Query 015509
Match_columns 405
No_of_seqs 182 out of 1337
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 13:51:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n9i_A Tryptophanyl-tRNA synth 100.0 4.9E-91 1.7E-95 697.1 33.7 314 78-404 15-344 (346)
2 3sz3_A Tryptophanyl-tRNA synth 100.0 2.4E-91 8.1E-96 698.7 30.9 317 78-404 6-339 (341)
3 3prh_A Tryptophanyl-tRNA synth 100.0 6.3E-91 2.2E-95 704.8 33.3 311 79-404 36-360 (388)
4 1i6k_A TRPRS, tryptophanyl-tRN 100.0 4.1E-86 1.4E-90 658.7 33.3 312 79-405 2-327 (328)
5 2yy5_A Tryptophanyl-tRNA synth 100.0 5E-86 1.7E-90 662.7 28.5 312 78-403 4-343 (348)
6 3tzl_A Tryptophanyl-tRNA synth 100.0 2.3E-84 7.8E-89 644.6 32.0 303 78-402 3-322 (322)
7 2el7_A Tryptophanyl-tRNA synth 100.0 2.3E-82 8E-87 633.7 31.7 306 79-403 2-328 (337)
8 1yi8_B Tryptophanyl-tRNA synth 100.0 6.2E-82 2.1E-86 633.7 33.1 315 72-404 16-350 (351)
9 2g36_A Tryptophanyl-tRNA synth 100.0 3.3E-82 1.1E-86 633.3 29.0 306 77-403 11-339 (340)
10 3jxe_A Tryptophanyl-tRNA synth 100.0 7.8E-68 2.7E-72 537.2 21.7 275 76-384 71-371 (392)
11 3a04_A Tryptophanyl-tRNA synth 100.0 5.3E-65 1.8E-69 514.3 19.2 267 76-378 68-367 (372)
12 3vgj_A Tyrosyl-tRNA synthetase 100.0 8E-63 2.8E-67 498.4 25.7 267 77-377 55-366 (373)
13 2cyc_A Tyrosyl-tRNA synthetase 100.0 4.2E-63 1.4E-67 501.0 18.5 262 77-368 32-362 (375)
14 2j5b_A Tyrosyl-tRNA synthetase 100.0 1.2E-62 4.1E-67 493.4 20.8 254 77-367 39-331 (348)
15 2ip1_A Tryptophanyl-tRNA synth 100.0 2.7E-64 9.2E-69 517.4 8.5 289 77-397 101-432 (432)
16 3tze_A Tryptophanyl-tRNA synth 100.0 1.3E-62 4.4E-67 500.7 20.5 263 76-370 99-395 (406)
17 3hzr_A Tryptophanyl-tRNA synth 100.0 1E-62 3.6E-67 498.8 19.6 268 76-377 80-380 (386)
18 2cya_A Tyrosyl-tRNA synthetase 100.0 2.1E-62 7.2E-67 494.2 21.1 255 77-367 34-348 (364)
19 3p0j_A Tyrosyl-tRNA synthetase 100.0 6.6E-61 2.3E-65 516.0 24.7 277 77-379 39-360 (690)
20 3hv0_A Tryptophanyl-tRNA synth 100.0 2.4E-61 8.1E-66 490.1 19.0 269 77-378 73-378 (393)
21 3i05_A Tryptophanyl-tRNA synth 100.0 4.3E-62 1.5E-66 495.8 13.5 277 76-386 76-393 (395)
22 3foc_A Tryptophanyl-tRNA synth 100.0 6.1E-61 2.1E-65 492.7 18.3 269 76-377 89-444 (451)
23 2cyb_A Tyrosyl-tRNA synthetase 100.0 2.3E-58 8E-63 457.9 22.5 250 77-366 31-321 (323)
24 1r6u_A Tryptophanyl-tRNA synth 100.0 5.1E-58 1.8E-62 470.7 16.0 269 76-378 106-414 (437)
25 2zp1_A Tyrosyl-tRNA synthetase 100.0 1.1E-56 3.7E-61 444.6 22.7 244 76-366 26-308 (314)
26 1r6t_A Tryptophanyl-tRNA synth 100.0 1.9E-57 6.6E-62 471.6 16.3 261 77-369 154-454 (477)
27 2dlc_X Tyrosyl-tRNA synthetase 100.0 2.6E-56 8.9E-61 454.1 21.0 264 77-381 38-354 (394)
28 1n3l_A Tyrosyl-tRNA synthetase 100.0 1.7E-55 5.7E-60 445.2 21.8 251 77-365 34-329 (372)
29 1h3f_A Tyrosyl-tRNA synthetase 100.0 1.2E-55 4.2E-60 453.2 17.0 272 77-396 36-345 (432)
30 2yxn_A Tyrosyl-tRNA synthetase 100.0 1.3E-54 4.3E-59 431.1 16.9 248 77-365 32-319 (322)
31 2jan_A Tyrosyl-tRNA synthetase 100.0 2.6E-51 8.9E-56 420.5 19.0 247 77-365 31-316 (432)
32 2pid_A Tyrosyl-tRNA synthetase 100.0 1.6E-51 5.5E-56 413.7 15.6 246 77-365 45-338 (356)
33 1y42_X Tyrosyl-tRNA synthetase 100.0 1.9E-49 6.5E-54 403.0 19.3 260 77-366 63-378 (392)
34 2ts1_A Tyrosyl-tRNA synthetase 100.0 1.1E-49 3.9E-54 407.4 15.3 249 77-366 29-315 (419)
35 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 7.5E-49 2.6E-53 401.9 19.7 244 77-365 31-315 (420)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 2.2E-44 7.6E-49 387.7 23.6 249 71-365 375-669 (690)
37 1nzj_A Hypothetical protein YA 99.1 2.6E-11 9E-16 118.9 6.0 166 86-275 13-234 (298)
38 2ja2_A Glutamyl-tRNA synthetas 99.1 4.7E-10 1.6E-14 117.0 12.2 189 86-296 14-286 (498)
39 3afh_A Glutamyl-tRNA synthetas 99.0 3.1E-10 1.1E-14 118.1 7.9 190 80-296 27-284 (488)
40 1j09_A Glutamyl-tRNA synthetas 98.9 4.3E-10 1.5E-14 116.5 5.0 186 86-296 9-272 (468)
41 2cfo_A Glutamyl-tRNA synthetas 98.8 2.9E-08 9.8E-13 103.5 14.1 187 84-296 7-276 (492)
42 3al0_C Glutamyl-tRNA(Gln) amid 98.7 1.2E-09 4.1E-14 116.1 0.1 191 79-296 130-388 (592)
43 2o5r_A Glutamyl-tRNA synthetas 98.3 5.5E-06 1.9E-10 86.1 13.5 191 79-296 14-291 (481)
44 4g6z_A Glutamate-tRNA ligase; 98.2 1.8E-05 6E-10 82.4 14.8 89 78-167 25-130 (490)
45 3aii_A Glutamyl-tRNA synthetas 97.7 0.0001 3.4E-09 77.6 10.6 168 81-274 97-334 (553)
46 4gri_A Glutamate--tRNA ligase; 97.3 0.00056 1.9E-08 71.5 9.2 172 81-275 25-279 (512)
47 2csx_A Methionyl-tRNA syntheta 97.1 0.00065 2.2E-08 70.2 7.2 66 78-145 5-99 (497)
48 2d5b_A Methionyl-tRNA syntheta 97.1 0.0013 4.6E-08 67.8 9.4 65 79-145 4-97 (500)
49 4dlp_A Aminoacyl-tRNA syntheta 97.1 0.0027 9.3E-08 66.3 11.3 66 78-145 25-119 (536)
50 1qtq_A GLNRS, protein (glutami 95.5 0.011 3.6E-07 62.3 4.9 86 80-166 28-130 (553)
51 3tqo_A Cysteinyl-tRNA syntheta 95.5 0.019 6.4E-07 59.3 6.6 57 81-137 29-112 (462)
52 2hz7_A Glutaminyl-tRNA synthet 95.2 0.016 5.5E-07 63.7 5.2 85 81-166 67-170 (851)
53 1iq0_A Arginyl-tRNA synthetase 95.0 0.015 5E-07 61.7 4.2 28 80-107 107-139 (592)
54 2zue_A Arginyl-tRNA synthetase 92.5 0.11 3.9E-06 55.3 5.5 26 82-107 125-155 (629)
55 1irx_A Lysyl-tRNA synthetase; 91.0 0.14 4.6E-06 53.4 3.9 65 78-145 21-129 (523)
56 3h99_A Methionyl-tRNA syntheta 86.8 1.2 4.3E-05 46.3 7.6 65 78-144 19-111 (560)
57 3u1f_A Methionyl-tRNA syntheta 86.3 2.1 7E-05 44.2 8.9 72 78-152 10-109 (542)
58 2x1l_A Methionyl-tRNA syntheta 84.7 0.26 8.9E-06 51.0 1.1 57 87-145 23-106 (524)
59 3kfl_A Methionyl-tRNA syntheta 83.8 3.4 0.00012 43.2 9.2 64 80-145 28-120 (564)
60 3kfl_A Methionyl-tRNA syntheta 83.6 0.33 1.1E-05 50.9 1.4 56 201-284 293-351 (564)
61 3u1f_A Methionyl-tRNA syntheta 83.2 0.41 1.4E-05 49.6 1.9 53 203-283 279-334 (542)
62 1wkb_A Leucyl-tRNA synthetase; 80.8 0.6 2.1E-05 51.0 2.2 60 201-284 602-662 (810)
63 1li5_A Cysrs, cysteinyl-tRNA s 78.6 1 3.5E-05 46.1 3.0 78 194-296 212-295 (461)
64 1gax_A Valrs, valyl-tRNA synth 78.6 0.62 2.1E-05 51.5 1.4 60 201-284 480-540 (862)
65 4arc_A Leucine--tRNA ligase; l 78.4 4.6 0.00016 44.7 8.2 59 78-136 54-140 (880)
66 3c8z_A Cysteinyl-tRNA syntheta 78.3 0.68 2.3E-05 46.6 1.5 64 80-145 42-133 (414)
67 1wz2_A Leucyl-tRNA synthetase; 78.1 0.83 2.8E-05 51.1 2.2 71 201-295 602-678 (967)
68 1ffy_A Isoleucyl-tRNA syntheta 77.4 1 3.4E-05 50.1 2.7 58 200-284 546-607 (917)
69 1rqg_A Methionyl-tRNA syntheta 77.4 4.7 0.00016 43.5 7.9 60 78-137 3-91 (722)
70 3fnr_A Arginyl-tRNA synthetase 76.0 0.39 1.3E-05 49.4 -1.1 61 203-285 235-298 (464)
71 1ile_A Ilers, isoleucyl-tRNA s 75.6 1.2 4E-05 48.9 2.5 72 201-296 543-620 (821)
72 3h99_A Methionyl-tRNA syntheta 72.9 1.2 4.1E-05 46.5 1.6 43 246-296 327-374 (560)
73 2x1l_A Methionyl-tRNA syntheta 72.4 6.3 0.00021 40.5 7.0 14 201-214 264-277 (524)
74 3c8z_A Cysteinyl-tRNA syntheta 72.1 11 0.00038 37.7 8.5 30 194-223 236-266 (414)
75 1irx_A Lysyl-tRNA synthetase; 63.0 2.2 7.6E-05 44.2 1.2 71 201-296 229-308 (523)
76 3sp1_A Cysteinyl-tRNA syntheta 60.6 3.2 0.00011 43.1 1.8 60 78-137 42-139 (501)
77 2v0c_A Aminoacyl-tRNA syntheta 60.0 4.1 0.00014 45.1 2.7 25 201-225 530-555 (878)
78 2v0c_A Aminoacyl-tRNA syntheta 57.3 15 0.00051 40.5 6.6 59 78-136 34-120 (878)
79 3foc_A Tryptophanyl-tRNA synth 56.0 2.7 9.3E-05 43.0 0.4 14 205-218 236-249 (451)
80 4arc_A Leucine--tRNA ligase; l 54.5 7.5 0.00026 43.0 3.7 26 201-226 542-568 (880)
81 3sp1_A Cysteinyl-tRNA syntheta 48.7 37 0.0013 35.1 7.6 30 193-222 244-274 (501)
82 1li5_A Cysrs, cysteinyl-tRNA s 44.1 35 0.0012 34.6 6.5 66 79-145 23-116 (461)
83 1ile_A Ilers, isoleucyl-tRNA s 34.8 15 0.00052 40.0 2.2 30 78-107 39-74 (821)
84 1gax_A Valrs, valyl-tRNA synth 34.5 17 0.00057 40.1 2.4 30 78-107 35-70 (862)
85 1ffy_A Isoleucyl-tRNA syntheta 33.5 18 0.00061 40.2 2.4 30 78-107 49-84 (917)
86 1wkb_A Leucyl-tRNA synthetase; 33.2 17 0.00058 39.5 2.2 29 79-107 36-70 (810)
87 1wz2_A Leucyl-tRNA synthetase; 32.5 19 0.00065 40.1 2.4 30 78-107 35-70 (967)
88 1rqg_A Methionyl-tRNA syntheta 32.4 8.5 0.00029 41.5 -0.4 44 246-297 326-374 (722)
89 1f7u_A Arginyl-tRNA synthetase 29.4 20 0.00067 38.0 1.8 57 201-285 362-420 (607)
90 2ga1_A Protein of unknown func 23.3 75 0.0026 25.9 3.9 40 311-352 50-89 (106)
No 1
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=4.9e-91 Score=697.08 Aligned_cols=314 Identities=47% Similarity=0.751 Sum_probs=298.7
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHhc--------------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 015509 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 143 (405)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ--------------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~q 143 (405)
+++||||++|||.||||||+|+|++|++|| +|..++++.+++++++++++|+|+||||+|++||+|
T Consensus 15 ~~~i~sG~~PTG~lHLGh~vg~l~~~~~lQ~~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~q 94 (346)
T 3n9i_A 15 KPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQ 94 (346)
T ss_dssp CCEEEEEECSCSCCBHHHHHHTHHHHHTTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEG
T ss_pred CCEEEECcCCCCcccHHHHHHHHHHHHHHHhhCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEec
Confidence 579999999999999999999999999999 455789999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchHHHHHHHHHHH
Q 015509 144 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 223 (405)
Q Consensus 144 S~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLtRdia 223 (405)
|+|++|.+++|+|+|++++++|+|+++||++..+.+ +++++|+|+||+|||||||+|++|+||||.||+||+|||||||
T Consensus 95 S~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltRdia 173 (346)
T 3n9i_A 95 SHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIA 173 (346)
T ss_dssp GGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHSG-GGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHhhHHHHHHHHHHHHHHhccC-CCCCchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHHHHH
Confidence 999999999999999999999999999999876654 6789999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhcccCCCCC
Q 015509 224 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 303 (405)
Q Consensus 224 ~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~Td~~~ 303 (405)
+|||++|| .+|++|++++++++++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+..
T Consensus 174 ~rfn~~yg------------~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~kA~Td~~~ 241 (346)
T 3n9i_A 174 SRFNNLYG------------DIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDE 241 (346)
T ss_dssp HHHHHHHS------------SCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHTCCCCCCS
T ss_pred HHhccccC------------CcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHhCcCCCCC
Confidence 99999998 568999999987667999998898899999987779999999999999999999999987
Q ss_pred --CcccCCCCCCccchHHHHHHhhCCCCHHHHHHHHhcCCcchHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHH
Q 015509 304 --GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADG 381 (405)
Q Consensus 304 --~i~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~~~~~gdlK~~Lae~i~~~L~pirer~~e~~~~~~~l~~iL~~G 381 (405)
.+.++++++|+++|++.||..++++++++++++|++.++|+||+.|+++|+++|+|||+||+++++|+++|++||++|
T Consensus 242 ~~~~~~~~~~~p~v~~l~~~~~~~~~~~~eel~~~y~~~~~g~lK~~lae~l~~~L~pirer~~~~~~~~~~l~~il~~G 321 (346)
T 3n9i_A 242 PALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGMLSELQERYRTYREDEALLQDVMREG 321 (346)
T ss_dssp SCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CccccCCCCCCCChhHHHHHHHhcCCccHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 356788899999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Q 015509 382 AAKAADIADATLNNVYQAMGFLR 404 (405)
Q Consensus 382 a~kAr~iA~~tl~~Vr~a~Gl~~ 404 (405)
++|||++|++||++||++|||.+
T Consensus 322 ~~kA~~~A~~tl~~v~~~~g~~~ 344 (346)
T 3n9i_A 322 AAKARARAQVTLAKVYEAIGFVA 344 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999975
No 2
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=2.4e-91 Score=698.75 Aligned_cols=317 Identities=44% Similarity=0.729 Sum_probs=299.2
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHhc--------------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 015509 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 143 (405)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ--------------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~q 143 (405)
+++||||++|||.||||||+|+|++|++|| +|.+.+++.+++++++++++|+||||||+|++||+|
T Consensus 6 ~~~v~sG~~PTG~lHLGhy~g~l~~~~~lQ~~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~q 85 (341)
T 3sz3_A 6 KPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFVQ 85 (341)
T ss_dssp SCEEEEEECSSSCCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred CCEEEeCcCCCCcccHHHHHHHHHHHHHHHhcCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEec
Confidence 469999999999999999999999999999 456789999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchHHHHHHHHHHH
Q 015509 144 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 223 (405)
Q Consensus 144 S~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLtRdia 223 (405)
|+|++|.+|+|+|+|++++++|+|+++||++..+.+ +++++|+|+||+|||||||+|++|+||||.||+||+|||||||
T Consensus 86 S~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia 164 (341)
T 3sz3_A 86 SHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA-NDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIA 164 (341)
T ss_dssp GGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG-GGCCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc-CCCChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHH
Confidence 999999999999999999999999999999887664 6789999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhcccCCCCC
Q 015509 224 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 303 (405)
Q Consensus 224 ~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~Td~~~ 303 (405)
+|||++||.. .++|++|+++++..+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+
T Consensus 165 ~rfn~~yg~~---------~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~a~Td~~~ 235 (341)
T 3sz3_A 165 TRFNNIYSPE---------QPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQTDAET 235 (341)
T ss_dssp HHHHHHHCSS---------SCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHTCCCCCCS
T ss_pred HHhchhccCC---------CcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCC
Confidence 9999999831 1358999999986557999998888899999997789999999999999999999999987
Q ss_pred --CcccCCCCCCccchHHHHHHhhCCCCHHHHHHHHhc-CCcchHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHH
Q 015509 304 --GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN-MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLAD 380 (405)
Q Consensus 304 --~i~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~~-~~~gdlK~~Lae~i~~~L~pirer~~e~~~~~~~l~~iL~~ 380 (405)
.+.++++++|+++|+|.||.+|+++++++++++|.+ ++|++||+.|+++|+++|+|||+||+++++|+++|++||++
T Consensus 236 ~~~~~~~~~~~p~v~~l~~~~~~~~~~~~e~i~~~~~g~~~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~l~~il~~ 315 (341)
T 3sz3_A 236 PPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRD 315 (341)
T ss_dssp SCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CcccccCCCCCcchhHHHHHHHHcCCccHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 466788999999999999999999999999999986 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCC
Q 015509 381 GAAKAADIADATLNNVYQAMGFLR 404 (405)
Q Consensus 381 Ga~kAr~iA~~tl~~Vr~a~Gl~~ 404 (405)
|++|||++|++||++||++|||.+
T Consensus 316 G~~kA~~~A~~tl~~v~~~~g~~~ 339 (341)
T 3sz3_A 316 GAEKASAKALQTLKKVYAAVGFVA 339 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999975
No 3
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=6.3e-91 Score=704.83 Aligned_cols=311 Identities=47% Similarity=0.756 Sum_probs=290.0
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHhc--------------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcC
Q 015509 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 144 (405)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylg~i~~~~~lQ--------------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS 144 (405)
.+||||++|||.+|||||+|+|++|++|| +|.+.+++.+++++++++++|+||||||+|++||+||
T Consensus 36 ~ri~sG~~PTG~lHLGhyvGal~~~~~LQ~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~qS 115 (388)
T 3prh_A 36 QTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQS 115 (388)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred CeEEEeeCCCCcchHHHHHHHHHHHHHHHccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEecc
Confidence 45999999999999999999999999999 5668899999999999999999999999999999999
Q ss_pred CchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchHHHHHHHHHHHH
Q 015509 145 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 224 (405)
Q Consensus 145 ~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLtRdia~ 224 (405)
+|++|+|++|+|+|.++++||+|+++||++.+.. +++++|+|+||+|||||||+|++|+||||+||+||+|||||||+
T Consensus 116 ~v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia~ 193 (388)
T 3prh_A 116 EVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAE 193 (388)
T ss_dssp GSTHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887654 67899999999999999999999999999999999999999999
Q ss_pred HHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhcccCCCCCC
Q 015509 225 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304 (405)
Q Consensus 225 r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~Td~~~~ 304 (405)
|||+.|| .+|..|+++++..+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+.
T Consensus 194 rfn~~y~------------~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~ka~TD~~~~ 261 (388)
T 3prh_A 194 RFNKKYN------------DIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDSEGI 261 (388)
T ss_dssp HHHHHTC------------SCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHTCCCCSSCC
T ss_pred HhCcccC------------CCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhhccCCCCCc
Confidence 9999998 5689999999876689999988888999999988899999999999999999999999988
Q ss_pred cccCCCCCCccchHHHHHHhhCCCCHHHHHHHHhcCCcchHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 015509 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAK 384 (405)
Q Consensus 305 i~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~~~~~gdlK~~Lae~i~~~L~pirer~~e~~~~~~~l~~iL~~Ga~k 384 (405)
++++++++|+++|+|+||++++++++++++++|.+.+|++||+.|+++|+++|+|||+||+++++|+ +|++||++|++|
T Consensus 262 ~~~~~~~~p~v~~l~~i~~~~~~~~~eel~~~y~g~~~g~lK~~lae~l~~~l~pirer~~~~~~~~-~l~~il~~Ga~k 340 (388)
T 3prh_A 262 VKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKPIQDRYYELIESE-ELDRILDEGAER 340 (388)
T ss_dssp CCCCTTTCHHHHHHHHHHHHHHTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSH-HHHHHHHHHHHH
T ss_pred ccCCCCCCCCcchHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999779999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q 015509 385 AADIADATLNNVYQAMGFLR 404 (405)
Q Consensus 385 Ar~iA~~tl~~Vr~a~Gl~~ 404 (405)
||++|++||++||++|||.+
T Consensus 341 A~~~A~~tl~~v~~~~g~~~ 360 (388)
T 3prh_A 341 ANRTANKMLKKMENAMGLGR 360 (388)
T ss_dssp HHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999964
No 4
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=4.1e-86 Score=658.67 Aligned_cols=312 Identities=48% Similarity=0.773 Sum_probs=293.9
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHhc--------------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcC
Q 015509 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 144 (405)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylg~i~~~~~lQ--------------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS 144 (405)
++|||||+|||.||||||+|+|++|++|| +|.+.+++.+++++++++++|+|+|+||+|++||+||
T Consensus 2 ~~vysG~~PTG~lHlGn~vg~l~~~~~lQ~g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS 81 (328)
T 1i6k_A 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS 81 (328)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHcCCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecC
Confidence 58999999999999999999999999999 3457899999999999999999999999999999999
Q ss_pred CchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchHHHHHHHHHHHH
Q 015509 145 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 224 (405)
Q Consensus 145 ~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLtRdia~ 224 (405)
+|++|.+++|+++|.+++++|+|+++||++..+ + +++++|+|+||+|||||||+|++|+||||.||+||+||+||||+
T Consensus 82 ~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~-~-~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~ 159 (328)
T 1i6k_A 82 EVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG-K-EAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE 159 (328)
T ss_dssp GCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT-C-SSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHhccccHHHHHHHHHHHHHHhc-c-CCCCchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHH
Confidence 999999999999999999999999999988754 2 67899999999999999999999999999999999999999999
Q ss_pred HHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhcccCCCCCC
Q 015509 225 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304 (405)
Q Consensus 225 r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~Td~~~~ 304 (405)
|||+.|| ++|++|++++++.+++||||++|++|||||+++..|+|+|+|+|++|++|||+|+||+.++
T Consensus 160 r~n~~yg------------~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~a~td~~~~ 227 (328)
T 1i6k_A 160 RFNKRYG------------ELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227 (328)
T ss_dssp HHHHHHC------------SCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHHCCCCSSCC
T ss_pred HhCcccc------------cccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHhcCCCCccc
Confidence 9999998 5799999999865689999976668999999753344999999999999999999999998
Q ss_pred cccCCCCCCccchHHHHHHhhCCCCHHHHHHHHhcCCcchHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 015509 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAK 384 (405)
Q Consensus 305 i~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~~~~~gdlK~~Lae~i~~~L~pirer~~e~~~~~~~l~~iL~~Ga~k 384 (405)
+.|++.++|+++|+|.||++++++++++|+++|.++++++||+.||+.|+++|+|||+||+++++|++ |++||++|++|
T Consensus 228 ~~~~~~~~p~v~~~~~~~~~~~~~~~~el~~~~~g~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~-~~~il~~g~~~ 306 (328)
T 1i6k_A 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEE-LDRVLDEGAEK 306 (328)
T ss_dssp CCCBTTTBHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTH-HHHHHHHHHHH
T ss_pred cccCCCCCcchhhHHHHHHHCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhCChh-HHHHHHHHHHH
Confidence 99999889999999999999999999999999998999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCC
Q 015509 385 AADIADATLNNVYQAMGFLRR 405 (405)
Q Consensus 385 Ar~iA~~tl~~Vr~a~Gl~~~ 405 (405)
||++|++||++||++|||.+|
T Consensus 307 a~~~a~~~~~~v~~~~g~~~~ 327 (328)
T 1i6k_A 307 ANRVASEMVRKMEQAMGLGRR 327 (328)
T ss_dssp HHHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999754
No 5
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=5e-86 Score=662.68 Aligned_cols=312 Identities=37% Similarity=0.555 Sum_probs=291.8
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHhc--------------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 015509 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 143 (405)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ--------------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~q 143 (405)
+++|||||+|||.||||||+|+|++|++|| +|...|++.+++++++++++|+|+||||+|++||+|
T Consensus 4 ~~~i~sG~~PTG~lHLGn~vg~l~~~~~lQ~~~~~~~~IaD~ha~~~~~d~~~i~~~~~~~~~~~lA~Gldp~k~~if~q 83 (348)
T 2yy5_A 4 MKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDPQKACLFLQ 83 (348)
T ss_dssp CCEEEEEECCCTTCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred CeEEEEeeCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEcChhhccCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEEC
Confidence 579999999999999999999999999999 455689999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhC-----CCCCcchhhhhhHHHhhhhhccccceeccccchHHHHHH
Q 015509 144 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 218 (405)
Q Consensus 144 S~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-----~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleL 218 (405)
|++++|.+++|+|+|.+++++|+|+++||++.++.+ .+++++|+|+||+|||||||+|++|+||||.||+||+||
T Consensus 84 S~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel 163 (348)
T 2yy5_A 84 SDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLEL 163 (348)
T ss_dssp GGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHH
T ss_pred CcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHH
Confidence 999999999999999999999999999998765432 367899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhccc
Q 015509 219 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 298 (405)
Q Consensus 219 tRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~ 298 (405)
|||||++||+.|| ++|++|++++++.+++||||++|++|||||+++++|+|+|+|+|++|++|||+|+
T Consensus 164 ~Rdia~r~n~~yg------------~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI~~a~ 231 (348)
T 2yy5_A 164 TRDLAQRIQKKFK------------LKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQAT 231 (348)
T ss_dssp HHHHHHHHHHHHC------------CCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhhcc------------cccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHHHhCC
Confidence 9999999999998 5799999999865579999977678999999865559999999999999999999
Q ss_pred CCCCCCcccCCCCCCccchHHHHHHhhCCCCHH---------HHHHHHhcCCcchHHHHHHHHHHHHhhHHHHHHHHHhc
Q 015509 299 TDSSAGLEFDNLERPECNNLLSIYQLISGKTKG---------EVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMS 369 (405)
Q Consensus 299 Td~~~~i~~~~~~rpev~nll~i~~~~t~~~~e---------el~~~y~~~~~gdlK~~Lae~i~~~L~pirer~~e~~~ 369 (405)
||+.+++++++.++|+++|+|.||++|++++++ +|+++|.++++++||+.|+++|+++|+|||+||+++ +
T Consensus 232 td~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~g~~~~~~K~~La~~i~~~l~pire~~~~~-~ 310 (348)
T 2yy5_A 232 TDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALTEATVNLLVNIQRKREQI-S 310 (348)
T ss_dssp CCSSCCCSCCTTTCHHHHHHHHHHHHHTTSGGGHHHHHHHCSCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSS-C
T ss_pred CCCccccccCCCCCCchhhHHHHHHhCChHhhhhhcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 999988999988899999999999999999999 999999989999999999999999999999999999 8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 015509 370 DSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403 (405)
Q Consensus 370 ~~~~l~~iL~~Ga~kAr~iA~~tl~~Vr~a~Gl~ 403 (405)
|++ |++||++|++|||++|++||++||++|||.
T Consensus 311 d~~-~~~~l~~G~~~a~~~a~~t~~~v~~~~g~~ 343 (348)
T 2yy5_A 311 REQ-VFNCLQAGKNQAQATARTTLALFYDGFGLG 343 (348)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 988 999999999999999999999999999995
No 6
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=2.3e-84 Score=644.55 Aligned_cols=303 Identities=34% Similarity=0.598 Sum_probs=283.0
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHhc--------------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 015509 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 143 (405)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ--------------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~q 143 (405)
..+|||||+|||.||||||+|+|++|++|| +|...+++.+++++++++++|+|+||||+|++||+|
T Consensus 3 ~~~vysG~~PTg~lHlG~~lg~l~~~~~lQ~g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~q 82 (322)
T 3tzl_A 3 AMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQ 82 (322)
T ss_dssp -CCBEEEECCSSCCBHHHHHHTHHHHHHTTTTSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred ceEEEEccCCCccccHHHHHHHHHHHHHHhcCCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 358999999999999999999999999999 455568899999999999999999999999999999
Q ss_pred CCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchHHHHHHHHHHH
Q 015509 144 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 223 (405)
Q Consensus 144 S~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLtRdia 223 (405)
|+|++|.+++|.++|.+++++|+|+++||++.... +++++|+|+||+|||||||+|++|+||||.||+||++||||+|
T Consensus 83 S~~~~~~el~~~l~~~~~~~~l~r~~~~K~~~~~~--~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia 160 (322)
T 3tzl_A 83 SDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKG--LSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIA 160 (322)
T ss_dssp GGCTHHHHHHHHHGGGCBHHHHHSCHHHHHHHHTT--CCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHhccCcHHHHHhhhHHHHHHccC--CCCchHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHH
Confidence 99999999999999999999999999999876543 5789999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhcccCCCCC
Q 015509 224 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 303 (405)
Q Consensus 224 ~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~Td~~~ 303 (405)
+|||++|| ++|++|++++....++|||| +| +|||||++ |+|+|+|+|++|++|||+|+||+.+
T Consensus 161 ~r~n~~~g------------~~f~~P~~~~~~~~~~l~~l-~G-~KMSKS~~---n~I~L~d~p~~i~~KI~~a~td~~~ 223 (322)
T 3tzl_A 161 LKVNNEWG------------EIFTLPEARVNEEVAVVVGT-DG-AKMSKSYQ---NTIDIFSSEKTLKKQISSIVTDSTA 223 (322)
T ss_dssp HHHHHHHC------------SCSCCCEEECCCSSCCCBCT-TS-SBCCGGGT---CCCBSSCCHHHHHHHHHTCCCCCCC
T ss_pred HHhccccc------------CCCCCchhhhccccccccCC-CC-CcCCCCCC---CceecCCCHHHHHHHHHhccCCCcc
Confidence 99999998 57999999996555899999 67 79999986 5899999999999999999999987
Q ss_pred CcccCCCCCCccchHHHHHHhhC-CCCHHHHHHHHh--cCCcchHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHH
Q 015509 304 GLEFDNLERPECNNLLSIYQLIS-GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLAD 380 (405)
Q Consensus 304 ~i~~~~~~rpev~nll~i~~~~t-~~~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~pirer~~e~~~~~~~l~~iL~~ 380 (405)
.. .+++|+++++++|+++|+ ++++++++++|. ++++++||+.|++.|+++|+|||+||+++++|+++|++||++
T Consensus 224 ~~---~~~~~~~~~v~~~~~~~~~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~~~~l~~il~~ 300 (322)
T 3tzl_A 224 LE---DPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPSHLKEILDF 300 (322)
T ss_dssp TT---SCCCGGGCHHHHHHGGGCCHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred cc---CCCCCcchhHHHHHHHhCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcCHHHHHHHHHH
Confidence 52 356799999999999995 568999999997 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q 015509 381 GAAKAADIADATLNNVYQAMGF 402 (405)
Q Consensus 381 Ga~kAr~iA~~tl~~Vr~a~Gl 402 (405)
|++|||++|++||++||++|||
T Consensus 301 G~~~a~~~a~~t~~~v~~~~g~ 322 (322)
T 3tzl_A 301 GATKARKIAQEKMQKIYEKIGL 322 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999997
No 7
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=2.3e-82 Score=633.73 Aligned_cols=306 Identities=44% Similarity=0.704 Sum_probs=276.7
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHhc----------------cCCC--cChHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015509 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ----------------ITLP--YDTQQLSKATRETAAIYLACGIDNSKASV 140 (405)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylg~i~~~~~lQ----------------it~~--~d~~~l~~~~~~~~~~~lA~GiDp~k~~i 140 (405)
++|||||+|||.||||||+|+|++|++|| +|.. .+++.+++++++++++|+|+|+||+|++|
T Consensus 2 ~~vy~G~~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp CCEEEEECSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 58999999999999999999999999888 2334 67899999999999999999999999999
Q ss_pred EEcCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchHHHHHHHH
Q 015509 141 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 220 (405)
Q Consensus 141 f~qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLtR 220 (405)
|+||+|++|.+++|.++|.+++++|+|+.+||++.+. .+++++|+|+||+|||||||+|++|+||||.||++|++++|
T Consensus 82 ~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~r~~~--~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~r 159 (337)
T 2el7_A 82 FVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--QETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTR 159 (337)
T ss_dssp EEGGGSTHHHHHHHHHHHTSBHHHHHTSHHHHHHTTS--SSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHH
T ss_pred EEcCcchhhHHHHHHHHccCCHHHHHHhHHHHHHhcc--CCCCChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHH
Confidence 9999999999999999999999999999999987643 36789999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhcccCC
Q 015509 221 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 300 (405)
Q Consensus 221 dia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA~Td 300 (405)
|||+|||+.|| .+|++|+++++.++++|||| +|++|||||++ |+|+|+|+|++|++||++|+||
T Consensus 160 dla~r~n~~~g------------~~f~~P~~~~~~~~p~l~gl-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki~~a~td 223 (337)
T 2el7_A 160 EIARRFNHLFG------------ETFPEPQALLNPEAPRVPGI-DGKAKMSKSLG---NTIGLLEPEESIWQKIQHLPDD 223 (337)
T ss_dssp HHHHHHHHHHS------------SCCCCCEEECCTTSCCCBCT-TSSSBCCTTTT---CCCBSSSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHhhcC------------cccCCCeeecccccccccCC-CCccccCCCCC---CeeeCcCCHHHHHHHHHhCCCC
Confidence 99999999998 56899999998755799999 56779999986 4899999999999999999999
Q ss_pred CCCCcccCCCCCCccchHHHHHHhhCCC-CHHHHHHHHh--cCCcchHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHH
Q 015509 301 SSAGLEFDNLERPECNNLLSIYQLISGK-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 377 (405)
Q Consensus 301 ~~~~i~~~~~~rpev~nll~i~~~~t~~-~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~pirer~~e~~~~~~~l~~i 377 (405)
+.+++++++.+ |++||+++||++|++. ++++|+++|. +++++++|+.||+.|+++|+|+|++|+++++|+++|++|
T Consensus 224 ~~~~~~~~~~~-p~~~~v~~~~~~~t~~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~~~~l~~i 302 (337)
T 2el7_A 224 PQRIRLSDPGD-PERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKDPDYVMDA 302 (337)
T ss_dssp C--------------CHHHHHHHHHSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CccccccCCCC-CchhhHHHHHHHcCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcCHHHHHHH
Confidence 99988887655 9999999999999987 9999999998 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Q 015509 378 LADGAAKAADIADATLNNVYQAMGFL 403 (405)
Q Consensus 378 L~~Ga~kAr~iA~~tl~~Vr~a~Gl~ 403 (405)
|++|++|||++|++||++||++|||.
T Consensus 303 l~~G~~~a~~~a~~~~~~v~~~~g~~ 328 (337)
T 2el7_A 303 LLEGAKRARAVAQATMEEVREKVGLL 328 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999985
No 8
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=6.2e-82 Score=633.69 Aligned_cols=315 Identities=30% Similarity=0.427 Sum_probs=286.0
Q ss_pred CCCCCCCceEEEeeCCCCcchhhhHHHHHHHHHHhc--------------cCC-CcChHHHHHHHHHHHHHHHHcCCCCC
Q 015509 72 ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITL-PYDTQQLSKATRETAAIYLACGIDNS 136 (405)
Q Consensus 72 ~~~~~~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ--------------it~-~~d~~~l~~~~~~~~~~~lA~GiDp~ 136 (405)
.++.+.+++||+||+|||.||||||+|+|++|++|| ++. +.+++.+++++++++++|+|+|+||+
T Consensus 16 ~~~~~~~~~vysG~~PTG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~ 95 (351)
T 1yi8_B 16 PAATPARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQ 95 (351)
T ss_dssp -----CCSEEEEEECCSSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred ccccCCCcEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChh
Confidence 333366899999999999999999999999999999 122 47899999999999999999999999
Q ss_pred ceEEEEcCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhC-CCCCcchhhhhhHHHhhhhhccccceeccccchHHH
Q 015509 137 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 215 (405)
Q Consensus 137 k~~if~qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~h 215 (405)
|++||+||+|++|.++.|.|+|.++++||+|+++||++....+ .+++++|+|+||+|||||||+|++|+||||.||+||
T Consensus 96 k~~i~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~h 175 (351)
T 1yi8_B 96 KTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPM 175 (351)
T ss_dssp TEEEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred hcEEEEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHhcCCCEEEecCCcHHH
Confidence 9999999999999999999999999999999999999876553 367899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhh
Q 015509 216 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 295 (405)
Q Consensus 216 leLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 295 (405)
++++||||+|||+.|| .+|++|+++++. .++|||| ||++|||||++ |+|+|+|+|++|++|||
T Consensus 176 i~l~rdia~r~n~~yg------------~~f~~P~~~~~~-~~~l~~l-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki~ 238 (351)
T 1yi8_B 176 LEQTREIVRRFNALYA------------PVLAEPQAQLSR-VPRLPGL-DGQAKMSKSLG---NAIALGDSADEVARKVM 238 (351)
T ss_dssp HHHHHHHHHHHHHHTC------------SCSCCCEEEECS-SCSCCCT-TSSSCCCTTTT---CCCBTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc------------cccCCCeeeeec-CccccCC-CCccccCCCCC---CeecCCCCHHHHHHHHH
Confidence 9999999999999998 568999998863 2799999 78779999986 48999999999999999
Q ss_pred cccCCCCCCcccCCCCCCccchHHHHHHhhCC--CCHHHHHHHHh--cCCcchHHHHHHHHHHHHhhHHHHHHHHHhcCH
Q 015509 296 RCKTDSSAGLEFDNLERPECNNLLSIYQLISG--KTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDS 371 (405)
Q Consensus 296 kA~Td~~~~i~~~~~~rpev~nll~i~~~~t~--~~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~pirer~~e~~~~~ 371 (405)
+|+||+.+.+.+++ ++|++++++.|+++|+. +++++|+++|. ++++++||+.|++.|+++|+|+|+||+++++|+
T Consensus 239 ~a~td~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~ 317 (351)
T 1yi8_B 239 GMYTDPGHLRASDP-GRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDP 317 (351)
T ss_dssp TCCCCTTCCSTTSC-CCCTTCTTHHHHHHHCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred hcCCCcccccccCC-CCCccchHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhcCH
Confidence 99999988777776 45778889999998873 35689999997 588999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 015509 372 AYLDKVLADGAAKAADIADATLNNVYQAMGFLR 404 (405)
Q Consensus 372 ~~l~~iL~~Ga~kAr~iA~~tl~~Vr~a~Gl~~ 404 (405)
++|++||++|++|||++|++||++||++|||..
T Consensus 318 ~~l~~il~~G~~~a~~~a~~t~~~v~~~~g~~~ 350 (351)
T 1yi8_B 318 DAVLRFVTEGTARGREVAAQTLGQVRRAMRLFG 350 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 999999999999999999999999999999964
No 9
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=3.3e-82 Score=633.26 Aligned_cols=306 Identities=37% Similarity=0.567 Sum_probs=280.8
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHhc---------------cCC-CcChHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015509 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 140 (405)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------------it~-~~d~~~l~~~~~~~~~~~lA~GiDp~k~~i 140 (405)
+.++||+|++|||.||||||+|+|++|++|| +|. .+||+.+++++++++++|+|+|+||+|++|
T Consensus 11 ~~~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~i 90 (340)
T 2g36_A 11 HHMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSVI 90 (340)
T ss_dssp -CCEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred CCCeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeEE
Confidence 3579999999999999999999999999999 122 468989999999999999999999999999
Q ss_pred EEcCCchhhhHHHHHHhccccHHHHhhhhcHHH---HhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchHHHHH
Q 015509 141 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE---KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 217 (405)
Q Consensus 141 f~qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~---~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hle 217 (405)
|+||+|++|.++.|.|+|.++++||+|+.+||+ +.+. .+++++|+|+||+|||||||+|++|+||||.||+||++
T Consensus 91 f~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~--~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~ 168 (340)
T 2g36_A 91 FVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNY--KDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIE 168 (340)
T ss_dssp EEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHTC---------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHH
T ss_pred EECCchHHHHHHHHHHHccCCHHHHHHhHHHHhHHHHhcc--CCCCChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHH
Confidence 999999999999999999999999999999998 5432 25789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhcc
Q 015509 218 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 297 (405)
Q Consensus 218 LtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA 297 (405)
++||||+|||+.|| ++|++|++++.. .++|||| +|+ |||||++ |+|+|+|+|++|++|||+|
T Consensus 169 l~rdia~r~n~~yg------------~~f~~P~~~~~~-~~~l~gl-dG~-KMSKS~~---n~I~L~dsp~~i~~Ki~~a 230 (340)
T 2g36_A 169 LTREIARRFNYLYD------------EVFPEPEAILSR-VPKLPGT-DGR-KMSKSYG---NIINLEISEKELEQTILRM 230 (340)
T ss_dssp HHHHHHHHHHHHSC------------CCCCCCEEEECC-SCCCCCT-TSS-CCCGGGT---CCCBTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhhcc------------cccCCchhhhcc-ccccCCC-Ccc-ccCCCCC---CeEeeeCCHHHHHHHHHhC
Confidence 99999999999998 569999988753 3799999 685 9999985 5899999999999999999
Q ss_pred cCCCCCCcccCCCCCCccchHHHHHHhhCC-C-CHHHHHHHHh--cCCcchHHHHHHHHHHHHhhHHHHHHHHHhcCHHH
Q 015509 298 KTDSSAGLEFDNLERPECNNLLSIYQLISG-K-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAY 373 (405)
Q Consensus 298 ~Td~~~~i~~~~~~rpev~nll~i~~~~t~-~-~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~pirer~~e~~~~~~~ 373 (405)
+||+.+.+.+++ ++|++||+++||++|++ . ++++|+++|. .+++++||+.||+.|+++|+|||+||+++++|+++
T Consensus 231 ~td~~~~~~~~~-~~p~~~~v~~~~~~f~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~ 309 (340)
T 2g36_A 231 MTDPARVRRSDP-GNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKIDEDPHY 309 (340)
T ss_dssp CCCTTCSSTTSC-CCGGGCHHHHHHHHTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTH
T ss_pred CCCcccccccCC-CCCchhHHHHHHHHHCCCHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 999988888876 88999999999999985 3 5699999998 47889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 015509 374 LDKVLADGAAKAADIADATLNNVYQAMGFL 403 (405)
Q Consensus 374 l~~iL~~Ga~kAr~iA~~tl~~Vr~a~Gl~ 403 (405)
|++||++|++|||++|++||++||++|||.
T Consensus 310 ~~~il~~g~~~a~~~a~~t~~~v~~~~g~~ 339 (340)
T 2g36_A 310 VDDVIMEGTKKAREVAAKTMEEVRRAMNLM 339 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999984
No 10
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=7.8e-68 Score=537.21 Aligned_cols=275 Identities=19% Similarity=0.277 Sum_probs=233.1
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHH-HHHHHhc--------------cC-CC-cChHHHHHHHHHHHHHHHHcCCCCCce
Q 015509 76 SVKKRIVSGVQPTGSIHLGNYLGAI-KNWIALQ--------------IT-LP-YDTQQLSKATRETAAIYLACGIDNSKA 138 (405)
Q Consensus 76 ~~~~~i~sGi~PTG~lHLGnylg~i-~~~~~lQ--------------it-~~-~d~~~l~~~~~~~~~~~lA~GiDp~k~ 138 (405)
.++++||||++|||.||||||+|++ .+|++-+ ++ -+ .+++.+++++++++++|+|+||||+|+
T Consensus 71 ~~p~~i~sG~~PTG~lHLGh~v~~~~~~~lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt 150 (392)
T 3jxe_A 71 GRGFFLYTGRGPSGPMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKT 150 (392)
T ss_dssp TCCCEEEEEECCSSCCBHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSE
T ss_pred CCCeEEEeccCCCCchhHHHHHHHHHHHHHHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccce
Confidence 3578999999999999999999996 8895431 11 12 689999999999999999999999999
Q ss_pred EEEEcCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhcc-ccceeccccchHHHHH
Q 015509 139 SVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-QSDFVPVGEDQKQHLE 217 (405)
Q Consensus 139 ~if~qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~-~adlVpvG~DQ~~hle 217 (405)
+||+||+|++|.++.|.|++.+++++++++.+|+ +++++|+|+||+|||||||+| ++|+||||.||+||++
T Consensus 151 ~i~~qS~~~~~~~~~~~l~~~~t~~~~~~~~~~~--------~~~~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~hl~ 222 (392)
T 3jxe_A 151 FIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFT--------EQSKIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWR 222 (392)
T ss_dssp EEEETTTSTHHHHHHHHHHHHSBHHHHHHHHCCC--------TTSBHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHHHH
T ss_pred EEEECchhHHHHHHHHHHHhhCCHHHHhhhhccC--------CCCchHHHHHHHHHHhhHHhhcCCceeecccchHHHHH
Confidence 9999999999999999999999999999987764 578999999999999999999 6999999999999999
Q ss_pred HHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhc-
Q 015509 218 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR- 296 (405)
Q Consensus 218 LtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~k- 296 (405)
||||+|+||| +++|.+++++ +||||+++++|||||+++ |+|+|+|+|++|++|||+
T Consensus 223 l~Rdla~r~n------------------~~~p~~l~~~---~l~gLdG~~~KMSKS~~n--s~I~L~D~p~~I~kKI~k~ 279 (392)
T 3jxe_A 223 LQRDFAESLG------------------YYKTAALHSK---FVPSLTSLSGKMSASKPE--TAIYLTDSPEDVEKKVWKF 279 (392)
T ss_dssp HHHHHTGGGT------------------SCCCEEEEEC---CCCCSSCSSSCCCTTSGG--GCCBTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHcC------------------CCCCeeeecc---cccCCCCCccccccCCCC--CeeeCCCCHHHHHHHHHhh
Confidence 9999999998 5779888764 999995544699999974 799999999999999999
Q ss_pred ccCCCCCCcccCC--CCCCccchHHHHHHhhC---CCCHHHHHHHHh--cCCcchHHHHHHHHHHHHhhHHHHHHHHHhc
Q 015509 297 CKTDSSAGLEFDN--LERPECNNLLSIYQLIS---GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMS 369 (405)
Q Consensus 297 A~Td~~~~i~~~~--~~rpev~nll~i~~~~t---~~~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~pirer~~e~~~ 369 (405)
|+||+..++++++ +++|+++++++||.+|+ ++++++++++|. +++|++||+.|+++|+++|+|||+||++++
T Consensus 280 A~td~~~~~~~~~~~~~~P~~~~~~~~l~~~~~~~~~~~eel~~~~~~G~l~~gdlK~~lae~i~~~l~pirer~~~~~- 358 (392)
T 3jxe_A 280 TLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKAE- 358 (392)
T ss_dssp C--------------------CHHHHHHHHTTCCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred ccCCCCcccccccccCCCCchhHHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999988777654 68999999999999986 457899999997 489999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHH
Q 015509 370 DSAYLDKVLADGAAK 384 (405)
Q Consensus 370 ~~~~l~~iL~~Ga~k 384 (405)
++|++++..|+.+
T Consensus 359 --~~v~~~l~~g~~~ 371 (392)
T 3jxe_A 359 --KLVEKFKYTGKLA 371 (392)
T ss_dssp --TSHHHHHTTSHHH
T ss_pred --HHHHHHHHcCccc
Confidence 6899999999876
No 11
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=5.3e-65 Score=514.32 Aligned_cols=267 Identities=27% Similarity=0.351 Sum_probs=230.9
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHhc---------------cCCC--cChHHHHHHHHHHHHHHHHcCCCCCce
Q 015509 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITLP--YDTQQLSKATRETAAIYLACGIDNSKA 138 (405)
Q Consensus 76 ~~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------------it~~--~d~~~l~~~~~~~~~~~lA~GiDp~k~ 138 (405)
.++++||||++|||.||||||++++ +|+.+| +|.. .+++.+++++++++++|+||||||+|+
T Consensus 68 gk~~~v~sG~~PTG~lHLGhyv~~~-~~~~lq~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt 146 (372)
T 3a04_A 68 GERVAVLTGFMPSGKFHFGHKLTVD-QLIYLQKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDT 146 (372)
T ss_dssp TCCCEEEEEECCCSCCBHHHHHHHH-HHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTC
T ss_pred CCCCEEEeCcCCCcHhHHHHHHHHH-HHHHHHhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHc
Confidence 3578999999999999999999876 555666 3333 356779999999999999999999999
Q ss_pred EEEEcCC-chhhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhc--------cccceeccc
Q 015509 139 SVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL--------YQSDFVPVG 209 (405)
Q Consensus 139 ~if~qS~-v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~--------~~adlVpvG 209 (405)
+||+||+ +++|.++.|.+++.+++++++++.+ ..+.|+++||+|||||||+ |++++||||
T Consensus 147 ~if~qS~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~yP~lqAaDil~~~~d~~~gy~a~~VPVG 215 (372)
T 3a04_A 147 EFYFQTNRGTPYFRLIQLFSGKVTAAEMEAIYG-----------ELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVG 215 (372)
T ss_dssp EEEEGGGSCHHHHHHHHHHTTSSCHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHGGGSGGGTCCCCEEEEEE
T ss_pred chhhhccchHHHHHHHHHHHhhhhHHHHhhhhh-----------ccCcccccCCcchhHHHhhhcCccccCccceecccc
Confidence 9999999 5789999999999999999987643 3578999999999999999 556699999
Q ss_pred cchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHH
Q 015509 210 EDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 289 (405)
Q Consensus 210 ~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~ 289 (405)
+||+||+|||||||+|||+.|+ +++|..++.+ ++||| +| +|||||+| +|+|+|+|+|++
T Consensus 216 ~DQ~~hleltRdiA~rfn~~~~--------------~~~P~~~~~~---~~pgl-dG-~KmS~S~~--ns~I~l~D~p~~ 274 (372)
T 3a04_A 216 ADQDPHLRLTRDLADRMAGVVE--------------LERPASTYHK---LQPGL-DG-RKMSSSRP--DSTIFLTDPPEV 274 (372)
T ss_dssp GGGHHHHHHHHHHHHHTTTTSC--------------CCCCEEEEEC---CCBCT-TS-SBCCTTSG--GGSCBTTCCHHH
T ss_pred hhhHHHHHHHHHHHHHhcCccc--------------ccChhhhhhc---ccCCC-CC-CccCCCCC--CcccccCCCHHH
Confidence 9999999999999999998887 7889988875 89999 67 69999997 499999999999
Q ss_pred HHHHhhcccCCCCCCcccC--CCCCCccchHHHHHH--hh-CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHHhhHHHH
Q 015509 290 IANKIKRCKTDSSAGLEFD--NLERPECNNLLSIYQ--LI-SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQV 362 (405)
Q Consensus 290 I~kKI~kA~Td~~~~i~~~--~~~rpev~nll~i~~--~~-t~~~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~pire 362 (405)
|++|||+|+||+..+.+.. .+++|+++++++++. ++ +++++++++++|+ +++||+||+.|++.|+++|+|+|+
T Consensus 275 i~kKI~ka~td~~~~~~~~~~~~G~p~~~~i~~~~l~~~~~d~~e~~ei~~~y~~G~l~~ge~K~~l~e~l~~~l~p~re 354 (372)
T 3a04_A 275 ARNKLFRALTGGRATAEEQRRLGGVPEVCSVYHMDLYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQS 354 (372)
T ss_dssp HHHHHHTCCCSCCSSHHHHHHHCCCGGGCHHHHHHHHTTCCSHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccCCCCCcccccccCCCCchhhHHHHHHHccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877653 368999999988543 33 3558999999997 699999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHH
Q 015509 363 RYEEIMSDSAYLDKVL 378 (405)
Q Consensus 363 r~~e~~~~~~~l~~iL 378 (405)
||++. +++++++|
T Consensus 355 r~e~~---~~~~~kil 367 (372)
T 3a04_A 355 RLEKA---KTIAWKLV 367 (372)
T ss_dssp HHHHH---HHHHHTSC
T ss_pred HHHHh---HHHHHHHh
Confidence 99864 34566554
No 12
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=8e-63 Score=498.39 Aligned_cols=267 Identities=19% Similarity=0.253 Sum_probs=227.4
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHhc---------------cC---CCcChHHHHHHHHHHHHHHHHcCCCCCce
Q 015509 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------IT---LPYDTQQLSKATRETAAIYLACGIDNSKA 138 (405)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------------it---~~~d~~~l~~~~~~~~~~~lA~GiDp~k~ 138 (405)
++++||+||+|||.+||||++..+.+|++|| ++ ...+++.+++++.+++++|+|+||||+|+
T Consensus 55 ~~~~iy~G~~PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k~ 134 (373)
T 3vgj_A 55 RKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMENV 134 (373)
T ss_dssp SSCEEEEEECCCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTTE
T ss_pred CCceEEeCCCCCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhhe
Confidence 4679999999999999999653333678888 11 13578899999999999999999999999
Q ss_pred EEEEcCCch-hhhHHHHHHhc----cccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchH
Q 015509 139 SVFVQSHVR-AHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 213 (405)
Q Consensus 139 ~if~qS~v~-~h~el~w~L~~----~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~ 213 (405)
+||+||+|+ +|.+++|.+.+ .++++||.++.+|+.+.. .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 135 ~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~~---~~~~~~g~f~YPlLQaaDil~l~ad~vpgG~DQ~ 211 (373)
T 3vgj_A 135 QFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSE---GEENYCSQILYPCMQCADIFFLNVDICQLGIDQR 211 (373)
T ss_dssp EEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCCT---TSCCBTHHHHHHHHHHHHHHHTTCSEECCBGGGH
T ss_pred EEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhhc---cCCCChHHHHHHHHHHhcccccCCcEEEcchhhH
Confidence 999999998 89999998765 679999999999875321 2578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHH
Q 015509 214 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 293 (405)
Q Consensus 214 ~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kK 293 (405)
+|++++||+|+|||++|+ |..+.. ++||||+||++|||||+| +|+|+|+|+|++|++|
T Consensus 212 ~~l~l~Rdla~r~~~~~~-----------------~~~l~~---p~l~gL~dG~~KMSKS~~--~~~I~L~D~p~~i~~K 269 (373)
T 3vgj_A 212 KVNMLAREYCDIKKIKKK-----------------PVILSH---GMLPGLLEGQEKMSKSDE--NSAIFMDDSESDVNRK 269 (373)
T ss_dssp HHHHHHHHHHHHHTCSCC-----------------CEEEEB---CCCCCSSTTCCSCCSSST--TCCCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC-----------------ceEEeC---CeeecCCCCCCCCcCCCC--CCeeecCCCHHHHHHH
Confidence 999999999999996543 544444 499999889889999997 4899999999999999
Q ss_pred hhcccCCCCCCcccCCCCCCccchHHHHHHh--------h------------CCCCHHHHHHHHh--cCCcchHHHHHHH
Q 015509 294 IKRCKTDSSAGLEFDNLERPECNNLLSIYQL--------I------------SGKTKGEVAEECQ--NMNWGTFKPLLTD 351 (405)
Q Consensus 294 I~kA~Td~~~~i~~~~~~rpev~nll~i~~~--------~------------t~~~~eel~~~y~--~~~~gdlK~~Lae 351 (405)
||+|+||+. +++.++++.|+++ | +++++++++++|. +++|++||++|++
T Consensus 270 I~kA~td~~---------~~~~n~~~~~~~~~~f~~~~~f~~~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~lae 340 (373)
T 3vgj_A 270 IKKAYCPPN---------VIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIHPLDLKDNVAM 340 (373)
T ss_dssp HHHSCCCTT---------CCTTCHHHHHHHHTHHHHHSSEEECCCGGGTCCEEECCHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHhCcCCCC---------CCCCCcchhhhhhhhhhhhhhhcccccccccCCcCcccHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999864 3455666665443 2 3468999999997 5899999999999
Q ss_pred HHHHHhhHHHHHHHHHhcCHHHHHHH
Q 015509 352 ALIEHLHPIQVRYEEIMSDSAYLDKV 377 (405)
Q Consensus 352 ~i~~~L~pirer~~e~~~~~~~l~~i 377 (405)
+|+++|+|||++|++..+.++++++|
T Consensus 341 ~i~~~l~Pire~~~~~~~~~~~l~~v 366 (373)
T 3vgj_A 341 YINKLLQPVRDHFQNNIEAKNLLNEI 366 (373)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 99999999999999887777777765
No 13
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.2e-63 Score=501.00 Aligned_cols=262 Identities=21% Similarity=0.269 Sum_probs=228.4
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHhc---------------cCC---CcChHHHHHHH-HHHH----HHHHHcCC
Q 015509 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITL---PYDTQQLSKAT-RETA----AIYLACGI 133 (405)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------------it~---~~d~~~l~~~~-~~~~----~~~lA~Gi 133 (405)
.+++||+||+|||.+|||||++++.+|++|| ++. ..+++.+++++ ++++ ++|+|+|+
T Consensus 32 ~~~~vy~G~~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~ 111 (375)
T 2cyc_A 32 APLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGG 111 (375)
T ss_dssp CCCBEEEEECCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred CCcEEEeCCCCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3689999999999999999999999999999 122 24889999999 8888 99999999
Q ss_pred CCCceEEEEcCCchhhhHHHHHH----hccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccc
Q 015509 134 DNSKASVFVQSHVRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVG 209 (405)
Q Consensus 134 Dp~k~~if~qS~v~~h~el~w~L----~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG 209 (405)
||+|++||+||+|++|. ++|.+ ++.++++||.|+.+||++. . .+++++|+|+||+|||||||+|++|+||||
T Consensus 112 dp~k~~i~~qS~~~~~~-~~~~~~~~~~~~~~~~~m~~~~~~k~r~--~-~~~i~~g~f~YP~LQaaDil~~~~~~vp~G 187 (375)
T 2cyc_A 112 DPKKVEFVLASEILEKG-DYWQTVIDISKNVTLSRVMRSITIMGRQ--M-GEAIDFAKLIYPMMQVADIFYQGVTIAHAG 187 (375)
T ss_dssp CGGGSEEEETHHHHTBH-HHHHHHHHHHTTSBHHHHHHTGGGGTCC--C-CTTCBTHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CccceEEEEcchhhhhh-HHHHHHHHHhceeEHHHHhccchhhhhc--c-CCCCChHHHHHHHHHHHHHHHhCCCeeccc
Confidence 99999999999999998 89988 9999999999999999643 2 256899999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhh---hhCCccccccCCCCCccccCCccccCCCCcccccCCCC----------------CCcc
Q 015509 210 EDQKQHLELTRELAERVNY---LYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG----------------LSKM 270 (405)
Q Consensus 210 ~DQ~~hleLtRdia~r~n~---~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg----------------~~KM 270 (405)
.||++|+++|||+|+|||+ +|.+ ..| +|..+.. ++||||++| ++||
T Consensus 188 ~DQ~~~i~l~rdla~r~n~~~~~~~g-----------~~~-~~~~~~~---~~l~gL~g~~~~~~~~~~~~~~~~~~~KM 252 (375)
T 2cyc_A 188 MDQRKAHVIAIEVAQKLRYHPIVHEG-----------EKL-KPVAVHH---HLLLGLQEPPKWPIESEEEFKEIKAQMKM 252 (375)
T ss_dssp GGGHHHHHHHHHHGGGCSSSCEEETT-----------EEE-CCEEEEE---CCCBCSSCCSSSSCCSHHHHHHHHHHHBG
T ss_pred chHHHHHHHHHHHHHHhCCccccccc-----------ccC-ccEEecc---ccccCCCCcccccccchhhhhhhhhhhcc
Confidence 9999999999999999996 2311 112 5665543 599999543 4799
Q ss_pred ccCCCCCCceeecCCCHHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHHhhC---------------------CCC
Q 015509 271 SKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS---------------------GKT 329 (405)
Q Consensus 271 SKS~p~~~s~I~L~Dspe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~t---------------------~~~ 329 (405)
|||+|+ |+|+|+|+|++|++|||+|+||+. +++.++++.|+++|+ +++
T Consensus 253 SKS~~~--~~I~L~d~p~~i~~KI~~A~t~~~---------~~~~~~v~~~~~~~~f~~~~~~~~i~~~~~~gg~~~~~~ 321 (375)
T 2cyc_A 253 SKSKPY--SAVFIHDSPEEIRQKLRKAFCPAR---------EVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTT 321 (375)
T ss_dssp GGSCGG--GSCBTTCCHHHHHHHHHHSCCCTT---------CCSSCHHHHHHHHTTTSSSSCCEEECCCGGGTCCEEESS
T ss_pred cCCCCC--CeeccCCCHHHHHHHHHHhcCCCC---------CCCCChHHHHHHHHhcCCCCcceeeecchhccCcCChhH
Confidence 999974 899999999999999999999863 456788999998875 457
Q ss_pred HHHHHHHHhc--CCcchHHHHHHHHHHHHhhHHHHHHHHHh
Q 015509 330 KGEVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIM 368 (405)
Q Consensus 330 ~eel~~~y~~--~~~gdlK~~Lae~i~~~L~pirer~~e~~ 368 (405)
+++|+++|.+ +++++||+.||+.|+++|+|+|++|++..
T Consensus 322 ~~el~~~~~~g~~~~~~~K~~La~~l~~~l~pir~~~~~~~ 362 (375)
T 2cyc_A 322 FEELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRYFEKHP 362 (375)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 9999999984 89999999999999999999999998653
No 14
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=1.2e-62 Score=493.38 Aligned_cols=254 Identities=19% Similarity=0.242 Sum_probs=210.8
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHhc---------------cCCC---cChHHHHHHHHHHHHHHHHcCCCCCce
Q 015509 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITLP---YDTQQLSKATRETAAIYLACGIDNSKA 138 (405)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------------it~~---~d~~~l~~~~~~~~~~~lA~GiDp~k~ 138 (405)
.++++|||++|||.||||||++.+.+|++|| ++.. .+++.++++++++++.|+|+|+||+|+
T Consensus 39 ~~~~vy~G~~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~ 118 (348)
T 2j5b_A 39 RIFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGT 118 (348)
T ss_dssp CCEEEEEEECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCCEEEeccCCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccce
Confidence 4789999999999999999999999999999 1222 378999999999999999999999999
Q ss_pred EEEEcCCc-hhhhHHHHHHhc----cccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhcc---ccceecccc
Q 015509 139 SVFVQSHV-RAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---QSDFVPVGE 210 (405)
Q Consensus 139 ~if~qS~v-~~h~el~w~L~~----~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~---~adlVpvG~ 210 (405)
.||+||+| ++|. ++|.+.+ .+++++|.++.+++.+. . .+++++|+|+||+|||||||+| ++|+||||.
T Consensus 119 ~i~~qs~~~~~~~-~~~~~~~~v~~~~~~~~m~~~~~~~~r~--~-~~~i~~g~f~YP~lQaaDil~~~~~~~~~~~~G~ 194 (348)
T 2j5b_A 119 RFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRN--E-SDCLKASQIFYPCMQAADVFELVPEGIDICQLGI 194 (348)
T ss_dssp EEEEHHHHHHHCH-HHHHHHHHHHHHHHHHHHTC--------------------CCHHHHHHHHHHHSSTTCCSEECCBG
T ss_pred EEEECCHhhhhhh-HHHHHHHHHHhheeHHHHHhhhhhhhhh--c-cCCcChHHHhhHHHHHHHHHHHhcCCCcEEEecc
Confidence 99999997 6777 8999876 88888888888887542 1 2568999999999999999999 999999999
Q ss_pred chHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHH
Q 015509 211 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 290 (405)
Q Consensus 211 DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I 290 (405)
||++|++|+||+|++||+. .|..+.. ++||||+||++|||||+|+ |+|+|+|+|++|
T Consensus 195 DQ~~~i~l~Rdia~r~~~~------------------~p~~~~~---~~l~gL~dg~~KMSKS~~~--~~I~L~d~p~~i 251 (348)
T 2j5b_A 195 DQRKVNMLAIEYANDRGLK------------------IPISLSH---HMLMSLSGPKKKMSKSDPQ--GAIFMDDTEQEV 251 (348)
T ss_dssp GGHHHHHHHHHHHHHTTCC------------------CCEEEEB---CCCCCTTCSSCCCSTTCGG--GSCBTTCCHHHH
T ss_pred ChHHHHHHHHHHHHHhCCC------------------CceeecC---ccccCCCCcccccccCCCC--CeEeecCCHHHH
Confidence 9999999999999999843 3554443 5999998888899999864 899999999999
Q ss_pred HHHhhcccCCCCCCcccCCCCCCccchHHHHHHhh-------------CCCCHHHHHHHHhcCCcchHHHHHHHHHHHHh
Q 015509 291 ANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI-------------SGKTKGEVAEECQNMNWGTFKPLLTDALIEHL 357 (405)
Q Consensus 291 ~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~-------------t~~~~eel~~~y~~~~~gdlK~~Lae~i~~~L 357 (405)
++|||+|+||+. .++ ++++.|+.++ +++++++|+++|.++++++||+.|+++|+++|
T Consensus 252 ~kKI~ka~td~~---------~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~el~~~~~~~~~~~~K~~la~~l~~~l 321 (348)
T 2j5b_A 252 SEKISRAYCTDE---------TFD-NPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDFSSMNKRELKTDVANYINTII 321 (348)
T ss_dssp HHHHHHSCCCSS---------STT-CHHHHHHHHTHHHHHSCEEETTEEESSHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCCC---------CCC-CchHhHHHHhhhhhhcccccccCCcchHHHHHHHHcccCHHHHHHHHHHHHHHHH
Confidence 999999999874 356 6788877663 46799999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 015509 358 HPIQVRYEEI 367 (405)
Q Consensus 358 ~pirer~~e~ 367 (405)
+|||++|++.
T Consensus 322 ~pir~~~~~~ 331 (348)
T 2j5b_A 322 DLVREHFKKP 331 (348)
T ss_dssp HHHHHHTTSG
T ss_pred HHHHHHHHhh
Confidence 9999999765
No 15
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=2.7e-64 Score=517.38 Aligned_cols=289 Identities=16% Similarity=0.234 Sum_probs=238.2
Q ss_pred CCceEEEeeCCC-CcchhhhHHHHH-HHHHHhc--------cC-------C-CcChHHHHHHHHHHHHHHHHcCCCCCce
Q 015509 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQ--------IT-------L-PYDTQQLSKATRETAAIYLACGIDNSKA 138 (405)
Q Consensus 77 ~~~~i~sGi~PT-G~lHLGnylg~i-~~~~~lQ--------it-------~-~~d~~~l~~~~~~~~~~~lA~GiDp~k~ 138 (405)
++++||+||+|| |.||||||++++ .+|++-+ |. - ..+++.+++++++++++|+|+|+||+|+
T Consensus 101 ~~~~vy~G~dPTag~LHLGh~v~~~~l~~lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~k~ 180 (432)
T 2ip1_A 101 KPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNT 180 (432)
T ss_dssp CCCEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGE
T ss_pred CCeEEEEeecCCCCCccHHHHHHHHHHHHHHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCCce
Confidence 478999999999 899999999987 7885531 11 0 2467889999999999999999999999
Q ss_pred EEEEcCCch--hhhHHHHHHhccccHHHHhhhhcHHHHhHhhC-CCCCcchhhhhhHHHhhhhhc-----------cccc
Q 015509 139 SVFVQSHVR--AHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------YQSD 204 (405)
Q Consensus 139 ~if~qS~v~--~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~-----------~~ad 204 (405)
+||+||+|+ .+.++.|. ++||++++++.++.+ .+++++|+|+||+|||||||+ |+++
T Consensus 181 ~i~~nSd~~~~~~~~~~~~---------v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~~~ 251 (432)
T 2ip1_A 181 FIFSDLQYMGGAFYETVVR---------VSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPC 251 (432)
T ss_dssp EEEEHHHHCSHHHHHHHHH---------HHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTCCE
T ss_pred EEEeCchhhhhhHHHHHHH---------HHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCCce
Confidence 999999997 67777773 569999998877654 467899999999999999999 6799
Q ss_pred eeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecC
Q 015509 205 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 284 (405)
Q Consensus 205 lVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~ 284 (405)
+||||.||++|++|+||+|+||| |++|..++. ++||||+++++|||||+++ ++|+|+
T Consensus 252 lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~ll~gLdG~~~KMSKS~~n--saI~L~ 308 (432)
T 2ip1_A 252 LIPCAIDQDPYFRVCRDVADKLK------------------YSKPALLHS---RFFPALQGSTTKMSASDDT--TAIFMT 308 (432)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHT------------------SCCCEEEEE---CCCCCTTC--------CGG--GCCBTT
T ss_pred EEEeccCcHHHHHHHHHHHHHhC------------------CCCceeecc---ccccCCCCCccccCCCCCC--CeEecc
Confidence 99999999999999999999998 577887654 4999995444799999863 699999
Q ss_pred CCHHHHHHHhhc-ccCCCCCCcccCC--CCCCccchHHHHHHhhC--CCCHHHHHHHHhc--CCcchHHHHHHHHHHHHh
Q 015509 285 DPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGTFKPLLTDALIEHL 357 (405)
Q Consensus 285 Dspe~I~kKI~k-A~Td~~~~i~~~~--~~rpev~nll~i~~~~t--~~~~eel~~~y~~--~~~gdlK~~Lae~i~~~L 357 (405)
|+|++|++|||+ |+||+..+.++++ +++|++++++.||++|+ ++++++|+++|.+ ++++++|+.||+.|+++|
T Consensus 309 d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f~~~~~eieel~~~~~~G~~~~~~~K~~La~~i~~~l 388 (432)
T 2ip1_A 309 DTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETLQEFV 388 (432)
T ss_dssp CCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHHHHHCCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999 9999976655433 38899999999999884 5588899999973 899999999999999999
Q ss_pred hHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015509 358 HPIQVRYEEIMSD----SAYLDKVLADGAAKAADIADATLNNVY 397 (405)
Q Consensus 358 ~pirer~~e~~~~----~~~l~~iL~~Ga~kAr~iA~~tl~~Vr 397 (405)
+|+|+||++++++ +.++++++.+|++|||++|.+||++|+
T Consensus 389 ~~~rer~~~~~~~~~~~~~~~~~~~~~g~~~a~~~a~~t~~~v~ 432 (432)
T 2ip1_A 389 KAFQERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTKQEKK 432 (432)
T ss_dssp HHHHHHHHTCCHHHHHHHHSCCCCCCSCSCCSSCCC--------
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999988 788899999999999999999999986
No 16
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.3e-62 Score=500.72 Aligned_cols=263 Identities=17% Similarity=0.198 Sum_probs=228.4
Q ss_pred CCCceEEEeeCCCC-cchhhhHHHH-HHHHHHhc------c---------CCCcChHHHHHHHHHHHHHHHHcCCCCCce
Q 015509 76 SVKKRIVSGVQPTG-SIHLGNYLGA-IKNWIALQ------I---------TLPYDTQQLSKATRETAAIYLACGIDNSKA 138 (405)
Q Consensus 76 ~~~~~i~sGi~PTG-~lHLGnylg~-i~~~~~lQ------i---------t~~~d~~~l~~~~~~~~~~~lA~GiDp~k~ 138 (405)
.++++||||++||| .||||||+++ +.+|++-. | +.+.+++.+++++++++++|+|+||||+|+
T Consensus 99 ~~p~~vy~G~~PTg~~lHLGh~v~~~~~~~lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~ 178 (406)
T 3tze_A 99 NRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLT 178 (406)
T ss_dssp TCCEEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGE
T ss_pred CCCeEEEEeeCCCCCcccHHHHHHHHHHHHHHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 35789999999998 7999999998 48893321 1 124688999999999999999999999999
Q ss_pred EEEEcCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhC-CCCCcchhhhhhHHHhhhhh--------ccccceeccc
Q 015509 139 SVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQSDFVPVG 209 (405)
Q Consensus 139 ~if~qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl--------~~~adlVpvG 209 (405)
+||.||+|++ .+...+++|.|++||+++.+..+ .+++++|+|+||+|||||++ .+++|+||||
T Consensus 179 ~i~~qs~~~~--------~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a~lvpvG 250 (406)
T 3tze_A 179 YIFSNVEASH--------HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVPAA 250 (406)
T ss_dssp EEEEHHHHGG--------GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCEEEEEEE
T ss_pred EEEeccHhHH--------HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCCeEEeec
Confidence 9999999986 34457889999999999988765 46789999999999999955 4679999999
Q ss_pred cchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCC-CccccCCCCCCceeecCCCHH
Q 015509 210 EDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQSRINLLDPKD 288 (405)
Q Consensus 210 ~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~-~KMSKS~p~~~s~I~L~Dspe 288 (405)
.||++|++||||+|+||| +++|..+.. ++|||| +|. +|||||+| +|+|+|+|+|+
T Consensus 251 ~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gL-dG~~~KMSKS~~--~~~I~L~D~p~ 306 (406)
T 3tze_A 251 VDQDPFFRLARDKAKALG------------------EKKPSSIYV---SLLPDL-KGVNRKMSASDP--NSSIYLDDAQD 306 (406)
T ss_dssp GGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TSCCCCSSCSCG--GGSCBTTCCHH
T ss_pred cchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCC-CCCCcCCCCCCC--CCcccCCCCHH
Confidence 999999999999999998 578888764 499999 664 69999986 48999999999
Q ss_pred HHHHHhhc-ccCCCCCCcccC--CCCCCccchHHHHHHhhC--CCCHHHHHHHHh--cCCcchHHHHHHHHHHHHhhHHH
Q 015509 289 VIANKIKR-CKTDSSAGLEFD--NLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQ 361 (405)
Q Consensus 289 ~I~kKI~k-A~Td~~~~i~~~--~~~rpev~nll~i~~~~t--~~~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~pir 361 (405)
+|++|||+ |+||+..+++++ .+++|+++|+++||++|+ ++++++|+++|. +++|++||+.|+++|+++|+|||
T Consensus 307 ~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~~l~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~Lae~i~~~l~pir 386 (406)
T 3tze_A 307 TIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVSRYQ 386 (406)
T ss_dssp HHHHHHHHHCCCCCCCC-------CCCGGGCHHHHHHHHHCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCcccccccccCCCCCcccHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999887763 578999999999999997 568999999996 58999999999999999999999
Q ss_pred HHHHHHhcC
Q 015509 362 VRYEEIMSD 370 (405)
Q Consensus 362 er~~e~~~~ 370 (405)
+||+++++|
T Consensus 387 er~~~~~~d 395 (406)
T 3tze_A 387 ESRKRVTDD 395 (406)
T ss_dssp HHHHHCCHH
T ss_pred HHHHHHHhh
Confidence 999998754
No 17
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=1e-62 Score=498.75 Aligned_cols=268 Identities=15% Similarity=0.199 Sum_probs=231.0
Q ss_pred CCCceEEEeeCCCCcchhhhHHHH-HHHHHHhc--------cCC-------CcChHHHHHHHHHHHHHHHHcCCCCCceE
Q 015509 76 SVKKRIVSGVQPTGSIHLGNYLGA-IKNWIALQ--------ITL-------PYDTQQLSKATRETAAIYLACGIDNSKAS 139 (405)
Q Consensus 76 ~~~~~i~sGi~PTG~lHLGnylg~-i~~~~~lQ--------it~-------~~d~~~l~~~~~~~~~~~lA~GiDp~k~~ 139 (405)
.++++||+|++|||.||||||+|+ +.+|++-. |+. +.+++.+++++++++++|+|+||||+|++
T Consensus 80 ~~~~~vysG~~PTG~lHLGh~v~~~~~~~lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt~ 159 (386)
T 3hzr_A 80 KKPTFIFIQKYPQKEVALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTF 159 (386)
T ss_dssp TCCEEEEEEECCCSSCBGGGHHHHHHHHHHHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGEE
T ss_pred CCCeEEEeccCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcceE
Confidence 357899999999999999999999 58994321 221 26899999999999999999999999999
Q ss_pred EEEcCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhC-CCCCcchhhhhhHHHhhhhh--------ccc-cceeccc
Q 015509 140 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQ-SDFVPVG 209 (405)
Q Consensus 140 if~qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl--------~~~-adlVpvG 209 (405)
||+||+|++ .|..++++|.|+++|+++.+..+ .+++++|+|+||+||||||| .++ +|+||||
T Consensus 160 i~~qS~~~~--------~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~~a~~VpvG 231 (386)
T 3hzr_A 160 IYTDYQYFG--------KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPARCLVLDS 231 (386)
T ss_dssp EEEHHHHHH--------HHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSCCEEEEEEE
T ss_pred EEeccHHHH--------HHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCCCccccccc
Confidence 999999986 55677899999999999987765 46789999999999999776 456 9999999
Q ss_pred cchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHH
Q 015509 210 EDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 289 (405)
Q Consensus 210 ~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~ 289 (405)
.||+||++||||+|+||| +++|..+.. ++|||| +|.+|||||++ +|+|+|+|+|++
T Consensus 232 ~DQ~~hl~l~Rdla~r~n------------------~~~p~~l~~---~~l~gL-dG~~KMSKSd~--~~~I~L~D~p~~ 287 (386)
T 3hzr_A 232 IKNVQFHSIIDQIATTLN------------------FIQPTVLFH---KMVPLL-SGVTKFDIPSD--HNSILLSDNAKQ 287 (386)
T ss_dssp GGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TCTTCCCCCCT--TTSCBTTCCHHH
T ss_pred cchHHHHHHHHHHHHHcC------------------CCCceEeec---CeeeCC-CCCCccCcCCC--CCeeecCCCHHH
Confidence 999999999999999998 467865533 599999 56569999986 499999999999
Q ss_pred HHHHhhc-ccCCCCCCccc--CCCCCCccchHHHHHHhhC--CCCHHHHHHHHh--cCCcchHHHHHHHHHHHHhhHHHH
Q 015509 290 IANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQV 362 (405)
Q Consensus 290 I~kKI~k-A~Td~~~~i~~--~~~~rpev~nll~i~~~~t--~~~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~pire 362 (405)
|++|||+ |+||++.+.+. ..+++|+++++++||.+++ ++++++|+++|+ +++|++||+.|+++|+++|+|||+
T Consensus 288 i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~~~~~~~~~eei~~~~~~G~l~~g~~K~~lae~i~~~l~pire 367 (386)
T 3hzr_A 288 VERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVAYDA 367 (386)
T ss_dssp HHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHHHCSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHHHcCChhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 99999876433 2468899999999999995 458899999997 589999999999999999999999
Q ss_pred HHHHHhcCHHHHHHH
Q 015509 363 RYEEIMSDSAYLDKV 377 (405)
Q Consensus 363 r~~e~~~~~~~l~~i 377 (405)
||+++++| .|++.
T Consensus 368 r~~~~~~~--~~~~~ 380 (386)
T 3hzr_A 368 KKKPITTA--YLKAY 380 (386)
T ss_dssp HHTTCCHH--HHHHH
T ss_pred HHHHHHHH--HHHHH
Confidence 99998753 45443
No 18
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=2.1e-62 Score=494.22 Aligned_cols=255 Identities=21% Similarity=0.287 Sum_probs=220.4
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHhc---------------cCCC---cChHHHHHHHHHHHHHHHHcCCCCCce
Q 015509 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITLP---YDTQQLSKATRETAAIYLACGIDNSKA 138 (405)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------------it~~---~d~~~l~~~~~~~~~~~lA~GiDp~k~ 138 (405)
.++++|+||+|||.+|||| ++++.+|++|| ++.. .+++.+++++++++++|+|+|+||+|+
T Consensus 34 ~~~~iy~G~~PTg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~ 112 (364)
T 2cya_A 34 ARIKGYIGYEPSGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERV 112 (364)
T ss_dssp SCCEEEEEECCCSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred CCCEEEeccCCCCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccce
Confidence 4689999999999999999 78889999999 2222 688999999999999999999999999
Q ss_pred EEEEcCCchhhhHHHHH----HhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchHH
Q 015509 139 SVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 214 (405)
Q Consensus 139 ~if~qS~v~~h~el~w~----L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~ 214 (405)
+||+||+|++| +++|. ++|.++++||+|+.+|+++.. +++++++|+|+||+|||||||+|++|+||||.||++
T Consensus 113 ~i~~qS~~~~~-~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~--~~~~i~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~ 189 (364)
T 2cya_A 113 RFVDAEELASD-KDYWGLVIRVAKRASLARVRRALTIMGRRA--EEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQRK 189 (364)
T ss_dssp EEEEHHHHHTC-HHHHHHHHHHHHTSCHHHHHTTC------C--CGGGSCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHH
T ss_pred EEEecchhhcc-hHHHHHHHHHHCcCcHHHHHcCchhhhhhc--CCCCccchhhhhHHHHHhhHHhcCCCEEeccchHHH
Confidence 99999999988 67887 999999999999999997653 224588999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCC---------------CCCccccCCCCCCc
Q 015509 215 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD---------------GLSKMSKSAPSDQS 279 (405)
Q Consensus 215 hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~d---------------g~~KMSKS~p~~~s 279 (405)
|++++||+|+||| +++|..++. ++||||++ |++|||||+++ |
T Consensus 190 ~~~l~rdla~r~~------------------~~~p~~l~~---~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~--~ 246 (364)
T 2cya_A 190 AHMLARDVAEKLG------------------RKKPVAIHT---PIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPE--T 246 (364)
T ss_dssp HHHHHHHHHTTTT------------------CCCCEEEEE---CCCBCSSCC----------------CBCCSSSGG--G
T ss_pred HHHHHHHHHHHcC------------------CCCceeecc---ceeeCCCcccccccccccccccccccccCCCCCC--C
Confidence 9999999999998 356777665 49999954 35899999864 8
Q ss_pred eeecCCCHHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHHhhCC---------------------CCHHHHHHHHh
Q 015509 280 RINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG---------------------KTKGEVAEECQ 338 (405)
Q Consensus 280 ~I~L~Dspe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~t~---------------------~~~eel~~~y~ 338 (405)
+|+|+|+|++|++|||+|+||+.. ++.++++.|+++|++ +++++|+++|.
T Consensus 247 ~I~L~d~p~~i~~Ki~~a~td~~~---------~~~~~v~~~~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~~el~~~~~ 317 (364)
T 2cya_A 247 AVFVVDSDDDIRRKIRKAYCPAKQ---------VQGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYT 317 (364)
T ss_dssp SCBTTCCHHHHHHHHHTSCCCTTC---------CTTCHHHHHHHHTTTTSTTCCEECC--------CEESSHHHHHHHHH
T ss_pred EeeccCCHHHHHHHHHhCcCCCCC---------CCCCcHHHHHHHHhcccccCceeeeccccccCCCChHHHHHHHHHHh
Confidence 999999999999999999998643 467889999988652 48999999998
Q ss_pred c--CCcchHHHHHHHHHHHHhhHHHHHHHHH
Q 015509 339 N--MNWGTFKPLLTDALIEHLHPIQVRYEEI 367 (405)
Q Consensus 339 ~--~~~gdlK~~Lae~i~~~L~pirer~~e~ 367 (405)
+ +++++||+.||++|+++|+|+|++|++.
T Consensus 318 ~g~~~~~~lK~~la~~l~~~l~pir~~~~~~ 348 (364)
T 2cya_A 318 DGRLHPLDLKNAVAESLIEVVRPIRGAVLGD 348 (364)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4 8999999999999999999999999853
No 19
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=6.6e-61 Score=516.05 Aligned_cols=277 Identities=20% Similarity=0.304 Sum_probs=234.7
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHhc---------------cC---CCcChHHHHHHHHHHHHHHHHcCCCCCce
Q 015509 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------IT---LPYDTQQLSKATRETAAIYLACGIDNSKA 138 (405)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------------it---~~~d~~~l~~~~~~~~~~~lA~GiDp~k~ 138 (405)
++++|||||+|||.+||||++....+|+++| ++ ...+++.+++++++++++|+|+|+||+|+
T Consensus 39 ~~~~vy~G~~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~ 118 (690)
T 3p0j_A 39 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKV 118 (690)
T ss_dssp TTEEEEEEECCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCceEEeeecCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHHcCCChHHe
Confidence 4789999999999999999764333677787 22 24678899999999999999999999999
Q ss_pred EEEEcCC-chhhhHHHHHHhc----cccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchH
Q 015509 139 SVFVQSH-VRAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 213 (405)
Q Consensus 139 ~if~qS~-v~~h~el~w~L~~----~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~ 213 (405)
+||+||+ +++|++++|.+.+ .++++||.++.+++.+. . +++++|+|+||+|||||||+|++|+||||.||+
T Consensus 119 ~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~--~--~~i~~g~f~YPlLQAaDil~~~ad~vpvG~DQ~ 194 (690)
T 3p0j_A 119 LFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKT--E--GTLTAAQVLYPLMQCCDIFFLKADICQLGLDQR 194 (690)
T ss_dssp EEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-----------CCCCCSCSSHHHHHHHHHHHTTCSEECCBGGGH
T ss_pred EEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhc--c--CCCchhhHhhHHHHHHHHHhhCCCEEeccccHH
Confidence 9999999 6899999998755 79999999999999643 2 248999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHH
Q 015509 214 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 293 (405)
Q Consensus 214 ~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kK 293 (405)
||+++|||+|+|||++|+ |..+.. ++||||+||++|||||+++ |+|+|+|+|++|++|
T Consensus 195 ~~l~l~Rdla~r~n~~~~-----------------p~~l~~---~~l~gL~dG~~KMSKS~~~--~~I~L~D~p~~i~kK 252 (690)
T 3p0j_A 195 KVNMLAREYCDLIGRKLK-----------------PVILSH---HMLAGLKQGQAKMSKSDPD--SAIFMEDTEEDVARK 252 (690)
T ss_dssp HHHHHHHHHHHHTTCCCC-----------------CEEEEB---CCCCCSSTTCSSCBTTBGG--GSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC-----------------ceEeec---CeeecCCCCCcCCCCCCCC--CeeeccCCHHHHHHH
Confidence 999999999999996443 544443 5999998898899999864 899999999999999
Q ss_pred hhcccCCCCCC--cccCCCCC----CccchHHHHHHhh--------------CCCCHHHHHHHHh--cCCcchHHHHHHH
Q 015509 294 IKRCKTDSSAG--LEFDNLER----PECNNLLSIYQLI--------------SGKTKGEVAEECQ--NMNWGTFKPLLTD 351 (405)
Q Consensus 294 I~kA~Td~~~~--i~~~~~~r----pev~nll~i~~~~--------------t~~~~eel~~~y~--~~~~gdlK~~Lae 351 (405)
||+|+||+... .+-..++. +++|++|+||.++ +++++++++++|. +++|++||+.|++
T Consensus 253 I~~A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~eel~~~y~~G~l~~~dlK~~lae 332 (690)
T 3p0j_A 253 IRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAFVSDEVSEDALKSCLID 332 (690)
T ss_dssp HHTSCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTTTSTTCCEEETTEEESSHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHhCcCCCcccccccccCCCCcccCCCCchHHHHHHHhhcccccccccccCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999997652 11122333 5899999999987 3468999999997 4899999999999
Q ss_pred HHHHHhhHHHHHHHHHhcCHHHHHHHHH
Q 015509 352 ALIEHLHPIQVRYEEIMSDSAYLDKVLA 379 (405)
Q Consensus 352 ~i~~~L~pirer~~e~~~~~~~l~~iL~ 379 (405)
+|+++|+|||+||++..++++++++|++
T Consensus 333 ~i~~~L~Pirer~~~~~~~~~~l~~v~~ 360 (690)
T 3p0j_A 333 EVNALLEPVRQHFASNEEAHELLEAVKS 360 (690)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 9999999999999999999999999875
No 20
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=2.4e-61 Score=490.07 Aligned_cols=269 Identities=20% Similarity=0.260 Sum_probs=221.4
Q ss_pred CCceEEEeeCCC-CcchhhhHHHHH-HHHHHhc--------c-------CC-CcChHHHHHHHHHHHHHHHHcCCCCCce
Q 015509 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQ--------I-------TL-PYDTQQLSKATRETAAIYLACGIDNSKA 138 (405)
Q Consensus 77 ~~~~i~sGi~PT-G~lHLGnylg~i-~~~~~lQ--------i-------t~-~~d~~~l~~~~~~~~~~~lA~GiDp~k~ 138 (405)
+++++|+|++|| |.||||||++++ .+|++-. | +. ..+++.+++++++++++|+|+||||+|+
T Consensus 73 ~~~~vy~G~~PTa~~lHlGh~v~~~~~~~lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~kt 152 (393)
T 3hv0_A 73 ELFYLYTGRGPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELT 152 (393)
T ss_dssp CCCEEEEEECCSSSSCBSTTHHHHHHHHHHHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTE
T ss_pred CCeEEEeCCCCCCCCccHHHHHHHHHHHHHHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCcce
Confidence 468999999999 689999999998 8883321 1 22 4688999999999999999999999999
Q ss_pred EEEEcCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhC-CCCCcchhhhhhHHHhhhhh-------cc-c---ccee
Q 015509 139 SVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL-------LY-Q---SDFV 206 (405)
Q Consensus 139 ~if~qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl-------~~-~---adlV 206 (405)
+||+||+|++. +...+.||.|+++++++.+..+ ++++++|+|+||+||||||| ++ + +|+|
T Consensus 153 ~i~~ns~~~~~--------~~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~lv 224 (393)
T 3hv0_A 153 FIFTNLEYIAE--------LYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLV 224 (393)
T ss_dssp EEEEHHHHHHH--------HHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEE
T ss_pred EEEECCHHHHH--------HHHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCceec
Confidence 99999999751 1345668889999998877765 46789999999999999996 33 3 4889
Q ss_pred ccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCC
Q 015509 207 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 286 (405)
Q Consensus 207 pvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Ds 286 (405)
|||.||++|+++|||+|+||| +++|..+.. ++||||+++++|||||+++ |+|+|+|+
T Consensus 225 p~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gLdG~~~KMSKS~~n--saI~L~D~ 281 (393)
T 3hv0_A 225 PHAIDQDPYFRMVRDVAPRLG------------------YLKPSSIHS---IFLPSLQGSQTKMSASVQN--SSIFVNDN 281 (393)
T ss_dssp EEEGGGHHHHHHHHHHTGGGT------------------CCCCEEEEE---CCCCC-------------C--CCCBTTCC
T ss_pred ccccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCCCCCCcCCCCCCCC--CeEeccCC
Confidence 999999999999999999988 577887765 4999994434799999974 89999999
Q ss_pred HHHHHHHhhc-ccCCCCCCcccCC--CCCCccchHHHHHHhh--CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHHhhH
Q 015509 287 KDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHP 359 (405)
Q Consensus 287 pe~I~kKI~k-A~Td~~~~i~~~~--~~rpev~nll~i~~~~--t~~~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~p 359 (405)
|++|++|||+ |+||+..++++++ +++|+++++++||++| +++++++++++|+ +++|++||+.|+++|+++|+|
T Consensus 282 p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~eei~~~y~~G~l~~g~~K~~lae~i~~~l~p 361 (393)
T 3hv0_A 282 EESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKLTKN 361 (393)
T ss_dssp HHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999888764 7899999999999999 4668999999997 689999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHH
Q 015509 360 IQVRYEEIMSDSAYLDKVL 378 (405)
Q Consensus 360 irer~~e~~~~~~~l~~iL 378 (405)
+|+||+++++| .|++++
T Consensus 362 irer~~~~~~d--~~~~~~ 378 (393)
T 3hv0_A 362 HQKNREAINDD--VIAKFT 378 (393)
T ss_dssp HHHHHHTCCHH--HHHHHH
T ss_pred HHHHHHHHHHh--HHHHHh
Confidence 99999999875 377766
No 21
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=4.3e-62 Score=495.79 Aligned_cols=277 Identities=17% Similarity=0.209 Sum_probs=206.8
Q ss_pred CCCceEEEeeCCCC-cchhhhHHHH-HHHHHHhc---------------cCCCcChHHHHHHHHHHHHHHHHcCCCCCce
Q 015509 76 SVKKRIVSGVQPTG-SIHLGNYLGA-IKNWIALQ---------------ITLPYDTQQLSKATRETAAIYLACGIDNSKA 138 (405)
Q Consensus 76 ~~~~~i~sGi~PTG-~lHLGnylg~-i~~~~~lQ---------------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~ 138 (405)
.+++++|+|++||| .||||||+++ +.+|++-. ++.+.+++.+++++++++++|+|+||||+|+
T Consensus 76 ~~~~~vy~G~~PTg~~lHLGh~v~~~~~~~lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt 155 (395)
T 3i05_A 76 GQPFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELT 155 (395)
T ss_dssp TCCEEEEEEECCCSSCCBGGGSHHHHHHHHHHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSE
T ss_pred CCCeEEEEeecCCCccchHHHHHHHHHHHHHHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCce
Confidence 35789999999999 6999999998 48893321 1224688999999999999999999999999
Q ss_pred EEEEcCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhC-CCCCcchhhhhhHHHhh--------hhhccc----cce
Q 015509 139 SVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMAS--------DILLYQ----SDF 205 (405)
Q Consensus 139 ~if~qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAA--------DIl~~~----adl 205 (405)
+||.||+|++ .| ...+.+|.|+++|+++.+..+ .+++++|+|+||+|||| |||+|+ +|+
T Consensus 156 ~i~~ns~~~~----~~----~~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~l 227 (395)
T 3i05_A 156 FIFRDFDYMG----CM----YRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCL 227 (395)
T ss_dssp EEEEHHHHTT----TS----HHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEEE
T ss_pred EEEEcCHHHH----HH----HHHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCceE
Confidence 9999999976 12 245778999999999887765 46789999999999999 677898 999
Q ss_pred eccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCC
Q 015509 206 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 285 (405)
Q Consensus 206 VpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D 285 (405)
||||.||++|+++|||+|+||| +++|..+.. ++||||+++++||||| + +|+|+|+|
T Consensus 228 vp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gLdG~~~KMSKS-~--~~~I~L~D 283 (395)
T 3i05_A 228 IPQAIDQDPYFRLTRDIAPRLG------------------YLKPAVIHS---KFFPGLSGPKGKMSSS-S--GTAVLLTD 283 (395)
T ss_dssp EEEEGGGHHHHHHHHHTHHHHT------------------CCCCEEEEE---CCCCCC----------------CCBTTC
T ss_pred EEeccchHHHHHHHHHHHHHcC------------------CCCceeecc---ccccCCCCCcccCCCC-C--CCcccCCC
Confidence 9999999999999999999998 466777654 4999994434799999 4 69999999
Q ss_pred CHHHHHHHhhc-ccCCCCCCccc--CCCCCCccchHHHHHHhh--CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHHhh
Q 015509 286 PKDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLH 358 (405)
Q Consensus 286 spe~I~kKI~k-A~Td~~~~i~~--~~~~rpev~nll~i~~~~--t~~~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~ 358 (405)
+|++|++|||+ |+||+..++++ +++++|+++|+|+||++| +++++++|+++|+ +++|++||+.|++.|+++|+
T Consensus 284 ~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~lae~i~~~l~ 363 (395)
T 3i05_A 284 TEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGEVKKLLINTITAITK 363 (395)
T ss_dssp CHHHHHHHHC----------------------CCHHHHHHHHHCCCSHHHHHHCC-------CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHHHHHcCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999887665 567899999999999999 4668999999997 48999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHH----HHHHHHHH
Q 015509 359 PIQVRYEEIMSDSAYLDKVL----ADGAAKAA 386 (405)
Q Consensus 359 pirer~~e~~~~~~~l~~iL----~~Ga~kAr 386 (405)
|||+||+++++| .+++.+ ..||+||.
T Consensus 364 pirer~~~~~~d--~~~~~~~~~~~~~~~~~~ 393 (395)
T 3i05_A 364 THQEKRKLVTDE--DVQLFTSTRIMGPAKKAA 393 (395)
T ss_dssp HHHHHHTTCCHH--HHHHHHSCCCCTTTTC--
T ss_pred HHHHHHHHHHHh--HHHHHhChhcccchhhhc
Confidence 999999998864 466665 36776653
No 22
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=6.1e-61 Score=492.71 Aligned_cols=269 Identities=21% Similarity=0.283 Sum_probs=231.2
Q ss_pred CCCceEEEeeCCC-CcchhhhHHHHH-HHHHHhc--------cCC--------CcChHHHHHHHHHHHHHHHHcCCCCCc
Q 015509 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQ--------ITL--------PYDTQQLSKATRETAAIYLACGIDNSK 137 (405)
Q Consensus 76 ~~~~~i~sGi~PT-G~lHLGnylg~i-~~~~~lQ--------it~--------~~d~~~l~~~~~~~~~~~lA~GiDp~k 137 (405)
.+++++|+||+|| |.||||||++++ .+|++-. |+- ..+++.+++++++++++|+|+||||+|
T Consensus 89 g~p~~vytG~dPTagsLHLGH~v~~~~l~~lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpek 168 (451)
T 3foc_A 89 GHPIYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDK 168 (451)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHHHHHHHHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred CCCeEEEecCCCCCCCccHHHHHHHHHHHHHHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 3478999999999 889999999998 8893321 221 357899999999999999999999999
Q ss_pred eEEEEcCCchh---hhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhc--------------
Q 015509 138 ASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL-------------- 200 (405)
Q Consensus 138 ~~if~qS~v~~---h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~-------------- 200 (405)
++||+||+|++ +.++.|.+++.++++++.+..+|+ +++++|+|+||+|||||||.
T Consensus 169 t~i~~nSd~~~~~~~~~~l~~L~r~~Tv~~m~~~~~f~--------~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~~ 240 (451)
T 3foc_A 169 TFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFS--------NDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLP 240 (451)
T ss_dssp EEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHCCC--------SSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBCC
T ss_pred eEEEeCchhhcchhHHHHHHHHHhhCCHHHHHhhcccC--------CCCchHHHhhHHHHHHHHHHhhcCCCCccccccc
Confidence 99999999965 677888888888888888776653 56899999999999999983
Q ss_pred ----------------------------cccc-----------------eeccccchHHHHHHHHHHHHHHhhhhCCccc
Q 015509 201 ----------------------------YQSD-----------------FVPVGEDQKQHLELTRELAERVNYLYGGRKW 235 (405)
Q Consensus 201 ----------------------------~~ad-----------------lVpvG~DQ~~hleLtRdia~r~n~~~g~~~~ 235 (405)
|++| +||||+||+||+|||||||++||
T Consensus 241 ~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn-------- 312 (451)
T 3foc_A 241 VGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMG-------- 312 (451)
T ss_dssp -------------------------CCCCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTT--------
T ss_pred cccccchhhhhhhhhhccccccchhhhhhhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhC--------
Confidence 3334 99999999999999999999998
Q ss_pred cccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhc-ccCCCCCCccc--CCCCC
Q 015509 236 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR-CKTDSSAGLEF--DNLER 312 (405)
Q Consensus 236 ~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~k-A~Td~~~~i~~--~~~~r 312 (405)
+++|..+.. ++||||+++++|||||+++ |+|+|+|+|++|++|||+ |+||+..++++ .++++
T Consensus 313 ----------~~~p~~~~~---~~l~gLdG~~~KMSKS~~n--s~I~l~D~p~~I~kKI~k~A~Td~~~~~~~~~~~~g~ 377 (451)
T 3foc_A 313 ----------HPKNAYLLG---KFLPGLQGSGTKMSASDPN--SAIYLTDTPAQIKNKINRYAFSGGRDTEEEHRAFGAD 377 (451)
T ss_dssp ----------SCCCEEEEE---CCCCBTTBTTCCCCTTCGG--GSCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHTTCCC
T ss_pred ----------CCCCeeecC---CcccCCCCCCCccCCCCCC--CeeeecCCHHHHHHHHhhhccCCCCccchhcccCCCC
Confidence 567876654 5999995555799999974 899999999999999999 99999887765 56799
Q ss_pred CccchHHHHHHhhC--CCCHHHHHHHHh--cCCcchHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHH
Q 015509 313 PECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 377 (405)
Q Consensus 313 pev~nll~i~~~~t--~~~~eel~~~y~--~~~~gdlK~~Lae~i~~~L~pirer~~e~~~~~~~l~~i 377 (405)
|++||+|+||.+|+ ++++++|+++|. +++|++||+.|++.|+++|+|||+||+++++ +.|++.
T Consensus 378 p~~~~v~~~l~~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~l~~--d~v~~f 444 (451)
T 3foc_A 378 LSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDT--TMIESF 444 (451)
T ss_dssp TTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCH--HHHHHH
T ss_pred cchhhHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence 99999999999994 568999999997 5899999999999999999999999999875 345544
No 23
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.3e-58 Score=457.94 Aligned_cols=250 Identities=24% Similarity=0.319 Sum_probs=220.7
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHhc---------------cCC-CcChHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015509 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 140 (405)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------------it~-~~d~~~l~~~~~~~~~~~lA~GiDp~k~~i 140 (405)
++++||+|++|||.|||||+ +++.+|+++| ++. .++++.+++++++++++|+|+|+||+|+.|
T Consensus 31 ~~~~vy~G~~PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~i 109 (323)
T 2cyb_A 31 EKPRAYVGYEPSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAKF 109 (323)
T ss_dssp SCCEEEEEECCCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCEE
T ss_pred CCCEEEECcCCCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 46799999999999999986 6788999998 121 348999999999999999999999999999
Q ss_pred EEcCCch---hhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchHHHHH
Q 015509 141 FVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 217 (405)
Q Consensus 141 f~qS~v~---~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hle 217 (405)
|+||+|+ +|.++.|.++|.+++++|.|+.+++.+ .. ++.++|+|+||+||||||++|++|+||||.||++|++
T Consensus 110 ~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~--~~--~~~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~ 185 (323)
T 2cyb_A 110 VLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSR--RK--EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHM 185 (323)
T ss_dssp EEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCS--CS--SSCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred EEcchhccchHHHHHHHHHhCccCHHHHhccchhhcc--cc--CCCCchhhhhHHHHHHHHHhcCCCEEEechhhHHHHH
Confidence 9999995 789999999999999999998877632 11 3459999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhcc
Q 015509 218 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 297 (405)
Q Consensus 218 LtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~kA 297 (405)
++|++|++|| +++|..++.+ +||+| +| +||||| + +|+|+|+|+|++|++||++|
T Consensus 186 l~rdla~~~~------------------~~~p~~l~~p---ll~~l-~G-~KMSKS-~--~n~I~l~d~p~~i~~Ki~~a 239 (323)
T 2cyb_A 186 LARENLPRLG------------------YSSPVCLHTP---ILVGL-DG-QKMSSS-K--GNYISVRDPPEEVERKIRKA 239 (323)
T ss_dssp HHHHHGGGGT------------------CCCCEEEEEC---CCBCT-TS-SBCCTT-T--TCSCBTTCCHHHHHHHHHTS
T ss_pred HHHHHHHhcC------------------CCCceEEecC---cccCC-CC-CcccCC-c--CceeCCCCCHHHHHHHHHhc
Confidence 9999999988 3457666654 99999 67 699999 3 58999999999999999999
Q ss_pred cCCCCCCcccCCCCCCccchHHHHHHhh--------------------CCCCHHHHHHHHhc--CCcchHHHHHHHHHHH
Q 015509 298 KTDSSAGLEFDNLERPECNNLLSIYQLI--------------------SGKTKGEVAEECQN--MNWGTFKPLLTDALIE 355 (405)
Q Consensus 298 ~Td~~~~i~~~~~~rpev~nll~i~~~~--------------------t~~~~eel~~~y~~--~~~gdlK~~Lae~i~~ 355 (405)
+||+. .++.|++++|++++ +++++++++++|.+ ++|++||+.|+++|++
T Consensus 240 ~td~~---------~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~G~~~~~~~~~~l~~~~~~g~~~~~~~K~~la~~i~~ 310 (323)
T 2cyb_A 240 YCPAG---------VVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPLDLKIAVAKYLNM 310 (323)
T ss_dssp CCCTT---------CCTTCHHHHHHHHTHHHHHSCEEECCCGGGTCCEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred CCCCC---------CCCcChHHHHHHHHhccccCceeEechhhcCCCCCcccHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99864 35678999999987 34599999999984 8999999999999999
Q ss_pred HhhHHHHHHHH
Q 015509 356 HLHPIQVRYEE 366 (405)
Q Consensus 356 ~L~pirer~~e 366 (405)
+|+|||++|++
T Consensus 311 ~l~pir~~~~~ 321 (323)
T 2cyb_A 311 LLEDARKRLGV 321 (323)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhc
Confidence 99999999975
No 24
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=5.1e-58 Score=470.70 Aligned_cols=269 Identities=19% Similarity=0.282 Sum_probs=227.9
Q ss_pred CCCceEEEeeCCC-CcchhhhHHHHH-HHHHHhc--------c---C----CCcChHHHHHHHHHHHHHHHHcCCCCCce
Q 015509 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQ--------I---T----LPYDTQQLSKATRETAAIYLACGIDNSKA 138 (405)
Q Consensus 76 ~~~~~i~sGi~PT-G~lHLGnylg~i-~~~~~lQ--------i---t----~~~d~~~l~~~~~~~~~~~lA~GiDp~k~ 138 (405)
.++++||+||+|| |.||||||++++ .+|++.+ | | -..+++.+++++++++++|+|+|+||+|+
T Consensus 106 ~~~~~vy~G~dPTag~LHLGh~v~~~~~~~lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt 185 (437)
T 1r6u_A 106 KKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKT 185 (437)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGE
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccce
Confidence 3478999999999 899999999987 7885531 1 1 02467889999999999999999999999
Q ss_pred EEEEcCCchh----hhHHHHHHhccccHHHHhhhhcHHHHhHhhC-CCCCcchhhhhhHHHhhhhhc-----------cc
Q 015509 139 SVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------YQ 202 (405)
Q Consensus 139 ~if~qS~v~~----h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~-----------~~ 202 (405)
+||+||+|+. +.++.| +++||++++++.++.+ .+++++|+|+||+|||||||+ |+
T Consensus 186 ~i~~nSd~~~~l~~~~~l~~---------~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~ 256 (437)
T 1r6u_A 186 FIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDI 256 (437)
T ss_dssp EEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCC
T ss_pred EEEechhhhhhHHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccCC
Confidence 9999999985 555554 5668999988877654 467899999999999999999 78
Q ss_pred cceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceee
Q 015509 203 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 282 (405)
Q Consensus 203 adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 282 (405)
+|+||||.||++|++|+||+|+||| |++|..+.. ++||||+++++|||||+++ |+|+
T Consensus 257 ~~lVpvG~DQ~~~i~l~Rdla~r~~------------------~~~P~~l~~---pll~gLdG~~~KMSKS~~n--saI~ 313 (437)
T 1r6u_A 257 QCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPALQGAQTKMSASDPN--SSIF 313 (437)
T ss_dssp EEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEETTEEEEECCTTSSS--SCCB
T ss_pred ceEEEeehhhHHHHHHHHHHHHHhC------------------CCCceEeec---ccccCCCCCccccCCCCCC--Ceee
Confidence 8999999999999999999999988 577887654 4999994334799999963 7999
Q ss_pred cCCCHHHHHHHhhc-ccCCCCCCcccCC--CCCCccchHHHHHHhhC--CCCHHHHHHHHhc--CCcchHHHHHHHHHHH
Q 015509 283 LLDPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGTFKPLLTDALIE 355 (405)
Q Consensus 283 L~Dspe~I~kKI~k-A~Td~~~~i~~~~--~~rpev~nll~i~~~~t--~~~~eel~~~y~~--~~~gdlK~~Lae~i~~ 355 (405)
|+|+|++|++|||+ |+||+..++++++ +++|++++++.|+++|+ ++++++|+++|.+ ++++++|+.||+.|++
T Consensus 314 L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K~~LAe~i~~ 393 (437)
T 1r6u_A 314 LTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQP 393 (437)
T ss_dssp TTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCSTTHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999 9999976655543 37899999999999985 4578889999973 8999999999999999
Q ss_pred HhhHHHHHHHHHhcCHHHHHHHH
Q 015509 356 HLHPIQVRYEEIMSDSAYLDKVL 378 (405)
Q Consensus 356 ~L~pirer~~e~~~~~~~l~~iL 378 (405)
+|+|+|+||++++++ .+++.+
T Consensus 394 ~l~~~rer~~~~~~~--~~~~~~ 414 (437)
T 1r6u_A 394 LIAEHQARRKEVTDE--IVKEFM 414 (437)
T ss_dssp HHHHHHHHHHTCCHH--HHHHHT
T ss_pred HHHHHHHHHHHHHHH--HHHHhc
Confidence 999999999998753 344443
No 25
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=1.1e-56 Score=444.60 Aligned_cols=244 Identities=25% Similarity=0.289 Sum_probs=212.1
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHhc---------------cCC-CcChHHHHHHHHHHHHHHHHcCCCCCceE
Q 015509 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITL-PYDTQQLSKATRETAAIYLACGIDNSKAS 139 (405)
Q Consensus 76 ~~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------------it~-~~d~~~l~~~~~~~~~~~lA~GiDp~k~~ 139 (405)
.++++||+||+|||.||||| ++++.+|+++| ++. .++++.+++++++++++|+|+|+| +.
T Consensus 26 ~~~~~vy~G~~PTg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d---~~ 101 (314)
T 2zp1_A 26 KDEKSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK---AK 101 (314)
T ss_dssp SSSEEEEEEECCCSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC---CE
T ss_pred CCCCEEEEccCCCCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC---eE
Confidence 34689999999999999999 77889999999 121 358899999999999999999998 78
Q ss_pred EEEcCCchhhhHHHHH----HhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchHHH
Q 015509 140 VFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 215 (405)
Q Consensus 140 if~qS~v~~h~el~w~----L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~h 215 (405)
|++||+|+++ +++|. ++|.+++++|+|+.+|+++. . +..++|+|+||+||||||++|++|+||||.||++|
T Consensus 102 ~~~qs~~~~~-~~~~~~~~~l~~~~t~~~l~~~~~~~~~~--~--~~~~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~ 176 (314)
T 2zp1_A 102 YVYGSEFQLD-KDYTLNVYRLALKTTLKRARRSMELIARE--D--ENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKI 176 (314)
T ss_dssp EEEGGGTTTS-HHHHHHHHHHHHHSCHHHHHHHTTTTSCC--C--SSCCTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHH
T ss_pred EEECChhhcc-hHHHHHHHHHHCcCcHHHHhccchhhhhc--c--CCCCchhhhhHHHHHHhHHhhCCCEEEcChhHHHH
Confidence 9999999866 45555 99999999999999998643 2 23499999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhh
Q 015509 216 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 295 (405)
Q Consensus 216 leLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 295 (405)
++|+|++++ ++|..+.. ++|||| +|++||||| + +|+|+|+|+|++|++|||
T Consensus 177 ~~l~R~i~~----------------------~~~~~~~~---~~l~~l-~G~~KMSKS-~--~~~I~L~d~~~~i~~KI~ 227 (314)
T 2zp1_A 177 HMLARELLP----------------------KKVVCIHN---PVLTGL-DGEGKMSSS-K--GNFIAVDDSPEEIRAKIK 227 (314)
T ss_dssp HHHHHHHSS----------------------SCCEEEEE---CCCBCT-TSSSBCCTT-T--TCSCBTTCCHHHHHHHHH
T ss_pred HHHHHHhcC----------------------CCcEEeec---cccccC-CcccccCCC-C--cceecCCCCHHHHHHHHH
Confidence 999999863 23555444 599999 587899999 4 589999999999999999
Q ss_pred cccCCCCCCcccCCCCCCccchHHHHHHhh-----------------CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHH
Q 015509 296 RCKTDSSAGLEFDNLERPECNNLLSIYQLI-----------------SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEH 356 (405)
Q Consensus 296 kA~Td~~~~i~~~~~~rpev~nll~i~~~~-----------------t~~~~eel~~~y~--~~~~gdlK~~Lae~i~~~ 356 (405)
+|+||+.. ++.|++|+||+++ ++++++||+++|. +++|++||+.||+.|+++
T Consensus 228 ~a~td~~~---------~~~~~~~~~~~~~~~~~~~i~r~~k~g~~~~~~~~eei~~~~~~g~~~~~~~K~~la~~i~~~ 298 (314)
T 2zp1_A 228 KAYCPAGV---------VEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMYLKNAVAEELIKI 298 (314)
T ss_dssp HSCCCTTC---------CTTCHHHHHHHHHCCSSEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred hCCCCCCC---------CCCCcHHHHHHHHhcCCcceeehhhccCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99998743 4678999999987 4559999999997 479999999999999999
Q ss_pred hhHHHHHHHH
Q 015509 357 LHPIQVRYEE 366 (405)
Q Consensus 357 L~pirer~~e 366 (405)
|+|+|++|+.
T Consensus 299 l~p~r~~~~~ 308 (314)
T 2zp1_A 299 LEPIRKRLLE 308 (314)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHc
Confidence 9999999974
No 26
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=1.9e-57 Score=471.64 Aligned_cols=261 Identities=20% Similarity=0.288 Sum_probs=223.0
Q ss_pred CCceEEEeeCCC-CcchhhhHHHHH-HHHHHhc--------c---C--C--CcChHHHHHHHHHHHHHHHHcCCCCCceE
Q 015509 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQ--------I---T--L--PYDTQQLSKATRETAAIYLACGIDNSKAS 139 (405)
Q Consensus 77 ~~~~i~sGi~PT-G~lHLGnylg~i-~~~~~lQ--------i---t--~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~~ 139 (405)
++++||+||+|| |.||||||+|++ .+|++-+ | | + ..+++.+++++++++++|+|+|+||+|++
T Consensus 154 ~~~~vy~G~dPTag~LHLGh~v~~~~~~~lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k~~ 233 (477)
T 1r6t_A 154 KPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTF 233 (477)
T ss_dssp CCEEEEEEECCCTTCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEE
T ss_pred CCcEEEEcccCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCceE
Confidence 478999999999 899999999987 7895531 1 1 0 24678899999999999999999999999
Q ss_pred EEEcCCchh----hhHHHHHHhccccHHHHhhhhcHHHHhHhhC-CCCCcchhhhhhHHHhhhhhc-----------ccc
Q 015509 140 VFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------YQS 203 (405)
Q Consensus 140 if~qS~v~~----h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~-----------~~a 203 (405)
||+||+|++ +.++.| +|+|+++++++.++.+ .+++++|+|+||+|||||||+ |++
T Consensus 234 i~~nsd~~~~l~~~~~~~~---------~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~ 304 (477)
T 1r6t_A 234 IFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQ 304 (477)
T ss_dssp EEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCE
T ss_pred EEechhhhcccHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccCCc
Confidence 999999985 555555 5557777777766544 367899999999999999999 578
Q ss_pred ceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeec
Q 015509 204 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 283 (405)
Q Consensus 204 dlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L 283 (405)
|+||||.||++|++++||||+||| |++|..++. ++||||+++++|||||+++ ++|+|
T Consensus 305 ~~VpvG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---pll~gLdG~~~KMSKS~~n--saI~L 361 (477)
T 1r6t_A 305 CLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPALQGAQTKMSASDPN--SSIFL 361 (477)
T ss_dssp EEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEETTEEEEECCTTSTT--CCCBT
T ss_pred eeEeccccHHHHHHHHHHHHHHhC------------------CCCceeeec---ccccCCCCCccccCCCCCC--Cceee
Confidence 999999999999999999999988 577887664 4999994334699999964 79999
Q ss_pred CCCHHHHHHHhhc-ccCCCCCCcccCC--CCCCccchHHHHHHhhC--CCCHHHHHHHHhc--CCcchHHHHHHHHHHHH
Q 015509 284 LDPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGTFKPLLTDALIEH 356 (405)
Q Consensus 284 ~Dspe~I~kKI~k-A~Td~~~~i~~~~--~~rpev~nll~i~~~~t--~~~~eel~~~y~~--~~~gdlK~~Lae~i~~~ 356 (405)
+|+|++|++|||+ |+||+..++++++ +++|++++++.||++|+ ++++++|+++|.+ ++++++|+.||+.|+++
T Consensus 362 ~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K~~Lae~i~~~ 441 (477)
T 1r6t_A 362 TDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPL 441 (477)
T ss_dssp TCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhccccccCCccchhhccccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999 9999976655443 38899999999999985 4578899999973 89999999999999999
Q ss_pred hhHHHHHHHHHhc
Q 015509 357 LHPIQVRYEEIMS 369 (405)
Q Consensus 357 L~pirer~~e~~~ 369 (405)
|+|||+||+++++
T Consensus 442 l~pirer~~~~~~ 454 (477)
T 1r6t_A 442 IAEHQARRKEVTD 454 (477)
T ss_dssp HHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 27
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-56 Score=454.15 Aligned_cols=264 Identities=23% Similarity=0.212 Sum_probs=211.1
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHhc--------------cCC-C-cChHHHHHHH----HHHHHHHHHcCCCCC
Q 015509 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITL-P-YDTQQLSKAT----RETAAIYLACGIDNS 136 (405)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ--------------it~-~-~d~~~l~~~~----~~~~~~~lA~GiDp~ 136 (405)
++++||+||+|||.||||||+++++.|..+| +|. + .+.+.++.++ ..+.+.|+|+|+||+
T Consensus 38 ~p~~vy~G~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~ 117 (394)
T 2dlc_X 38 RHLKLYWGTAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIE 117 (394)
T ss_dssp SCCEEEEEECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 4679999999999999999999999998777 121 2 2333444443 345567899999999
Q ss_pred ceEEEEcCCc---hhhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchH
Q 015509 137 KASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 213 (405)
Q Consensus 137 k~~if~qS~v---~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~ 213 (405)
++.||+||+| ++|.++.|.++|.+++++++|+.+.+ .+ . .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 118 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~--~r-~-~~~~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~ 193 (394)
T 2dlc_X 118 KLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADV--VK-Q-VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQR 193 (394)
T ss_dssp TCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTT--SC-C-CSSCCTHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred HcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhh--hc-c-cCCccceeeechhHhhccHhhhCCCEEecCccHH
Confidence 9999999998 67889999999999999999886532 22 1 2567999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHH
Q 015509 214 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 293 (405)
Q Consensus 214 ~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kK 293 (405)
+|++++|+++++|| +++|..++.+ +||+| +|.+|||||+++ ++|+|+|+|++|++|
T Consensus 194 ~~~~l~rdl~~r~~------------------~~~p~~l~~p---ll~gl-~~G~KMSKS~~n--s~I~L~D~p~~i~kK 249 (394)
T 2dlc_X 194 KIFVLAEENLPSLG------------------YKKRAHLMNP---MVPGL-AQGGKMSASDPN--SKIDLLEEPKQVKKK 249 (394)
T ss_dssp HHHHHHHHHGGGGT------------------CCCCEEEEEC---CCCCC-C----------C--CSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC------------------CCCCEEEecc---cccCC-CCCCcCCCCCCC--CEEeccCCHHHHHHH
Confidence 99999999999988 4678887764 99999 533799999963 679999999999999
Q ss_pred hhcccCCCCCCcccCCCCCCccchHHHHHH----------------------------hhCCCCHHHHHHHHhc--CCcc
Q 015509 294 IKRCKTDSSAGLEFDNLERPECNNLLSIYQ----------------------------LISGKTKGEVAEECQN--MNWG 343 (405)
Q Consensus 294 I~kA~Td~~~~i~~~~~~rpev~nll~i~~----------------------------~~t~~~~eel~~~y~~--~~~g 343 (405)
||+|+||+.. ++.++++.|++ +++++++++|+++|.+ ++++
T Consensus 250 I~ka~Td~~~---------~~d~~v~~y~k~~~~p~~~~~~~~g~~~~~i~~~~~~~~~~~~~~i~el~~~~~~g~~~~~ 320 (394)
T 2dlc_X 250 INSAFCSPGN---------VEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSFEEMKLAFKEEKLSPP 320 (394)
T ss_dssp HHHSCCCTTC---------CSSCHHHHHHHHTHHHHHHTSSSTTCCCEEECCCGGGSCCEEESSHHHHHHHHHTTSSCHH
T ss_pred HHHhcCCCCC---------CCcchHHHHHHhhhcchhhhcccCCCceEEEeccccccCcCCHHHHHHHHHHHhcCCCCHH
Confidence 9999998743 44556666644 3456799999999984 8999
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHH
Q 015509 344 TFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADG 381 (405)
Q Consensus 344 dlK~~Lae~i~~~L~pirer~~e~~~~~~~l~~iL~~G 381 (405)
+||+.||++|+++|+|+|++|+ ++++ ++++++.|
T Consensus 321 ~~K~~La~~i~~~l~p~r~~~~---~~~~-~~~~~~~~ 354 (394)
T 2dlc_X 321 DLKIGVADAINELLEPIRQEFA---NNKE-FQEASEKG 354 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH---CCHH-HHHHHhcc
Confidence 9999999999999999999987 4444 77887655
No 28
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=1.7e-55 Score=445.19 Aligned_cols=251 Identities=22% Similarity=0.206 Sum_probs=204.8
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHhc--------------cCC-CcChHHHHHHH---HH--HHHHHHHcCCCCC
Q 015509 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITL-PYDTQQLSKAT---RE--TAAIYLACGIDNS 136 (405)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ--------------it~-~~d~~~l~~~~---~~--~~~~~lA~GiDp~ 136 (405)
++++||+||+|||.||||||+++++.|..+| +|. +.++..+.++. .+ +.+.|+|+|+||+
T Consensus 34 ~~~~vy~G~~PTG~lHlG~~~~~l~~~~~~q~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~ 113 (372)
T 1n3l_A 34 RELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLE 113 (372)
T ss_dssp SCCEEEEEECCSSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred CCCEEEeCcCCCCcccHHHHHHHHHHHHHHHCCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 3679999999999999999999998887666 222 35566664443 33 3345799999999
Q ss_pred ceEEEEcCCch---hhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccceeccccchH
Q 015509 137 KASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 213 (405)
Q Consensus 137 k~~if~qS~v~---~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~ 213 (405)
|+.||+||+|+ ++.++.|.++|.+++++++|+.+. ..+ . .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 114 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~~--v~~-~-~~~~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~ 189 (372)
T 1n3l_A 114 KLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAE--VVK-Q-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQR 189 (372)
T ss_dssp TEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTTT--TSC-C-CSSCCHHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred hcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchhh--hhc-c-cCCCcceeeecchHhhccHHHhcCCEEEcChhHH
Confidence 99999999996 788899999999999999986331 111 1 2568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHH
Q 015509 214 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 293 (405)
Q Consensus 214 ~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kK 293 (405)
+|++++|+|+++|+ +.+|..++.+ +||+| +| +|||||+++ ++|+|+|+|++|++|
T Consensus 190 ~~~~l~rdl~~r~~------------------~~~p~~l~~p---ll~gl-dG-~KMSKS~~n--s~I~L~d~p~~i~kK 244 (372)
T 1n3l_A 190 KIFTFAEKYLPALG------------------YSKRVHLMNP---MVPGL-TG-SKMSSSEEE--SKIDLLDRKEDVKKK 244 (372)
T ss_dssp HHHHHHHHHGGGGT------------------CCCCEEEEEC---CCCCS-SC-C-------C--CSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC------------------CCCCEEEecC---ccCCC-Cc-ccccCCCCC--CeEeccCCHHHHHHH
Confidence 99999999999985 5678877754 99999 67 599999974 799999999999999
Q ss_pred hhcccCCCCCCcccCCCCCCccchHHHHHHh--------h------------CCCCHHHHHHHHhc--CCcchHHHHHHH
Q 015509 294 IKRCKTDSSAGLEFDNLERPECNNLLSIYQL--------I------------SGKTKGEVAEECQN--MNWGTFKPLLTD 351 (405)
Q Consensus 294 I~kA~Td~~~~i~~~~~~rpev~nll~i~~~--------~------------t~~~~eel~~~y~~--~~~gdlK~~Lae 351 (405)
||+|+||+.. ++.++++.|+++ | +++++++|+++|.+ +++++||+.||+
T Consensus 245 i~~A~td~~~---------~~d~~v~~~lk~~l~~~~~~f~~er~~~~g~~~~~~~i~el~~~~~~g~~~~~~~K~~La~ 315 (372)
T 1n3l_A 245 LKKAFCEPGN---------VENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEV 315 (372)
T ss_dssp HHTCCCCTTC---------CSSCHHHHHHHHTTGGGTTCEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHccCCCCC---------CCcccHHHHHHHhhhhhhcceeecccccccCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 9999998753 455678888775 3 45699999999984 899999999999
Q ss_pred HHHHHhhHHHHHHH
Q 015509 352 ALIEHLHPIQVRYE 365 (405)
Q Consensus 352 ~i~~~L~pirer~~ 365 (405)
.|+++|+|+|++|+
T Consensus 316 ~i~~~l~p~r~~~~ 329 (372)
T 1n3l_A 316 ALNKLLDPIREKFN 329 (372)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHhc
Confidence 99999999999997
No 29
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=1.2e-55 Score=453.19 Aligned_cols=272 Identities=19% Similarity=0.223 Sum_probs=225.8
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHhc------------cC-CCcCh------------HHHHHHHHHHHHHHHH
Q 015509 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQ------------IT-LPYDT------------QQLSKATRETAAIYLA 130 (405)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ------------it-~~~d~------------~~l~~~~~~~~~~~lA 130 (405)
+++++|+||+|||. ||||||+ .+.+|++|| .| +.+|| +.+++++..+.+.+.
T Consensus 36 ~~~~vy~G~dPTg~sLHlGh~v-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~- 113 (432)
T 1h3f_A 36 RPLTVKLGADPTRPDLHLGHAV-VLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAG- 113 (432)
T ss_dssp SCCEEEEEECTTCCSCBHHHHH-HHHHHHHHHHTTCEEEEEECCCC---------------------HHHHHHHHHHHT-
T ss_pred CCcEEEEcccCCCCCCchhhHH-HHHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHHH-
Confidence 47899999999996 9999999 578999999 12 23343 344444443333322
Q ss_pred cCCC--CCceEEEEcCCchhhhHHHHHH--hccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhcccccee
Q 015509 131 CGID--NSKASVFVQSHVRAHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 206 (405)
Q Consensus 131 ~GiD--p~k~~if~qS~v~~h~el~w~L--~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlV 206 (405)
+||| |+|++||+||+|+++..+.|.+ ++.+++++|.+..+||++... .+++++|+|+||+||||||++|++|+|
T Consensus 114 ~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~--~~~is~~ef~YPlLQaaDil~l~~~l~ 191 (432)
T 1h3f_A 114 KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA--GIPISLHELLYPFAQAYDSVAIRADVE 191 (432)
T ss_dssp TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT--TCCCBGGGGTHHHHHHHHHHHHTCSEE
T ss_pred HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhc--CCCCCccccchhhHHhhhhhhcCccEE
Confidence 8999 9999999999999887777776 889999999988899977643 267899999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCC
Q 015509 207 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 286 (405)
Q Consensus 207 pvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Ds 286 (405)
|||.||++|++++||++++||. ..|..+.. ++||++ ||++|||||++ |+|+|+|+
T Consensus 192 ~gG~DQ~~ni~l~rdlarr~~~------------------~~~~~lt~---pll~gl-dG~~KMSKS~~---n~I~L~ds 246 (432)
T 1h3f_A 192 MGGTDQRFNLLVGREVQRAYGQ------------------SPQVCFLM---PLLVGL-DGREKMSKSLD---NYIGLTEP 246 (432)
T ss_dssp EEEGGGHHHHHHHHHHHHHTTC------------------CCCEEEEE---CCCBCT-TSSSBCCGGGT---CCCBTTSC
T ss_pred EechHHHHHHHHHHHHHHHhCC------------------CCceEeec---ccccCC-CCccccCcCCC---CeeCCCCC
Confidence 9999999999999999999872 22333332 599998 78779999984 69999999
Q ss_pred HHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHHhhCCCCHHHHHHHHhcCCcchHHHHHHHHHHHHhh----HHHH
Q 015509 287 KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLH----PIQV 362 (405)
Q Consensus 287 pe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~~~~~gdlK~~Lae~i~~~L~----pire 362 (405)
|++|++||+++.+ ++++.||++|++.+++|+++.+.+ +++++|+.||+.|+++++ |||+
T Consensus 247 p~~i~~Ki~~~~d----------------~~v~~~l~~ft~~~~eei~~~~~~-~~~~~K~~LA~~i~~~l~~~~~pire 309 (432)
T 1h3f_A 247 PEAMFKKLMRVPD----------------PLLPSYFRLLTDLEEEEIEALLKA-GPVPAHRVLARLLTAAYALPQIPPRI 309 (432)
T ss_dssp HHHHHHHHHTSCG----------------GGHHHHHHHHCCCCHHHHHHHHHH-CHHHHHHHHHHHHHHHHHSSSCCSCC
T ss_pred HHHHHHHHhCCCc----------------cHHHHHHHHcCCCCHHHHHHHHhh-ChHHHHHHHHHHHHHHHhcccchHHH
Confidence 9999999999855 368999999999999999999988 999999999999999999 9999
Q ss_pred HHHHHhcCHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 015509 363 RYEEIMSDSAYLDKVLAD----GAAKAADIADATLNNV 396 (405)
Q Consensus 363 r~~e~~~~~~~l~~iL~~----Ga~kAr~iA~~tl~~V 396 (405)
||+++++ ++||++||++ |.+.|++ |.+.-+.+
T Consensus 310 rr~~~~~-~~~v~~il~~~~~~g~~~a~~-a~~~~~~~ 345 (432)
T 1h3f_A 310 DRAFYES-LGYAWEAFGRDKEAGPEEVRR-AEARYDEV 345 (432)
T ss_dssp SHHHHHH-TTCCGGGTTCCTTCSCHHHHH-HHHHHHHH
T ss_pred HHHHhhc-hHHHHHHHhhccccCHHHHHH-HHHHHHHh
Confidence 9999999 9999999999 9888764 44444444
No 30
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=1.3e-54 Score=431.13 Aligned_cols=248 Identities=15% Similarity=0.154 Sum_probs=210.5
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHhc---------------cCC-Cc---------ChHHHHHHH---HHHHHH
Q 015509 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQ---------------ITL-PY---------DTQQLSKAT---RETAAI 127 (405)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ---------------it~-~~---------d~~~l~~~~---~~~~~~ 127 (405)
++++||+||+|||. ||||||++ +.+|++|| ++. +. +++.+++++ +++++.
T Consensus 32 ~~~~vy~G~~PTg~slHlGh~l~-l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~~ 110 (322)
T 2yxn_A 32 GPIALVCGFDPTADSLHLGHLVP-LLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAP 110 (322)
T ss_dssp SCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHGG
T ss_pred CCCEEEEeecCCCCcccHHHHHH-HHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHHHHHHHHHH
Confidence 36899999999999 99999995 67999999 121 21 788999999 888999
Q ss_pred HHHcCCCCCceEEEEcCCchh-hhHHHHH--HhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhcc---
Q 015509 128 YLACGIDNSKASVFVQSHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 201 (405)
Q Consensus 128 ~lA~GiDp~k~~if~qS~v~~-h~el~w~--L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~--- 201 (405)
|+|+|+||+|++||.||+|+. +.++.|+ ++|.++++|+.|+.+||++.... .+++++|+|+||+||||||++|
T Consensus 111 ~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~~-~~~is~g~f~YP~LQaaDil~l~~~ 189 (322)
T 2yxn_A 111 FLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRE-DQGISFTEFSYNLLQGYDFACLNKQ 189 (322)
T ss_dssp GSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHCT-TCCCCHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhccC-CCCccchhhhHHHHHHHHHHHHhcc
Confidence 999999999999999999975 4788888 89999999999999999765421 2568999999999999999999
Q ss_pred -ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCce
Q 015509 202 -QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 280 (405)
Q Consensus 202 -~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 280 (405)
++|+++||.||+||++++||||+|||+ ..|..+.. ++||++ || +|||||++ |+
T Consensus 190 ~~~~v~~gG~DQ~~~i~l~rdla~r~n~------------------~~~~~l~~---pll~gl-dG-~KMSKS~~---n~ 243 (322)
T 2yxn_A 190 YGVVLCIGGSDQWGNITSGIDLTRRLHQ------------------NQVFGLTV---PLITKA-DG-TKFGKTEG---GA 243 (322)
T ss_dssp HCEEEEEECTTCHHHHHHHHHHHHHHHC------------------CCCEEEEC---CCCBCT-TS-CBTTEETT---EE
T ss_pred CCceEEecCchhHHHHHHHHHHHHHhCC------------------CCceeecc---CccCCC-Cc-ccccCCCC---Ce
Confidence 999999999999999999999999994 12334433 489998 78 69999985 69
Q ss_pred eecCC---CHHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHHhhCCCCHHHHHHHHh-cCCcchHHHHHHHHHHHH
Q 015509 281 INLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEH 356 (405)
Q Consensus 281 I~L~D---spe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~-~~~~gdlK~~Lae~i~~~ 356 (405)
|+|+| +|+++++||+++. ++++.+++.+|.+++++++++|+++|. +.+++++|+.||+.|+++
T Consensus 244 I~L~d~~tsp~~~~~ki~~~~-------------d~~v~~~l~~~~~~~~~~i~~l~~~~~~g~~~~~~K~~La~~i~~~ 310 (322)
T 2yxn_A 244 VWLDPKKTSPYKFYQFWINTA-------------DADVYRFLKFFTFMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRL 310 (322)
T ss_dssp CBSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHH
T ss_pred eeccCCCCCHHHHHHHHhCCC-------------cccHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999 9999999999862 134555555555556678999999997 569999999999999999
Q ss_pred hhHHHHHHH
Q 015509 357 LHPIQVRYE 365 (405)
Q Consensus 357 L~pirer~~ 365 (405)
|+|.++..+
T Consensus 311 l~~~~~~~~ 319 (322)
T 2yxn_A 311 VHGEEGLQA 319 (322)
T ss_dssp HHHHHHHHH
T ss_pred hCCHHHHHH
Confidence 999988754
No 31
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.6e-51 Score=420.49 Aligned_cols=247 Identities=15% Similarity=0.143 Sum_probs=208.4
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHhc---------------cC-CC--------cChHHHHHHHHHH---HHHH
Q 015509 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQ---------------IT-LP--------YDTQQLSKATRET---AAIY 128 (405)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ---------------it-~~--------~d~~~l~~~~~~~---~~~~ 128 (405)
+++++|+||+|||. |||||++ .+.+|++|| ++ .+ .+++.++++++++ ++.|
T Consensus 31 ~~~~iy~G~dPTg~sLHLGhlv-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~~~ 109 (432)
T 2jan_A 31 GPMTVYAGFDPTAPSLHAGHLV-PLLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTERIRGQLERF 109 (432)
T ss_dssp SCCEEEEEECCSSSSCBGGGHH-HHHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCcCHHHHH-HHHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 36899999999996 9999966 567999999 11 13 5678899998655 7789
Q ss_pred HHcCCCCCceEEEEcCCchh-hhHHHHH--HhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhcc----
Q 015509 129 LACGIDNSKASVFVQSHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 201 (405)
Q Consensus 129 lA~GiDp~k~~if~qS~v~~-h~el~w~--L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~---- 201 (405)
+|+|+||+|++||+||+|++ +.++.|+ ++|.+++++|.|+.+||++. . .+++++|+|+||+||||||++|
T Consensus 110 La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~--~-~~~is~~ef~YPlLQaaDil~l~~~~ 186 (432)
T 2jan_A 110 VDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL--A-GEGISYTEFSYLLLQANDYVELHRRH 186 (432)
T ss_dssp SCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT--S-TTCCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhh--c-CCCcchHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999987 4588888 89999999999999999765 2 2678999999999999999999
Q ss_pred ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCcee
Q 015509 202 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 281 (405)
Q Consensus 202 ~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 281 (405)
++|+||||.||++|++++||+|+|||. .+|..+.. ++||++ || +|||||+++ ++|
T Consensus 187 ~~~i~~gG~DQ~~ni~lgrdlarr~~~------------------~~~~~l~~---plL~~l-dG-~KMSKS~~n--saI 241 (432)
T 2jan_A 187 GCTLQIGGADQWGNIIAGVRLVRQKLG------------------ATVHALTV---PLVTAA-DG-TKFGKSTGG--GSL 241 (432)
T ss_dssp CCCEEEECSTTHHHHHHHHHHHHHHHC------------------CCCEEEEC---CCCBCT-TS-CBTTBCSSS--CBC
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCC------------------CCcccccc---ccccCC-Cc-CcCCCCCCC--CeE
Confidence 999999999999999999999999993 22333333 589998 78 699999863 699
Q ss_pred ecCC---CHHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHHhhCCCCHHHHHHHHh-cCCcchHHHHHHHHHHHHh
Q 015509 282 NLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEHL 357 (405)
Q Consensus 282 ~L~D---spe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~-~~~~gdlK~~Lae~i~~~L 357 (405)
+|+| +|++|++||+++. ++++.+++.+|.+++.+++++++++|. +.+++++|+.||+.|++++
T Consensus 242 ~L~d~~tsp~~i~qki~~~~-------------D~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~~K~~LA~~v~~~~ 308 (432)
T 2jan_A 242 WLDPQMTSPYAWYQYFVNTA-------------DADVIRYLRWFTFLSADELAELEQATAQRPQQRAAQRRLASELTVLV 308 (432)
T ss_dssp BSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHSCCCHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHH
T ss_pred EccCCCCCHHHHHHHHhcCC-------------chhHHHHHHHHHcCChHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 9999 9999999999952 144666666666666778999999997 5699999999999999999
Q ss_pred hHHHHHHH
Q 015509 358 HPIQVRYE 365 (405)
Q Consensus 358 ~pirer~~ 365 (405)
+...+..+
T Consensus 309 hg~~~~~~ 316 (432)
T 2jan_A 309 HGEAATAA 316 (432)
T ss_dssp HHHHHHHH
T ss_pred cCHHHHHH
Confidence 99765443
No 32
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=1.6e-51 Score=413.72 Aligned_cols=246 Identities=17% Similarity=0.148 Sum_probs=194.9
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHhc---------------cCC-Cc---------ChHHHHHHHHHHHHHHHH
Q 015509 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQ---------------ITL-PY---------DTQQLSKATRETAAIYLA 130 (405)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ---------------it~-~~---------d~~~l~~~~~~~~~~~lA 130 (405)
++++||+||+|||. |||||++ ++.+|++|| +|. +. +++.++++++++++.|+|
T Consensus 45 ~~~~vy~G~~PTg~sLHLGhl~-~l~~~~~lQ~~G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a 123 (356)
T 2pid_A 45 FPQTIYCGFDPTADSLHVGHLL-ALLGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEA 123 (356)
T ss_dssp -CCEEEEEECCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCcccHHHHH-HHHHHHHHHHCCCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHHH
Confidence 46899999999997 9999965 678999999 121 11 588999999999999999
Q ss_pred cCCCCCc-----------eEEEEcCCchhhhHHHHHHhc---cccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhh
Q 015509 131 CGIDNSK-----------ASVFVQSHVRAHVELMWLLSS---ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS 196 (405)
Q Consensus 131 ~GiDp~k-----------~~if~qS~v~~h~el~w~L~~---~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAA 196 (405)
+ +||++ ++||+||+|..+.++.|++.+ .+++++|.++.+||++... .+++++|+|+||+||||
T Consensus 124 ~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~--~~~is~g~f~YPvLQAa 200 (356)
T 2pid_A 124 L-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKS--PEGMSLAEFFYQVLQAY 200 (356)
T ss_dssp H-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTS--TTCCBHHHHHHHHHHHH
T ss_pred h-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHHHHhcchHHHHhhcc--CCCCchHHHHHHHHHHH
Confidence 9 88855 999999999888778887665 8899999999999865432 25789999999999999
Q ss_pred hhhcc----ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcccc
Q 015509 197 DILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 272 (405)
Q Consensus 197 DIl~~----~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSK 272 (405)
||++| ++|+||||.||+||++++||||+|||. + +|..+.. ++||++ || +||||
T Consensus 201 Dil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~--~----------------~~~~l~~---pll~~l-dG-~KMSK 257 (356)
T 2pid_A 201 DFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTG--E----------------DVFGITV---PLITST-TG-AKLGK 257 (356)
T ss_dssp HHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSS--C----------------CCEEEEE---CCCC-----------
T ss_pred HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCC--C----------------Ccccccc---ccccCC-Cc-ccccC
Confidence 99999 999999999999999999999999983 2 2333332 489998 78 69999
Q ss_pred CCCCCCceeecCC---CHHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHHhhCCCCHHHHHHHHh-cCCcchHHHH
Q 015509 273 SAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPL 348 (405)
Q Consensus 273 S~p~~~s~I~L~D---spe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~-~~~~gdlK~~ 348 (405)
|. +|+|+|+| +|++|++||+++. ++++.+++.+|.+++++++++|+++|. +.+++++|+.
T Consensus 258 S~---~naI~L~d~~tsp~~i~~ki~~~~-------------D~~v~~~l~~~t~~~~~~i~~l~~~~~~g~~~~~~K~~ 321 (356)
T 2pid_A 258 SA---GNAVWLNRDKTSPFELYQFFVRQP-------------DDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKR 321 (356)
T ss_dssp -------CCBSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGCHHHHH
T ss_pred CC---CCeeeccCCCCCHHHHHHHHHcCC-------------chhHHHHHHHHHcCCchHHHHHHHHHhcCCCHHHHHHH
Confidence 95 57999999 9999999999952 245667777777677788999999997 4789999999
Q ss_pred HHHHHHHHhhHHHHHHH
Q 015509 349 LTDALIEHLHPIQVRYE 365 (405)
Q Consensus 349 Lae~i~~~L~pirer~~ 365 (405)
||+.|+++|+..++..+
T Consensus 322 La~~v~~~l~g~~~~~~ 338 (356)
T 2pid_A 322 LAAEVTKLVHGREGLDS 338 (356)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHH
Confidence 99999999999766543
No 33
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=1.9e-49 Score=402.96 Aligned_cols=260 Identities=17% Similarity=0.127 Sum_probs=208.7
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHhc------------cC-CCc------------ChHHHHHHHHHHHHHHHH
Q 015509 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQ------------IT-LPY------------DTQQLSKATRETAAIYLA 130 (405)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ------------it-~~~------------d~~~l~~~~~~~~~~~lA 130 (405)
.++++|+||+|||. ||||||++ +.+|++|| .| +.+ +++.+++++.++.+.++|
T Consensus 63 ~~~~vy~G~dPTg~sLHlGhlv~-l~~l~~lQ~~G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~~i~~~~~a 141 (392)
T 1y42_X 63 RRIGAYVGIDPTAPSLHVGHLLP-LMPLFWMYLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLKK 141 (392)
T ss_dssp CCCEEEEEECCCSSSCBGGGHHH-HHHHHHHHHHTCEEEEEECTTTTTTCCCCC-----------CHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCCccHHHHHH-HHHHHHHHHcCCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHHHHHHHHHH
Confidence 36799999999999 99999995 67999999 12 122 556788999988888887
Q ss_pred cC-----------CC---CCceEEEEcCCc-hhhhHHHHH--HhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHH
Q 015509 131 CG-----------ID---NSKASVFVQSHV-RAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVL 193 (405)
Q Consensus 131 ~G-----------iD---p~k~~if~qS~v-~~h~el~w~--L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvL 193 (405)
+| +| |+++.||.||+| +++.++.|+ +++.+++++|.+..+||++... .+++++|+|+||+|
T Consensus 142 ~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~~--~~~is~gef~YPlL 219 (392)
T 1y42_X 142 LWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQ--GDGVSFAEFTYPIM 219 (392)
T ss_dssp HHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTSS--SSCCCHHHHHHHHH
T ss_pred HhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhcC--CCCcccHHHHHHHH
Confidence 65 45 789999999997 778889998 8889999987777788754321 36789999999999
Q ss_pred Hhhhhhcc----ccceeccccchHHHHHHHHHHHHHHhhhhCCc-----cccccCCCCCccccCCccccCCCCcccccCC
Q 015509 194 MASDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGR-----KWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 264 (405)
Q Consensus 194 QAADIl~~----~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~-----~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~ 264 (405)
||||||++ ++|+||||.||++|++++||||+|||+.|+.. ..+++| +.+|..+.. ++||+|
T Consensus 220 QAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~------~~~~~~l~~---pll~~l- 289 (392)
T 1y42_X 220 QGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTA------LDECVGFTV---PLLTDS- 289 (392)
T ss_dssp HHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSG------GGSCEEEEC---CCCBCT-
T ss_pred HHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccc------cCCcccccc---ccCcCC-
Confidence 99999987 59999999999999999999999999877310 011111 234544443 599999
Q ss_pred CCCCccccCCCCCCceeecCC---CHHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHHhhCCCCHHHHHHHHh-cC
Q 015509 265 DGLSKMSKSAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NM 340 (405)
Q Consensus 265 dg~~KMSKS~p~~~s~I~L~D---spe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~-~~ 340 (405)
|| +|||||. +|+|+|+| +|+++++||+++. ++++.+++.+|.+++++++++|+++|. +.
T Consensus 290 dG-~KMSKS~---~naI~L~d~~tsp~~i~qki~~~~-------------D~~v~~~l~~ft~l~~~ei~~l~~~~~~g~ 352 (392)
T 1y42_X 290 SG-AKFGKSA---GNAIWLDPYQTSVFDFYGYFVRRS-------------DQEVENLLKLFTFMPISEITKTMEEHIKDP 352 (392)
T ss_dssp TC-CBTTBCS---SSBCBSSTTTSCHHHHHHHHHTCC-------------TTTHHHHHHHHCCCCHHHHHHHHHHHHHCG
T ss_pred ch-hhccCCC---CCeeeccCCCCCHHHHHHHHHcCC-------------chhHHHHHHHHHhCChhHHHHHHHHHhcCC
Confidence 78 6999996 47999999 9999999999852 246677777777777788999999997 46
Q ss_pred CcchHHHHHHHHHHHHhhHHHHHHHH
Q 015509 341 NWGTFKPLLTDALIEHLHPIQVRYEE 366 (405)
Q Consensus 341 ~~gdlK~~Lae~i~~~L~pirer~~e 366 (405)
+++++|+.||+.|+++|++.++..+.
T Consensus 353 ~~~~~K~~LA~~v~~~lhg~~~~~~a 378 (392)
T 1y42_X 353 SKRVAQHTLAREVVTLVHGKQEASAA 378 (392)
T ss_dssp GGCHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 99999999999999999998776543
No 34
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=1.1e-49 Score=407.39 Aligned_cols=249 Identities=15% Similarity=0.152 Sum_probs=198.9
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHhc---------------cCC-Cc---------ChHHHHHHHHHH---HHH
Q 015509 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQ---------------ITL-PY---------DTQQLSKATRET---AAI 127 (405)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ---------------it~-~~---------d~~~l~~~~~~~---~~~ 127 (405)
+++++|+||+|||. ||||||++ +.+|++|| ++. +. +++.+++|+..+ ++.
T Consensus 29 ~~~~iy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q~~~ 107 (419)
T 2ts1_A 29 ERVTLYCGFDPTADSLHIGHLAT-ILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGR 107 (419)
T ss_dssp SCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHHHHHHHHHH
Confidence 36899999999999 99999995 67999999 111 21 788899998765 667
Q ss_pred HHHcCCCCCceEEEEcCCchhhhHHHHHHhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhcc----cc
Q 015509 128 YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY----QS 203 (405)
Q Consensus 128 ~lA~GiDp~k~~if~qS~v~~h~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~----~a 203 (405)
|+++|+||+|++||.||+|+.+..+.|+|.++.+..+++||.++.+++++. ++++++|+|+||+||||||++| ++
T Consensus 108 ~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k~r~-~~~is~~ef~YPlLQaaDil~l~~~~~~ 186 (419)
T 2ts1_A 108 FLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRI-ETGISFTEFSYMMLQAYDFLRLYETEGC 186 (419)
T ss_dssp SSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHHTTT-TTCCCHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhhhcc-CCCcchHHHHHHHHHHHHHHHHhccCCC
Confidence 889999999999999999988777777776544444444444444433333 3678999999999999999999 99
Q ss_pred ceeccccchHHHHHHHHHHHHHH-hhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceee
Q 015509 204 DFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 282 (405)
Q Consensus 204 dlVpvG~DQ~~hleLtRdia~r~-n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 282 (405)
|+||||.||++|++++||+|+|| |. .+|..+.. ++||++ || +|||||. +|+|+
T Consensus 187 ~i~~gG~DQ~~ni~lgrdlarr~~~~------------------~~~~~lt~---pll~~l-dG-~KMSKS~---~naI~ 240 (419)
T 2ts1_A 187 RLQIGGSDQWGNITAGLELIRKTKGE------------------ARAFGLTI---PLVTKA-DG-TKFGKTE---SGTIW 240 (419)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHHC--------------------CCEEEEE---CCCCCT-TS-CCTTCCS---SCCCB
T ss_pred cEEeccHHHHHHHHHHHHHHHHhcCC------------------CCeeeccc---ccccCC-Cc-ccccCCC---CCeEe
Confidence 99999999999999999999999 73 12333333 489998 78 6999997 47999
Q ss_pred cCC---CHHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHHhhCCCCHHHHHHHHh-cCCcchHHHHHHHHHHHHhh
Q 015509 283 LLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEHLH 358 (405)
Q Consensus 283 L~D---spe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~-~~~~gdlK~~Lae~i~~~L~ 358 (405)
|+| +|+++++|||++. ++++.+++.+|.+++.+++++++++|. +.+++++|+.||+.|+++++
T Consensus 241 L~d~~tsp~~i~qki~~~~-------------D~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~~K~~LA~~v~~~~h 307 (419)
T 2ts1_A 241 LDKEKTSPYEFYQFWINTD-------------DRDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLAEEVTKLVH 307 (419)
T ss_dssp SSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHhcCC-------------chhHHHHHHHHHcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 999 9999999999952 134556666666666678999999997 56999999999999999999
Q ss_pred HHHHHHHH
Q 015509 359 PIQVRYEE 366 (405)
Q Consensus 359 pirer~~e 366 (405)
...+..+.
T Consensus 308 g~~~~~~a 315 (419)
T 2ts1_A 308 GEEALRQA 315 (419)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 97765443
No 35
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=7.5e-49 Score=401.87 Aligned_cols=244 Identities=14% Similarity=0.145 Sum_probs=207.2
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHhc---------------cCC-Cc---------ChHHHHHHHHHHHHHHHH
Q 015509 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQ---------------ITL-PY---------DTQQLSKATRETAAIYLA 130 (405)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ---------------it~-~~---------d~~~l~~~~~~~~~~~lA 130 (405)
+++++|+||+|||. ||||||++ +.+|++|| ++. +. +++.+++|+.++.+.+++
T Consensus 31 ~~~~iy~G~dPTg~sLHlGh~v~-l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~~~~~~~ 109 (420)
T 1jil_A 31 EQVTLYCGADPTADSLHIGHLLP-FLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHN 109 (420)
T ss_dssp SCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHHHHHHHHH
Confidence 36799999999999 99999995 67999999 121 21 788999999999999999
Q ss_pred cCCCC---CceEEEEcCCch-hhhHHHHHH--hccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhcc---
Q 015509 131 CGIDN---SKASVFVQSHVR-AHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 201 (405)
Q Consensus 131 ~GiDp---~k~~if~qS~v~-~h~el~w~L--~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~--- 201 (405)
+ ||| +|++||.||+|+ ++.++.|+. ++.++++||.++.+||++. + +++++|+|+||+||||||++|
T Consensus 110 ~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~---~-~~is~~ef~YplLQaaD~l~l~~~ 184 (420)
T 1jil_A 110 I-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL---E-HGISYTEFTYTILQAIDFGHLNRE 184 (420)
T ss_dssp H-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH---T-TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred H-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhc---c-CCcchHHHHHHHHHHHHHHHHhcc
Confidence 9 888 999999999997 678999986 7999999999999998654 2 678999999999999999999
Q ss_pred -ccceeccccchHHHHHHHHHHHHHH-hhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCc
Q 015509 202 -QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 279 (405)
Q Consensus 202 -~adlVpvG~DQ~~hleLtRdia~r~-n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 279 (405)
++|+||||.||++|++++||+|+|| |. .+|..+.. ++||++ || +|||||+ +|
T Consensus 185 ~~~~i~~gG~DQ~~ni~~grdla~r~~~~------------------~~~~~l~~---pll~~l-dG-~KMSKS~---~n 238 (420)
T 1jil_A 185 LNCKIQVGGSDQWGNITSGIELMRRMYGQ------------------TDAYGLTI---PLVTKS-DG-KKFGKSE---SG 238 (420)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHHCC------------------CCCEEEEE---CCCBCT-TS-CBTTBCS---SS
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhcCC------------------CCeeEeec---ccccCC-cc-ccccCCC---CC
Confidence 9999999999999999999999999 73 12333333 489998 78 6999998 47
Q ss_pred eeecCC---CHHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHHhhCCCCHHHHHHHHh-cCCcchHHHHHHHHHHH
Q 015509 280 RINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIE 355 (405)
Q Consensus 280 ~I~L~D---spe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~-~~~~gdlK~~Lae~i~~ 355 (405)
+|+|+| +|++|++||+++. ++++.+++.+|.+++.+++++++++|. +.+++++|+.||+.|++
T Consensus 239 aI~L~d~~tsp~~i~~ki~~~~-------------D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~~~~~K~~La~~v~~ 305 (420)
T 1jil_A 239 AVWLDAEKTSPYEFYQFWINQS-------------DEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEEVTK 305 (420)
T ss_dssp BCBSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGCHHHHHHHHHHHH
T ss_pred eEecCCCCCCHHHHHHHHhcCC-------------chhHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 999999 9999999999852 134556666666666678999999997 56999999999999999
Q ss_pred HhhHHHHHHH
Q 015509 356 HLHPIQVRYE 365 (405)
Q Consensus 356 ~L~pirer~~ 365 (405)
+++..++..+
T Consensus 306 ~~hg~~~~~~ 315 (420)
T 1jil_A 306 FIHGEDALND 315 (420)
T ss_dssp HHHCHHHHHH
T ss_pred HHcCHHHHHH
Confidence 9999765443
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=2.2e-44 Score=387.68 Aligned_cols=249 Identities=15% Similarity=0.193 Sum_probs=200.9
Q ss_pred CCCCCCCCceEEEeeCCCCcchhhhHHHHHH---HHHHhc--------c-------C--CCcChHHHHHHHHHHHHHHHH
Q 015509 71 VASSSSVKKRIVSGVQPTGSIHLGNYLGAIK---NWIALQ--------I-------T--LPYDTQQLSKATRETAAIYLA 130 (405)
Q Consensus 71 ~~~~~~~~~~i~sGi~PTG~lHLGnylg~i~---~~~~lQ--------i-------t--~~~d~~~l~~~~~~~~~~~lA 130 (405)
.++....+..|+|+- |||.+||||++++++ +|.+++ | . +.++++.+++++.+++++|+|
T Consensus 375 ~~~~~~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~a 453 (690)
T 3p0j_A 375 LPAAPAKPHACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKA 453 (690)
T ss_dssp -CCCCSSCEEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 344445567889888 999999999999765 454442 1 1 126789999999999999999
Q ss_pred cCCCCCceEEEEcCCchhh-hHHHHH----HhccccHHHHhhhhcHHHHhHhhCCCCCcchhhhhhHHHhhhhhccccce
Q 015509 131 CGIDNSKASVFVQSHVRAH-VELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF 205 (405)
Q Consensus 131 ~GiDp~k~~if~qS~v~~h-~el~w~----L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adl 205 (405)
+|+|| |++|++||+|... .+++|. ++..++++|+.+.. +.+++++|+|+||+||||||+++++|+
T Consensus 454 lG~d~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~---------~~~~~~i~~~~YPlmQaaDi~~l~aDi 523 (690)
T 3p0j_A 454 YGLPS-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELY---------GGEVRNAGQVIAALMRVATALMLSVSH 523 (690)
T ss_dssp HTCCT-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHT---------TSCCSSHHHHHHHHHHHHHHHHTTCSE
T ss_pred cCCCc-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHh---------CCCCcchHHHHHHHHHHhhhhccCCCE
Confidence 99998 8999999998643 256665 57788888877653 237789999999999999999999999
Q ss_pred eccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCC
Q 015509 206 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 285 (405)
Q Consensus 206 VpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D 285 (405)
+|+|+||++|++||||+|++++ +|..++. .++|+|.++..+||||++ +|+|+|+|
T Consensus 524 ~~gG~DQ~~~~~LaRd~~~~~~--------------------~~~~~~~---~~~P~L~gp~~~~~~~s~--~~~I~l~D 578 (690)
T 3p0j_A 524 VISTSLDGHINAFAREYTKERI--------------------DCVQTLE---GRIPALHRPGAAPAVLGA--DDVLYLDD 578 (690)
T ss_dssp EEECSTTTTTTHHHHHHTTTCS--------------------EEEECCC---CSSCCSSCCCC---------CCSCBTTC
T ss_pred EecccccHHHHHHHHHHHHhcc--------------------Ccccccc---cccccCCCcccccCCCCC--CCeeeccC
Confidence 9999999999999999998843 2444444 489999666555567754 69999999
Q ss_pred CHHHHHHHhhcccCCCCCCcccCCCCCCccchHHHHHHhh-------------------CCCCHHHHHHHHh--cCCcch
Q 015509 286 PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI-------------------SGKTKGEVAEECQ--NMNWGT 344 (405)
Q Consensus 286 spe~I~kKI~kA~Td~~~~i~~~~~~rpev~nll~i~~~~-------------------t~~~~eel~~~y~--~~~~gd 344 (405)
+|++|++|||+|||++ + .+.|++++|++++ +++++++|+++|. .+||+|
T Consensus 579 ~~~~i~~KI~kA~c~p---------~-ve~np~l~~~~~~~~~~~~~~i~r~~~~Gg~~~~~~~eel~~~y~~G~lhp~d 648 (690)
T 3p0j_A 579 NDMDIRRKIKKAYSAP---------N-EEANPVISVAQHLLAQHGALSIERGEANGGNVSYNTPEALVADCGSGALHPAD 648 (690)
T ss_dssp CHHHHHHHHHHSCCCT---------T-CSCSHHHHHHHHHHHHHSCEEECCCTTTTCCEEESSHHHHHHHHHSSSCCHHH
T ss_pred CHHHHHHHHHHhcCCC---------C-CCCChHHHHHHHHhccCCceEEechhhhCCCCCccCHHHHHHHHHcCCCCHHH
Confidence 9999999999999954 2 5678899999986 2469999999997 599999
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q 015509 345 FKPLLTDALIEHLHPIQVRYE 365 (405)
Q Consensus 345 lK~~Lae~i~~~L~pirer~~ 365 (405)
+|++|+++|+++|+|+|++|+
T Consensus 649 lK~~la~~l~~~l~p~Re~~~ 669 (690)
T 3p0j_A 649 LKAAVLQLLLDRSAQARALLN 669 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998
No 37
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.15 E-value=2.6e-11 Score=118.86 Aligned_cols=166 Identities=16% Similarity=0.199 Sum_probs=100.7
Q ss_pred CCCCcchhhhHHHHHHHHHHhc---------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchhh-hHHH--
Q 015509 86 QPTGSIHLGNYLGAIKNWIALQ---------ITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH-VELM-- 153 (405)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ---------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~h-~el~-- 153 (405)
.|||.+||||+..++.+|...+ |+-.++.+...+....+.+++.++|+++++. +++||+..+. .+..
T Consensus 13 sPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD~~R~~~~~~~~I~~dL~~LGl~~D~~-~~~qSer~~~y~~~~~~ 91 (298)
T 1nzj_A 13 SPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGD-VLWQSQRHDAYREALAW 91 (298)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSSC-CEEGGGCHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCCchhhHHHHHHHHHHHHHHcCCCCCCC-CeeeeCCHHHHHHHHHH
Confidence 5679999999999999997765 4444555556677888999999999999874 7999996432 2211
Q ss_pred -----HHHhccccHHHHhhhhc-HHHHhHh---hC---------------CCCCcchhhhhhH-HHhhhhhccccceecc
Q 015509 154 -----WLLSSATPIGWLNKMIQ-FKEKSHK---AG---------------GENVGVALLTYPV-LMASDILLYQSDFVPV 208 (405)
Q Consensus 154 -----w~L~~~~~~~~l~R~~~-~k~~~~~---~~---------------~~~~~~g~l~YPv-LQAADIl~~~adlVpv 208 (405)
+.+.|.++-.+|++... |....+. .+ -+..-.|.+.++. .+..|.+++++|-.|.
T Consensus 92 L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~R~dG~Pt 171 (298)
T 1nzj_A 92 LHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFA 171 (298)
T ss_dssp HHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEECTTSCBC
T ss_pred HHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEEECCCCCEe
Confidence 12568888888876411 0000000 00 0111234455554 4667777777666666
Q ss_pred -------------------ccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCc
Q 015509 209 -------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 269 (405)
Q Consensus 209 -------------------G~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~K 269 (405)
|.|+..+...-..+.+.|+ ++.|...+.+ +|.+. +| +|
T Consensus 172 Y~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG------------------~~~p~~~H~p---ll~~~-~g-~K 228 (298)
T 1nzj_A 172 YNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFG------------------WKVPDYIHLP---LALNP-QG-AK 228 (298)
T ss_dssp HHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEEC---BCCC-------
T ss_pred eeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcC------------------CCCCeEEEee---eeECC-CC-Cc
Confidence 9999887766666656654 4567766554 77787 67 69
Q ss_pred cccCCC
Q 015509 270 MSKSAP 275 (405)
Q Consensus 270 MSKS~p 275 (405)
|||++.
T Consensus 229 LSKR~g 234 (298)
T 1nzj_A 229 LSKQNH 234 (298)
T ss_dssp ------
T ss_pred ccccCC
Confidence 999974
No 38
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.08 E-value=4.7e-10 Score=116.96 Aligned_cols=189 Identities=17% Similarity=0.173 Sum_probs=128.1
Q ss_pred CCCCcchhhhHHHHHHHHHHhc---------cCCCcChHHHHHHHHHHHHHHHHcCCCCCce-------EEEEcCCchhh
Q 015509 86 QPTGSIHLGNYLGAIKNWIALQ---------ITLPYDTQQLSKATRETAAIYLACGIDNSKA-------SVFVQSHVRAH 149 (405)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ---------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~-------~if~qS~v~~h 149 (405)
.|||.|||||+..++-+|...+ |--.+..+...+....+..++..+||+++.. .+|+||+..+.
T Consensus 14 sPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~~~QS~r~~~ 93 (498)
T 2ja2_A 14 SPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPYRQSQRAEI 93 (498)
T ss_dssp CSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGGGCHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCCCCeeeecCHHH
Confidence 5779999999999999997655 2223444556778888999999999999974 58999997543
Q ss_pred hHHHH--------HHhccccHHHHhhhh---------cHHHHh---------H--hhCC--------C--CC-----cch
Q 015509 150 VELMW--------LLSSATPIGWLNKMI---------QFKEKS---------H--KAGG--------E--NV-----GVA 186 (405)
Q Consensus 150 ~el~w--------~L~~~~~~~~l~R~~---------~~k~~~---------~--~~~~--------~--~~-----~~g 186 (405)
-..+. .+.|.++-.+|+++- .|.... + ..|. . .+ -.|
T Consensus 94 y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G 173 (498)
T 2ja2_A 94 YRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLAWNDLVRG 173 (498)
T ss_dssp HHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSSCEEEEETTTE
T ss_pred HHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCCceEEEecccc
Confidence 32211 256899988886542 121110 0 0110 0 00 124
Q ss_pred hhhhhHHHhhhhhccccceecc-------------------ccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCcccc
Q 015509 187 LLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFK 247 (405)
Q Consensus 187 ~l~YPvLQAADIl~~~adlVpv-------------------G~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~ 247 (405)
.+.|+.-+.-|.+++++|-.|. |.|+..+...-+.+.+.||. +| .| ++
T Consensus 174 ~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~-~g------~g------~~ 240 (498)
T 2ja2_A 174 PVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR-IG------VA------ER 240 (498)
T ss_dssp EEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH-TT------SC------CC
T ss_pred eEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh-hc------CC------CC
Confidence 5677766777888777666666 99999999999999999976 53 11 56
Q ss_pred CCccccCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhc
Q 015509 248 VPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 296 (405)
Q Consensus 248 ~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~k 296 (405)
.|+..+.+ ++.+. +| +||||++.+ +.|.+ .|+.|..-+..
T Consensus 241 ~P~~~h~p---lil~~-~g-~KLSKR~g~----~~l~~~r~~G~~peAl~~~l~~ 286 (498)
T 2ja2_A 241 IPKFAHLP---TVLGE-GT-KKLSKRDPQ----SNLFAHRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp CCEEEEEC---CEECS-SS-SBCCTTSGG----GBHHHHHHHTCCHHHHHHHHHT
T ss_pred CCeEEEee---eeECC-CC-CcccccCCc----ccHHHHHhCCCCHHHHHHHHHH
Confidence 68766654 77786 67 699999742 33332 57777777765
No 39
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.02 E-value=3.1e-10 Score=118.14 Aligned_cols=190 Identities=16% Similarity=0.170 Sum_probs=121.2
Q ss_pred eEEEeeCCCCcchhhhHHHHHHHHHHhc---------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceE-------EEEc
Q 015509 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQ---------ITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFVQ 143 (405)
Q Consensus 80 ~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~-------if~q 143 (405)
++=-.=.|||.+||||+..++.+|...+ |.-.+..+...+....+..++..+||+++... .|+|
T Consensus 27 ~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~~gp~~Q 106 (488)
T 3afh_A 27 RVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQ 106 (488)
T ss_dssp EEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBG
T ss_pred eEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeCCcccccHHHHHHHHHHHHHcCCCCCcCCCCCCCCCCeee
Confidence 3434556789999999999999997654 33344455567778889999999999999753 6999
Q ss_pred CCchhh-hHHHHH-------HhccccHHHHhhh--hcHHHH--hHhhC---------C-C-----CCcchhhhhhHHHhh
Q 015509 144 SHVRAH-VELMWL-------LSSATPIGWLNKM--IQFKEK--SHKAG---------G-E-----NVGVALLTYPVLMAS 196 (405)
Q Consensus 144 S~v~~h-~el~w~-------L~~~~~~~~l~R~--~~~k~~--~~~~~---------~-~-----~~~~g~l~YPvLQAA 196 (405)
|+..+. .+..-. +.|.+|-.+|+++ +.|... ....| + . +.-.|.+.++.-+.-
T Consensus 107 Ser~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~~~~~~~~ 186 (488)
T 3afh_A 107 SERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLE 186 (488)
T ss_dssp GGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEEEEGGGSC
T ss_pred eCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEeecCCCCC
Confidence 996532 221111 3477777666652 111100 00001 0 0 001344455554445
Q ss_pred hhhccc-------------------cceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCC
Q 015509 197 DILLYQ-------------------SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAG 257 (405)
Q Consensus 197 DIl~~~-------------------adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~ 257 (405)
|.++++ .|+|.-|.|+..+...-..+.+.|+ ++.|+..+.+
T Consensus 187 D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG------------------~~~P~f~H~p-- 246 (488)
T 3afh_A 187 DFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPVFMHIP-- 246 (488)
T ss_dssp CEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT------------------CCCCEEEEEC--
T ss_pred CeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcC------------------CCCCeEEEEe--
Confidence 555554 4555559999999988888888875 5668766654
Q ss_pred cccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhc
Q 015509 258 ARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 296 (405)
Q Consensus 258 ~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~k 296 (405)
+|.+. +| +||||++.+ +.|.+ .|+.|..-+..
T Consensus 247 -li~~~-~g-~KLSKR~g~----~~l~~~r~~G~~peal~n~l~~ 284 (488)
T 3afh_A 247 -LILGS-DR-TPLSKRHGA----TSVEHFRREGILSRALMNYLAL 284 (488)
T ss_dssp -CEECT-TS-SBCCTTTSC----CBHHHHHHHTCCHHHHHHHHHH
T ss_pred -eeeCC-CC-CcccCcCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 78886 67 699999742 34432 58888887765
No 40
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.93 E-value=4.3e-10 Score=116.51 Aligned_cols=186 Identities=16% Similarity=0.142 Sum_probs=124.5
Q ss_pred CCCCcchhhhHHHHHHHHHHhc---------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceE-------EEEcCCchh-
Q 015509 86 QPTGSIHLGNYLGAIKNWIALQ---------ITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFVQSHVRA- 148 (405)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ---------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~-------if~qS~v~~- 148 (405)
.|||.+||||+..++-+|...+ |.-.+..+...+....+..++..+||+++... .|+||+..+
T Consensus 9 sPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~QS~r~~~ 88 (468)
T 1j09_A 9 SPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQSERLPL 88 (468)
T ss_dssp CCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCeeccCCHHH
Confidence 5789999999999999997654 33334445566778889999999999999753 499999654
Q ss_pred hhHHHH-------HHhccccHHHHhhhh-------------cHHHHhHh--hCC---------C--CC-----cchhhhh
Q 015509 149 HVELMW-------LLSSATPIGWLNKMI-------------QFKEKSHK--AGG---------E--NV-----GVALLTY 190 (405)
Q Consensus 149 h~el~w-------~L~~~~~~~~l~R~~-------------~~k~~~~~--~~~---------~--~~-----~~g~l~Y 190 (405)
+.+..- .+.|.++-.+|.++- +..+..+. .|. . .+ -.|.+.+
T Consensus 89 y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~~G~~~~ 168 (468)
T 1j09_A 89 YQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVY 168 (468)
T ss_dssp HHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEeccceeEee
Confidence 222111 145888888876532 22211111 110 0 01 1355778
Q ss_pred hHHHhhhhhccccceecc-------------------ccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCcc
Q 015509 191 PVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEP 251 (405)
Q Consensus 191 PvLQAADIl~~~adlVpv-------------------G~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~ 251 (405)
|..+.-|.+++++|..|. |.|+..|...-.-+.+.|+ ++.|+.
T Consensus 169 ~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------~~~p~~ 230 (468)
T 1j09_A 169 DNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFG------------------WEAPRF 230 (468)
T ss_dssp EGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHT------------------CCCCEE
T ss_pred cccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcC------------------CCCCeE
Confidence 887788998888777777 9999999988888888875 455765
Q ss_pred ccCCCCcccccCCCCCCccccCCCCCCceee-cCC---CHHHHHHHhhc
Q 015509 252 LIPPAGARVMSLTDGLSKMSKSAPSDQSRIN-LLD---PKDVIANKIKR 296 (405)
Q Consensus 252 l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~-L~D---spe~I~kKI~k 296 (405)
.+. ++|.+. +| .||||++.+ ..|. +.+ .|+.|..-+..
T Consensus 231 ~h~---~li~~~-~g-~klSKR~g~--~~l~~~~~~G~~peal~~~l~~ 272 (468)
T 1j09_A 231 YHM---PLLRNP-DK-TKISKRKSH--TSLDWYKAEGFLPEALRNYLCL 272 (468)
T ss_dssp EEE---CCCBCT-TS-CBCCTTTSC--CBHHHHHHTTCCHHHHHHHHHH
T ss_pred EEe---eeeeCC-CC-Cccccccch--hhHHHHHHCCCCHHHHHHHHHH
Confidence 544 377776 67 599999853 2221 112 58888877765
No 41
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.83 E-value=2.9e-08 Score=103.47 Aligned_cols=187 Identities=17% Similarity=0.177 Sum_probs=116.4
Q ss_pred eeCCCCcchhhhHHHHHHHHHHhc---------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh-hhHHH
Q 015509 84 GVQPTGSIHLGNYLGAIKNWIALQ---------ITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-HVELM 153 (405)
Q Consensus 84 Gi~PTG~lHLGnylg~i~~~~~lQ---------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~-h~el~ 153 (405)
.=.|||.+||||+..++-+|...+ |+-.++.+...+.+..+..++..+||+++. ..|.||+..+ +.+..
T Consensus 7 APSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dL~wLGl~wde-~~~~QS~r~~~y~~~~ 85 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDE-GPYFQSDRLDLYRQAI 85 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSSSSCCHHHHHHHHHHHHHTTCCCSE-EEEEGGGCHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCccccchHHHHHHHHHHHHcCCCCCC-CCccccCCHHHHHHHH
Confidence 345779999999999999997654 444455555677888899999999999986 4799999543 32222
Q ss_pred HH-------HhccccHHHHhhhh----------cHHH---------HhH--hhCCC-----CCc-----------chhhh
Q 015509 154 WL-------LSSATPIGWLNKMI----------QFKE---------KSH--KAGGE-----NVG-----------VALLT 189 (405)
Q Consensus 154 w~-------L~~~~~~~~l~R~~----------~~k~---------~~~--~~~~~-----~~~-----------~g~l~ 189 (405)
-. +.|.++-.+|+.+- .|.. ..+ ..|.. .++ -|.+.
T Consensus 86 ~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~~~ 165 (492)
T 2cfo_A 86 QTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVS 165 (492)
T ss_dssp HHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETTTEEEE
T ss_pred HHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecceeeee
Confidence 21 34777777665421 1111 000 01100 000 13333
Q ss_pred hhHHHh-hhhhcc------------------------ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCc
Q 015509 190 YPVLMA-SDILLY------------------------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 244 (405)
Q Consensus 190 YPvLQA-ADIl~~------------------------~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~ 244 (405)
++.-.. .|.+++ +.|+|.-|.|...+-..-..+.+.|+
T Consensus 166 ~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg----------------- 228 (492)
T 2cfo_A 166 WQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALG----------------- 228 (492)
T ss_dssp EEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTT-----------------
T ss_pred ecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcC-----------------
Confidence 343333 444444 45567799999999887777777654
Q ss_pred cccCCccccCCCCcccccCCCCCCccccCCCCCCceee-cCC---CHHHHHHHhhc
Q 015509 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN-LLD---PKDVIANKIKR 296 (405)
Q Consensus 245 ~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~-L~D---spe~I~kKI~k 296 (405)
++.|...+.+ +|.+. +| +|||||+.+ ..|. +.+ .|+.|..-+..
T Consensus 229 -~~~P~~~H~p---lil~~-~g-~KLSKr~g~--~~l~~~r~~G~~peal~~~l~~ 276 (492)
T 2cfo_A 229 -ATPPNFAHTP---LILNS-TG-QKLSKRDGV--TSISDFRAMGYLAPALANYMTL 276 (492)
T ss_dssp -CCCCEEEEEC---CEECS-SS-SBCCTTSSC--CBHHHHHHTTCCHHHHHHHHHH
T ss_pred -CCCceEEEee---eEECC-CC-CEecccCCc--ccHHHHHHCCCCHHHHHHHHHH
Confidence 4567766554 77886 67 699999843 2221 111 58888877765
No 42
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.73 E-value=1.2e-09 Score=116.12 Aligned_cols=191 Identities=16% Similarity=0.163 Sum_probs=117.2
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHhc---------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceE-------EEE
Q 015509 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------ITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFV 142 (405)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~-------if~ 142 (405)
.++=-.=.|||.|||||+.+++-+|...+ |.-.+......+....+..++..+||+++... .|+
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG~~gp~~ 209 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPYR 209 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCCCB
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCcChhhccHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCee
Confidence 34434467889999999999999996654 32233344566777888999999999999753 689
Q ss_pred cCCchhh-hHHHH-------HHhccccHHHHhhh--hcHHHH--hHhhC---------C------CCCcchhhhhhHHHh
Q 015509 143 QSHVRAH-VELMW-------LLSSATPIGWLNKM--IQFKEK--SHKAG---------G------ENVGVALLTYPVLMA 195 (405)
Q Consensus 143 qS~v~~h-~el~w-------~L~~~~~~~~l~R~--~~~k~~--~~~~~---------~------~~~~~g~l~YPvLQA 195 (405)
||+..+. .+..- .+.|.++-.+|+++ +.|... ....| + ...-.|.+.+|.-+.
T Consensus 210 qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~~~~~~~~~ 289 (592)
T 3al0_C 210 QSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTL 289 (592)
T ss_dssp STTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTTTCSEECCSSSS
T ss_pred eeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeecccceeeeccccC
Confidence 9996542 22111 14477766665542 011100 00000 0 001123444444444
Q ss_pred hhhhccc-------------------cceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCC
Q 015509 196 SDILLYQ-------------------SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPA 256 (405)
Q Consensus 196 ADIl~~~-------------------adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~ 256 (405)
-|.++++ .|+|.-|.|+..|...-+.+.+.|+ ++.|+..+.
T Consensus 290 ~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------~~~P~~~hl-- 349 (592)
T 3al0_C 290 EDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPVFMHI-- 349 (592)
T ss_dssp CCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTT------------------CCCCBCCEE--
T ss_pred CCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhC------------------CCCCeEEEe--
Confidence 4444444 5556669999999988887776654 456765544
Q ss_pred CcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhc
Q 015509 257 GARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 296 (405)
Q Consensus 257 ~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~k 296 (405)
++|.+. +| +||||++.+ +.|.+ .|+.|..-+..
T Consensus 350 -pli~~~-~g-~KLSKR~g~----~~l~~~~~~G~~peal~~~l~~ 388 (592)
T 3al0_C 350 -PLILGS-DR-TPLSKRHGA----TSVEHFRREGILSRALMNYLAL 388 (592)
T ss_dssp -CCCBCT-TS-SBCCTTTCS----SBHHHHHHTTCCHHHHHHHHTT
T ss_pred -eeeeCC-CC-CcccccCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 377886 67 699999843 33332 58888888765
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.29 E-value=5.5e-06 Score=86.08 Aligned_cols=191 Identities=16% Similarity=0.111 Sum_probs=110.9
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHhc---------cCCCcChHHHHHHHHHHHHHHHHcCCCCCce-------EEEE
Q 015509 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------ITLPYDTQQLSKATRETAAIYLACGIDNSKA-------SVFV 142 (405)
Q Consensus 79 ~~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~-------~if~ 142 (405)
.+....=.|||.|||||..+++-+|.--. +.-.+......+....+..++..+|++++.. -.|.
T Consensus 14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y~ 93 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGGDHGPYR 93 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCB
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCCCCCcee
Confidence 46677788999999999999998885433 3323334445667778888899999998863 2578
Q ss_pred cCCchh-hhHHHHH-------HhccccHHHHhhhh----------cHH----HH-------hH--hhCC-----------
Q 015509 143 QSHVRA-HVELMWL-------LSSATPIGWLNKMI----------QFK----EK-------SH--KAGG----------- 180 (405)
Q Consensus 143 qS~v~~-h~el~w~-------L~~~~~~~~l~R~~----------~~k----~~-------~~--~~~~----------- 180 (405)
||+-.+ +.+..-. +.|.++-.+|..+- .|. +. .+ ..|.
T Consensus 94 QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~G~~~~iR~k~~~~ 173 (481)
T 2o5r_A 94 QSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVFFKMPRK 173 (481)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEEEECCCSS
T ss_pred eeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhcCCcceEEEEcCCC
Confidence 998322 2221111 23444443332210 000 00 00 0010
Q ss_pred --------------CCCcchhh------hhhHHHhhhhh---ccccceeccccchHHHHHHHHHHHHHHhhhhCCccccc
Q 015509 181 --------------ENVGVALL------TYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 237 (405)
Q Consensus 181 --------------~~~~~g~l------~YPvLQAADIl---~~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~ 237 (405)
++..+|-+ .||..+-|+++ ..+.|+|..|.||..|...-.-+.+.|+
T Consensus 174 ~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG---------- 243 (481)
T 2o5r_A 174 DYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFE---------- 243 (481)
T ss_dssp CEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTT----------
T ss_pred ceEEEecccceeEeccccCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcC----------
Confidence 00011100 13444433332 3578999999999999988777777654
Q ss_pred cCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhc
Q 015509 238 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 296 (405)
Q Consensus 238 ~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~k 296 (405)
++.|...+.+ ++.+. +| +||||++.+ ..|.| .|+.|..-+..
T Consensus 244 --------~~~p~~~H~p---lil~~-~G-~KLSKR~g~----~~l~~~~~~G~~peal~~~l~~ 291 (481)
T 2o5r_A 244 --------KAPPVFAHVS---TILGP-DG-KKLSKRHGA----TSVEAFRDMGYLPEALVNYLAL 291 (481)
T ss_dssp --------CCCCEEEEEC---CEECT-TS-SBCCGGGSC----CBHHHHHHHTCCHHHHHHHHHT
T ss_pred --------CCCCeEEEEe---eEECC-CC-CcccCcCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 5567655543 66665 67 599999843 23332 47777766654
No 44
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.20 E-value=1.8e-05 Score=82.37 Aligned_cols=89 Identities=20% Similarity=0.159 Sum_probs=56.2
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHhc---------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCch-
Q 015509 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------ITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR- 147 (405)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~- 147 (405)
+.++=-.=.|||.+||||+..++-+|...+ |+-.++.....+.+..+..++..+||+++. ..|.||+..
T Consensus 25 ~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dl~wlGl~~d~-~~~~qS~r~~ 103 (490)
T 4g6z_A 25 PVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDE-GPYYQMQRMD 103 (490)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSE-EEEEGGGCHH
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCCCcccccHHHHHHHHHHHHHcCCCCCC-CCcccccCHH
Confidence 344444455669999999999999986654 343344445667788899999999999987 478999942
Q ss_pred hhhHHHHH-------HhccccHHHHhh
Q 015509 148 AHVELMWL-------LSSATPIGWLNK 167 (405)
Q Consensus 148 ~h~el~w~-------L~~~~~~~~l~R 167 (405)
.+.+..-. +.|.++-.+|+.
T Consensus 104 ~y~~~~~~Li~~G~aY~C~ct~eel~~ 130 (490)
T 4g6z_A 104 RYREVLAQMQEKGLVYPCYMSTEELDA 130 (490)
T ss_dssp HHHHHHHHHHHTTSEEEECC-------
T ss_pred HHHHHHHHHHHCCCEEeCCCCHHHHHH
Confidence 23222211 457777776654
No 45
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.74 E-value=0.0001 Score=77.63 Aligned_cols=168 Identities=21% Similarity=0.183 Sum_probs=89.6
Q ss_pred EEEeeCC--CCcchhhhHHHHHHHHHHhc---------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCch-h
Q 015509 81 IVSGVQP--TGSIHLGNYLGAIKNWIALQ---------ITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR-A 148 (405)
Q Consensus 81 i~sGi~P--TG~lHLGnylg~i~~~~~lQ---------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~-~ 148 (405)
+.+=|.| ||.+||||...++-+|..-. |+-.++.....+.+..+..++..+||+++ ..+.||+.. .
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~~R~~~e~~~~I~edL~wLGl~wd--~~~~qSdr~~~ 174 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWD--ETVIQSDRMET 174 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCTTHHHHHHHHHHHHTCCCS--EEEEGGGGHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCC--CCcccccCHHH
Confidence 4455555 59999999999988885543 44445555555677888899999999997 589999953 3
Q ss_pred hhHHHHH-------HhccccHHHHhhhh-----------cHHHHhH-----hhCCC--------------CCc-------
Q 015509 149 HVELMWL-------LSSATPIGWLNKMI-----------QFKEKSH-----KAGGE--------------NVG------- 184 (405)
Q Consensus 149 h~el~w~-------L~~~~~~~~l~R~~-----------~~k~~~~-----~~~~~--------------~~~------- 184 (405)
+.+..-. +.|.++-.++.... +..+... ..|.+ +.+
T Consensus 175 y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~~Dfvl~ 254 (553)
T 3aii_A 175 YYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSM 254 (553)
T ss_dssp HHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGGGTTCEEE
T ss_pred HHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCCCCCcEEE
Confidence 3222222 33566655553210 1100000 01100 000
Q ss_pred ---------chh--hhhhHHH---hhhhhccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc
Q 015509 185 ---------VAL--LTYPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 250 (405)
Q Consensus 185 ---------~g~--l~YPvLQ---AADIl~~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~ 250 (405)
.|- ..||..+ +.|..+.+.|+|..|.|...|-..=.-+...++ ++.|.
T Consensus 255 R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG------------------~~~P~ 316 (553)
T 3aii_A 255 RIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLG------------------WEPPE 316 (553)
T ss_dssp EECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHT------------------CCCCE
T ss_pred EecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcC------------------CCCCe
Confidence 011 1355444 445556789999999998877655444444443 45677
Q ss_pred cccCCCCcccccCCCCCCccccCC
Q 015509 251 PLIPPAGARVMSLTDGLSKMSKSA 274 (405)
Q Consensus 251 ~l~~~~~~~l~sL~dg~~KMSKS~ 274 (405)
..+.+ +| .+ +| .|||||.
T Consensus 317 y~H~~---~L-~~-~g-~KLSKR~ 334 (553)
T 3aii_A 317 FIHYG---RL-KM-DD-VALSTSG 334 (553)
T ss_dssp EECCC---CB-C---------CHH
T ss_pred EEEee---EE-ec-CC-ceechhh
Confidence 66544 66 44 67 5999995
No 46
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.31 E-value=0.00056 Score=71.48 Aligned_cols=172 Identities=22% Similarity=0.227 Sum_probs=99.5
Q ss_pred EEEee--CCCCcchhhhHHHHHHHHHHhc-------cCC--CcChHHHHHHHHHHHHHHHHcCCCCCce-------EEEE
Q 015509 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQ-------ITL--PYDTQQLSKATRETAAIYLACGIDNSKA-------SVFV 142 (405)
Q Consensus 81 i~sGi--~PTG~lHLGnylg~i~~~~~lQ-------it~--~~d~~~l~~~~~~~~~~~lA~GiDp~k~-------~if~ 142 (405)
|-|=| .|||.+||||...++-+|..-. +-+ .+......+....+..++.-+||+++.. ..|+
T Consensus 25 vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~py~ 104 (512)
T 4gri_A 25 TRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWLGISFDEGPVVGGDYAPYV 104 (512)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCB
T ss_pred eeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCCHHHHHHHHHHHHHcCCCCCcCCccCCCCCCcc
Confidence 33444 4569999999999998985543 222 2222334455667777888899998753 3579
Q ss_pred cCCchhh----hHHHHH----HhccccHHHHhhhhcHH-------------------HHhHh--hC---------C-C-C
Q 015509 143 QSHVRAH----VELMWL----LSSATPIGWLNKMIQFK-------------------EKSHK--AG---------G-E-N 182 (405)
Q Consensus 143 qS~v~~h----~el~w~----L~~~~~~~~l~R~~~~k-------------------~~~~~--~~---------~-~-~ 182 (405)
||+-.+. .+..+. +.|.++-.++++.-.-. +.... .+ + + +
T Consensus 105 QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~k~~~~~~ 184 (512)
T 4gri_A 105 QSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRFKIPLEGD 184 (512)
T ss_dssp GGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCSSCE
T ss_pred ccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceeeecccccCC
Confidence 9985332 221111 45788877665432211 10000 00 0 0 0
Q ss_pred C-----cchhhhh--------hHHHhhhhh------------ccccceeccccchHHHHHHHHHHHHHHhhhhCCccccc
Q 015509 183 V-----GVALLTY--------PVLMASDIL------------LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 237 (405)
Q Consensus 183 ~-----~~g~l~Y--------PvLQAADIl------------~~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~ 237 (405)
+ -.|.+.+ +++.-+|.. ..+.++|.-|.|-..+-..=.-|.+-|+
T Consensus 185 ~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg---------- 254 (512)
T 4gri_A 185 TSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFK---------- 254 (512)
T ss_dssp EEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT----------
T ss_pred ceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcC----------
Confidence 0 0122221 122222221 2368999999999888766666666654
Q ss_pred cCCCCCccccCCccccCCCCcccccCCCCCCccccCCC
Q 015509 238 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 275 (405)
Q Consensus 238 ~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p 275 (405)
++.|...+.+ +|.+- +| +|+||.+.
T Consensus 255 --------~~~P~y~H~p---li~~~-~g-~kLSKR~~ 279 (512)
T 4gri_A 255 --------WKPPIYCHLP---MVMGN-DG-QKLSKRHG 279 (512)
T ss_dssp --------CCCCEEEEEC---CCBCT-TS-SBCCTTTS
T ss_pred --------CCCCeEEecc---hhccc-cc-cccCcccc
Confidence 6778877765 77775 67 69999974
No 47
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=97.11 E-value=0.00065 Score=70.18 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=42.1
Q ss_pred CceEEEeeC--CCCcchhhhHHHHH-----HHHHHhc------cC---C------------CcChHH-HHHHHHHHHHHH
Q 015509 78 KKRIVSGVQ--PTGSIHLGNYLGAI-----KNWIALQ------IT---L------------PYDTQQ-LSKATRETAAIY 128 (405)
Q Consensus 78 ~~~i~sGi~--PTG~lHLGnylg~i-----~~~~~lQ------it---~------------~~d~~~-l~~~~~~~~~~~ 128 (405)
+..+++|-- |||.+||||....+ ..|.+++ ++ - ..+++. ..++.....+++
T Consensus 5 ~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 84 (497)
T 2csx_A 5 KKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLW 84 (497)
T ss_dssp CEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 345556655 56999999988754 3454454 11 0 112333 445566778889
Q ss_pred HHcCCCCCceEEEEcCC
Q 015509 129 LACGIDNSKASVFVQSH 145 (405)
Q Consensus 129 lA~GiDp~k~~if~qS~ 145 (405)
.++|++++. ++..++
T Consensus 85 ~~lgi~~d~--~~~t~~ 99 (497)
T 2csx_A 85 EFLKIEYTK--FIRTTD 99 (497)
T ss_dssp HHTTCCCSE--EEETTS
T ss_pred HHhCCcCCC--CccCCC
Confidence 999999883 666776
No 48
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=97.10 E-value=0.0013 Score=67.76 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=40.9
Q ss_pred ceEEEeeCC--CCcchhhhHHHHH-----HHHHHhc------cC---CCc------------ChHH-HHHHHHHHHHHHH
Q 015509 79 KRIVSGVQP--TGSIHLGNYLGAI-----KNWIALQ------IT---LPY------------DTQQ-LSKATRETAAIYL 129 (405)
Q Consensus 79 ~~i~sGi~P--TG~lHLGnylg~i-----~~~~~lQ------it---~~~------------d~~~-l~~~~~~~~~~~l 129 (405)
..+++|--| +|.+||||....+ ..|.+++ ++ -.+ ++.. ..++.....+++.
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 456677666 7999999988754 4455555 11 111 1322 3344556777888
Q ss_pred HcCCCCCceEEEEcCC
Q 015509 130 ACGIDNSKASVFVQSH 145 (405)
Q Consensus 130 A~GiDp~k~~if~qS~ 145 (405)
++|++++ .++..++
T Consensus 84 ~lgi~~d--~~~~t~~ 97 (500)
T 2d5b_A 84 LLGIAYD--DFIRTTE 97 (500)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HhCCcCC--CCcccCC
Confidence 9999988 3566666
No 49
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=97.06 E-value=0.0027 Score=66.30 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=39.1
Q ss_pred CceEEEeeCC--CCcchhhhHHHHH-----HHHHHhc---------cCCCc------------ChHH-HHHHHHHHHHHH
Q 015509 78 KKRIVSGVQP--TGSIHLGNYLGAI-----KNWIALQ---------ITLPY------------DTQQ-LSKATRETAAIY 128 (405)
Q Consensus 78 ~~~i~sGi~P--TG~lHLGnylg~i-----~~~~~lQ---------it~~~------------d~~~-l~~~~~~~~~~~ 128 (405)
+...++|-=| ||.+||||..+++ ..+.+++ ++-.+ +++. ..+......+++
T Consensus 25 ~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 104 (536)
T 4dlp_A 25 EKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMA 104 (536)
T ss_dssp CEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3455566655 4999999988754 4454444 11111 2333 234455667788
Q ss_pred HHcCCCCCceEEEEcCC
Q 015509 129 LACGIDNSKASVFVQSH 145 (405)
Q Consensus 129 lA~GiDp~k~~if~qS~ 145 (405)
.++|++++ .++.-++
T Consensus 105 ~~lgi~~d--~~~~t~~ 119 (536)
T 4dlp_A 105 EVLNSSND--DYIRTSE 119 (536)
T ss_dssp HHTTCCCS--EEEETTS
T ss_pred HHcCCCCC--cceeCCC
Confidence 89999988 3444443
No 50
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=95.49 E-value=0.011 Score=62.35 Aligned_cols=86 Identities=12% Similarity=-0.040 Sum_probs=57.5
Q ss_pred eEEEeeCCCCcchhhhHHHHHHHHHHhc---------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh-h
Q 015509 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQ---------ITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 149 (405)
Q Consensus 80 ~i~sGi~PTG~lHLGnylg~i~~~~~lQ---------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~~-h 149 (405)
+.=-+=.|||.+||||.-.++-+|..-. |+-.++.....+....+..++..+||+++. ..+.||+..+ +
T Consensus 28 ~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~~R~~~e~~~~I~edL~wLGl~wde-~~~~qSer~~~~ 106 (553)
T 1qtq_A 28 HTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSG-NVRYSSDYFDQL 106 (553)
T ss_dssp EEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSS-SCEEGGGGHHHH
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCchhcCHHHHHHHHHHHHHcCCCCCC-CCeehcccHHHH
Confidence 3334556779999999999988885533 444445555567778889999999999854 3799998543 3
Q ss_pred hHHHHH-------HhccccHHHHh
Q 015509 150 VELMWL-------LSSATPIGWLN 166 (405)
Q Consensus 150 ~el~w~-------L~~~~~~~~l~ 166 (405)
.+.+-. +.|.++-.+|.
T Consensus 107 ~~~a~~Li~~G~AY~c~ct~eel~ 130 (553)
T 1qtq_A 107 HAYAIELINKGLAYVDELTPEQIR 130 (553)
T ss_dssp HHHHHHHHHTTSEEEECCCHHHHH
T ss_pred HHHHHHHHHCCCceecCCCHHHHH
Confidence 333322 23666655553
No 51
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=95.47 E-value=0.019 Score=59.28 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=37.2
Q ss_pred EEEeeCCCCcchhhhHHHHH-----HHHHHhc---------cCCCcC------------hHH-HHHHHHHHHHHHHHcCC
Q 015509 81 IVSGVQPTGSIHLGNYLGAI-----KNWIALQ---------ITLPYD------------TQQ-LSKATRETAAIYLACGI 133 (405)
Q Consensus 81 i~sGi~PTG~lHLGnylg~i-----~~~~~lQ---------it~~~d------------~~~-l~~~~~~~~~~~lA~Gi 133 (405)
.++|.-|.|.+||||....+ ..|.+++ +|-.++ +.. ..+++....+++.++|+
T Consensus 29 YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~LgI 108 (462)
T 3tqo_A 29 YVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRV 108 (462)
T ss_dssp EECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 34788888999999987754 4465555 232222 222 24455667778889999
Q ss_pred CCCc
Q 015509 134 DNSK 137 (405)
Q Consensus 134 Dp~k 137 (405)
.++.
T Consensus 109 ~~d~ 112 (462)
T 3tqo_A 109 LSPD 112 (462)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8754
No 52
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=95.17 E-value=0.016 Score=63.72 Aligned_cols=85 Identities=13% Similarity=0.108 Sum_probs=58.1
Q ss_pred EEE--eeCCCCcchhhhHHHHHHHHHHhc---------cCCCcChHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCch-h
Q 015509 81 IVS--GVQPTGSIHLGNYLGAIKNWIALQ---------ITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR-A 148 (405)
Q Consensus 81 i~s--Gi~PTG~lHLGnylg~i~~~~~lQ---------it~~~d~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~v~-~ 148 (405)
+.+ +=.|||.+||||...++-+|..-. |+-.++.....+....+..++..+||+++. .++.||+.. .
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~IledL~wLGl~wde-~~~~qSer~d~ 145 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGLDWGE-HFYYASDYFDR 145 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCTTTCCHHHHHHHHHHHHHHTCCCTT-CEEEGGGGHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCC-CcccHhhhHHH
Confidence 445 666779999999999988886543 444455555667788889999999999854 489999953 3
Q ss_pred hhHHHHH-------HhccccHHHHh
Q 015509 149 HVELMWL-------LSSATPIGWLN 166 (405)
Q Consensus 149 h~el~w~-------L~~~~~~~~l~ 166 (405)
+.+..-. +.|.++-.++.
T Consensus 146 y~e~a~~LI~~G~AY~c~ct~eel~ 170 (851)
T 2hz7_A 146 YYAYAEQLIRQGDAYVESVSPEELS 170 (851)
T ss_dssp HHHHHHHHHHTTSEEEECSCHHHHH
T ss_pred HHHHHHHHHHCCCcEeecCCHHHHH
Confidence 3332222 34666665553
No 53
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=94.98 E-value=0.015 Score=61.73 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=20.8
Q ss_pred eEEEeeCCCCcchhhhHHHHH-----HHHHHhc
Q 015509 80 RIVSGVQPTGSIHLGNYLGAI-----KNWIALQ 107 (405)
Q Consensus 80 ~i~sGi~PTG~lHLGnylg~i-----~~~~~lQ 107 (405)
.-|+|--|+|.+||||.-+++ .++.++.
T Consensus 107 ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~ 139 (592)
T 1iq0_A 107 VEHTSVNPNKELHVGHLRNIALGDAIARILAYA 139 (592)
T ss_dssp EECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHc
Confidence 346888899999999988744 5555554
No 54
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=92.54 E-value=0.11 Score=55.32 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=20.5
Q ss_pred EEeeCCCCcchhhhHHHHH-----HHHHHhc
Q 015509 82 VSGVQPTGSIHLGNYLGAI-----KNWIALQ 107 (405)
Q Consensus 82 ~sGi~PTG~lHLGnylg~i-----~~~~~lQ 107 (405)
|+|--|+|.+||||.-+++ .++.+++
T Consensus 125 ~~spN~~~~~HiGH~Rs~iigD~laR~l~~~ 155 (629)
T 2zue_A 125 HTSVNPTKPLHMGHARNAILGDVMARILRFL 155 (629)
T ss_dssp CCCCCTTSCCBHHHHHHHHHHHHHHHHHHHT
T ss_pred eeCCCCCCCCccchhHHHHHHHHHHHHHHHc
Confidence 6899999999999987643 5666655
No 55
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=91.03 E-value=0.14 Score=53.38 Aligned_cols=65 Identities=18% Similarity=0.207 Sum_probs=42.9
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHH-----HHHhc---------cCCCc--C----------------------------
Q 015509 78 KKRIVSGVQPTGSIHLGNYLGAIKN-----WIALQ---------ITLPY--D---------------------------- 113 (405)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnylg~i~~-----~~~lQ---------it~~~--d---------------------------- 113 (405)
..++.+|--|||.+||||.-.++.. |.+.. ++-.+ +
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 3556679999999999999887644 44333 22111 0
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCCceEEEEcCC
Q 015509 114 TQQLSKATRETAAIYLACGIDNSKASVFVQSH 145 (405)
Q Consensus 114 ~~~l~~~~~~~~~~~lA~GiDp~k~~if~qS~ 145 (405)
.+-..+.......++..+||+++ +|.||+
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D---~~~~se 129 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVD---LLYASE 129 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCE---EEEHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCce---EEechh
Confidence 01123456677788889999986 458998
No 56
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=86.82 E-value=1.2 Score=46.31 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=38.1
Q ss_pred CceEEEe-eCCCCcchhhhHHHHH-----HHHHHhc------c---CCC------------cChHH-HHHHHHHHHHHHH
Q 015509 78 KKRIVSG-VQPTGSIHLGNYLGAI-----KNWIALQ------I---TLP------------YDTQQ-LSKATRETAAIYL 129 (405)
Q Consensus 78 ~~~i~sG-i~PTG~lHLGnylg~i-----~~~~~lQ------i---t~~------------~d~~~-l~~~~~~~~~~~l 129 (405)
++.|.++ .-|||.+||||....+ ..|.+++ + +-. .+++. ..+.......++.
T Consensus 19 ~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 98 (560)
T 3h99_A 19 KILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFA 98 (560)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3444444 4455999999988754 3455554 1 111 12333 3444556677888
Q ss_pred HcCCCCCceEEEEcC
Q 015509 130 ACGIDNSKASVFVQS 144 (405)
Q Consensus 130 A~GiDp~k~~if~qS 144 (405)
++|++++. ++.-+
T Consensus 99 ~lgi~~d~--~~~t~ 111 (560)
T 3h99_A 99 GFNISYDN--YHSTH 111 (560)
T ss_dssp HTTCCCSE--EEESS
T ss_pred HcCCCCCC--ceeCC
Confidence 99999884 44444
No 57
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=86.31 E-value=2.1 Score=44.24 Aligned_cols=72 Identities=10% Similarity=0.120 Sum_probs=44.1
Q ss_pred CceEEEe-eCCCCcchhhhHHHHH-----HHHHHhc------cCC---------------CcChHH-HHHHHHHHHHHHH
Q 015509 78 KKRIVSG-VQPTGSIHLGNYLGAI-----KNWIALQ------ITL---------------PYDTQQ-LSKATRETAAIYL 129 (405)
Q Consensus 78 ~~~i~sG-i~PTG~lHLGnylg~i-----~~~~~lQ------it~---------------~~d~~~-l~~~~~~~~~~~l 129 (405)
++.|-|. --++|.+||||.++.+ ..|.+++ ++- .-++++ ..+++.....++.
T Consensus 10 ~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~ 89 (542)
T 3u1f_A 10 VFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFE 89 (542)
T ss_dssp CEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4455554 3578999999998754 4466666 110 112333 3555667778889
Q ss_pred HcCCCCCceEEEEcCCchhhhHH
Q 015509 130 ACGIDNSKASVFVQSHVRAHVEL 152 (405)
Q Consensus 130 A~GiDp~k~~if~qS~v~~h~el 152 (405)
++|++.|. |.-..-++|.+.
T Consensus 90 ~lgi~~D~---~~~T~~~~~~~~ 109 (542)
T 3u1f_A 90 QMDYSIDY---FIRTTNEQHKAV 109 (542)
T ss_dssp HHTCCCSE---EEETTCHHHHHH
T ss_pred HhCCccCc---CccCCCHHHHHH
Confidence 99999874 333444555544
No 58
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=84.68 E-value=0.26 Score=50.95 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=35.3
Q ss_pred CCCcchhhhHHHHH-----HHHHHhc------c---CCCc------------ChHH-HHHHHHHHHHHHHHcCCCCCceE
Q 015509 87 PTGSIHLGNYLGAI-----KNWIALQ------I---TLPY------------DTQQ-LSKATRETAAIYLACGIDNSKAS 139 (405)
Q Consensus 87 PTG~lHLGnylg~i-----~~~~~lQ------i---t~~~------------d~~~-l~~~~~~~~~~~lA~GiDp~k~~ 139 (405)
|+|.+||||....+ ..|.+++ + +-.+ ++.. ..++.....+++.++|++++ .
T Consensus 23 ~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d--~ 100 (524)
T 2x1l_A 23 PNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFD--R 100 (524)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCS--E
T ss_pred CCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC--C
Confidence 46999999988644 4455554 1 1111 2323 23455667778889999887 4
Q ss_pred EEEcCC
Q 015509 140 VFVQSH 145 (405)
Q Consensus 140 if~qS~ 145 (405)
++..++
T Consensus 101 ~~~t~~ 106 (524)
T 2x1l_A 101 FIRTSD 106 (524)
T ss_dssp EEETTS
T ss_pred CeecCC
Confidence 555665
No 59
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=83.78 E-value=3.4 Score=43.19 Aligned_cols=64 Identities=8% Similarity=0.114 Sum_probs=37.8
Q ss_pred eEEEee--CCCCcchhhhHHHHH-----HHHHHhc------c---CCC------------cChHH-HHHHHHHHHHHHHH
Q 015509 80 RIVSGV--QPTGSIHLGNYLGAI-----KNWIALQ------I---TLP------------YDTQQ-LSKATRETAAIYLA 130 (405)
Q Consensus 80 ~i~sGi--~PTG~lHLGnylg~i-----~~~~~lQ------i---t~~------------~d~~~-l~~~~~~~~~~~lA 130 (405)
.++++- -|||.+||||..+++ ..+.+++ + +-. .+++. +.+.......++..
T Consensus 28 ~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~ 107 (564)
T 3kfl_A 28 FFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQE 107 (564)
T ss_dssp EEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 344443 477999999988754 3444444 1 111 12333 34445566778889
Q ss_pred cCCCCCceEEEEcCC
Q 015509 131 CGIDNSKASVFVQSH 145 (405)
Q Consensus 131 ~GiDp~k~~if~qS~ 145 (405)
+|++.+. ++.-++
T Consensus 108 lgi~~D~--~~~t~~ 120 (564)
T 3kfl_A 108 MNYDMNY--FIRTTN 120 (564)
T ss_dssp TTCCCSE--EEETTS
T ss_pred cCCCCCc--cccCCC
Confidence 9999883 444443
No 60
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=83.59 E-value=0.33 Score=50.89 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=34.2
Q ss_pred cccceeccccchHHHHHH---HHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCC
Q 015509 201 YQSDFVPVGEDQKQHLEL---TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 277 (405)
Q Consensus 201 ~~adlVpvG~DQ~~hleL---tRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 277 (405)
+.+|+..+|.||...+.+ ++-.+ .| ++.|..++.. ..+ . .+| +|||||.
T Consensus 293 wp~dv~~~GkDii~FH~~~wpa~L~a------~g--------------~~~~~~v~~h--g~v-~-~~G-~KMSKS~--- 344 (564)
T 3kfl_A 293 WPADVHVVGKDILKFHAIYWPAFLMS------AE--------------LPLPERLVSH--GWW-T-KDH-KKISKSL--- 344 (564)
T ss_dssp CSCSEEEEEGGGHHHHHTHHHHHHHH------TT--------------CCCCSCEEEE--CCE-E-ETT-EECCTTT---
T ss_pred CccceEEEeecccchHHHHHHHHHHh------CC--------------CCCCcEEEEc--ccE-e-eCC-ccccccC---
Confidence 357899999999884322 22222 22 3455555543 245 3 367 6999997
Q ss_pred CceeecC
Q 015509 278 QSRINLL 284 (405)
Q Consensus 278 ~s~I~L~ 284 (405)
+|.|.+.
T Consensus 345 GNvV~p~ 351 (564)
T 3kfl_A 345 GNAFDPV 351 (564)
T ss_dssp TCCCCHH
T ss_pred CCCCCHH
Confidence 6788653
No 61
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=83.22 E-value=0.41 Score=49.58 Aligned_cols=53 Identities=21% Similarity=0.279 Sum_probs=31.3
Q ss_pred cceeccccchHHHHH---HHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCc
Q 015509 203 SDFVPVGEDQKQHLE---LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 279 (405)
Q Consensus 203 adlVpvG~DQ~~hle---LtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 279 (405)
+|+...|.||..++. .++-++. | ++.|..++.. ..+ .. +| +|||||. +|
T Consensus 279 ~d~~~~G~D~~~fh~~~~~a~l~~~------g--------------~~~~~~v~~h--g~l-~~-~G-~KMSKSl---GN 330 (542)
T 3u1f_A 279 ADVHVIGKDILKFHAIYWPAFLLSA------G--------------LPLPKKIVAH--GWW-TK-DR-KKISKSL---GN 330 (542)
T ss_dssp CSEEEEEGGGHHHHHTHHHHHHHHH------T--------------CCCCSCEEEE--CCC-EE-TT-BCCBTTT---TB
T ss_pred ceEEEecccccccccchhHHHHHhh------c--------------ccccceeccc--cce-ec-CC-ceecccc---CC
Confidence 688999999977542 2222221 2 3445555543 133 22 56 7999997 67
Q ss_pred eeec
Q 015509 280 RINL 283 (405)
Q Consensus 280 ~I~L 283 (405)
.|..
T Consensus 331 vi~p 334 (542)
T 3u1f_A 331 VFDP 334 (542)
T ss_dssp CCCH
T ss_pred CCCh
Confidence 7753
No 62
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=80.81 E-value=0.6 Score=50.99 Aligned_cols=60 Identities=23% Similarity=0.253 Sum_probs=34.5
Q ss_pred cccceeccccchHH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCc
Q 015509 201 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 279 (405)
Q Consensus 201 ~~adlVpvG~DQ~~-hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 279 (405)
+-+|+..+|.||.. |+...+-...-+ ++. .+.|..++.. .++.. +| +|||||. +|
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~---~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAI---FRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHH---SCG-------------GGSCCEEEEE--CCEEE--TT-BCCCTTT---TC
T ss_pred CCceEEeecccccccHHHHHHHHHHHH---cCc-------------cccccEEEEE--eEEEe--CC-eehhhcC---CC
Confidence 46899999999965 665543222211 221 1234444432 13332 56 6999997 67
Q ss_pred eeecC
Q 015509 280 RINLL 284 (405)
Q Consensus 280 ~I~L~ 284 (405)
.|.+.
T Consensus 658 vv~p~ 662 (810)
T 1wkb_A 658 VLNFI 662 (810)
T ss_dssp CCBHH
T ss_pred cCCHH
Confidence 88654
No 63
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=78.57 E-value=1 Score=46.08 Aligned_cols=78 Identities=23% Similarity=0.147 Sum_probs=42.3
Q ss_pred HhhhhhccccceeccccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcccc
Q 015509 194 MASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 272 (405)
Q Consensus 194 QAADIl~~~adlVpvG~DQ~-~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSK 272 (405)
|+...+--..|+..+|.|+. +|++. ++|...-. +| .+.|..+++. .++.- +| +||||
T Consensus 212 m~~~~lg~~~dih~gG~Dl~fpH~~~--~~aq~~a~-~g--------------~~~~~~~~h~--g~v~~--~G-~KMSK 269 (461)
T 1li5_A 212 MNCKQLGNHFDIHGGGSDLMFPHHEN--EIAQSTCA-HD--------------GQYVNYWMHS--GMVMV--DR-EKMSK 269 (461)
T ss_dssp HHHHHHCSSEEEEECBGGGTTTHHHH--HHHHHHHH-SS--------------SCCEEEECCB--CCEEE--TT-BCCCG
T ss_pred HHHHHhCCCceEEeccCccCchHHHH--HHHHHHHh-cC--------------CCCCcEEEEe--eEEEE--CC-eEccc
Confidence 33333333578999999986 45432 34433221 23 2334444432 13322 56 69999
Q ss_pred CCCCCCceeecCC-----CHHHHHHHhhc
Q 015509 273 SAPSDQSRINLLD-----PKDVIANKIKR 296 (405)
Q Consensus 273 S~p~~~s~I~L~D-----spe~I~kKI~k 296 (405)
|. +|.|.+.| .++.++-=+.+
T Consensus 270 S~---GN~v~~~dll~~~g~dalR~~ll~ 295 (461)
T 1li5_A 270 SL---GNFFTVRDVLKYYDAETVRYFLMS 295 (461)
T ss_dssp GG---TCCCBHHHHHTTSCHHHHHHHHHS
T ss_pred cC---CCccChhHHhhhCCHHHHHHHHHc
Confidence 97 57776543 45666655544
No 64
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=78.55 E-value=0.62 Score=51.49 Aligned_cols=60 Identities=28% Similarity=0.361 Sum_probs=36.5
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCccccCCCCCCc
Q 015509 201 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 279 (405)
Q Consensus 201 ~~adlVpvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 279 (405)
|-+|+...|.||.. +=.+|.++.-+. ..| ..| ..++.. ..+... +| +|||||. +|
T Consensus 480 ~P~d~~v~G~Dii~-~W~a~~~~~~~~-~~g---------------~~Pfk~v~~h--G~vld~-~G-~KMSKSl---GN 535 (862)
T 1gax_A 480 YPGDVLVTGYDILF-LWVSRMEVSGYH-FMG---------------ERPFKTVLLH--GLVLDE-KG-QKMSKSK---GN 535 (862)
T ss_dssp CSBSCEEEEGGGTT-TTHHHHHHHHHH-HSS---------------SCSBSEEEEE--CCEECT-TS-CBCCTTT---TC
T ss_pred CCceEEecCccccc-cHHHHHHHHHHH-hcC---------------CCcccEEEEe--eeEEcC-CC-CCccccC---CC
Confidence 56899999999874 445676765542 123 123 223322 255443 67 6999997 57
Q ss_pred eeecC
Q 015509 280 RINLL 284 (405)
Q Consensus 280 ~I~L~ 284 (405)
.|...
T Consensus 536 vIdP~ 540 (862)
T 1gax_A 536 VIDPL 540 (862)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 77543
No 65
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=78.35 E-value=4.6 Score=44.70 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=38.0
Q ss_pred CceEEEee-CCCCcchhhhHHHH-----HHHHHHhc---------cCCCc------------ChHH-HHHHHHHHHHHHH
Q 015509 78 KKRIVSGV-QPTGSIHLGNYLGA-----IKNWIALQ---------ITLPY------------DTQQ-LSKATRETAAIYL 129 (405)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylg~-----i~~~~~lQ---------it~~~------------d~~~-l~~~~~~~~~~~l 129 (405)
++.+++++ -|||.+||||..+. +..|.+++ ..-.+ ++.. ..+++..+...+.
T Consensus 54 ~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~ 133 (880)
T 4arc_A 54 KYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLK 133 (880)
T ss_dssp EEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46777776 66799999998874 35566666 11112 2222 2344566677888
Q ss_pred HcCCCCC
Q 015509 130 ACGIDNS 136 (405)
Q Consensus 130 A~GiDp~ 136 (405)
++|+..+
T Consensus 134 ~LGis~D 140 (880)
T 4arc_A 134 MLGFGYD 140 (880)
T ss_dssp HTTCCCC
T ss_pred HhCCCcC
Confidence 9998777
No 66
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=78.31 E-value=0.68 Score=46.64 Aligned_cols=64 Identities=16% Similarity=0.080 Sum_probs=38.4
Q ss_pred eEEEeeCCCCcchhhhHHHHH-----HHHHHhc---------cCCCcC------------hHH-HHHHHHHHHHHHHHcC
Q 015509 80 RIVSGVQPTGSIHLGNYLGAI-----KNWIALQ---------ITLPYD------------TQQ-LSKATRETAAIYLACG 132 (405)
Q Consensus 80 ~i~sGi~PTG~lHLGnylg~i-----~~~~~lQ---------it~~~d------------~~~-l~~~~~~~~~~~lA~G 132 (405)
..++|.=|.|.+||||....+ ..+.+++ ++-.++ +.. ..++.....+++.++|
T Consensus 42 ~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lg 121 (414)
T 3c8z_A 42 MYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALR 121 (414)
T ss_dssp EEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 345666667999999988754 4455554 222222 222 2344556677888999
Q ss_pred CC-CCceEEEEcCC
Q 015509 133 ID-NSKASVFVQSH 145 (405)
Q Consensus 133 iD-p~k~~if~qS~ 145 (405)
+. ++ .++..|+
T Consensus 122 i~~~d--~~~r~t~ 133 (414)
T 3c8z_A 122 VLPPH--DYVAATD 133 (414)
T ss_dssp CCCCS--EEEEGGG
T ss_pred CCCCc--ceecccc
Confidence 98 66 3445554
No 67
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=78.12 E-value=0.83 Score=51.07 Aligned_cols=71 Identities=25% Similarity=0.263 Sum_probs=39.4
Q ss_pred cccceeccccchHH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCc
Q 015509 201 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 279 (405)
Q Consensus 201 ~~adlVpvG~DQ~~-hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 279 (405)
+-+|+...|.||.. |+...+-...- .++. .+.|..++.. .++.. +| +|||||. +|
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a---~~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVA---IFRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHH---HSCS-------------TTSCCCEEEE--CCEEE--SS-SCCCTTT---CC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHH---HcCc-------------ccccceEEEe--eEEee--CC-EEccccc---cC
Confidence 45899999999964 65554322211 1221 1224444433 13332 66 6999997 67
Q ss_pred eeecCC-----CHHHHHHHhh
Q 015509 280 RINLLD-----PKDVIANKIK 295 (405)
Q Consensus 280 ~I~L~D-----spe~I~kKI~ 295 (405)
.|...| .+|.++==+.
T Consensus 658 vv~p~d~i~~yGaDalR~~ll 678 (967)
T 1wz2_A 658 VLNFIDAIEENGADVVRLYIM 678 (967)
T ss_dssp CCBHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHhChHHHHHHHH
Confidence 886542 3555555453
No 68
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=77.43 E-value=1 Score=50.14 Aligned_cols=58 Identities=31% Similarity=0.313 Sum_probs=34.2
Q ss_pred ccccceeccccchH---HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCccccCCC
Q 015509 200 LYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAP 275 (405)
Q Consensus 200 ~~~adlVpvG~DQ~---~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p 275 (405)
.+-+|+...|.||. .|-.+...++ + .| ..| ..++.. .++... +| +|||||.
T Consensus 546 ~~P~Dl~~~G~D~~r~wf~~~l~~s~~--~---~g---------------~~Pfk~v~~h--G~V~d~-~G-~KMSKSl- 600 (917)
T 1ffy_A 546 SFPADMYLEGSDQYRGWFNSSITTSVA--T---RG---------------VSPYKFLLSH--GFVMDG-EG-KKMSKSL- 600 (917)
T ss_dssp CSSBSEEEEEGGGGTTHHHHHHHHHHH--H---HS---------------SCSBSEEEEE--CCEECT-TS-CCCCSSS-
T ss_pred CCCceEEEEEecccccHHHHHHHHHHH--h---hC---------------CCcccceeEe--eeEEcC-CC-cCccccc-
Confidence 35689999999997 3444555544 1 22 112 223322 245443 56 6999997
Q ss_pred CCCceeecC
Q 015509 276 SDQSRINLL 284 (405)
Q Consensus 276 ~~~s~I~L~ 284 (405)
+|.|...
T Consensus 601 --GNvV~P~ 607 (917)
T 1ffy_A 601 --GNVIVPD 607 (917)
T ss_dssp --SCCCCHH
T ss_pred --CCcCChH
Confidence 6788543
No 69
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=77.42 E-value=4.7 Score=43.49 Aligned_cols=60 Identities=15% Similarity=0.275 Sum_probs=38.0
Q ss_pred CceEEEee-CCCCcchhhhHHH-HH-----HHHHHhc------c---CCC------------cChHH-HHHHHHHHHHHH
Q 015509 78 KKRIVSGV-QPTGSIHLGNYLG-AI-----KNWIALQ------I---TLP------------YDTQQ-LSKATRETAAIY 128 (405)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylg-~i-----~~~~~lQ------i---t~~------------~d~~~-l~~~~~~~~~~~ 128 (405)
++.|.+++ -|+|.+||||..+ .+ ..|.+++ + +-. -+++. ..++......+|
T Consensus 3 ~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~ 82 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITF 82 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45666665 5679999999987 33 3455555 1 111 13333 344556677888
Q ss_pred HHcCCCCCc
Q 015509 129 LACGIDNSK 137 (405)
Q Consensus 129 lA~GiDp~k 137 (405)
.++|++.+.
T Consensus 83 ~~lgis~D~ 91 (722)
T 1rqg_A 83 QRAKISFDF 91 (722)
T ss_dssp HHHTCCCSE
T ss_pred HHhCCCCCC
Confidence 899999885
No 70
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=76.02 E-value=0.39 Score=49.44 Aligned_cols=61 Identities=28% Similarity=0.178 Sum_probs=32.6
Q ss_pred ccee--ccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCC-CccccCCCCCCc
Q 015509 203 SDFV--PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQS 279 (405)
Q Consensus 203 adlV--pvG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~-~KMSKS~p~~~s 279 (405)
.|.+ .+|.||..|+.--..+++.++ +..|..-+... .++.-..||+ .|||||. ++
T Consensus 235 ~d~~Iyv~G~dq~~~f~~l~~~l~~lG------------------~~~~~~~h~~~-g~V~l~~dG~~~KMSKr~---Gn 292 (464)
T 3fnr_A 235 YGKCINIWGADHHGYIPRMKAAMEFLG------------------FDSNNLEIILA-QMVSLLKDGEPYKMSKRA---GN 292 (464)
T ss_dssp CSEEEEEEEGGGGGGHHHHHHHHHTTT------------------CCGGGEEEEEE-CCEEEEETTEECCC---C---CS
T ss_pred CCeEEEEecCcHHHHHHHHHHHHHHcC------------------CCccceEEEEe-eeEEecCCCcccCCcCcC---CC
Confidence 5544 799999999987777766643 22222111111 1331113563 5999997 67
Q ss_pred eeecCC
Q 015509 280 RINLLD 285 (405)
Q Consensus 280 ~I~L~D 285 (405)
.|.+.|
T Consensus 293 ~v~l~d 298 (464)
T 3fnr_A 293 FILMSD 298 (464)
T ss_dssp SCBHHH
T ss_pred CCCHHH
Confidence 887654
No 71
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=75.60 E-value=1.2 Score=48.88 Aligned_cols=72 Identities=24% Similarity=0.335 Sum_probs=37.2
Q ss_pred cccceeccccchHH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCc
Q 015509 201 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 279 (405)
Q Consensus 201 ~~adlVpvG~DQ~~-hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 279 (405)
+-+|+...|.||.. |+.....++.-+ +|. +.+..++.. ..+... +| +|||||. +|
T Consensus 543 ~P~dl~~~G~D~~r~w~~~~~~~~~~~---~~~--------------~pf~~v~~h--g~vl~~-~G-~KMSKS~---GN 598 (821)
T 1ile_A 543 FPADFIAEGIDQTRGWFNSLHQLGVML---FGS--------------IAFKNVICH--GLILDE-KG-QKMSKSK---GN 598 (821)
T ss_dssp SSBSBEEEEGGGGGTHHHHHHHHHHHH---HSS--------------CSBSEEEEE--CCEECT-TS-SCCCTTT---TC
T ss_pred CCcccccchhhhhccHHHHHHHHHHHh---cCC--------------CCcceEEEE--eeEECC-CC-CCCCccC---CC
Confidence 45899999999963 432222222221 221 122333322 244443 66 6999997 57
Q ss_pred eeecCC-----CHHHHHHHhhc
Q 015509 280 RINLLD-----PKDVIANKIKR 296 (405)
Q Consensus 280 ~I~L~D-----spe~I~kKI~k 296 (405)
.|.+.| .+|.++==+..
T Consensus 599 vV~p~dli~~yGaDalR~~ll~ 620 (821)
T 1ile_A 599 VVDPWDIIRKFGADALRWYIYV 620 (821)
T ss_dssp CCCHHHHHTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCHHHHHHHHHh
Confidence 776432 34455444443
No 72
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=72.89 E-value=1.2 Score=46.47 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=23.6
Q ss_pred ccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCC-----CHHHHHHHhhc
Q 015509 246 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKR 296 (405)
Q Consensus 246 f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D-----spe~I~kKI~k 296 (405)
++.|..++.. ..+. + +| +|||||. +|.|.+.| .+|.++--+.+
T Consensus 327 ~~~p~~v~~h--g~v~-~-~G-~KMSKS~---GNvv~p~d~i~~~GaDalR~~ll~ 374 (560)
T 3h99_A 327 FRKPSNLFVH--GYVT-V-NG-AKMSKSR---GTFIKASTWLNHFDADSLRYYYTA 374 (560)
T ss_dssp BCCCSEEEEE--CCEE-E-TT-EECCTTT---TCCCBHHHHHHHSCHHHHHHHHHH
T ss_pred CCCCcEEEEE--eEEE-e-CC-eeccccC---CCcCCHHHHHHHcCcHHHHHHHHH
Confidence 4556544432 1332 2 66 6999997 67776533 34444444444
No 73
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=72.42 E-value=6.3 Score=40.46 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=11.9
Q ss_pred cccceeccccchHH
Q 015509 201 YQSDFVPVGEDQKQ 214 (405)
Q Consensus 201 ~~adlVpvG~DQ~~ 214 (405)
+.+|+..+|.||..
T Consensus 264 ~p~di~~~G~D~~~ 277 (524)
T 2x1l_A 264 WPADLHMIGKDIIR 277 (524)
T ss_dssp CSCSEEEEEGGGHH
T ss_pred CCCeEEEEeechhH
Confidence 35899999999985
No 74
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=72.06 E-value=11 Score=37.67 Aligned_cols=30 Identities=23% Similarity=0.085 Sum_probs=19.4
Q ss_pred HhhhhhccccceeccccchHH-HHHHHHHHH
Q 015509 194 MASDILLYQSDFVPVGEDQKQ-HLELTRELA 223 (405)
Q Consensus 194 QAADIl~~~adlVpvG~DQ~~-hleLtRdia 223 (405)
|+...+-...|+.++|.|+.. |++...-..
T Consensus 236 ~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~ 266 (414)
T 3c8z_A 236 IALTRIGTGLDIQGGGSDLIFPHHEYSAAHA 266 (414)
T ss_dssp HHHHHTCSCEEEEEEEGGGTTTHHHHHHHHH
T ss_pred HHHHhcCCCceEEEeccccccHHHHHHHHHH
Confidence 344444335789999999877 776554333
No 75
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=63.04 E-value=2.2 Score=44.16 Aligned_cols=71 Identities=27% Similarity=0.357 Sum_probs=33.8
Q ss_pred cccceeccccchHH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCC-CCCCccccCCCC
Q 015509 201 YQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT-DGLSKMSKSAPS 276 (405)
Q Consensus 201 ~~adlVpvG~DQ~~---hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~-dg~~KMSKS~p~ 276 (405)
+..++-++|.|+.. ......+++.. .+| .+.|..++.+ +|.. . +| +|||||.
T Consensus 229 l~~~vd~~G~Dh~~~h~s~~~~~~i~~~---alG--------------~~~p~~~h~~---~i~~-~g~g-~KmSKs~-- 284 (523)
T 1irx_A 229 FGVDFEPAGKDHLVAGSSYDTGKEIIKE---VYG--------------KEAPLSLMYE---FVGI-KGQK-GKMSGSK-- 284 (523)
T ss_dssp SCCCBCCEEHHHHSTTSHHHHHHHHHHH---HHC--------------CCCCBCCEEC---CEEE-SCC-----------
T ss_pred cCCCCcCCCcCccCCCcchhhHHHHHHH---HhC--------------CCCCeEEEEE---EEEe-CCCC-CCCCCcC--
Confidence 34555588999877 12234566632 344 3456544433 4433 2 35 6999997
Q ss_pred CCceeecCC-----CHHHHHHHhhc
Q 015509 277 DQSRINLLD-----PKDVIANKIKR 296 (405)
Q Consensus 277 ~~s~I~L~D-----spe~I~kKI~k 296 (405)
+|.|.+.| .|+.++.-+.+
T Consensus 285 -Gn~i~~~~~~~~~~pdalR~~l~~ 308 (523)
T 1irx_A 285 -GNVILLSDLYEVLEPGLVRFIYAR 308 (523)
T ss_dssp --CCCCHHHHHTTSCHHHHHHHHHS
T ss_pred -CCCCCHHHHHHHcCHHHHHHHHHh
Confidence 45664432 57777777765
No 76
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=60.56 E-value=3.2 Score=43.12 Aligned_cols=60 Identities=17% Similarity=0.049 Sum_probs=36.1
Q ss_pred CceEE-EeeCCCCcchhhhHHHHH-----HHHHHhc---------cCCC----------cC------------hHH-HHH
Q 015509 78 KKRIV-SGVQPTGSIHLGNYLGAI-----KNWIALQ---------ITLP----------YD------------TQQ-LSK 119 (405)
Q Consensus 78 ~~~i~-sGi~PTG~lHLGnylg~i-----~~~~~lQ---------it~~----------~d------------~~~-l~~ 119 (405)
+.++| +|-=|.|.+||||....+ ..|.+++ +|-. ++ +.. ..+
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~ 121 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEF 121 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHH
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHH
Confidence 34444 675556999999987643 4555554 3322 11 111 234
Q ss_pred HHHHHHHHHHHcCCCCCc
Q 015509 120 ATRETAAIYLACGIDNSK 137 (405)
Q Consensus 120 ~~~~~~~~~lA~GiDp~k 137 (405)
++.....++.++|+.++.
T Consensus 122 ~~~~f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 122 FTEAFFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 455667788899998775
No 77
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=60.05 E-value=4.1 Score=45.08 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=19.5
Q ss_pred cccceeccccch-HHHHHHHHHHHHH
Q 015509 201 YQSDFVPVGEDQ-KQHLELTRELAER 225 (405)
Q Consensus 201 ~~adlVpvG~DQ-~~hleLtRdia~r 225 (405)
+-+|+...|.|| .-|+-.+|-+..-
T Consensus 530 ~P~D~yi~G~d~~ilhl~y~r~~~~~ 555 (878)
T 2v0c_A 530 MPVDQYIGGVEHAVLHLLYSRFFTKF 555 (878)
T ss_dssp CSBSEEECCGGGTTTHHHHHHHHHHH
T ss_pred CCCeEEEechHHHHHHHHHHHHHHHH
Confidence 469999999999 6777777766543
No 78
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=57.30 E-value=15 Score=40.55 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=36.1
Q ss_pred CceEEEee-CCCCcchhhhHHHHH-----HHHHHhc---------cCCCc------------ChHH-HHHHHHHHHHHHH
Q 015509 78 KKRIVSGV-QPTGSIHLGNYLGAI-----KNWIALQ---------ITLPY------------DTQQ-LSKATRETAAIYL 129 (405)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylg~i-----~~~~~lQ---------it~~~------------d~~~-l~~~~~~~~~~~l 129 (405)
++.+++|+ -|+|.+||||..+.+ ..|.+++ .+-.+ ++.. ..+++..+..++.
T Consensus 34 k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~ 113 (878)
T 2v0c_A 34 KQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLR 113 (878)
T ss_dssp EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46777773 445999999998743 4465665 11112 2222 3445566677888
Q ss_pred HcCCCCC
Q 015509 130 ACGIDNS 136 (405)
Q Consensus 130 A~GiDp~ 136 (405)
.+|+..+
T Consensus 114 ~LGi~~D 120 (878)
T 2v0c_A 114 LMGILYD 120 (878)
T ss_dssp HTTCCCC
T ss_pred HhCCccC
Confidence 8998665
No 79
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=56.04 E-value=2.7 Score=43.05 Aligned_cols=14 Identities=14% Similarity=0.026 Sum_probs=4.2
Q ss_pred eeccccchHHHHHH
Q 015509 205 FVPVGEDQKQHLEL 218 (405)
Q Consensus 205 lVpvG~DQ~~hleL 218 (405)
+||||.||++|.|-
T Consensus 236 ~vp~~~d~~~~~~~ 249 (451)
T 3foc_A 236 RVPLPVGTGNEDAA 249 (451)
T ss_dssp CCBCC---------
T ss_pred ccccccccccchhh
Confidence 47999999999544
No 80
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=54.53 E-value=7.5 Score=43.02 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=20.3
Q ss_pred cccceeccccch-HHHHHHHHHHHHHH
Q 015509 201 YQSDFVPVGEDQ-KQHLELTRELAERV 226 (405)
Q Consensus 201 ~~adlVpvG~DQ-~~hleLtRdia~r~ 226 (405)
+-+|+-.+|.|| .-|+-.+|-....+
T Consensus 542 ~PvD~yigG~EHailHllyaRf~~~~L 568 (880)
T 4arc_A 542 LPVDIYIGGIEHAIMHLLYFRFFHKLM 568 (880)
T ss_dssp CSEEEEECCGGGTTTHHHHHHHHHHHH
T ss_pred CCceEeecchhhHHHHHHHHHHHHHHH
Confidence 568999999999 56888888665444
No 81
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=48.69 E-value=37 Score=35.05 Aligned_cols=30 Identities=17% Similarity=0.028 Sum_probs=19.7
Q ss_pred HHhhhhhccccceeccccch-HHHHHHHHHH
Q 015509 193 LMASDILLYQSDFVPVGEDQ-KQHLELTREL 222 (405)
Q Consensus 193 LQAADIl~~~adlVpvG~DQ-~~hleLtRdi 222 (405)
-|+...|--..|+-.+|.|. .+|++--.-.
T Consensus 244 am~~~~lg~~~DIH~gG~DLifpHheneiAq 274 (501)
T 3sp1_A 244 AMNLEYFKDALDIHLGGVDHIGVHHINEIAI 274 (501)
T ss_dssp HHHHHHTTTCCCEEEEEGGGTTTHHHHHHHH
T ss_pred HHHHHHcCCCceEEeeccccccchHHHHHHH
Confidence 34555554467999999996 5677654333
No 82
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=44.11 E-value=35 Score=34.64 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=37.0
Q ss_pred ceEE-EeeCCCCcchhhhHHHHH-----HHHHHhc---------cCCCcC------------hHH-HHHHHHHHHHHHHH
Q 015509 79 KRIV-SGVQPTGSIHLGNYLGAI-----KNWIALQ---------ITLPYD------------TQQ-LSKATRETAAIYLA 130 (405)
Q Consensus 79 ~~i~-sGi~PTG~lHLGnylg~i-----~~~~~lQ---------it~~~d------------~~~-l~~~~~~~~~~~lA 130 (405)
.++| +|--|.|.+||||.-.++ ..|.++. +|-.++ ++. ..+......+++.+
T Consensus 23 v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~ 102 (461)
T 1li5_A 23 VGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDA 102 (461)
T ss_dssp EEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3444 554455999999987654 4454443 232221 222 23444566778889
Q ss_pred cCCCCCceEEEEcCC
Q 015509 131 CGIDNSKASVFVQSH 145 (405)
Q Consensus 131 ~GiDp~k~~if~qS~ 145 (405)
+|+.+.. .+..+|+
T Consensus 103 LgI~~~d-~~~r~t~ 116 (461)
T 1li5_A 103 LNILRPD-MEPRATH 116 (461)
T ss_dssp TTCCCCS-BCCBGGG
T ss_pred cCCCCCc-ccccccc
Confidence 9998522 2345554
No 83
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=34.85 E-value=15 Score=40.03 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=22.0
Q ss_pred CceEEEee-CCCCcchhhhHHHHH-----HHHHHhc
Q 015509 78 KKRIVSGV-QPTGSIHLGNYLGAI-----KNWIALQ 107 (405)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylg~i-----~~~~~lQ 107 (405)
++.+++|. -|||.+||||.++.+ ..|.+++
T Consensus 39 ~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~ 74 (821)
T 1ile_A 39 RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMR 74 (821)
T ss_dssp BCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHT
T ss_pred cEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhc
Confidence 46677776 678999999998743 4466666
No 84
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=34.55 E-value=17 Score=40.13 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=20.9
Q ss_pred CceEEEee-CCCCcchhhhHHHHH-----HHHHHhc
Q 015509 78 KKRIVSGV-QPTGSIHLGNYLGAI-----KNWIALQ 107 (405)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylg~i-----~~~~~lQ 107 (405)
++.|++|. -|||.||+||.+..+ ..|.++|
T Consensus 35 ~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~ 70 (862)
T 1gax_A 35 PFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMR 70 (862)
T ss_dssp EEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhC
Confidence 46666663 468999999998633 4466666
No 85
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=33.49 E-value=18 Score=40.18 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=22.2
Q ss_pred CceEEEee-CCCCcchhhhHHHHH-----HHHHHhc
Q 015509 78 KKRIVSGV-QPTGSIHLGNYLGAI-----KNWIALQ 107 (405)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylg~i-----~~~~~lQ 107 (405)
++.+.+|. -|||.+||||.+..+ ..|.+++
T Consensus 49 ~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~ 84 (917)
T 1ffy_A 49 TFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQ 84 (917)
T ss_dssp BCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhC
Confidence 57777777 568999999998743 4466666
No 86
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=33.22 E-value=17 Score=39.49 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=18.8
Q ss_pred ceEEEee-CCCCcchhhhHHHHH-----HHHHHhc
Q 015509 79 KRIVSGV-QPTGSIHLGNYLGAI-----KNWIALQ 107 (405)
Q Consensus 79 ~~i~sGi-~PTG~lHLGnylg~i-----~~~~~lQ 107 (405)
+.|.+|. -|||.+||||.++.+ ..|.+++
T Consensus 36 ~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~ 70 (810)
T 1wkb_A 36 FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQ 70 (810)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcC
Confidence 4444443 346999999998743 4455555
No 87
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=32.49 E-value=19 Score=40.13 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=21.6
Q ss_pred CceEEEee-CCCCcchhhhHHHH-----HHHHHHhc
Q 015509 78 KKRIVSGV-QPTGSIHLGNYLGA-----IKNWIALQ 107 (405)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnylg~-----i~~~~~lQ 107 (405)
++.++.|. -|||.||+||.+.. +..|.++|
T Consensus 35 kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~ 70 (967)
T 1wz2_A 35 KFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQ 70 (967)
T ss_dssp CCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcC
Confidence 57777776 35799999999873 34466666
No 88
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=32.37 E-value=8.5 Score=41.51 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=27.2
Q ss_pred ccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCC-----CHHHHHHHhhcc
Q 015509 246 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKRC 297 (405)
Q Consensus 246 f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D-----spe~I~kKI~kA 297 (405)
++.|..++.. ..+.. +| +|||||. +|.|...| .+|.++=-+...
T Consensus 326 ~~~Pk~v~~h--G~v~~--~G-~KMSKS~---GNvV~p~d~i~~ygaDalR~~ll~~ 374 (722)
T 1rqg_A 326 WNLPYDIPAN--EYLTL--EG-KKFSTSR---NWAIWVHEFLDVFPADYLRYYLTTI 374 (722)
T ss_dssp BCCCSBCCEE--CCEEE--TT-EECBTTT---TBSCBHHHHTTTSCHHHHHHHHHHT
T ss_pred CCCCCEEEEe--eeEEe--CC-eeeeeeC---CCcCCHHHHHHhcCchHHHHHHHhc
Confidence 4567655543 23332 66 6999997 67887542 467777666554
No 89
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=29.36 E-value=20 Score=37.96 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred cccceec--cccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCC
Q 015509 201 YQSDFVP--VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 278 (405)
Q Consensus 201 ~~adlVp--vG~DQ~~hleLtRdia~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 278 (405)
++.|.+. +|.||..|+.-...+++.++ ++.+..+. +.-.|+-+ ||||+. +
T Consensus 362 ~~~d~~IyV~g~~q~~~f~q~~~~~~~lG------------------~~~~~~~~----Hv~fg~v~---kMSkR~---G 413 (607)
T 1f7u_A 362 YHFDKMIYVIASQQDLHAAQFFEILKQMG------------------FEWAKDLQ----HVNFGMVQ---GMSTRK---G 413 (607)
T ss_dssp HCCSEEEEECCGGGHHHHHHHHHHHHHTT------------------CGGGGGEE----EECCCCEE---SCCGGG---T
T ss_pred cCCCcEEEEEcChHhhHHHHHHHHHHHcC------------------CCcCcEEE----Eecccccc---cccCCC---C
Q ss_pred ceeecCC
Q 015509 279 SRINLLD 285 (405)
Q Consensus 279 s~I~L~D 285 (405)
+.|.|.|
T Consensus 414 ~~v~L~d 420 (607)
T 1f7u_A 414 TVVFLDN 420 (607)
T ss_dssp CCCBHHH
T ss_pred CcccHHH
No 90
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=23.29 E-value=75 Score=25.89 Aligned_cols=40 Identities=13% Similarity=0.088 Sum_probs=29.7
Q ss_pred CCCccchHHHHHHhhCCCCHHHHHHHHhcCCcchHHHHHHHH
Q 015509 311 ERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDA 352 (405)
Q Consensus 311 ~rpev~nll~i~~~~t~~~~eel~~~y~~~~~gdlK~~Lae~ 352 (405)
.|..+..+++++. .+.+.+||.++|-++...++..+|+-+
T Consensus 50 TRI~V~~Il~~l~--~G~s~eeIl~~yP~Lt~edI~aAL~Ya 89 (106)
T 2ga1_A 50 TRIPVWTLVAYRQ--QGAPDKELLANYPGLTAEDLSAAWHYY 89 (106)
T ss_dssp SCCBHHHHHHHHH--TTCCHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred ceeeHHHHHHHHH--cCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3455556665544 689999999999888888887776644
Done!