BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015510
         (405 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4IC1|A Chain A, Crystal Structure Of Sso0001
 pdb|4IC1|B Chain B, Crystal Structure Of Sso0001
 pdb|4IC1|C Chain C, Crystal Structure Of Sso0001
 pdb|4IC1|D Chain D, Crystal Structure Of Sso0001
 pdb|4IC1|F Chain F, Crystal Structure Of Sso0001
 pdb|4IC1|G Chain G, Crystal Structure Of Sso0001
 pdb|4IC1|H Chain H, Crystal Structure Of Sso0001
 pdb|4IC1|I Chain I, Crystal Structure Of Sso0001
 pdb|4IC1|J Chain J, Crystal Structure Of Sso0001
 pdb|4IC1|K Chain K, Crystal Structure Of Sso0001
          Length = 206

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 372 WKCRYCQFESVCPAVL 387
           W+C+YC F  +CPA L
Sbjct: 190 WECKYCIFSVICPAKL 205


>pdb|4F9I|A Chain A, Crystal Structure Of Proline Utilization A (Puta) From
           Geobacter Sulfurreducens Pca
 pdb|4F9I|B Chain B, Crystal Structure Of Proline Utilization A (Puta) From
           Geobacter Sulfurreducens Pca
          Length = 1026

 Score = 28.5 bits (62), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 228 DTKTRAQYTLPAESQKRNGRLQLMCYKYM-----WDNLAADNFPSMQFYDFFS 275
           D +TRA+Y L A    R    +L  ++ +     WD   AD   ++ F ++++
Sbjct: 588 DPRTRAEYLLKAAQAARKRLFELSAWQVLEIGKQWDQAYADVTEAIDFLEYYA 640


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,402,310
Number of Sequences: 62578
Number of extensions: 385818
Number of successful extensions: 758
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 757
Number of HSP's gapped (non-prelim): 2
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)