RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015509
(405 letters)
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 534 bits (1379), Expect = 0.0
Identities = 151/358 (42%), Positives = 206/358 (57%), Gaps = 29/358 (8%)
Query: 64 LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------IT 109
+SEP + S K + SG QP+G + +GNY+GA++ W+ +Q IT
Sbjct: 1 MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60
Query: 110 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 169
D L K T +T A+YLACGID K+++FVQSHV H +L W L+ T G L++M
Sbjct: 61 ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120
Query: 170 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 229
QFK+KS + EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N L
Sbjct: 121 QFKDKSAR-YAENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 179
Query: 230 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 289
YG IFK+PEP IP AGARVMSL D KMSKS + + I LL+
Sbjct: 180 YGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKS 227
Query: 290 IANKIKRCKTDSSA--GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKP 347
+ KIKR TDS + +D ++ +NLL I ++G++ E+ + +G K
Sbjct: 228 VVKKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKG 287
Query: 348 LLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
+ DA+ L +Q RY D A L V+ +GAAKA A TL VY+A+GF+ +
Sbjct: 288 AVADAVSGMLSELQERYRTYREDEALLQDVMREGAAKARARAQVTLAKVYEAIGFVAQ 345
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 530 bits (1368), Expect = 0.0
Identities = 141/350 (40%), Positives = 202/350 (57%), Gaps = 27/350 (7%)
Query: 73 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLS 118
S++ K ++SGVQP+G + +GNYLGA++ W +Q IT+ D Q L
Sbjct: 1 SNAMSKPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALH 60
Query: 119 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 178
+AT + AI LA G+D K+++FVQSHV H +L W+L+ T +G L++M QFK+KS +
Sbjct: 61 EATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSAR- 119
Query: 179 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 238
+V L YPVLMA+DILLY + VPVG DQKQHLEL R++A R N +Y +
Sbjct: 120 YANDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQ---- 175
Query: 239 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 298
IF +PEP IP ARVMSL D KMSKS + ++ I LL+ I KI + +
Sbjct: 176 -----PIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQ 230
Query: 299 TDSSAGLE--FDNLERPECNNLLSIYQLISGKTKGEVAEECQNM-NWGTFKPLLTDALIE 355
TD+ +D + NL+ +Y +GKT E+ + + +G FK + +A++
Sbjct: 231 TDAETPPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVVA 290
Query: 356 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
L P+Q Y+ I +D YL+ V+ DGA KA+ A TL VY A+GF+ R
Sbjct: 291 MLEPVQAEYQRIRNDREYLNSVMRDGAEKASAKALQTLKKVYAAVGFVAR 340
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 526 bits (1357), Expect = 0.0
Identities = 154/341 (45%), Positives = 203/341 (59%), Gaps = 29/341 (8%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRET 124
K I SG+QP+G I +GNY+GA++ ++ LQ IT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 125 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 184
AA+YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS--AGKEAVS 119
Query: 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 244
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N YG
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYG------------E 167
Query: 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 364
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 365 EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
M +S LD+VL +GA KA +A + + QAMG RR
Sbjct: 288 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGRR 327
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 527 bits (1360), Expect = 0.0
Identities = 150/348 (43%), Positives = 204/348 (58%), Gaps = 29/348 (8%)
Query: 72 ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQL 117
++K+ I SG+QP+GS+ LGNY+GA+K ++ LQ IT+P D +L
Sbjct: 29 IDPFTMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLEL 88
Query: 118 SKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 177
K R AA+YLA G+D KA++F+QS V AH + W++ IG L +M QFK+KS
Sbjct: 89 RKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKS-- 146
Query: 178 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 237
G E V LLTYP LMA+DILLY +D VP GEDQKQHLELTR LAER N Y
Sbjct: 147 KGNEAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYND----- 201
Query: 238 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 297
IF +PE IP GAR+MSL D L KMSKS P+ ++ I LLD + KIK
Sbjct: 202 -------IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSA 254
Query: 298 KTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHL 357
TDS ++FD +P +NLL+IY ++ T E+ + + +G FK L + ++ L
Sbjct: 255 VTDSEGIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNAL 314
Query: 358 HPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
PIQ RY E++ +S LD++L +GA +A A+ L + AMG R+
Sbjct: 315 KPIQDRYYELI-ESEELDRILDEGAERANRTANKMLKKMENAMGLGRK 361
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 515 bits (1328), Expect = 0.0
Identities = 114/357 (31%), Positives = 173/357 (48%), Gaps = 42/357 (11%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATR 122
+ KR ++G+Q +G HLGNYLG +++ I LQ IT+ + Q L +
Sbjct: 3 MMKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNF 62
Query: 123 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK----- 177
+ LA G+D KA +F+QS + H + +L+ + +G L +M QFK K +
Sbjct: 63 DLVRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNP 122
Query: 178 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 237
G N+ LLTYP LMA DILLYQ D VPVG DQKQHLELTR+LA+R+ +
Sbjct: 123 NGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFK------ 176
Query: 238 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 297
++P+ + R+M L D KMSKS+ + I L DPK+V+ KI++
Sbjct: 177 ------LKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQA 230
Query: 298 KTDSSAGLEFDNLERPECNNLLSIYQLISGKT---------KGEVAEECQNMNWGTFKPL 348
TDS + F + +P N+L+I + + + ++ ++ K
Sbjct: 231 TTDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNA 290
Query: 349 LTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
LT+A + L IQ + E+I + + L G +A A TL Y G +
Sbjct: 291 LTEATVNLLVNIQRKREQISRE--QVFNCLQAGKNQAQATARTTLALFYDGFGLGSQ 345
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 477 bits (1231), Expect = e-170
Identities = 106/341 (31%), Positives = 180/341 (52%), Gaps = 33/341 (9%)
Query: 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKAT 121
S R+++G+QP+G +H+GNY GAIK + Q +T D ++L + +
Sbjct: 1 SNAMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNS 60
Query: 122 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 181
+ AA +L+ GID K+ ++QS V+ +EL W+LS TP+G L + +K+K K G
Sbjct: 61 LKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLERAHSYKDKVAK--GL 118
Query: 182 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 241
+ L +YPVLMA+DILL+ + VPVG+DQ QH+E+ R++A +VN +G
Sbjct: 119 SASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEWG---------- 168
Query: 242 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 301
IF +PE + A V+ DG +KMSKS Q+ I++ + + +I TDS
Sbjct: 169 --EIFTLPEARVNEEVAVVVGT-DG-AKMSKS---YQNTIDIFSSEKTLKKQISSIVTDS 221
Query: 302 SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQ 361
+A + + E + ++ SG+ + ++ E +G FK L + + + +
Sbjct: 222 TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAR 281
Query: 362 VRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 402
+Y E++ ++L ++L GA KA IA + +Y+ +G
Sbjct: 282 EKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL 322
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 476 bits (1227), Expect = e-169
Identities = 135/348 (38%), Positives = 191/348 (54%), Gaps = 40/348 (11%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ----------------ITLPY--DTQQLSKA 120
KR++SG+QP+G IH+GNYLGAIK W+A+ +T P D L++
Sbjct: 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQR 61
Query: 121 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 180
T E A + +A G+D K ++FVQSHV H EL W+ ++ TP+G L +M QFK+K+ K
Sbjct: 62 TFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--Q 119
Query: 181 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 240
E V LL YPVL A+DIL+Y++D VPVGEDQ QH+ELTRE+A R N+L+
Sbjct: 120 ETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLF---------- 169
Query: 241 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 300
G F P+ L+ P RV + DG +KMSKS + I LL+P++ I KI+ D
Sbjct: 170 --GETFPEPQALLNPEAPRVPGI-DGKAKMSKSLG---NTIGLLEPEESIWQKIQHLPDD 223
Query: 301 SSAGLEFDNLERPECNNLLSIYQLISGKTKGE-VAEECQNMNWGT--FKPLLTDALIEHL 357
+ + PE L + + K E + EE + GT K +L D L+E L
Sbjct: 224 -PQRIRLSDPGDPERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEAL 282
Query: 358 HPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 405
PI+ R E + D Y+ L +GA +A +A AT+ V + +G L
Sbjct: 283 RPIRERAEALKKDPDYVMDALLEGAKRARAVAQATMEEVREKVGLLLP 330
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 429 bits (1106), Expect = e-150
Identities = 97/365 (26%), Positives = 158/365 (43%), Gaps = 38/365 (10%)
Query: 59 YCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ----------- 107
+ ++ + T P +++ + R+++G +PTG++HLG+ G+++N + LQ
Sbjct: 3 FVDLEVPTMTTPTPAATPARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLAD 62
Query: 108 ---ITLPYD-TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIG 163
+T +D +Q+ + A YLA G+D K + VQS V EL + +
Sbjct: 63 VQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVS 122
Query: 164 WLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 222
L + K + + G GE V YPV A+DI + + VPVG+DQ LE TRE+
Sbjct: 123 HLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREI 182
Query: 223 AERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 282
R N LY + P+ + R+ L DG +KMSKS + I
Sbjct: 183 VRRFNALY------------APVLAEPQAQLSRV-PRLPGL-DGQAKMSKSLG---NAIA 225
Query: 283 LLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKG--EVAEECQN- 339
L D D +A K+ TD L + R E N + + + ++ +
Sbjct: 226 LGDSADEVARKVMGMYTD-PGHLRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAG 284
Query: 340 -MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQ 398
+ K L D L L PI+ R E D + + + +G A+ ++A TL V +
Sbjct: 285 GLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAVLRFVTEGTARGREVAAQTLGQVRR 344
Query: 399 AMGFL 403
AM
Sbjct: 345 AMRLF 349
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 414 bits (1066), Expect = e-145
Identities = 113/347 (32%), Positives = 169/347 (48%), Gaps = 40/347 (11%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITLPY-DTQQLSKAT 121
RI+SG++PTG +H+G+ +GA++NW+ LQ +T Y D +L + T
Sbjct: 12 HMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYT 71
Query: 122 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-G 180
R+ +LACGID K+ +FVQS V+ H EL L S + L ++ +KE +
Sbjct: 72 RDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYK 131
Query: 181 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 240
+ L YPVL A+DIL+Y+++ VPVGEDQ H+ELTRE+A R NYLY
Sbjct: 132 DLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLY---------- 181
Query: 241 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 300
+F PE ++ ++ DG KMSK S + INL + + I R TD
Sbjct: 182 --DEVFPEPEAILSRV-PKLPGT-DG-RKMSK---SYGNIINLEISEKELEQTILRMMTD 233
Query: 301 SSAGLEFDNLERPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGTFKPLLTDALIEH 356
A + + PE + +Q + V E C + K LL +
Sbjct: 234 -PARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRK 292
Query: 357 LHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 403
L PI + +I D Y+D V+ +G KA ++A T+ V +AM +
Sbjct: 293 LAPIWENFRKIDEDPHYVDDVIMEGTKKAREVAAKTMEEVRRAMNLM 339
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 271 bits (695), Expect = 2e-88
Identities = 53/341 (15%), Positives = 103/341 (30%), Gaps = 43/341 (12%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITLPYDTQQLSKATR 122
+ G + +G IHLG L A Q L
Sbjct: 33 PLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQE 92
Query: 123 ET--------AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 174
G D K + S + + + + L+++++
Sbjct: 93 VALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITI 152
Query: 175 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 234
+ GE + A L YP++ +DI G DQ++ + E+A+++ Y +
Sbjct: 153 MGRQMGEAIDFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHE 212
Query: 235 WKKLGGRGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 290
+KL + P P KMSKS P S + + D + I
Sbjct: 213 GEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPY--SAVFIHDSPEEI 270
Query: 291 ANKIKRCKTDSS------------AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ 338
K+++ + + + + ++ T E+ +
Sbjct: 271 RQKLRKAFCPAREVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKRDFA 330
Query: 339 N--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 377
++ K + + LI L PI+ +E+ + V
Sbjct: 331 EGKLHPLDLKNAVAEYLINLLEPIRRYFEKHPEPLELMRSV 371
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 270 bits (692), Expect = 2e-84
Identities = 59/369 (15%), Positives = 115/369 (31%), Gaps = 65/369 (17%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------IT---LPYDTQQLSK 119
R G +P+G +H+ + N + + + +++
Sbjct: 40 LIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRI 99
Query: 120 ATRETAAIYLACGIDNSKAS-VFVQSHVRAHVELMWLLS-SATPIGWLNKMIQFKEKSHK 177
R ++ A G+D K ++ + +H + W + + ++ + K
Sbjct: 100 VGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGK 159
Query: 178 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 237
+ A + YP++ DI ++D +G DQ++ L RE + +
Sbjct: 160 -TEGTLTAAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLK------ 212
Query: 238 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 297
P L + L G +KMSKS P S I + D ++ +A KI++
Sbjct: 213 -----------PVILSHH---MLAGLKQGQAKMSKSDPD--SAIFMEDTEEDVARKIRQA 256
Query: 298 KTD-----SSAGLEFDNLERPECNNLLSIY------------QLISGKTKGEVAE----- 335
+SA + + N + Y I G T +
Sbjct: 257 YCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAF 316
Query: 336 ECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNN 395
++ K L D + L P++ + L+ V + A T
Sbjct: 317 VSDEVSEDALKSCLIDEVNALLEPVRQHFASNEEAHELLEAVKSYRKDGATLPLAETALP 376
Query: 396 VYQAMGFLR 404
A
Sbjct: 377 AAPAKPHAC 385
Score = 190 bits (483), Expect = 2e-54
Identities = 42/370 (11%), Positives = 98/370 (26%), Gaps = 71/370 (19%)
Query: 51 HNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGN-YLGAIKNWIALQ-- 107
+R TA A+ + + + + + K++IA
Sbjct: 356 EAVKSYRKDGATLPLAETALPAAPAKPHACMWMPALLKVPLDVAEGMIKVTKDFIAAHPE 415
Query: 108 ------------IT---LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVEL 152
+ + + +S A + A+ A G+ +S V + + +
Sbjct: 416 GTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIVTENEVILGNCDD 475
Query: 153 MWLLS-SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGED 211
W+ L+ + + GGE + ++ + L+ V
Sbjct: 476 FWVSVIGIARKNLLSHVEELY------GGEVRNAGQVIAALMRVATALMLSVSHVISTSL 529
Query: 212 QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMS 271
RE + + R+ +L + +
Sbjct: 530 DGHINAFAREYTKERI-----------------------DCVQTLEGRIPALHRPGAAPA 566
Query: 272 KSAPSDQSRINLLDPKDVIANKIKR--C--KTDSSAGLEFD----------NLERPECNN 317
+ L D I KIK+ +++ + ++ER E N
Sbjct: 567 VLGAD--DVLYLDDNDMDIRRKIKKAYSAPNEEANPVISVAQHLLAQHGALSIERGEANG 624
Query: 318 LLSIYQLISGKTKGEVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLD 375
Y T + +C + ++ K + L++ + + + +
Sbjct: 625 GNVSY-----NTPEALVADCGSGALHPADLKAAVLQLLLDRSAQARALLNGELKKNMTVL 679
Query: 376 KVLADGAAKA 385
+ AK
Sbjct: 680 RNAEKKMAKK 689
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 256 bits (657), Expect = 5e-83
Identities = 53/334 (15%), Positives = 111/334 (33%), Gaps = 63/334 (18%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ------------------ITLPYDTQQLSK 119
+G +P+G IH+ L + N + + + D ++ +
Sbjct: 40 IFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRE 99
Query: 120 ATRETAAIYLACGIDNSKASVFVQSHVR----AHVELMWLLSSATPIGWLNKMIQFKEKS 175
R ++ ACGI+ S +++E M ++ + I + + Q ++
Sbjct: 100 LGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRN 159
Query: 176 HKAGGENVGVALLTYPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGG 232
+ + + + YP + A+D+ D +G DQ++ L E A
Sbjct: 160 ---ESDCLKASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRGL---- 212
Query: 233 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 292
+ I + +MSL+ KMSKS P I + D + ++
Sbjct: 213 -----------------KIPISLSHHMLMSLSGPKKKMSKSDPQ--GAIFMDDTEQEVSE 253
Query: 293 KIKRCKTDSS-------AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTF 345
KI R +++ L NL + E+ +MN
Sbjct: 254 KISRAYCTDETFDNPIFEYIKYLLLRWFGTLNLCG----KIYTDIESIQEDFSSMNKREL 309
Query: 346 KPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLA 379
K + + + + ++ +++ L V +
Sbjct: 310 KTDVANYINTIIDLVREHFKKPELSE-LLSNVKS 342
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 257 bits (659), Expect = 5e-83
Identities = 52/341 (15%), Positives = 112/341 (32%), Gaps = 57/341 (16%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------IT---LPYDTQQLSK 119
K G +P+G +H+ L L + D +++ K
Sbjct: 56 KLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKK 115
Query: 120 ATRETAAIYLACGIDNSKASVFVQS-HVRAHVELMWLLS-SATPIGWLNKMIQFKEKSHK 177
++ +CG++ S + W L + +N+M + + +
Sbjct: 116 VGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGR 175
Query: 178 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 237
+ GE + + YP + +DI D +G DQ++ L RE +
Sbjct: 176 SEGEENYCSQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKI--------- 226
Query: 238 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 297
+ + + + L +G KMSKS + S I + D + + KIK+
Sbjct: 227 -----------KKKPVILSHGMLPGLLEGQEKMSKSDEN--SAIFMDDSESDVNRKIKKA 273
Query: 298 KTDSSAGLEFDNLERPECNNLLSIYQLIS------------GKTKGEVAEECQN--MNWG 343
+E + + + + Y + T E+ + N ++
Sbjct: 274 YCP-PNVIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIHPL 332
Query: 344 TFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAK 384
K + + + L P++ ++ + L+++ K
Sbjct: 333 DLKDNVAMYINKLLQPVRDHFQNNIEAKNLLNEIKKYKVTK 373
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 228 bits (584), Expect = 1e-71
Identities = 50/351 (14%), Positives = 101/351 (28%), Gaps = 57/351 (16%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITLPYDT--QQLSKA 120
+ +G P+G +H+G+ + + + +
Sbjct: 73 GFFLYTGRGPSGPMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRW 132
Query: 121 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 180
+ +A G D K +F S E+ ++ + F E+S
Sbjct: 133 AYDNILDIIAVGFDPDKTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFTEQSK---- 188
Query: 181 ENVGVALLTYPVLMASDILLYQ-SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 239
+ ++ +P + + + +P DQ + L R+ AE + Y
Sbjct: 189 ----IGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGYYKT-------- 236
Query: 240 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 299
+ +P SLT KMS S ++ I L D + + K+ +
Sbjct: 237 ------AALHSKFVP-------SLTSLSGKMSAS--KPETAIYLTDSPEDVEKKVWKFTL 281
Query: 300 DSSAGLEFDNLE---RPECNNLLSIYQLISGKTKGEVAE---ECQN--MNWGTFKPLLTD 351
+ E PE + ++ + ++ E C+N + G K L
Sbjct: 282 TGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLIS 341
Query: 352 ALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 402
+ E L Q R ++ + L +
Sbjct: 342 KIQEFLKEHQRRRKKAEKLVEKFKYTGKLAQEMWNEAIPEPLKRSHHHHHH 392
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 177 bits (450), Expect = 2e-51
Identities = 56/357 (15%), Positives = 112/357 (31%), Gaps = 64/357 (17%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQ---------------ITLPYDTQQLSKA 120
+ +G P+ ++H+G+ + I W+ + Q
Sbjct: 108 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 167
Query: 121 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 180
E A +ACG D +K F+ S + + I Q K
Sbjct: 168 AVENAKDIIACGFDINK--TFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGI--FGFT 223
Query: 181 ENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNYL 229
++ + +++P + A+ +P DQ + +TR++A R+ Y
Sbjct: 224 DSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY- 282
Query: 230 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 289
P+P + + +L +KMS S P+ S I L D
Sbjct: 283 -------------------PKPALLHST-FFPALQGAQTKMSASDPN--SSIFLTDTAKQ 320
Query: 290 IANKIKRCKTDSSAGLEFD------NLERPECNNLLSIYQLISGKTKGEVAEECQN--MN 341
I K+ + + N + L+ + L ++ ++ + M
Sbjct: 321 IKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFF-LEDDDKLEQIRKDYTSGAML 379
Query: 342 WGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQ 398
G K L + L + Q R +E+ + + +A A ++ +
Sbjct: 380 TGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQKLAAALEHHHHH 436
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 163 bits (414), Expect = 1e-46
Identities = 46/349 (13%), Positives = 97/349 (27%), Gaps = 69/349 (19%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQ---------------ITLPYDTQQLSKA 120
+ +G P+ S+H+G+ + + W+ +Q+
Sbjct: 78 PFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAM 137
Query: 121 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 179
T E +A G D +F ++ M+ + + + + G
Sbjct: 138 TTENIKDIIAMGFDPELTFIFRDFD---YMGCMY-----RTVAKIERAFTASQVRGCFGF 189
Query: 180 GENVGVALLTYPVLMASDILLYQSD------------FVPVGEDQKQHLELTRELAERVN 227
+P + A+ +P DQ + LTR++A R+
Sbjct: 190 AMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLG 249
Query: 228 YLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 287
YL P + L+ KMS S + + L D +
Sbjct: 250 YLK------------------PAVIHSK---FFPGLSGPKGKMSSS---SGTAVLLTDTE 285
Query: 288 DVIANKIKRCKTDSSAGLEFDNLE---RPECNNLLSIYQLI--SGKTKGEVAEECQN--M 340
++ +KI + + ++ E + + + V +E +
Sbjct: 286 KMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRI 345
Query: 341 NWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIA 389
G K LL + + Q + + + + L
Sbjct: 346 MTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIMGPAKKAAT 394
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 160 bits (405), Expect = 2e-45
Identities = 55/357 (15%), Positives = 107/357 (29%), Gaps = 76/357 (21%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQITLPYDT------------------QQLS 118
+ +G P+ S+H+G+ + + LQ T ++
Sbjct: 74 LFYLYTGRGPSSESLHVGHLVPFLFTKY-LQDTFKVPLVIQLTDDEKFIFKSNLTLEETH 132
Query: 119 KATRETAAIYLACGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 177
E +ACG D +F + + + + + FK+ +
Sbjct: 133 NYAYENMKDIIACGFDPELTFIFTNLEYIAELYPDILRIEKKISCSQIKSIFGFKDSCN- 191
Query: 178 AGGENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERV 226
V +P + A+ VP DQ + + R++A R+
Sbjct: 192 -------VGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRL 244
Query: 227 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 286
YL P + + SL +KMS S + S I + D
Sbjct: 245 GYLK------------------PSSIHSI---FLPSLQGSQTKMSASVQN--SSIFVNDN 281
Query: 287 KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG-----KTKGEVAEECQNMN 341
++ I NKI + E + ++ +Q + + E+ ++ +
Sbjct: 282 EESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGE 341
Query: 342 WGT--FKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNV 396
+ K +L L++ Q E D V+A K+ + N
Sbjct: 342 MLSGEIKSILVQELVKLTKNHQKNREA------INDDVIAKFTNKSREQLLKLFINK 392
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 157 bits (399), Expect = 4e-44
Identities = 50/358 (13%), Positives = 102/358 (28%), Gaps = 73/358 (20%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQ-------ITLPYDTQQLSK---------- 119
+ +G P+ S+HLG+ + + + I L D + L K
Sbjct: 102 PFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKN 161
Query: 120 ATRETAAIYLACGIDNSKASVFVQSHVRAHV--ELMWLLSSATPIGWLNKMIQFKEKSHK 177
RE A +A G D +F E + +S + F +
Sbjct: 162 FARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDC- 220
Query: 178 AGGENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERV 226
+ + + + +P DQ + + R++A+++
Sbjct: 221 -------IGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKL 273
Query: 227 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 286
Y +P + +L +KMS S + + I + D
Sbjct: 274 KY--------------------SKPALLH-SRFFPALQGSTTKMSASDDT--TAIFMTDT 310
Query: 287 KDVIANKIKRCKTDSSAGLEFDNLE---RPECNNLLSIYQLISGKTKG--EVAEECQN-- 339
I KI + + E P+ + E ++ ++
Sbjct: 311 PKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGE 370
Query: 340 MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSA----YLDKVLADGAAKAADIADATL 393
+ G K L + L E + Q R ++ ++ K++ + T
Sbjct: 371 LLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTK 428
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 149 bits (377), Expect = 1e-40
Identities = 53/330 (16%), Positives = 106/330 (32%), Gaps = 66/330 (20%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQ---------------ITLPYDTQQLSKA 120
+ +G P+ ++H+G+ + I W+ + Q
Sbjct: 155 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 214
Query: 121 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 179
E A +ACG D +K +F + + + K + F + G
Sbjct: 215 AVENAKDIIACGFDINKTFIFSDLDYMGMSSGFY-----KNVVKIQKHVTFNQVKGIFGF 269
Query: 180 GENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNY 228
++ + +++P + A+ +P DQ + +TR++A R+ Y
Sbjct: 270 TDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY 329
Query: 229 LYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 288
P+P + + +L +KMS S P+ S I L D
Sbjct: 330 --------------------PKPALLHST-FFPALQGAQTKMSASDPN--SSIFLTDTAK 366
Query: 289 VIANKIKRCKTDSSA------GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN--M 340
I K+ + N + L+ + L ++ ++ + M
Sbjct: 367 QIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFF-LEDDDKLEQIRKDYTSGAM 425
Query: 341 NWGTFKPLLTDALIEHLHPIQVRYEEIMSD 370
G K L + L + Q R +E+ +
Sbjct: 426 LTGELKKALIEVLQPLIAEHQARRKEVTDE 455
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 140 bits (353), Expect = 5e-38
Identities = 36/326 (11%), Positives = 92/326 (28%), Gaps = 65/326 (19%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ----------------ITLPYDTQQLSKAT 121
I P + L Y+ + + SK +
Sbjct: 82 PTFIFIQKYPQKEVALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMS 141
Query: 122 RETAAIYLACGIDNSKASVFVQS-HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 180
+ LA G + K ++ + + L+ AT + F+ +
Sbjct: 142 NDLMKYILAFGFNEDKTFIYTDYQYFGKMYRTISLVEKATAYNVVQPFFNFEYSDN---- 197
Query: 181 ENVGVALLTYPVLMASDILLYQSDF---------VPVGEDQKQHLELTRELAERVNYLYG 231
+ L P +M + + V Q + ++A +N+
Sbjct: 198 ----IGKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLNF--- 250
Query: 232 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 291
+P + +++ L G++K + + I L D +
Sbjct: 251 -----------------IQPTV--LFHKMVPLLSGVTKFDIPSD--HNSILLSDNAKQVE 289
Query: 292 NKIKRCKTDSSAGLEFDNLE---RPECNNLLSIYQLISGKTKG--EVAEECQN--MNWGT 344
KI + ++ + + + + + + S +V E+ + G
Sbjct: 290 RKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGE 349
Query: 345 FKPLLTDALIEHLHPIQVRYEEIMSD 370
K +++ ++ + + + + I +
Sbjct: 350 LKKIVSASMKDFIVAYDAKKKPITTA 375
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 133 bits (336), Expect = 2e-35
Identities = 45/326 (13%), Positives = 84/326 (25%), Gaps = 64/326 (19%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQ----------------ITLPYDTQQLSKA 120
+ +G P+ ++H+G+ + + + +
Sbjct: 101 PFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAY 160
Query: 121 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 179
RE + G D +F H E L ++K I E G
Sbjct: 161 GRENIKDIVTLGFDPKLTYIFSNVEASHHFEENIL--------KISKTINLNEAIKVFGF 212
Query: 180 GENVGVALLTYPVLMASDILLYQSDF--------VPVGEDQKQHLELTRELAERVNYLYG 231
+ + + +P + F VP DQ L R+ A+ +
Sbjct: 213 DMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVPAAVDQDPFFRLARDKAKALGEKK- 271
Query: 232 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 291
P + + L KMS S P+ S I L D +D I
Sbjct: 272 -----------------PSSIYVS---LLPDLKGVNRKMSASDPN--SSIYLDDAQDTIR 309
Query: 292 NKIKRCKTDSSAGLEFDNLE---RPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGT 344
KI ++ E + + + + + +
Sbjct: 310 KKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKE 369
Query: 345 FKPLLTDALIEHLHPIQVRYEEIMSD 370
K + E + Q + + D
Sbjct: 370 MKEKCVVVIQEFVSRYQESRKRVTDD 395
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 95.6 bits (237), Expect = 1e-21
Identities = 61/361 (16%), Positives = 106/361 (29%), Gaps = 80/361 (22%)
Query: 78 KKRIVSGVQPT-GSIHLGNYLGAIKNWIALQ-----ITLPY------------DTQQLSK 119
I +G P+ G++HLG+ L I + + ++
Sbjct: 91 PIYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDS 150
Query: 120 ATRETAAIYLACGIDNSKASVFVQSH---VRAHVELMWLLSSATPIGWLNKMIQFKEKSH 176
TRE +ACG D K +F+ S ++ L+ PI L F ++
Sbjct: 151 YTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDAN 210
Query: 177 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 236
V +P + D +P + A+ V+ +K
Sbjct: 211 --------VGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTP 262
Query: 237 KLGGRGGAIFKVPEPL-----------IPPAGA--------------------------- 258
K + V E + +G
Sbjct: 263 KKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGK 322
Query: 259 RVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNL 318
+ L +KMS S P+ S I L D I NKI + S G + + R +L
Sbjct: 323 FLPGLQGSGTKMSASDPN--SAIYLTDTPAQIKNKIN--RYAFSGGRDTEEEHRAFGADL 378
Query: 319 LSI----YQLISGKTKGEVAE---ECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMS 369
Y + K E+ + + + + G K L L + R +++ +
Sbjct: 379 SVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDT 438
Query: 370 D 370
Sbjct: 439 T 439
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 76.0 bits (187), Expect = 2e-15
Identities = 62/347 (17%), Positives = 94/347 (27%), Gaps = 104/347 (29%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKN------------WIALQITLPYD-TQQLSKAT----- 121
++ G PTG H G ++ K +A D L
Sbjct: 41 KLYWGTAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLA-------DLHAFLDNMKAPLEV 93
Query: 122 -RETAAIYL--------ACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMI 169
A Y + + K V S + ++ LS+ +
Sbjct: 94 VNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAG 153
Query: 170 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 229
K N ++ L YP++ A D D G DQ++ L E + Y
Sbjct: 154 ADVVKQ----VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGYK 209
Query: 230 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 289
A P++P KMS S P S+I+LL+
Sbjct: 210 K------------RAHLM--NPMVPG--------LAQGGKMSASDP--NSKIDLLEEPKQ 245
Query: 290 IANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI--------SGKTKGEVAEECQNMN 341
+ KI F + E N LLS Q + G E +
Sbjct: 246 VKKKINSA---------FCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKF 296
Query: 342 WGTF----------------------KPLLTDALIEHLHPIQVRYEE 366
G K + DA+ E L PI+ +
Sbjct: 297 GGPITYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFAN 343
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 64.0 bits (156), Expect = 2e-11
Identities = 57/340 (16%), Positives = 108/340 (31%), Gaps = 90/340 (26%)
Query: 84 GVQPTGSIHLGNYLGAIK----------------NWIALQITLPY--DTQQLSKATRETA 125
G +P+G H+G + K W A I D + A R
Sbjct: 41 GYEPSGVAHIGWLVWMYKVKDLVEAGVDFSVLEATWHA-YINDKLGGDMDLIRAAARIVR 99
Query: 126 AIYLACGIDNSKASVFVQSHVRAH---VELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 182
+ A G+ + + + L+ ++ + + + + + +A
Sbjct: 100 RVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGR--RAEEAE 157
Query: 183 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY-------------L 229
V + L YP++ SDI D G DQ++ L R++AE++ L
Sbjct: 158 VDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSL 217
Query: 230 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 289
G + + G + KMSKS P ++ + ++D D
Sbjct: 218 QGPGRMEASQGEIDDVLAEV-------------------KMSKSKP--ETAVFVVDSDDD 256
Query: 290 IANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTF---- 345
I KI++ + ++ + N +L I + I G + +G
Sbjct: 257 IRRKIRKA---------YCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEYT 307
Query: 346 -------------------KPLLTDALIEHLHPIQVRYEE 366
K + ++LIE + PI+
Sbjct: 308 SYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLG 347
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 62.7 bits (153), Expect = 3e-11
Identities = 60/332 (18%), Positives = 101/332 (30%), Gaps = 94/332 (28%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIK----------------NWIALQITLPYDTQQLSKAT 121
+K G +P+G IHLG+YL K + A + + ++ K
Sbjct: 28 EKSAYIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIIILLADLAA-YLNQKGELDEIRKIG 86
Query: 122 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHK 177
++ A G+ +V + L L+ T + + ++ +
Sbjct: 87 DYNKKVFEAMGLKAK----YVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARE-- 140
Query: 178 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 237
EN VA + YP++ + D G +Q++ L REL
Sbjct: 141 --DENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIHMLARELLP------------- 185
Query: 238 LGGRGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 293
K P++ G DG KMS S + I + D + I K
Sbjct: 186 ---------KKVVCIHNPVLT--G------LDGEGKMSSSKGNF---IAVDDSPEEIRAK 225
Query: 294 IKRCKTDSSAGLEFDNLERPECNNLLSIYQLI--------------SGKTKGEVAEECQN 339
IK+ + E N ++ I + T E
Sbjct: 226 IKKA---------YCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESL 276
Query: 340 MNWGTF-----KPLLTDALIEHLHPIQVRYEE 366
K + + LI+ L PI+ R E
Sbjct: 277 FKNKELHPMYLKNAVAEELIKILEPIRKRLLE 308
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 61.9 bits (151), Expect = 8e-11
Identities = 59/331 (17%), Positives = 108/331 (32%), Gaps = 89/331 (26%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIK----------------NWIALQITLPYDTQQLSKATRE 123
R G +P+G IHLG+ + K + A + +++++
Sbjct: 34 RAYVGYEPSGEIHLGHMMTVQKLMDLQEAGFEIIVLLADIHA-YLNEKGTFEEIAEVADY 92
Query: 124 TAAIYLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 180
+++A G+D S+A + S R +V + ++ T + + + +
Sbjct: 93 NKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRR----K 148
Query: 181 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 240
E+ V+ + YP++ A DI D G DQ++ L RE R+ Y
Sbjct: 149 EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGY------------ 196
Query: 241 RGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 296
P P++ DG KMS S + I++ DP + + KI++
Sbjct: 197 ------SSPVCLHTPILVG--------LDG-QKMSSS---KGNYISVRDPPEEVERKIRK 238
Query: 297 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTF----------- 345
+ E N +L I + G++ E G
Sbjct: 239 A---------YCPAGVVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAED 289
Query: 346 -----------KPLLTDALIEHLHPIQVRYE 365
K + L L + R
Sbjct: 290 FKSGQLHPLDLKIAVAKYLNMLLEDARKRLG 320
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 59.0 bits (143), Expect = 8e-10
Identities = 60/332 (18%), Positives = 103/332 (31%), Gaps = 85/332 (25%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIK----------------NWIALQI---TLPYDTQQLSKA 120
+I G TG H+ ++ K + A + P++ +L +
Sbjct: 37 KIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHA-YLDNMKAPWELLELRVS 95
Query: 121 TRETA--AIYLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKS 175
E A+ + G+ K + + + ++ LSS K K
Sbjct: 96 YYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQ 155
Query: 176 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 235
E+ ++ L YP L A D + D G DQ++ + + Y
Sbjct: 156 ----VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGY------- 204
Query: 236 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 295
L+ P ++ G SKMS S S+I+LLD K+ + K+K
Sbjct: 205 -----------SKRVHLMNP----MVPGLTG-SKMSSSEEE--SKIDLLDRKEDVKKKLK 246
Query: 296 RCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTF---------- 345
+ F E N +LS + + K E G
Sbjct: 247 KA---------FCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEK 297
Query: 346 ------------KPLLTDALIEHLHPIQVRYE 365
K + AL + L PI+ ++
Sbjct: 298 DFAAEVVHPGDLKNSVEVALNKLLDPIREKFN 329
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 4e-06
Identities = 79/449 (17%), Positives = 126/449 (28%), Gaps = 163/449 (36%)
Query: 14 NSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVS--LSEP-TAP 70
+ LV L S L LIR + G N+ L P P
Sbjct: 178 QTYHVLVGDLIKFSAETLSE-------LIRTTLDAEKVFTQGL----NILEWLENPSNTP 226
Query: 71 ----VASSSSVKKRIVSGVQPT-GSIHLGNYLGAIKNWIALQITLPYD-TQQLSKATRET 124
+ S +S P G I L +Y+ K L T P + L AT +
Sbjct: 227 DKDYLLSIP------ISC--PLIGVIQLAHYVVTAK---LLGFT-PGELRSYLKGATGHS 274
Query: 125 AAIYLACGI--DNSKASVFVQSHVRAHVELM-WLLSSATPIGWLNKMIQFKEKSHKAGGE 181
+ A I +S S F S +A + ++ + IG + ++A
Sbjct: 275 QGLVTAVAIAETDSWES-FFVSVRKA-ITVLFF-------IGV---------RCYEA--- 313
Query: 182 NVGVALLTYPVLMASDILLYQSDFVPVGEDQ-----------KQHLELTRELAERVN--- 227
YP +L D + E ++ ++ + + N
Sbjct: 314 --------YPNTSLPPSIL--EDSLENNEGVPSPMLSISNLTQEQVQ---DYVNKTNSHL 360
Query: 228 --------YLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLS----KMSKSAP 275
L G K + G PP SL GL+ K +
Sbjct: 361 PAGKQVEISLVNGAKNLVVSG-------------PPQ-----SLY-GLNLTLRKAKAPSG 401
Query: 276 SDQSRINLLDPKDVIANK----------------IKRCKTD-SSAGLEFDN--LERPECN 316
DQSRI + K +N+ D + F+ ++ P
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP--- 458
Query: 317 NLLSIYQLISGK----TKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSA 372
+Y G G ++E + D +I V++E A
Sbjct: 459 ----VYDTFDGSDLRVLSGSISER------------IVDCIIRL----PVKWETTTQFKA 498
Query: 373 YLDKVLADGAAKAADIADATLNNVYQAMG 401
+L G A+ + T N G
Sbjct: 499 --THILDFGPGGASGLGVLTHRNK-DGTG 524
Score = 37.3 bits (86), Expect = 0.009
Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 68/176 (38%)
Query: 244 AIFKV--PEPLIPP----AG------------ARVMSLTDGLS-------KMSKSAPSDQ 278
A F+ + LIP AG A VMS+ + M + P D+
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 279 S-----RINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKG-- 331
+ ++P V +A + L+ + + + +T
Sbjct: 1802 LGRSNYGMIAINPGRV------------AASFSQEALQY--------VVERVGKRTGWLV 1841
Query: 332 EVAEECQNMNW--------GTFKPLLTDALIEHLHPIQVRYEEI--MSDSAYLDKV 377
E+ N N G + L D + L+ I+++ +I + S L++V
Sbjct: 1842 EIV----NYNVENQQYVAAGDLRAL--DTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 28.5 bits (63), Expect = 5.2
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 331 GEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY---EEIMSDSAYLDKVLADGAAKAAD 387
G V+ + G F +L L E + Y +I + +A L + K +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTE----FENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 388 IADATLNNVYQAMGFLRR 405
+ + N A +R
Sbjct: 122 L----IKNYITARIMAKR 135
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 1e-04
Identities = 68/430 (15%), Positives = 135/430 (31%), Gaps = 115/430 (26%)
Query: 36 CKTPGLIRQN----RNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSI 91
+ P ++ + R+ ++ F Y NVS +P + ++ + ++P ++
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPYLKL-------RQALLELRPAKNV 153
Query: 92 HLGNYLGAIKNWIALQITLPYDTQQLSKATRETAAIYLACGIDNSKASVF-VQSHVRAHV 150
+ LG+ K W+AL + L Y Q + +L NS +V + + +
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQC----KMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 151 ELMWL----LSSATP--IGWLNKMIQ--FKEKSHKAGGENVGVALLTYPVL--------- 193
+ W SS I + ++ K K ++ LL VL
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-------CLL---VLLNVQNAKAW 259
Query: 194 ----MASDILL---YQS--DFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGR 241
++ ILL ++ DF+ H +T E + L K+ L R
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL---LKY--LDCR 314
Query: 242 GGAIFKVPE------PL-IPPAGARV-----------MSLTDGLSKMSKSAPSDQSRINL 283
+P P + + D L+ + +S+ +N+
Sbjct: 315 ---PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS------LNV 365
Query: 284 LDPKDVIANKIKRCKTDSSAGLEF-DNLERPECNNLLSIY-QLISGKTKGEVAEECQNMN 341
L+P + ++ S F + P LLS+ + V +
Sbjct: 366 LEPAE-----YRKMFDRLSV---FPPSAHIPT--ILLSLIWFDVIKSDVMVVVNKLHK-- 413
Query: 342 WGTFKPLL---TDALIEHLHPIQVRYEEIMSDSAYLDKVLAD--GAAKAADIADATLNNV 396
L+ + I + + + + L + + D K D D +
Sbjct: 414 ----YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 397 ----YQAMGF 402
Y +G
Sbjct: 470 DQYFYSHIGH 479
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein;
periplasmic binding protein, MBP, maltotriose; HET: MLR;
1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Length = 382
Score = 29.3 bits (66), Expect = 2.4
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 358 HPIQVRYEEIMSDSAYLDKVLADGAA-KAADIADATLNNV--YQAMGFL 403
+ ++V + + K L + ADI + V G +
Sbjct: 28 YGVEVEVQYVNFQD-IKSKFLTAAPEGQGADIIVGAHDWVGELAVNGLI 75
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1
d.66.1.4 PDB: 1h3e_A*
Length = 432
Score = 28.1 bits (63), Expect = 5.0
Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 22/87 (25%)
Query: 188 LTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFK 247
L YP A D + ++D G DQ+ +L + RE+ YG
Sbjct: 173 LLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRA----YGQSP----------QVC 218
Query: 248 VPEPLIPPAGARVMSLTDGLSKMSKSA 274
PL+ DG KMSKS
Sbjct: 219 FLMPLLVG--------LDGREKMSKSL 237
>1z54_A Probable thioesterase; hypothetical protein, structural genom
NPPSFA, riken structural genomics/proteomics initiative;
2.10A {Thermus thermophilus} SCOP: d.38.1.1
Length = 132
Score = 27.1 bits (61), Expect = 5.7
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 354 IEHLHPIQVRYEE 366
+E + I+VRY E
Sbjct: 1 MESVTRIKVRYAE 13
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 27.9 bits (63), Expect = 6.6
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 377 VLADGAAKA--ADIADATLNNVYQAMGFLRR 405
++A G KA + L N+ A+ +L
Sbjct: 212 LVATGVYKARDIKAPGSGLGNIVAALDYLTT 242
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.393
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,009,380
Number of extensions: 353785
Number of successful extensions: 743
Number of sequences better than 10.0: 1
Number of HSP's gapped: 610
Number of HSP's successfully gapped: 41
Length of query: 405
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 309
Effective length of database: 4,021,377
Effective search space: 1242605493
Effective search space used: 1242605493
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)