGSYDTGKRIAREI---FG--------------YEPPVPFVY----EWILLK-GGGKMSSSK--- 282 (521)
T ss_pred cCcccccCCcccccccCchHHHHHHHHHh---cC--------------CCCCCCCce----EEEEec-CCcccccCC---
Confidence 579999999997652 23444444432 66 566776653 234553 458999997
Q ss_pred CceeecCC
Q 015509 278 QSRINLLD 285 (405)
Q Consensus 278 ~s~I~L~D 285 (405)
++.|.+.|
T Consensus 283 G~~i~~~d 290 (521)
T COG1384 283 GNVISLSD 290 (521)
T ss_pred CcEEcHHH
Confidence 57777654
No 49
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.29 E-value=0.012 Score=62.25 Aligned_cols=68 Identities=25% Similarity=0.233 Sum_probs=40.8
Q ss_pred HHhhhhhccccceeccccch-HHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccc
Q 015509 193 LMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMS 271 (405)
Q Consensus 193 LQAADIl~~~adlVpvG~DQ-~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMS 271 (405)
-|+..+|-..-|+-++|.|. -+|+ .++||...- .+|. +-+...++. ..+ .+ +| +|||
T Consensus 211 am~~~~lg~~~Dih~gG~DlifpHh--~neiaqs~a-~~g~--------------p~~~~w~H~--g~v-~~-~G-~KMS 268 (463)
T PRK00260 211 AMSTKYLGETFDIHGGGADLIFPHH--ENEIAQSEA-ATGK--------------PFANYWMHN--GFV-TV-NG-EKMS 268 (463)
T ss_pred HHHHHhcCCCcceecCccccCCCch--HhHHHHHHH-hcCC--------------CcceEEEEc--cEE-cc-CC-Cccc
Confidence 56666666678999999995 4566 556776432 1331 113334433 133 34 66 6999
Q ss_pred cCCCCCCceeecCC
Q 015509 272 KSAPSDQSRINLLD 285 (405)
Q Consensus 272 KS~p~~~s~I~L~D 285 (405)
||. +|.|.+.|
T Consensus 269 KS~---GN~i~~~d 279 (463)
T PRK00260 269 KSL---GNFFTIRD 279 (463)
T ss_pred CcC---CCCCCHHH
Confidence 997 57776643
No 50
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.28 E-value=0.00093 Score=67.09 Aligned_cols=166 Identities=19% Similarity=0.104 Sum_probs=92.5
Q ss_pred CCCCcchhhhHHHHHHHHHHhc-------cC--CCcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchhh----hHH
Q 015509 86 QPTGSIHLGNYLGAIKNWIALQ-------IT--LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH----VEL 152 (405)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ-------it--~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~h----~el 152 (405)
.|||.|||||...++-+|..-. +- -.+......+....+..++.-+||+++ -..|.||+-.+. .+.
T Consensus 9 sPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~D-~~~~~QS~r~~~Y~~~~~~ 87 (314)
T PF00749_consen 9 SPTGYLHIGHARTALLNYLFARKYGGKFILRIEDTDPERCRPEFYDAILEDLRWLGLEWD-YGPYYQSDRLEIYQEAAEK 87 (314)
T ss_dssp -SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSSTTTCHHHHHHHHHHHHHHHT---S-TCEEEGGGGHHHHHHHHHH
T ss_pred CCCCCcccchhHHHHHHHHHHhccCceEEEeccccccccchhhHHHHHHhheeEEEEecC-CeEEeHHHHHHHHHHHHHH
Confidence 4789999999999998985543 22 223334455666778888889999987 358889995432 221
Q ss_pred HH----HHhccccHHHHhhhhcH------------HHH--------hH---hhC---------CCC-C------cchh--
Q 015509 153 MW----LLSSATPIGWLNKMIQF------------KEK--------SH---KAG---------GEN-V------GVAL-- 187 (405)
Q Consensus 153 ~w----~L~~~~~~~~l~R~~~~------------k~~--------~~---~~~---------~~~-~------~~g~-- 187 (405)
.. .+.|.++=.+++..-.- ... .+ ..+ +.. . -.|.
T Consensus 88 L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D~v~g~i~ 167 (314)
T PF00749_consen 88 LIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRDLVRGRII 167 (314)
T ss_dssp HHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEETTTEEEE
T ss_pred HhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccccccccCcceeee
Confidence 11 14577776665543322 110 00 000 000 0 0111
Q ss_pred -----hhhhHHHhhhhh------------ccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc
Q 015509 188 -----LTYPVLMASDIL------------LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 250 (405)
Q Consensus 188 -----l~YPvLQAADIl------------~~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~ 250 (405)
+-.++++-+|.. ..+.++|.=|.|-...-..=.-|.+.|+ ++.|.
T Consensus 168 ~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg------------------~~~P~ 229 (314)
T PF00749_consen 168 FDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALG------------------WPPPP 229 (314)
T ss_dssp EEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCT------------------SSS-E
T ss_pred eccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhC------------------CCCcc
Confidence 223334434433 2468999999998877666666766655 45577
Q ss_pred cccCCCCcccccCCCCCCccccCCC
Q 015509 251 PLIPPAGARVMSLTDGLSKMSKSAP 275 (405)
Q Consensus 251 ~l~~~~~~~l~sL~dg~~KMSKS~p 275 (405)
..+.+ .+.+- +| +|+||++.
T Consensus 230 ~~H~p---l~l~~-~g-~kLSKR~~ 249 (314)
T PF00749_consen 230 YAHLP---LILNE-DG-KKLSKRKG 249 (314)
T ss_dssp EEEEE---EEEET-TS-SBSSTTCS
T ss_pred eEeee---eeecC-CC-cEechhhc
Confidence 66654 66665 66 69999974
No 51
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=97.25 E-value=0.00057 Score=72.97 Aligned_cols=23 Identities=39% Similarity=0.806 Sum_probs=20.0
Q ss_pred CceEEEeeCCCCcchhhhHHHHH
Q 015509 78 KKRIVSGVQPTGSIHLGNYLGAI 100 (405)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylg~i 100 (405)
+..|=||+-|||.+||||+...+
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~ 41 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVI 41 (515)
T ss_pred eEEEecCCCCCCCccccchhhhh
Confidence 57788999999999999988654
No 52
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.23 E-value=0.00041 Score=70.65 Aligned_cols=69 Identities=23% Similarity=0.413 Sum_probs=32.2
Q ss_pred cccceeccccchHH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCC
Q 015509 201 YQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 277 (405)
Q Consensus 201 ~~adlVpvG~DQ~~---hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 277 (405)
+++|+.|.|.|.-. -...+.+||+++ || .+.|..+.-. +-++ .|.+|||||.
T Consensus 233 lgVdfEp~GKDH~~~GGS~d~~~~I~~~i---~g--------------~~pP~~~~YE----~~~~-~g~~kmSsSk--- 287 (360)
T PF01921_consen 233 LGVDFEPFGKDHASPGGSYDTSKRIAREI---LG--------------YEPPVPFPYE----FFLD-KGGGKMSSSK--- 287 (360)
T ss_dssp TT-SEEEEEHHHHCTTSHHHHHHHHHHHC---C-------------------EEEEE------EEE-S------------
T ss_pred cCceeccCCCccCCCCCChhhHHHHHHHH---hC--------------CCCCCCCCee----EEEe-CCCcccccCC---
Confidence 57999999999999 999999999663 44 4556554322 2333 3446999997
Q ss_pred CceeecCC-----CHHHHHHHh
Q 015509 278 QSRINLLD-----PKDVIANKI 294 (405)
Q Consensus 278 ~s~I~L~D-----spe~I~kKI 294 (405)
++.|.+.| +||.++-=+
T Consensus 288 G~~~t~~e~L~~~~PE~lr~l~ 309 (360)
T PF01921_consen 288 GNGITPEEWLEYAPPESLRYLM 309 (360)
T ss_dssp -----HHHHHTTS-HHHHHHHH
T ss_pred CCccCHHHHHHhcCHHHHHHHH
Confidence 56776654 566665433
No 53
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=97.12 E-value=0.0015 Score=54.64 Aligned_cols=47 Identities=34% Similarity=0.323 Sum_probs=32.2
Q ss_pred eeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCC
Q 015509 205 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 274 (405)
Q Consensus 205 lVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 274 (405)
+++.|.|+.+++++.|. .+.|... .+.|+.++.+ ..+ + ++ ..||||+
T Consensus 59 ~~~~G~~~~~~~~~e~~--~~~n~~l---------------~~~~e~v~~~---~~~-~-~~-~~iSSs~ 105 (105)
T cd02156 59 ISVCGEDFQQNRELYRW--VKDNITL---------------PVDPEQVELP---RLN-L-ET-TVMSKRK 105 (105)
T ss_pred HHHHHhhhhhchhHHHH--HHHhcCC---------------CCCCeEEEcc---ccc-c-Cc-eeeccCC
Confidence 89999999999999998 5555321 2446665554 222 2 44 5999984
No 54
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.08 E-value=0.0017 Score=69.17 Aligned_cols=174 Identities=18% Similarity=0.200 Sum_probs=87.2
Q ss_pred EEeeCCCCcchhhhHHHHH-----HHHHHhc---------cCCCcC------------hHHH-HHHHHHHHHHHHHcCCC
Q 015509 82 VSGVQPTGSIHLGNYLGAI-----KNWIALQ---------ITLPYD------------TQQL-SKATRETAAIYLACGID 134 (405)
Q Consensus 82 ~sGi~PTG~lHLGnylg~i-----~~~~~lQ---------it~~~d------------~~~l-~~~~~~~~~~~lA~GiD 134 (405)
|+|--|+|.+|+||.-+++ .++.+.. ++-.++ ++.+ ........++|..+|+.
T Consensus 117 ~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~LgI~ 196 (507)
T PRK01611 117 YVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRLGVH 196 (507)
T ss_pred ecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 5688999999999988754 3443333 111121 1111 23334567788889998
Q ss_pred CCceEEEEcCCchhhhHHHHHHhccccHHHHh----hhhcHHHHhHhhCCC-CC----cchhhhhhHHHhhhhhcc----
Q 015509 135 NSKASVFVQSHVRAHVELMWLLSSATPIGWLN----KMIQFKEKSHKAGGE-NV----GVALLTYPVLMASDILLY---- 201 (405)
Q Consensus 135 p~k~~if~qS~v~~h~el~w~L~~~~~~~~l~----R~~~~k~~~~~~~~~-~~----~~g~l~YPvLQAADIl~~---- 201 (405)
++ .+++.|+.-......+.+..+..-|-+. ...-|. ...++++ .. +=|..+|. +.||-+.
T Consensus 197 ~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~--~~~~~~~~~~vl~ksdG~~~Y~---t~Dia~~~~k~ 269 (507)
T PRK01611 197 FD--VWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVR--LTEFGDDKDRVLIKSDGTYTYF---TRDIAYHLYKF 269 (507)
T ss_pred ee--EEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEE--chhhCCCCCeEEEECCCCccch---HHHHHHHHHHH
Confidence 75 3455554321111122111111000000 000000 0111111 00 22555664 3355442
Q ss_pred ---ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC--c-cccCCCCcccccCCCCCCccccCCC
Q 015509 202 ---QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--E-PLIPPAGARVMSLTDGLSKMSKSAP 275 (405)
Q Consensus 202 ---~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P--~-~l~~~~~~~l~sL~dg~~KMSKS~p 275 (405)
+--+-.+|.||..|+.-...+++.++. ..+ . .++... .++ ...+| +|||||.
T Consensus 270 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~------------------~~~~~~~~~h~~~-glv-~~~~g-~KMSkR~- 327 (507)
T PRK01611 270 ERFDRVIYVVGADHHGHFKRLKAALKALGY------------------DPDALEVLLHQMV-GLV-RGGEG-VKMSTRA- 327 (507)
T ss_pred hhcCEEEEEECCChHHHHHHHHHHHHHcCC------------------CcccceEEEEEEE-Eee-ECCCC-CcccCCC-
Confidence 233449999999999999999888762 111 1 122111 122 22345 6999997
Q ss_pred CCCceeecCCC
Q 015509 276 SDQSRINLLDP 286 (405)
Q Consensus 276 ~~~s~I~L~Ds 286 (405)
++.|.+.|=
T Consensus 328 --Gn~i~l~dl 336 (507)
T PRK01611 328 --GNVVTLDDL 336 (507)
T ss_pred --CceeEHHHH
Confidence 688887653
No 55
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.02 E-value=0.0059 Score=58.06 Aligned_cols=57 Identities=16% Similarity=0.038 Sum_probs=35.8
Q ss_pred ceEEEeeCCCCcchhhhHHHHH-----HHHHHhc---------cCCCc------------ChHH-HHHHHHHHHHHHHHc
Q 015509 79 KRIVSGVQPTGSIHLGNYLGAI-----KNWIALQ---------ITLPY------------DTQQ-LSKATRETAAIYLAC 131 (405)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylg~i-----~~~~~lQ---------it~~~------------d~~~-l~~~~~~~~~~~lA~ 131 (405)
....+|-=|-|.+||||....+ ..|.+++ ++-.+ ++++ ..+++....+++.++
T Consensus 22 ~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l 101 (213)
T cd00672 22 TMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKAL 101 (213)
T ss_pred eEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 3445788888999999976533 4555555 12122 2322 345556677788888
Q ss_pred CCCC
Q 015509 132 GIDN 135 (405)
Q Consensus 132 GiDp 135 (405)
||.+
T Consensus 102 ~i~~ 105 (213)
T cd00672 102 NVLP 105 (213)
T ss_pred CCCC
Confidence 9886
No 56
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=97.01 E-value=0.0019 Score=64.56 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=37.2
Q ss_pred CCCcchhhhHHHHH-----HHHHHhc------c---CCCc------------ChHH-HHHHHHHHHHHHHHcCCCCCceE
Q 015509 87 PTGSIHLGNYLGAI-----KNWIALQ------I---TLPY------------DTQQ-LSKATRETAAIYLACGIDNSKAS 139 (405)
Q Consensus 87 PTG~lHLGnylg~i-----~~~~~lQ------i---t~~~------------d~~~-l~~~~~~~~~~~lA~GiDp~k~~ 139 (405)
|+|.+||||..+.+ ..+.+++ + +-.+ ++.+ ..+......+++.++|+.++- .
T Consensus 11 ~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d~-~ 89 (314)
T cd00812 11 PSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYDW-R 89 (314)
T ss_pred CCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccceec-c
Confidence 57999999988743 4454454 1 1112 2222 344455667788888987652 2
Q ss_pred EEEcCCchhhhHHH
Q 015509 140 VFVQSHVRAHVELM 153 (405)
Q Consensus 140 if~qS~v~~h~el~ 153 (405)
.+.....++|.+..
T Consensus 90 ~~~~t~~~~~~~~v 103 (314)
T cd00812 90 REFTTCDPEYYKFT 103 (314)
T ss_pred cccccCCHHHHHHH
Confidence 23334455555443
No 57
>PLN02907 glutamate-tRNA ligase
Probab=97.00 E-value=0.0024 Score=70.84 Aligned_cols=85 Identities=15% Similarity=0.186 Sum_probs=55.5
Q ss_pred eEEEeeC--CCCcchhhhHHHHHHHHHHhc-------cCC--CcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh
Q 015509 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQ-------ITL--PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA 148 (405)
Q Consensus 80 ~i~sGi~--PTG~lHLGnylg~i~~~~~lQ-------it~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~ 148 (405)
.|.+=|- |||.|||||.-.++-+|.--. +-+ .+..+...+....+..++.-+||++++ ++.||+..+
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp~r~~~e~~~~I~~dl~wLG~~~d~--~~~qS~r~~ 290 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDA--VTYTSDYFP 290 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCcCChHHHHHHHHHHHHcCCCCCC--cccccccHH
Confidence 4666665 459999999999998884432 222 222333456667778888889999986 689999643
Q ss_pred -hhHHHHH-------HhccccHHHHh
Q 015509 149 -HVELMWL-------LSSATPIGWLN 166 (405)
Q Consensus 149 -h~el~w~-------L~~~~~~~~l~ 166 (405)
+.+.+-. +.|.++..+++
T Consensus 291 ~y~~~a~~Li~~G~aY~~~~~~~~~~ 316 (722)
T PLN02907 291 QLMEMAEKLIKEGKAYVDDTPREQMR 316 (722)
T ss_pred HHHHHHHHHHHcCCeeecCCCHHHHH
Confidence 3222221 34677766654
No 58
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=96.07 E-value=0.012 Score=63.58 Aligned_cols=86 Identities=16% Similarity=0.099 Sum_probs=57.9
Q ss_pred ceEEEeeCC--CCcchhhhHHHHHHHHHHhc---------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCch
Q 015509 79 KRIVSGVQP--TGSIHLGNYLGAIKNWIALQ---------ITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR 147 (405)
Q Consensus 79 ~~i~sGi~P--TG~lHLGnylg~i~~~~~lQ---------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~ 147 (405)
-.|.+=|.| ||.|||||...++-+|.--+ +.-.++.+...+....+..++..+|++++. ++.||+..
T Consensus 92 ~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTDp~R~~~e~~~~I~edL~wLGi~~d~--~~~qSd~~ 169 (560)
T TIGR00463 92 GEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDLDWLGVKGDE--VVYQSDRI 169 (560)
T ss_pred CeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCcccccHHHHHHHHHHHHHcCCCCCc--cccccccH
Confidence 356666665 59999999999988885433 222333444556677788889999999984 78999954
Q ss_pred h-hhHHHHH-------HhccccHHHHh
Q 015509 148 A-HVELMWL-------LSSATPIGWLN 166 (405)
Q Consensus 148 ~-h~el~w~-------L~~~~~~~~l~ 166 (405)
+ +.+..-. +.|.++-.+++
T Consensus 170 ~~y~~~a~~Li~~G~AY~C~cs~eei~ 196 (560)
T TIGR00463 170 EEYYDYCRKLIEMGKAYVCDCPPEEFR 196 (560)
T ss_pred HHHHHHHHHHHHcCCceeecCCHHHHH
Confidence 3 3222221 45777777664
No 59
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=95.96 E-value=0.017 Score=62.03 Aligned_cols=85 Identities=13% Similarity=0.049 Sum_probs=56.2
Q ss_pred EEEeeC--CCCcchhhhHHHHHHHHHHhc-------cCC--CcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh-
Q 015509 81 IVSGVQ--PTGSIHLGNYLGAIKNWIALQ-------ITL--PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 148 (405)
Q Consensus 81 i~sGi~--PTG~lHLGnylg~i~~~~~lQ-------it~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~- 148 (405)
|.+=|. |||.|||||.-.++-+|.--+ +-+ .+......+....+..++.-+||+++. .+++||+..+
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLGi~~d~-~~~~qS~r~~~ 108 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKEDVRWLGFDWSG-ELRYASDYFDQ 108 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCcCChHHHHHHHHHHHHcCCCCCC-CceeeecCHHH
Confidence 555554 569999999999998885433 222 223334556677788888889999943 3788999644
Q ss_pred hhHHHHH-------HhccccHHHHh
Q 015509 149 HVELMWL-------LSSATPIGWLN 166 (405)
Q Consensus 149 h~el~w~-------L~~~~~~~~l~ 166 (405)
+.+.+.. +.|.++-.+++
T Consensus 109 ~y~~a~~Li~~G~AY~c~cs~eei~ 133 (554)
T PRK05347 109 LYEYAVELIKKGKAYVDDLSAEEIR 133 (554)
T ss_pred HHHHHHHHHHcCCEeeCCCCHHHHH
Confidence 4444433 34777766654
No 60
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=95.71 E-value=0.019 Score=61.80 Aligned_cols=85 Identities=12% Similarity=0.024 Sum_probs=56.5
Q ss_pred eEEEeeC--CCCcchhhhHHHHHHHHHHhc-------cCC--CcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh
Q 015509 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQ-------ITL--PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA 148 (405)
Q Consensus 80 ~i~sGi~--PTG~lHLGnylg~i~~~~~lQ-------it~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~ 148 (405)
.+.+=|. |||.|||||...++-+|.--+ +-+ .+......+....+..++.-+||++++ ++.||++.+
T Consensus 51 kv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDTDp~r~~~e~~~~I~~dL~wLGi~~D~--~~~qS~y~~ 128 (574)
T PTZ00437 51 KPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPETEEQVYIDAIMEMVKWMGWKPDW--VTFSSDYFD 128 (574)
T ss_pred cEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCC--CCcCchhHH
Confidence 3555555 569999999999998885433 222 223334556677788888899999985 568999754
Q ss_pred -hhHHHHH-------HhccccHHHHh
Q 015509 149 -HVELMWL-------LSSATPIGWLN 166 (405)
Q Consensus 149 -h~el~w~-------L~~~~~~~~l~ 166 (405)
+.+.+-. +.|.++-.+++
T Consensus 129 ~~ye~A~~Li~~G~AY~C~cs~eei~ 154 (574)
T PTZ00437 129 QLHEFAVQLIKDGKAYVDHSTPDELK 154 (574)
T ss_pred HHHHHHHHHHHcCCEEEcCCCHHHHH
Confidence 3333322 45777777664
No 61
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=95.57 E-value=0.026 Score=60.38 Aligned_cols=81 Identities=9% Similarity=0.001 Sum_probs=53.5
Q ss_pred CCCCcchhhhHHHHHHHHHHhc-------cCC--CcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh-hhHHHHH
Q 015509 86 QPTGSIHLGNYLGAIKNWIALQ-------ITL--PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-HVELMWL 155 (405)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ-------it~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~-h~el~w~ 155 (405)
.|||.|||||...++-+|.--+ +-+ .+......+....+.+++.-+|++++. .+++||+..+ +.+.+-.
T Consensus 8 sPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLG~~~d~-~~~~qS~~~~~~~~~a~~ 86 (522)
T TIGR00440 8 EPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEG-KIRYSSDYFDELYRYAEE 86 (522)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCcccCChHHHHHHHHHHHHcCCCCCC-CceEccccHHHHHHHHHH
Confidence 5889999999999998885433 222 223334556677788888899999942 3678999643 3332222
Q ss_pred -------HhccccHHHHhh
Q 015509 156 -------LSSATPIGWLNK 167 (405)
Q Consensus 156 -------L~~~~~~~~l~R 167 (405)
+.|.++-.++++
T Consensus 87 Li~~G~AY~c~cs~eel~~ 105 (522)
T TIGR00440 87 LIKKGLAYVDELTPEEIRE 105 (522)
T ss_pred HHHcCCEEeecCCHHHHHH
Confidence 457777666543
No 62
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=95.26 E-value=0.037 Score=61.83 Aligned_cols=86 Identities=12% Similarity=0.127 Sum_probs=55.2
Q ss_pred eEEEeeC--CCCcchhhhHHHHHHHHHHhc-------cCC--CcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh
Q 015509 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQ-------ITL--PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA 148 (405)
Q Consensus 80 ~i~sGi~--PTG~lHLGnylg~i~~~~~lQ-------it~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~ 148 (405)
.|.+=|- |||.|||||...++-+|.--+ +-+ .+......+....+..++.-+|++++. .+|.||+..+
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~r~~~e~~~~I~~dl~wLG~~wd~-~~~~qS~~~~ 109 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFDWGE-HLYYASDYFE 109 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCChHHHHHHHHHHHHcCCCCCC-CceEeecCHH
Confidence 3556555 569999999999988885433 222 222334556677788888889999764 3688999643
Q ss_pred -hhHHHH-------HHhccccHHHHh
Q 015509 149 -HVELMW-------LLSSATPIGWLN 166 (405)
Q Consensus 149 -h~el~w-------~L~~~~~~~~l~ 166 (405)
+.+.+- .+.|.++-.+++
T Consensus 110 ~y~~~a~~Li~~G~aY~c~cs~eei~ 135 (771)
T PRK14703 110 RMYAYAEQLIKMGLAYVDSVSEEEIR 135 (771)
T ss_pred HHHHHHHHHHHcCCcccCcCCHHHHH
Confidence 322221 145777766554
No 63
>PLN02859 glutamine-tRNA ligase
Probab=95.22 E-value=0.038 Score=61.53 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=55.5
Q ss_pred EEEee--CCCCcchhhhHHHHHHHHHHhc-------cCC--CcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCch-h
Q 015509 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQ-------ITL--PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR-A 148 (405)
Q Consensus 81 i~sGi--~PTG~lHLGnylg~i~~~~~lQ-------it~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~-~ 148 (405)
|.+=| .|||.|||||.-.++-+|.--+ +-+ .+......+....+..++.-+|++|++ ++.||+.. +
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDTdp~r~~~e~~~~I~edL~WLG~~~d~--~~~qSd~f~~ 342 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYIDHIEEIVEWMGWEPFK--ITYTSDYFQE 342 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCccchHHHHHHHHHHHHcCCCCCC--cccccHhHHH
Confidence 44555 4669999999999888885433 222 223334556667778888889999985 78999975 3
Q ss_pred hhHHHHH-------HhccccHHHHh
Q 015509 149 HVELMWL-------LSSATPIGWLN 166 (405)
Q Consensus 149 h~el~w~-------L~~~~~~~~l~ 166 (405)
+-+.+-. +.|.++-.+++
T Consensus 343 ~Y~~A~~Li~~G~AY~C~ct~eei~ 367 (788)
T PLN02859 343 LYELAVELIRRGHAYVDHQTPEEIK 367 (788)
T ss_pred HHHHHHHHHHcCCeEeccCCHHHHH
Confidence 4333322 44777766554
No 64
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=91.77 E-value=0.4 Score=49.50 Aligned_cols=56 Identities=20% Similarity=0.144 Sum_probs=42.7
Q ss_pred cccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHHhhCCCCHHHHH
Q 015509 258 ARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVA 334 (405)
Q Consensus 258 ~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~t~~~~eel~ 334 (405)
+.++++ || .|||||. +++|++++++.+.+.++++.. ....-.|++++++...+||.
T Consensus 212 pLl~~~-dg-~KmgKS~---~~~i~l~~~~~~~~i~~~d~~----------------D~~~~Ki~k~~t~~~~~ei~ 267 (377)
T TIGR00234 212 PLLTPA-DG-EKMGKSG---GGAVSLDEGKYDFYQFWINTP----------------DEDVKKILKLFTFLGLEEIE 267 (377)
T ss_pred eeecCC-CC-CCccCCC---CCcccCCccHhhhhhhhcCCc----------------HHHHHHHHHHcCCCcHHHHH
Confidence 588887 67 6999996 579999999877777764331 23466788888998888876
No 65
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=88.87 E-value=1.2 Score=49.39 Aligned_cols=72 Identities=17% Similarity=0.301 Sum_probs=45.7
Q ss_pred CCceEEEee-CCCCcchhhhHHHHH-----HHHHHhc------cCCC---------------cChHH-HHHHHHHHHHHH
Q 015509 77 VKKRIVSGV-QPTGSIHLGNYLGAI-----KNWIALQ------ITLP---------------YDTQQ-LSKATRETAAIY 128 (405)
Q Consensus 77 ~~~~i~sGi-~PTG~lHLGnylg~i-----~~~~~lQ------it~~---------------~d~~~-l~~~~~~~~~~~ 128 (405)
++..|-|++ -|+|.+||||..+.+ ..|.+++ ++-. .++.+ ..+++....++|
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 81 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDF 81 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 356677777 689999999988643 4455554 1111 12333 355567778889
Q ss_pred HHcCCCCCceEEEEcCCchhhhH
Q 015509 129 LACGIDNSKASVFVQSHVRAHVE 151 (405)
Q Consensus 129 lA~GiDp~k~~if~qS~v~~h~e 151 (405)
.++|++++ .|....-++|.+
T Consensus 82 ~~l~i~~d---~f~rtt~~~h~~ 101 (673)
T PRK00133 82 AGFGISFD---NYGSTHSEENRE 101 (673)
T ss_pred HHhCCCCC---CCccCCcHHHHH
Confidence 99999887 355555455543
No 66
>PLN02224 methionine-tRNA ligase
Probab=87.61 E-value=1.5 Score=48.13 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=43.5
Q ss_pred CceEEEee-CCCCcchhhhHHHHH-----HHHHHhc------cCC---Cc------------Ch-HHHHHHHHHHHHHHH
Q 015509 78 KKRIVSGV-QPTGSIHLGNYLGAI-----KNWIALQ------ITL---PY------------DT-QQLSKATRETAAIYL 129 (405)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylg~i-----~~~~~lQ------it~---~~------------d~-~~l~~~~~~~~~~~l 129 (405)
++.|-|++ -|+|.+||||..+.+ ..|.+++ ++- .+ ++ +.+++++....+.+.
T Consensus 70 ~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~ 149 (616)
T PLN02224 70 TFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWK 149 (616)
T ss_pred eEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 35666777 778999999988743 5566665 111 11 22 234555666677888
Q ss_pred HcCCCCCceEEEEcCCchhhh
Q 015509 130 ACGIDNSKASVFVQSHVRAHV 150 (405)
Q Consensus 130 A~GiDp~k~~if~qS~v~~h~ 150 (405)
++||+++ .|....-++|.
T Consensus 150 ~l~I~~D---~f~rTt~~~h~ 167 (616)
T PLN02224 150 DLDIAYD---KFIRTTDPKHE 167 (616)
T ss_pred HcCCCCC---cCeeCCCHHHH
Confidence 9999987 34444444453
No 67
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=87.01 E-value=1.7 Score=45.14 Aligned_cols=62 Identities=21% Similarity=0.380 Sum_probs=37.2
Q ss_pred CCCCcchhhhHHHHH-----HHHHHhc------cC---------------CCcChHH-HHHHHHHHHHHHHHcCCCCCce
Q 015509 86 QPTGSIHLGNYLGAI-----KNWIALQ------IT---------------LPYDTQQ-LSKATRETAAIYLACGIDNSKA 138 (405)
Q Consensus 86 ~PTG~lHLGnylg~i-----~~~~~lQ------it---------------~~~d~~~-l~~~~~~~~~~~lA~GiDp~k~ 138 (405)
-|.|.|||||..+.+ +.|.+++ +| ..-+|++ +.++.....++|.++||+.+
T Consensus 9 Y~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D-- 86 (391)
T PF09334_consen 9 YPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYD-- 86 (391)
T ss_dssp ETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---S--
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCc--
Confidence 367999999977643 5566666 11 1234544 45666777888999999997
Q ss_pred EEEEcCCchhhh
Q 015509 139 SVFVQSHVRAHV 150 (405)
Q Consensus 139 ~if~qS~v~~h~ 150 (405)
.|.++.-++|.
T Consensus 87 -~F~rTt~~~h~ 97 (391)
T PF09334_consen 87 -RFIRTTDDRHK 97 (391)
T ss_dssp -EEEETTSHHHH
T ss_pred -ceeCCCCHHHH
Confidence 46666655554
No 68
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=86.70 E-value=0.81 Score=52.48 Aligned_cols=58 Identities=28% Similarity=0.281 Sum_probs=36.2
Q ss_pred hccccceeccccchH---HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCC
Q 015509 199 LLYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 275 (405)
Q Consensus 199 l~~~adlVpvG~DQ~---~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p 275 (405)
..+-+|+...|.||. .|-.+-..++- .| ...|..++.. .++... +| +|||||.
T Consensus 542 ~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-----~g--------------~~P~k~vl~H--G~vld~-~G-~KMSKSl- 597 (912)
T PRK05743 542 LGYPADLYLEGSDQHRGWFQSSLLTSVAT-----RG--------------KAPYKQVLTH--GFTVDG-KG-RKMSKSL- 597 (912)
T ss_pred cCCCceEEEecccccchHHHHHHHHHHHh-----cC--------------CCccceeEEe--eeEECC-CC-CCCCCCC-
Confidence 345689999999997 44455555543 22 2334444443 255554 56 6999997
Q ss_pred CCCceee
Q 015509 276 SDQSRIN 282 (405)
Q Consensus 276 ~~~s~I~ 282 (405)
+|.|.
T Consensus 598 --GNvId 602 (912)
T PRK05743 598 --GNVID 602 (912)
T ss_pred --CCcCC
Confidence 56774
No 69
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=86.28 E-value=1.9 Score=46.49 Aligned_cols=69 Identities=20% Similarity=0.362 Sum_probs=43.1
Q ss_pred ceEEEeeCCC--CcchhhhHHHH------HHHHHHhc------cC---CCc------------ChHH-HHHHHHHHHHHH
Q 015509 79 KRIVSGVQPT--GSIHLGNYLGA------IKNWIALQ------IT---LPY------------DTQQ-LSKATRETAAIY 128 (405)
Q Consensus 79 ~~i~sGi~PT--G~lHLGnylg~------i~~~~~lQ------it---~~~------------d~~~-l~~~~~~~~~~~ 128 (405)
..+++.-=|+ |.+||||..+. +..|.+++ ++ -.+ ++.+ ..+++....+++
T Consensus 4 ~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 83 (556)
T PRK12268 4 RILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDF 83 (556)
T ss_pred cEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3556666677 99999998864 35566666 11 111 2222 355567778889
Q ss_pred HHcCCCCCceEEEEcCCchhhh
Q 015509 129 LACGIDNSKASVFVQSHVRAHV 150 (405)
Q Consensus 129 lA~GiDp~k~~if~qS~v~~h~ 150 (405)
.++|++++. |..+.-++|.
T Consensus 84 ~~l~i~~d~---~~~t~~~~~~ 102 (556)
T PRK12268 84 KKLGISYDL---FTRTTSPNHH 102 (556)
T ss_pred HHcCCcCCC---CcCCCCHHHH
Confidence 999999873 4334434444
No 70
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=86.26 E-value=1.2 Score=47.75 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=41.2
Q ss_pred ceEEEee--CCCCcchhhhHHHHHHHHHHhc-------cCCC-cCh-HHHHHHHHHHHHHHHHcCCCCCceEEEEcCCc
Q 015509 79 KRIVSGV--QPTGSIHLGNYLGAIKNWIALQ-------ITLP-YDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHV 146 (405)
Q Consensus 79 ~~i~sGi--~PTG~lHLGnylg~i~~~~~lQ-------it~~-~d~-~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v 146 (405)
-.|++-| +|||.+||||.--++.||.-.| +.+. -+| ++-.+.-..+..++--+||.|++ +=.-|++
T Consensus 199 GkVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDDTNPaKE~~eFe~~IleDl~~LgIkpd~--~TyTSDy 275 (712)
T KOG1147|consen 199 GKVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDTNPAKENEEFEDVILEDLSLLGIKPDR--VTYTSDY 275 (712)
T ss_pred CceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecCCCcchhhHHHHHHHHHHHHHhCcCcce--eeechhh
Confidence 3555655 6789999999998887765433 1221 123 23333345567777788999996 3345554
No 71
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.60 E-value=2.6 Score=45.82 Aligned_cols=64 Identities=23% Similarity=0.348 Sum_probs=40.9
Q ss_pred CCCCcchhhhHHHHH--HHHHHhc---------cCC---------------CcChHH-HHHHHHHHHHHHHHcCCCCCce
Q 015509 86 QPTGSIHLGNYLGAI--KNWIALQ---------ITL---------------PYDTQQ-LSKATRETAAIYLACGIDNSKA 138 (405)
Q Consensus 86 ~PTG~lHLGnylg~i--~~~~~lQ---------it~---------------~~d~~~-l~~~~~~~~~~~lA~GiDp~k~ 138 (405)
-|.|.+||||....| .-|.++| +|- .-+|++ +.++......+|.+++|+-+
T Consensus 15 Y~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l~IsfD-- 92 (558)
T COG0143 15 YPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKALNISFD-- 92 (558)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccc--
Confidence 366999999987655 2244444 221 124544 45666777888999999876
Q ss_pred EEEEcCCchhhhHH
Q 015509 139 SVFVQSHVRAHVEL 152 (405)
Q Consensus 139 ~if~qS~v~~h~el 152 (405)
.|....-+.|.++
T Consensus 93 -~F~rTt~~~h~~~ 105 (558)
T COG0143 93 -NFIRTTSPEHKEL 105 (558)
T ss_pred -ccccCCCHHHHHH
Confidence 5666666656543
No 72
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=82.17 E-value=0.97 Score=45.76 Aligned_cols=58 Identities=31% Similarity=0.364 Sum_probs=32.1
Q ss_pred cccceeccccchHH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCC
Q 015509 201 YQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 277 (405)
Q Consensus 201 ~~adlVpvG~DQ~~---hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 277 (405)
+.+|+.+.|.||.. |..+..-++ .+| ...|..++.. ..+... +| +|||||.
T Consensus 251 ~p~d~~~~GkDii~~wf~~~~~~~~~-----~~~--------------~~p~~~~~~h--g~~~~~-~g-~KmSKS~--- 304 (338)
T cd00818 251 FPADFILEGSDQTRGWFYSLLLLSTA-----LFG--------------KAPYKNVIVH--GFVLDE-DG-RKMSKSL--- 304 (338)
T ss_pred CCCeEEeecchHHhHHHHHHHHHHHH-----hcC--------------CCccceEEEE--eeEECC-CC-CCCCCCC---
Confidence 34789999999974 333332222 122 1122333322 244333 57 6999997
Q ss_pred CceeecC
Q 015509 278 QSRINLL 284 (405)
Q Consensus 278 ~s~I~L~ 284 (405)
+|.|.+.
T Consensus 305 gn~i~~~ 311 (338)
T cd00818 305 GNYVDPQ 311 (338)
T ss_pred CCcCCHH
Confidence 6788663
No 73
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=81.71 E-value=4.7 Score=45.73 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=37.2
Q ss_pred CceEEEeeCCC--CcchhhhHHHHH-----HHHHHhc----c--C---CCc------------Ch-HHHHHHHHHHHHHH
Q 015509 78 KKRIVSGVQPT--GSIHLGNYLGAI-----KNWIALQ----I--T---LPY------------DT-QQLSKATRETAAIY 128 (405)
Q Consensus 78 ~~~i~sGi~PT--G~lHLGnylg~i-----~~~~~lQ----i--t---~~~------------d~-~~l~~~~~~~~~~~ 128 (405)
++.+++|. |+ |.+|+||.++.+ ..+.+++ + . -.+ ++ +-..+++..+...+
T Consensus 33 ~~~i~~~p-Py~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~ 111 (805)
T PRK00390 33 KYYVLDMF-PYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQL 111 (805)
T ss_pred CEEEEccC-CCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 57787886 77 999999998743 3455555 1 0 011 22 22455566778888
Q ss_pred HHcCCCCC
Q 015509 129 LACGIDNS 136 (405)
Q Consensus 129 lA~GiDp~ 136 (405)
.++|+..+
T Consensus 112 ~~lGi~~D 119 (805)
T PRK00390 112 KSLGFSYD 119 (805)
T ss_pred HHhCCccc
Confidence 89999655
No 74
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=81.42 E-value=8.4 Score=42.49 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=33.4
Q ss_pred ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCcee
Q 015509 202 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 281 (405)
Q Consensus 202 ~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 281 (405)
.+|+...|.||..++-+- =.-+-...| ++.|..++... .+. + +| +|||||. +|.|
T Consensus 254 p~~~~~~GkDii~fH~i~---wpa~l~~~~--------------~~~p~~v~~hg--~l~-~-eg-~KMSKS~---GN~i 308 (648)
T PRK12267 254 PADVHLVGKDILRFHAIY---WPIMLMALG--------------LPLPKKVFAHG--WWL-M-KD-GKMSKSK---GNVV 308 (648)
T ss_pred ccceEEEeeeecchhHHH---HHHHHHhCC--------------CCCCcEEEecc--eEE-E-CC-ceecccC---Cccc
Confidence 367888999998744321 011110112 56677666541 332 2 56 7999997 6788
Q ss_pred ecC
Q 015509 282 NLL 284 (405)
Q Consensus 282 ~L~ 284 (405)
...
T Consensus 309 ~p~ 311 (648)
T PRK12267 309 DPE 311 (648)
T ss_pred CHH
Confidence 654
No 75
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=80.84 E-value=0.76 Score=48.71 Aligned_cols=60 Identities=27% Similarity=0.343 Sum_probs=35.7
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCce
Q 015509 201 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 280 (405)
Q Consensus 201 ~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 280 (405)
+..|+...|.||...+-.. .+|.-+. .| .+.|..++.. ..+. + +| +|||||. +|.
T Consensus 253 ~~~D~~~~G~D~~~~h~~~-~~a~~~a--~~--------------~~~p~~~~~~--g~v~-~-~G-~KMSKS~---GN~ 307 (511)
T PRK11893 253 WPADVHLIGKDILRFHAVY-WPAFLMA--AG--------------LPLPKRVFAH--GFLT-L-DG-EKMSKSL---GNV 307 (511)
T ss_pred CCCcceEecccccccchhH-HHHHHHh--CC--------------CCCCCEEEee--ccEE-E-CC-eeecccC---CcE
Confidence 3579999999998843211 1222211 12 2456655554 2443 4 67 6999997 688
Q ss_pred eecCC
Q 015509 281 INLLD 285 (405)
Q Consensus 281 I~L~D 285 (405)
|.+.|
T Consensus 308 i~~~d 312 (511)
T PRK11893 308 IDPFD 312 (511)
T ss_pred EcHHH
Confidence 87743
No 76
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=80.26 E-value=6.2 Score=39.45 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=31.7
Q ss_pred CCCcchhhhHHHHH-----HHHHHhc---c------CCCc------------ChHH-HHHHHHHHHHHHHHcCCCCCc
Q 015509 87 PTGSIHLGNYLGAI-----KNWIALQ---I------TLPY------------DTQQ-LSKATRETAAIYLACGIDNSK 137 (405)
Q Consensus 87 PTG~lHLGnylg~i-----~~~~~lQ---i------t~~~------------d~~~-l~~~~~~~~~~~lA~GiDp~k 137 (405)
|+|.+||||..+.+ ..|.+++ + +-.+ ++++ ...+...+.+++.++|++++.
T Consensus 11 ~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 88 (319)
T cd00814 11 VNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFDY 88 (319)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 34999999998843 4455554 1 1111 2333 344456677888999998874
No 77
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=80.21 E-value=1.3 Score=51.65 Aligned_cols=71 Identities=23% Similarity=0.353 Sum_probs=43.3
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCccccCCCCCCc
Q 015509 201 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 279 (405)
Q Consensus 201 ~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 279 (405)
|-+|+...|.||. ++=++|-++.-+... | ..| ..++.. .+|..- +| +|||||. +|
T Consensus 490 ~P~d~~~~G~Dii-~~W~a~~l~~~~~~~-~---------------~~Pfk~V~~h--G~v~d~-~G-~KMSKSk---GN 545 (1052)
T PRK14900 490 YPTSVMETGHDII-FFWVARMMMMGLHFM-G---------------EVPFRTVYLH--PMVRDE-KG-QKMSKTK---GN 545 (1052)
T ss_pred CCchhhcccccHH-hHHHHHHHHHHHHhc-C---------------CCccceeEec--ccEECC-CC-CCccCCC---CC
Confidence 4579999999998 456777776655421 1 234 333332 255443 56 6999997 67
Q ss_pred eeecCC-----CHHHHHHHhh
Q 015509 280 RINLLD-----PKDVIANKIK 295 (405)
Q Consensus 280 ~I~L~D-----spe~I~kKI~ 295 (405)
.|...| .+|.++==+.
T Consensus 546 vIdP~dvIe~yGaDalR~~L~ 566 (1052)
T PRK14900 546 VIDPLVITEQYGADALRFTLA 566 (1052)
T ss_pred CCCHHHHHHHhCcHHHHHHHH
Confidence 886544 3445554444
No 78
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=80.15 E-value=1.1 Score=46.05 Aligned_cols=60 Identities=28% Similarity=0.351 Sum_probs=33.5
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCccccCCCCCCc
Q 015509 201 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 279 (405)
Q Consensus 201 ~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 279 (405)
+.+|+...|.||...+-.. .++.-.- ..| ..| ..++.. ..+.++ +| +|||||. +|
T Consensus 295 ~p~d~~~~G~D~~~~h~~~-~l~~~~~-~~g---------------~~p~~~v~~h--g~v~~~-~g-~KMSKS~---Gn 350 (382)
T cd00817 295 YPTSLLVTGHDIIFFWVAR-MIMRGLK-LTG---------------KLPFKEVYLH--GLVRDE-DG-RKMSKSL---GN 350 (382)
T ss_pred CCCCeeeeecCcCchHHHH-HHHHHHH-hhC---------------CCchHHeEee--eeEECC-CC-CCccccC---CC
Confidence 3579999999997544222 3333221 112 223 222222 255555 56 6999997 67
Q ss_pred eeecC
Q 015509 280 RINLL 284 (405)
Q Consensus 280 ~I~L~ 284 (405)
.|.+.
T Consensus 351 ~v~~~ 355 (382)
T cd00817 351 VIDPL 355 (382)
T ss_pred CCCHH
Confidence 88663
No 79
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=79.96 E-value=1.2 Score=48.21 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=41.5
Q ss_pred ceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeec
Q 015509 204 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 283 (405)
Q Consensus 204 dlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L 283 (405)
-+-.+|.||..|+.-...++..++ ++.|.-+..- .-++-.+ .|||||. ++.|.+
T Consensus 330 iI~V~g~~q~~h~~~v~~~l~~lG------------------~~~~~~l~h~----~~~~V~~-~kmSkr~---Gn~V~~ 383 (566)
T TIGR00456 330 MIYVWGSDHHLHIAQFFAILEKLG------------------FYKKKELIHL----NFGMVPL-GSMKTRR---GNVISL 383 (566)
T ss_pred EEEEecCcHHHHHHHHHHHHHHcC------------------CCCCCceEEE----EEEEEEC-CCCCccC---CceeeH
Confidence 345799999999999999998875 3334322211 1111123 5999997 789999
Q ss_pred CCCHHHHHH
Q 015509 284 LDPKDVIAN 292 (405)
Q Consensus 284 ~Dspe~I~k 292 (405)
.|=.++..+
T Consensus 384 ~dll~~~~~ 392 (566)
T TIGR00456 384 DNLLDEASK 392 (566)
T ss_pred HHHHHHHHH
Confidence 865555444
No 80
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=79.67 E-value=0.92 Score=51.96 Aligned_cols=58 Identities=31% Similarity=0.389 Sum_probs=34.1
Q ss_pred cccceeccccchHH-HHHHHHHHHHHHhhh--hCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCC
Q 015509 201 YQSDFVPVGEDQKQ-HLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 277 (405)
Q Consensus 201 ~~adlVpvG~DQ~~-hleLtRdia~r~n~~--~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 277 (405)
|-+|+...|.||.. |+-... |++. ++. -+.|..++.. ..+.. +| +|||||.
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~-----~~~~a~~~~-------------~~~Pk~v~~h--G~vl~--~G-~KMSKS~--- 582 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFI-----FNHVAIFPE-------------EKWPRGIVVN--GFVLL--EG-KKMSKSK--- 582 (897)
T ss_pred CCceEEEeeeccCccHHHHHH-----HHHHHhcCC-------------CccCcEEEEc--ceEEE--CC-ccccCcC---
Confidence 45799999999966 655442 3332 221 1335444433 23432 56 6999997
Q ss_pred CceeecC
Q 015509 278 QSRINLL 284 (405)
Q Consensus 278 ~s~I~L~ 284 (405)
+|.|...
T Consensus 583 GNvVdp~ 589 (897)
T PRK12300 583 GNVIPLR 589 (897)
T ss_pred CCCCCHH
Confidence 6787543
No 81
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=78.79 E-value=3.5 Score=46.74 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=40.3
Q ss_pred CCceEEEee-CCCCcchhhhHHH-----HHHHHHHhc---------------------cCCCcChHH-HHHHHHHHHHHH
Q 015509 77 VKKRIVSGV-QPTGSIHLGNYLG-----AIKNWIALQ---------------------ITLPYDTQQ-LSKATRETAAIY 128 (405)
Q Consensus 77 ~~~~i~sGi-~PTG~lHLGnylg-----~i~~~~~lQ---------------------it~~~d~~~-l~~~~~~~~~~~ 128 (405)
.|++|..-+ -|||.||+||..+ ++..+.++| +.+.-+|.. ...++.++...+
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~ql 113 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQL 113 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 456665555 4788888888664 346677777 111224433 466677777778
Q ss_pred HHcCCCCCceEEEE
Q 015509 129 LACGIDNSKASVFV 142 (405)
Q Consensus 129 lA~GiDp~k~~if~ 142 (405)
.++|+.-|=..-|.
T Consensus 114 k~lG~siDW~Ref~ 127 (814)
T COG0495 114 KSLGFSIDWRREFA 127 (814)
T ss_pred HHhCCcccccccee
Confidence 88887655444443
No 82
>PLN02610 probable methionyl-tRNA synthetase
Probab=78.66 E-value=8.4 Score=43.78 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=41.5
Q ss_pred CceEEEee-CCCCcchhhhHHHH-H-----HHHHHhc------cCC---------------CcChHH-HHHHHHHHHHHH
Q 015509 78 KKRIVSGV-QPTGSIHLGNYLGA-I-----KNWIALQ------ITL---------------PYDTQQ-LSKATRETAAIY 128 (405)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylg~-i-----~~~~~lQ------it~---------------~~d~~~-l~~~~~~~~~~~ 128 (405)
++.|-|.+ -|+|.+||||..+. + ..|.+++ ++= ..+|++ +.++.......|
T Consensus 18 ~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~ 97 (801)
T PLN02610 18 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVY 97 (801)
T ss_pred CEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34444443 34599999998862 3 4455555 110 123333 344455667788
Q ss_pred HHcCCCCCceEEEEcCCchhhhHHH
Q 015509 129 LACGIDNSKASVFVQSHVRAHVELM 153 (405)
Q Consensus 129 lA~GiDp~k~~if~qS~v~~h~el~ 153 (405)
.++||+.+ .|....-++|.+..
T Consensus 98 ~~l~i~~D---~f~rT~~~~h~~~v 119 (801)
T PLN02610 98 DWFDISFD---KFGRTSTPQQTEIC 119 (801)
T ss_pred HHcCCccc---cCccCCCHHHHHHH
Confidence 99999987 34444455565443
No 83
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=78.28 E-value=1.4 Score=50.10 Aligned_cols=58 Identities=28% Similarity=0.375 Sum_probs=32.7
Q ss_pred cccceeccccchHH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCC
Q 015509 201 YQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 277 (405)
Q Consensus 201 ~~adlVpvG~DQ~~---hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 277 (405)
+-+|+...|.||.. |..+-.-++ + +| ...|..++.. .++... +| +|||||.
T Consensus 563 ~P~d~~i~G~Di~r~Wf~~~~~~~~~--~---~~--------------~~P~k~v~~h--G~vl~~-~G-~KMSKSk--- 616 (861)
T TIGR00392 563 FPADFILEGSDQTRGWFYSSLAIGTA--L---FG--------------QAPYKNVITH--GFTLDE-KG-RKMSKSL--- 616 (861)
T ss_pred CCceEEEEecchhccHHHHHHHHHHH--H---cC--------------CCChHhhEec--ceEECC-CC-CCcCCCC---
Confidence 45799999999965 222222222 1 12 1223444432 245443 56 6999997
Q ss_pred CceeecC
Q 015509 278 QSRINLL 284 (405)
Q Consensus 278 ~s~I~L~ 284 (405)
+|.|...
T Consensus 617 GNvI~p~ 623 (861)
T TIGR00392 617 GNVVDPL 623 (861)
T ss_pred CCCCCHH
Confidence 6777653
No 84
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=78.05 E-value=1.1 Score=51.44 Aligned_cols=71 Identities=27% Similarity=0.303 Sum_probs=40.5
Q ss_pred cccceeccccchHH-HHHHHHHHHHHHhhhh--CCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCC
Q 015509 201 YQSDFVPVGEDQKQ-HLELTRELAERVNYLY--GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 277 (405)
Q Consensus 201 ~~adlVpvG~DQ~~-hleLtRdia~r~n~~~--g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 277 (405)
|-+|+...|.||.+ |+.+. + |++.. +. . +-|..++.. ..+.. +| +|||||.
T Consensus 572 yP~D~~~~GkDii~~H~~~~--i---~~~~a~~~~-----------~--~~Pk~i~~~--G~vl~--~G-~KMSKSl--- 625 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFY--I---FHHVAIFPE-----------K--FWPRGIVVN--GYVML--EG-KKMSKSK--- 625 (938)
T ss_pred CCceEEEEeeccccchHHHH--H---HHHHHcCCc-----------c--ccCcEEEEe--ceEEe--CC-ccccCcC---
Confidence 45799999999976 66544 2 22221 11 0 125444433 13332 56 6999997
Q ss_pred CceeecCC-----CHHHHHHHhhcc
Q 015509 278 QSRINLLD-----PKDVIANKIKRC 297 (405)
Q Consensus 278 ~s~I~L~D-----spe~I~kKI~kA 297 (405)
+|.|.+.| .+|.++==+..+
T Consensus 626 GNvI~p~d~i~~yGaDalRl~Ll~~ 650 (938)
T TIGR00395 626 GNVLTLEQAVEKFGADVARLYIADA 650 (938)
T ss_pred CCCCCHHHHHHHcChHHHHHHHHhc
Confidence 67886643 355555555544
No 85
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=77.13 E-value=1.5 Score=46.45 Aligned_cols=79 Identities=22% Similarity=0.191 Sum_probs=44.7
Q ss_pred HHHhhhhhccccceeccccch-HHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcc
Q 015509 192 VLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKM 270 (405)
Q Consensus 192 vLQAADIl~~~adlVpvG~DQ-~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KM 270 (405)
..|+..+|=...|+..+|.|. .+|++--.-.+.-+ +|. +.+...+.. .+| .+ +| +||
T Consensus 209 sam~~~~lg~~~Dih~gG~Dl~fpHhene~aqs~a~---~g~--------------~~~~~~~h~--g~v-~~-~g-~KM 266 (465)
T TIGR00435 209 SAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQSEAA---FGK--------------QLAKYWMHN--GFL-MI-DN-EKM 266 (465)
T ss_pred HHHHHHhcCCCceeeccccccccchHHHHHHHHHHh---cCC--------------CCCcEEEEe--eEE-Ee-cC-ccc
Confidence 345666666678999999998 46775544333332 331 113332322 133 34 66 699
Q ss_pred ccCCCCCCceeecCC-----CHHHHHHHhh
Q 015509 271 SKSAPSDQSRINLLD-----PKDVIANKIK 295 (405)
Q Consensus 271 SKS~p~~~s~I~L~D-----spe~I~kKI~ 295 (405)
|||. +|.|.+.| +++.++==+.
T Consensus 267 SKS~---GN~i~~~dll~~~~~dalR~~ll 293 (465)
T TIGR00435 267 SKSL---GNFFTVRDVLKNYDPEILRYFLL 293 (465)
T ss_pred cccC---CCcCCHHHHHHHCCHHHHHHHHH
Confidence 9997 57776643 3455554443
No 86
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=75.47 E-value=15 Score=41.72 Aligned_cols=61 Identities=25% Similarity=0.196 Sum_probs=34.8
Q ss_pred ccceeccccchHHHHHHHHHHHHHHhhh--hCCccccccCCCCCccccCCcc---ccCCCCcccccCCCCCCccccCCCC
Q 015509 202 QSDFVPVGEDQKQHLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEP---LIPPAGARVMSLTDGLSKMSKSAPS 276 (405)
Q Consensus 202 ~adlVpvG~DQ~~hleLtRdia~r~n~~--~g~~~~~~~g~~~~~~f~~P~~---l~~~~~~~l~sL~dg~~KMSKS~p~ 276 (405)
=.|+-.+|.|....+-| --+|+++ |.... .+..++ |++. .+|.+- +| +|||||.
T Consensus 526 PVD~yigG~ehavlHLl----y~rF~Hkal~d~g~-----------~p~~epf~~L~~q--GmVl~~-~g-~KMSKSK-- 584 (814)
T COG0495 526 PVDLYIGGIEHAVLHLL----YFRFFHKALFDEGL-----------VPKDEPFKKLITQ--GMVLGE-EG-EKMSKSK-- 584 (814)
T ss_pred ChheeecchhHHHHHHH----HHHHHHHHhcccCc-----------CCCccchhhhhcc--ceEEec-CC-Ccccccc--
Confidence 48999999999876543 2345554 22111 222221 3333 255443 45 6999997
Q ss_pred CCceeecC
Q 015509 277 DQSRINLL 284 (405)
Q Consensus 277 ~~s~I~L~ 284 (405)
+|.|.+.
T Consensus 585 -gN~v~p~ 591 (814)
T COG0495 585 -GNVVDPE 591 (814)
T ss_pred -CCCCCHH
Confidence 5777543
No 87
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=74.49 E-value=2.3 Score=44.13 Aligned_cols=73 Identities=25% Similarity=0.197 Sum_probs=43.9
Q ss_pred hhhhHHHhhhhhccccceeccccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCC
Q 015509 188 LTYPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 266 (405)
Q Consensus 188 l~YPvLQAADIl~~~adlVpvG~DQ~-~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg 266 (405)
-+=..-|+..+|--.-|+--+|.|-. +|+|- ++|... ..+|.. +-+...+.. -+... +|
T Consensus 200 HiECsam~~~~lg~~~DIH~GG~DL~FPHHen--eiaq~~-a~~g~~-------------~~~~~w~H~---g~l~~-~G 259 (384)
T PRK12418 200 HIECSAIALNRLGSGFDIQGGGSDLIFPHHEF--SAAHAE-AATGER-------------RFARHYVHA---GMIGL-DG 259 (384)
T ss_pred HHHHHHHHHHHcCCCcccccCccccccchhHh--HHHHHH-HhcCCC-------------CcceEEEEC---CEECC-CC
Confidence 34456788888877799999999965 66654 344432 123310 123344443 22333 66
Q ss_pred CCccccCCCCCCceeecC
Q 015509 267 LSKMSKSAPSDQSRINLL 284 (405)
Q Consensus 267 ~~KMSKS~p~~~s~I~L~ 284 (405)
+|||||. +|.|.+.
T Consensus 260 -~KMSKSl---GN~i~~~ 273 (384)
T PRK12418 260 -EKMSKSR---GNLVFVS 273 (384)
T ss_pred -CcccCcC---CCcCCHH
Confidence 6999997 5777664
No 88
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=74.23 E-value=2.1 Score=48.96 Aligned_cols=61 Identities=26% Similarity=0.335 Sum_probs=37.5
Q ss_pred ccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCccccCCCCCC
Q 015509 200 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 278 (405)
Q Consensus 200 ~~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 278 (405)
+|-+|+...|.||... =++|-++..+.. .| ..| ..++.. .++... +| +|||||. +
T Consensus 471 ~~P~d~~~~G~Dii~~-W~a~~~~~~~~~-~~---------------~~Pfk~v~~h--G~v~d~-~G-~KMSKSl---G 526 (874)
T PRK05729 471 FYPTSVLVTGFDIIFF-WVARMIMMGLHF-TG---------------QVPFKDVYIH--GLVRDE-QG-RKMSKSK---G 526 (874)
T ss_pred cCCcccccccccccch-HHHHHHHHHHHh-cC---------------CCchhheEEe--eeEECC-CC-CCcccCC---C
Confidence 3567999999999874 566666554321 11 345 233322 256554 56 6999997 6
Q ss_pred ceeecC
Q 015509 279 SRINLL 284 (405)
Q Consensus 279 s~I~L~ 284 (405)
|.|...
T Consensus 527 NvIdP~ 532 (874)
T PRK05729 527 NVIDPL 532 (874)
T ss_pred CCCCHH
Confidence 788654
No 89
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=73.76 E-value=9.1 Score=40.95 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=32.3
Q ss_pred CCCcchhhhHHHHH-----HHHHHhc------cC---CCc------------ChHH-HHHHHHHHHHHHHHcCCCCCc
Q 015509 87 PTGSIHLGNYLGAI-----KNWIALQ------IT---LPY------------DTQQ-LSKATRETAAIYLACGIDNSK 137 (405)
Q Consensus 87 PTG~lHLGnylg~i-----~~~~~lQ------it---~~~------------d~~~-l~~~~~~~~~~~lA~GiDp~k 137 (405)
|+|.+||||....+ ..+.+++ ++ -.+ ++.+ ..++.....+++.++|++++.
T Consensus 10 ~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 87 (530)
T TIGR00398 10 ANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFDR 87 (530)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 68999999988643 4455554 11 111 2333 344456677889999998874
No 90
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=73.57 E-value=16 Score=40.60 Aligned_cols=27 Identities=33% Similarity=0.196 Sum_probs=22.8
Q ss_pred hHHHhhhhhccccceeccccch-HHHHH
Q 015509 191 PVLMASDILLYQSDFVPVGEDQ-KQHLE 217 (405)
Q Consensus 191 PvLQAADIl~~~adlVpvG~DQ-~~hle 217 (405)
...|+.|||-...|+--+|.|- -||+|
T Consensus 257 Csam~~~~lg~~~DIh~gG~DL~FPHHe 284 (651)
T PTZ00399 257 CSAMASNILGDPIDIHSGGIDLKFPHHD 284 (651)
T ss_pred HHHHHHHHcCCcceeeccCCCCCCCcch
Confidence 4589999999999999999998 46653
No 91
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=72.44 E-value=15 Score=38.86 Aligned_cols=51 Identities=16% Similarity=0.289 Sum_probs=30.4
Q ss_pred CCCcchhhhHHHHH-----HHHHHhc------c---CCCc------------ChHH-HHHHHHHHHHHHHHcCCCCCc
Q 015509 87 PTGSIHLGNYLGAI-----KNWIALQ------I---TLPY------------DTQQ-LSKATRETAAIYLACGIDNSK 137 (405)
Q Consensus 87 PTG~lHLGnylg~i-----~~~~~lQ------i---t~~~------------d~~~-l~~~~~~~~~~~lA~GiDp~k 137 (405)
|+|.+||||..+.+ ..+.+++ + +-.+ ++.+ .+.+.....+++.++|++++.
T Consensus 12 ~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D~ 89 (511)
T PRK11893 12 PNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYDD 89 (511)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 45999999976643 3444443 1 1111 2222 344456677888899998873
No 92
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=71.32 E-value=1.6 Score=50.35 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.0
Q ss_pred hccccceeccccchHH
Q 015509 199 LLYQSDFVPVGEDQKQ 214 (405)
Q Consensus 199 l~~~adlVpvG~DQ~~ 214 (405)
+.+-+|+...|.||..
T Consensus 580 ~~~PaD~~~eG~Di~r 595 (961)
T PRK13804 580 LKWPADLYLEGSDQHR 595 (961)
T ss_pred cCCCceEEEEEccccc
Confidence 4466899999999974
No 93
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=71.22 E-value=8.1 Score=42.61 Aligned_cols=58 Identities=17% Similarity=0.195 Sum_probs=34.1
Q ss_pred eEEEeeCC--CCcchhhhHHHHH-----HHHHHhc------cCC---Cc------------ChHH-HHHHHHHHHHHHHH
Q 015509 80 RIVSGVQP--TGSIHLGNYLGAI-----KNWIALQ------ITL---PY------------DTQQ-LSKATRETAAIYLA 130 (405)
Q Consensus 80 ~i~sGi~P--TG~lHLGnylg~i-----~~~~~lQ------it~---~~------------d~~~-l~~~~~~~~~~~lA 130 (405)
.++|.=-| +|.+||||..+.+ ..|.+++ ++- .+ +++. +.++......+|.+
T Consensus 6 ~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~ 85 (648)
T PRK12267 6 FYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKK 85 (648)
T ss_pred EEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 33444444 5999999987643 4565565 221 11 2222 34445566778889
Q ss_pred cCCCCCc
Q 015509 131 CGIDNSK 137 (405)
Q Consensus 131 ~GiDp~k 137 (405)
+|++++.
T Consensus 86 lgI~~D~ 92 (648)
T PRK12267 86 LDISYDK 92 (648)
T ss_pred cCCCCCC
Confidence 9998873
No 94
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=71.10 E-value=2.4 Score=46.35 Aligned_cols=60 Identities=32% Similarity=0.388 Sum_probs=30.1
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCce
Q 015509 201 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 280 (405)
Q Consensus 201 ~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 280 (405)
|-+|+..-|.||.... +.+-+....- .++. ..| +..+++. ++... +| +|||||. +|.
T Consensus 513 ~P~D~~~~G~D~~~~W-~~~~l~~~~~-l~~~-----------~pf--k~v~~hG---~vld~-~G-~KMSKS~---GNv 569 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGW-FQSSLFLSVA-LFGK-----------EPF--KKVITHG---FVLDE-DG-RKMSKSK---GNV 569 (601)
T ss_dssp SSBSEEEEEGGGTTTH-HHHHHHHHHH-HSSS-----------TSB--SEEEEE-----EEET-TS-SB-BTTT---TB-
T ss_pred CCcccccCCccchhhH-HHHhHhhccc-cccC-----------Cch--heeeecc---ccccc-ce-eecccCC---Ccc
Confidence 4589999999997643 2222222111 1221 123 3333332 56554 67 7999997 577
Q ss_pred eec
Q 015509 281 INL 283 (405)
Q Consensus 281 I~L 283 (405)
|..
T Consensus 570 i~p 572 (601)
T PF00133_consen 570 IDP 572 (601)
T ss_dssp -BH
T ss_pred cCH
Confidence 743
No 95
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=70.05 E-value=3.6 Score=46.50 Aligned_cols=60 Identities=28% Similarity=0.371 Sum_probs=33.2
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCccccCCCCCCc
Q 015509 201 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 279 (405)
Q Consensus 201 ~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 279 (405)
+-+|+...|.||... -+.+-++...- .+| ..| ..++.. ..+... +| +|||||. +|
T Consensus 485 ~P~d~~~~G~Di~~~-w~~~~l~~~~~-~~~---------------~~Pf~~v~~h--g~v~~~-~G-~KMSKS~---GN 540 (800)
T PRK13208 485 FPMDLRPQGHDIIRT-WLFYTILRAYL-LTG---------------KLPWKNIMIS--GMVLDP-DG-KKMSKSK---GN 540 (800)
T ss_pred CCceEEEeecchhhh-HHHHHHHHHHH-hcC---------------CCCcceEEEe--eEEECC-CC-CCCCCCC---CC
Confidence 347999999999852 23333433221 122 123 233322 255444 56 6999997 67
Q ss_pred eeecC
Q 015509 280 RINLL 284 (405)
Q Consensus 280 ~I~L~ 284 (405)
.|...
T Consensus 541 ~i~p~ 545 (800)
T PRK13208 541 VVTPE 545 (800)
T ss_pred CCCHH
Confidence 77653
No 96
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=69.38 E-value=2.9 Score=41.84 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=32.8
Q ss_pred cceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceee
Q 015509 203 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 282 (405)
Q Consensus 203 adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 282 (405)
.++..+|.|+..++-+.= .|--+. .| .+.|..++... .+ .+ +| +|||||. ++.|.
T Consensus 236 ~~v~~~G~D~~~fh~~~~-pa~l~~--~~--------------~~~~~~~~~~~--~~-~~-~g-~kmSkS~---gn~i~ 290 (319)
T cd00814 236 ELVHFIGKDIIRFHAIYW-PAMLLG--AG--------------LPLPTRIVAHG--YL-TV-EG-KKMSKSR---GNVVD 290 (319)
T ss_pred ceEEEEeechhhhhHHHH-HHHHHh--CC--------------CCCCcEeeeee--eE-EE-CC-eeecccC---CcccC
Confidence 578899999998753311 111111 11 34565555431 32 33 56 6999997 67886
Q ss_pred cC
Q 015509 283 LL 284 (405)
Q Consensus 283 L~ 284 (405)
+.
T Consensus 291 ~~ 292 (319)
T cd00814 291 PD 292 (319)
T ss_pred HH
Confidence 63
No 97
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=68.86 E-value=9.3 Score=43.65 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=34.5
Q ss_pred ceEEEeeCCC--CcchhhhHHHHH-----HHHHHhc----c--C---CCc------------Ch-HHHHHHHHHHHHHHH
Q 015509 79 KRIVSGVQPT--GSIHLGNYLGAI-----KNWIALQ----I--T---LPY------------DT-QQLSKATRETAAIYL 129 (405)
Q Consensus 79 ~~i~sGi~PT--G~lHLGnylg~i-----~~~~~lQ----i--t---~~~------------d~-~~l~~~~~~~~~~~l 129 (405)
+.+.+| =|+ |.+|+||.++.+ ..|.+++ + + -.+ ++ +-..+++..+...+.
T Consensus 31 ~~v~~~-pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~ 109 (842)
T TIGR00396 31 YYILDM-FPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQ 109 (842)
T ss_pred EEEEcC-CCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 456555 444 999999988743 4455555 0 0 011 12 224556677788888
Q ss_pred HcCCCCC
Q 015509 130 ACGIDNS 136 (405)
Q Consensus 130 A~GiDp~ 136 (405)
++|+..+
T Consensus 110 ~lG~~~D 116 (842)
T TIGR00396 110 ALGFSYD 116 (842)
T ss_pred HhCCccc
Confidence 9997544
No 98
>PLN02563 aminoacyl-tRNA ligase
Probab=68.77 E-value=25 Score=40.83 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=34.9
Q ss_pred CceEEEee-CCCCc-chhhhHHHH-----HHHHHHhc----cCC-----Cc------------Ch-HHHHHHHHHHHHHH
Q 015509 78 KKRIVSGV-QPTGS-IHLGNYLGA-----IKNWIALQ----ITL-----PY------------DT-QQLSKATRETAAIY 128 (405)
Q Consensus 78 ~~~i~sGi-~PTG~-lHLGnylg~-----i~~~~~lQ----it~-----~~------------d~-~~l~~~~~~~~~~~ 128 (405)
++.|++|+ -|+|. +|+||..+. +..|.+++ +-. .+ .+ +...+++..+.+.+
T Consensus 111 k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~ 190 (963)
T PLN02563 111 KFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQL 190 (963)
T ss_pred CEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHH
Confidence 35777776 34597 999998863 34466665 110 11 11 12345566777888
Q ss_pred HHcCCCC
Q 015509 129 LACGIDN 135 (405)
Q Consensus 129 lA~GiDp 135 (405)
..+|+..
T Consensus 191 ~~lG~s~ 197 (963)
T PLN02563 191 KSLGFSY 197 (963)
T ss_pred HHhCcEe
Confidence 8899643
No 99
>PLN02943 aminoacyl-tRNA ligase
Probab=68.26 E-value=4 Score=47.19 Aligned_cols=86 Identities=23% Similarity=0.362 Sum_probs=47.5
Q ss_pred chhhhhhHHHhhhh-hccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-c-cccCCCCcccc
Q 015509 185 VALLTYPVLMASDI-LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-E-PLIPPAGARVM 261 (405)
Q Consensus 185 ~g~l~YPvLQAADI-l~~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P-~-~l~~~~~~~l~ 261 (405)
+..+.||-....+. .+|-+|+...|.||. .+=++|-++.-.. ..| +.| . .+++. .+.
T Consensus 518 ~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii-~fW~a~m~~~~~~-~~~---------------~~Pf~~v~~hg---~v~ 577 (958)
T PLN02943 518 FSTLGWPDVSAEDFKKFYPTTVLETGHDIL-FFWVARMVMMGIE-FTG---------------TVPFSYVYLHG---LIR 577 (958)
T ss_pred HHhcCCCccChHHHhccCCCeEEEEeehHH-HHHHHHHHHhhhh-hcC---------------CCChheEEEec---cEE
Confidence 34444664322222 235579999999998 5667776663221 111 234 2 22222 444
Q ss_pred cCCCCCCccccCCCCCCceeecCC-----CHHHHHHHhh
Q 015509 262 SLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIK 295 (405)
Q Consensus 262 sL~dg~~KMSKS~p~~~s~I~L~D-----spe~I~kKI~ 295 (405)
.. +| +|||||. +|.|...| .+|.++-=+.
T Consensus 578 ~~-~G-~KMSKS~---GN~i~p~~~i~~ygaDalR~~l~ 611 (958)
T PLN02943 578 DS-QG-RKMSKTL---GNVIDPLDTIKEFGTDALRFTLA 611 (958)
T ss_pred CC-CC-CcccCcC---CCCCCHHHHHHhcCChHHHHHHH
Confidence 43 56 6999997 67886543 3555555444
No 100
>PLN02843 isoleucyl-tRNA synthetase
Probab=67.14 E-value=3.4 Score=47.82 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.6
Q ss_pred hccccceeccccchHH
Q 015509 199 LLYQSDFVPVGEDQKQ 214 (405)
Q Consensus 199 l~~~adlVpvG~DQ~~ 214 (405)
+.+-+|+...|.||..
T Consensus 561 ~~~PaDl~~eG~Di~r 576 (974)
T PLN02843 561 LSYPADLYLEGSDQHR 576 (974)
T ss_pred cCCCceeeeeeccccc
Confidence 4566999999999987
No 101
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=66.79 E-value=4.2 Score=46.40 Aligned_cols=61 Identities=31% Similarity=0.400 Sum_probs=35.6
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCccccCCCCCCc
Q 015509 201 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 279 (405)
Q Consensus 201 ~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 279 (405)
|-+|+...|.||.... ++|-++.-.- ..| +.| ..++.. ..+... +| +|||||. +|
T Consensus 477 ~P~d~~~~G~Dii~fw-~~~~~~~~~~-~~~---------------~~Pfk~v~~h--G~v~d~-~G-~KMSKS~---GN 532 (861)
T TIGR00422 477 YPTDLLVTGYDIIFFW-VARMIFRSLA-LTG---------------QVPFKEVYIH--GLVRDE-QG-RKMSKSL---GN 532 (861)
T ss_pred CCcceeecchhhhhHH-HHHHHHHHHH-hcC---------------CCchheEEEe--eEEECC-CC-CCCCcCC---CC
Confidence 5689999999997654 4455543221 111 234 333322 255543 56 6999997 57
Q ss_pred eeecCC
Q 015509 280 RINLLD 285 (405)
Q Consensus 280 ~I~L~D 285 (405)
.|...|
T Consensus 533 ~i~p~~ 538 (861)
T TIGR00422 533 VIDPLD 538 (861)
T ss_pred CCCHHH
Confidence 776543
No 102
>PLN02959 aminoacyl-tRNA ligase
Probab=66.73 E-value=4.6 Score=47.32 Aligned_cols=59 Identities=29% Similarity=0.308 Sum_probs=33.4
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhh--hCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCC
Q 015509 201 YQSDFVPVGEDQKQHLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 278 (405)
Q Consensus 201 ~~adlVpvG~DQ~~hleLtRdia~r~n~~--~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 278 (405)
|=+|+...|.||.... |+.-+ |++. +|. -+-|..++.. ..|. + +| +|||||. +
T Consensus 670 yP~Dl~~sG~Dii~~w-l~~~l---~~~~al~~~-------------~P~p~~v~v~--G~V~-~-~G-~KMSKSk---G 724 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNH-LTFAI---YNHTAIWAE-------------EHWPRGFRCN--GHLM-L-NS-EKMSKST---G 724 (1084)
T ss_pred CCCeEEEecccHHHHH-HHHHH---HHHHHhcCC-------------CCCCceEEEc--cEEe-c-CC-cCccccC---C
Confidence 5589999999997654 23333 2321 221 1224333322 1333 3 67 7999997 6
Q ss_pred ceeecC
Q 015509 279 SRINLL 284 (405)
Q Consensus 279 s~I~L~ 284 (405)
|.|.+.
T Consensus 725 NvI~p~ 730 (1084)
T PLN02959 725 NFLTLR 730 (1084)
T ss_pred CcCCHH
Confidence 777653
No 103
>PLN02660 pantoate--beta-alanine ligase
Probab=66.67 E-value=23 Score=35.44 Aligned_cols=167 Identities=19% Similarity=0.227 Sum_probs=90.9
Q ss_pred EeeCCC-CcchhhhHHHHHHHHHHhc----cCCCcChHHHHH------H---HHHHHHHHHHcCCCCCceEEEEcCCchh
Q 015509 83 SGVQPT-GSIHLGNYLGAIKNWIALQ----ITLPYDTQQLSK------A---TRETAAIYLACGIDNSKASVFVQSHVRA 148 (405)
Q Consensus 83 sGi~PT-G~lHLGnylg~i~~~~~lQ----it~~~d~~~l~~------~---~~~~~~~~lA~GiDp~k~~if~qS~v~~ 148 (405)
.|+=|| |.+|.||.- .|+.-.+.. +|+.-+|..+.. + ..+-++.+.++|+| .+|. |.
T Consensus 23 igfVpTmG~LH~GH~~-LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~GVD----~vf~----P~ 93 (284)
T PLN02660 23 IALVPTMGYLHEGHLS-LVRAARARADVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAALGVD----AVFN----PH 93 (284)
T ss_pred EEEEEcCchhhHHHHH-HHHHHHHhCCEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHcCCC----EEEC----CC
Confidence 589999 999999974 455554443 455434433321 1 23445567789988 2333 22
Q ss_pred hhHHHH------H--HhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhc--cccceeccccchHHHHHH
Q 015509 149 HVELMW------L--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL--YQSDFVPVGEDQKQHLEL 218 (405)
Q Consensus 149 h~el~w------~--L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~--~~adlVpvG~DQ~~hleL 218 (405)
..++|| . ....++++.+.+..- | ..-.|.|-= |....--|+ .++|....|.--.|-+.+
T Consensus 94 ~~emY~~~~~~~p~~~~~~v~~~~l~~~le--------G--~~RPghF~G-V~TVV~KLfniv~P~~a~FGeKD~QQl~v 162 (284)
T PLN02660 94 DLYVYVSCLEEGGAGHETWVRVERLEKGLC--------G--KSRPVFFRG-VATIVTKLFNIVEPDVAVFGKKDYQQWRV 162 (284)
T ss_pred hHHhcccccccCCCCcceEEeccccccccC--------C--CCCCccccc-HHHHHHHHHhccCCCEeeecchHHHHHHH
Confidence 333442 1 222233332222111 1 111222211 111111122 379999999999999999
Q ss_pred HHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhccc
Q 015509 219 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 298 (405)
Q Consensus 219 tRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~ 298 (405)
.|.+++.|| + |.-++.- +.+-- .||- =||+-+ .+|+++..+..-.|-++.
T Consensus 163 IrrmV~dL~------------------~--~v~I~~~--ptvRe-~dGL-A~SSRN------~yLs~~eR~~A~~l~~~L 212 (284)
T PLN02660 163 IRRMVRDLD------------------F--DIEVVGS--PIVRE-ADGL-AMSSRN------VRLSAEEREKALSISRSL 212 (284)
T ss_pred HHHHHHHcC------------------C--CceEEee--CceEC-CCCC-eecccc------ccCCHHHHHHHHHHHHHH
Confidence 999999987 2 3333322 22222 3663 788763 577777777777776655
Q ss_pred C
Q 015509 299 T 299 (405)
Q Consensus 299 T 299 (405)
+
T Consensus 213 ~ 213 (284)
T PLN02660 213 A 213 (284)
T ss_pred H
Confidence 4
No 104
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=66.46 E-value=3.9 Score=42.83 Aligned_cols=71 Identities=25% Similarity=0.238 Sum_probs=41.2
Q ss_pred hhhHHHhhhhhccccceeccccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCC
Q 015509 189 TYPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL 267 (405)
Q Consensus 189 ~YPvLQAADIl~~~adlVpvG~DQ~-~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~ 267 (405)
+=...|+..+|--.-|+.-+|.|-. +|+|- +||...- .+|+. +-+...+.. -.... +|
T Consensus 228 iECsam~~~~lg~~~Dih~GG~DLifpHhen--eiaq~~A-~~g~~-------------~~~~~w~H~---g~l~~-~G- 286 (411)
T TIGR03447 228 IECSAIATNRLGAGFDIQGGGSDLIFPHHEF--SAAHAEA-ATGVR-------------RMARHYVHA---GMIGL-DG- 286 (411)
T ss_pred HHHHHHHHHHcCCceecccCcccccccchHh--HHHHHHH-hcCCC-------------CcceEEEEC---CEECc-CC-
Confidence 3355677777777789999999964 56654 3433321 13311 113333433 22333 66
Q ss_pred CccccCCCCCCceeec
Q 015509 268 SKMSKSAPSDQSRINL 283 (405)
Q Consensus 268 ~KMSKS~p~~~s~I~L 283 (405)
+|||||. +|.|.+
T Consensus 287 ~KMSKSl---GN~i~~ 299 (411)
T TIGR03447 287 EKMSKSL---GNLVFV 299 (411)
T ss_pred CCccCcC---CCCCCH
Confidence 6999997 577766
No 105
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=66.29 E-value=39 Score=36.94 Aligned_cols=64 Identities=14% Similarity=0.237 Sum_probs=32.1
Q ss_pred CceEEEeeCCC------CcchhhhHHHHHHHHHHhccCCCcChHH-HHHHHHHHHHHHHHcCCC---CCceEEEEcCCch
Q 015509 78 KKRIVSGVQPT------GSIHLGNYLGAIKNWIALQITLPYDTQQ-LSKATRETAAIYLACGID---NSKASVFVQSHVR 147 (405)
Q Consensus 78 ~~~i~sGi~PT------G~lHLGnylg~i~~~~~lQit~~~d~~~-l~~~~~~~~~~~lA~GiD---p~k~~if~qS~v~ 147 (405)
+.-+.+|-.|. --+.|.-|-..+..|++-. ++. ...+.+..+..|+.-|+. ..++.+.|.=.+|
T Consensus 173 p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~------~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP 246 (558)
T COG0143 173 PVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESN------PDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVP 246 (558)
T ss_pred CeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhC------ccccCChHHHHHHHHHHHccCcccceecCCCCCCccCC
Confidence 34555664432 2256666666667774321 111 123445555557777764 2334455555554
No 106
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=66.00 E-value=22 Score=35.98 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=11.3
Q ss_pred CCCcchhhhHHHHH
Q 015509 87 PTGSIHLGNYLGAI 100 (405)
Q Consensus 87 PTG~lHLGnylg~i 100 (405)
|+|.+||||..+.+
T Consensus 12 vnG~lHiGHa~~~~ 25 (338)
T cd00818 12 ANGLPHYGHALNKI 25 (338)
T ss_pred CCCCchHHHHHHHH
Confidence 46999999998743
No 107
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=65.41 E-value=27 Score=39.06 Aligned_cols=36 Identities=22% Similarity=0.114 Sum_probs=24.5
Q ss_pred hhhhHHHhhhhhccccceeccccch-HHHHHHHHHHHHH
Q 015509 188 LTYPVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAER 225 (405)
Q Consensus 188 l~YPvLQAADIl~~~adlVpvG~DQ-~~hleLtRdia~r 225 (405)
-+=...|+...|=-.-|+.-+|.|- -||+|= ++|..
T Consensus 432 HIECSAMs~~~LG~~~DIHgGG~DLiFPHHEN--EiAQs 468 (699)
T PRK14535 432 HIECSAMSENLFGDTFDIHGGGADLQFPHHEN--EIAQS 468 (699)
T ss_pred HHHHHHHHHHHcCCcceeECCccccCCCCCcc--HHHHH
Confidence 3444667777776678999999995 477764 44443
No 108
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=65.33 E-value=5.9 Score=46.00 Aligned_cols=59 Identities=24% Similarity=0.344 Sum_probs=36.7
Q ss_pred ccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCccccCCCCCC
Q 015509 200 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 278 (405)
Q Consensus 200 ~~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 278 (405)
+|-+|+...|.||.. +=.+|-++.-+.. .| +.| ..++.. .+|.+- +| +|||||. +
T Consensus 536 ~~P~d~~~~G~Dii~-~W~arm~~~~~~~-~~---------------~~Pfk~v~~H--G~v~d~-~G-~KMSKSl---G 591 (995)
T PTZ00419 536 FFPTSLLETGSDILF-FWVARMVMMSLHL-TD---------------KLPFKTVFLH--AMVRDS-QG-EKMSKSK---G 591 (995)
T ss_pred cCCCcEEEechhHHh-HHHHHHHHHHHHh-cC---------------CCChHHHhcc--ceEECC-CC-CCcccCC---C
Confidence 356899999999876 5566666554321 11 345 233332 366553 57 6999997 5
Q ss_pred ceee
Q 015509 279 SRIN 282 (405)
Q Consensus 279 s~I~ 282 (405)
|.|.
T Consensus 592 NvId 595 (995)
T PTZ00419 592 NVID 595 (995)
T ss_pred CcCC
Confidence 7774
No 109
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=63.97 E-value=28 Score=37.01 Aligned_cols=59 Identities=17% Similarity=0.080 Sum_probs=36.8
Q ss_pred ceEEEeeCCCCcchhhhHHHHH-----HHHHHhc---------cCCCc------------ChHH-HHHHHHHHHHHHHHc
Q 015509 79 KRIVSGVQPTGSIHLGNYLGAI-----KNWIALQ---------ITLPY------------DTQQ-LSKATRETAAIYLAC 131 (405)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylg~i-----~~~~~lQ---------it~~~------------d~~~-l~~~~~~~~~~~lA~ 131 (405)
....+|.-|-|.+||||..+.+ ..|.+++ +|-.+ ++.. ...++.....++.++
T Consensus 23 ~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~L 102 (465)
T TIGR00435 23 KMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKAL 102 (465)
T ss_pred eEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3455888888999999977643 4454444 22212 2222 244456667788899
Q ss_pred CCCCCc
Q 015509 132 GIDNSK 137 (405)
Q Consensus 132 GiDp~k 137 (405)
|+.++.
T Consensus 103 gI~~d~ 108 (465)
T TIGR00435 103 NVLPPD 108 (465)
T ss_pred CCCCCc
Confidence 997654
No 110
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.84 E-value=17 Score=41.64 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015509 376 KVLADGAAKAADIADATLNNVYQA 399 (405)
Q Consensus 376 ~iL~~Ga~kAr~iA~~tl~~Vr~a 399 (405)
..|..+ +.++..|..||..|.+.
T Consensus 655 ~~l~~~-~~~~~~a~~tL~~vl~~ 677 (877)
T COG0525 655 PRLYGG-EEEKRAARATLYYVLDT 677 (877)
T ss_pred hhhcCc-HHHHHHHHHHHHHHHHH
Confidence 344444 66666777777777654
No 111
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=63.10 E-value=5 Score=46.51 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=18.4
Q ss_pred cchhhhhhHHHhhhhh--ccccceeccccchHH
Q 015509 184 GVALLTYPVLMASDIL--LYQSDFVPVGEDQKQ 214 (405)
Q Consensus 184 ~~g~l~YPvLQAADIl--~~~adlVpvG~DQ~~ 214 (405)
+++.+.||--. -+.| .+-+|+...|.||..
T Consensus 526 p~a~~~~p~~~-~~~f~~~~Pad~~~~G~Di~r 557 (975)
T PRK06039 526 PYAQLHYPFEN-KEWFEKHFPADFIVEGIDQTR 557 (975)
T ss_pred cHHHhCCcccC-hhhhhccCCceEEEechhhHh
Confidence 34555666421 1211 356899999999975
No 112
>PLN02563 aminoacyl-tRNA ligase
Probab=63.01 E-value=11 Score=43.82 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=22.4
Q ss_pred ccccceeccccch-HHHHHHHHHHHHHHh
Q 015509 200 LYQSDFVPVGEDQ-KQHLELTRELAERVN 227 (405)
Q Consensus 200 ~~~adlVpvG~DQ-~~hleLtRdia~r~n 227 (405)
.+-+|+..+|.|| .-|+-.+|-....+.
T Consensus 614 w~PvD~yigG~dhailHLlY~Rfw~~~l~ 642 (963)
T PLN02563 614 WMPVDLYVGGAEHAVLHLLYARFWHKVLY 642 (963)
T ss_pred cCCCcEeeccHHHHhhHhHHHHHHHHHHH
Confidence 3459999999999 578888888876554
No 113
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=62.96 E-value=5.7 Score=43.43 Aligned_cols=68 Identities=22% Similarity=0.279 Sum_probs=44.2
Q ss_pred ceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc-cccCCCCcccccCCCCCCccccCCCCCCceee
Q 015509 204 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 282 (405)
Q Consensus 204 dlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~-~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 282 (405)
-+--+|.||..|+.-.+-++..... ..+. .+++.. -.++...+| .||||-. ++.|.
T Consensus 337 ~IyV~gadq~~~~~ql~~~l~~~g~------------------~~~~~~~~h~~-~~l~~~~~g-~kmStR~---G~~vt 393 (577)
T COG0018 337 LIYVLGADQHGHFKQLKAVLELLGY------------------GPDKEVLLHQG-VGLVRGGEG-VKMSTRA---GNVVT 393 (577)
T ss_pred EEEEeCCcchhHHHHHHHHHHHhcC------------------CCccceEEEEE-EeeeECCCC-ccccccC---CceEE
Confidence 3457999999999999999888652 2232 222210 123332234 5899996 68999
Q ss_pred cCCCHHHHHHHh
Q 015509 283 LLDPKDVIANKI 294 (405)
Q Consensus 283 L~Dspe~I~kKI 294 (405)
|.|==|++.+|-
T Consensus 394 l~dllde~~era 405 (577)
T COG0018 394 LDDLLDEAGERA 405 (577)
T ss_pred HHHHHHHHHHHh
Confidence 988766666433
No 114
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=62.92 E-value=17 Score=37.37 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=14.8
Q ss_pred CCCcchhhhHHHHH-----HHHHHhc
Q 015509 87 PTGSIHLGNYLGAI-----KNWIALQ 107 (405)
Q Consensus 87 PTG~lHLGnylg~i-----~~~~~lQ 107 (405)
|+|.+||||..+.+ ..+.+++
T Consensus 12 ~nG~lHiGH~~~~~~~Dv~~Ry~r~~ 37 (382)
T cd00817 12 VTGSLHMGHALNNTIQDIIARYKRMK 37 (382)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 56999999988744 3455554
No 115
>PLN02381 valyl-tRNA synthetase
Probab=62.29 E-value=5.9 Score=46.41 Aligned_cols=59 Identities=24% Similarity=0.345 Sum_probs=37.3
Q ss_pred ccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC--ccccCCCCcccccCCCCCCccccCCCCC
Q 015509 200 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSD 277 (405)
Q Consensus 200 ~~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P--~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 277 (405)
+|-+|+..-|-||. ++=++|-+..-+-. .| ..| ..+++ .+|.+- +| +|||||.
T Consensus 606 ~~P~d~~~~G~Dii-~~W~~rmi~~~~~~-~~---------------~~PFk~v~~h---G~V~D~-~G-~KMSKS~--- 660 (1066)
T PLN02381 606 FYPTSVLETGHDIL-FFWVARMVMMGMQL-GG---------------DVPFRKVYLH---PMIRDA-HG-RKMSKSL--- 660 (1066)
T ss_pred cCCCeeeeecchhh-hhHHHHHHHHHHHh-CC---------------CCchHHheec---ceEECC-CC-CCCCCCC---
Confidence 35689999999998 66677777544321 12 233 22332 366664 57 6999997
Q ss_pred Cceeec
Q 015509 278 QSRINL 283 (405)
Q Consensus 278 ~s~I~L 283 (405)
+|.|..
T Consensus 661 GNvIdP 666 (1066)
T PLN02381 661 GNVIDP 666 (1066)
T ss_pred CCCCCH
Confidence 677743
No 116
>PLN02286 arginine-tRNA ligase
Probab=59.33 E-value=10 Score=41.49 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=40.8
Q ss_pred ceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeec
Q 015509 204 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 283 (405)
Q Consensus 204 dlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L 283 (405)
-+-.+|.||..|+.-...+++.++.... ..-..-+++.. .+|-++ +| +||||.. ++.|.|
T Consensus 330 ~IyVvg~~q~~hf~~v~~~l~~lG~~~~------------~~~~~l~h~~~---g~V~~~-~g-~kmStR~---G~~v~L 389 (576)
T PLN02286 330 IIYVTDVGQQQHFDMVFKAAKRAGWLPE------------DTYPRLEHVGF---GLVLGE-DG-KRFRTRS---GEVVRL 389 (576)
T ss_pred EEEEEeCcHHHHHHHHHHHHHHcCCCcc------------ccCCceEEEee---ccEECC-CC-CcccCCC---CCeeEH
Confidence 4457999999999999999998762100 00001122222 266444 56 5999885 689998
Q ss_pred CCCHHH
Q 015509 284 LDPKDV 289 (405)
Q Consensus 284 ~Dspe~ 289 (405)
.|==++
T Consensus 390 ~dllde 395 (576)
T PLN02286 390 VDLLDE 395 (576)
T ss_pred HHHHHH
Confidence 764333
No 117
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=57.24 E-value=1.4e+02 Score=26.41 Aligned_cols=85 Identities=11% Similarity=0.190 Sum_probs=61.7
Q ss_pred CccchHHHHHHhhCCCC--HHHHHHHHhcCCcchHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 015509 313 PECNNLLSIYQLISGKT--KGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIAD 390 (405)
Q Consensus 313 pev~nll~i~~~~t~~~--~eel~~~y~~~~~gdlK~~Lae~i~~~L~pirer~~e~~~~~~~l~~iL~~Ga~kAr~iA~ 390 (405)
++.+|+=-.++++++.+ .++-..+| .++++.+.++|...+..+.+.|...+..-..+..-+.+..++.+++ +
T Consensus 19 ~~~~pv~~al~~ld~ss~g~~~~~~~f-----~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~l-K 92 (142)
T PF04048_consen 19 DDFNPVELALSLLDDSSVGRAHRYQEF-----EELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIREL-K 92 (142)
T ss_pred CCCcHHHHHHHhcCCCCccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 45667766777776654 23333333 3678888888888888888888888877777788888888887776 7
Q ss_pred HHHHHHHHHcCCC
Q 015509 391 ATLNNVYQAMGFL 403 (405)
Q Consensus 391 ~tl~~Vr~a~Gl~ 403 (405)
+.|...++.+|..
T Consensus 93 ~~L~~ak~~L~~~ 105 (142)
T PF04048_consen 93 ESLQEAKSLLGCR 105 (142)
T ss_pred HHHHHHHHHHhcC
Confidence 7888888888754
No 118
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=57.04 E-value=6.2 Score=42.47 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=31.7
Q ss_pred ceeccccchHHHHH-HHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceee
Q 015509 204 DFVPVGEDQKQHLE-LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 282 (405)
Q Consensus 204 dlVpvG~DQ~~hle-LtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 282 (405)
++...|.|+...+. +---+..-.+ ..++.|..++.. ..+. + +| +|||||. +|.|.
T Consensus 289 ~~~~~G~D~~~Fh~~~~p~~l~~~~----------------~~~~~P~~v~~~--G~v~-~-~G-~KMSKS~---GN~I~ 344 (556)
T PRK12268 289 SYYFIGKDNIPFHSIIWPAMLLGSG----------------EPLKLPDEIVSS--EYLT-L-EG-GKFSKSR---GWGIW 344 (556)
T ss_pred EEEEEeeccCcchHHHHHHHHHhcC----------------CCCCCCCEeecc--CCEE-E-CC-eeeccCC---CcccC
Confidence 47788999976432 2222211111 114567655544 2443 3 66 6999997 57775
Q ss_pred cC
Q 015509 283 LL 284 (405)
Q Consensus 283 L~ 284 (405)
..
T Consensus 345 p~ 346 (556)
T PRK12268 345 VD 346 (556)
T ss_pred HH
Confidence 43
No 119
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=56.80 E-value=7 Score=39.31 Aligned_cols=38 Identities=21% Similarity=-0.019 Sum_probs=28.2
Q ss_pred hhhHHHhhhhhccccceeccccchH-HHHHHHHHHHHHH
Q 015509 189 TYPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERV 226 (405)
Q Consensus 189 ~YPvLQAADIl~~~adlVpvG~DQ~-~hleLtRdia~r~ 226 (405)
+=...|+...|=..-|+--+|.|-. ||+|=-+-.++-.
T Consensus 193 iECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~ 231 (300)
T PF01406_consen 193 IECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAA 231 (300)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHH
T ss_pred eehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHh
Confidence 3346778888888899999999975 7887655555544
No 120
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=55.48 E-value=8.8 Score=43.83 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=19.7
Q ss_pred cccceeccccch-HHHHHHHHHHHHH
Q 015509 201 YQSDFVPVGEDQ-KQHLELTRELAER 225 (405)
Q Consensus 201 ~~adlVpvG~DQ-~~hleLtRdia~r 225 (405)
+-+|+...|.|| .-|+-.+|-....
T Consensus 519 ~PvD~yi~G~dhailHLlyaRf~~~~ 544 (842)
T TIGR00396 519 LPVDLYIGGAEHAILHLLYARFWHKF 544 (842)
T ss_pred CCCcEeeccHHHHHHHHHHHHHHHHH
Confidence 459999999999 6788777876533
No 121
>PLN02882 aminoacyl-tRNA ligase
Probab=54.19 E-value=10 Score=44.78 Aligned_cols=77 Identities=26% Similarity=0.375 Sum_probs=42.4
Q ss_pred CCcchhhhhhHHHhhhhh--ccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcc
Q 015509 182 NVGVALLTYPVLMASDIL--LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGAR 259 (405)
Q Consensus 182 ~~~~g~l~YPvLQAADIl--~~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~ 259 (405)
..+++.+-||- ..-+.| .+=+|+..-|.||..-- +.+-++...- .+| .+.|..++.. ..
T Consensus 546 ~~p~a~~~~p~-e~~~~f~~~~PaD~i~eG~Dq~RgW-f~~ll~~s~~-l~~--------------~~pfk~Vivh--G~ 606 (1159)
T PLN02882 546 SMPYAYIHYPF-ENKELFEKNFPADFVAEGLDQTRGW-FYTLMVLSTA-LFD--------------KPAFKNLICN--GL 606 (1159)
T ss_pred ccHHHHcCCcc-cChhHhhccCCceEEEEecchhhhH-HHHHHHHHHH-hcC--------------CCCcceeEEc--cE
Confidence 45667777773 112221 24599999999998853 4444433321 123 1334444432 13
Q ss_pred cccCCCCCCccccCCCCCCceee
Q 015509 260 VMSLTDGLSKMSKSAPSDQSRIN 282 (405)
Q Consensus 260 l~sL~dg~~KMSKS~p~~~s~I~ 282 (405)
+.. .+| +|||||. +|.|.
T Consensus 607 vld-e~G-~KMSKSl---GNvId 624 (1159)
T PLN02882 607 VLA-EDG-KKMSKSL---KNYPD 624 (1159)
T ss_pred EEC-CCC-CCcccCC---CCCCC
Confidence 333 256 7999997 56763
No 122
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=53.59 E-value=8.6 Score=41.16 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=32.1
Q ss_pred eeccccchHHHHHHHH-HHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeec
Q 015509 205 FVPVGEDQKQHLELTR-ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 283 (405)
Q Consensus 205 lVpvG~DQ~~hleLtR-dia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L 283 (405)
+.+.|.|....+-+-- -+..- .| ++.|..++.. ..+. + +| +|||||. +|.|.+
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~----~~--------------~~~~~~~~~~--g~v~-~-~g-~KmSKS~---Gn~i~~ 338 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMG----LG--------------LPLPTQVFSH--GYLT-V-EG-GKMSKSL---GNVVDP 338 (530)
T ss_pred EEEEecccchhHHHHHHHHHHh----CC--------------CCCCCEEEee--ccEE-E-CC-ceecccC---CceecH
Confidence 7899999988643321 11111 11 4556666554 2343 3 45 6999997 678865
Q ss_pred CC
Q 015509 284 LD 285 (405)
Q Consensus 284 ~D 285 (405)
.|
T Consensus 339 ~d 340 (530)
T TIGR00398 339 SD 340 (530)
T ss_pred HH
Confidence 43
No 123
>PLN02946 cysteine-tRNA ligase
Probab=52.66 E-value=75 Score=34.79 Aligned_cols=34 Identities=21% Similarity=-0.009 Sum_probs=24.8
Q ss_pred hhhhhhHHHhhhhhccccceeccccchH-HHHHHH
Q 015509 186 ALLTYPVLMASDILLYQSDFVPVGEDQK-QHLELT 219 (405)
Q Consensus 186 g~l~YPvLQAADIl~~~adlVpvG~DQ~-~hleLt 219 (405)
|--+=..-|+...|=..-|+--+|.|-. ||+|--
T Consensus 261 GWHIECSaMs~~~lG~~~DIH~GG~DL~FPHHENE 295 (557)
T PLN02946 261 GWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENE 295 (557)
T ss_pred cHHHHHHHHHHHHcCCCeeEeccccccCCCcccch
Confidence 3344456788888888899999999964 677543
No 124
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=51.86 E-value=8.3 Score=41.35 Aligned_cols=68 Identities=25% Similarity=0.154 Sum_probs=40.3
Q ss_pred hHHHhhhhhccccceeccccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCc
Q 015509 191 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 269 (405)
Q Consensus 191 PvLQAADIl~~~adlVpvG~DQ~-~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~K 269 (405)
..-|+...|--.-|+.-+|.|-. ||+|- ++|...- .+|. +.+...+.. ....+ +| +|
T Consensus 222 CsaMs~~~lg~~~DIH~GG~DliFPHHen--eiAqs~a-~~g~--------------~~~~~w~h~---g~l~~-~g-~K 279 (490)
T PRK14536 222 CSAMSMKYLGEQCDIHIGGVDHIRVHHTN--EIAQCEA-ATGK--------------PWVRYWLHH---EFLLM-NK-GK 279 (490)
T ss_pred HHHHHHHHcCCceeEEeccccCCCcchhh--HHHHHHH-hcCC--------------CcceEEEEc---CEEee-cC-cc
Confidence 45667776666679999999964 67754 3444321 1231 223334433 22233 56 69
Q ss_pred cccCCCCCCceeec
Q 015509 270 MSKSAPSDQSRINL 283 (405)
Q Consensus 270 MSKS~p~~~s~I~L 283 (405)
||||. +|.|.+
T Consensus 280 MSKSl---GN~itl 290 (490)
T PRK14536 280 MSKSA---GQFLTL 290 (490)
T ss_pred ccccC---CCcccH
Confidence 99997 678876
No 125
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=49.56 E-value=38 Score=27.38 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=33.1
Q ss_pred CCccchHHHHHHhhCCCCHHHHHHHHhcCCcchHHHHHHHHHHH
Q 015509 312 RPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 355 (405)
Q Consensus 312 rpev~nll~i~~~~t~~~~eel~~~y~~~~~gdlK~~Lae~i~~ 355 (405)
|..|.++++++. .+.+.+|+.++|-++...++..++.-+...
T Consensus 30 RI~V~~Il~~l~--~G~s~eeil~dyp~Lt~~dI~aal~ya~~~ 71 (79)
T COG2442 30 RIPVWDILEMLA--AGESIEEILADYPDLTLEDIRAALRYAADR 71 (79)
T ss_pred eecHHHHHHHHH--CCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 445566666665 789999999999999999988888766654
No 126
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=48.83 E-value=19 Score=38.09 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=42.2
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHhc-------cCC--CcChHHHHHHHHHHHHHHHHcCCCCCceEE-------EE
Q 015509 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ-------ITL--PYDTQQLSKATRETAAIYLACGIDNSKASV-------FV 142 (405)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylg~i~~~~~lQ-------it~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~~i-------f~ 142 (405)
+|+=-.=-|||.+|||-.-.|+-|++--. +.+ .+-...+......+..++.=+||++|..-. |.
T Consensus 34 VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDTDq~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG~~GPY~ 113 (524)
T KOG1149|consen 34 VRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDTDQKRLIRGSEEAIYEDLKWANLDWDEGPGVGGPFGPYE 113 (524)
T ss_pred eEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccccccccccchHHHHHHHHHhcCCCcccCCCcCCCCCchh
Confidence 44544555789999999888886753321 222 122223444445566677789999887543 67
Q ss_pred cCCc
Q 015509 143 QSHV 146 (405)
Q Consensus 143 qS~v 146 (405)
||+-
T Consensus 114 QS~R 117 (524)
T KOG1149|consen 114 QSER 117 (524)
T ss_pred hHHH
Confidence 8874
No 127
>PLN02946 cysteine-tRNA ligase
Probab=48.83 E-value=7.9 Score=42.17 Aligned_cols=59 Identities=14% Similarity=-0.023 Sum_probs=34.2
Q ss_pred CCceEE-EeeCCCCcchhhhHHHHH-----HHHHHhc---------cCCCc------------ChHH-HHHHHHHHHHHH
Q 015509 77 VKKRIV-SGVQPTGSIHLGNYLGAI-----KNWIALQ---------ITLPY------------DTQQ-LSKATRETAAIY 128 (405)
Q Consensus 77 ~~~~i~-sGi~PTG~lHLGnylg~i-----~~~~~lQ---------it~~~------------d~~~-l~~~~~~~~~~~ 128 (405)
.+..+| +|.-+-|.+||||....+ ..|.+.. +|-.+ ++.+ ..+++....+++
T Consensus 79 ~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~ 158 (557)
T PLN02946 79 GKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDM 158 (557)
T ss_pred CceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 345555 454444999999987644 3443332 23222 2322 345566677788
Q ss_pred HHcCCCC
Q 015509 129 LACGIDN 135 (405)
Q Consensus 129 lA~GiDp 135 (405)
.++|+.+
T Consensus 159 ~~LnI~~ 165 (557)
T PLN02946 159 AYLHCLP 165 (557)
T ss_pred HHCCCCC
Confidence 8899853
No 128
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=48.04 E-value=83 Score=25.64 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015509 343 GTFKPLLTDALIEHLHPIQVRYEEIMSD-SAYLDKVLADGAAKAADIADATLNNVYQ 398 (405)
Q Consensus 343 gdlK~~Lae~i~~~L~pirer~~e~~~~-~~~l~~iL~~Ga~kAr~iA~~tl~~Vr~ 398 (405)
.++...+++...+..+.+|++..+..++ .+.+.+......+++++.+..|=.-|++
T Consensus 15 ~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e 71 (94)
T PF05957_consen 15 EDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRE 71 (94)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777777766543 1344445555555556666665555554
No 129
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=47.75 E-value=18 Score=39.38 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=39.5
Q ss_pred cceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc-cccCCCCcccccCCCCCCccccCCCCCCcee
Q 015509 203 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 281 (405)
Q Consensus 203 adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~-~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 281 (405)
.-+-.+|.||..|+.-...+++.++. ..+. ..+-.. .+| .| +| +||||.. ++.|
T Consensus 326 ~~IyV~g~dq~~h~~~l~~~~~~lg~------------------~~~~~l~h~~~-g~V-~~-~g-~kmStR~---G~~v 380 (562)
T PRK12451 326 KALYVVGPEQSLHFNQFFTVLKKLGY------------------TWVDGMEHVPF-GLI-LK-DG-KKMSTRK---GRVV 380 (562)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHcCC------------------CcccCeEEEee-eeE-ec-CC-CCCcCCC---CCee
Confidence 34558999999999999999999762 1111 111111 133 34 55 5999996 6788
Q ss_pred ecCCCHH
Q 015509 282 NLLDPKD 288 (405)
Q Consensus 282 ~L~Dspe 288 (405)
.|.|==+
T Consensus 381 ~l~dLld 387 (562)
T PRK12451 381 LLEEVLE 387 (562)
T ss_pred EHHHHHH
Confidence 8876333
No 130
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=47.57 E-value=29 Score=39.33 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=19.5
Q ss_pred CceEEE-eeCCCCcchhhhHHHHH-----HHHHHhc
Q 015509 78 KKRIVS-GVQPTGSIHLGNYLGAI-----KNWIALQ 107 (405)
Q Consensus 78 ~~~i~s-Gi~PTG~lHLGnylg~i-----~~~~~lQ 107 (405)
++.+.+ .--|+|.+||||.++.+ ..|.+++
T Consensus 39 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~ 74 (800)
T PRK13208 39 VYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMR 74 (800)
T ss_pred cEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcC
Confidence 355555 33567999999998743 3455555
No 131
>PLN02610 probable methionyl-tRNA synthetase
Probab=46.36 E-value=73 Score=36.40 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=20.0
Q ss_pred ccCCccccCCCCcccccCCCCCCccccCCCCCCceeecC
Q 015509 246 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 284 (405)
Q Consensus 246 f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~ 284 (405)
++.|..++... .+ .+ +| +|||||. +|.|+..
T Consensus 330 ~~~p~~i~~~g--~l-~~-eG-~KMSKS~---GNvV~p~ 360 (801)
T PLN02610 330 WTMMKTISVTE--YL-NY-EG-GKFSKSK---GVGVFGN 360 (801)
T ss_pred cCCCCEEEecc--CE-ec-CC-ceecCcC---CcccCHH
Confidence 45777766541 33 23 67 6999997 6777653
No 132
>PHA01929 putative scaffolding protein
Probab=43.92 E-value=1.7e+02 Score=29.07 Aligned_cols=38 Identities=13% Similarity=0.029 Sum_probs=27.8
Q ss_pred CCCCCCccchHHHHHHhhCCCCHHHHHHHHh-cCCcchH
Q 015509 308 DNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTF 345 (405)
Q Consensus 308 ~~~~rpev~nll~i~~~~t~~~~eel~~~y~-~~~~gdl 345 (405)
+-.++|....-+.|+..|++.+--++++.|+ .+.++|-
T Consensus 114 ~~~gDp~laasv~~L~~~sg~~dlD~~RAfGKA~E~~Dp 152 (306)
T PHA01929 114 NLEGDPQLAPSVSYLEAFSGLDKLDTVRAFGKAAENRDP 152 (306)
T ss_pred cccCCcccchHHHHHHHHhcCcchHHHHHHHHHhhccCc
Confidence 3457888889999999998776677788876 3455543
No 133
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=43.43 E-value=9.2 Score=39.04 Aligned_cols=73 Identities=26% Similarity=0.208 Sum_probs=41.6
Q ss_pred cceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceee
Q 015509 203 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 282 (405)
Q Consensus 203 adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 282 (405)
.-+-.+|.||..|+.-...+++.++..-. . ....+-.. .++. +.+|..|||+.. ++.|.
T Consensus 240 ~~iyV~~~~q~~hf~~l~~~l~~lg~~~~---------------~-~~~~H~~~-g~vl-~~~gk~~mstR~---G~~i~ 298 (354)
T PF00750_consen 240 KIIYVVGADQKGHFKQLFAILEALGYDPE---------------A-VKLQHVSF-GVVL-LKDGKVKMSTRK---GNVIT 298 (354)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHTT-HHH---------------H-CTEEEEEE--EEE-ETTBEESS-TTT---TSSTB
T ss_pred cEEEEecCchhhHHHHHHHHHHHhCCCCC---------------C-CEEEEEEE-EEEE-cCCCCccccCCC---CCceE
Confidence 44558999999999999999999873100 0 11111111 1222 236623799996 68898
Q ss_pred cCCCHHHHHHHhhc
Q 015509 283 LLDPKDVIANKIKR 296 (405)
Q Consensus 283 L~Dspe~I~kKI~k 296 (405)
|.|==++..++.+.
T Consensus 299 l~dllde~~~~a~~ 312 (354)
T PF00750_consen 299 LDDLLDEAVERALE 312 (354)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 85544444444433
No 134
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=42.61 E-value=1.1e+02 Score=32.96 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=17.3
Q ss_pred CCceEE-EeeCCCCcchhhhHHHHH
Q 015509 77 VKKRIV-SGVQPTGSIHLGNYLGAI 100 (405)
Q Consensus 77 ~~~~i~-sGi~PTG~lHLGnylg~i 100 (405)
...++| +|.-+-+.+||||....+
T Consensus 22 ~~v~mYvCGpTvy~~~HiGhar~~v 46 (490)
T PRK14536 22 GHVRLYGCGPTVYNYAHIGNLRTYV 46 (490)
T ss_pred CceEEEeeCCccCCCcccchhHHHH
Confidence 345555 677666999999987643
No 135
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.61 E-value=82 Score=35.66 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=16.9
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 015509 372 AYLDKVLADG--AAKAADIADATLNNVYQA 399 (405)
Q Consensus 372 ~~l~~iL~~G--a~kAr~iA~~tl~~Vr~a 399 (405)
+++++.|--| ..-+|..++-||-.+...
T Consensus 746 divKDRLY~~~~~s~~rrs~QttL~h~l~~ 775 (937)
T KOG0433|consen 746 DIVKDRLYCDKVGSESRRSAQTTLHHLLHN 775 (937)
T ss_pred HHHhhhhhcCCCCcHHHHHHHHHHHHHHHH
Confidence 3556666555 445667777777665543
No 136
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=42.47 E-value=95 Score=31.01 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=47.3
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCce
Q 015509 201 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 280 (405)
Q Consensus 201 ~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 280 (405)
.++|....|.--.|-+.+.|.+++.+| + |.-++.- +.+-. .|| ==||+-+
T Consensus 142 v~P~~a~FGeKD~QQl~vIrrmv~dL~------------------~--~v~I~~~--ptvRe-~dG-LA~SSRN------ 191 (282)
T TIGR00018 142 VQPDVAYFGEKDAQQLAVIRKLVADLF------------------L--DIEIVPV--PIVRE-EDG-LALSSRN------ 191 (282)
T ss_pred cCCCeeEecccHHHHHHHHHHHHHHcC------------------C--CceEEEe--CceEC-CCC-Cchhhcc------
Confidence 379999999999999999999999987 2 3333322 12222 356 3788763
Q ss_pred eecCCCHHHHHHHhhcccC
Q 015509 281 INLLDPKDVIANKIKRCKT 299 (405)
Q Consensus 281 I~L~Dspe~I~kKI~kA~T 299 (405)
.+|+....+..-.|-++.+
T Consensus 192 ~~Ls~~eR~~A~~l~~~L~ 210 (282)
T TIGR00018 192 VYLTAEQRKIAPGLYRALQ 210 (282)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 5777777776666666554
No 137
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=42.11 E-value=31 Score=41.10 Aligned_cols=34 Identities=24% Similarity=0.464 Sum_probs=22.0
Q ss_pred CcchhhhhhHHHhhhhh--ccccceeccccchHHHH
Q 015509 183 VGVALLTYPVLMASDIL--LYQSDFVPVGEDQKQHL 216 (405)
Q Consensus 183 ~~~g~l~YPvLQAADIl--~~~adlVpvG~DQ~~hl 216 (405)
.+.+.+-||--...+-| .|=+|+.+=|.||..--
T Consensus 652 ~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgW 687 (1205)
T PTZ00427 652 MPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGW 687 (1205)
T ss_pred ChHHHhCCCcccchhhHhccCCceEEEEecchhccH
Confidence 45677778853112322 35599999999997643
No 138
>PLN02224 methionine-tRNA ligase
Probab=40.45 E-value=18 Score=39.97 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=40.5
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCce
Q 015509 201 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 280 (405)
Q Consensus 201 ~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 280 (405)
...|+..+|.|-..++-+-= .|--+. -| ++.|..++... .+ .+ +| +|||||. +|.
T Consensus 320 w~~~v~~iGKDii~fH~i~w-pa~l~~--~g--------------~~~P~~i~~~g--~l-~~-eG-~KMSKS~---GN~ 374 (616)
T PLN02224 320 WPASLHLIGKDILRFHAVYW-PAMLMS--AG--------------LELPKMVFGHG--FL-TK-DG-MKMGKSL---GNT 374 (616)
T ss_pred CCcceEEEeecccccHHHHH-HHHHHH--CC--------------CCCCcEEEecc--cE-ec-CC-ccccccC---Ccc
Confidence 34678899999988643321 111111 11 46677666542 33 33 67 6999997 678
Q ss_pred eecCC-----CHHHHHHHhhc
Q 015509 281 INLLD-----PKDVIANKIKR 296 (405)
Q Consensus 281 I~L~D-----spe~I~kKI~k 296 (405)
|...| ++|.++=-+..
T Consensus 375 i~p~e~l~~ygaD~~R~yLl~ 395 (616)
T PLN02224 375 LEPFELVQKFGPDAVRYFFLR 395 (616)
T ss_pred CCHHHHHHHcCcHHHHHHHHh
Confidence 86543 34444444443
No 139
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=39.65 E-value=14 Score=39.65 Aligned_cols=67 Identities=22% Similarity=0.117 Sum_probs=0.0
Q ss_pred Hhhhhhccccceeccccc-hHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcccc
Q 015509 194 MASDILLYQSDFVPVGED-QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 272 (405)
Q Consensus 194 QAADIl~~~adlVpvG~D-Q~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSK 272 (405)
|+...|--.-|+.-+|.| .-||+|--+-.+.-.+. .+.+...+.. -...+ +| +||||
T Consensus 225 m~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a~~g-----------------~~~~~~W~H~---g~l~~-~g-~KMSK 282 (481)
T PRK14534 225 MNLEYFKSTLDIHLGGVDHIGVHHINEIAIAECYLN-----------------KKWCDMFVHG---EFLIM-EY-EKMSK 282 (481)
T ss_pred HHHHHcCCcceEEecccccCCCcchhHHHHHhhhcC-----------------CCcceEEEEe---cEEEe-cC-ceecc
Q ss_pred CCCCCCceeecCC
Q 015509 273 SAPSDQSRINLLD 285 (405)
Q Consensus 273 S~p~~~s~I~L~D 285 (405)
|. +|.|.+.|
T Consensus 283 Sl---GN~i~l~d 292 (481)
T PRK14534 283 SN---NNFITIKD 292 (481)
T ss_pred cC---CCcccHHH
No 140
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.24 E-value=32 Score=38.44 Aligned_cols=59 Identities=22% Similarity=0.328 Sum_probs=36.4
Q ss_pred CCCCceEEEee-CCCCcchhhhHHH-----HHHHHHHhc----cC-C-------C----------cChHHHHHHHHHHHH
Q 015509 75 SSVKKRIVSGV-QPTGSIHLGNYLG-----AIKNWIALQ----IT-L-------P----------YDTQQLSKATRETAA 126 (405)
Q Consensus 75 ~~~~~~i~sGi-~PTG~lHLGnylg-----~i~~~~~lQ----it-~-------~----------~d~~~l~~~~~~~~~ 126 (405)
...+++|++-| -|||.+|+||..+ .+..+.+++ |. + + ++..-..+|+..+..
T Consensus 55 ~sk~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~ 134 (876)
T KOG0435|consen 55 KSKKKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQ 134 (876)
T ss_pred cCCCceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHH
Confidence 33455999888 5999999999653 335555555 11 1 1 112224566666666
Q ss_pred HHHHcCC
Q 015509 127 IYLACGI 133 (405)
Q Consensus 127 ~~lA~Gi 133 (405)
.+...|+
T Consensus 135 Ql~~lg~ 141 (876)
T KOG0435|consen 135 QLKSLGI 141 (876)
T ss_pred HHHHcCc
Confidence 7777775
No 141
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=37.86 E-value=23 Score=40.29 Aligned_cols=25 Identities=20% Similarity=0.120 Sum_probs=19.5
Q ss_pred cccceeccccch-HHHHHHHHHHHHH
Q 015509 201 YQSDFVPVGEDQ-KQHLELTRELAER 225 (405)
Q Consensus 201 ~~adlVpvG~DQ-~~hleLtRdia~r 225 (405)
|-+|+...|.|| .-|+-.+|-....
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~~ 547 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTKV 547 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHH
Confidence 459999999999 6888778855433
No 142
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.00 E-value=13 Score=39.57 Aligned_cols=73 Identities=27% Similarity=0.170 Sum_probs=45.0
Q ss_pred hhhHHHhhhhhccccceeccccc-hHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCC
Q 015509 189 TYPVLMASDILLYQSDFVPVGED-QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL 267 (405)
Q Consensus 189 ~YPvLQAADIl~~~adlVpvG~D-Q~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~ 267 (405)
+=...|+.++|=-.-|+--+|.| +-||+|= |||+.-- .+|.+ .|. -.-+++. +|+ . +|
T Consensus 208 IECSaM~~~~LG~~~DIHgGG~DLiFPHHEN--EiAQsea-~~g~~-----------~~a-~yWmH~G---~l~-i-~g- 266 (464)
T COG0215 208 IECSAMSTKYLGETFDIHGGGSDLIFPHHEN--EIAQSEA-ATGVK-----------PFA-KYWMHNG---FLN-I-DG- 266 (464)
T ss_pred HHHHHHHHHHhCCCcceecCcccccCCCccc--HHHHHHh-hhCCC-----------cce-eEeEEcc---eee-e-cC-
Confidence 34467899998888999999999 5688864 4554421 23311 111 1123322 332 2 56
Q ss_pred CccccCCCCCCceeecCC
Q 015509 268 SKMSKSAPSDQSRINLLD 285 (405)
Q Consensus 268 ~KMSKS~p~~~s~I~L~D 285 (405)
+|||||. +|.|.+.|
T Consensus 267 eKMSKSL---GNfiti~d 281 (464)
T COG0215 267 EKMSKSL---GNFITVRD 281 (464)
T ss_pred cCccccc---CCeeEHHH
Confidence 6999997 67887654
No 143
>PLN02943 aminoacyl-tRNA ligase
Probab=36.76 E-value=37 Score=39.48 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=20.6
Q ss_pred CceEEEe-eCCCCcchhhhHHHH-----HHHHHHhc
Q 015509 78 KKRIVSG-VQPTGSIHLGNYLGA-----IKNWIALQ 107 (405)
Q Consensus 78 ~~~i~sG-i~PTG~lHLGnylg~-----i~~~~~lQ 107 (405)
++.+..| =-+||.+|+||.+.. +..|.+++
T Consensus 89 ~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~ 124 (958)
T PLN02943 89 PFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMK 124 (958)
T ss_pred CEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 3556565 557899999999863 34466666
No 144
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=34.99 E-value=15 Score=40.77 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=20.1
Q ss_pred ccCCccccCCCCcccccCCCCCCccccCCCCCCceeecC
Q 015509 246 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 284 (405)
Q Consensus 246 f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~ 284 (405)
++.|..++.. ..+. + +| +|||||. +|.|...
T Consensus 311 ~~lP~~v~~h--g~v~-~-~G-~KMSKS~---GNvV~p~ 341 (673)
T PRK00133 311 YRLPTNVFAH--GFLT-V-EG-AKMSKSR---GTFIWAR 341 (673)
T ss_pred CCCCCEEeee--ccEE-e-cC-CcccccC---CcccCHH
Confidence 5667766654 2443 3 66 6999997 6777654
No 145
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=34.47 E-value=1.4e+02 Score=26.46 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=38.6
Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015509 343 GTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNN 395 (405)
Q Consensus 343 gdlK~~Lae~i~~~L~pirer~~e~~~~~~~l~~iL~~Ga~kAr~iA~~tl~~ 395 (405)
..+|..+-++|.+.|.|. +.. ..+.+...+++.+-....+++|+++|++
T Consensus 19 Q~lKl~VRD~Vl~~l~~~---~~~-~~~~~ea~~~i~~~~~~Ie~~A~~~l~~ 67 (130)
T PF09551_consen 19 QALKLKVRDAVLEYLSPW---LSQ-AKSKEEAREVIRENLPEIEQIAEEVLAE 67 (130)
T ss_pred HHHHHHHHHHHHHHHHHH---hcc-CCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 368999999999999884 222 3566778888888888888899888864
No 146
>PRK10404 hypothetical protein; Provisional
Probab=34.03 E-value=1.8e+02 Score=24.51 Aligned_cols=56 Identities=11% Similarity=0.013 Sum_probs=35.0
Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015509 343 GTFKPLLTDALIEHLHPIQVRYEEIMSDSA-YLDKVLADGAAKAADIADATLNNVYQ 398 (405)
Q Consensus 343 gdlK~~Lae~i~~~L~pirer~~e~~~~~~-~l~~iL~~Ga~kAr~iA~~tl~~Vr~ 398 (405)
.++.+..++.-.+....+|++.+..+++-. .+.+.-....+++++.+..|=.-|++
T Consensus 22 e~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e 78 (101)
T PRK10404 22 EEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHE 78 (101)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555566666667777666655432 45555555666778888877777765
No 147
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.87 E-value=63 Score=35.47 Aligned_cols=19 Identities=42% Similarity=0.761 Sum_probs=16.6
Q ss_pred EEeeCCCCcchhhhHHHHH
Q 015509 82 VSGVQPTGSIHLGNYLGAI 100 (405)
Q Consensus 82 ~sGi~PTG~lHLGnylg~i 100 (405)
||.=-|||+||+||.-+++
T Consensus 123 ~sSaNptkplHiGHlR~ai 141 (577)
T COG0018 123 YSSANPTGPLHIGHLRNAI 141 (577)
T ss_pred EeCCCCCCCcccchhhhhH
Confidence 7888999999999988754
No 148
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.66 E-value=19 Score=38.64 Aligned_cols=38 Identities=32% Similarity=0.158 Sum_probs=28.6
Q ss_pred hhhhhhHHHhhhhhccccceeccccchH-HHH--HHHHHHH
Q 015509 186 ALLTYPVLMASDILLYQSDFVPVGEDQK-QHL--ELTRELA 223 (405)
Q Consensus 186 g~l~YPvLQAADIl~~~adlVpvG~DQ~-~hl--eLtRdia 223 (405)
|-=+=...||+|||-.+-|+--+|.|=+ ||+ |+|.--|
T Consensus 242 GWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA 282 (586)
T KOG2007|consen 242 GWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEA 282 (586)
T ss_pred CceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHH
Confidence 4445567899999999999999999976 565 5554443
No 149
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=33.21 E-value=28 Score=38.11 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=18.3
Q ss_pred CceEEEee-CCCCcchhhhHHHHH-----HHHHHhc
Q 015509 78 KKRIVSGV-QPTGSIHLGNYLGAI-----KNWIALQ 107 (405)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylg~i-----~~~~~lQ 107 (405)
++.+..|- -+||.||+||.+..+ ..|.+||
T Consensus 24 ~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~ 59 (601)
T PF00133_consen 24 KFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQ 59 (601)
T ss_dssp EEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCT
T ss_pred cEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhC
Confidence 35555554 357999999998743 4466666
No 150
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=33.17 E-value=8.2 Score=40.03 Aligned_cols=30 Identities=33% Similarity=0.421 Sum_probs=17.2
Q ss_pred ccCCccccCCCCcccccCCCCCCccccCCCCCCceeec
Q 015509 246 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 283 (405)
Q Consensus 246 f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L 283 (405)
++.|..++... .+. + +| +|||||. ++.|..
T Consensus 309 ~~lP~~i~~~~--~~~-~-~g-~K~SkS~---gn~i~~ 338 (391)
T PF09334_consen 309 LPLPRRIVVHG--FLT-L-DG-EKMSKSR---GNVIWP 338 (391)
T ss_dssp B---SEEEEE----EE-E-TT-CCEETTT---TESSBH
T ss_pred CCCCCEEEeee--eEE-E-CC-eeccccC---CcccCH
Confidence 57787776542 333 3 67 6999997 577854
No 151
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=32.44 E-value=2.1e+02 Score=32.25 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=36.8
Q ss_pred CCCceEE-EeeCCCCcchhhhHHHHH-----HHHHHhc---------cCCCc------------ChHH-HHHHHHHHHHH
Q 015509 76 SVKKRIV-SGVQPTGSIHLGNYLGAI-----KNWIALQ---------ITLPY------------DTQQ-LSKATRETAAI 127 (405)
Q Consensus 76 ~~~~~i~-sGi~PTG~lHLGnylg~i-----~~~~~lQ---------it~~~------------d~~~-l~~~~~~~~~~ 127 (405)
+.+.++| +|.-+=+.+||||....+ ..|.++. +|-.+ ++.. ...++.....+
T Consensus 246 ~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d 325 (699)
T PRK14535 246 PENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHED 325 (699)
T ss_pred CCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3445555 565555899999987744 3444433 23222 2222 34455667778
Q ss_pred HHHcCCCCCc
Q 015509 128 YLACGIDNSK 137 (405)
Q Consensus 128 ~lA~GiDp~k 137 (405)
+.++|+.+..
T Consensus 326 ~~~LnI~~p~ 335 (699)
T PRK14535 326 ADALGVLRPD 335 (699)
T ss_pred HHHcCCCCCc
Confidence 8889997664
No 152
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=32.09 E-value=30 Score=39.66 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=18.8
Q ss_pred ceEEEee-CCCCcchhhhHHHHH-----HHHHHhc
Q 015509 79 KRIVSGV-QPTGSIHLGNYLGAI-----KNWIALQ 107 (405)
Q Consensus 79 ~~i~sGi-~PTG~lHLGnylg~i-----~~~~~lQ 107 (405)
+.+.+|. -+||.+|+||.+... ..|.++|
T Consensus 38 f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~ 72 (874)
T PRK05729 38 FSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQ 72 (874)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhC
Confidence 4444433 357999999998742 4466666
No 153
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=32.01 E-value=52 Score=24.42 Aligned_cols=37 Identities=19% Similarity=0.426 Sum_probs=24.6
Q ss_pred CCccchHHHHHHhhCCCCHHHHHHHHhcCCcchHHHHHH
Q 015509 312 RPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLT 350 (405)
Q Consensus 312 rpev~nll~i~~~~t~~~~eel~~~y~~~~~gdlK~~La 350 (405)
|..+..++..+ -.+.+.+||.++|..+...+++.+|+
T Consensus 18 RI~v~~i~~~~--~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 18 RIPVRDILDLL--AAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp S-BHHHHHHHH--HTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred eecHHHHHHHH--HcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 44455555555 47899999999999899999888775
No 154
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.93 E-value=27 Score=39.99 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=15.3
Q ss_pred CCCcchhhhHHH-----HHHHHHHhc
Q 015509 87 PTGSIHLGNYLG-----AIKNWIALQ 107 (405)
Q Consensus 87 PTG~lHLGnylg-----~i~~~~~lQ 107 (405)
+||.+|+||.+. .|..+.++|
T Consensus 44 VTG~LHmGHAl~~tl~D~l~RykRM~ 69 (877)
T COG0525 44 VTGSLHMGHALNYTLQDILARYKRMR 69 (877)
T ss_pred CCCcccchhhhhHHHHHHHHHHHHcC
Confidence 389999999875 234566666
No 155
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=31.61 E-value=31 Score=39.50 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=20.1
Q ss_pred CceEEEee-CCCCcchhhhHHHHH-----HHHHHhc
Q 015509 78 KKRIVSGV-QPTGSIHLGNYLGAI-----KNWIALQ 107 (405)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylg~i-----~~~~~lQ 107 (405)
++.|++|. -+||.+|+||.+... ..|.++|
T Consensus 34 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~ 69 (861)
T TIGR00422 34 PFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMK 69 (861)
T ss_pred eEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhc
Confidence 35666654 357999999998633 4466666
No 156
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.19 E-value=31 Score=39.94 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=18.5
Q ss_pred ccccCCCCCCccccCCCCCCceeecCCCHHHHHHHh
Q 015509 259 RVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 294 (405)
Q Consensus 259 ~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI 294 (405)
++..- +| +|||||. +|.| +|.+|.+|.
T Consensus 594 fvlDe-~G-rKMSKSl---GN~v----~P~~V~~~y 620 (933)
T COG0060 594 FVLDE-KG-RKMSKSL---GNVV----DPQDVIDKY 620 (933)
T ss_pred cEECC-CC-CCccccC---CCcC----CHHHHHHhh
Confidence 56554 56 6999997 5676 566666653
No 157
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=29.81 E-value=34 Score=39.85 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=19.6
Q ss_pred CceEEEee-CCCCcchhhhHHHHH-----HHHHHhc
Q 015509 78 KKRIVSGV-QPTGSIHLGNYLGAI-----KNWIALQ 107 (405)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylg~i-----~~~~~lQ 107 (405)
++.|.+|. -|||.+|+||.++.. ..|.++|
T Consensus 61 ~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~ 96 (995)
T PTZ00419 61 KFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMK 96 (995)
T ss_pred eEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 35555554 357999999998743 3455555
No 158
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=28.36 E-value=37 Score=39.84 Aligned_cols=30 Identities=37% Similarity=0.487 Sum_probs=20.2
Q ss_pred CceEEEee-CCCCcchhhhHHHHH-----HHHHHhc
Q 015509 78 KKRIVSGV-QPTGSIHLGNYLGAI-----KNWIALQ 107 (405)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylg~i-----~~~~~lQ 107 (405)
++.|+.|. -+||.+|+||.++.. ..|.+++
T Consensus 49 ~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~ 84 (1052)
T PRK14900 49 PFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMS 84 (1052)
T ss_pred CEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhc
Confidence 46666665 357999999998632 3455555
No 159
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=26.78 E-value=1e+02 Score=36.95 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=15.3
Q ss_pred ceEEEee-CCCCcchhhhHHHH
Q 015509 79 KRIVSGV-QPTGSIHLGNYLGA 99 (405)
Q Consensus 79 ~~i~sGi-~PTG~lHLGnylg~ 99 (405)
+.++.|- -+||.||+||.+..
T Consensus 104 Fv~~~gPPyanG~lHiGHal~~ 125 (1205)
T PTZ00427 104 YIFYDGPPFATGLPHYGHLLAG 125 (1205)
T ss_pred EEEecCCCCCCCCcchhHHHHH
Confidence 5556664 35699999999863
No 160
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.20 E-value=4e+02 Score=25.49 Aligned_cols=67 Identities=6% Similarity=0.107 Sum_probs=43.3
Q ss_pred HHHHHHHHhc-CCcchHHHHHHHHHHHHhhH-HHHHHHHHhcCHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 015509 330 KGEVAEECQN-MNWGTFKPLLTDALIEHLHP-IQVRYEEIMSDSAYLDKVLADGAA--KAADIADATLNNVYQ 398 (405)
Q Consensus 330 ~eel~~~y~~-~~~gdlK~~Lae~i~~~L~p-irer~~e~~~~~~~l~~iL~~Ga~--kAr~iA~~tl~~Vr~ 398 (405)
+|+|.++|.. .+- ..-.++|.++++.+.+ ..++.+.++++|+ ++.+-+--++ +.+.+--+++++|.+
T Consensus 80 Le~Ik~~F~k~YG~-~a~ta~AysmN~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~vM~eNIekvld 150 (217)
T KOG0859|consen 80 LERIKEDFKKRYGG-GAHTAVAYSMNKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKGVMMENIEKVLD 150 (217)
T ss_pred HHHHHHHHHHHhcc-chhHHHHhHhHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667776641 111 2566899999988877 5677888888887 8887664443 345555555555544
No 161
>PF15605 Toxin_52: Putative toxin 52
Probab=24.67 E-value=99 Score=26.32 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=26.4
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 015509 364 YEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAM 400 (405)
Q Consensus 364 ~~e~~~~~~~l~~iL~~Ga~kAr~iA~~tl~~Vr~a~ 400 (405)
.+..+.||. +++..++-++++...|..+|++|.+.+
T Consensus 66 le~~L~np~-l~~~~r~~lq~~l~ea~~~l~kiE~~~ 101 (103)
T PF15605_consen 66 LEGSLKNPN-LSGRTRELLQSKLNEANNYLDKIEDFF 101 (103)
T ss_pred HHHhcCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333356663 566667777888899999999998865
No 162
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.10 E-value=2.5e+02 Score=30.08 Aligned_cols=67 Identities=15% Similarity=0.338 Sum_probs=38.5
Q ss_pred CCCCcchhhhHHHHH-----HHHHHhc-----cCC----------------C-cChHHHHHHHHHHHHHHHHcCCCCCce
Q 015509 86 QPTGSIHLGNYLGAI-----KNWIALQ-----ITL----------------P-YDTQQLSKATRETAAIYLACGIDNSKA 138 (405)
Q Consensus 86 ~PTG~lHLGnylg~i-----~~~~~lQ-----it~----------------~-~d~~~l~~~~~~~~~~~lA~GiDp~k~ 138 (405)
-|-..+||||+...+ ..|-.|. .+. . .+++.+.....+....|.+.|+.-.+
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~- 127 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTK- 127 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhh-
Confidence 466789999977654 3343332 111 1 23444566667788889999987543
Q ss_pred EEEEcCCchhhh---HHHHH
Q 015509 139 SVFVQSHVRAHV---ELMWL 155 (405)
Q Consensus 139 ~if~qS~v~~h~---el~w~ 155 (405)
|+-..-|.|. ..+|.
T Consensus 128 --FIRTTdpkH~a~Vqefw~ 145 (578)
T KOG0436|consen 128 --FIRTTDPKHEAIVQEFWA 145 (578)
T ss_pred --eeecCCchHHHHHHHHHH
Confidence 4434444443 34554
No 163
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=23.95 E-value=51 Score=37.69 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=16.7
Q ss_pred CceEEEee-CCCCcchhhhHHHH
Q 015509 78 KKRIVSGV-QPTGSIHLGNYLGA 99 (405)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylg~ 99 (405)
++.++.|. -|||.+|+||.+.-
T Consensus 37 ~f~i~~~pPy~nG~lH~GH~~~~ 59 (861)
T TIGR00392 37 EFIFHDGPPYANGSIHLGHALNK 59 (861)
T ss_pred CeEEecCCCCCCCCccHHHHHHH
Confidence 57777777 23499999999863
No 164
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.90 E-value=62 Score=37.19 Aligned_cols=74 Identities=22% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhcccCCCCCCcccCCCCCCccchHHH
Q 015509 241 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLS 320 (405)
Q Consensus 241 ~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~ 320 (405)
+|...| -+.++++ +|-.- .| .|||||. .|+++
T Consensus 572 tG~lPF--~~V~LH~---mVRDa-~G-RKMSKSL-----------------------------------------GNVID 603 (995)
T KOG0432|consen 572 TGELPF--KEVLLHG---LVRDA-HG-RKMSKSL-----------------------------------------GNVID 603 (995)
T ss_pred cCCCCc--hheeech---hhccc-cc-cccchhh-----------------------------------------ccccC
Q ss_pred HHHhhCCCCHHHHHHHHh--cCCcchHHHHHHHHHHHHhhHHHH
Q 015509 321 IYQLISGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQV 362 (405)
Q Consensus 321 i~~~~t~~~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~pire 362 (405)
=+..+++-++|.+.+... .+.+.|++++-+..-.++=..|-+
T Consensus 604 PlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpe 647 (995)
T KOG0432|consen 604 PLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPE 647 (995)
T ss_pred HHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcc
No 165
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=23.81 E-value=1.6e+02 Score=30.06 Aligned_cols=61 Identities=34% Similarity=0.438 Sum_probs=46.9
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHhc-cC-----------CCcChHHHHHHHHHHHHHHHHcCCCCCceEEEE----
Q 015509 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ-IT-----------LPYDTQQLSKATRETAAIYLACGIDNSKASVFV---- 142 (405)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylg~i~~~~~lQ-it-----------~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~---- 142 (405)
...+.-+.||...+=|-.+| +-+++| ++ .-+..-++.+.+++.++.+-|.|+|. |++
T Consensus 81 rVaVlAVDPSSp~TGGsiLG---DRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~Dv----IIVETVG 153 (323)
T COG1703 81 RVAVLAVDPSSPFTGGSILG---DRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDV----IIVETVG 153 (323)
T ss_pred EEEEEEECCCCCCCCccccc---cHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCE----EEEEecC
Confidence 35678899999999887776 455666 22 23567789999999999999999983 454
Q ss_pred --cCCc
Q 015509 143 --QSHV 146 (405)
Q Consensus 143 --qS~v 146 (405)
|||+
T Consensus 154 vGQsev 159 (323)
T COG1703 154 VGQSEV 159 (323)
T ss_pred CCcchh
Confidence 8886
No 166
>PLN02381 valyl-tRNA synthetase
Probab=23.80 E-value=52 Score=38.79 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=20.3
Q ss_pred CceEEEee-CCCCcchhhhHHHH-----HHHHHHhc
Q 015509 78 KKRIVSGV-QPTGSIHLGNYLGA-----IKNWIALQ 107 (405)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylg~-----i~~~~~lQ 107 (405)
++.|.+|. -+||.||+||.+.. +..|.+++
T Consensus 129 ~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~ 164 (1066)
T PLN02381 129 PFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMS 164 (1066)
T ss_pred cEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhC
Confidence 35666665 35799999999863 34465565
No 167
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.65 E-value=1.1e+02 Score=34.80 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHH
Q 015509 347 PLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGA 382 (405)
Q Consensus 347 ~~Lae~i~~~L~pirer~~e~~~~~~~l~~iL~~Ga 382 (405)
+.+...++..++--++.|+.- ..+++|+.|-
T Consensus 789 rvf~nemN~~i~~t~~aye~~-----~fk~aLK~Gf 819 (1080)
T KOG0437|consen 789 RVFENEMNALIAKTERAYEDT-----LFKDALKYGF 819 (1080)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-----HHHHHHHhhh
Confidence 455666677766665555543 2566776664
No 168
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=23.18 E-value=1.6e+02 Score=24.94 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015509 358 HPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQA 399 (405)
Q Consensus 358 ~pirer~~e~~~~~~~l~~iL~~Ga~kAr~iA~~tl~~Vr~a 399 (405)
...|+-|..+.-.-+..++.+.+|.-.+...|-+++..+|..
T Consensus 53 kdyrhGfd~li~~iD~a~klaqeGnl~eAKaaak~l~d~Rn~ 94 (100)
T COG3783 53 KDYRHGFDILIGQIDKADKLAQEGNLDEAKAAAKTLKDTRNT 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 357788888877777788888999999999999999998864
No 169
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=22.99 E-value=2.5e+02 Score=29.33 Aligned_cols=59 Identities=14% Similarity=0.074 Sum_probs=35.4
Q ss_pred CceEE-EeeCCCCcchhhhHHHHH-----HHHHHhc---------cCCCc------------ChHH-HHHHHHHHHHHHH
Q 015509 78 KKRIV-SGVQPTGSIHLGNYLGAI-----KNWIALQ---------ITLPY------------DTQQ-LSKATRETAAIYL 129 (405)
Q Consensus 78 ~~~i~-sGi~PTG~lHLGnylg~i-----~~~~~lQ---------it~~~------------d~~~-l~~~~~~~~~~~l 129 (405)
+.++| +|--|=+.+||||..+.+ ..|.+++ +|-.+ +++. ..+.+.....++.
T Consensus 9 ~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~ 88 (384)
T PRK12418 9 TATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDME 88 (384)
T ss_pred eeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34444 566666999999988744 4455544 22222 2322 3445566778888
Q ss_pred HcCC-CCC
Q 015509 130 ACGI-DNS 136 (405)
Q Consensus 130 A~Gi-Dp~ 136 (405)
++|+ .|+
T Consensus 89 ~Lni~~~~ 96 (384)
T PRK12418 89 ALRVLPPR 96 (384)
T ss_pred HhCCCCCC
Confidence 8996 554
No 170
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=21.75 E-value=4.4e+02 Score=28.54 Aligned_cols=72 Identities=10% Similarity=0.141 Sum_probs=49.5
Q ss_pred CHHHHHHHHh--cCCcchHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCC
Q 015509 329 TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAA--KAADIADATLNNVYQAMGFL 403 (405)
Q Consensus 329 ~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~pirer~~e~~~~~~~l~~iL~~Ga~--kAr~iA~~tl~~Vr~a~Gl~ 403 (405)
.-.+|.+.|+ .++.+++=..|...|+=.+=-+++......+ .+.+.-+.-.+ ++.+.+.......-+.+|+.
T Consensus 96 ~W~~Iv~~yeK~n~~L~E~a~~L~r~v~YeIP~lkKqi~k~~q---~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~ 171 (507)
T PF05600_consen 96 DWQEIVKLYEKDNLYLAEAAQILVRNVNYEIPALKKQIAKCQQ---QLEDLDKKEEELQRSAAEARERYKKACKQLGIK 171 (507)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcccchHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 4578899997 5899999888888887777667666555443 34444443333 56666777777777777764
No 171
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=21.75 E-value=1.3e+02 Score=32.77 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=16.3
Q ss_pred EEeeCCCCcchhhhHHHHH
Q 015509 82 VSGVQPTGSIHLGNYLGAI 100 (405)
Q Consensus 82 ~sGi~PTG~lHLGnylg~i 100 (405)
|+.==|||.+|+||.-+++
T Consensus 119 ~sSpNp~kplHvGH~R~ai 137 (562)
T PRK12451 119 YSSPNIAKPFSMGHLRSTM 137 (562)
T ss_pred ecCCCCCCCcccchhhhHH
Confidence 6888999999999987654
No 172
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=21.48 E-value=59 Score=37.88 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=20.1
Q ss_pred CceEEEee-CCCCcchhhhHHHH-----HHHHHHhc
Q 015509 78 KKRIVSGV-QPTGSIHLGNYLGA-----IKNWIALQ 107 (405)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylg~-----i~~~~~lQ 107 (405)
++.++.|. -+||.||+||.+.- +..+.+++
T Consensus 42 ~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~ 77 (975)
T PRK06039 42 EFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMK 77 (975)
T ss_pred CEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhC
Confidence 46666665 35799999999863 23355555
No 173
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=20.95 E-value=56 Score=37.93 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=18.3
Q ss_pred CceEEEee-CCCCcchhhhHHHHH-----HHHHHhc
Q 015509 78 KKRIVSGV-QPTGSIHLGNYLGAI-----KNWIALQ 107 (405)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylg~i-----~~~~~lQ 107 (405)
++.+..|. -+||.+|+||.++.. ..+.+++
T Consensus 26 kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~ 61 (938)
T TIGR00395 26 KFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMK 61 (938)
T ss_pred ceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhc
Confidence 34444443 246999999998633 3355555
No 174
>PLN02843 isoleucyl-tRNA synthetase
Probab=20.90 E-value=62 Score=37.74 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=19.2
Q ss_pred CceEEEee-CCCCcchhhhHHHHH-----HHHHHhc
Q 015509 78 KKRIVSGV-QPTGSIHLGNYLGAI-----KNWIALQ 107 (405)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylg~i-----~~~~~lQ 107 (405)
++.+..|. -+||.+||||.+..+ ..|.+++
T Consensus 33 ~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~ 68 (974)
T PLN02843 33 SFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQ 68 (974)
T ss_pred CEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 35555554 357999999998743 3455555
No 175
>PF12057 DUF3538: Domain of unknown function (DUF3538); InterPro: IPR021925 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain is found associated with PF00240 from PFAM. This domain has a conserved SDL sequence motif.
Probab=20.81 E-value=64 Score=28.25 Aligned_cols=46 Identities=20% Similarity=0.405 Sum_probs=30.1
Q ss_pred HHHHHhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 015509 352 ALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAM 400 (405)
Q Consensus 352 ~i~~~L~pirer~~e~~~~~~~l~~iL~~Ga~kAr~iA~~tl~~Vr~a~ 400 (405)
.+.+.|+|+.+||.+++.+..-.+ . +....-|+-++.+++.|-+++
T Consensus 10 ~vq~RL~Pflery~~iL~~~~~~e-~--~~~~~~re~~QRi~d~VsEal 55 (120)
T PF12057_consen 10 RVQERLQPFLERYHEILQEDPSFE-Y--ENNTQEREEDQRIFDLVSEAL 55 (120)
T ss_pred HHHHHHhHHHHHHHHHHhcCCCCC-C--CCCccchhhHhHHHHHHHHHH
Confidence 467889999999999987653222 1 122233566777777776665
No 176
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=20.74 E-value=4e+02 Score=26.92 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=30.4
Q ss_pred CceEE-EeeCCCCcchhhhHHHHH-----HHHHHhc---------cCCCc------------ChHH-HHHHHHHHHHHHH
Q 015509 78 KKRIV-SGVQPTGSIHLGNYLGAI-----KNWIALQ---------ITLPY------------DTQQ-LSKATRETAAIYL 129 (405)
Q Consensus 78 ~~~i~-sGi~PTG~lHLGnylg~i-----~~~~~lQ---------it~~~------------d~~~-l~~~~~~~~~~~l 129 (405)
..++| +|.-+=..+||||+-..+ ..+++.. ||-.+ ++.+ .+..+.+...++.
T Consensus 8 ~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~ 87 (300)
T PF01406_consen 8 KVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMK 87 (300)
T ss_dssp EEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 44555 677777899999987654 3343332 44322 2222 2444566677788
Q ss_pred HcCCCCC
Q 015509 130 ACGIDNS 136 (405)
Q Consensus 130 A~GiDp~ 136 (405)
++|+.|-
T Consensus 88 ~Lnv~~p 94 (300)
T PF01406_consen 88 ALNVLPP 94 (300)
T ss_dssp HTT----
T ss_pred HcCCCCC
Confidence 8888754
No 177
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=20.73 E-value=53 Score=25.76 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=18.9
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHh
Q 015509 332 EVAEECQNMNWGTFKPLLTDALIEHL 357 (405)
Q Consensus 332 el~~~y~~~~~gdlK~~Lae~i~~~L 357 (405)
||..+|.+...-|+|+.|+|.+...+
T Consensus 1 eLC~dYse~tFtEyKKrL~e~l~~k~ 26 (68)
T PF09164_consen 1 ELCADYSENTFTEYKKRLAERLRAKL 26 (68)
T ss_dssp HHTTTTTTS-HHHHHHHHHHHHHHH-
T ss_pred CcchhhhhccHHHHHHHHHHHHHHHC
Confidence 45667777888899999998876554
Done!