BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015510
(405 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FKK6|EXO5_ARATH Exonuclease V, chloroplastic OS=Arabidopsis thaliana GN=At5g60370
PE=2 SV=1
Length = 413
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 201/383 (52%), Positives = 265/383 (69%), Gaps = 26/383 (6%)
Query: 8 STQSQDVNSANVTPDIPIEIVSEEEMALIDAALAAPRCCSPSSSLSFA-SQLQRNA--RF 64
S QS V V P+IPIEIVSEEEMA++DAALAA R PS S + S++ +
Sbjct: 31 SPQSHHV----VFPEIPIEIVSEEEMAILDAALAASRSILPSVIRSVSPSRITAGGSPKT 86
Query: 65 IHSISFLSKRSFSGRTESDIEDLGHLGMTQKRNIIAKSLLDRFRKNRALSVTDVTDTEWC 124
I SI+ SKR S SDIE+ S L RFR+N+AL VTD+T TEWC
Sbjct: 87 IRSITLFSKRKLSAC--SDIEE---------------SYLHRFRRNQALGVTDLTGTEWC 129
Query: 125 EKKMEFNLLFGSKKVNKVMKVGRARHAELEKEVTEKVKVRVRSTEDIWAVKLFNSITGVN 184
EK+ME L FG +KVNK MKVG+ARH +LE+EV +KV+V+V S ED WA+KL NSI GVN
Sbjct: 130 EKQMENVLCFGRRKVNKAMKVGQARHLQLEEEVVKKVRVKVESNEDKWALKLLNSIAGVN 189
Query: 185 QLLFEGLTRELPILGFIKGVWMVGVIDEIQMPVKETARN--PILVDTKTRAQYTLPAESQ 242
Q LFEG TREL +LGF+ G W+VG+IDE++ E + + PIL+DTKTR + TLPAE Q
Sbjct: 190 QFLFEGRTRELLLLGFVGGQWIVGIIDELRKAYAEESSDSGPILIDTKTRLRDTLPAEPQ 249
Query: 243 KRNGRLQLMCYKYMWDNLAADNFPSMQFYDFFSLNSDCILSEEIIEKTSNAGFPAKTLGD 302
+RNGRLQLM YK +WD + + FP+ F+D+FSLN + +LS+++ + +NAG A+TL +
Sbjct: 250 RRNGRLQLMLYKLLWDTIVKEGFPTGPFFDYFSLNRNYVLSQDVRDHIANAGIKAQTLEE 309
Query: 303 LVKYFRNMWNMLPASHNQLLLRYEFQKDQSLLGEEKFAFDYDLFNSQIEVCLEFWKGERE 362
+V+Y+ N + MLP ++NQLLL+YEFQKDQS++ E +F D++ S+ +EFW+ ERE
Sbjct: 310 IVRYYENTFQMLPIANNQLLLKYEFQKDQSIIAEIRFNHDHEWVMSKYREVIEFWRNERE 369
Query: 363 ASFTPLEDRWKCRYCQFESVCPA 385
A +TP E+RWKCRYCQF CP
Sbjct: 370 AGYTPEEERWKCRYCQFAKSCPG 392
>sp|A2VDX7|EXO5_BOVIN Exonuclease V OS=Bos taurus GN=EXO5 PE=2 SV=2
Length = 370
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 147/295 (49%), Gaps = 12/295 (4%)
Query: 95 KRNIIAKSLLDRFRKNRALSVTDVTDTEWCEKKMEFNLLFG---SKKVNKVMKVGRARHA 151
KR + S ++RF + L VTD++ WCE++M + F + + + ++ G + H
Sbjct: 61 KRRLDVSSPMERFHL-KYLYVTDLSTQNWCEQQMVYGKEFSGFLTPEKSAILDTGASIHL 119
Query: 152 ELEKEVTEKVKVRVRSTEDIWAVKLFNSITGVNQLLFEGLTRELPILGFIKGVWMVGVID 211
E EV + V + + S ED WAVK N ++ + L EG RE P+ ++GV +VGVID
Sbjct: 120 ARELEVHDLVSIPITSKEDAWAVKFLNILSMIPTLQSEGRIREFPVFAEVEGVLLVGVID 179
Query: 212 EIQMPVKETARNPI-LVDTKTRAQYTLPAESQKRNGRLQLMCYKYMWDNLAADNFPSMQF 270
E+ TA + L + KTR LP+++QK+ Q+ YKY++D + +
Sbjct: 180 ELHY----TASGELELTELKTRGNPVLPSDAQKKKDYFQVSLYKYIFDAMVQGKVTAASL 235
Query: 271 YDFFSLNSDCILSEEIIEKTSNAGFPAKTLGDLVK--YFRNMWNMLPASHNQLLLRYEFQ 328
L+ + L ++ G+ K+LGDL++ + + LP + L + Y Q
Sbjct: 236 IHHTKLDPEKPLGPSVLRHAQQGGYSVKSLGDLIELVFLSLTLSDLPLI-DSLKIEYVHQ 294
Query: 329 KDQSLLGEEKFAFDYDLFNSQIEVCLEFWKGEREASFTPLEDRWKCRYCQFESVC 383
++LG E AF S+++ + +W G RE +E+ WKCR C + +C
Sbjct: 295 GTATVLGTEMVAFAEKEVRSKVQHYMTYWMGHREPQGVDVEEAWKCRMCNYADIC 349
>sp|Q9CXP9|EXO5_MOUSE Exonuclease V OS=Mus musculus GN=Exo5 PE=2 SV=1
Length = 373
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 143/288 (49%), Gaps = 12/288 (4%)
Query: 102 SLLDRFRKNRALSVTDVTDTEWCEKKMEFNL-LFGSKKVNK--VMKVGRARHAELEKEVT 158
S ++RF + L VTD+ WCE +M + L GS K V+ G + H E E+
Sbjct: 71 SPMERFHL-KYLYVTDLCTQNWCELQMVYGKELPGSLTPEKAAVLDTGASIHLAKELELH 129
Query: 159 EKVKVRVRSTEDIWAVKLFNSITGVNQLLFEGLTRELPILGFIKGVWMVGVIDEIQMPVK 218
+ V V + + ED WAVK N + + L EG RE P+ G ++G+++VGVIDE+
Sbjct: 130 DLVTVPIATKEDAWAVKFLNILAMIPALQSEGRVREFPVFGEVEGIFLVGVIDELHY--- 186
Query: 219 ETARNPI-LVDTKTRAQYTLPAESQKRNGRLQLMCYKYMWDNLAADNFPSMQFYDFFSLN 277
T++ + L + KTR + LP +QK+ Q+ YKY++D + L
Sbjct: 187 -TSKGELELAELKTRRRPVLPLPAQKKKDYFQVSLYKYIFDAMVQGKVTPASLIHHTKLC 245
Query: 278 SDCILSEEIIEKTSNAGFPAKTLGDLVK--YFRNMWNMLPASHNQLLLRYEFQKDQSLLG 335
D L ++ G K+LGDL++ + + LPA + L L Y Q+ ++LG
Sbjct: 246 LDKPLGPSVLRHARQGGVSVKSLGDLMELVFLSLTLSDLPAI-DTLKLEYIHQETATILG 304
Query: 336 EEKFAFDYDLFNSQIEVCLEFWKGEREASFTPLEDRWKCRYCQFESVC 383
E AF+ S+++ + +W G R+ +E+ WKCR C + +C
Sbjct: 305 TEIVAFEEKEVKSKVQHYVAYWMGHRDPQGVDVEEAWKCRTCDYVDIC 352
>sp|Q9H790|EXO5_HUMAN Exonuclease V OS=Homo sapiens GN=EXO5 PE=1 SV=1
Length = 373
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 142/295 (48%), Gaps = 12/295 (4%)
Query: 95 KRNIIAKSLLDRFRKNRALSVTDVTDTEWCEKKMEFNL---LFGSKKVNKVMKVGRARHA 151
KR + S ++RF + L VTD+ WCE + + F + + V+ G + H
Sbjct: 64 KRGLDILSPMERFHL-KYLYVTDLATQNWCELQTAYGKELPGFLAPEKAAVLDTGASIHL 122
Query: 152 ELEKEVTEKVKVRVRSTEDIWAVKLFNSITGVNQLLFEGLTRELPILGFIKGVWMVGVID 211
E E+ + V V V + ED WA+K N + + L EG RE P+ G +GV +VGVID
Sbjct: 123 ARELELHDLVTVPVTTKEDAWAIKFLNILLLIPTLQSEGHIREFPVFGEGEGVLLVGVID 182
Query: 212 EIQMPVKETARNPI-LVDTKTRAQYTLPAESQKRNGRLQLMCYKYMWDNLAADNFPSMQF 270
E+ TA+ + L + KTR + LP E+QK+ Q+ YKY++D +
Sbjct: 183 ELHY----TAKGELELAELKTRRRPMLPLEAQKKKDCFQVSLYKYIFDAMVQGKVTPASL 238
Query: 271 YDFFSLNSDCILSEEIIEKTSNAGFPAKTLGDLVK--YFRNMWNMLPASHNQLLLRYEFQ 328
L + L ++ GF K+LGDL++ + + LP + L + Y Q
Sbjct: 239 IHHTKLCLEKPLGPSVLRHAQQGGFSVKSLGDLMELVFLSLTLSDLPVI-DILKIEYIHQ 297
Query: 329 KDQSLLGEEKFAFDYDLFNSQIEVCLEFWKGEREASFTPLEDRWKCRYCQFESVC 383
+ ++LG E AF ++++ + +W G RE +E+ WKCR C + +C
Sbjct: 298 ETATVLGTEIVAFKEKEVRAKVQHYMAYWMGHREPQGVDVEEAWKCRTCTYADIC 352
>sp|F1Q514|EXO5_DANRE Exonuclease V OS=Danio rerio GN=exo5 PE=3 SV=1
Length = 394
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 139/288 (48%), Gaps = 11/288 (3%)
Query: 102 SLLDRFRKNRALSVTDVTDTEWCEKKMEFNLL---FGSKKVNKV-MKVGRARHAELEKEV 157
S + RFRK LSVT + D WCE K +NLL K++ + +++G+ H E E+
Sbjct: 91 SPMQRFRKQH-LSVTLLCDQTWCEMKSVYNLLKPHIKRKEMQRTEVQIGQEIHLSRELEI 149
Query: 158 TEKVKVRVRSTEDIWAVKLFNSITGVNQLLFEGLTRELPILGFIKGVWMVGVIDEIQMPV 217
+ V V +R+ ED AVKL N + + L RE P+ G +GV+++GVIDE+
Sbjct: 150 QDVVPVDIRTREDGEAVKLLNMLHMIPLLEAGQRVREFPVFGVQEGVFIMGVIDELMYNQ 209
Query: 218 KETARNPILVDTKTRAQYTLPAESQKRNGRLQLMCYKYMWDNLAADNFPSMQFYDFFSLN 277
K +L + KTR Q +LP+ +Q + Q+ YK ++D L +D L
Sbjct: 210 KGEL---VLNELKTRRQNSLPSSAQDKVNCFQVGLYKLLFDGLVRGEMKKNHIFDHLKLR 266
Query: 278 SDCILSEEIIEKTSNAGFPAKTLGDLVKYFRNMWNM--LPASHNQLLLRYEFQKDQSLLG 335
S IL + N G A+T +LV+ + LP + L + Y Q +G
Sbjct: 267 SAQILGAGVQAHAKNLGVHARTFEELVETLLITVSCSDLPCI-DLLQIEYFHQGSNGPIG 325
Query: 336 EEKFAFDYDLFNSQIEVCLEFWKGEREASFTPLEDRWKCRYCQFESVC 383
FD +++ L +W G+RE +E+ WKCR C +E +C
Sbjct: 326 TRVAPFDEAQIRGELQAYLSYWTGQREPKGVDIEEAWKCRSCLYEEIC 373
>sp|Q9Y7L4|EXO5_SCHPO Probable exonuclease V, mitochondrial OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=exo5 PE=3 SV=1
Length = 409
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 97/351 (27%), Positives = 148/351 (42%), Gaps = 61/351 (17%)
Query: 102 SLLDRFRKNRA-LSVTDVTDTEWCEKKMEFNLLFGSKKVNKVMKVGRARHAELEKEVTEK 160
SL FRK++ L+VTD+ WCE + E+ LL KK M+ G H LE E +
Sbjct: 63 SLFQLFRKHKGYLNVTDLVLPLWCEVQHEYYLLRRIKKKTPKMERGIKLHQILEYETSPP 122
Query: 161 VKVRV---RSTEDIWAVKLFNSITGVNQLLFEGLTRELPILGFIKGVWMVGVIDEIQM-- 215
+ RV S E+ WA++L + G+ L G+TRE PI G+ K + G+IDEI +
Sbjct: 123 SERRVLDRTSKEEPWALRLLRQLEGIMLLQKNGITREFPIWGYYKESSIFGIIDEISLNN 182
Query: 216 PVKETARNPI------------LVDTKTRAQYTLPAESQKRNGRLQLMCYKYMWDNLAAD 263
P K + I VD KTR P SQ + ++QLM Y +++ N
Sbjct: 183 PSKSNFNSDIRNYFNFKMYDLSFVDNKTRFSSRKPGASQILSSKVQLMYYVHLFLNY--- 239
Query: 264 NFPSM---------------------------QFYDFFSLNSDCILSEEIIEKT--SNAG 294
FPS+ F SL+ L + +E++ S
Sbjct: 240 -FPSLGEKQQSIFRDISPTYSNRLHSQSHWWNMFLSQLSLDGTKDLGPKFLEQSILSIPD 298
Query: 295 FPAKTLGDLVKYFRNMWNMLPASHNQLLLR---------YEFQKDQSLLGEEKFAFDYDL 345
P ++ ++ AS +L LR Y K ++ ++KF+F L
Sbjct: 299 IPEDVFAG-HNSLNGLYALVFASAKKLHLRLTDDNLTIAYRNDKTGEVVYKDKFSFSNKL 357
Query: 346 FNSQIEVCLEFWKGEREASFTPLEDRWKCRYCQFESVCPAVLKPEITPIPS 396
+ +FW RE P E+ +KCR C+F+ C + K + P+ S
Sbjct: 358 LEASYTKAYQFWHNLREPEGVPAEEVYKCRSCEFQKECWWLKKKQYYPLSS 408
>sp|C4YLG6|EXO5_CANAW Exonuclease V, mitochondrial OS=Candida albicans (strain WO-1)
GN=EXO5 PE=3 SV=1
Length = 611
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 323 LRYEFQKDQSLLGEEKFAFDYDLFNSQIEVCLEFWKGEREASFTPLEDRWKCRYCQFESV 382
+ Y + K LL E+ + +++ F +++E +FW GERE P ED +C YC+F+S
Sbjct: 520 VEYRYNKTSELLSEKVYDYNFSEFQAEVESASKFWNGEREV--IPTEDLSRCSYCEFQSK 577
Query: 383 C 383
C
Sbjct: 578 C 578
>sp|Q59ZZ6|EXO5_CANAL Exonuclease V, mitochondrial OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=DEM1 PE=3 SV=1
Length = 628
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 323 LRYEFQKDQSLLGEEKFAFDYDLFNSQIEVCLEFWKGEREASFTPLEDRWKCRYCQFESV 382
+ Y + K LL E+ + +++ F +++E +FW GERE P ED +C YC+F+S
Sbjct: 537 VEYRYNKTSELLSEKVYDYNFSEFQAEVESASKFWNGEREV--IPTEDLSRCSYCEFQSK 594
Query: 383 C 383
C
Sbjct: 595 C 595
>sp|B9WLF5|EXO5_CANDC Exonuclease V, mitochondrial OS=Candida dubliniensis (strain CD36 /
ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841)
GN=EXO5 PE=3 SV=1
Length = 624
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 323 LRYEFQKDQSLLGEEKFAFDYDLFNSQIEVCLEFWKGEREASFTPLEDRWKCRYCQFESV 382
+ Y K LL E + +D+ F ++E +FW GEREA P ED +C +C+F+S
Sbjct: 533 VEYRLNKTSQLLSENVYEYDFSEFQVEVESASKFWNGEREA--VPTEDLSRCSFCEFQSK 590
Query: 383 C 383
C
Sbjct: 591 C 591
>sp|Q6R7D4|Y095_OSHVF Uncharacterized protein ORF95 OS=Ostreid herpesvirus 1 (isolate
France) GN=ORF95 PE=4 SV=1
Length = 310
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 141 KVMKVGRARHAELEKEVTEKVKVRVRSTEDIWAVKLFNSITGVNQLLFEGLTRELPILGF 200
++M +G H+ E + E + + + D+ ++L N+I+ +NQL G ELPI
Sbjct: 44 EIMDIGIEIHSICETDEKEYIDIDYCTEADLKIIRLANTISLLNQLHVAGRVCELPIKTL 103
Query: 201 IKGVWMVGVIDEI 213
+ G + G+ID I
Sbjct: 104 VHGTSLRGIIDRI 116
>sp|C5DXZ1|EXO5_ZYGRC Exonuclease V, mitochondrial OS=Zygosaccharomyces rouxii (strain
ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229)
GN=EXO5 PE=3 SV=1
Length = 543
Score = 39.3 bits (90), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 279 DCILSEEIIEKTSNAGFP-AKTLGDLVKYFR----NMWNML-PASHNQLLLRYEFQKDQS 332
D I +I+K S+ P AK + +KYF M++ L P N+L++ Y + D
Sbjct: 411 DIITDARVIQKYSDFFEPWAKPVT--LKYFAARLAQMYHHLRPLLSNKLMIEYYYNGDN- 467
Query: 333 LLGEEKFAFDYDLFNSQIEVCLEFWKGEREASFTPLEDRWK-----CRYCQFESVC 383
F FD L +FW G+R+ P+ K C+YC +ESVC
Sbjct: 468 -FHNIIFEFDPKLLRESSSDSAKFWFGQRD--IEPISRNLKNFLTFCKYCDYESVC 520
>sp|A3M0E6|EXO5_PICST Exonuclease V, mitochondrial OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=EXO5 PE=3 SV=3
Length = 573
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 107 FRKNRALSVTDVTDTEWCEKKMEFNLLFGSK--KVNKVMKVGRARHAELEKEVTEKVKVR 164
++++ LSVT + WCE + + GS KV + G RH+ELE E+ + + +
Sbjct: 73 YKRSPRLSVTKLLTDRWCELSEYYTIYAGSPQFKVTNAITQGLERHSELEYELHQPIDIS 132
Query: 165 V 165
+
Sbjct: 133 L 133
>sp|Q6CVT0|EXO5_KLULA Exonuclease V, mitochondrial OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=EXO5 PE=3 SV=1
Length = 552
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 313 MLPASHNQLLLRYEFQKDQSLLGEEKFAFDYDLFNSQIEVCLEFWKGEREASFTPLEDRW 372
+LP N L++ Y + D + KF +D L + +FW G+R S P+
Sbjct: 458 LLPLLSNDLMIEY-YTGDYKFYTD-KFQYDSALLKQECHSSSQFWFGKR--SVEPIVPTK 513
Query: 373 K-----CRYCQFESVC 383
K C+YC F VC
Sbjct: 514 KNLVTFCKYCDFHDVC 529
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 85/242 (35%), Gaps = 84/242 (34%)
Query: 97 NIIAKSLLD-----RFRKNRALSVTDVTDTEWCEKKMEFNL-----LFGSKKVNKVMKVG 146
++ +K++LD +F LSVT + WCE +++ +F ++ +KVG
Sbjct: 97 DVYSKTVLDEDGNIKFAGTERLSVTKLLTKRWCELNQMYDIYSRLPIFEHRQ----LKVG 152
Query: 147 RARHAELEKEVT---------------EKVKVRVRSTEDIWAVKLFNSITGVNQLLFEGL 191
+ H +LEK + E + D W F I + L G
Sbjct: 153 KVEHEKLEKAIHGVAPAVEDFMETYEWELAEDDTHQLADNW----FQCIHRLLTLFSSGE 208
Query: 192 TRELPILGFI---------------KGVWMVGVIDEI----------------------- 213
RE+ G+I + + + G+ID +
Sbjct: 209 AREILCHGYIDSRSCQLIEGQVKDDRDILISGIIDHVVLFHVNNNKPKSLEPALREKNGF 268
Query: 214 -----------QMPVKETARNPILVDTKTRAQYTLPAE-SQKRNGRLQLMCYKYMWDNLA 261
+P E + + D KTR + +P S R +LQ+M Y++ +NL
Sbjct: 269 DLLKIISFLGDTIPQAEDLKIAV-GDVKTRPRAIVPNHASVVRASKLQVMYYRFFLENLG 327
Query: 262 AD 263
D
Sbjct: 328 KD 329
>sp|Q6BKP5|EXO5_DEBHA Exonuclease V, mitochondrial OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=EXO5 PE=3 SV=2
Length = 630
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 113 LSVTDVTDTEWCEKKMEFNLLFGS--KKVNKVMKVGRARHAELEKEVTEKVKVR--VRST 168
LSVT + +WCE + + + GS KK K MK+G H +LE E + V R T
Sbjct: 139 LSVTKLLTFQWCELREFYTIFSGSPVKKETKEMKLGTEAHLKLELETHNLIDVEDIERIT 198
Query: 169 EDIWAVKLFNSITGVNQL 186
++ K+ +S +N L
Sbjct: 199 DEFVEKKIDSSKRHINTL 216
>sp|Q1AUH1|UVRC_RUBXD UvrABC system protein C OS=Rubrobacter xylanophilus (strain DSM
9941 / NBRC 16129) GN=uvrC PE=3 SV=1
Length = 611
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 12 QDVNSANVTPDIPIEIVSEEEMALIDAALAAPRCCSPSSS-LSFASQLQRNARFIHSISF 70
+ + S PDIP+ +++ E + + P +P S+ L LQR H +
Sbjct: 487 EGLGSGGRLPDIPVRALAKREEEVFEPGRPGPVVLAPDSAELRL---LQRVRDEAHRFAN 543
Query: 71 LSKRSFSGR--TESDIEDLGHLGMTQKRNII 99
R GR T S ++DL +G +KR I+
Sbjct: 544 AYHRKLRGRAMTASVLDDLPGVGPVRKRRIL 574
>sp|P57441|SYN_BUCAI Asparagine--tRNA ligase OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=asnS PE=3 SV=1
Length = 466
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 355 EFWKGEREASFTPLEDRWKCRYCQFESVCPAVLKPEITPI 394
EFW E E++FT L D C + VC ++LK IT I
Sbjct: 246 EFWMLEVESAFTDLNDISDFAECMLKYVCKSLLKKCITDI 285
>sp|A1D405|RRP3_NEOFI ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3
PE=3 SV=1
Length = 472
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 17/172 (9%)
Query: 169 EDIWAVKLFNSITGVNQLLFEGLTRELPILGFIKGVWMVGVIDEIQMPVKETARNPILVD 228
+DI+ V L N G + ++F E + F+ G I + + ++AR L
Sbjct: 279 KDIYLVYLLNEFVGQSAIIFTRTVHETQRISFLLRSLGFGAI-PLHGQLSQSARLGALGK 337
Query: 229 TKTRAQYTLPAESQKRNGRLQLMCYKYMWDNLAADNFPSMQFYDFFSLNSDCILSEEIIE 288
++R++ L A G + PS+ F L +D +
Sbjct: 338 FRSRSRDILVATDVAARGL----------------DIPSVDVVLNFDLPTDSKTYVHRVG 381
Query: 289 KTSNAGFPAKTLGDLVKYFRNMWNMLPASHNQLLLRYEFQKDQSLLGEEKFA 340
+T+ AG + + +Y +W + + + L YE +KD+ ++ E+
Sbjct: 382 RTARAGKSGVAISFVTQYDVEIWLRIEGALGKKLKEYELEKDEVMVLAERVG 433
>sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rrp3
PE=3 SV=1
Length = 472
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 17/172 (9%)
Query: 169 EDIWAVKLFNSITGVNQLLFEGLTRELPILGFIKGVWMVGVIDEIQMPVKETARNPILVD 228
+DI+ V L N G + ++F E + F+ G I + + ++AR L
Sbjct: 279 KDIYLVYLLNEFVGQSTIIFTRTVHETQRISFLLRSLGFGAI-PLHGQLSQSARLGALGK 337
Query: 229 TKTRAQYTLPAESQKRNGRLQLMCYKYMWDNLAADNFPSMQFYDFFSLNSDCILSEEIIE 288
++R++ L A G + PS+ F L +D +
Sbjct: 338 FRSRSRDILVATDVAARGL----------------DIPSVDVVLNFDLPTDSKTYVHRVG 381
Query: 289 KTSNAGFPAKTLGDLVKYFRNMWNMLPASHNQLLLRYEFQKDQSLLGEEKFA 340
+T+ AG + + +Y +W + + + L YE +KD+ ++ E+
Sbjct: 382 RTARAGKSGVAISFVTQYDVEIWLRIEGALGKKLKEYELEKDEVMVLAERVG 433
>sp|C5DIF1|EXO5_LACTC Exonuclease V, mitochondrial OS=Lachancea thermotolerans (strain
ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=EXO5 PE=3 SV=1
Length = 552
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 339 FAFDYDLFNSQIEVCLEFWKGEREASFTPLEDRWK-----CRYCQFESVC 383
F+FD + Q +FW G+R + P++ K C+YC +ESVC
Sbjct: 473 FSFDAEELERQSFDSAQFWFGKR--AIEPIKPNMKNLQTYCKYCDYESVC 520
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,780,927
Number of Sequences: 539616
Number of extensions: 5727631
Number of successful extensions: 13861
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 13817
Number of HSP's gapped (non-prelim): 35
length of query: 405
length of database: 191,569,459
effective HSP length: 120
effective length of query: 285
effective length of database: 126,815,539
effective search space: 36142428615
effective search space used: 36142428615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)