Query 015510
Match_columns 405
No_of_seqs 141 out of 206
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 13:52:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u4q_B ATP-dependent helicase/ 99.3 6.5E-13 2.2E-17 150.0 5.6 148 110-259 787-991 (1166)
2 4ic1_A Uncharacterized protein 99.2 1.9E-11 6.5E-16 113.4 9.6 112 110-258 25-144 (206)
3 3l0a_A Putative exonuclease; R 99.0 1.3E-09 4.3E-14 105.6 11.2 140 111-261 17-185 (266)
4 3h4r_A Exodeoxyribonuclease 8; 98.7 1.6E-08 5.4E-13 97.7 6.2 149 103-260 3-191 (265)
5 3u4q_A ATP-dependent helicase/ 98.7 8.8E-08 3E-12 109.2 12.6 149 111-263 1012-1214(1232)
6 1w36_B RECB, exodeoxyribonucle 96.6 0.0045 1.5E-07 70.4 9.2 123 141-267 947-1128(1180)
7 1w36_C RECC, exodeoxyribonucle 96.1 0.013 4.4E-07 66.4 9.5 135 111-261 830-991 (1122)
8 2vld_A NUCS, UPF0286 protein p 55.6 15 0.00053 34.9 5.5 57 186-261 140-199 (251)
9 2jxf_A NS4B(40-69), genome pol 31.6 43 0.0015 21.6 3.0 18 169-186 8-25 (30)
10 3sm4_A Exonuclease; homologous 29.1 2.4E+02 0.0082 25.7 9.1 31 334-364 187-217 (229)
No 1
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=99.32 E-value=6.5e-13 Score=150.02 Aligned_cols=148 Identities=14% Similarity=0.011 Sum_probs=95.1
Q ss_pred CCCccccccCCccccccceeeeeecCCcccc----HHHHHHHHHHHHHHHhhcccee--eee--ccc-------------
Q 015510 110 NRALSVTDVTDTEWCEKKMEFNLLFGSKKVN----KVMKVGRARHAELEKEVTEKVK--VRV--RST------------- 168 (405)
Q Consensus 110 k~~LSVTdL~~~~WCElq~~Y~l~~g~~~~t----~am~~Gt~iH~~LE~e~~~~v~--v~i--~t~------------- 168 (405)
..++|||.|.++.-|+++|++.+..|.+++. .++..|+.+|.+||..+..... ... .+.
T Consensus 787 ~~~~S~S~le~~~~CP~~~f~~y~L~l~~~~~~~~~~~~~G~~~H~~Le~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 866 (1166)
T 3u4q_B 787 RIQGSVSRMETFNACPFSHFASHGLHLKERQFFKLEAPDIGQLFHSSLKLISDRLRDEKLDWRDLTKEQCELFSYDAVER 866 (1166)
T ss_dssp SBCCBHHHHHHHHHCHHHHHHHTTSCCCCCCCSSCCSHHHHHHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHhChHHHHHHhccCCCCccccCCCcchhhHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHH
Confidence 4479999999999999999999988877643 3799999999999998752110 000 000
Q ss_pred ---------------hhHHHHHHHHHHHH----HHHHhHcC----cEEEEEEE---------EEE---CCEEEEEEEeEE
Q 015510 169 ---------------EDIWAVKLFNSITG----VNQLLFEG----LTRELPIL---------GFI---KGVWMVGVIDEI 213 (405)
Q Consensus 169 ---------------ed~wa~klln~i~~----l~~L~~~G----~~REl~V~---------G~i---~G~~v~GIIDeL 213 (405)
...|..++..++.. +......+ ...|+.+- -.+ .++.|+|+||||
T Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~E~~f~~~~~~~~~~~~l~~g~~v~l~GrIDRi 946 (1166)
T 3u4q_B 867 LAPKLQKEILLSSNRHYYVKEKLQKIVTRVSGILSEHAKASGFVPIGLELGFGGKGPLPPLTFQLKNGCTMELVGRIDRV 946 (1166)
T ss_dssp HGGGSTTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEESSSSSSCCEEEEETTTEEEEEBEEEEEE
T ss_pred HHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEeeecccCCCCCCceEEEcCCCCEEEEEEEEeee
Confidence 01222333333332 21111223 44555431 011 248999999999
Q ss_pred eCCCCCCCCCcEEEeecccCCCCCCCh-hhccchhhHHHHHHHHHHH
Q 015510 214 QMPVKETARNPILVDTKTRAQYTLPAE-SQKRNGRLQLMCYKYMWDN 259 (405)
Q Consensus 214 ~~~~~~~~~~l~I~D~KTR~~~~lP~~-~~~~~~~lQLmlY~~ll~~ 259 (405)
+..+++...-+.|+|||||+.+ +.. ....+-.+||.+|..++..
T Consensus 947 D~~~~~~~~~~~IiDYKTg~~~--~~~~~~~~g~~lQL~~Y~~a~~~ 991 (1166)
T 3u4q_B 947 DKAESSKGLLLRIVAYKSSDKG--LDLAEVYYGLALQMLTYLDLSIT 991 (1166)
T ss_dssp EEEEETTEEEEEEEEEESSSCC--CCHHHHHTTSCCHHHHHHHHHHH
T ss_pred eccccCCceEEEEEEeCCCCCC--CCHHHHhhcHHHHHHHHHHHHHH
Confidence 9986631112899999999864 332 3455668999999988755
No 2
>4ic1_A Uncharacterized protein; CAS4, crispr, MCSG, exonuclease, structural genomics, unknow function; 2.35A {Sulfolobus solfataricus}
Probab=99.24 E-value=1.9e-11 Score=113.41 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=78.2
Q ss_pred CCCccccccCCccccccceeeeeecCCc----cccHHHHHHHHHHHHHHHhhccceeeeeccchhHHHHHHHHHHHHHHH
Q 015510 110 NRALSVTDVTDTEWCEKKMEFNLLFGSK----KVNKVMKVGRARHAELEKEVTEKVKVRVRSTEDIWAVKLFNSITGVNQ 185 (405)
Q Consensus 110 k~~LSVTdL~~~~WCElq~~Y~l~~g~~----~~t~am~~Gt~iH~~LE~e~~~~v~v~i~t~ed~wa~klln~i~~l~~ 185 (405)
.+.+-||+ +..|++|.+|....+.. ..+..|..|+.+|..++..+...
T Consensus 25 ~~~i~vs~---~~~CpR~~~l~~~~~~~~~~E~~~~~~~~G~~~H~~~~~~~~~~------------------------- 76 (206)
T 4ic1_A 25 ENTIYVTD---LVRCPRRVRYESEYKELAISQVYAPSAILGDILHLGLESVLKGN------------------------- 76 (206)
T ss_dssp TTEEEHHH---HTSCHHHHHHHHHCHHHHGGGGGCHHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred CCeEEEeH---HhcCCCHHHHHHHccccccccccChHHHHHHHHHHHHHHHHHhc-------------------------
Confidence 34566766 57999999887653221 13688999999999888765321
Q ss_pred HhHcCcEEEEEEEEEE--C--CEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCChhhccchhhHHHHHHHHHH
Q 015510 186 LLFEGLTRELPILGFI--K--GVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAESQKRNGRLQLMCYKYMWD 258 (405)
Q Consensus 186 L~~~G~~REl~V~G~i--~--G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~~~~~~~~lQLmlY~~ll~ 258 (405)
.|...|+++.+.+ + ++.|+|+||+|...++ +.+.|+|+||++.+. . .....+..||++|.+++.
T Consensus 77 ---~~v~~Ev~i~~~~~v~~~~~~l~GriD~i~~~~~---g~~~ive~Ktg~~~~--~-~~~~~~~~Ql~~Y~~~l~ 144 (206)
T 4ic1_A 77 ---FNAETEVETLREINVGGKVYKIKGRADAIIRNDN---GKSIVIEIKTSRSDK--G-LPLIHHKMQLQIYLWLFS 144 (206)
T ss_dssp ---SCEEEEEEEEEEEEETTEEEEEEEEEEEEEC-------CCEEEEEECCSCCT--T-SSCHHHHHHHHHHHHHHT
T ss_pred ---cCccceEEEEEEEEeCCeEEEEEEEEEEEEEcCC---CCEEEEEEecCCCCc--c-cccHHHHHHHHHHHHHHH
Confidence 1345666666554 3 4789999999998754 488999999998752 1 224567799999998775
No 3
>3l0a_A Putative exonuclease; RER070207002219, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; HET: PE4; 2.19A {Eubacterium rectale}
Probab=99.01 E-value=1.3e-09 Score=105.64 Aligned_cols=140 Identities=16% Similarity=0.083 Sum_probs=96.2
Q ss_pred CCccccccCCcc------ccccceeeeeecCC-ccccHHHHHHHHHHHHHHHhhccceee---e-eccc---hh--HHHH
Q 015510 111 RALSVTDVTDTE------WCEKKMEFNLLFGS-KKVNKVMKVGRARHAELEKEVTEKVKV---R-VRST---ED--IWAV 174 (405)
Q Consensus 111 ~~LSVTdL~~~~------WCElq~~Y~l~~g~-~~~t~am~~Gt~iH~~LE~e~~~~v~v---~-i~t~---ed--~wa~ 174 (405)
..+|||.+.... -||-...-.+-..- +.+++||..|+.+|.-||. +|+.... + +.++ .. .-|.
T Consensus 17 ~y~S~S~~k~f~~~~~~~~cea~~~a~l~g~~~~~~~~all~Gs~vH~~~E~-~~~~F~~~~p~~~~~~g~l~~~~~~a~ 95 (266)
T 3l0a_A 17 EYMSVSGYKDFAGTYGKMPCEFYGMEKLNGRWEDEKSTALLVGSYVDSYFEG-SLDQFKKDNPEIFTQKGELKANFKQAE 95 (266)
T ss_dssp HCEEHHHHHHHHCBTTBCCCHHHHHHHHHTSCCCCCCHHHHHHHHHHHHHHT-CHHHHHHHCGGGBCTTSSBCHHHHHHH
T ss_pred ceEcHHHHHHHHhhcccCCCHHHHHHHHcCCCCcCCCcHHHHhHHHHHHHHH-HHHHHHHhChhhccchhhHHHHHHHHH
Confidence 369999999998 99998877775322 3478899999999999997 5532211 1 1111 11 2234
Q ss_pred HHHHHHH---HHHHHhHcCcEEEEEEEEEECCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCCh----------h
Q 015510 175 KLFNSIT---GVNQLLFEGLTRELPILGFIKGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAE----------S 241 (405)
Q Consensus 175 klln~i~---~l~~L~~~G~~REl~V~G~i~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~----------~ 241 (405)
++.+.+. ....|+ .| .+|+.+.|.+.|+.++|.||.|... . .|+|+||.+... |.. .
T Consensus 96 ~Mi~~l~~dp~f~~l~-~G-ekEv~~tge~~Gv~~KgriD~L~~~------~-~ivDlKTt~~~~-~~~~~~~~~~~~~i 165 (266)
T 3l0a_A 96 EIIARIERDEYFMKYM-SG-QKQVIMTGELFGAKWKIKMDSYIPG------V-AIVDLKVMASIT-DLKWVKDIGYLDFV 165 (266)
T ss_dssp HHHHHHHTCHHHHHHT-TS-EEEEEEEEEETTEEEEEEEEEEETT------T-EEEEEEEESCSS-CCEEETTTEEECHH
T ss_pred HHHHHHHcChhHHHHh-cC-CeEEEEEEeECCEEEEEEeEEecCC------C-eEEEeccCCccC-hhhccccccccchh
Confidence 4444333 234455 56 7999999999999999999998744 2 899999987521 111 1
Q ss_pred hccchhhHHHHHHHHHHHhh
Q 015510 242 QKRNGRLQLMCYKYMWDNLA 261 (405)
Q Consensus 242 ~~~~~~lQLmlY~~ll~~L~ 261 (405)
..-.-.+|+-+|+.++....
T Consensus 166 ~~~gY~~QmA~Y~ell~q~~ 185 (266)
T 3l0a_A 166 RYWGYDIQGAVYQEIVRQNT 185 (266)
T ss_dssp HHTTHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHh
Confidence 12366899999999998863
No 4
>3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase; 2.80A {Escherichia coli}
Probab=98.68 E-value=1.6e-08 Score=97.73 Aligned_cols=149 Identities=15% Similarity=0.094 Sum_probs=92.7
Q ss_pred hHHHhhcCCCccccccCCccccccceeeeeecCCcc-ccHHHHHHHHHHHHHHH-h-hccceee----eeccch---h--
Q 015510 103 LLDRFRKNRALSVTDVTDTEWCEKKMEFNLLFGSKK-VNKVMKVGRARHAELEK-E-VTEKVKV----RVRSTE---D-- 170 (405)
Q Consensus 103 pl~rfr~k~~LSVTdL~~~~WCElq~~Y~l~~g~~~-~t~am~~Gt~iH~~LE~-e-~~~~v~v----~i~t~e---d-- 170 (405)
|.+.|+.-..||.|.|....-|+..|+|......++ +|+||..|+.+|..+.. + +....-+ .-.|+. +
T Consensus 3 ~~e~YHa~~aiS~S~l~~~~~~Pa~~~~~~~~~~~~~~s~A~~~Gt~~H~~vLep~~f~~~f~~~p~~~~rT~~gK~~~~ 82 (265)
T 3h4r_A 3 HMENYHAGPGISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLELEEFSNRFIVAPEFNRRTNAGKEEEK 82 (265)
T ss_dssp --------CCBCHHHHHHHHHCHHHHHHHTTSCCCCCCCSCCTHHHHHHHHHSSHHHHTCC-------------------
T ss_pred ChHHhcCCCCCCHHHHHHHhcCcHHHHHhccCCCCCCCcHHHHHHHHHHHHHhCcccccceEEEccccccccchhhHHHH
Confidence 346677667899999999999999999988765543 68999999999996543 2 2121111 111111 0
Q ss_pred HHH----------------HHHHHHHHH------HHHHhHcCcEEEEEEEEEE--CCEEEEEEEeEEeCCCCCCCCCcEE
Q 015510 171 IWA----------------VKLFNSITG------VNQLLFEGLTRELPILGFI--KGVWMVGVIDEIQMPVKETARNPIL 226 (405)
Q Consensus 171 ~wa----------------~klln~i~~------l~~L~~~G~~REl~V~G~i--~G~~v~GIIDeL~~~~~~~~~~l~I 226 (405)
.|. .++..++.. +..|+..+-..|+.|+|.. .|+.++|.||+|. ++ .++|
T Consensus 83 ~~~~~~~~~gk~~i~~~~~~~~~~m~~av~~~p~~~~l~~~~g~aEvsi~~~~~~~G~~~kgriD~l~--~~----~~~i 156 (265)
T 3h4r_A 83 AFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIYWEDPETGILCRCRPDKII--PE----FHWI 156 (265)
T ss_dssp ---------------CCCTTHHHHHHHHHTTSHHHHHHHSSSCBSSCCEEEECTTTCCEEEECCSEEE--GG----GTEE
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHHHHHcChHHHHHhccCCCceeEEEEEecCCCceEEEEEEEEE--CC----CcEE
Confidence 110 112222222 3334544445799999986 4999999999996 22 5799
Q ss_pred EeecccCCCCCCChh--h--ccchhhHHHHHHHHHHHh
Q 015510 227 VDTKTRAQYTLPAES--Q--KRNGRLQLMCYKYMWDNL 260 (405)
Q Consensus 227 ~D~KTR~~~~lP~~~--~--~~~~~lQLmlY~~ll~~L 260 (405)
+|+||.+.+ ... . .....+|+.+|+.++..+
T Consensus 157 vD~KT~~~~---~~~~~~i~~~~Y~~Q~A~Y~~~l~~~ 191 (265)
T 3h4r_A 157 MDVKTTADI---QRFKTAYYDYRYHVQDAFYSDGYEAQ 191 (265)
T ss_dssp EEEEEESCH---HHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred EEeCCCCCH---HHHHhhhccCCHHHHHHHHHHHHHHH
Confidence 999998853 111 1 356789999999998876
No 5
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=98.66 E-value=8.8e-08 Score=109.21 Aligned_cols=149 Identities=15% Similarity=0.100 Sum_probs=86.2
Q ss_pred CCccccccCCccccccceeeeeec---------CCcc-----ccHHHHHHHHHHHHHHHhhccc-eee-eec--------
Q 015510 111 RALSVTDVTDTEWCEKKMEFNLLF---------GSKK-----VNKVMKVGRARHAELEKEVTEK-VKV-RVR-------- 166 (405)
Q Consensus 111 ~~LSVTdL~~~~WCElq~~Y~l~~---------g~~~-----~t~am~~Gt~iH~~LE~e~~~~-v~v-~i~-------- 166 (405)
..+|||.|....-.+..++...+. .+|. +..+..+||.+|.+||...... ... .+.
T Consensus 1012 ~k~SVSeikr~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~~~~~~aa~rGT~~H~vle~l~~~~~~~~~~l~~~~~~l~~ 1091 (1232)
T 3u4q_A 1012 TKQSVSEIKRKREYEDEYSGRAPVKPADGSILYRRPAFMMKKGLTAAEKGTAMHTVMQHIPLSHVPSIEEAEQTVHRLYE 1091 (1232)
T ss_dssp SEEEEC---------CCSEEC-----------CCCCTTTSCSSCCHHHHHHHHHHHHTTSCCSSCCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHhhcccccccccccccccccccccccCCcccccCCCChhhhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 359999999865444444322111 2222 3568999999999999984321 111 010
Q ss_pred ---cchhHH----HHHHHHHHHH-HHHHhH--cCcEEEEEEEEEE-------------CCEEEEEEEeEEeCCCCCCCCC
Q 015510 167 ---STEDIW----AVKLFNSITG-VNQLLF--EGLTRELPILGFI-------------KGVWMVGVIDEIQMPVKETARN 223 (405)
Q Consensus 167 ---t~ed~w----a~klln~i~~-l~~L~~--~G~~REl~V~G~i-------------~G~~v~GIIDeL~~~~~~~~~~ 223 (405)
..++.+ ..++..|+.. +...+. ....||.|+.-.+ ++++|+||||++...++ .
T Consensus 1092 ~~~l~~~~~~~i~~~~i~~f~~s~l~~~~~~a~~v~rE~pf~~~~~~~~~~~~~~~~~~~v~l~G~ID~~~~~~~----~ 1167 (1232)
T 3u4q_A 1092 KELLTEEQKDAIDIEEIVQFFHTEIGGQLIGAKWKDREIPFSLALPAKEIYPDAHEADEPLLVQGIIDCLYETED----G 1167 (1232)
T ss_dssp TTSSCHHHHHHCCHHHHHGGGGSHHHHHHHSCSEEEEEEEEEEEEEGGGTCSSCCSCCCEEEEEEEEEEEEECSS----C
T ss_pred cCCCCHHHHhhCCHHHHHHHHcCHHhHHHHhCCccEEECCeeecCchHhhcccccCCCCceEEEEEEEEEEEECC----E
Confidence 001111 2333333332 323332 2378999997766 35999999999987765 5
Q ss_pred cEEEeecccCCCCCC------C-hhhccchhhHHHHHHHHHHHhhcC
Q 015510 224 PILVDTKTRAQYTLP------A-ESQKRNGRLQLMCYKYMWDNLAAD 263 (405)
Q Consensus 224 l~I~D~KTR~~~~lP------~-~~~~~~~~lQLmlY~~ll~~L~~~ 263 (405)
++|+||||++.++-. . ......-.+||.||+.++..+..-
T Consensus 1168 i~lvDYKTd~~~~~~~~~~~~~~~~~~~~y~~QL~lYa~al~~~~~~ 1214 (1232)
T 3u4q_A 1168 LYLLAYKSDRIEGKFQHGFEGAAPILKKRYETQIQLYTKAVEQIAKT 1214 (1232)
T ss_dssp EEEEEEECCCCCC----CCTTTHHHHHHHSHHHHHHHHHHHHHHHSS
T ss_pred EEEEEeCCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999976420 0 123556689999999999998543
No 6
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=96.59 E-value=0.0045 Score=70.36 Aligned_cols=123 Identities=20% Similarity=0.121 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHhhccc-eeee-ec------cchhHHHHHHHHHHHHHH---------HHhH---cCcEEEEEEEEE
Q 015510 141 KVMKVGRARHAELEKEVTEK-VKVR-VR------STEDIWAVKLFNSITGVN---------QLLF---EGLTRELPILGF 200 (405)
Q Consensus 141 ~am~~Gt~iH~~LE~e~~~~-v~v~-i~------t~ed~wa~klln~i~~l~---------~L~~---~G~~REl~V~G~ 200 (405)
.....|+.+|..||..-... ...+ +. .-.+.|...+...|..+. .|-. ...-||++++--
T Consensus 947 ~ga~~Gt~lH~~le~~df~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~t~L~~~~~~l~~~~~~~~~~E~~F~~~ 1026 (1180)
T 1w36_B 947 RGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLP 1026 (1180)
T ss_dssp CSHHHHHHHHHHTTSCCSSSCCCHHHHHHHHHHTTCCGGGHHHHHHHHHHHHSSCSSSSSCCGGGCCGGGEEEEEEEEEE
T ss_pred CCCCcHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCCCCeeHHHCChhhceecccceee
Confidence 46799999999999654321 1100 00 001124433333332211 0111 337899999887
Q ss_pred EC------------------------------CEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCCh--------h-
Q 015510 201 IK------------------------------GVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAE--------S- 241 (405)
Q Consensus 201 i~------------------------------G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~--------~- 241 (405)
++ ..+|.|+||-+-..++ +++|+||||-.-..-+.. +
T Consensus 1027 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~g~l~G~IDlvf~~~~----~~~l~DYKtn~lg~~~~~Y~~~~~~~~~ 1102 (1180)
T 1w36_B 1027 ISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEG----RYYLLDYKSNWLGEDSSAYTQQAMAAAM 1102 (1180)
T ss_dssp ECSCCCHHHHHHHHHHHCSSTTSCCCCCSCCCEEEEEEEEEEEEBSSS----CBCCEEEECCCCCSSGGGSBHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhcccccccccccchhhceeeeeEEEEEEEECC----EEEEEEeCCCCCCCCccccCHHHHHHHH
Confidence 71 2799999999987643 899999999875432211 1
Q ss_pred hccchhhHHHHHHHHHHHhhcCCCCc
Q 015510 242 QKRNGRLQLMCYKYMWDNLAADNFPS 267 (405)
Q Consensus 242 ~~~~~~lQLmlY~~ll~~L~~~~~~~ 267 (405)
...--++|+.||...|.++....++-
T Consensus 1103 ~~~rY~lQ~~lY~~AL~r~l~~rv~~ 1128 (1180)
T 1w36_B 1103 QAHRYDLQYQLYTLALHRYLRHRIAD 1128 (1180)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHCCcHHHHHHHHHHHHHHHhccCCC
Confidence 23445799999999999887655443
No 7
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=96.14 E-value=0.013 Score=66.42 Aligned_cols=135 Identities=9% Similarity=0.030 Sum_probs=85.6
Q ss_pred CCccccccCCccccccceeeeeecCCccc---------c----HHHHHHHHHHHHHHHhhccce-ee---------eec-
Q 015510 111 RALSVTDVTDTEWCEKKMEFNLLFGSKKV---------N----KVMKVGRARHAELEKEVTEKV-KV---------RVR- 166 (405)
Q Consensus 111 ~~LSVTdL~~~~WCElq~~Y~l~~g~~~~---------t----~am~~Gt~iH~~LE~e~~~~v-~v---------~i~- 166 (405)
..+|+|+|.++.-|+++|+|+...|.... . .+..+|+..|+.||..+.... +. .+.
T Consensus 830 ~~lS~s~L~~f~r~P~~~f~~~~L~l~~~~~~~~~~d~epf~ld~l~r~~l~~~ll~~~~~~~~~~~~~~~l~~~g~lP~ 909 (1122)
T 1w36_C 830 ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPY 909 (1122)
T ss_dssp SCEEHHHHHHHSSSHHHHHHHTTTCCCCCCSCCCCCSSCCSSCCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCS
T ss_pred CCcCHHHHHHHHHCHHHHHHHHhcCCccCcccccCCcCCCCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHHHCCCCCC
Confidence 47999999999999999999998887531 1 489999999999998764221 00 000
Q ss_pred -cchhHHHHHHHHHHHHHHHHhHc--CcEEEEEEEEEECCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCChhhc
Q 015510 167 -STEDIWAVKLFNSITGVNQLLFE--GLTRELPILGFIKGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAESQK 243 (405)
Q Consensus 167 -t~ed~wa~klln~i~~l~~L~~~--G~~REl~V~G~i~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~~~~ 243 (405)
...+.|..++...+..+...... +......+.-.++|+.+.|.+|+|+ ++ -++||||++..
T Consensus 910 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~G~~d~i~--~~------g~~~~k~g~~~-------- 973 (1122)
T 1w36_C 910 GAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQ--PD------GLLRWRPSLLS-------- 973 (1122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEEEEEC--SS------EEEEECSSCCC--------
T ss_pred ChhhHHHHHHHHHHHHHHHHHHhcccCCCCCcceeeeeCCEEEEEEecccc--CC------eEEEEecCCCC--------
Confidence 11223333443333333222221 2333333433458999999999999 22 39999999751
Q ss_pred cchhhHHHHHHHHHHHhh
Q 015510 244 RNGRLQLMCYKYMWDNLA 261 (405)
Q Consensus 244 ~~~~lQLmlY~~ll~~L~ 261 (405)
....++.-++++++....
T Consensus 974 ~k~~~~~w~~~L~l~a~~ 991 (1122)
T 1w36_C 974 VAQGMQLWLEHLVYCASG 991 (1122)
T ss_dssp HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 124566777776666543
No 8
>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi}
Probab=55.64 E-value=15 Score=34.87 Aligned_cols=57 Identities=23% Similarity=0.292 Sum_probs=43.9
Q ss_pred HhHcC---cEEEEEEEEEECCEEEEEEEeEEeCCCCCCCCCcEEEeecccCCCCCCChhhccchhhHHHHHHHHHHHhh
Q 015510 186 LLFEG---LTRELPILGFIKGVWMVGVIDEIQMPVKETARNPILVDTKTRAQYTLPAESQKRNGRLQLMCYKYMWDNLA 261 (405)
Q Consensus 186 L~~~G---~~REl~V~G~i~G~~v~GIIDeL~~~~~~~~~~l~I~D~KTR~~~~lP~~~~~~~~~lQLmlY~~ll~~L~ 261 (405)
++..| +.||.++- .|.||-|-+..+ +.++|+++|.++.. ...-.|+..|...+++..
T Consensus 140 ~Lg~G~~~v~rEy~t~--------~G~IDlL~~D~~---g~~VvIElKr~~~~--------~e~V~QL~~Yl~~l~~~~ 199 (251)
T 2vld_A 140 VIEEGFKPIYREKPIR--------HGIVDVMGVDKD---GNIVVLELKRRKAD--------LHAVSQMKRYVDSLKEEY 199 (251)
T ss_dssp GTCTTCEEEEEEEEET--------TEEEEEEEECTT---SCEEEEEECSSCBC--------HHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcEEEEEEeccC--------CCceeEEEECCC---CCEEEEEEeeccCC--------HhHHHHHHHHHHHHHhcc
Confidence 34455 67887772 479999999755 59999999997643 478899999988887763
No 9
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=31.63 E-value=43 Score=21.60 Aligned_cols=18 Identities=39% Similarity=0.792 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 015510 169 EDIWAVKLFNSITGVNQL 186 (405)
Q Consensus 169 ed~wa~klln~i~~l~~L 186 (405)
|.-|+..+|||+.++..|
T Consensus 8 e~fW~khMwNfvSGIQYL 25 (30)
T 2jxf_A 8 EVFWAKHMWNFISGIQYL 25 (30)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567999999999998876
No 10
>3sm4_A Exonuclease; homologous recombination, DNA repair, recombineering, single annealing; 1.88A {Enterobacteria phage lambda} PDB: 3slp_A 1avq_A
Probab=29.14 E-value=2.4e+02 Score=25.66 Aligned_cols=31 Identities=26% Similarity=0.095 Sum_probs=26.0
Q ss_pred eeeeeeecCHHHHHHHHHhhhhhhccccccC
Q 015510 334 LGEEKFAFDYDLFNSQIEVCLEFWKGEREAS 364 (405)
Q Consensus 334 ~~~~~f~yd~~~L~~~l~~~~~fW~G~Re~~ 364 (405)
+....+..|++.++.-+....+||.--++..
T Consensus 187 ~~i~rI~RD~~~i~~l~~~~~~Fw~~v~~~~ 217 (229)
T 3sm4_A 187 LHYVVIERDEKYMASFDEIVPEFIEKMDEAL 217 (229)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677899999999999999999998655443
Done!