Query 015510
Match_columns 405
No_of_seqs 141 out of 206
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:59:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09810 Exo5: Exonuclease V - 100.0 3.8E-83 8.2E-88 637.0 28.0 285 102-386 1-322 (322)
2 KOG4760 Uncharacterized conser 100.0 3.3E-58 7E-63 444.3 16.7 319 14-393 32-354 (365)
3 PF12705 PDDEXK_1: PD-(D/E)XK 99.8 6.2E-20 1.3E-24 168.4 3.4 215 112-384 1-257 (257)
4 TIGR00372 cas4 CRISPR-associat 99.6 8.8E-15 1.9E-19 132.5 13.0 173 113-384 1-177 (178)
5 TIGR03623 probable DNA repair 99.4 2.3E-12 4.9E-17 143.8 11.4 139 110-256 595-781 (874)
6 TIGR02774 rexB_recomb ATP-depe 99.3 5E-11 1.1E-15 135.8 18.0 250 111-389 743-1052(1076)
7 PHA01622 CRISPR-associated Cas 99.3 1.4E-10 3E-15 109.6 17.2 181 102-383 10-199 (204)
8 PHA00619 CRISPR-associated Cas 99.3 1.4E-10 3E-15 109.3 16.3 176 110-386 20-200 (201)
9 TIGR02773 addB_Gpos ATP-depend 99.1 1.3E-09 2.8E-14 125.3 18.8 149 110-259 780-985 (1158)
10 PF01930 Cas_Cas4: Domain of u 99.1 4.8E-10 1E-14 100.8 10.9 156 114-384 1-161 (162)
11 TIGR02786 addB_alphas double-s 99.1 3.3E-10 7.2E-15 128.7 9.8 144 110-259 746-926 (1021)
12 COG2887 RecB family exonucleas 99.0 2E-09 4.3E-14 105.7 11.2 136 113-254 1-173 (269)
13 PF12684 DUF3799: PDDEXK-like 98.6 1.4E-07 2.9E-12 91.3 7.4 140 112-261 2-172 (237)
14 COG3857 AddB ATP-dependent nuc 98.5 1E-06 2.3E-11 98.6 12.3 154 107-263 746-954 (1108)
15 TIGR02784 addA_alphas double-s 98.2 6.9E-06 1.5E-10 94.8 10.5 117 141-262 984-1122(1141)
16 COG1468 CRISPR-associated prot 98.1 1.4E-05 3E-10 75.2 10.0 167 111-384 14-187 (190)
17 TIGR01896 cas_AF1879 CRISPR-as 97.8 0.00032 6.9E-09 69.3 13.5 200 111-383 33-270 (271)
18 KOG4760 Uncharacterized conser 97.7 3.7E-07 8.1E-12 90.2 -9.0 178 43-264 70-250 (365)
19 PRK13909 putative recombinatio 97.6 0.00021 4.6E-09 81.0 9.2 107 140-261 764-888 (910)
20 TIGR03491 RecB family nuclease 97.5 0.0018 3.9E-08 68.2 13.6 188 113-384 1-200 (457)
21 TIGR02785 addA_Gpos recombinat 97.2 0.0011 2.4E-08 77.5 8.9 121 141-266 1058-1217(1232)
22 COG1074 RecB ATP-dependent exo 96.5 0.0079 1.7E-07 70.1 9.0 59 202-264 1057-1121(1139)
23 PF06023 DUF911: Archaeal prot 96.5 0.046 1E-06 54.7 12.7 135 111-260 43-219 (289)
24 PF10926 DUF2800: Protein of u 96.4 0.057 1.2E-06 55.9 13.5 136 112-260 3-159 (372)
25 PRK09709 exonuclease VIII; Rev 95.9 0.018 3.9E-07 64.4 7.3 153 103-262 615-805 (877)
26 KOG1805 DNA replication helica 95.6 0.051 1.1E-06 61.7 9.2 214 110-389 182-454 (1100)
27 TIGR00609 recB exodeoxyribonuc 92.3 0.21 4.6E-06 58.2 5.9 60 204-267 976-1044(1087)
28 COG2251 Predicted nuclease (Re 91.3 0.43 9.4E-06 50.4 6.2 133 112-260 2-151 (474)
29 PF08696 Dna2: DNA replication 91.0 0.16 3.4E-06 48.4 2.5 49 110-158 57-106 (209)
30 PRK10876 recB exonuclease V su 90.7 0.54 1.2E-05 55.4 7.1 58 206-267 1062-1128(1181)
31 PRK04247 hypothetical protein; 72.8 7 0.00015 38.4 5.4 85 185-296 142-229 (238)
32 PF01939 DUF91: Protein of unk 66.5 14 0.0003 36.1 5.9 67 175-260 108-177 (228)
33 PF07708 Tash_PEST: Tash prote 45.0 6.8 0.00015 23.9 -0.1 12 22-33 7-18 (19)
34 PRK14686 hypothetical protein; 31.9 74 0.0016 27.7 4.3 26 207-236 35-60 (119)
35 PRK14682 hypothetical protein; 31.4 72 0.0016 27.8 4.1 29 207-239 35-63 (117)
36 PF13366 PDDEXK_3: PD-(D/E)XK 30.8 2.2E+02 0.0049 25.0 7.1 60 184-257 33-96 (118)
37 PRK14684 hypothetical protein; 30.5 79 0.0017 27.7 4.2 27 207-237 36-62 (120)
38 PRK14688 hypothetical protein; 30.0 73 0.0016 28.0 3.9 27 207-237 36-62 (121)
39 PRK14680 hypothetical protein; 29.0 83 0.0018 28.2 4.2 27 207-237 36-62 (134)
40 TIGR00252 conserved hypothetic 28.5 97 0.0021 27.1 4.4 27 207-237 36-62 (119)
41 PRK14681 hypothetical protein; 27.6 1.1E+02 0.0023 28.3 4.7 28 207-237 73-100 (158)
42 PRK12497 hypothetical protein; 27.3 80 0.0017 27.4 3.7 27 207-237 36-62 (119)
43 PRK14679 hypothetical protein; 25.7 66 0.0014 28.6 2.9 28 207-238 45-72 (128)
44 PRK14675 hypothetical protein; 25.6 1.6E+02 0.0034 26.0 5.3 40 185-236 21-63 (125)
45 PF04369 Lactococcin: Lactococ 24.1 42 0.00091 26.3 1.2 18 21-38 3-20 (60)
46 PRK14678 hypothetical protein; 23.0 92 0.002 27.3 3.3 29 207-240 36-64 (120)
47 COG1637 Predicted nuclease of 22.7 2.6E+02 0.0057 27.8 6.6 66 175-259 133-201 (253)
48 PF03670 UPF0184: Uncharacteri 22.6 1.2E+02 0.0026 25.3 3.6 37 1-42 1-37 (83)
49 PF02021 UPF0102: Uncharacteri 21.2 1.6E+02 0.0034 24.4 4.2 28 207-238 26-53 (93)
50 KOG4359 Protein kinase C inhib 20.8 33 0.00072 31.3 0.0 20 362-381 21-40 (166)
51 PF13909 zf-H2C2_5: C2H2-type 20.5 39 0.00084 20.6 0.3 11 372-382 1-11 (24)
52 PRK14685 hypothetical protein; 20.1 1.5E+02 0.0032 28.0 4.2 27 207-237 72-98 (177)
No 1
>PF09810 Exo5: Exonuclease V - a 5' deoxyribonuclease; InterPro: IPR019190 Members of this family of proteins are thought to be involved in cellular morphology, though little else is known about them. Mutation of the Saccharomyces cerevisiae (Baker's yeast) gene results in a number of features that include aberrant mitochondria and fragmentation of the nucleus [].
Probab=100.00 E-value=3.8e-83 Score=636.96 Aligned_cols=285 Identities=38% Similarity=0.699 Sum_probs=270.3
Q ss_pred chHHHhhc--CCCccccccCCccccccceeeeeec-CCccccHHHHHHHHHHHHHHHhhccceeeeeccchhHHHHHHHH
Q 015510 102 SLLDRFRK--NRALSVTDVTDTEWCEKKMEFNLLF-GSKKVNKVMKVGRARHAELEKEVTEKVKVRVRSTEDIWAVKLFN 178 (405)
Q Consensus 102 Spl~rfr~--k~~LSVTdL~~~~WCElq~~Y~l~~-g~~~~t~am~~Gt~iH~~LE~e~~~~v~v~i~t~ed~wa~klln 178 (405)
||++|||+ +++||||||+++.|||+|++|+++. |.+.+|+||++|+++|++||+|+|+.|+|+|.++||.||++|+|
T Consensus 1 spl~rfr~~~~~~lsVT~l~~~~WCE~q~~y~l~~~~~~~~t~~m~~G~~~H~~LE~evh~~v~v~v~t~eD~~alrl~N 80 (322)
T PF09810_consen 1 SPLERFRRPPKPRLSVTDLLTQSWCELQYEYDLYSSGRKRRTKAMKQGTKIHQKLEREVHPPVEVEVTTKEDAWALRLLN 80 (322)
T ss_pred ChhHHhhcCCCCCceeecccchhhhhhhhhhhhhccCcccCCHHHHHHHHHHHHHHHhhccceeeeeCChHHHHHHHHHH
Confidence 79999998 8899999999999999999999999 77779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHcCcEEEEEEEEEECCEEEEEEEeEEeCCCCCCC---------------CCcEEEeecccCCCCCCChhhc
Q 015510 179 SITGVNQLLFEGLTRELPILGFIKGVWMVGVIDEIQMPVKETA---------------RNPILVDTKTRAQYTLPAESQK 243 (405)
Q Consensus 179 ~i~~l~~L~~~G~~REl~V~G~i~G~~v~GIIDeL~~~~~~~~---------------~~l~I~D~KTR~~~~lP~~~~~ 243 (405)
+|++|++|+++|++||++|||+++|++|+||||+|.+.+.+.. .+++|+|+|||+++++|++++.
T Consensus 81 ~i~~L~~L~~~G~tREl~V~G~v~g~lV~GIIDeL~~~~~~~~~~~~~~~~~~~~~~~~~i~IsDvKTR~~~~lPs~~~~ 160 (322)
T PF09810_consen 81 IIQGLRTLRQTGLTRELPVWGFVDGVLVSGIIDELSLENPDPELEESALSSYSDFEISKEIYISDVKTRSSRSLPSQSQV 160 (322)
T ss_pred HHHHHHHHHhcCeeEEEEEEEeECCEEEEEEEeecccCCCCccccccccccccccccccceEEEeccccccCCCCchhhh
Confidence 9999999999999999999999999999999999999766311 2899999999999999999999
Q ss_pred cchhhHHHHHHHHHHHhhcCCCCchhhhhhcCCCCCCCCCHHHHHhhhcC-----------------CCCCCCHHHHHHH
Q 015510 244 RNGRLQLMCYKYMWDNLAADNFPSMQFYDFFSLNSDCILSEEIIEKTSNA-----------------GFPAKTLGDLVKY 306 (405)
Q Consensus 244 ~~~~lQLmlY~~ll~~L~~~~~~~~~~~~~~gLdpd~~~S~~~~~~~~~i-----------------Gf~~~tl~dllry 306 (405)
+++++||||||+||++|+.++++++++|++|||||++|||+.|+++++.+ +..+.||.+|+.+
T Consensus 161 ~~aklQlmlY~~~l~~L~~~~~~~~~~~~~~~Ld~~~p~S~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~tL~~l~~~ 240 (322)
T PF09810_consen 161 RSAKLQLMLYRRFLDDLASGKFDYEKLFERYGLDPDKPFSDEFLAQIGRLNDEPSSSSDSDSIEAEELLKYNTLRSLWAL 240 (322)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcCHHHHHHHcCCCCCCCCCHHHHHHHhhccCCcccccccccccccccccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999986433 4556789999999
Q ss_pred HHHHhhh--CCCCCCceEEEEEEccCCCeeeeeeeecCHHHHHHHHHhhhhhhccccccCCCCCCCcccCCCCCCCCCCC
Q 015510 307 FRNMWNM--LPASHNQLLLRYEFQKDQSLLGEEKFAFDYDLFNSQIEVCLEFWKGEREASFTPLEDRWKCRYCQFESVCP 384 (405)
Q Consensus 307 ~~~~~~~--lP~~~~~L~IeY~~~~d~~~~~~~~f~yd~~~L~~~l~~~~~fW~G~Re~~~V~~ee~~KCk~CeF~~~C~ 384 (405)
+.+.++. +|.+++.|.|+|+++++|++||++.|.||+++|+.+++++++||+|+|+|+||+++++|||+||||++.|+
T Consensus 241 ~~~~~~~~~lp~~s~~l~veY~~~~~~~~~~~~~f~yd~~~L~~~l~~~~~fW~G~R~p~gV~~ee~~KC~~CeF~~~C~ 320 (322)
T PF09810_consen 241 LQQEFRKTFLPLLSDELTVEYYHQGDGSIFGTKSFPYDPDELDSYLEDSLSFWFGEREPEGVPIEEAWKCRYCEFRDVCE 320 (322)
T ss_pred HHHHhhhhccccccccccceeecCCCCCeeeeEEEEeCHHHHHHHHHHHhHHhCCCCCCCCCCHHHcCCCCCCCCCCCCC
Confidence 9888886 88899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cc
Q 015510 385 AV 386 (405)
Q Consensus 385 w~ 386 (405)
||
T Consensus 321 WR 322 (322)
T PF09810_consen 321 WR 322 (322)
T ss_pred cC
Confidence 97
No 2
>KOG4760 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.3e-58 Score=444.35 Aligned_cols=319 Identities=31% Similarity=0.528 Sum_probs=290.3
Q ss_pred CCCCC-CCCCCCeeeeChhhHHHHHHHHhcCCCcCCCCCcchhhhhhccccceeeeecccccccCCCCCCchhhcccccc
Q 015510 14 VNSAN-VTPDIPIEIVSEEEMALIDAALAAPRCCSPSSSLSFASQLQRNARFIHSISFLSKRSFSGRTESDIEDLGHLGM 92 (405)
Q Consensus 14 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~died~~~~~~ 92 (405)
+++|+ +.|+|||||+.+|||++.+|||+++- ||
T Consensus 32 ~~~~lvv~P~~~ie~~~~e~~~i~~~~lk~s~--------------------------------------~~-------- 65 (365)
T KOG4760|consen 32 PQSHLVVFPEIPIEILGEEEKPILDAALKASL--------------------------------------DI-------- 65 (365)
T ss_pred cccccccCCCCchhhhccchhHHHHHHHHhhh--------------------------------------hH--------
Confidence 45566 66999999999999999999998631 66
Q ss_pred cccccCCCCchHHHhhcCCCccccccCCccccccceeeeeecCCccccH-HHHHHHHHHHHHHHhhccceeeeeccchhH
Q 015510 93 TQKRNIIAKSLLDRFRKNRALSVTDVTDTEWCEKKMEFNLLFGSKKVNK-VMKVGRARHAELEKEVTEKVKVRVRSTEDI 171 (405)
Q Consensus 93 ~~~~~~~~~Spl~rfr~k~~LSVTdL~~~~WCElq~~Y~l~~g~~~~t~-am~~Gt~iH~~LE~e~~~~v~v~i~t~ed~ 171 (405)
.+.||+ +..||||||+++.|||.|..|.++..+...++ -|.+|..||+.+|.+++..+.+.|++.++.
T Consensus 66 ----------~~~r~H-~~yl~Vtdlvsp~wce~q~sy~l~r~i~~~s~~kl~~g~~ih~~~e~e~~~~~~~~Vtd~t~~ 134 (365)
T KOG4760|consen 66 ----------LMERFH-SIYLSVTDLVSPSWCEAQGSYELIRSITLFSKRKLSAGASIHESYEHEFRRNQTLGVTDLTGA 134 (365)
T ss_pred ----------HHHHHh-cccchhhhccchhhhccCCccchhhhhcccchhhhhccccHHHHHHhhccCcccccccccccH
Confidence 268887 56899999999999999999988866666665 799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHcCcEEEEEEEEEECCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCChhhccchhhHHH
Q 015510 172 WAVKLFNSITGVNQLLFEGLTRELPILGFIKGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAESQKRNGRLQLM 251 (405)
Q Consensus 172 wa~klln~i~~l~~L~~~G~~REl~V~G~i~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~~~~~~~~lQLm 251 (405)
||+++++.+-++-+|-.+|..||+||||+.+|+.+.|||||+.++-- +++.+.|.|||..+.+|..+|.....+|+|
T Consensus 135 wa~~~lr~l~~i~~lq~~g~~refpv~ge~e~v~~vgVidE~~~~~f---~~lel~~lktr~~~~~pg~~q~l~~~~q~~ 211 (365)
T KOG4760|consen 135 WAIKFLRILLLIPTLQSEGHIREFPVFGEGEGVLLVGVIDELHYTAF---GELELAELKTRRRPMLPGEAQKLKDCFQVS 211 (365)
T ss_pred HHHHHHHHHhhhhhhhhcCccceeeeccccceeEEEEEEeehhhhhh---hhhHHhhhccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999865 589999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCchhhhhhcCCCCCCCCCHHHHHhhhcCCCCCCCHHH--HHHHHHHHhhhCCCCCCceEEEEEEcc
Q 015510 252 CYKYMWDNLAADNFPSMQFYDFFSLNSDCILSEEIIEKTSNAGFPAKTLGD--LVKYFRNMWNMLPASHNQLLLRYEFQK 329 (405)
Q Consensus 252 lY~~ll~~L~~~~~~~~~~~~~~gLdpd~~~S~~~~~~~~~iGf~~~tl~d--llry~~~~~~~lP~~~~~L~IeY~~~~ 329 (405)
+|.++++.+.++++..-...-+..|--.+++-+.|..++..-|+..+.+.+ .|.|+.+.+.+||.++ +|.|+|++|+
T Consensus 212 ~y~~~f~~~~q~~~~p~s~~~~~kL~l~k~lw~~vl~~~~~~Gagvksl~~l~~lvf~s~t~~~Lpv~d-~L~i~Y~~qk 290 (365)
T KOG4760|consen 212 LYKYIFDAMVQGKVTPASLIHHTKLCLEKPLWPSVLRHAQQGGAGVKSLGDLMELVFLSLTLSDLPVID-ILKIEYIHQK 290 (365)
T ss_pred HHHhhhHHHhcccCccccccchhhhhhhhhhhHHHHHhhccCCcccccccchhHHHHHhhhhhccchhh-hheeeeeecC
Confidence 999999999998887777776777878889999999999888776666655 5889999999999887 9999999999
Q ss_pred CCCeeeeeeeecCHHHHHHHHHhhhhhhccccccCCCCCCCcccCCCCCCCCCCCCcCCCCCCC
Q 015510 330 DQSLLGEEKFAFDYDLFNSQIEVCLEFWKGEREASFTPLEDRWKCRYCQFESVCPAVLKPEITP 393 (405)
Q Consensus 330 d~~~~~~~~f~yd~~~L~~~l~~~~~fW~G~Re~~~V~~ee~~KCk~CeF~~~C~w~~~~~~~~ 393 (405)
|++++++..|.|+++|+++..+++++||+|+|||.|||+||+||||+|+|++.|+|++..+.-+
T Consensus 291 t~~V~~~~~f~f~~k~v~aky~~~~~fW~n~REp~gvp~EE~wKCR~C~fak~C~w~k~~~~~s 354 (365)
T KOG4760|consen 291 TATVLGTEIFAFKEKEVRAKYQHYMAFWMNHREPQGVPVEEAWKCRTCTFAKICEWRKGSGVLS 354 (365)
T ss_pred cceeEeeeeecccHHHHHHHHHHHHHHHhccCCCCCCCHHHhhccccchhhhhcCCcccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999887633
No 3
>PF12705 PDDEXK_1: PD-(D/E)XK nuclease superfamily; PDB: 1W36_B 3K70_B 3U4Q_A 3U44_A.
Probab=99.78 E-value=6.2e-20 Score=168.39 Aligned_cols=215 Identities=19% Similarity=0.244 Sum_probs=126.1
Q ss_pred CccccccCCccccccceeeeeecCCccc-----cHHHHHHHHHHHHHHHhhccceeeee---ccchhHHHHHHHHHHHH-
Q 015510 112 ALSVTDVTDTEWCEKKMEFNLLFGSKKV-----NKVMKVGRARHAELEKEVTEKVKVRV---RSTEDIWAVKLFNSITG- 182 (405)
Q Consensus 112 ~LSVTdL~~~~WCElq~~Y~l~~g~~~~-----t~am~~Gt~iH~~LE~e~~~~v~v~i---~t~ed~wa~klln~i~~- 182 (405)
+||+|+|.++..|+++|+|..+.+.+.. +.++..|+.+|+.||........-.. ....+.+..+++..+..
T Consensus 1 ~~S~S~l~~~~~CP~~~~~~~~~~l~~~~~~~~~~~~~~G~~~H~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (257)
T PF12705_consen 1 RLSASSLETYLRCPRRFYLRYILGLKEPEEKEDSDALEFGTAVHEILERFYRELKEDEFLEDDEELEEQIEELLEELEEL 80 (257)
T ss_dssp --BHHHHHHHHH-HHHHHHHTTS--------SS--CHHHHHHHHHHHCCCHTHHHHCT--HCCCCHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHCHHHHHHHhccCCCCCccccccchhhhhHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999998876653 57999999999999987754111111 11112222222211110
Q ss_pred ---------------------HHHHh--HcC--cEEEEEEEEEEC--CEEEEEEEeEEeCCCCCCCCCcEEEeecccCCC
Q 015510 183 ---------------------VNQLL--FEG--LTRELPILGFIK--GVWMVGVIDEIQMPVKETARNPILVDTKTRAQY 235 (405)
Q Consensus 183 ---------------------l~~L~--~~G--~~REl~V~G~i~--G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~ 235 (405)
+.... ..+ ...|.++...++ ++.|+|+||+|....+ +++.|+||||+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~l~G~iD~i~~~~~---g~~~IvDyKt~~~~ 157 (257)
T PF12705_consen 81 FREESDEPKLKERRITNAKLFIEEERSLPDFEPIAVEQRFEVEIDDEGVRLRGRIDRIDRDKD---GRVRIVDYKTGSSP 157 (257)
T ss_dssp GGCSCCTHHHCSHHHHHHHHHHHHHHCCHSGCEEEEEEEEEEEECCEEEEEEEEEEEEEECES---STEEEEEEESSS-S
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhhccCCCeeeeeeeeeeccCCCceEEEEEEeEEEEeCC---CcEEEEEEcCCCCC
Confidence 00000 112 588999999999 9999999999999933 48999999999986
Q ss_pred CCCChhhccchhhHHHHHHHHHHHhhcCCCCchhhhhhcCCCCCCCCCHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhCC
Q 015510 236 TLPAESQKRNGRLQLMCYKYMWDNLAADNFPSMQFYDFFSLNSDCILSEEIIEKTSNAGFPAKTLGDLVKYFRNMWNMLP 315 (405)
Q Consensus 236 ~lP~~~~~~~~~lQLmlY~~ll~~L~~~~~~~~~~~~~~gLdpd~~~S~~~~~~~~~iGf~~~tl~dllry~~~~~~~lP 315 (405)
. ........+|+.+|..++..... |.++
T Consensus 158 ~---~~~~~~~~~Ql~~Y~~~l~~~~~------------~~~~------------------------------------- 185 (257)
T PF12705_consen 158 D---DKSDLKYDLQLALYALALEQQFP------------GKPP------------------------------------- 185 (257)
T ss_dssp S---SHHHHHCHHHHHHHHHHHHHHHH------------TSHE-------------------------------------
T ss_pred C---ccchhhhHHHHHHHHHHHHhccc------------cCCc-------------------------------------
Confidence 3 22222389999999999988741 1111
Q ss_pred CCCCceEEEEEEccCCCeeeeeeeecCHHHHHHHHHhhhhhhccccc----c--CCCCCCCcccCCCCCCCCCCC
Q 015510 316 ASHNQLLLRYEFQKDQSLLGEEKFAFDYDLFNSQIEVCLEFWKGERE----A--SFTPLEDRWKCRYCQFESVCP 384 (405)
Q Consensus 316 ~~~~~L~IeY~~~~d~~~~~~~~f~yd~~~L~~~l~~~~~fW~G~Re----~--~~V~~ee~~KCk~CeF~~~C~ 384 (405)
..+.+.|..-..........+.++.+.++...+..-..|...+. . ..+++.....|++|+|+..|+
T Consensus 186 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~C~~C~~~~~C~ 257 (257)
T PF12705_consen 186 ---DKIGLVYLFLRQPKSPRRRKVDFSDEELEEFRERIRELLEEIAAGEFDGDIEPFPPPNSEHCSYCPFRDICR 257 (257)
T ss_dssp ---EEEEEEEEESSS--CC-TT--EE-HHHHHHHHHHHHHHHHHHHHHHHTT----EE-SS--TTSS-TTHHHHT
T ss_pred ---eeEEEEEEEecCCCccccccccCcHHHHHHHHHHHHHHHHHHHhhhhcCCccCCCCCCCCCCCCCCCcccCC
Confidence 14456666533221111235667777776655555554444332 1 334557899999999999995
No 4
>TIGR00372 cas4 CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.
Probab=99.60 E-value=8.8e-15 Score=132.52 Aligned_cols=173 Identities=21% Similarity=0.349 Sum_probs=119.7
Q ss_pred ccccccCCccccccceeeeeecCCccc-cHHHHHHHHHHHHHHHhhccceeeeeccchhHHHHHHHHHHHHHHHHhHcCc
Q 015510 113 LSVTDVTDTEWCEKKMEFNLLFGSKKV-NKVMKVGRARHAELEKEVTEKVKVRVRSTEDIWAVKLFNSITGVNQLLFEGL 191 (405)
Q Consensus 113 LSVTdL~~~~WCElq~~Y~l~~g~~~~-t~am~~Gt~iH~~LE~e~~~~v~v~i~t~ed~wa~klln~i~~l~~L~~~G~ 191 (405)
+++|++..+.+|++++||....+.+.. +..|..|+.+|..++...... .....
T Consensus 1 i~~s~i~~~~~CpR~~~~~~~~~~~~~~~~~~~~G~~~h~~~~~~~~~~--------------------------~~~~~ 54 (178)
T TIGR00372 1 ITVSDVLEYLYCPRKLWYMKKGGSERFSEVRMILGRLIHERAESFLKSL--------------------------GGVRE 54 (178)
T ss_pred CChHHhHHHHhChHHHHHHHhhcccccchhHHHHHHHHHHHhhhhhhcc--------------------------CCEEE
Confidence 478999999999999999998887764 445999999999998433111 00113
Q ss_pred EEEEEEEEEECCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCChhhccchhhHHHHHHHHHHHhhcCCCCchhhh
Q 015510 192 TRELPILGFIKGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAESQKRNGRLQLMCYKYMWDNLAADNFPSMQFY 271 (405)
Q Consensus 192 ~REl~V~G~i~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~~~~~~~~lQLmlY~~ll~~L~~~~~~~~~~~ 271 (405)
.+|+++.. +++.+.|+||.|...+ +++.|+|+||++.+. ...+++|+.+|.+++.+...
T Consensus 55 ~~~v~l~~--~~~~l~G~iD~i~~~~----~~~~ive~Ktg~~~~------~~~~~~Ql~~Ya~~l~~~~~--------- 113 (178)
T TIGR00372 55 EKEVPLKS--KKLGLKGVIDVVLEAD----GELVPVEVKSGKPKL------REAHKYQLLAYAYLLEEMYG--------- 113 (178)
T ss_pred EEeeEeEc--ccCCcEEEEEEEEEEC----CeEEEEEEecCCCCC------ChhHHHHHHHHHHHHHHhhC---------
Confidence 45555544 7778999999999764 379999999998653 16899999999999988631
Q ss_pred hhcCCCCCCCCCHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEEEccCCCeeeeeeeecCHHHHHHHH-
Q 015510 272 DFFSLNSDCILSEEIIEKTSNAGFPAKTLGDLVKYFRNMWNMLPASHNQLLLRYEFQKDQSLLGEEKFAFDYDLFNSQI- 350 (405)
Q Consensus 272 ~~~gLdpd~~~S~~~~~~~~~iGf~~~tl~dllry~~~~~~~lP~~~~~L~IeY~~~~d~~~~~~~~f~yd~~~L~~~l- 350 (405)
+. ..-.|.|...+ ... .+.+++++++...
T Consensus 114 -----~v----------------------------------------~~g~l~y~~~~--~~~---~v~~~~~~~~~~~~ 143 (178)
T TIGR00372 114 -----EI----------------------------------------VRGYILYIEAG--KKL---EVEISEELRKKAEK 143 (178)
T ss_pred -----CC----------------------------------------CcEEEEEEeCC--cEE---EecCCHHHHHHHHH
Confidence 11 13455665432 222 5677766555433
Q ss_pred --HhhhhhhccccccCCCCCCCcccCCCCCCCCCCC
Q 015510 351 --EVCLEFWKGEREASFTPLEDRWKCRYCQFESVCP 384 (405)
Q Consensus 351 --~~~~~fW~G~Re~~~V~~ee~~KCk~CeF~~~C~ 384 (405)
+...+.-.+...|. +..+.++|++|.|+..|+
T Consensus 144 ~~~~i~~~~~~~~~P~--~~~~~~~C~~C~y~~~C~ 177 (178)
T TIGR00372 144 LIEKIRELLEGGKPPS--PPKSSRKCKFCPYREICL 177 (178)
T ss_pred HHHHHHHHHhCCCCCC--CCCCCCcCCCCCCccccC
Confidence 33333444443332 234689999999999996
No 5
>TIGR03623 probable DNA repair protein. Members of this protein family are bacterial proteins of about 900 amino acids in length. Members show extended homology to proteins in TIGR02786, the AddB protein of double-strand break repair via homologous recombination. Members of this family, therefore, may be DNA repair proteins.
Probab=99.36 E-value=2.3e-12 Score=143.83 Aligned_cols=139 Identities=16% Similarity=0.075 Sum_probs=93.9
Q ss_pred CCCccccccCCccccccceeeeeecCCcc------ccHHHHHHHHHHHHHHHhhccceee----eeccch----------
Q 015510 110 NRALSVTDVTDTEWCEKKMEFNLLFGSKK------VNKVMKVGRARHAELEKEVTEKVKV----RVRSTE---------- 169 (405)
Q Consensus 110 k~~LSVTdL~~~~WCElq~~Y~l~~g~~~------~t~am~~Gt~iH~~LE~e~~~~v~v----~i~t~e---------- 169 (405)
..++|||.|.++.-|+++|++++..|.+. .-.++..|+.+|++||..+....+- .+ +.+
T Consensus 595 ~~~~SvS~Le~~~~CP~~~f~~~~L~l~~~~~~~~~~~~~~~G~l~H~vLe~~~~~~~~~~~l~~~-~~~~~~~~~~~~~ 673 (874)
T TIGR03623 595 RISGGTGLLKAQAACPFRAFAQHRLGARALEEPVDGLDALERGTLVHRVLELFWERLKNQEALNAL-DEAELEQLIAEAI 673 (874)
T ss_pred cCcCcHHHHHHHHhChHHHHHHHhcCCCCCCccccCCChhHhHHHHHHHHHHHHHHhhchhhhhhC-CHHHHHHHHHHHH
Confidence 34689999999999999999999877554 2467999999999999987532110 01 000
Q ss_pred --------------------hHHHHHHHHHHHHHHHHhH----c-C---cEEEEEEEEEECCEEEEEEEeEEeCCCCCCC
Q 015510 170 --------------------DIWAVKLFNSITGVNQLLF----E-G---LTRELPILGFIKGVWMVGVIDEIQMPVKETA 221 (405)
Q Consensus 170 --------------------d~wa~klln~i~~l~~L~~----~-G---~~REl~V~G~i~G~~v~GIIDeL~~~~~~~~ 221 (405)
..|..++...+. ..+. . + ...|..+...++|+.++|+||||+..++
T Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~---~~l~~e~~r~~f~~~~~E~~~~~~~~~~~l~GrIDRID~~~d--- 747 (874)
T TIGR03623 674 EEALAEERARHSQTFPERFLELEQERLLQLLL---EWLELERKRPPFEVVATEQNHSIEIGGLELKLRIDRIDRLAD--- 747 (874)
T ss_pred HHHHHHhhhhccccccHHHHHHHHHHHHHHHH---HHHHhhccCCCCceEEEeeeecceecCEEEEEEEEeeeecCC---
Confidence 001122222221 1111 1 1 4567776667899999999999998765
Q ss_pred CCcEEEeecccCCCCCCChhhccchhhHHHHHHHH
Q 015510 222 RNPILVDTKTRAQYTLPAESQKRNGRLQLMCYKYM 256 (405)
Q Consensus 222 ~~l~I~D~KTR~~~~lP~~~~~~~~~lQLmlY~~l 256 (405)
++..|+|||||+.+. ..........+||.+|..+
T Consensus 748 g~~~VIDYKTG~~~~-~~~~g~~~~~~QL~lYa~a 781 (874)
T TIGR03623 748 GSRLIIDYKTGAPSV-KDWLGERPVEPQLPLYALL 781 (874)
T ss_pred CCEEEEEeCCCCCCc-chhhhccccCChHHHHHHh
Confidence 478899999998532 1111245678999999876
No 6
>TIGR02774 rexB_recomb ATP-dependent nuclease subunit B. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RecAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. The partner may be designated AddB, as in Bacillus and in alphaproteobacteria, or RexB as in Streptococcus and Lactococcus. Note, however, that RexB proteins lack an N-terminal GxxGxGK[ST] ATP-binding motif found in Bacillus subtilis and related species, and this difference may be important; this model represents specifically RexB proteins as found in Streptococcus and Lactococcus.
Probab=99.31 E-value=5e-11 Score=135.84 Aligned_cols=250 Identities=12% Similarity=0.043 Sum_probs=137.3
Q ss_pred CCccccccCCccccccceeeeeecCCccc----cHHHHHHHHHHHHHHHhhcccee--e--e----ec--cc----hh--
Q 015510 111 RALSVTDVTDTEWCEKKMEFNLLFGSKKV----NKVMKVGRARHAELEKEVTEKVK--V--R----VR--ST----ED-- 170 (405)
Q Consensus 111 ~~LSVTdL~~~~WCElq~~Y~l~~g~~~~----t~am~~Gt~iH~~LE~e~~~~v~--v--~----i~--t~----ed-- 170 (405)
-++|||.|.++.-|+++|++++..|.+++ -.++..|+.+|.+||......-. . . +. .. ..
T Consensus 743 l~~SvS~le~~~~Cp~~~f~~y~L~l~e~~~~~~~~~~~G~l~H~~le~~~~~~~~e~~~~~~~~~v~~~~~~~~~~~~~ 822 (1076)
T TIGR02774 743 LKLSASALTTFYNNQYSYFLRYVLGLEEEESIHPDARHHGNYLHRIFERLMKLPGEESFDQKLNQAINETSQEREFEALY 822 (1076)
T ss_pred ceecHhHHHHHHhCcHHHHHHHhcCCCCCCCCCCChHHhHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 47999999999999999999998886552 35699999999999987653200 0 0 00 00 00
Q ss_pred ------HH-HHHHHHHHHHHH-HHhHcC----cEEEEE------EEEEEC---CEEEEEEEeEEeCCCCCCCCCcEEEee
Q 015510 171 ------IW-AVKLFNSITGVN-QLLFEG----LTRELP------ILGFIK---GVWMVGVIDEIQMPVKETARNPILVDT 229 (405)
Q Consensus 171 ------~w-a~klln~i~~l~-~L~~~G----~~REl~------V~G~i~---G~~v~GIIDeL~~~~~~~~~~l~I~D~ 229 (405)
.+ ..++..++..+. .|...+ ...|.. +...++ .+.++|+|||||...++ +.++|+||
T Consensus 823 ~s~~r~~~~~~~l~~~~~~~~~~l~~~~~f~p~~~E~~fg~~~~~~~~l~~g~~v~L~GrIDRID~~~~~--~~lrVIDY 900 (1076)
T TIGR02774 823 QEDAEARYTLEILLDIARSTAPILRHNSAIQVIKEEENFGGKDNFQLQIDNGRSIFVRGIIDRIDRLSDG--GSLGVVDY 900 (1076)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEeecCCCCceeEEcCCCCEEEEeeEEeeeeccCCC--CcEEEEEe
Confidence 01 111122222221 222222 344542 223343 28999999999986652 35999999
Q ss_pred cccCCCCCCChhhccchhhHHHHHHHHHHHhhcC---CCCchhhhhhcC---CCCCCCCCHH-----HHHhhhcCCCCCC
Q 015510 230 KTRAQYTLPAESQKRNGRLQLMCYKYMWDNLAAD---NFPSMQFYDFFS---LNSDCILSEE-----IIEKTSNAGFPAK 298 (405)
Q Consensus 230 KTR~~~~lP~~~~~~~~~lQLmlY~~ll~~L~~~---~~~~~~~~~~~g---Ldpd~~~S~~-----~~~~~~~iGf~~~ 298 (405)
|||++.. .-.....+-.+||++|-..+...... ..|.--|+=+.. ++.+...+++ +.....--|+
T Consensus 901 KTG~~~~-~l~~~y~Gl~lQL~~Yl~a~~~~~~~~~~~~PaG~lY~~~~~P~i~~~~~~~~e~~e~~~~k~~k~~Gl--- 976 (1076)
T TIGR02774 901 KSSATQF-DIPHFYNGLSPQLPTYLAALKRIAPHEGEQPIFGAMYLHMQEPVQDLMAVKNLDDAVVEASKALKYQGL--- 976 (1076)
T ss_pred CCCCCCC-CHHHhhcchhhHHHHHHHHHHHhHhhcCCCCcceEEEEEecCccccCCCCCCHHHHHHHHHHHhcCCce---
Confidence 9998631 11233567789999998776654211 123222221110 1112222222 1111222221
Q ss_pred CHHHHHHHHHHHhhhCCCCCCceEEEEEEccCCCeeeeeeeecCHHHHHH---HH-----HhhhhhhccccccCCCCCCC
Q 015510 299 TLGDLVKYFRNMWNMLPASHNQLLLRYEFQKDQSLLGEEKFAFDYDLFNS---QI-----EVCLEFWKGEREASFTPLED 370 (405)
Q Consensus 299 tl~dllry~~~~~~~lP~~~~~L~IeY~~~~d~~~~~~~~f~yd~~~L~~---~l-----~~~~~fW~G~Re~~~V~~ee 370 (405)
-++|+++.+...+ .... ...+++++++. ++ +-+-+.-.|+=++.++.-..
T Consensus 977 ~l~d~~~~md~~~---------------~k~~-------s~~~t~eef~~L~~~~~~~i~~~~~~I~~G~i~i~P~~~~~ 1034 (1076)
T TIGR02774 977 FSEKEKSHLAEGY---------------NKNK-------ANLYSDEELQLLLDYNKYLYKKAAETILSGRFAINPYTEDG 1034 (1076)
T ss_pred ehHHHHHHhhhhh---------------hhcc-------CCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCceecCC
Confidence 2334444333211 0011 23345555443 32 22335667888888766555
Q ss_pred cccCCCCCCCCCCCCcCCC
Q 015510 371 RWKCRYCQFESVCPAVLKP 389 (405)
Q Consensus 371 ~~KCk~CeF~~~C~w~~~~ 389 (405)
.. |.||+|+++|..-+..
T Consensus 1035 ~~-c~yC~y~~IC~FD~~l 1052 (1076)
T TIGR02774 1035 RS-VQGDQLKAITGFEADR 1052 (1076)
T ss_pred cc-CCCCCCcCcCCCCCCC
Confidence 66 9999999999865544
No 7
>PHA01622 CRISPR-associated Cas4-like protein
Probab=99.29 E-value=1.4e-10 Score=109.62 Aligned_cols=181 Identities=18% Similarity=0.279 Sum_probs=122.3
Q ss_pred chHHHhhcCCCccccccCCccccccceeeeeecCCccc--cHHHHHHHHHHHHHHHhhccceeeeeccchhHHHHHHHHH
Q 015510 102 SLLDRFRKNRALSVTDVTDTEWCEKKMEFNLLFGSKKV--NKVMKVGRARHAELEKEVTEKVKVRVRSTEDIWAVKLFNS 179 (405)
Q Consensus 102 Spl~rfr~k~~LSVTdL~~~~WCElq~~Y~l~~g~~~~--t~am~~Gt~iH~~LE~e~~~~v~v~i~t~ed~wa~klln~ 179 (405)
|...+++ ++.+.||+|. -|+++.||..--..... ++.+..|..+|..+|+...+..
T Consensus 10 ~~~~~~~-~~~~~~t~~~---~C~rk~wl~~~i~~e~~~~~~~~~~G~~ihe~~~~~~~~~~------------------ 67 (204)
T PHA01622 10 SFKVKYP-IDTLFPSEVG---ICYRKSYLARNIEFERGINEIYLDLGEQYHERIEQYFKEKL------------------ 67 (204)
T ss_pred HHHhhCc-CCcEeechhe---ecccHHHHhcccccccccCchHHHHHHHHHHHHHHHHHHHh------------------
Confidence 3344454 6789999985 69999999321122224 8899999999998887553211
Q ss_pred HHHHHHHhHcCcEEEEEEEEEECCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCChhhccchhhHHHHHHHHHHH
Q 015510 180 ITGVNQLLFEGLTRELPILGFIKGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAESQKRNGRLQLMCYKYMWDN 259 (405)
Q Consensus 180 i~~l~~L~~~G~~REl~V~G~i~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~~~~~~~~lQLmlY~~ll~~ 259 (405)
+...|.+|.+.++|+.+.|.||-|. .+ . |+|+||.+... ......+++||.+|.+++..
T Consensus 68 ----------~~e~Ekei~~~i~~i~i~GkID~l~--~~----~--iiEvKsS~k~~---~~~~~~~~~Qla~Yl~~Lk~ 126 (204)
T PHA01622 68 ----------NCQTEVEIKDEIEGIKISGRIDIVC--NN----D--LLEIKTISYNY---FQVKEYHLYQVALYYHILKK 126 (204)
T ss_pred ----------CceeEEEEEEEECCEEEEEEEEEEe--CC----c--eEEEEecCCCC---CcccHhHHHHHHHHHHHHHH
Confidence 2457888888899999999999998 22 2 89999987531 12256999999999999975
Q ss_pred hhcCCCCchhhhhhcCCCCCCCCCHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEEEccCCCeeeeeee
Q 015510 260 LAADNFPSMQFYDFFSLNSDCILSEEIIEKTSNAGFPAKTLGDLVKYFRNMWNMLPASHNQLLLRYEFQKDQSLLGEEKF 339 (405)
Q Consensus 260 L~~~~~~~~~~~~~~gLdpd~~~S~~~~~~~~~iGf~~~tl~dllry~~~~~~~lP~~~~~L~IeY~~~~d~~~~~~~~f 339 (405)
+ |++.. ...+.|..+.. -....+
T Consensus 127 ~--------------Gi~v~----------------------------------------g~~l~~i~~k~---~~v~~~ 149 (204)
T PHA01622 127 Q--------------NYQIN----------------------------------------NVYIVYLNRNT---REVKQF 149 (204)
T ss_pred c--------------CCCCC----------------------------------------ceEEEEecCCC---CceeEE
Confidence 3 33221 22333433222 133356
Q ss_pred ecCHHHHHHHHHh-------hhhhhccccccCCCCCCCcccCCCCCCCCCC
Q 015510 340 AFDYDLFNSQIEV-------CLEFWKGEREASFTPLEDRWKCRYCQFESVC 383 (405)
Q Consensus 340 ~yd~~~L~~~l~~-------~~~fW~G~Re~~~V~~ee~~KCk~CeF~~~C 383 (405)
..+.+.++..+.. ..+++.|+-.|.. ++...|.|+.|+|.+.|
T Consensus 150 ~~~e~~le~~i~~I~~~i~~i~~~~~~~~~p~~-~~~~~~~C~~C~Y~e~C 199 (204)
T PHA01622 150 KIDEKVLETYYQKVIEWIKKFKEYLKETDYKKV-PGVNNYICKSCEFKQKC 199 (204)
T ss_pred EcChHHHHHHHHHHHHHHHHHHHHhccCCCCCC-CCCCcCcCCCCCchhhh
Confidence 6676666654433 3445556555665 66678999999999999
No 8
>PHA00619 CRISPR-associated Cas4-like protein
Probab=99.28 E-value=1.4e-10 Score=109.27 Aligned_cols=176 Identities=19% Similarity=0.163 Sum_probs=117.5
Q ss_pred CCCccccccCCccccccceeeeeecCCcc----ccHHHHHHHHHHHHHHHhhccceeeeeccchhHHHHHHHHHHHHHHH
Q 015510 110 NRALSVTDVTDTEWCEKKMEFNLLFGSKK----VNKVMKVGRARHAELEKEVTEKVKVRVRSTEDIWAVKLFNSITGVNQ 185 (405)
Q Consensus 110 k~~LSVTdL~~~~WCElq~~Y~l~~g~~~----~t~am~~Gt~iH~~LE~e~~~~v~v~i~t~ed~wa~klln~i~~l~~ 185 (405)
...+.||||. -|+++.||....+... ....|..|..+|..||+.+..
T Consensus 20 ~~~i~~sd~~---~CpRk~w~~~~~~~~~~~~~~~~~~~~G~~iHe~~~~~~~~-------------------------- 70 (201)
T PHA00619 20 LQTIWVTELS---RCLRRSWLMRKNGGVKLALEEAMKMHIGSGLHMRLQRILKK-------------------------- 70 (201)
T ss_pred CCeEEeeehh---cCccHHHHHHhccccccccccchHHHhhHHHHHHHHHHHhh--------------------------
Confidence 3579999986 6999999998765433 467789999999999987642
Q ss_pred HhHcCcEEEEEEEEEE-CCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCChhhccchhhHHHHHHHHHHHhhcCC
Q 015510 186 LLFEGLTRELPILGFI-KGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAESQKRNGRLQLMCYKYMWDNLAADN 264 (405)
Q Consensus 186 L~~~G~~REl~V~G~i-~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~~~~~~~~lQLmlY~~ll~~L~~~~ 264 (405)
.+..||..|.-.+ .|..|.|+||-|+ . ++..|+|+||.+....+. ....++++||.+|.+++.. ..|
T Consensus 71 ---~sy~~e~~ve~~i~~~~~i~G~ID~i~--~----~~~~vvEiK~s~~~~~~~-~~~~~~~~QL~~Yl~lL~~-~~G- 138 (201)
T PHA00619 71 ---HGFETECRVERKTALGFEIVGKIDVYD--K----EENTIYELKYTHMDDLDK-GRLNNYLRQLNYYIEMANA-MAG- 138 (201)
T ss_pred ---cCceeEEEEEEecccceEEEEEEEEEe--C----CCcEEEEEEccCCCcccc-cchHHHHHHHHHHHHHHHh-cCc-
Confidence 1233333222111 5888999999994 2 245999999977544321 2467999999999999876 111
Q ss_pred CCchhhhhhcCCCCCCCCCHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEEEccCCCeeeeeeeecCHH
Q 015510 265 FPSMQFYDFFSLNSDCILSEEIIEKTSNAGFPAKTLGDLVKYFRNMWNMLPASHNQLLLRYEFQKDQSLLGEEKFAFDYD 344 (405)
Q Consensus 265 ~~~~~~~~~~gLdpd~~~S~~~~~~~~~iGf~~~tl~dllry~~~~~~~lP~~~~~L~IeY~~~~d~~~~~~~~f~yd~~ 344 (405)
.|.| ...++... ......+.+
T Consensus 139 ---------------------------------------------------------~l~~-~~~~rk~~-eV~~~~~~~ 159 (201)
T PHA00619 139 ---------------------------------------------------------YLII-VHADGRVE-EIKRDWSET 159 (201)
T ss_pred ---------------------------------------------------------EEEE-EcCCCceE-EeeccccHH
Confidence 1111 01111112 223567888
Q ss_pred HHHHHHHhhhhhhccccccCCCCCCCcccCCCCCCCCCCCCc
Q 015510 345 LFNSQIEVCLEFWKGEREASFTPLEDRWKCRYCQFESVCPAV 386 (405)
Q Consensus 345 ~L~~~l~~~~~fW~G~Re~~~V~~ee~~KCk~CeF~~~C~w~ 386 (405)
.|...+.+....=.....|.. +++..|+|++|.|++.|.||
T Consensus 160 ~l~~~i~~I~~ii~~~~~P~~-~~~~~~~C~~C~y~~~C~~~ 200 (201)
T PHA00619 160 DLENRANAFGISVEENILPPK-KSKPDSECIECPFYNVCWKR 200 (201)
T ss_pred HHHHHHHHHHHHHhcCcCCCC-CCCCcCcCCCCCCcccCCCC
Confidence 888877776666555555531 33458999999999999876
No 9
>TIGR02773 addB_Gpos ATP-dependent nuclease subunit B. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function.
Probab=99.14 E-value=1.3e-09 Score=125.32 Aligned_cols=149 Identities=17% Similarity=0.129 Sum_probs=91.4
Q ss_pred CCCccccccCCccccccceeeeeecCCccc----cHHHHHHHHHHHHHHHhhcccee--eee--ccch----------h-
Q 015510 110 NRALSVTDVTDTEWCEKKMEFNLLFGSKKV----NKVMKVGRARHAELEKEVTEKVK--VRV--RSTE----------D- 170 (405)
Q Consensus 110 k~~LSVTdL~~~~WCElq~~Y~l~~g~~~~----t~am~~Gt~iH~~LE~e~~~~v~--v~i--~t~e----------d- 170 (405)
+-+.|||.|.++.-|+.+|++.+-.+.+++ =.++..|+.+|.+||..+..... ... .+.+ +
T Consensus 780 ~l~~SvS~le~~~~Cpf~~F~~ygL~l~er~~~~l~~~~~G~~~H~~Le~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 859 (1158)
T TIGR02773 780 TIQASVSRLEKYNACPFAHFAQYGLKLKERKIYKLEAPDLGQIFHEALKEISDELKEEDLDWSDLTKEQCRALANEAVEN 859 (1158)
T ss_pred CcccChHHHHHHHhChHHHHHHHhcCCCcccccCCChhhhHHHHHHHHHHHHHHHHHcCCChHhcCHHHHHHHHHHHHHH
Confidence 458999999999999999999887766653 24689999999999997543211 110 0000 0
Q ss_pred -----------------HHHHHHHHHHHH----HHHHhHcC----cEEEEEE----------EEEE-CC--EEEEEEEeE
Q 015510 171 -----------------IWAVKLFNSITG----VNQLLFEG----LTRELPI----------LGFI-KG--VWMVGVIDE 212 (405)
Q Consensus 171 -----------------~wa~klln~i~~----l~~L~~~G----~~REl~V----------~G~i-~G--~~v~GIIDe 212 (405)
....+|..++.. |..-...| ...|..+ .-.+ +| +.++|+|||
T Consensus 860 ~~~~~~~~~~~~~~r~~~~~~rl~~~~~~~~~~l~~~~~~~~f~p~~~E~~Fg~~~~~~~~~~~~l~~g~~v~l~G~IDR 939 (1158)
T TIGR02773 860 LVPKIQHEILLSSKRYRYVQKRLKRIVTRAVKVLSEQAKRSKFVPVGLELGFGFGGNELPPLKLILKNGEELNLRGRIDR 939 (1158)
T ss_pred HHHHhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccceeeeeeecCCCCCCCCeeEEcCCCCEEEEEeEEcc
Confidence 111222222221 11111122 5666633 1122 34 669999999
Q ss_pred EeCCCCCCCCCcEEEeecccCCCCCCChhhccchhhHHHHHHHHHHH
Q 015510 213 IQMPVKETARNPILVDTKTRAQYTLPAESQKRNGRLQLMCYKYMWDN 259 (405)
Q Consensus 213 L~~~~~~~~~~l~I~D~KTR~~~~lP~~~~~~~~~lQLmlY~~ll~~ 259 (405)
||...++.+.-+.||||||+... +.-.....+-.+||.+|-..+..
T Consensus 940 iD~~~~~~~~y~~iIDYKsg~~~-~~l~~~~~Gl~lQLl~Yl~~~~~ 985 (1158)
T TIGR02773 940 VDKAEKEDETYLRIIDYKSSSKK-LDLTEVYYGLALQMLTYLDIVLT 985 (1158)
T ss_pred eeccccCCceEEEEEEECCCCCC-cCHHHHhccHHHHHHHHHHHHHH
Confidence 99876421223479999999853 22234567889999999644443
No 10
>PF01930 Cas_Cas4: Domain of unknown function DUF83; InterPro: IPR022765 This entry represents an uncharacterised domain found in several proteins, including DNA replication helicase Dna2, clustered regularly interspaced short palindromic repeats (CRISPR)-associated exonuclease Cas4 and putative RecB family exonuclease proteins.
Probab=99.11 E-value=4.8e-10 Score=100.76 Aligned_cols=156 Identities=21% Similarity=0.367 Sum_probs=104.8
Q ss_pred cccccCCccccccceeeeeecCCcc--ccHHHHHHHHHHHHHHHhhccceeeeeccchhHHHHHHHHHHHHHHHHhHcCc
Q 015510 114 SVTDVTDTEWCEKKMEFNLLFGSKK--VNKVMKVGRARHAELEKEVTEKVKVRVRSTEDIWAVKLFNSITGVNQLLFEGL 191 (405)
Q Consensus 114 SVTdL~~~~WCElq~~Y~l~~g~~~--~t~am~~Gt~iH~~LE~e~~~~v~v~i~t~ed~wa~klln~i~~l~~L~~~G~ 191 (405)
++|++..+..|+++.||... +... .+..|..|..+|+.-... .
T Consensus 1 t~s~v~~y~~CpR~~~l~~~-~~~~~~~~~~~~~G~~~h~~~~~~----------------------------------~ 45 (162)
T PF01930_consen 1 TGSMVNEYVYCPRRAYLERV-GIEPEEPTESMELGRELHEERYER----------------------------------E 45 (162)
T ss_pred CHHHhhHHHHccHHHHHHHc-CCcccCCHhHHHhhHHhhhhhhhh----------------------------------c
Confidence 47888899999999999998 4332 467899999999911110 1
Q ss_pred EEEEEEEEEECCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCChhhccchhhHHHHHHHHHHHhhcCCCCchhhh
Q 015510 192 TRELPILGFIKGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAESQKRNGRLQLMCYKYMWDNLAADNFPSMQFY 271 (405)
Q Consensus 192 ~REl~V~G~i~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~~~~~~~~lQLmlY~~ll~~L~~~~~~~~~~~ 271 (405)
.+|+.| .. .|+||.|.... +.+.++++|++... ...+++||.+|.++|+.+
T Consensus 46 ~~~v~v-s~------~G~iD~v~~~~----~~~~~~E~K~~~~~-------~~~~~~Ql~~Y~~lL~~~----------- 96 (162)
T PF01930_consen 46 KREVPV-SE------SGKIDIVEKGG----GEIIPVEIKSGRKP-------REEHRMQLAAYALLLEEF----------- 96 (162)
T ss_pred ceeecc-CC------cEEEEEEEEeC----CEEEEEEEecCCCC-------cchhHHHHHHHHHHHHhc-----------
Confidence 144444 11 99999999443 48999999998875 457799999999999832
Q ss_pred hhcCCCCCCCCCHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEEEccCCCeeeeeeeecCHHHH---HH
Q 015510 272 DFFSLNSDCILSEEIIEKTSNAGFPAKTLGDLVKYFRNMWNMLPASHNQLLLRYEFQKDQSLLGEEKFAFDYDLF---NS 348 (405)
Q Consensus 272 ~~~gLdpd~~~S~~~~~~~~~iGf~~~tl~dllry~~~~~~~lP~~~~~L~IeY~~~~d~~~~~~~~f~yd~~~L---~~ 348 (405)
|++.. .-.|.|...+. .....++++.. ..
T Consensus 97 ---g~~v~----------------------------------------~G~i~y~~~~~-----~~~v~~~~~~~~~v~~ 128 (162)
T PF01930_consen 97 ---GIPVK----------------------------------------RGYIYYIEDRK-----RVRVEITEELRRKVEK 128 (162)
T ss_pred ---Cccce----------------------------------------eEEEEEecCCe-----EEEEeCCHHHHHHHHH
Confidence 33221 23555554332 22455665443 34
Q ss_pred HHHhhhhhhccccccCCCCCCCcccCCCCCCCCCCC
Q 015510 349 QIEVCLEFWKGEREASFTPLEDRWKCRYCQFESVCP 384 (405)
Q Consensus 349 ~l~~~~~fW~G~Re~~~V~~ee~~KCk~CeF~~~C~ 384 (405)
.++..-+.=.|+..|. +....||..|.|++.|.
T Consensus 129 ~i~~i~~~~~~~~~P~---~~~~~~C~~C~y~~~C~ 161 (162)
T PF01930_consen 129 LIEEIRKILEGESPPP---PENSKKCRRCSYREFCW 161 (162)
T ss_pred HHHHHHHHHhCCCcCC---CCCCCCCCCCCCcCcCC
Confidence 4555555555554443 34566999999999996
No 11
>TIGR02786 addB_alphas double-strand break repair protein AddB, alphaproteobacterial type. AddAB is a system well described in the Firmicutes as a replacement for RecBCD in many prokaryotes for the repair of double stranded break DNA damage. More recently, a distantly related gene pair conserved in many alphaproteobacteria was shown also to function in double-stranded break repair in Rhizobium etli. This family consists of AddB proteins of the alphaproteobacteial type.
Probab=99.07 E-value=3.3e-10 Score=128.72 Aligned_cols=144 Identities=17% Similarity=0.120 Sum_probs=95.9
Q ss_pred CCCccccccCCccccccceeeeeecCCccc------cHHHHHHHHHHHHHHHhhccce-eee------e--------cc-
Q 015510 110 NRALSVTDVTDTEWCEKKMEFNLLFGSKKV------NKVMKVGRARHAELEKEVTEKV-KVR------V--------RS- 167 (405)
Q Consensus 110 k~~LSVTdL~~~~WCElq~~Y~l~~g~~~~------t~am~~Gt~iH~~LE~e~~~~v-~v~------i--------~t- 167 (405)
..++|||.|.++.-|+++||+++..|.+.. -.++..|+.+|++||+.+.... ... + ..
T Consensus 746 ~~~~SvS~le~~~~cPy~~fary~L~L~~~~~~~~~~~a~~~G~l~H~vLe~f~~~~~~~~~~~~~~~l~~~~~~~~~~~ 825 (1021)
T TIGR02786 746 PRHFSVTEIETLRRDPYAIYARHILKLRPLDPLDRDPEAADRGTLIHDILERFVREYPDPLPADAADALRKIGRAEFASL 825 (1021)
T ss_pred cCCcCHHHHHHHHhChHHHHHHHhcCCCCCCCCCCCCCHHHhhHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHh
Confidence 457999999999999999999999887752 4689999999999998765421 100 0 00
Q ss_pred -----chhHHHHHHHHHHHHH---HHHhHcC---cEEEEEEEEEE---CCEEEEEEEeEEeCCCCCCCCCcEEEeecccC
Q 015510 168 -----TEDIWAVKLFNSITGV---NQLLFEG---LTRELPILGFI---KGVWMVGVIDEIQMPVKETARNPILVDTKTRA 233 (405)
Q Consensus 168 -----~ed~wa~klln~i~~l---~~L~~~G---~~REl~V~G~i---~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~ 233 (405)
....|..++..++... ++-...+ ...|+...-.+ +|+.|+|.||||+..++ +.+.|+|||||+
T Consensus 826 ~~~~~~~~l~~~R~~~~~~~~l~~e~~r~~~f~~~~~E~~~~~~l~~~~~i~L~GriDRID~~~d---g~~~IIDYKTG~ 902 (1021)
T TIGR02786 826 NLPPTAEALWWPRFARAADWFADWERARRLDVRRIFAEARGRKELVGERGFTLSGRADRIDRTPD---GSAAILDYKTGA 902 (1021)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHhhccCCCcceEeeecceeeccCCceEEEEEEEEEEEcCC---CCEEEEEeCCCC
Confidence 0112323332222111 1111111 22344433222 48999999999998765 489999999998
Q ss_pred CCCCCChh-hccchhhHHHHHHHHHHH
Q 015510 234 QYTLPAES-QKRNGRLQLMCYKYMWDN 259 (405)
Q Consensus 234 ~~~lP~~~-~~~~~~lQLmlY~~ll~~ 259 (405)
.+ +.. ...+-..||.+|..++..
T Consensus 903 ~p---~~~~~~~g~~~QL~lya~~~~~ 926 (1021)
T TIGR02786 903 PP---SGKQVRAGLSPQLALEAALLMR 926 (1021)
T ss_pred CC---ChHhhhcchhhHHHHHHHHHHc
Confidence 63 433 367889999999988876
No 12
>COG2887 RecB family exonuclease [DNA replication, recombination, and repair]
Probab=99.01 E-value=2e-09 Score=105.74 Aligned_cols=136 Identities=20% Similarity=0.118 Sum_probs=87.7
Q ss_pred ccccccCCccccccceeeeeecCCcc------ccHHHHHHHHHHHHHHHhhccceeeee---------------------
Q 015510 113 LSVTDVTDTEWCEKKMEFNLLFGSKK------VNKVMKVGRARHAELEKEVTEKVKVRV--------------------- 165 (405)
Q Consensus 113 LSVTdL~~~~WCElq~~Y~l~~g~~~------~t~am~~Gt~iH~~LE~e~~~~v~v~i--------------------- 165 (405)
||||.+.+..-|++.++++-+.+.+. ..++...|+.+|+.+|....+ +....
T Consensus 1 ls~s~~~~l~r~p~~~~a~~i~~l~~~~~~~e~~~~~~~g~~~h~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (269)
T COG2887 1 LSVSRAEALRRCPYLFYARRILALPPLGTRAEEPEAAVRGTLLHAILEALVGE-RYHAAAAALAKLAWLLRKELAEAELP 79 (269)
T ss_pred CchhhhhhhccCcHHHHHHHHhccCCCCcccccccccccccHHHHHHHHHhhc-cccccchhHHHHhhhhhhhhhhhhcc
Confidence 68899999999999999988876554 356677899999999998853 21110
Q ss_pred ccchhHHHHHHHHHHHHHHH--HhH-cC------cEEEEEEEEEECC-EEEEEEEeEEeCCCCCCCCCcEEEeecccCCC
Q 015510 166 RSTEDIWAVKLFNSITGVNQ--LLF-EG------LTRELPILGFIKG-VWMVGVIDEIQMPVKETARNPILVDTKTRAQY 235 (405)
Q Consensus 166 ~t~ed~wa~klln~i~~l~~--L~~-~G------~~REl~V~G~i~G-~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~ 235 (405)
...++.|..++.-+...+.. +.. .+ .+-+..+...++| +.++|+||||+..+. +++.|+|||||+.+
T Consensus 80 ~~~~~~~~~r~~~~~~~~~~~~~e~~r~~~~~~~~~e~~~~~~~i~~~i~l~G~aDRid~~~~---g~i~ilDYKTG~~p 156 (269)
T COG2887 80 GYTDAEWLDRLRARARAFLVYDWERERGTAFHAWLEEERGAELLIDGGIRLRGRADRIDKDAD---GELEILDYKTGKSP 156 (269)
T ss_pred cccCchhHHHHHHhHHhhcchhHHHhccccceeeeeEeecceeEecccceecceecccccCCC---CcEEEEEeecCCCC
Confidence 01124565566554443322 333 22 2222224445655 999999999999987 48999999999986
Q ss_pred CCCChhhccchhhHHHHHH
Q 015510 236 TLPAESQKRNGRLQLMCYK 254 (405)
Q Consensus 236 ~lP~~~~~~~~~lQLmlY~ 254 (405)
+.-.. .....-|+.+|.
T Consensus 157 ~~a~~--~~~~~~ql~~~~ 173 (269)
T COG2887 157 SAARA--PAAVSPQLALEA 173 (269)
T ss_pred chhcc--hhhcCcchHHHH
Confidence 32222 333344555554
No 13
>PF12684 DUF3799: PDDEXK-like domain of unknown function (DUF3799); InterPro: IPR024432 This entry represents a PDDEXK-like domain of unknown function found in proteins from bacteria and viruses. Many of these proteins are annotated as exodeoxyribonuclease 8, which is involved in the RecE pathway of recombination. The PD-(D/E)XK domain is ubiquitously found in enzymes involved in metabolism of nucleic acids, mostly in nucleases []. ; PDB: 3L0A_A 3H4R_A.
Probab=98.56 E-value=1.4e-07 Score=91.32 Aligned_cols=140 Identities=22% Similarity=0.181 Sum_probs=88.8
Q ss_pred CccccccCCccccccceeeeeecCCcc---ccHHHHHHHHHHHHHHHh-hccceee------------eeccchh-HHHH
Q 015510 112 ALSVTDVTDTEWCEKKMEFNLLFGSKK---VNKVMKVGRARHAELEKE-VTEKVKV------------RVRSTED-IWAV 174 (405)
Q Consensus 112 ~LSVTdL~~~~WCElq~~Y~l~~g~~~---~t~am~~Gt~iH~~LE~e-~~~~v~v------------~i~t~ed-~wa~ 174 (405)
.+|+|.|...+-||-.+.=. +.|... .|.||..|+.+|..||-+ +|+...+ .+.++.+ .-|.
T Consensus 2 y~S~Sq~K~f~~ceA~~~A~-l~g~~~~~~~t~All~Gs~vH~~~E~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~a~ 80 (237)
T PF12684_consen 2 YMSVSQFKDFLECEARALAK-LNGEWEPEEDTTALLVGSYVHSYFEPEEFHDEFIEEHPEMFSKRGKKKGILKAEFKTAE 80 (237)
T ss_dssp -EEHHHHHHHHH-HHHHHHH-CTTS-------CHHCHHHHHHHHCCCHHHCHHHHHH-GGGB-----TTSSB-HHCCHHH
T ss_pred CccHHHHhHHhcCHHHHHHH-hcCCccCCCCCcHHHhhhHHHHHhcCcchHHHHHHhhHHHHhhhcccccccHHHHHHHH
Confidence 47999999999999855433 345333 689999999999998873 3322111 0111211 1144
Q ss_pred HHHHHHHH---HHHHhHcCcEEEEEEEEEECCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCCh----------h
Q 015510 175 KLFNSITG---VNQLLFEGLTRELPILGFIKGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAE----------S 241 (405)
Q Consensus 175 klln~i~~---l~~L~~~G~~REl~V~G~i~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~----------~ 241 (405)
++.+.+.. ...|+. | .+|+.++|.+.|+...|.||-+..... +|+|+||-+... |.. .
T Consensus 81 ~Mi~~l~~~~~~~~ll~-G-ekev~~~~e~~Gv~~K~R~D~l~~~~~------~ivDlKTt~d~~-~~~~~~~~~~~~~~ 151 (237)
T PF12684_consen 81 KMIEALKADPLFMELLQ-G-EKEVIWTDEITGVPCKCRPDCLNPDRG------YIVDLKTTADIS-PKYWNENEGRFVRF 151 (237)
T ss_dssp HHHHHHCTSHHHHHHCT-S-CEEEEEEECCTTEEEEEEECEEECCCC------EEEEEEEES-CC---EEETTTEHCCHH
T ss_pred HHHHHHHcCHHHHHHHh-C-ceEEEEEEeeCCeEEEEEeEEEecCCC------ceEEeeecccCc-cccccccccHHHHH
Confidence 55444422 234445 6 899999999999999999999986532 678999998643 111 1
Q ss_pred -hccchhhHHHHHHHHHHHhh
Q 015510 242 -QKRNGRLQLMCYKYMWDNLA 261 (405)
Q Consensus 242 -~~~~~~lQLmlY~~ll~~L~ 261 (405)
..-.-.+|+.+|..++....
T Consensus 152 i~~~~Y~~Q~A~Y~e~~~~~~ 172 (237)
T PF12684_consen 152 IENYGYHLQAAFYQEGLRQNT 172 (237)
T ss_dssp HHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHh
Confidence 12345699999999988764
No 14
>COG3857 AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair]
Probab=98.47 E-value=1e-06 Score=98.58 Aligned_cols=154 Identities=19% Similarity=0.170 Sum_probs=96.4
Q ss_pred hhcCCCccccccCCccccccceeeeeecCCccc----cHHHHHHHHHHHHHHHhhccceee----eeccc----------
Q 015510 107 FRKNRALSVTDVTDTEWCEKKMEFNLLFGSKKV----NKVMKVGRARHAELEKEVTEKVKV----RVRST---------- 168 (405)
Q Consensus 107 fr~k~~LSVTdL~~~~WCElq~~Y~l~~g~~~~----t~am~~Gt~iH~~LE~e~~~~v~v----~i~t~---------- 168 (405)
|-.+-.+|||.|..+.-||.+|+-.+..|.+++ -.+...|...|.++|+-..+.... ...+.
T Consensus 746 yG~~l~~SVSrlE~f~~Cpf~yf~~ygL~Lker~~~~l~~~dlG~~fH~v~e~i~e~~~~~~~d~~~l~~~~~~~l~~~i 825 (1108)
T COG3857 746 YGEELYLSVSRLEKFYRCPFSYFLEYGLGLKERKDIHLDARDLGNFFHRVFERISEEENLENQDWNFLNEEDCERLTQKI 825 (1108)
T ss_pred cCCceEeehHHHHHHHcCcHHHHHHHhhcccceeccCCCchhHHHHHHHHHHHHHHhhhhccCCcccccHHHHHHHHHHH
Confidence 334557999999999999999998888887763 467899999999999876532211 00000
Q ss_pred hh-----------------HH-HHHHHHHHHHHHHHhH-cCcEEEEEEEE----------------EEC--CEEEEEEEe
Q 015510 169 ED-----------------IW-AVKLFNSITGVNQLLF-EGLTRELPILG----------------FIK--GVWMVGVID 211 (405)
Q Consensus 169 ed-----------------~w-a~klln~i~~l~~L~~-~G~~REl~V~G----------------~i~--G~~v~GIID 211 (405)
.+ .| ..+|...+..-.+.+. ++..-++...| .-+ .+.++|+||
T Consensus 826 ~~~~~~~~~~~il~ss~r~~y~~~kL~~Ivr~t~~iL~e~~~~~~f~pi~~E~~Fglk~~~~~~i~l~~g~~i~l~GrID 905 (1108)
T COG3857 826 VEVLLEKEQEQILLSSARYEYTLEKLEDIVRRTATILAEQAKFSDFEPIGEEASFGLKGLPPLTIGLPSGSEILLRGRID 905 (1108)
T ss_pred HHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccceechhhhccCCCCCCcceecCCCCCeEEEEeeee
Confidence 00 11 2223333322222222 22222222211 112 389999999
Q ss_pred EEeCCCCCCCCCcEEEeecccCCCCCCChhhccchhhHHHHHHHHHHHhhcC
Q 015510 212 EIQMPVKETARNPILVDTKTRAQYTLPAESQKRNGRLQLMCYKYMWDNLAAD 263 (405)
Q Consensus 212 eL~~~~~~~~~~l~I~D~KTR~~~~lP~~~~~~~~~lQLmlY~~ll~~L~~~ 263 (405)
|||.... ++-+.|+|||++.. ..--...-.+=.+|||.|=-++.+-...
T Consensus 906 RID~~~~--~~~l~IvDYKSsa~-~f~l~~vYyGL~lQlmTYLdai~q~~~~ 954 (1108)
T COG3857 906 RIDQLEK--DGYLGIVDYKSSAH-QFDLTDVYYGLSLQLMTYLDAIKQNAPE 954 (1108)
T ss_pred hhhhhcc--CCceEEEEeccccc-ccchhhhccchhHHHHHHHHHHHHhhhh
Confidence 9999876 34799999999443 3333345677789999997666665444
No 15
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=98.17 E-value=6.9e-06 Score=94.84 Aligned_cols=117 Identities=16% Similarity=0.207 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHhhccceee-e--e----------ccch--hHHHHHHHHHHHH--HHHHhHcCcEEEEEEEEEE--
Q 015510 141 KVMKVGRARHAELEKEVTEKVKV-R--V----------RSTE--DIWAVKLFNSITG--VNQLLFEGLTRELPILGFI-- 201 (405)
Q Consensus 141 ~am~~Gt~iH~~LE~e~~~~v~v-~--i----------~t~e--d~wa~klln~i~~--l~~L~~~G~~REl~V~G~i-- 201 (405)
.++..|+.+|..||..-...... . . .... +.+...+..++.. +..++..+...|+++.|.+
T Consensus 984 ~a~~~G~~iH~lLe~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~E~~~~~~~~~ 1063 (1141)
T TIGR02784 984 FALRRGTLLHRLLQHLPDLAPEEREDAARRYLARSAADWPEAEREKLLAAVLAVLDDPRLAPVFAEGSRAEVAIMGTLKI 1063 (1141)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHcCcccHhhcCCCcceeeeeeceecc
Confidence 58999999999999853211000 0 0 0000 1122222222221 3344545667799999976
Q ss_pred --CCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCChh-hccchhhHHHHHHHHHHHhhc
Q 015510 202 --KGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAES-QKRNGRLQLMCYKYMWDNLAA 262 (405)
Q Consensus 202 --~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~~-~~~~~~lQLmlY~~ll~~L~~ 262 (405)
.++.++|+||+|...++ ++.|+||||+..+. +... .......||.+|+.++..+..
T Consensus 1064 ~~~~~~~~g~iDRl~~~~~----~~~IiDYKT~~~~~-~~~~~~~~~y~~QL~~Y~~~~~~~~p 1122 (1141)
T TIGR02784 1064 GGQELAVSGQIDRLAVDDN----RVLIVDYKTNRPVP-ATPEEVPPAYLRQLALYRALLEPLYP 1122 (1141)
T ss_pred CCCceeEEEEEEEEEeeCC----EEEEEEcCCCCCCC-CChhhhhhHHHHHHHHHHHHHHHHcC
Confidence 24689999999999864 79999999998631 1222 345688999999999988753
No 16
>COG1468 CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms]
Probab=98.14 E-value=1.4e-05 Score=75.16 Aligned_cols=167 Identities=19% Similarity=0.357 Sum_probs=103.0
Q ss_pred CCccccccCCccccccceeeeeecCCccc----cHHHHHHHHHHHHHHHhhccceeeeeccchhHHHHHHHHHHHHHHHH
Q 015510 111 RALSVTDVTDTEWCEKKMEFNLLFGSKKV----NKVMKVGRARHAELEKEVTEKVKVRVRSTEDIWAVKLFNSITGVNQL 186 (405)
Q Consensus 111 ~~LSVTdL~~~~WCElq~~Y~l~~g~~~~----t~am~~Gt~iH~~LE~e~~~~v~v~i~t~ed~wa~klln~i~~l~~L 186 (405)
..++++++..+.+|+++.||....+-... +..+..|..+|..+|....+.-++
T Consensus 14 ~~i~~~~v~~y~~Cprk~w~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~v----------------------- 70 (190)
T COG1468 14 MRITGSDVNEYLYCPRKLWLFSRGGPEESPEVYSEGVELGKLIHEKLEKFLRDEKEV----------------------- 70 (190)
T ss_pred eeecHHHHHHHHhcCHHHHHHHhcCccccchhcchhhhhhHHHHHHHHHHhcccccc-----------------------
Confidence 46899999999999999999987554433 466778888888887733222111
Q ss_pred hHcCcEEEEEEEEEECCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCChhhccchhhHHHHHHHHHHHhhcCCCC
Q 015510 187 LFEGLTRELPILGFIKGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAESQKRNGRLQLMCYKYMWDNLAADNFP 266 (405)
Q Consensus 187 ~~~G~~REl~V~G~i~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~~~~~~~~lQLmlY~~ll~~L~~~~~~ 266 (405)
.++|.++ .||-|....+. -..-.++++|+++...-. .+++||.+|-++++.
T Consensus 71 -------------~l~~~~i--~~d~lk~~~~~-~~~~~~vEiK~~~~~~~~------~~~~Ql~~ylyl~e~------- 121 (190)
T COG1468 71 -------------ELEGEWI--KIDFLKGRMDL-EVKDVVVEIKKSKKMEKA------PHKLQLAYYLYLEEK------- 121 (190)
T ss_pred -------------eecceee--eeeeeccccee-eccceeEEEecCcCcccc------hHHHHHHHHHHHHHh-------
Confidence 1222222 45555444320 001268999999875311 189999888777763
Q ss_pred chhhhhhcCCCCCCCCCHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEEEccCCCeeeeeeeecCHHHH
Q 015510 267 SMQFYDFFSLNSDCILSEEIIEKTSNAGFPAKTLGDLVKYFRNMWNMLPASHNQLLLRYEFQKDQSLLGEEKFAFDYDLF 346 (405)
Q Consensus 267 ~~~~~~~~gLdpd~~~S~~~~~~~~~iGf~~~tl~dllry~~~~~~~lP~~~~~L~IeY~~~~d~~~~~~~~f~yd~~~L 346 (405)
+|...+ .-.|.|-..+ ......++++..
T Consensus 122 -------~g~~v~----------------------------------------~g~i~Y~~~~-----k~~~Vei~~~~~ 149 (190)
T COG1468 122 -------LGIAVA----------------------------------------KGYIYYPKLK-----KRVEVELTEELR 149 (190)
T ss_pred -------hCceee----------------------------------------eEEEEecccC-----cEEEEEeCHHHH
Confidence 233221 3344554433 223455555444
Q ss_pred H---HHHHhhhhhhccccccCCCCCCCcccCCCCCCCCCCC
Q 015510 347 N---SQIEVCLEFWKGEREASFTPLEDRWKCRYCQFESVCP 384 (405)
Q Consensus 347 ~---~~l~~~~~fW~G~Re~~~V~~ee~~KCk~CeF~~~C~ 384 (405)
+ ..+...-..-.|. .++++...++|++|.|+..|.
T Consensus 150 e~v~~~~~ei~~ile~~---~~p~~~~~~~C~~C~y~~iC~ 187 (190)
T COG1468 150 EEVERVLKEIEEILEGG---KPPPPKKKKKCKKCAYREICF 187 (190)
T ss_pred HHHHHHHHHHHHHHhCC---CCCCCCCCCcCCCCCcceecc
Confidence 3 4555555666665 334556799999999999996
No 17
>TIGR01896 cas_AF1879 CRISPR-associated protein, Csa1 family. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model describes a particularly strongly conserved family found so only in the APERN subtype of CRISPR/Cas loci and represented by AF1879 from Archaeoglobus fulgidus. This family has four perfectly preserved Cys residues. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa1, for CRISPR/Cas Subtype Protein 1.
Probab=97.83 E-value=0.00032 Score=69.34 Aligned_cols=200 Identities=19% Similarity=0.212 Sum_probs=112.3
Q ss_pred CCccccccCCccccccce--eeeeecCCcc-ccHHHHHHHHHHHHHHHhhcccee-----eee------ccchhH-HHHH
Q 015510 111 RALSVTDVTDTEWCEKKM--EFNLLFGSKK-VNKVMKVGRARHAELEKEVTEKVK-----VRV------RSTEDI-WAVK 175 (405)
Q Consensus 111 ~~LSVTdL~~~~WCElq~--~Y~l~~g~~~-~t~am~~Gt~iH~~LE~e~~~~v~-----v~i------~t~ed~-wa~k 175 (405)
-+|||+|++ ..-||-.= |.+...|.+. ++.+|..|..||+++=.-+.+.-. .+. ...+.. -+..
T Consensus 33 ~~l~v~dva-~~yCpt~RdvyLrrv~~~r~~~~~~~~~G~~iH~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~ 111 (271)
T TIGR01896 33 LGLSLSDVA-YGYCPTGRDVYLKRVLGIRGEVRGLLVLGQAIHEAFLKALEEVRKLIYSGYDMFSVLLRSFRAREFCAKE 111 (271)
T ss_pred CCCCHHHHc-cCCCCCcchhhhhhhhccccCcchhhHhhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 489999998 56788553 4443445443 599999999999987766543110 000 001111 1222
Q ss_pred HHHHHHH-----HHHHhHc--------------CcEEEEEEEEEECCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCC
Q 015510 176 LFNSITG-----VNQLLFE--------------GLTRELPILGFIKGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYT 236 (405)
Q Consensus 176 lln~i~~-----l~~L~~~--------------G~~REl~V~G~i~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~ 236 (405)
++.++.. +...+.. ....|..|-|..=|.-=.=..|-..+. ...++|+|+++..
T Consensus 112 ~~~~~~~~~~~~~~~v~~~~~~~~~~s~~~~~~P~~~E~~vDGs~lGLs~~l~~Da~~~~------~~~pVEyK~G~~~- 184 (271)
T TIGR01896 112 LWKYGVEIYSAVMAYVFEKASFFSADSLVFLVIPVAVEYNVDGSPLGLSDRLRVDALVGI------LPVVVEMKVGSYQ- 184 (271)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchhhhhccceEEEeccCCccccCccccccchhhcc------cceeEEEecCCCC-
Confidence 2332221 1111111 134444444433331100123332222 3579999999732
Q ss_pred CCChhhccchhhHHHHHHHHHHHhhcCCCCchhhhhhcCCCCCCCCCHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhCCC
Q 015510 237 LPAESQKRNGRLQLMCYKYMWDNLAADNFPSMQFYDFFSLNSDCILSEEIIEKTSNAGFPAKTLGDLVKYFRNMWNMLPA 316 (405)
Q Consensus 237 lP~~~~~~~~~lQLmlY~~ll~~L~~~~~~~~~~~~~~gLdpd~~~S~~~~~~~~~iGf~~~tl~dllry~~~~~~~lP~ 316 (405)
..+++|+-.|++++++. ||...+
T Consensus 185 -------~~hklQLaaYALllEe~-------------yg~pVd------------------------------------- 207 (271)
T TIGR01896 185 -------ERHELALAGYALAIEAD-------------LEVPVD------------------------------------- 207 (271)
T ss_pred -------chhHHHHHHHHHHHHHH-------------HCCCCc-------------------------------------
Confidence 38899999999999987 454333
Q ss_pred CCCceEEEEEEccCCCeeeeeeeecCHHHHHH---HHHhhhhhhccccccCCCCCCCcccCC-CCCCCCCC
Q 015510 317 SHNQLLLRYEFQKDQSLLGEEKFAFDYDLFNS---QIEVCLEFWKGEREASFTPLEDRWKCR-YCQFESVC 383 (405)
Q Consensus 317 ~~~~L~IeY~~~~d~~~~~~~~f~yd~~~L~~---~l~~~~~fW~G~Re~~~V~~ee~~KCk-~CeF~~~C 383 (405)
.-.|.|...++......+.+.+|++..+. .+..+.+-=..++.|.. .-||. .|.|+..|
T Consensus 208 ---~G~I~y~~~~~r~~~~~~~V~I~d~LR~~v~e~~dei~~iI~~g~~P~p-----s~KC~~~C~f~~vC 270 (271)
T TIGR01896 208 ---YGLLVYVNVNDGVEIKARLVYISDDLRTEFLERRDEAIRIIEYGSDPGL-----PPKCPPTCPFLEHC 270 (271)
T ss_pred ---ceeEEEEeeccccccceEEEECCHHHHHHHHHHHHHHHHHHhCCCCCCC-----cccccCCCCCcCcc
Confidence 23556655444333344567777665544 44466666666677764 22996 99999999
No 18
>KOG4760 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=3.7e-07 Score=90.19 Aligned_cols=178 Identities=19% Similarity=0.089 Sum_probs=129.6
Q ss_pred CCCcCCC---CCcchhhhhhccccceeeeecccccccCCCCCCchhhcccccccccccCCCCchHHHhhcCCCccccccC
Q 015510 43 PRCCSPS---SSLSFASQLQRNARFIHSISFLSKRSFSGRTESDIEDLGHLGMTQKRNIIAKSLLDRFRKNRALSVTDVT 119 (405)
Q Consensus 43 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~died~~~~~~~~~~~~~~~Spl~rfr~k~~LSVTdL~ 119 (405)
-++...+ .++++-..+|+....|++|+.+|||+|+.|. +|+. ++..+||+...+-|||+.
T Consensus 70 ~H~~yl~Vtdlvsp~wce~q~sy~l~r~i~~~s~~kl~~g~--~ih~---------------~~e~e~~~~~~~~Vtd~t 132 (365)
T KOG4760|consen 70 FHSIYLSVTDLVSPSWCEAQGSYELIRSITLFSKRKLSAGA--SIHE---------------SYEHEFRRNQTLGVTDLT 132 (365)
T ss_pred HhcccchhhhccchhhhccCCccchhhhhcccchhhhhccc--cHHH---------------HHHhhccCcccccccccc
Confidence 3454444 7888889999999999999999999999998 8874 467999988899999999
Q ss_pred CccccccceeeeeecCCccccHHHHHHHHHHHHHHHhhccceeeeeccchhHHHHHHHHHHHHHHHHhHcCcEEEEEEEE
Q 015510 120 DTEWCEKKMEFNLLFGSKKVNKVMKVGRARHAELEKEVTEKVKVRVRSTEDIWAVKLFNSITGVNQLLFEGLTRELPILG 199 (405)
Q Consensus 120 ~~~WCElq~~Y~l~~g~~~~t~am~~Gt~iH~~LE~e~~~~v~v~i~t~ed~wa~klln~i~~l~~L~~~G~~REl~V~G 199 (405)
. +.+..+-.+.+......+|..|...|--+|.+....|.|.....++.+ .++|+.--|
T Consensus 133 ~----~wa~~~lr~l~~i~~lq~~g~~refpv~ge~e~v~~vgVidE~~~~~f------------------~~lel~~lk 190 (365)
T KOG4760|consen 133 G----AWAIKFLRILLLIPTLQSEGHIREFPVFGEGEGVLLVGVIDELHYTAF------------------GELELAELK 190 (365)
T ss_pred c----HHHHHHHHHHhhhhhhhhcCccceeeeccccceeEEEEEEeehhhhhh------------------hhhHHhhhc
Confidence 8 556665554444445677999999999999998877766554444422 455666678
Q ss_pred EECCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCChhhccchhhHHHHHHHHHHHhhcCC
Q 015510 200 FIKGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAESQKRNGRLQLMCYKYMWDNLAADN 264 (405)
Q Consensus 200 ~i~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~~~~~~~~lQLmlY~~ll~~L~~~~ 264 (405)
+..|-++-|++|.++-.-.. ..-..+.|-| ...|-.++...+..|||+|+.+|+......
T Consensus 191 tr~~~~~pg~~q~l~~~~q~-~~y~~~f~~~----~q~~~~p~s~~~~~kL~l~k~lw~~vl~~~ 250 (365)
T KOG4760|consen 191 TRRRPMLPGEAQKLKDCFQV-SLYKYIFDAM----VQGKVTPASLIHHTKLCLEKPLWPSVLRHA 250 (365)
T ss_pred cccccccccHHHHHHHHHHH-HHHHhhhHHH----hcccCccccccchhhhhhhhhhhHHHHHhh
Confidence 88899999999998753110 0011223322 223344567889999999999998876653
No 19
>PRK13909 putative recombination protein RecB; Provisional
Probab=97.58 E-value=0.00021 Score=81.03 Aligned_cols=107 Identities=21% Similarity=0.192 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHHHHHHhhccce-eee------------eccc--hhHHHHHHHHHHH--HHHHHhHc-CcEEEEEEEEEE
Q 015510 140 NKVMKVGRARHAELEKEVTEKV-KVR------------VRST--EDIWAVKLFNSIT--GVNQLLFE-GLTRELPILGFI 201 (405)
Q Consensus 140 t~am~~Gt~iH~~LE~e~~~~v-~v~------------i~t~--ed~wa~klln~i~--~l~~L~~~-G~~REl~V~G~i 201 (405)
..++..|..+|..||..-.-.. +.+ .... .+.+..++..++. .+..++.. ..-.|.++.+
T Consensus 764 ~~~~~~G~~lH~~Le~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~v~~~l~~~~~~~~f~~~~~~~E~~i~~-- 841 (910)
T PRK13909 764 LEAIYFGIALHYCLEMLYAFKIENLEVLKNLLKNRYGHFLDESDLEDLEKRLELLINNKEFQALLKDGKLLKEQALLF-- 841 (910)
T ss_pred HHHHHHHHHHHHHHHhCcccChhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHcCHHHHHHhccCceeeeeeecc--
Confidence 3579999999999998753110 100 0011 1233344444444 24456653 3678999865
Q ss_pred CCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCChhhccchhhHHHHHHHHHHHhh
Q 015510 202 KGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAESQKRNGRLQLMCYKYMWDNLA 261 (405)
Q Consensus 202 ~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~~~~~~~~lQLmlY~~ll~~L~ 261 (405)
+| ..|+||+|...++ +++|+||||+..+ .....-||..|+.++....
T Consensus 842 ~g--~~~riDrl~~~~~----~v~IiDYKTg~~~-------~~~y~~Ql~~Y~~~L~~~~ 888 (910)
T PRK13909 842 NG--ELKQIDLLLEKDE----EICVIDYKSSKKY-------QEEHKAQVSHYKEAIKEIL 888 (910)
T ss_pred CC--ccccceEEEEcCC----EEEEEEECCCCCC-------hHHHHHHHHHHHHHHHHHc
Confidence 67 5699999998654 7999999999743 2467899999999996553
No 20
>TIGR03491 RecB family nuclease, putative, TM0106 family. Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats.
Probab=97.46 E-value=0.0018 Score=68.16 Aligned_cols=188 Identities=13% Similarity=0.099 Sum_probs=105.5
Q ss_pred ccccccCCccccccceeeeeecCCc----cccHHHHHHHHHHHHHHHhhccceeeeeccchhHHHHHHHHHHHHHHHHhH
Q 015510 113 LSVTDVTDTEWCEKKMEFNLLFGSK----KVNKVMKVGRARHAELEKEVTEKVKVRVRSTEDIWAVKLFNSITGVNQLLF 188 (405)
Q Consensus 113 LSVTdL~~~~WCElq~~Y~l~~g~~----~~t~am~~Gt~iH~~LE~e~~~~v~v~i~t~ed~wa~klln~i~~l~~L~~ 188 (405)
+|.++|....-|+++.+.+.....+ .....++.=... ..-|..+ -.++......-..++.
T Consensus 1 ~~~~~l~~~~~C~~r~~ld~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~---------------~~~~~~~~~~T~~am~ 64 (457)
T TIGR03491 1 ITDSDLLSFLRCRRRAWLDLYGDKQQKEAPPDFLLQLRQDK-QAFVQLI---------------LEDPAARAEAGLDACA 64 (457)
T ss_pred CCHHHHHHHhcCChHHHHhhcCCcccCCCCccHHHHHHHHH-HHHHHHH---------------HHhHHHHHHHHHHHHh
Confidence 5789999999999999998764211 112222111111 1111111 0011122233334455
Q ss_pred cCcEEEEEEEEEE----CC-EEEEEEEeEEeCCCCCC---CCCcEEEeecccCCCCCCChhhccchhhHHHHHHHHHHHh
Q 015510 189 EGLTRELPILGFI----KG-VWMVGVIDEIQMPVKET---ARNPILVDTKTRAQYTLPAESQKRNGRLQLMCYKYMWDNL 260 (405)
Q Consensus 189 ~G~~REl~V~G~i----~G-~~v~GIIDeL~~~~~~~---~~~l~I~D~KTR~~~~lP~~~~~~~~~lQLmlY~~ll~~L 260 (405)
.|.. ....|.+ .| .-+.|.+|-|...++.+ +..+.++|+|-++.. +..+++|+.+|.+++..+
T Consensus 65 ~G~~--~I~~a~l~~~~~~~~~~~~~~DlL~r~~~~s~~g~~~Y~pve~Kls~~~-------k~~~~lqlA~ya~lL~~~ 135 (457)
T TIGR03491 65 AGAD--GIYGGRLKHDLPQNLPHVSHPDLLVKDPGRSAWGDWAYEPVLIKLGKRP-------KDEYRLVLAFHALLLESF 135 (457)
T ss_pred cCCc--EEEEeEeecccCCCCceEEECCEEEecCCCCCCCCceEEEEEEEecCCC-------CHHHHHHHHHHHHHHHHh
Confidence 6622 2223322 22 45899999999866521 345799999998864 358999999999999987
Q ss_pred hcCCCCchhhhhhcCCCCCCCCCHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhCCCCCCceEEEEEEccCCCeeeeeeee
Q 015510 261 AADNFPSMQFYDFFSLNSDCILSEEIIEKTSNAGFPAKTLGDLVKYFRNMWNMLPASHNQLLLRYEFQKDQSLLGEEKFA 340 (405)
Q Consensus 261 ~~~~~~~~~~~~~~gLdpd~~~S~~~~~~~~~iGf~~~tl~dllry~~~~~~~lP~~~~~L~IeY~~~~d~~~~~~~~f~ 340 (405)
. |..|. ...|.+ +++.........
T Consensus 136 ~-------------g~~~~----------------------------------------~~~l~l---~~~~~~~~~~~~ 159 (457)
T TIGR03491 136 Q-------------GVAPK----------------------------------------KGLIIL---RDGNSLKVELIK 159 (457)
T ss_pred c-------------CCCCC----------------------------------------eEEEEE---CCCceEEEEhHh
Confidence 3 23221 333333 222222222233
Q ss_pred cCHHHHHHHHHhhhhhhccccccCCCCCCCcccCCCCCCCCCCC
Q 015510 341 FDYDLFNSQIEVCLEFWKGEREASFTPLEDRWKCRYCQFESVCP 384 (405)
Q Consensus 341 yd~~~L~~~l~~~~~fW~G~Re~~~V~~ee~~KCk~CeF~~~C~ 384 (405)
+.+. +...+........+..+|...+ +..+|..|.|.+.|.
T Consensus 160 ~~~~-~~~~~~~~~~~L~~~~~P~~~~--~~~~C~~C~~~~~C~ 200 (457)
T TIGR03491 160 LLPQ-LRQDLADFLLTLNADLEPEVFI--SRKKCTLCSWRKDCE 200 (457)
T ss_pred hhHH-HHHHHHHHHHHhcCCCCCCCcC--ChhhcccCchHHHHH
Confidence 3322 5556666666666655554322 358999999999993
No 21
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=97.17 E-value=0.0011 Score=77.54 Aligned_cols=121 Identities=21% Similarity=0.185 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHhhcccee-e-------------eeccchhHH---HHHHHHHHHH-HHHH-hH--cCcEEEEEEEE
Q 015510 141 KVMKVGRARHAELEKEVTEKVK-V-------------RVRSTEDIW---AVKLFNSITG-VNQL-LF--EGLTRELPILG 199 (405)
Q Consensus 141 ~am~~Gt~iH~~LE~e~~~~v~-v-------------~i~t~ed~w---a~klln~i~~-l~~L-~~--~G~~REl~V~G 199 (405)
.+..+||.+|.++|..-..... . .+.+.+..- ..+++.|+.. |-+. .. ...-||.|+.-
T Consensus 1058 ~~ae~Gta~H~~mq~ld~~~~~~~~~i~~~i~~l~~~~~l~~~~~~~i~~~~i~~F~~s~lg~r~~~a~~~~~rE~~F~~ 1137 (1232)
T TIGR02785 1058 TAAEIGTATHLVMQHLDLSKDLSEEELQAQIDRLVKNELLTEEQAEKINIDKIVAFFDTPLGKQILKAKEVLRREPFFSM 1137 (1232)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHhhCCHHHHHHHhcCHHHHHHHhhhhceeeeCChhh
Confidence 4789999999999987532111 0 011222111 1345555542 2222 22 34788988654
Q ss_pred EE--------------CCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCC----hhhccchhhHHHHHHHHHHHhh
Q 015510 200 FI--------------KGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPA----ESQKRNGRLQLMCYKYMWDNLA 261 (405)
Q Consensus 200 ~i--------------~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~----~~~~~~~~lQLmlY~~ll~~L~ 261 (405)
.+ +.++|.||||-+-..++ +++|+||||=.... +. +....--+.||.||+..+..+.
T Consensus 1138 ~~~~~~~~~~~~~~~~e~vlvqGiiD~~f~~~d----~ivL~DYKTD~v~~-~~~~~~~~l~~rY~~Ql~lY~~Ale~i~ 1212 (1232)
T TIGR02785 1138 LISAEIYFDDRDEADEEDILVQGIIDGYLESED----GIVLFDYKTDHVEG-PSFEKINQLKERYRGQLALYEKALEEIY 1212 (1232)
T ss_pred cCcHHHhccccccCCCCcEEEEEeEEEEEEECC----EEEEEEecCCCcCC-cccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 34999999999998765 79999999998643 10 1133445799999999999986
Q ss_pred cCCCC
Q 015510 262 ADNFP 266 (405)
Q Consensus 262 ~~~~~ 266 (405)
..++.
T Consensus 1213 ~~~v~ 1217 (1232)
T TIGR02785 1213 KKKVK 1217 (1232)
T ss_pred CCCcc
Confidence 65443
No 22
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=96.53 E-value=0.0079 Score=70.08 Aligned_cols=59 Identities=20% Similarity=0.125 Sum_probs=45.4
Q ss_pred CCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCCh------hhccchhhHHHHHHHHHHHhhcCC
Q 015510 202 KGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAE------SQKRNGRLQLMCYKYMWDNLAADN 264 (405)
Q Consensus 202 ~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~------~~~~~~~lQLmlY~~ll~~L~~~~ 264 (405)
.+..|+|+||.|-..++ +++|+||||..-..-... .....-++|+.+|...+..+....
T Consensus 1057 ~~~~~~G~IDl~f~~~~----~~yivDYKTn~l~~~~~~y~~~~~~~~~~Y~~Q~~lY~~al~~~l~~r 1121 (1139)
T COG1074 1057 ERGLLQGIIDLLFRHEG----RYYILDYKTNRLGDDSAAYSPAEAMLKQRYDLQLQLYAEALHRILRKR 1121 (1139)
T ss_pred hcceeEEEEEEEEEECC----EEEEEEccCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhccc
Confidence 45779999999999865 899999999765432222 135556799999999999987664
No 23
>PF06023 DUF911: Archaeal protein of unknown function (DUF911); InterPro: IPR009260 This family consists of several archaeal strongly conserved proteins whose genes are associated with CRISPRs (Clustered, Regularly Interspaced Short Palidromic Repeats). The function of these proteins has not been experimentally determined, but computational analysis has suggested that they may function as nucleases in DNA repair, similar to RecB (IPR004586 from INTERPRO) [].
Probab=96.46 E-value=0.046 Score=54.70 Aligned_cols=135 Identities=21% Similarity=0.241 Sum_probs=80.8
Q ss_pred CCccccccCCccccccc--eeeeeecCCcc-ccHHHHHHHHHHHHHHHhhccceee-----e----e--ccc--------
Q 015510 111 RALSVTDVTDTEWCEKK--MEFNLLFGSKK-VNKVMKVGRARHAELEKEVTEKVKV-----R----V--RST-------- 168 (405)
Q Consensus 111 ~~LSVTdL~~~~WCElq--~~Y~l~~g~~~-~t~am~~Gt~iH~~LE~e~~~~v~v-----~----i--~t~-------- 168 (405)
-+|||++++. .-||-. .|.+-..|.+. .+.+|..|..||+++=..+.+.... . . ...
T Consensus 43 ~~LsvsEVa~-~yCpT~RDvYLRRV~gvr~e~s~~m~~G~~iH~v~~~a~~~~kr~i~~g~~~~~~~~~~~~~~~~~~~~ 121 (289)
T PF06023_consen 43 LRLSVSEVAY-GYCPTGRDVYLRRVLGVRGEPSEAMSKGRAIHEVFATAFREAKRLIYSGVPPWWDLERILMEDEFEAPE 121 (289)
T ss_pred cCCCHHHHhc-CCCCCCcceeeeecccccCCcccccchhHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHhhhhhhhchH
Confidence 4799999984 556643 34454455543 5899999999999877765431111 0 0 001
Q ss_pred -hhHHHHHHHHHHHH-HHHHhH----c--------------CcEEEEEEEEEECCEEEEEEEeEEeCCCCCCCCCcEEEe
Q 015510 169 -EDIWAVKLFNSITG-VNQLLF----E--------------GLTRELPILGFIKGVWMVGVIDEIQMPVKETARNPILVD 228 (405)
Q Consensus 169 -ed~wa~klln~i~~-l~~L~~----~--------------G~~REl~V~G~i~G~~v~GIIDeL~~~~~~~~~~l~I~D 228 (405)
....+.++++++.. +..-+. . ....|.+|-|..=|.-=.-.+|-+... ...|+|
T Consensus 122 ~~~~~~~~l~~~~~~~~~a~~~~v~ak~~~~~~dsl~~~~~P~~~E~~vDGs~LGLS~~lr~Da~~~~------~~~Vve 195 (289)
T PF06023_consen 122 ELREKARKLYKYEASRLLAELDEVRAKYPYLTEDSLASLAIPIAVEYPVDGSPLGLSDNLRVDAFVLF------GPVVVE 195 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhccCceEEEeccCCcccccccccccceeccc------CceEEE
Confidence 11245556654322 111111 1 134555555554443334556665554 339999
Q ss_pred ecccCCCCCCChhhccchhhHHHHHHHHHHHh
Q 015510 229 TKTRAQYTLPAESQKRNGRLQLMCYKYMWDNL 260 (405)
Q Consensus 229 ~KTR~~~~lP~~~~~~~~~lQLmlY~~ll~~L 260 (405)
+|||... .-+++|+.=|++.++..
T Consensus 196 ~K~G~~~--------~~h~lalaGYALA~Es~ 219 (289)
T PF06023_consen 196 VKTGEYR--------DFHRLALAGYALAIESW 219 (289)
T ss_pred EecCCch--------hHHHHHHHHHHHHHHHh
Confidence 9999853 67899999999999886
No 24
>PF10926 DUF2800: Protein of unknown function (DUF2800); InterPro: IPR021229 This entry is represented by Bacteriophage APSE-1, protein 51. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised proteins found in bacteria and viruses. Some members of this family are annotated as being Phi APSE P51-like proteins.
Probab=96.42 E-value=0.057 Score=55.87 Aligned_cols=136 Identities=16% Similarity=0.098 Sum_probs=78.8
Q ss_pred CccccccCCccccccceeeeeecCCcc-ccHHHHHHHHHHHHHHHhhccceeeee----c----------cchhHHHHHH
Q 015510 112 ALSVTDVTDTEWCEKKMEFNLLFGSKK-VNKVMKVGRARHAELEKEVTEKVKVRV----R----------STEDIWAVKL 176 (405)
Q Consensus 112 ~LSVTdL~~~~WCElq~~Y~l~~g~~~-~t~am~~Gt~iH~~LE~e~~~~v~v~i----~----------t~ed~wa~kl 176 (405)
.||+|.-...+-|+=--. +..+.|. .+.+...||.-|..-|.-+........ . ...+.+..-.
T Consensus 3 ~LSaSsa~RWl~Cp~S~~--Le~~~pd~~S~~A~EGT~AH~laE~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~eM~~~~ 80 (372)
T PF10926_consen 3 LLSASSAHRWLNCPPSAR--LEEGFPDTSSEAAAEGTAAHELAELKLRKYLDPESKRPTNIELKKLKKSEEYDDEMADYV 80 (372)
T ss_pred cCCcccchhhhcCChhHH--hhccCCCCCCHHHHHhHHHHHHHHHHHHHhcCCccccccchhhccccCCCcCCHHHHHHH
Confidence 366666666666765433 3334454 578999999999988887664332210 0 0112232222
Q ss_pred HHHHHHHHHHhH---cC-cEEEEEEEE--EECCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCChhhccchhhHH
Q 015510 177 FNSITGVNQLLF---EG-LTRELPILG--FIKGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAESQKRNGRLQL 250 (405)
Q Consensus 177 ln~i~~l~~L~~---~G-~~REl~V~G--~i~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~~~~~~~~lQL 250 (405)
-..+.-+..++. .+ +.-|-.|.. ++.+ -.|..|-|-+.++ .+.|+|+|+|+--.+ ..-.--||
T Consensus 81 ~~Yvd~v~e~~~~~~~~~v~vEqrvd~s~~vp~--~fGT~D~vii~~~----~L~IiDlKyG~GV~V-----~Ae~NpQl 149 (372)
T PF10926_consen 81 DDYVDYVRELIEEAKDPEVLVEQRVDFSRYVPE--GFGTADCVIIADD----TLHIIDLKYGKGVPV-----SAEENPQL 149 (372)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEEecccccCCC--CCCceeEEEEeCC----eEEEEECCCCCCCcc-----cCCCCHHH
Confidence 222233333333 33 344444432 2333 5688888888854 899999999996322 23556799
Q ss_pred HHHHHHHHHh
Q 015510 251 MCYKYMWDNL 260 (405)
Q Consensus 251 mlY~~ll~~L 260 (405)
|+|.+-.-+.
T Consensus 150 ~lYALGAl~~ 159 (372)
T PF10926_consen 150 MLYALGALEQ 159 (372)
T ss_pred HHHHHHHHHH
Confidence 9998655443
No 25
>PRK09709 exonuclease VIII; Reviewed
Probab=95.91 E-value=0.018 Score=64.40 Aligned_cols=153 Identities=17% Similarity=0.112 Sum_probs=93.7
Q ss_pred hHHHhhcCCCccccccCCccccccceeeeeecCCc-cccHHHHHHHHHHH-HHHHhhc-cceeeee----ccc---h---
Q 015510 103 LLDRFRKNRALSVTDVTDTEWCEKKMEFNLLFGSK-KVNKVMKVGRARHA-ELEKEVT-EKVKVRV----RST---E--- 169 (405)
Q Consensus 103 pl~rfr~k~~LSVTdL~~~~WCElq~~Y~l~~g~~-~~t~am~~Gt~iH~-~LE~e~~-~~v~v~i----~t~---e--- 169 (405)
|.+.|+.-..+|=|.|....-|+.-|+|+.....+ +.|++|..|+.+|. +||.+.. ...-+.. .+. +
T Consensus 615 pNeeYHA~~aISSSqLk~i~~SPA~y~~r~~~p~~~E~TkALdfGtA~H~LVLEPe~F~kEfvV~Pe~~rRTkeGKee~k 694 (877)
T PRK09709 615 SNENYHAGPGVSKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLEPEEFSNRFIVAPEFNRRTNAGKEEEK 694 (877)
T ss_pred CHHHhcCCCCcCHHHHHHHhcCHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhCcccccceEEeccccccccccchHHHH
Confidence 35777777789999999999999999888843333 36999999999998 5555421 1111110 111 0
Q ss_pred ----------------hHH--HHHHHHHHHH---HHHHhH-cCcEEEEEEEEE--ECCEEEEEEEeEEeCCCCCCCCCcE
Q 015510 170 ----------------DIW--AVKLFNSITG---VNQLLF-EGLTRELPILGF--IKGVWMVGVIDEIQMPVKETARNPI 225 (405)
Q Consensus 170 ----------------d~w--a~klln~i~~---l~~L~~-~G~~REl~V~G~--i~G~~v~GIIDeL~~~~~~~~~~l~ 225 (405)
+.| +..+...+.. ...|+. .|. .|.-++.. ..|+++++.+|.+. +. ..+
T Consensus 695 af~~~c~~~GKtvIt~ddyd~a~~MadAV~ahP~a~~LL~s~G~-aEvSifW~DeETGL~cK~RPD~l~--p~----~~i 767 (877)
T PRK09709 695 AFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGH-AESSIYWEDPETGILCRCRPDKII--PE----FHW 767 (877)
T ss_pred HHHHHHHhcCceecCHHHHHHHHHHHHHHHhChhHHHHhhCCCc-eeEEEEeecCCCCceEEEEcceec--CC----Cce
Confidence 111 1222222221 122444 355 46666654 35999999999975 22 458
Q ss_pred EEeecccCCCC-CCChhhccchhhHHHHHHHHHHHhhc
Q 015510 226 LVDTKTRAQYT-LPAESQKRNGRLQLMCYKYMWDNLAA 262 (405)
Q Consensus 226 I~D~KTR~~~~-lP~~~~~~~~~lQLmlY~~ll~~L~~ 262 (405)
|+|+||-.... .-.......-.+|..+|...+..+..
T Consensus 768 IvDLKTTad~~~F~Rsi~~ygYHvQAAfY~DG~raatG 805 (877)
T PRK09709 768 IMDVKTTADIQRFKTAYYDYRYHVQDAFYSDGYEAQFG 805 (877)
T ss_pred EEEeccccCHHHHHHHHHHcCCcccHHHHHHHHHHhhC
Confidence 99999986321 00111234556999999988877543
No 26
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.59 E-value=0.051 Score=61.69 Aligned_cols=214 Identities=18% Similarity=0.171 Sum_probs=120.5
Q ss_pred CCCccccccCCccccccceeeeeecCC-ccccHHHHHHHHHHHHHHHhhccce-ee---eec--c---------------
Q 015510 110 NRALSVTDVTDTEWCEKKMEFNLLFGS-KKVNKVMKVGRARHAELEKEVTEKV-KV---RVR--S--------------- 167 (405)
Q Consensus 110 k~~LSVTdL~~~~WCElq~~Y~l~~g~-~~~t~am~~Gt~iH~~LE~e~~~~v-~v---~i~--t--------------- 167 (405)
...+|.|.+.+..-|.++-...-..+. ...|.+|..|+.+|++++..+.... .+ ... +
T Consensus 182 D~Lis~TtVasS~~C~Rr~VL~erfr~~n~~t~~mllGtIvHevfQ~al~qk~~~~~~~~~~~~~q~~~~~s~l~~~~~~ 261 (1100)
T KOG1805|consen 182 DDLISGTTVASSLFCLRRTVLNERFRSGNSHTKAMLLGTIVHEVFQKALIQKSFAVDELILQASLQISKYISELYALGVS 261 (1100)
T ss_pred CccccccchhhccccchHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHcccC
Confidence 456899999999999998876543332 3568999999999999999977432 11 110 0
Q ss_pred ------chhHHHHHHHHHHHHHHH-------------HhHcC------cEEEEEEEEEECCEEEEEEEeEEeCCCCCC-C
Q 015510 168 ------TEDIWAVKLFNSITGVNQ-------------LLFEG------LTRELPILGFIKGVWMVGVIDEIQMPVKET-A 221 (405)
Q Consensus 168 ------~ed~wa~klln~i~~l~~-------------L~~~G------~~REl~V~G~i~G~~v~GIIDeL~~~~~~~-~ 221 (405)
..+...-++.+++..... +...+ +--|.-+|--.-| +.|.||--....... -
T Consensus 262 ~~~i~~el~~~l~~i~~~i~~f~~~~~s~~~~s~~~~~~~~~i~i~ev~DIEEniWsp~fG--LKG~iDatv~v~v~~~~ 339 (1100)
T KOG1805|consen 262 EDVIRNELEKYLPNICLWIEHFVHKPLSGSFPSKRGPLPSKSIQISEVIDIEENIWSPKFG--LKGKIDATVRVKVEEGK 339 (1100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCcchhcCCCCCCceeeeeeeehhhhhcccccC--CcceeeeEEEEEEccCc
Confidence 011112222333321100 00011 1112222222224 677777544321110 1
Q ss_pred CCcEEEeecccCCCCCCChhhccchhhHHHHHHHHHHHhhcCCCCchhhhhhcCCCCCCCCCHHHHHhhhcCCCCCCCHH
Q 015510 222 RNPILVDTKTRAQYTLPAESQKRNGRLQLMCYKYMWDNLAADNFPSMQFYDFFSLNSDCILSEEIIEKTSNAGFPAKTLG 301 (405)
Q Consensus 222 ~~l~I~D~KTR~~~~lP~~~~~~~~~lQLmlY~~ll~~L~~~~~~~~~~~~~~gLdpd~~~S~~~~~~~~~iGf~~~tl~ 301 (405)
..+.=.+.|||+... -..+.-|++||.+|+++= |+.+-.
T Consensus 340 eti~PLElKTGk~~~------sieh~~QvlLYtLl~seR-------------y~~~~~---------------------- 378 (1100)
T KOG1805|consen 340 ETIMPLELKTGKSSS------SIEHVGQVLLYTLLLSER-------------YEIPIL---------------------- 378 (1100)
T ss_pred ccccceeeecCCccc------chHHHHHHHHHHHHHHhh-------------ccCCcc----------------------
Confidence 135558899999752 157889999999888763 332110
Q ss_pred HHHHHHHHHhhhCCCCCCceEEEEEEccCCCeeeeeeeecCHHHHHH--HHHhhhhhhccccccCC---------CCCCC
Q 015510 302 DLVKYFRNMWNMLPASHNQLLLRYEFQKDQSLLGEEKFAFDYDLFNS--QIEVCLEFWKGEREASF---------TPLED 370 (405)
Q Consensus 302 dllry~~~~~~~lP~~~~~L~IeY~~~~d~~~~~~~~f~yd~~~L~~--~l~~~~~fW~G~Re~~~---------V~~ee 370 (405)
.-.|-|.- +|. .+.++-...++.. ..+.-|+||.-.+.... -+..+
T Consensus 379 ------------------~glL~YLk--~~~---~~~v~~~~~dlr~LL~~RN~lA~~~~h~~~~~~s~~~~~lpe~~~~ 435 (1100)
T KOG1805|consen 379 ------------------PGLLYYLK--DGQ---LVEVPSKHSDLRGLLMLRNRLANDLVHQEDVSASAQGGNLPEPILE 435 (1100)
T ss_pred ------------------cceEEEec--CCC---EeecccchHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCcccc
Confidence 11233332 221 2355566666665 34777787776544331 23466
Q ss_pred cccCCCCCCCCCCCCcCCC
Q 015510 371 RWKCRYCQFESVCPAVLKP 389 (405)
Q Consensus 371 ~~KCk~CeF~~~C~w~~~~ 389 (405)
..-|.+|.+...|.....+
T Consensus 436 d~~C~~cs~~~~c~~~~~~ 454 (1100)
T KOG1805|consen 436 DSSCDHCSHKTACSFFQKL 454 (1100)
T ss_pred ccccchHHHHHHHHHHHHH
Confidence 8899999999999864443
No 27
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.27 E-value=0.21 Score=58.20 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=41.7
Q ss_pred EEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCCh-h--------hccchhhHHHHHHHHHHHhhcCCCCc
Q 015510 204 VWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAE-S--------QKRNGRLQLMCYKYMWDNLAADNFPS 267 (405)
Q Consensus 204 ~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~-~--------~~~~~~lQLmlY~~ll~~L~~~~~~~ 267 (405)
=.++|+||-+-.-+ +.++|+||||---..-|.. . ....-.+|-.+|...|..+....++-
T Consensus 976 G~l~GfIDLvf~~~----gryyvlDyKSN~LG~~~~~Y~~~~l~~~m~~~~Y~LQy~lY~lALhR~L~~rl~~ 1044 (1087)
T TIGR00609 976 GLLKGFIDLVFEHN----GRYYILDYKSNWLGKDASDYSPEALTEAILKERYDLQYLIYTLALHRYLRKRLKD 1044 (1087)
T ss_pred cceeeeEEEEEEEC----CEEEEEEcccccCCCChhhcCHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhCCC
Confidence 36899999998764 4899999999654332322 1 12233699999998888887765443
No 28
>COG2251 Predicted nuclease (RecB family) [General function prediction only]
Probab=91.26 E-value=0.43 Score=50.39 Aligned_cols=133 Identities=17% Similarity=0.126 Sum_probs=72.7
Q ss_pred CccccccCCccccccceeeee---ecCCccccH-----HHHHHHHHHHHHHHhhcc---ce-eeeec-----cchhHHHH
Q 015510 112 ALSVTDVTDTEWCEKKMEFNL---LFGSKKVNK-----VMKVGRARHAELEKEVTE---KV-KVRVR-----STEDIWAV 174 (405)
Q Consensus 112 ~LSVTdL~~~~WCElq~~Y~l---~~g~~~~t~-----am~~Gt~iH~~LE~e~~~---~v-~v~i~-----t~ed~wa~ 174 (405)
..|+++|....-|+++-..+- ..|+..+.+ ....-..+|..++++++- .. .+.+. |.. .++.
T Consensus 2 ~~~~s~l~~~~Rc~rr~~l~~~~~~~~r~~~~~~l~kl~~~~~~~~~~~~~~~f~~~e~~~~~~~i~~r~~~t~~-~~~~ 80 (474)
T COG2251 2 LYSASDLLAYQRCQRRALLRTFDARLGRGPPVAVLLKLPQERAALINDHELKEFQLREEETAKRLIIGRAAYTGT-LMAA 80 (474)
T ss_pred cccHHHHHHHHhhhhhHHHHHHHHhhccCchHHHHHHHhHHHHHHhhHHHHhhhhhcccccccceeeccccccHH-HHHh
Confidence 358899999999999754332 223322211 123334566777776641 11 11111 111 1111
Q ss_pred HHHHHHHHHHHHhHcCcEEEEEEEEEECCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCChhhccchhhHHHHHH
Q 015510 175 KLFNSITGVNQLLFEGLTRELPILGFIKGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAESQKRNGRLQLMCYK 254 (405)
Q Consensus 175 klln~i~~l~~L~~~G~~REl~V~G~i~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~~~~~~~~lQLmlY~ 254 (405)
--+.+.. .-|..++-.-..++- +..+.+.|.+|=|..+.. ..+|+|.|-.+.+++ ...+|..+|+
T Consensus 81 ~a~~~~r--~~L~~n~~~~~~~~~--~~~~~~vg~pD~likdG~----~yriv~~kl~k~pK~-------~~~lq~a~ya 145 (474)
T COG2251 81 GADEIFR--EVLIANRAPLYQPVL--VGKIELVGFPDFLIKDGD----VYRIVDAKLAKRPKL-------PYRLQAAFYA 145 (474)
T ss_pred hHHHHHH--HHHHhCCcccccccc--cccceeecCCcceeccCc----EEEEeecccccCccc-------HHHHHHHHHH
Confidence 1111111 113333322222211 112268999999988432 789999999998754 5889999999
Q ss_pred HHHHHh
Q 015510 255 YMWDNL 260 (405)
Q Consensus 255 ~ll~~L 260 (405)
.+|..+
T Consensus 146 ~~La~~ 151 (474)
T COG2251 146 LLLAKS 151 (474)
T ss_pred HHHHhc
Confidence 998775
No 29
>PF08696 Dna2: DNA replication factor Dna2; InterPro: IPR014808 Dna2 is a DNA replication factor with single-stranded DNA-dependent ATPase, ATP-dependent nuclease, (5'-flap endonuclease) and helicase activities. It is required for Okazaki fragment processing and is involved in DNA repair pathways []. ; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication
Probab=90.95 E-value=0.16 Score=48.43 Aligned_cols=49 Identities=22% Similarity=0.409 Sum_probs=41.1
Q ss_pred CCCccccccCCccccccceeeeeec-CCccccHHHHHHHHHHHHHHHhhc
Q 015510 110 NRALSVTDVTDTEWCEKKMEFNLLF-GSKKVNKVMKVGRARHAELEKEVT 158 (405)
Q Consensus 110 k~~LSVTdL~~~~WCElq~~Y~l~~-g~~~~t~am~~Gt~iH~~LE~e~~ 158 (405)
..-+|+|.+....+|.+|....-.. +....+++|-.|+.+|..++..+.
T Consensus 57 D~LiS~T~Va~s~~C~RravL~er~~~~~~~s~~ml~GtIvHelfQ~~l~ 106 (209)
T PF08696_consen 57 DILISATSVASSFFCPRRAVLQERFKGPGESSKPMLIGTIVHELFQKALR 106 (209)
T ss_pred CceecceeeecccccccHHHHHHHhcCCCCCChhheeeeeHHHHHHHHHh
Confidence 4469999999999999999877654 323468999999999999999985
No 30
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=90.75 E-value=0.54 Score=55.42 Aligned_cols=58 Identities=17% Similarity=0.099 Sum_probs=40.7
Q ss_pred EEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCCh-h--------hccchhhHHHHHHHHHHHhhcCCCCc
Q 015510 206 MVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAE-S--------QKRNGRLQLMCYKYMWDNLAADNFPS 267 (405)
Q Consensus 206 v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~-~--------~~~~~~lQLmlY~~ll~~L~~~~~~~ 267 (405)
++|+||-+-.-. +.++|+||||---..-|.. . ....-.+|-.+|...|.++....++-
T Consensus 1062 l~GfIDLvf~~~----gryyvlDyKSN~LG~~~~~Y~~~al~~am~~h~Y~LQy~lY~lALhR~L~~rl~~ 1128 (1181)
T PRK10876 1062 LKGFIDLVFRWQ----GRYYLLDYKSNWLGEDSSAYTQEAMAQAMQAHRYDLQYQLYTLALHRYLRHRLAD 1128 (1181)
T ss_pred ccceEEEEEEEC----CEEEEEEccccCCCCChhhcCHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhCCC
Confidence 889999998764 4899999998654332321 1 12233699999999998887765443
No 31
>PRK04247 hypothetical protein; Provisional
Probab=72.82 E-value=7 Score=38.37 Aligned_cols=85 Identities=22% Similarity=0.268 Sum_probs=58.2
Q ss_pred HHhHcC---cEEEEEEEEEECCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCChhhccchhhHHHHHHHHHHHhh
Q 015510 185 QLLFEG---LTRELPILGFIKGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAESQKRNGRLQLMCYKYMWDNLA 261 (405)
Q Consensus 185 ~L~~~G---~~REl~V~G~i~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~~~~~~~~lQLmlY~~ll~~L~ 261 (405)
.|+..| +.||.++- .|.||-|-..++ +.++|+++|+|+.. ..+-.|+.-|-..+.+-.
T Consensus 142 ~li~~G~~~l~rE~~t~--------~G~IDila~D~~---G~lViVEvKrr~~~--------~~~V~Ql~rY~~~~~~~~ 202 (238)
T PRK04247 142 DLIEEGFRPLAREYPTP--------AGIIDILGRDKD---GNLVVLELKRRRAG--------LSAVSQLKRYVEALRELH 202 (238)
T ss_pred HHHcCCCEEEEEecccC--------CCceeEEEECCC---CCEEEEEEEEccCC--------hhHHHHHHHHHHHHHhhc
Confidence 555667 67887753 489999999865 48999999999753 477889999987775432
Q ss_pred cCCCCchhhhhhcCCCCCCCCCHHHHHhhhcCCCC
Q 015510 262 ADNFPSMQFYDFFSLNSDCILSEEIIEKTSNAGFP 296 (405)
Q Consensus 262 ~~~~~~~~~~~~~gLdpd~~~S~~~~~~~~~iGf~ 296 (405)
.. .-+|+-....|++..+.-+..-|++
T Consensus 203 ~~--------~VRGilvAp~i~~~A~~ll~~~Gle 229 (238)
T PRK04247 203 GD--------KVRGILVAPSITDRARRLLEKEGLE 229 (238)
T ss_pred CC--------CcEEEEECCcCCHHHHHHHHHcCCe
Confidence 11 1245545556666666655555654
No 32
>PF01939 DUF91: Protein of unknown function DUF91; InterPro: IPR002793 The function of these prokaryotic proteins is unknown. Computational analysis suggests that they may form a restriction endonuclease-like fold, similar to that found in a variety of endonucleases and DNA repair enzymes [].; PDB: 2VLD_A.
Probab=66.48 E-value=14 Score=36.08 Aligned_cols=67 Identities=27% Similarity=0.362 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhHcC---cEEEEEEEEEECCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCChhhccchhhHHH
Q 015510 175 KLFNSITGVNQLLFEG---LTRELPILGFIKGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAESQKRNGRLQLM 251 (405)
Q Consensus 175 klln~i~~l~~L~~~G---~~REl~V~G~i~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~~~~~~~~lQLm 251 (405)
.|-++|..--.++..| +.||.++. .|.||-|-...+ ++++|+++|-++.. ..+-.|+.
T Consensus 108 dL~~~i~~~p~lie~g~~~i~rE~~t~--------~G~IDiL~~D~~---G~~VVIElKR~~a~--------~~aV~QL~ 168 (228)
T PF01939_consen 108 DLQDLIAENPELIEEGLRLIEREYPTP--------IGRIDILAKDKD---GNLVVIELKRRRAD--------RDAVEQLL 168 (228)
T ss_dssp HHHHHHHH-GGGT-TT-EEEEEEEEET--------TEEEEEEEE-TT---S-EEEEEE-SS-B---------HHHHHHHH
T ss_pred HHHHHHHhCHHHhCCCCEEEEEEEeCC--------CCceeEEEECCC---CCEEEEEEEeccCC--------HHHHHHHH
Confidence 3444554444567777 78888762 389999999876 58999999977543 57888999
Q ss_pred HHHHHHHHh
Q 015510 252 CYKYMWDNL 260 (405)
Q Consensus 252 lY~~ll~~L 260 (405)
-|.-++.+-
T Consensus 169 rY~~~l~~~ 177 (228)
T PF01939_consen 169 RYVELLKRD 177 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 998777654
No 33
>PF07708 Tash_PEST: Tash protein PEST motif; InterPro: IPR011695 The PEST motif is found in one or more copies in Tash AT-hook proteins from Theileria annulata. Tash proteins are transported to the host nucleus and are thought to be involved in pathogenesis []. The PEST motif is often found in conjunction with the (IPR007480 from INTERPRO), whose function is unknown. These repeats may be part of the PEST motif (a signal for rapid proteolytic degradation) [], though this is not proven. This motif is also found in other T. annulata proteins, which have no other known domains.
Probab=44.97 E-value=6.8 Score=23.86 Aligned_cols=12 Identities=58% Similarity=0.808 Sum_probs=10.6
Q ss_pred CCCeeeeChhhH
Q 015510 22 DIPIEIVSEEEM 33 (405)
Q Consensus 22 ~~~~~~~~~~~~ 33 (405)
-||+||-||||+
T Consensus 7 ti~vEi~SDeee 18 (19)
T PF07708_consen 7 TIPVEIGSDEEE 18 (19)
T ss_pred eEEEEecccccC
Confidence 489999999986
No 34
>PRK14686 hypothetical protein; Provisional
Probab=31.94 E-value=74 Score=27.74 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=21.1
Q ss_pred EEEEeEEeCCCCCCCCCcEEEeecccCCCC
Q 015510 207 VGVIDEIQMPVKETARNPILVDTKTRAQYT 236 (405)
Q Consensus 207 ~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~ 236 (405)
.|=||-|-...+ .++.+++|||+...
T Consensus 35 ~GEIDlIa~~~~----~lvFVEVKtR~~~~ 60 (119)
T PRK14686 35 KAEIDIIAQKGN----ILVIVEVKTRSSSD 60 (119)
T ss_pred CCcEEEEECcCC----EEEEEEEEecCCCC
Confidence 588898877643 89999999999765
No 35
>PRK14682 hypothetical protein; Provisional
Probab=31.42 E-value=72 Score=27.83 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=22.4
Q ss_pred EEEEeEEeCCCCCCCCCcEEEeecccCCCCCCC
Q 015510 207 VGVIDEIQMPVKETARNPILVDTKTRAQYTLPA 239 (405)
Q Consensus 207 ~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~ 239 (405)
.|=||-|-...+ .+..+++|||+......
T Consensus 35 ~GEIDiIa~~~~----~lvFVEVKtR~~~~~g~ 63 (117)
T PRK14682 35 YGEIDIIALDKD----TLVFIEVKYRSKTKFAQ 63 (117)
T ss_pred CCcEEEEEeeCC----EEEEEEEEecCCCCCCC
Confidence 578888877643 79999999999765443
No 36
>PF13366 PDDEXK_3: PD-(D/E)XK nuclease superfamily
Probab=30.78 E-value=2.2e+02 Score=25.00 Aligned_cols=60 Identities=22% Similarity=0.242 Sum_probs=46.2
Q ss_pred HHHhHcC--cEEEEEEEEEECCEEEEE--EEeEEeCCCCCCCCCcEEEeecccCCCCCCChhhccchhhHHHHHHHHH
Q 015510 184 NQLLFEG--LTRELPILGFIKGVWMVG--VIDEIQMPVKETARNPILVDTKTRAQYTLPAESQKRNGRLQLMCYKYMW 257 (405)
Q Consensus 184 ~~L~~~G--~~REl~V~G~i~G~~v~G--IIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~~~~~~~~lQLmlY~~ll 257 (405)
..|...| ..||.++--+++|..+.. ++|-|.- +-+|++.|+-..- ...+.-|++-|=.+.
T Consensus 33 ~EL~~~gi~~~~q~~l~v~Ykg~~l~~~~r~DllV~-------~~vIvElKav~~l-------~~~h~aQll~YLk~~ 96 (118)
T PF13366_consen 33 IELEKRGIPVERQVPLPVYYKGQPLGEGYRADLLVE-------NKVIVELKAVEEL-------NPVHEAQLLNYLKAT 96 (118)
T ss_pred HHHHHCCCCeEEeeeeeeEECCEEeccceEeeEEEc-------CeEEEEEeeHhhc-------CHHHHHHHHHHHHHh
Confidence 3455666 689999999999999988 8888873 3489999985532 458899999996554
No 37
>PRK14684 hypothetical protein; Provisional
Probab=30.48 E-value=79 Score=27.74 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=21.3
Q ss_pred EEEEeEEeCCCCCCCCCcEEEeecccCCCCC
Q 015510 207 VGVIDEIQMPVKETARNPILVDTKTRAQYTL 237 (405)
Q Consensus 207 ~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~l 237 (405)
.|=||-|-...+ .++.+++|||+....
T Consensus 36 ~GEIDiIa~~~~----~lvFVEVK~R~~~~~ 62 (120)
T PRK14684 36 QGEIDLIMSDQS----MLVFIEVRYRRFSDF 62 (120)
T ss_pred CCeEEEEEEeCC----EEEEEEEeEcCCCCC
Confidence 588888887643 799999999987543
No 38
>PRK14688 hypothetical protein; Provisional
Probab=29.98 E-value=73 Score=28.00 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=21.5
Q ss_pred EEEEeEEeCCCCCCCCCcEEEeecccCCCCC
Q 015510 207 VGVIDEIQMPVKETARNPILVDTKTRAQYTL 237 (405)
Q Consensus 207 ~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~l 237 (405)
.|=||-|-...+ .++.+++|||+....
T Consensus 36 ~GEIDiIa~~~~----~lVFVEVK~R~~~~~ 62 (121)
T PRK14688 36 EGEIDIVGQDGE----YLVFIEVRTKRRLGY 62 (121)
T ss_pred CCcEeEEEeeCC----EEEEEEEEecCCCCC
Confidence 588888887644 799999999987643
No 39
>PRK14680 hypothetical protein; Provisional
Probab=29.01 E-value=83 Score=28.16 Aligned_cols=27 Identities=26% Similarity=0.160 Sum_probs=21.1
Q ss_pred EEEEeEEeCCCCCCCCCcEEEeecccCCCCC
Q 015510 207 VGVIDEIQMPVKETARNPILVDTKTRAQYTL 237 (405)
Q Consensus 207 ~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~l 237 (405)
.|=||-|-...+ .++.+++|||+....
T Consensus 36 ~GEIDiIa~~~~----~lVFVEVKtR~~~~~ 62 (134)
T PRK14680 36 GLELDIVCEDGD----TIVFVEVKTRAAHGL 62 (134)
T ss_pred CCeEEEEEEeCC----EEEEEEEEecCCCCC
Confidence 478888877643 799999999987554
No 40
>TIGR00252 conserved hypothetical protein TIGR00252. the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment
Probab=28.47 E-value=97 Score=27.11 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=21.1
Q ss_pred EEEEeEEeCCCCCCCCCcEEEeecccCCCCC
Q 015510 207 VGVIDEIQMPVKETARNPILVDTKTRAQYTL 237 (405)
Q Consensus 207 ~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~l 237 (405)
.|=||-|-...+ .++.+++|||+....
T Consensus 36 ~GEIDiIa~~~~----~lvFVEVK~R~~~~~ 62 (119)
T TIGR00252 36 WGEIDLIMHDTK----TIAFVEVRTRSGGNY 62 (119)
T ss_pred CCcEEEEEeeCC----EEEEEEEEecCCCCC
Confidence 478888877643 799999999987653
No 41
>PRK14681 hypothetical protein; Provisional
Probab=27.61 E-value=1.1e+02 Score=28.33 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=22.0
Q ss_pred EEEEeEEeCCCCCCCCCcEEEeecccCCCCC
Q 015510 207 VGVIDEIQMPVKETARNPILVDTKTRAQYTL 237 (405)
Q Consensus 207 ~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~l 237 (405)
.|-||-|-...+ +.++++++|||+....
T Consensus 73 ~GEIDIIa~d~~---~~LVFVEVKtR~~~~~ 100 (158)
T PRK14681 73 YGELDIVALNPE---YTIVFVEVKTRRSMHY 100 (158)
T ss_pred CCcEEEEEEcCC---ceEEEEEEEeccCCCC
Confidence 488998887643 3799999999987654
No 42
>PRK12497 hypothetical protein; Reviewed
Probab=27.25 E-value=80 Score=27.37 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=20.9
Q ss_pred EEEEeEEeCCCCCCCCCcEEEeecccCCCCC
Q 015510 207 VGVIDEIQMPVKETARNPILVDTKTRAQYTL 237 (405)
Q Consensus 207 ~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~l 237 (405)
.|=||-|-... ..++.+++|||+....
T Consensus 36 ~GEIDiIa~~~----~~lvFVEVK~R~~~~~ 62 (119)
T PRK12497 36 FGEIDLIARDG----DTLVFVEVKTRRSDRF 62 (119)
T ss_pred CCcEeeeEEeC----CEEEEEEEEeccCCCC
Confidence 47788887763 3789999999998654
No 43
>PRK14679 hypothetical protein; Provisional
Probab=25.70 E-value=66 Score=28.60 Aligned_cols=28 Identities=29% Similarity=0.261 Sum_probs=22.0
Q ss_pred EEEEeEEeCCCCCCCCCcEEEeecccCCCCCC
Q 015510 207 VGVIDEIQMPVKETARNPILVDTKTRAQYTLP 238 (405)
Q Consensus 207 ~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP 238 (405)
.|-||-|-...+ .++.+++|||+...-|
T Consensus 45 ~GEIDiIa~~~~----~lVFVEVKtR~~~~~~ 72 (128)
T PRK14679 45 GGEIDLIVRRGR----TIAFVEVKARATLDAA 72 (128)
T ss_pred CCeEEEEEEeCC----EEEEEEEEecCCCCCh
Confidence 488888877643 8999999999876544
No 44
>PRK14675 hypothetical protein; Provisional
Probab=25.63 E-value=1.6e+02 Score=25.97 Aligned_cols=40 Identities=30% Similarity=0.308 Sum_probs=28.4
Q ss_pred HHhHcC---cEEEEEEEEEECCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCC
Q 015510 185 QLLFEG---LTRELPILGFIKGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYT 236 (405)
Q Consensus 185 ~L~~~G---~~REl~V~G~i~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~ 236 (405)
.|...| ++|+..+- .|-||-|-...+ .+.++++|||+...
T Consensus 21 ~L~~~G~~il~rn~r~~--------~GEIDlIa~d~~----~lvFVEVK~R~~~~ 63 (125)
T PRK14675 21 YLKGLRYKIVERNFRCR--------CGEIDIIARDGK----TLVFVEVKTRKNYA 63 (125)
T ss_pred HHHHCCCEEEEEEEeCC--------CCeEEEEEEeCC----EEEEEEEEeccCCC
Confidence 355667 45554431 688999888754 89999999998644
No 45
>PF04369 Lactococcin: Lactococcin-like family; InterPro: IPR007464 Bacteriocins are produced by bacteria to inhibit the growth of similar or closely related bacterial strains. The class II bacteriocins are small heat-stable proteins for which disulphide bonds are the only modification to the peptide. Lactococcin A and B are class-IId bacteriocins (one-peptide non-pediocin-like bacteriocin) [, ].; GO: 0042742 defense response to bacterium, 0005576 extracellular region
Probab=24.05 E-value=42 Score=26.29 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=14.2
Q ss_pred CCCCeeeeChhhHHHHHH
Q 015510 21 PDIPIEIVSEEEMALIDA 38 (405)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~ 38 (405)
+.+-++||||||.+-|.-
T Consensus 3 ~~~nf~~~sdeeL~~i~G 20 (60)
T PF04369_consen 3 NQLNFNILSDEELSKING 20 (60)
T ss_pred ccccceecCHHHHhhccC
Confidence 345689999999988863
No 46
>PRK14678 hypothetical protein; Provisional
Probab=22.97 E-value=92 Score=27.29 Aligned_cols=29 Identities=24% Similarity=0.341 Sum_probs=22.1
Q ss_pred EEEEeEEeCCCCCCCCCcEEEeecccCCCCCCCh
Q 015510 207 VGVIDEIQMPVKETARNPILVDTKTRAQYTLPAE 240 (405)
Q Consensus 207 ~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~ 240 (405)
.|-||-|-...+ .++.+++|||+... |..
T Consensus 36 ~GEIDiIa~~~~----~lvFVEVKtR~~~~-~~e 64 (120)
T PRK14678 36 AGEIDIVAREGD----QLVFVEVRTRRDQD-ALE 64 (120)
T ss_pred CCCEeeeEEeCC----EEEEEEEEECCCCC-ccc
Confidence 578888877643 79999999998765 433
No 47
>COG1637 Predicted nuclease of the RecB family [DNA replication, recombination, and repair]
Probab=22.70 E-value=2.6e+02 Score=27.82 Aligned_cols=66 Identities=24% Similarity=0.293 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhHcC---cEEEEEEEEEECCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCChhhccchhhHHH
Q 015510 175 KLFNSITGVNQLLFEG---LTRELPILGFIKGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAESQKRNGRLQLM 251 (405)
Q Consensus 175 klln~i~~l~~L~~~G---~~REl~V~G~i~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~~~~~~~~lQLm 251 (405)
.+.+.|..--+|+.+| ++||.+. =.|+||=+-...+ +++.++.+|-|+.. -.+-.||.
T Consensus 133 ~m~~~I~e~P~lleeG~~~v~~E~~t--------~~G~vDilg~De~---G~~viiElKR~ka~--------~~Av~QL~ 193 (253)
T COG1637 133 DMQELIAENPQLLEEGFRPVAREYQT--------AIGKVDILGRDER---GNIVIIELKRRKAG--------LSAVSQLK 193 (253)
T ss_pred HHHHHHhhChhhHhCcceeeeeeeec--------CcceeEEEEEcCC---CCEEEEEEecccCC--------chHHHHHH
Confidence 5566666666888888 5666654 4688899999876 59999999988753 36777877
Q ss_pred HHHHHHHH
Q 015510 252 CYKYMWDN 259 (405)
Q Consensus 252 lY~~ll~~ 259 (405)
=|-..|.+
T Consensus 194 RYv~~l~~ 201 (253)
T COG1637 194 RYVELLRE 201 (253)
T ss_pred HHHHHccc
Confidence 67555443
No 48
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=22.58 E-value=1.2e+02 Score=25.31 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=25.7
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCeeeeChhhHHHHHHHHhc
Q 015510 1 MSGSHADSTQSQDVNSANVTPDIPIEIVSEEEMALIDAALAA 42 (405)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (405)
|||.+.|-..+....-..+..++ +++||+.|.+-|-+
T Consensus 1 ms~~ngd~~~~~e~~~~~~~~e~-----~~~E~~~ins~LD~ 37 (83)
T PF03670_consen 1 MSGPNGDDGMSVEDGGEEEDDEF-----DEEEYAAINSMLDQ 37 (83)
T ss_pred CCCCCCCCCCCcccccccccccc-----cHHHHHHHHHHHHH
Confidence 78888877666555444444433 68999999887765
No 49
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=21.20 E-value=1.6e+02 Score=24.44 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=17.4
Q ss_pred EEEEeEEeCCCCCCCCCcEEEeecccCCCCCC
Q 015510 207 VGVIDEIQMPVKETARNPILVDTKTRAQYTLP 238 (405)
Q Consensus 207 ~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP 238 (405)
.|-||=|-...+ .+.++++|||+.....
T Consensus 26 ~GEIDiIa~~~~----~lvfVEVK~R~~~~~~ 53 (93)
T PF02021_consen 26 RGEIDIIARDGD----TLVFVEVKTRSSSSFG 53 (93)
T ss_dssp TEEEEEEEEETT----EEEEEEEEE-------
T ss_pred CCcEeEEEEEcc----cEEEEEEEEeeccccc
Confidence 388888888743 7899999999876543
No 50
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=20.81 E-value=33 Score=31.32 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=15.6
Q ss_pred ccCCCCCCCcccCCCCCCCC
Q 015510 362 EASFTPLEDRWKCRYCQFES 381 (405)
Q Consensus 362 e~~~V~~ee~~KCk~CeF~~ 381 (405)
++..+..++..+|.||||+.
T Consensus 21 ~~~e~~~~~~~~C~FCDia~ 40 (166)
T KOG4359|consen 21 EAAEKSPEPKSTCVFCDIAG 40 (166)
T ss_pred eccccccCCCCceEEEEeec
Confidence 44456667888999999986
No 51
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=20.50 E-value=39 Score=20.57 Aligned_cols=11 Identities=27% Similarity=1.005 Sum_probs=6.8
Q ss_pred ccCCCCCCCCC
Q 015510 372 WKCRYCQFESV 382 (405)
Q Consensus 372 ~KCk~CeF~~~ 382 (405)
.+|..|+|...
T Consensus 1 y~C~~C~y~t~ 11 (24)
T PF13909_consen 1 YKCPHCSYSTS 11 (24)
T ss_dssp EE-SSSS-EES
T ss_pred CCCCCCCCcCC
Confidence 47999999753
No 52
>PRK14685 hypothetical protein; Provisional
Probab=20.07 E-value=1.5e+02 Score=28.01 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=21.8
Q ss_pred EEEEeEEeCCCCCCCCCcEEEeecccCCCCC
Q 015510 207 VGVIDEIQMPVKETARNPILVDTKTRAQYTL 237 (405)
Q Consensus 207 ~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~l 237 (405)
.|-||-|-...+ .++.++||||+....
T Consensus 72 ~GEIDIIA~dg~----~LVFVEVKtR~~~~~ 98 (177)
T PRK14685 72 AGEIDLAMRDGE----VLVLVEVRARAHAGY 98 (177)
T ss_pred CCcEEEEEecCC----EEEEEEEeECCCCCC
Confidence 688999877654 799999999987554
Done!