RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 015509
(405 letters)
>gnl|CDD|215478 PLN02886, PLN02886, aminoacyl-tRNA ligase.
Length = 389
Score = 704 bits (1819), Expect = 0.0
Identities = 285/393 (72%), Positives = 311/393 (79%), Gaps = 20/393 (5%)
Query: 27 SRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQ 86
S G + PG + + A+ C C + + P + KKR+VSGVQ
Sbjct: 1 SSLGSLGRLLSKPGPLSGS---ASSASC---CSAATAATAPEKEAPPKVARKKRVVSGVQ 54
Query: 87 PTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRETAAIYLACG 132
PTGSIHLGNYLGAIKNW+ALQ ITLP+D ++L KATR TAAIYLACG
Sbjct: 55 PTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACG 114
Query: 133 IDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPV 192
ID SKASVFVQSHV AH ELMWLLS +TPIGWLNKMIQFKEKS KAG ENVGV LLTYPV
Sbjct: 115 IDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPV 174
Query: 193 LMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPL 252
LMASDILLYQ+D VPVGEDQKQHLELTR++AERVN LYGGRKWKKLGGRGG++FKVPE L
Sbjct: 175 LMASDILLYQADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEAL 234
Query: 253 IPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLER 312
IPPAGARVMSLTDG SKMSKSAPSDQSRINLLDP DVIANKIKRCKTDS GLEFDN ER
Sbjct: 235 IPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIANKIKRCKTDSFPGLEFDNPER 294
Query: 313 PECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSA 372
PECNNLLSIYQL++GKTK EV EC +M WG FKPLLTDALIEHL PIQVRYEEIMSD +
Sbjct: 295 PECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDALIEHLSPIQVRYEEIMSDPS 354
Query: 373 YLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
YLD VL +GA AA+IAD TL NVYQAMGF++R
Sbjct: 355 YLDSVLKEGADAAAEIADRTLANVYQAMGFVQR 387
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.
Length = 333
Score = 505 bits (1304), Expect = 0.0
Identities = 179/346 (51%), Positives = 230/346 (66%), Gaps = 31/346 (8%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRE 123
KKR++SG+QPTG +HLGNYLGAIKNW+ LQ +T+P D ++L + TRE
Sbjct: 1 KKRVLSGIQPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRE 60
Query: 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 183
AA YLACGID K+++FVQSHV H EL W+L+ TP+G L +M QFK+KS K ENV
Sbjct: 61 LAADYLACGIDPEKSTIFVQSHVPEHAELAWILNCITPLGELERMTQFKDKSAK-QKENV 119
Query: 184 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 243
L TYPVLMA+DILLY++D VPVGEDQKQHLELTR++A R N LYG
Sbjct: 120 SAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIARRFNNLYGE----------- 168
Query: 244 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS-- 301
+F VPEPLIP GARVM L KMSKS P+D + INLLD IA KIK+ TDS
Sbjct: 169 -VFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSER 227
Query: 302 SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMN--WGTFKPLLTDALIEHLHP 359
+ +D +PE +NLL+IY +SG++ E+ E + +G FK L +A++E L P
Sbjct: 228 LREIRYDLPNKPEVSNLLTIYSALSGESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAP 287
Query: 360 IQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
I+ RYEE+++D AYLD++LA+GA KA +A TL V +AMG LR+
Sbjct: 288 IRERYEELLADPAYLDEILAEGAEKARAVASKTLKEVREAMGLLRK 333
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 314
Score = 370 bits (953), Expect = e-128
Identities = 150/327 (45%), Positives = 191/327 (58%), Gaps = 37/327 (11%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITLPYDT--QQLSKA 120
K R++SG+QP+G +HLGNYLGAI+NW+ LQ IT+ D + L +A
Sbjct: 5 KFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQA 64
Query: 121 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 180
TRE AA YLA G+D K+++F+QS V H EL WLLS T G L +M QFK+KS K G
Sbjct: 65 TREVAADYLAVGLDPEKSTIFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG- 123
Query: 181 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 240
E++ + LLTYPVL A+DILLYQ+ VPVGEDQ QHLELTR++A R N+LYG
Sbjct: 124 ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLELTRDIARRFNHLYGE-------- 175
Query: 241 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 300
+F +PE LI AR+ L DG KMSKS P+ S I LLD I KIK+ TD
Sbjct: 176 ----VFPLPEALISKV-ARLPGL-DGPGKMSKSDPN--SAIFLLDDPKTIRKKIKKAATD 227
Query: 301 SSAGLEFDNLERPECNNLLSIYQLIS-GKTKGEVAEECQN--MNWGTFKPLLTDALIEHL 357
+E+ +PE NL IY + E+ E + + G K L +A+ E L
Sbjct: 228 GPTLIEYRKGGKPEVCNLFEIYSAFFEDDSILEIEAEYRGGELGCGECKKELAEAIQEFL 287
Query: 358 HPIQVRYEEIMSDSAYLDKVLADGAAK 384
PIQ R EE+ D AYLD +L GA K
Sbjct: 288 KPIQERREELREDPAYLDDILRKGAEK 314
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase. This model
represents tryptophanyl-tRNA synthetase. Some members of
the family have a pfam00458 domain amino-terminal to the
region described by this model [Protein synthesis, tRNA
aminoacylation].
Length = 327
Score = 323 bits (831), Expect = e-109
Identities = 145/347 (41%), Positives = 185/347 (53%), Gaps = 43/347 (12%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLP-YDTQQLSKATR 122
K R+++G+QP+G +HLG+YLGAI+ Q IT+ D L KA
Sbjct: 2 KFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKQTDPDALRKARE 61
Query: 123 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 182
E AA YLA G+D K +F+QS H EL WLLS G L +M QFK+KS EN
Sbjct: 62 ELAADYLAVGLDPEKTFIFLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQA---EN 118
Query: 183 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 242
V + LL+YPVL A+DILLYQ+D VPVG DQ QHLELTR+LAER N +
Sbjct: 119 VPIGLLSYPVLQAADILLYQADLVPVGIDQDQHLELTRDLAERFNKKF------------ 166
Query: 243 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 302
F PE LI R+M L+ KMSKS P+ S I L D I KI++ TD
Sbjct: 167 KNFFPKPESLISKFFPRLMGLSG--KKMSKSDPN--SAIFLTDTPKQIKKKIRKAATDGG 222
Query: 303 AGLEFDNLERPECNNLLSIYQLISGKTK-----GEVAEECQN--MNWGTFKPLLTDALIE 355
F++ E+P NLL IYQ +S E+ E ++ + +G K L + L E
Sbjct: 223 RVTLFEHREKPGVPNLLVIYQYLSFFLIDDDKLKEIYEAYKSGKLGYGECKKALIEVLQE 282
Query: 356 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 402
L IQ R EI LDK+L GA KA + A+ TL +VY+AMG
Sbjct: 283 FLKEIQERRAEI--AEEILDKILEPGAKKARETANKTLADVYKAMGL 327
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA
synthetase. Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. TrpRS is a homodimer which
attaches Tyr to the appropriate tRNA. TrpRS is a class I
tRNA synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains class I characteristic
HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 280
Score = 319 bits (821), Expect = e-108
Identities = 118/297 (39%), Positives = 156/297 (52%), Gaps = 37/297 (12%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQ----------------ITLPYDTQQLSKATRE 123
R++SG+QP+GS+HLG+YLGA + W+ LQ D ++L + TRE
Sbjct: 1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRE 60
Query: 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 183
A YLACG+D K+++F QS V H EL WLLS G L +M FK+KS A GE+V
Sbjct: 61 NAKDYLACGLDPEKSTIFFQSDVPEHYELAWLLSCVVTFGELERMTGFKDKS--AQGESV 118
Query: 184 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 243
+ LLTYPVL A+DILLY++ VPVG DQ HLELTR++A R N LYG
Sbjct: 119 NIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIARRFNKLYGE----------- 167
Query: 244 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 303
IF P L+ GA + L KMSKS P+ + I L D I KI + TD
Sbjct: 168 -IFPKPAALLSK-GAFLPGLQGPSKKMSKSDPN--NAIFLTDSPKEIKKKIMKAATDGGR 223
Query: 304 GLEFDNLERPECNNLLSIYQLISGKTKGEVAE--ECQ--NMNWGTFKPLLTDALIEH 356
+ P +NL+ IY E+ E E + + +G K LL +A+ E
Sbjct: 224 TEHRRDGGGPGVSNLVEIYSAFFNDDDEELEEIDEYRSGGLGYGECKKLLAEAIQEF 280
>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y).
Length = 291
Score = 239 bits (612), Expect = 7e-77
Identities = 89/306 (29%), Positives = 126/306 (41%), Gaps = 50/306 (16%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITLPYD---TQQLSKAT 121
R+ +G PTG +HLG YL + + Q I ++L
Sbjct: 7 RVYTGFDPTGPLHLG-YLVPLMKLVQFQQAGHEVFFLIGDLTAIIGDPSKSEERKLLSRE 65
Query: 122 RETAAI--YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 179
LACG+D K+ + S H+EL WLL LN+M+QFK+ +
Sbjct: 66 EVLENAKAQLACGLDPEKSEIVNNSDWLEHLELAWLLRDLGNHFSLNRMLQFKDVKKRLK 125
Query: 180 -GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 238
+ + TYP+L A+DILL ++D P G DQ H+EL R+LA R N
Sbjct: 126 QNPGISLGEFTYPLLQAADILLLKADLQPGGSDQWGHIELGRDLARRFNKKV-------- 177
Query: 239 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 298
FK P L P +++ DG KMSKSA + S I L D K+ + KI++
Sbjct: 178 -------FKKPVGLTNP----LLTGLDGGKKMSKSAGN--SAIFLDDEKESVYKKIQKAY 224
Query: 299 TDSSAGLEFDNLERPECNN-LLSIYQLISGKTKGEVAEE----CQNMN--WGTFKPLLTD 351
TD + D E +N + I + GK AEE G K +
Sbjct: 225 TDPDREVRKDLKLFTELSNEEIEILEAFLGKGPKREAEELLAREVTGLVHGGDLKKAAAE 284
Query: 352 ALIEHL 357
A+ L
Sbjct: 285 AVNALL 290
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.
Length = 333
Score = 235 bits (602), Expect = 9e-75
Identities = 110/345 (31%), Positives = 168/345 (48%), Gaps = 39/345 (11%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ------ITL---------PYDTQQLSKATR 122
K I++G +PTG +HLG+Y+G++KN +ALQ + + + +++ +
Sbjct: 2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNIL 61
Query: 123 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK-SHKAGGE 181
E A YLA GID +K+++F+QS + EL + + L + K + + K G
Sbjct: 62 EVALDYLAVGIDPAKSTIFIQSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGR 121
Query: 182 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 241
++ LTYPV A+DI +++ VPVG+DQ +E TRE+ R N LY
Sbjct: 122 SIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTREIVRRFNSLY----------- 170
Query: 242 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 301
G + PE L+P AG R+ L DG +KMSK S + I L D D I K+ TD
Sbjct: 171 GTDVLVEPEALLPEAG-RLPGL-DGKAKMSK---SLGNAIYLSDDADTIKKKVMSMYTD- 224
Query: 302 SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWG-----TFKPLLTDALIEH 356
+ ++ + E N + + K EVAE + G K L + L E
Sbjct: 225 PNHIRVEDPGKVEGNVVFTYLDAF-DPDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQEL 283
Query: 357 LHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMG 401
L PI+ R E D Y+ ++L G+ KA ++A TL+ V AMG
Sbjct: 284 LAPIRERRAEFAKDPGYVLEILKAGSEKAREVAAQTLSEVKDAMG 328
>gnl|CDD|183401 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; Reviewed.
Length = 398
Score = 210 bits (536), Expect = 5e-64
Identities = 117/400 (29%), Positives = 195/400 (48%), Gaps = 84/400 (21%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDT-QQLSKATRE 123
R++SG++PTG +HLG+Y G +KNW+ LQ +T Y+T + + K +
Sbjct: 3 DRVLSGMRPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWD 62
Query: 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 183
+LA G+D ++A++F+QS V H EL LLS TP+GWL ++ +K++ K +++
Sbjct: 63 MVIDWLAAGVDPAQATLFIQSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDL 122
Query: 184 GV-ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK-------- 234
L YP+L ++DIL+Y++ VPVGEDQ H+E+TRE+A R N+LYG
Sbjct: 123 STYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTREIARRFNHLYGREPGFEEKAEA 182
Query: 235 -WKKLGGRGGAIF---------------------------------------------KV 248
KKLG + ++ K+
Sbjct: 183 AIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGKI 242
Query: 249 ----PEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304
P+ L+ A +++ L DG KMSKS + I L + + + KI+ TD +
Sbjct: 243 ILPEPQALLTEA-SKMPGL-DG-QKMSKSY---GNTIGLREDPESVTKKIRTMPTDPARV 296
Query: 305 LEFDNLERPECNNLLSIYQLISGK-TKGEVAEECQNMNWGTF--KPLLTDALIEHLHPIQ 361
D + PE + ++Q+ S + TK V + C++ G K + DA++ P++
Sbjct: 297 RRTDPGD-PEKCPVWQLHQVYSDEETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMR 355
Query: 362 VRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMG 401
R ++ D + + ++ADG KA +A T+ +V +AMG
Sbjct: 356 ERAQKYEDDPSLVRAIVADGCEKARKVARETMRDVREAMG 395
>gnl|CDD|183592 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional.
Length = 332
Score = 205 bits (523), Expect = 6e-63
Identities = 116/353 (32%), Positives = 179/353 (50%), Gaps = 52/353 (14%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQITLPY------------------DTQQLSK 119
+K +++G++PTG HLGNY+GAIK ALQ+ Y D +Q
Sbjct: 3 EKIMLTGIKPTGYPHLGNYIGAIKP--ALQMAKNYEGKALYFIADYHALNAVHDPEQFRS 60
Query: 120 ATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK---EKSH 176
TRE AA +L+ G+D + QS V EL W+LS TP G +N+ +K +++
Sbjct: 61 YTREVAATWLSLGLDPEDVIFYRQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNK 120
Query: 177 KAG-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 231
+AG G N+G L TYP+LMA+DILL+Q+ VPVG+DQ QH+E+ R++A N+ +
Sbjct: 121 EAGLDLDAGVNMG--LYTYPILMAADILLFQATHVPVGKDQIQHIEIARDIATYFNHTF- 177
Query: 232 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 291
G F +PE +I ++ DG KMSKS + I L ++ +
Sbjct: 178 -----------GDTFTLPEYVI-QEEGAILPGLDG-RKMSKSY---GNVIPLFAEQEKLR 221
Query: 292 NKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEE--CQNMNWGTFKPLL 349
I + KTDSS E + PE + L +IY+ + + + + E + WG K L
Sbjct: 222 KLIFKIKTDSSLPNEPKD---PETSALFTIYKEFATEEEVQSMREKYETGIGWGDVKKEL 278
Query: 350 TDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 402
+ L + +Y M++ + LD+ L GA +A +IA L + +A+GF
Sbjct: 279 FRVVDRELAGPREKYAMYMNEPSLLDEALEKGAERAREIAKPNLAEIKKAIGF 331
>gnl|CDD|237036 PRK12284, PRK12284, tryptophanyl-tRNA synthetase; Reviewed.
Length = 431
Score = 169 bits (431), Expect = 2e-48
Identities = 117/350 (33%), Positives = 176/350 (50%), Gaps = 46/350 (13%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQITLP----------Y-------DTQQLSKATR 122
R+++G+ TG+ HLGNY GAI+ IA P Y D ++ ++T
Sbjct: 4 RVLTGITTTGTPHLGNYAGAIRPAIA-ASRQPGVESFYFLADYHALIKCDDPARIQRSTL 62
Query: 123 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK---EKSHKAG 179
E AA +LA G+D + + + QS + EL WLL+ G LN+ +K +K+ AG
Sbjct: 63 EIAATWLAAGLDPERVTFYRQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAG 122
Query: 180 GE---NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 236
+ V L YPVLMA+DIL++ + VPVG DQ QH+E+ R++A+R N+LY
Sbjct: 123 EDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQHIEMARDIAQRFNHLY------ 176
Query: 237 KLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 296
GG F +PE +I + A + L DG KMSKS + I L P++ + I
Sbjct: 177 -----GGEFFVLPEAVIEESVATLPGL-DG-RKMSKSY---DNTIPLFAPREELKKAIFS 226
Query: 297 CKTDSSAGLEFDNLERPECNNLLSIYQLISG--KTKGEVAEECQNMNWGTFKPLLTDALI 354
TDS A E + E + L +YQ + +T + WG K L + +
Sbjct: 227 IVTDSRAPGE---PKDTEGSALFQLYQAFATPEETAAFRQALADGIGWGDAKQRLFERID 283
Query: 355 EHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 404
L P++ RYE +++ A ++ +L GAAKA IA L + +A+G LR
Sbjct: 284 RELAPMRERYEALIARPADIEDILLAGAAKARRIATPFLAELREAVG-LR 332
>gnl|CDD|173893 cd00395, Tyr_Trp_RS_core, catalytic core domain of tyrosinyl-tRNA
and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA
synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. These enzymes attach Tyr or Trp,
respectively, to the appropriate tRNA. These class I
enzymes are homodimers, which aminoacylate the 2'-OH of
the nucleotide at the 3' of the appropriate tRNA. The
core domain is based on the Rossman fold and is
responsible for the ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. It contains the class
I characteristic HIGH and KMSKS motifs, which are
involved in ATP binding.
Length = 273
Score = 110 bits (275), Expect = 1e-27
Identities = 60/313 (19%), Positives = 106/313 (33%), Gaps = 80/313 (25%)
Query: 81 IVSGVQPTG-SIHLGNYLG----------------------AIKNWIALQIT--LPYDTQ 115
+ G+ PT S+H+G+ +G I + + + D +
Sbjct: 2 LYCGIDPTADSLHIGHLIGLLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPE 61
Query: 116 QLSKATRETAAIYLACGIDNS--KASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQ 170
++ + R AA YLA GI +A++F S AH++ + L + ++ +
Sbjct: 62 EVRQNIRRIAAQYLAVGIFEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTS 121
Query: 171 FKEKSHKAGGENVGVALLTYPVLMASDILLYQS----DFVPVGEDQKQHLELTRELAERV 226
F+ +S + + TYP L A+D LL + D P G DQ ++ L RELA R
Sbjct: 122 FQSRSEEG----ISATEFTYPPLQAADFLLLNTTEGCDIQPGGSDQWGNITLGRELARRF 177
Query: 227 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 286
N F + E L P V L K KS +
Sbjct: 178 N-----------------GFTIAEGLTIP---LVTKLDG--PKFGKSESGPKWLDTEKTS 215
Query: 287 KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMN----W 342
S ++++I + + +K E+ Q +
Sbjct: 216 PYEFYQFWI--NAVDS--------------DVINILKYFTFLSKEEIERLEQEQYEAPGY 259
Query: 343 GTFKPLLTDALIE 355
+ L + + +
Sbjct: 260 RVAQKTLAEEVTK 272
>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed.
Length = 368
Score = 73.0 bits (180), Expect = 3e-14
Identities = 81/330 (24%), Positives = 129/330 (39%), Gaps = 85/330 (25%)
Query: 81 IVSGVQPTGSIHLGNYLGAIK-NW-------IALQIT---------LPYDTQQLSKATRE 123
+ +G P+G +H+G+ + + W + + I L ++ + + E
Sbjct: 69 VYTGFMPSGPMHIGHKMVFDELKWHQEFGANVYIPIADDEAYAARGLSWE--ETREWAYE 126
Query: 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GEN 182
+A G D K ++ QS +L A + K + F E G
Sbjct: 127 YILDLIALGFDPDKTEIYFQSENIKVYDL------AFELA---KKVNFSELKAIYGFTGE 177
Query: 183 VGVALLTYPVLMASDILLYQSDF------VPVGEDQKQHLELTRELAERVNYLYGGRKWK 236
+ + YP A+DIL Q + VPVG DQ H+ LTR++AER++ YG
Sbjct: 178 TNIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTRDIAERLHGGYG----- 232
Query: 237 KLGGRGGAIFKVPEPLIPPAG--ARVM-SLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 293
I P+ + M LT G KMS S P +S I L D + + K
Sbjct: 233 ---------------FIKPSSTYHKFMPGLTGG--KMSSSKP--ESAIYLTDDPETVKKK 273
Query: 294 IKRCKTDSSAGLEFDNLER-----PE-CNNLLSIYQLIS-------GKTKGEVAEECQN- 339
I + T A LE +R P+ C +Y+L+ + K E+ EEC++
Sbjct: 274 IMKALTGGRATLE---EQRKLGGEPDEC----VVYELLLYHLEEDDKELK-EIYEECRSG 325
Query: 340 -MNWGTFKPLLTDALIEHLHPIQVRYEEIM 368
+ G K + + E L Q + EE
Sbjct: 326 ELLCGECKKEAAEKIAEFLKEHQEKREEAR 355
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 51.3 bits (123), Expect = 5e-08
Identities = 39/196 (19%), Positives = 63/196 (32%), Gaps = 58/196 (29%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQITLPYDTQQLSKATRETAAIYLACGIDNSKASV 140
SG+ P G +H+G+ + L Q K + +A ID++ +
Sbjct: 2 TFSGITPNGYLHIGHLRTIVTFDF-LA-------QAYRKLGYKV--RCIAL-IDDAGGLI 50
Query: 141 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL 200
++ + + A W+ ++ + Y L A+D LL
Sbjct: 51 GDPANKK------GENAKAFVERWIERIK----------------EDVEYMFLQAADFLL 88
Query: 201 ---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAG 257
+ D G DQ H+EL EL ++ P L
Sbjct: 89 LYETECDIHLGGSDQLGHIELGLELLKKAG-----------------GPARPFGLTFG-- 129
Query: 258 ARVMSLTDGLSKMSKS 273
RVM +KMSKS
Sbjct: 130 -RVMG--ADGTKMSKS 142
>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated.
Length = 329
Score = 48.7 bits (117), Expect = 2e-06
Identities = 36/121 (29%), Positives = 48/121 (39%), Gaps = 33/121 (27%)
Query: 181 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLG 239
E V+ L YP++ +DI D G DQ K H+ L RE+ ++ Y
Sbjct: 147 EEPDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIHM-LAREVLPKLGY----------- 194
Query: 240 GRGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 295
K P PL+ L G KMSKS P S I + D + I KIK
Sbjct: 195 -------KKPVCIHTPLLT-------GLDGGGIKMSKSKP--GSAIFVHDSPEEIRRKIK 238
Query: 296 R 296
+
Sbjct: 239 K 239
>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase. This tyrosyl-tRNA
synthetase model starts picking up tryptophanyl-tRNA
synthetases at scores of 0 and below. The proteins found
by this model have a deep split between two groups. One
group contains bacterial and organellar eukaryotic
examples. The other contains archaeal and cytosolic
eukaryotic examples [Protein synthesis, tRNA
aminoacylation].
Length = 377
Score = 41.6 bits (98), Expect = 5e-04
Identities = 57/291 (19%), Positives = 97/291 (33%), Gaps = 49/291 (16%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQ------ITLPYDT--------------QQ 116
K ++ G PT S+HLG+ + + Q I L D +
Sbjct: 30 KIKLYVGFDPTAPSLHLGHLV-PLLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKL 88
Query: 117 LSKATR-ETAAIY---LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK 172
L++ E A +A +D KA S + + + I +N+M++
Sbjct: 89 LTREEVQENAENIKKQIARFLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRD 148
Query: 173 EKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGG 232
S + + ++ YP+L A D + D G DQ ++ R+L R
Sbjct: 149 AFSSRL-ERGISLSEFIYPLLQAYDFVYLNVDLQIGGSDQWGNILKGRDLIRRNL----- 202
Query: 233 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 292
LG F + PL+ PA M ++G +S ++ D
Sbjct: 203 ---PSLG------FGLTVPLLTPADGEKMGKSEG-GAVSLDEGKYDFYQFWINTPDEDVK 252
Query: 293 KIKR--CKTDSSAGLEFDNLERP-----ECNNLLSIYQLISGKTKGEVAEE 336
KI + L+ P + N I + + G+ AEE
Sbjct: 253 KILKLFTFLGLEEIEALVELKGPSPREVKENLAKEITKYVHGEEAALAAEE 303
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA
synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic
core domain. TyrRS is a homodimer which attaches Tyr to
the appropriate tRNA. TyrRS is a class I tRNA
synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formationof the enzyme bound
aminoacyl-adenylate. It contains the class I
characteristic HIGH and KMSKS motifs, which are involved
in ATP binding.
Length = 269
Score = 36.0 bits (84), Expect = 0.022
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 25/134 (18%)
Query: 165 LNKMIQFK-EKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 223
+N+M++ K E + + YP+L A D + D G DQ+ ++ L R+L
Sbjct: 113 VNRMLRRDAVKVRLEEEEGISFSEFIYPLLQAYDFVYLDVDLQLGGSDQRGNITLGRDLI 172
Query: 224 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 283
++ Y KK + + PL+ DG KMSKS + +
Sbjct: 173 RKLGY-------KK-------VVGLTTPLLTGL--------DG-GKMSKSEG-NAIWDPV 208
Query: 284 LDPKDVIANKIKRC 297
LD + KI+
Sbjct: 209 LDSPYDVYQKIRNA 222
>gnl|CDD|173541 PTZ00348, PTZ00348, tyrosyl-tRNA synthetase; Provisional.
Length = 682
Score = 36.0 bits (83), Expect = 0.036
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 22/110 (20%)
Query: 186 ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAI 245
A + YP++ +DI ++D +G DQ++ L RE + + GRK K
Sbjct: 159 AQVLYPLMQCADIFFLKADICQLGLDQRKVNMLAREYCDLI-----GRKLK--------- 204
Query: 246 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 295
P+I + + L G +KMSKS P S I + D ++ +A KI+
Sbjct: 205 -----PVI-LSHHMLAGLKQGQAKMSKSDPD--SAIFMEDTEEDVARKIR 246
>gnl|CDD|223240 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 401
Score = 35.7 bits (83), Expect = 0.037
Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 23/134 (17%)
Query: 165 LNKMIQFK-EKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV-GEDQKQHLELTREL 222
+N+M++ K + + YP+L A D + Y + + + G DQ ++ R+L
Sbjct: 142 VNRMLRRDDVKKRLEREQGISFTEFNYPLLQAYDFV-YLNKDLQLGGSDQWGNILAGRDL 200
Query: 223 AERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS-----D 277
R+ KK+ G + PL+ + M ++G + S +
Sbjct: 201 IRRLGQ-------KKVVG-------LTTPLLTGLDGKKMGKSEGGAVWLDSEKTSPYDFY 246
Query: 278 QSRINLLDPKDVIA 291
Q +N+ D DV
Sbjct: 247 QYWMNIED-ADVKR 259
>gnl|CDD|225207 COG2326, COG2326, Uncharacterized conserved protein [Function
unknown].
Length = 270
Score = 34.2 bits (79), Expect = 0.089
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 18/79 (22%)
Query: 210 EDQKQHLELTRELAERVNYLYGGRKWKKL--------GGRGGAIFKVPEPLIPPAGARVM 261
ED ++ LEL + ++ + + G+GGAI ++ E L P GARV+
Sbjct: 48 EDYEKELELLQIELVKLQRWVAETGQRVVIVFEGRDAAGKGGAIKRITEAL-NPRGARVV 106
Query: 262 SLTDGLSKMSKSAPSDQSR 280
+L AP+D+ R
Sbjct: 107 ALP---------APTDRER 116
>gnl|CDD|173912 cd02156, nt_trans, nucleotidyl transferase superfamily. nt_trans
(nucleotidyl transferase) This superfamily includes the
class I amino-acyl tRNA synthetases, pantothenate
synthetase (PanC), ATP sulfurylase, and the
cytidylyltransferases, all of which have a conserved
dinucleotide-binding domain.
Length = 105
Score = 31.0 bits (70), Expect = 0.34
Identities = 16/76 (21%), Positives = 22/76 (28%), Gaps = 23/76 (30%)
Query: 198 ILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAG 257
+ D GED +Q+ EL R W K + PE + P
Sbjct: 52 KESIEEDISVCGEDFQQNRELYR--------------WVK---DNITLPVDPEQVELPRL 94
Query: 258 ARVMSLTDGLSKMSKS 273
+ MSK
Sbjct: 95 N------LETTVMSKR 104
>gnl|CDD|112775 pfam03976, PPK2, Polyphosphate kinase 2 (PPK2). Inorganic
polyphosphate (polyP) plays a role in metabolism and
regulation and has been proposed to serve as a energy
source in a pre-ATP world. In prokaryotes, the synthesis
and utilisation of polyP are catalyzed by PPK1, PPK2 and
polyphosphatases. Proteins with a single PPK2 domain
catalyze polyP-dependent phosphorylation of ADP to ATP,
whereas proteins containing 2 fused PPK2 domains
phosphorylate AMP to ADP. The structure of PPK2 from
Pseudomonas aeruginosa has revealed a a 3-layer
alpha/beta/alpha sandwich fold with an alpha-helical lid
similar to the structures of microbial thymidylate
kinases.
Length = 229
Score = 30.0 bits (68), Expect = 1.6
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 23/81 (28%)
Query: 210 EDQKQHLELTRELAE----------RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGAR 259
E + + +L EL + ++ ++ GR G+GGAI +V E L P G R
Sbjct: 6 EYEAELAKLQIELVKLQEWVYAEGKKLVVIFEGRD---AAGKGGAIKRVTEAL-NPRGYR 61
Query: 260 VMSLTDGLSKMSKSAPSDQSR 280
+++L AP+++ R
Sbjct: 62 IVALP---------APTEEER 73
>gnl|CDD|191352 pfam05716, AKAP_110, A-kinase anchor protein 110 kDa (AKAP 110).
This family consists of several mammalian protein kinase
A anchoring protein 3 (PRKA3) or A-kinase anchor protein
110 kDa (AKAP 110) sequences. Agents that increase
intracellular cAMP are potent stimulators of sperm
motility. Anchoring inhibitor peptides, designed to
disrupt the interaction of the cAMP-dependent protein
kinase A (PKA) with A kinase-anchoring proteins (AKAPs),
are potent inhibitors of sperm motility. PKA anchoring
is a key biochemical mechanism controlling motility.
AKAP110 shares compartments with both RI and RII
isoforms of PKA and may function as a regulator of both
motility- and head-associated functions such as
capacitation and the acrosome reaction.
Length = 685
Score = 30.0 bits (67), Expect = 2.5
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 349 LTDALIEHLHPIQVRYEEIMSDSAYLDKV----LADGAAKAADIADATLNNVYQAM 400
L D+ +++LH + +M+D+ ++ V + G+ KA DI DA L +Y +
Sbjct: 167 LIDSFMKNLHNVT---GVLMTDTDFVSAVKRNLFSHGSQKATDIMDAMLKKLYSVL 219
>gnl|CDD|232987 TIGR00467, lysS_arch, lysyl-tRNA synthetase, archaeal and
spirochete. This model represents the lysyl-tRNA
synthetases that are class I amino-acyl tRNA
synthetases. It includes archaeal and spirochete
examples of the enzyme. All other known examples are
class IIc amino-acyl tRNA synthetases and seem to form
a separate orthologous set [Protein synthesis, tRNA
aminoacylation].
Length = 515
Score = 29.5 bits (66), Expect = 3.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 78 KKRIVSGVQPTGSIHLGNY 96
+ SG+ P+G IH+GN+
Sbjct: 19 LYTVASGITPSGHIHIGNF 37
>gnl|CDD|237206 PRK12793, flaF, flagellar biosynthesis regulatory protein FlaF;
Reviewed.
Length = 115
Score = 28.0 bits (63), Expect = 3.4
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 17/57 (29%)
Query: 361 QVRYEEIMSDSAYLDK------------VLADGAAKAADIADATLNNVYQAMGFLRR 405
Q Y E+M DS + +L AK A +A +A+ F RR
Sbjct: 3 QFSYAEVMEDSVASARERERQAFDRSIDLLEAARAKGAYSREAI-----EALYFTRR 54
>gnl|CDD|225566 COG3022, COG3022, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 253
Score = 28.8 bits (65), Expect = 5.1
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 244 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK-IKRCKTDSS 302
+ K+ L P + +M ++D K A + R + + A + I D
Sbjct: 33 ELLKILRKLSPNQISSLMKISD------KLAGLNAQRFQDWETQFTPARQAILAFNGDVY 86
Query: 303 AGLEFDNLERPECNNLLSIYQLISG 327
GL+ + L + L +++SG
Sbjct: 87 TGLDAETLSEKDQAYLQQHLRILSG 111
>gnl|CDD|184108 PRK13518, PRK13518, carboxylate-amine ligase; Provisional.
Length = 357
Score = 29.0 bits (65), Expect = 5.2
Identities = 10/38 (26%), Positives = 26/38 (68%)
Query: 124 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATP 161
TA +++ G+D++ +V++ + +R H+ ++ LS+ +P
Sbjct: 133 TAGLHVHVGVDDADKAVWIANELRWHLPILLALSANSP 170
>gnl|CDD|213852 TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family.
Members of this protein family are designated
polyphosphate kinase 2 (PPK2) after the characterized
protein in Pseudomonas aeruginosa. This family comprises
one of three well-separated clades in the larger family
described by pfam03976. PA0141 from this family has been
shown capable of operating in reverse, with GDP
preferred (over ADP) as a substrate, producing GTP (or
ATP) by transfer of a phosphate residue from
polyphosphate. Most species with a member of this family
also encode a polyphosphate kinase 1 (PPK1) [Central
intermediary metabolism, Phosphorus compounds].
Length = 230
Score = 28.4 bits (64), Expect = 5.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 10/41 (24%)
Query: 240 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 280
G+GG I ++ E L P GARV++L P+D+ R
Sbjct: 43 GKGGTIKRITEHL-NPRGARVVAL---------PKPTDRER 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.393
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,152,740
Number of extensions: 1901933
Number of successful extensions: 1517
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1466
Number of HSP's successfully gapped: 34
Length of query: 405
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 306
Effective length of database: 6,546,556
Effective search space: 2003246136
Effective search space used: 2003246136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.3 bits)