RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015509
(405 letters)
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 326
Score = 268 bits (687), Expect = 2e-88
Identities = 149/340 (43%), Positives = 198/340 (58%), Gaps = 29/340 (8%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQ--------------ITLPYDTQQLSKATRET 124
K I SG+QP+G I +GNY+GA++ ++ LQ IT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 125 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 184
AA+YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS + G
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSAG 121
Query: 185 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 244
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N R G
Sbjct: 122 --LLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNK------------RYGE 167
Query: 245 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 304
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 305 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 364
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 365 EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 404
M LD+VL +GA KA +A + + QAMG R
Sbjct: 288 HHWMES-EELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 326
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 171 bits (434), Expect = 5e-50
Identities = 50/337 (14%), Positives = 99/337 (29%), Gaps = 64/337 (18%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQ----------------ITLPYDTQQLSKA 120
+ +G P+ ++H+G+ + I + Q
Sbjct: 74 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 133
Query: 121 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 180
E A +ACG D +K +F + I Q K
Sbjct: 134 AVENAKDIIACGFDINKTFIFSDLDY--MGMSSGFYKNVVKIQKHVTFNQVKGIFGF--T 189
Query: 181 ENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNYL 229
++ + +++P + A+ +P DQ + +TR++A R+ Y
Sbjct: 190 DSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYP 249
Query: 230 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 289
P L +L +KMS S P S I L D
Sbjct: 250 K------------------PALLHST---FFPALQGAQTKMSASDP--NSSIFLTDTAKQ 286
Query: 290 IANKIKRCKTDSSAGLEFDNLERPECN-----NLLSIYQLISGKTKGEVAEECQN--MNW 342
I K+ + ++ + + + L ++ ++ + M
Sbjct: 287 IKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLT 346
Query: 343 GTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLA 379
G K L + L + Q R +E+ + + + +
Sbjct: 347 GELKKALIEVLQPLIAEHQARRKEVTDE--IVKEFMT 381
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 151 bits (381), Expect = 6e-43
Identities = 46/337 (13%), Positives = 104/337 (30%), Gaps = 64/337 (18%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ---------------ITLPYDTQQLSKATR 122
+ +I G TG H+ ++ K L+ + +L +
Sbjct: 32 ELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRV 91
Query: 123 ET-----AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 177
A+ + G+ K + + E + + + + + + K
Sbjct: 92 SYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVK 151
Query: 178 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 237
E+ ++ L YP L A D + D G DQ++ + + Y
Sbjct: 152 Q-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKR------ 204
Query: 238 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 297
+ + GL+ S+ ++S+I+LLD K+ + K+K+
Sbjct: 205 -------------------VHLMNPMVPGLTGSKMSSSEEESKIDLLDRKEDVKKKLKKA 245
Query: 298 KTDS-----------SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN--MNWGT 344
+ + F + ++ ++ ++ G
Sbjct: 246 FCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGD 305
Query: 345 FKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADG 381
K + AL + L PI+ ++ ++ L K+ +
Sbjct: 306 LKNSVEVALNKLLDPIREKF-----NTPALKKLASAA 337
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 101 bits (252), Expect = 7e-25
Identities = 54/312 (17%), Positives = 101/312 (32%), Gaps = 60/312 (19%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQ----------------ITLPYDTQQLSKAT 121
+K G +P+G IHLG+YL IK I LQ + + ++ K
Sbjct: 28 EKSAYIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIG 86
Query: 122 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 181
++ A G+ + + ++ L+ T + + ++ E
Sbjct: 87 DYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMEL----IAREDE 142
Query: 182 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 241
N VA + YP++ +DI D G +Q++ L REL +
Sbjct: 143 NPKVAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVL------ 196
Query: 242 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 301
GL K + S + I + D + I KIK+ +
Sbjct: 197 -----------------------TGLDGEGKMSSSKGNFIAVDDSPEEIRAKIKKAYCPA 233
Query: 302 SA--------GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN--MNWGTFKPLLTD 351
++ ++ + E+ +N ++ K + +
Sbjct: 234 GVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMDLKNAVAE 293
Query: 352 ALIEHLHPIQVR 363
LI+ L PI+ R
Sbjct: 294 ELIKILEPIRKR 305
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
thermophilus [TaxId: 274]}
Length = 343
Score = 61.9 bits (149), Expect = 3e-11
Identities = 24/177 (13%), Positives = 50/177 (28%), Gaps = 26/177 (14%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKNW---------IALQITLPYDTQQLSKATRET--- 124
+ G PT +HLG+ + K + + S ++
Sbjct: 33 PLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPL 92
Query: 125 -------------AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQF 171
A + + S + ++ + + + +
Sbjct: 93 TLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLERE 152
Query: 172 KEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 228
K G + + L YP A D + ++D G DQ+ +L + RE+
Sbjct: 153 DFKKRYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQ 209
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 28.6 bits (63), Expect = 1.0
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 325 ISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHP 359
+ + + + +NM W L ++ L
Sbjct: 189 VVAPSGDNITHKSENMKWYNGPTLE--EYLDQLEL 221
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 28.2 bits (61), Expect = 1.7
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 78 KKRIV--SGVQPTGSIHLGNYLGAIKNWI 104
K++ V SG+ P+G +H+GN+ +I
Sbjct: 17 KEKYVVESGITPSGYVHVGNFRELFTAYI 45
>d1j5ya2 d.94.2.1 (A:68-174) Putative transcriptional regulator
TM1602, C-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 107
Score = 26.5 bits (59), Expect = 2.7
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 321 IYQLISG----KTKGEVAEECQNMNWGTFKPL--LTDALIEHLHPIQVRYEEIM 368
+Y I G ++ EV + M +PL L+ + HLH I+ EE M
Sbjct: 40 VYGEIRGIIDVSSEEEVLKFVNLMEMAKTEPLLTLSGGV--HLHTIEAPDEETM 91
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 26.7 bits (58), Expect = 4.3
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 87 PTGSIHLGNYLGAIKNWI 104
P+G +H G+ + A+ +++
Sbjct: 11 PSGELHFGSLIAALGSYL 28
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 25.9 bits (56), Expect = 9.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 87 PTGSIHLGNYLGAIKNWI 104
PTG H+G A+ N+
Sbjct: 10 PTGDPHVGTAYIALFNYA 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.393
Gapped
Lambda K H
0.267 0.0514 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,436,122
Number of extensions: 64422
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 10
Length of query: 405
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 318
Effective length of database: 1,213,086
Effective search space: 385761348
Effective search space used: 385761348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)