Query 015511
Match_columns 405
No_of_seqs 151 out of 1791
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 13:54:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ii7_A Kelch-like protein 7; p 99.9 2.1E-20 7.1E-25 171.0 25.9 262 93-383 12-283 (306)
2 1zgk_A Kelch-like ECH-associat 99.9 9.3E-20 3.2E-24 166.8 26.1 247 105-384 40-299 (308)
3 4asc_A Kelch repeat and BTB do 99.9 1.1E-19 3.6E-24 167.0 25.1 251 104-383 13-288 (315)
4 2woz_A Kelch repeat and BTB do 99.9 1.6E-19 5.4E-24 166.0 25.6 245 105-379 25-294 (318)
5 2xn4_A Kelch-like protein 2; s 99.9 2.6E-19 8.8E-24 163.3 26.1 248 105-383 31-288 (302)
6 2vpj_A Kelch-like protein 12; 99.9 1.9E-19 6.6E-24 164.0 25.0 246 105-383 32-289 (301)
7 1zgk_A Kelch-like ECH-associat 99.8 4.1E-17 1.4E-21 149.2 19.7 222 133-383 22-251 (308)
8 2uvk_A YJHT; unknown function, 99.8 7.5E-17 2.6E-21 150.6 21.6 271 93-385 20-355 (357)
9 3ii7_A Kelch-like protein 7; p 99.8 1.3E-16 4.3E-21 145.7 22.1 218 136-383 12-236 (306)
10 2vpj_A Kelch-like protein 12; 99.7 2.1E-16 7.1E-21 143.9 22.4 217 134-383 13-242 (301)
11 2xn4_A Kelch-like protein 2; s 99.7 2.7E-16 9.4E-21 143.2 22.1 218 135-383 15-240 (302)
12 2uvk_A YJHT; unknown function, 99.7 1.1E-16 3.8E-21 149.4 18.3 235 127-383 11-305 (357)
13 4asc_A Kelch repeat and BTB do 99.7 3.7E-16 1.3E-20 143.3 20.8 220 137-383 6-232 (315)
14 2woz_A Kelch repeat and BTB do 99.7 1.6E-15 5.4E-20 139.2 19.1 202 106-328 80-293 (318)
15 1k3i_A Galactose oxidase precu 99.6 6.2E-15 2.1E-19 148.7 15.4 252 106-383 168-508 (656)
16 2zwa_A Leucine carboxyl methyl 99.6 2.8E-13 9.7E-18 137.0 22.0 220 131-379 393-642 (695)
17 1k3i_A Galactose oxidase precu 99.5 3E-12 1E-16 129.0 20.3 215 105-333 220-508 (656)
18 2zwa_A Leucine carboxyl methyl 99.4 1.3E-11 4.3E-16 124.9 21.8 209 105-334 413-646 (695)
19 1fs1_A SKP2 F-BOX, cyclin A/CD 99.1 6.4E-11 2.2E-15 77.0 4.4 43 40-82 7-49 (53)
20 2ovr_B FBW7, F-BOX/WD repeat p 99.0 8.2E-07 2.8E-11 84.7 30.3 43 41-83 18-60 (445)
21 2e31_A FBS1, F-box only protei 99.0 3.2E-10 1.1E-14 100.3 4.4 47 42-88 51-98 (297)
22 3v7d_B Cell division control p 98.9 2.9E-06 1E-10 81.1 28.5 39 42-80 15-54 (464)
23 1p22_A F-BOX/WD-repeat protein 98.7 1.8E-06 6.2E-11 82.1 21.6 38 43-80 12-53 (435)
24 3l2o_B F-box only protein 4; s 98.0 2.1E-06 7.2E-11 75.0 2.5 48 40-87 3-50 (312)
25 2ast_B S-phase kinase-associat 97.6 3.5E-05 1.2E-09 70.4 3.6 42 40-81 7-48 (336)
26 2p1m_B Transport inhibitor res 96.9 0.00038 1.3E-08 68.8 3.4 36 40-75 4-40 (594)
27 3mbr_X Glutamine cyclotransfer 96.6 0.2 6.9E-06 42.8 17.4 183 177-400 25-214 (243)
28 3dsm_A Uncharacterized protein 96.6 0.4 1.4E-05 43.0 21.8 230 104-376 17-257 (328)
29 3dsm_A Uncharacterized protein 96.5 0.34 1.2E-05 43.4 19.3 232 104-378 64-308 (328)
30 3nol_A Glutamine cyclotransfer 96.2 0.32 1.1E-05 42.0 16.5 164 206-400 65-235 (262)
31 3ogk_B Coronatine-insensitive 96.1 0.0021 7.2E-08 63.4 2.6 34 43-76 14-48 (592)
32 3u4y_A Uncharacterized protein 96.0 0.8 2.7E-05 40.5 23.6 245 104-385 62-317 (331)
33 3nok_A Glutaminyl cyclase; bet 95.9 0.2 6.8E-06 43.4 13.7 163 207-400 76-245 (268)
34 1ri6_A Putative isomerase YBHE 95.9 0.87 3E-05 40.3 20.9 77 313-400 253-333 (343)
35 3hfq_A Uncharacterized protein 95.4 1.4 4.7E-05 39.4 18.5 241 106-382 20-282 (347)
36 1l0q_A Surface layer protein; 95.3 1.6 5.6E-05 39.5 19.9 221 100-376 8-237 (391)
37 3u4y_A Uncharacterized protein 95.3 1.1 3.7E-05 39.7 17.2 239 93-380 10-260 (331)
38 3q7m_A Lipoprotein YFGL, BAMB; 95.3 1.7 5.7E-05 39.5 25.0 214 104-376 63-300 (376)
39 3bws_A Protein LP49; two-domai 95.0 2.1 7.3E-05 39.4 20.1 204 134-377 132-339 (433)
40 1l0q_A Surface layer protein; 95.0 1.4 4.6E-05 40.1 17.2 188 137-378 3-195 (391)
41 2iwa_A Glutamine cyclotransfer 94.5 2.2 7.4E-05 37.0 16.9 186 176-400 24-216 (266)
42 3mbr_X Glutamine cyclotransfer 94.4 0.62 2.1E-05 39.8 12.1 111 236-376 27-137 (243)
43 4g56_B MGC81050 protein; prote 93.6 3.9 0.00013 36.8 17.8 211 133-399 103-321 (357)
44 3q7m_A Lipoprotein YFGL, BAMB; 93.5 4.2 0.00014 36.7 20.7 196 134-376 52-262 (376)
45 1p22_A F-BOX/WD-repeat protein 93.1 5.3 0.00018 36.9 18.9 136 207-377 277-419 (435)
46 3nol_A Glutamine cyclotransfer 92.9 1.1 3.9E-05 38.6 11.2 110 237-376 50-159 (262)
47 4aez_A CDC20, WD repeat-contai 92.7 5.7 0.0002 36.2 19.1 191 135-376 103-297 (401)
48 3hfq_A Uncharacterized protein 92.7 5 0.00017 35.5 17.6 75 293-380 249-327 (347)
49 1gxr_A ESG1, transducin-like e 92.6 4.9 0.00017 35.1 20.1 198 133-378 60-261 (337)
50 4gqb_B Methylosome protein 50; 92.0 6.6 0.00022 35.2 18.6 210 133-399 91-309 (344)
51 3nok_A Glutaminyl cyclase; bet 91.7 1.3 4.6E-05 38.2 10.2 108 237-377 62-169 (268)
52 3vgz_A Uncharacterized protein 91.4 7.1 0.00024 34.4 26.6 226 105-377 70-308 (353)
53 3g4e_A Regucalcin; six bladed 90.7 7.8 0.00027 33.6 21.7 199 135-377 24-234 (297)
54 2iwa_A Glutamine cyclotransfer 90.4 2.1 7.2E-05 37.1 10.3 108 240-376 32-139 (266)
55 1rwi_B Serine/threonine-protei 89.4 8.9 0.0003 32.3 21.8 190 130-374 72-266 (270)
56 4aow_A Guanine nucleotide-bind 88.1 13 0.00043 32.4 21.2 61 313-374 277-339 (340)
57 2aq5_A Coronin-1A; WD40 repeat 87.9 15 0.00052 33.2 22.6 223 135-400 93-324 (402)
58 4gga_A P55CDC, cell division c 87.8 16 0.00055 33.4 17.1 107 133-269 114-220 (420)
59 3jro_A Fusion protein of prote 87.6 25 0.00085 35.3 19.1 185 147-374 31-240 (753)
60 3vgz_A Uncharacterized protein 87.3 15 0.0005 32.3 19.7 190 146-377 68-267 (353)
61 2ovr_B FBW7, F-BOX/WD repeat p 87.0 19 0.00063 33.2 23.7 112 235-376 284-395 (445)
62 3fm0_A Protein CIAO1; WDR39,SG 86.8 16 0.00055 32.3 16.8 180 146-370 37-223 (345)
63 2hqs_A Protein TOLB; TOLB, PAL 86.8 19 0.00065 33.0 22.0 204 147-403 203-411 (415)
64 3scy_A Hypothetical bacterial 86.6 17 0.00057 32.3 22.5 68 313-382 233-303 (361)
65 3ei3_B DNA damage-binding prot 86.5 17 0.0006 32.4 17.1 178 147-374 96-284 (383)
66 1jmx_B Amine dehydrogenase; ox 84.8 19 0.00066 31.3 21.7 59 102-161 19-79 (349)
67 3jrp_A Fusion protein of prote 84.6 20 0.0007 31.5 19.2 71 295-380 221-296 (379)
68 1n7d_A LDL receptor, low-densi 83.9 34 0.0012 34.1 16.2 110 239-377 507-619 (699)
69 3v9f_A Two-component system se 83.7 39 0.0013 34.0 20.0 219 107-373 430-657 (781)
70 1ri6_A Putative isomerase YBHE 83.7 21 0.00072 30.9 19.4 111 258-381 151-273 (343)
71 1nir_A Nitrite reductase; hemo 83.7 18 0.00062 34.7 13.7 194 133-377 146-360 (543)
72 3no2_A Uncharacterized protein 83.7 20 0.0007 30.7 14.8 189 134-375 3-198 (276)
73 2z2n_A Virginiamycin B lyase; 83.7 19 0.00066 30.5 23.8 215 105-375 79-298 (299)
74 3jrp_A Fusion protein of prote 83.4 23 0.00079 31.2 21.5 66 294-374 171-242 (379)
75 1rwi_B Serine/threonine-protei 83.2 19 0.00066 30.1 18.0 194 131-378 30-228 (270)
76 1npe_A Nidogen, entactin; glyc 80.7 25 0.00084 29.7 16.4 71 176-269 39-112 (267)
77 1kv9_A Type II quinohemoprotei 80.3 12 0.00042 37.0 11.4 116 233-377 60-194 (668)
78 4e54_B DNA damage-binding prot 79.7 29 0.00098 31.8 13.3 99 147-269 142-242 (435)
79 2ad6_A Methanol dehydrogenase 79.7 16 0.00054 35.4 11.7 116 233-376 56-189 (571)
80 1gxr_A ESG1, transducin-like e 79.4 30 0.001 29.8 17.5 179 146-377 118-301 (337)
81 3m0c_C LDL receptor, low-densi 78.8 59 0.002 32.9 22.7 189 134-373 434-633 (791)
82 3dwl_C Actin-related protein 2 78.4 19 0.00065 32.0 11.3 60 146-220 32-92 (377)
83 1kb0_A Quinohemoprotein alcoho 78.0 12 0.00041 37.2 10.4 117 233-377 71-206 (677)
84 1qks_A Cytochrome CD1 nitrite 76.6 56 0.0019 31.5 15.7 195 135-377 166-378 (567)
85 1pjx_A Dfpase, DIISOPROPYLFLUO 76.5 35 0.0012 29.2 19.1 231 105-373 47-300 (314)
86 1got_B GT-beta; complex (GTP-b 76.3 40 0.0014 29.6 21.3 93 258-375 164-260 (340)
87 2vdu_B TRNA (guanine-N(7)-)-me 76.1 48 0.0016 30.4 20.8 124 258-399 220-364 (450)
88 3bws_A Protein LP49; two-domai 75.3 47 0.0016 30.0 22.5 199 135-372 223-432 (433)
89 2z2n_A Virginiamycin B lyase; 74.5 38 0.0013 28.5 22.7 218 105-378 37-260 (299)
90 1k8k_C P40, ARP2/3 complex 41 73.8 46 0.0016 29.1 20.2 69 294-381 213-285 (372)
91 2qc5_A Streptogramin B lactona 73.8 40 0.0014 28.4 23.5 218 105-378 42-265 (300)
92 3hrp_A Uncharacterized protein 73.4 55 0.0019 29.9 23.0 209 130-381 136-363 (409)
93 3sjl_D Methylamine dehydrogena 73.4 30 0.001 31.7 10.9 77 294-377 291-368 (386)
94 3dr2_A Exported gluconolactona 73.3 44 0.0015 28.8 18.5 200 138-379 59-274 (305)
95 3e5z_A Putative gluconolactona 73.3 42 0.0015 28.6 17.4 227 105-377 51-291 (296)
96 4ggc_A P55CDC, cell division c 72.9 43 0.0015 28.5 18.2 74 313-400 221-295 (318)
97 3v65_B Low-density lipoprotein 72.7 55 0.0019 29.6 18.5 187 135-374 87-279 (386)
98 1npe_A Nidogen, entactin; glyc 72.4 43 0.0015 28.1 21.5 192 134-376 46-242 (267)
99 4g56_B MGC81050 protein; prote 72.0 53 0.0018 29.1 16.9 190 133-373 148-344 (357)
100 1yiq_A Quinohemoprotein alcoho 72.0 36 0.0012 33.8 12.1 117 233-377 64-199 (689)
101 3e5z_A Putative gluconolactona 71.8 46 0.0016 28.3 19.0 190 146-379 49-253 (296)
102 4ery_A WD repeat-containing pr 71.7 47 0.0016 28.4 19.4 178 147-375 45-226 (312)
103 4e54_B DNA damage-binding prot 71.3 44 0.0015 30.5 12.1 93 258-374 187-284 (435)
104 2qc5_A Streptogramin B lactona 69.4 50 0.0017 27.8 19.4 194 130-378 25-223 (300)
105 1nir_A Nitrite reductase; hemo 69.3 81 0.0028 30.1 18.4 104 258-375 346-461 (543)
106 1jmx_B Amine dehydrogenase; ox 69.0 19 0.00066 31.3 8.7 72 292-377 8-79 (349)
107 3ow8_A WD repeat-containing pr 68.1 60 0.0021 28.2 18.5 175 146-375 101-282 (321)
108 3i2n_A WD repeat-containing pr 67.5 61 0.0021 28.0 18.9 25 349-373 330-354 (357)
109 4aez_A CDC20, WD repeat-contai 67.4 70 0.0024 28.7 23.7 224 105-380 114-344 (401)
110 2aq5_A Coronin-1A; WD40 repeat 67.4 69 0.0024 28.6 21.3 203 132-374 42-256 (402)
111 3mkq_A Coatomer beta'-subunit; 66.9 1.1E+02 0.0036 30.5 24.9 181 146-377 76-264 (814)
112 3m0c_C LDL receptor, low-densi 66.6 1.1E+02 0.0039 30.8 20.1 112 239-378 482-595 (791)
113 4gqb_B Methylosome protein 50; 66.6 69 0.0023 28.3 17.5 190 133-374 136-333 (344)
114 3tc9_A Hypothetical hydrolase; 65.9 62 0.0021 29.8 11.8 113 239-378 149-263 (430)
115 1k8k_C P40, ARP2/3 complex 41 65.6 69 0.0024 27.9 18.1 26 349-375 211-236 (372)
116 3q6k_A 43.2 kDa salivary prote 65.0 55 0.0019 29.8 10.7 68 312-380 122-199 (381)
117 2dg1_A DRP35, lactonase; beta 64.5 70 0.0024 27.6 17.6 210 133-378 53-269 (333)
118 4ery_A WD repeat-containing pr 63.8 69 0.0024 27.3 21.6 182 146-375 86-271 (312)
119 4a11_B DNA excision repair pro 63.4 79 0.0027 27.9 14.4 26 349-375 254-279 (408)
120 1q7f_A NHL, brain tumor CG1071 62.6 69 0.0024 26.9 19.4 151 130-322 126-280 (286)
121 3v9f_A Two-component system se 62.5 1.3E+02 0.0044 30.0 20.2 186 147-379 427-618 (781)
122 1kb0_A Quinohemoprotein alcoho 62.1 1.3E+02 0.0043 29.7 19.8 117 134-269 76-201 (677)
123 1r5m_A SIR4-interacting protei 61.7 87 0.003 27.8 20.3 144 133-322 215-361 (425)
124 4h5i_A Guanine nucleotide-exch 61.6 87 0.003 27.8 16.6 197 132-373 141-344 (365)
125 1ijq_A LDL receptor, low-densi 60.9 84 0.0029 27.3 24.5 190 134-374 40-240 (316)
126 3v65_B Low-density lipoprotein 59.7 1E+02 0.0034 27.8 23.7 189 133-373 125-319 (386)
127 3scy_A Hypothetical bacterial 59.6 90 0.0031 27.3 24.4 108 258-379 233-346 (361)
128 2hqs_A Protein TOLB; TOLB, PAL 59.6 1E+02 0.0035 27.9 17.6 188 147-380 159-352 (415)
129 1w6s_A Methanol dehydrogenase 59.4 68 0.0023 31.2 11.1 115 233-377 56-198 (599)
130 3g4e_A Regucalcin; six bladed 59.3 84 0.0029 26.8 20.4 219 102-360 33-261 (297)
131 3k26_A Polycomb protein EED; W 58.4 91 0.0031 26.9 17.7 22 352-374 299-320 (366)
132 3vl1_A 26S proteasome regulato 58.0 1E+02 0.0035 27.4 20.7 67 133-217 106-172 (420)
133 3p5b_L Low density lipoprotein 57.7 1.1E+02 0.0038 27.7 21.0 190 134-373 122-321 (400)
134 1pjx_A Dfpase, DIISOPROPYLFLUO 57.5 88 0.003 26.5 18.2 193 146-374 45-258 (314)
135 1flg_A Protein (quinoprotein e 57.4 84 0.0029 30.4 11.3 119 233-377 62-198 (582)
136 3fm0_A Protein CIAO1; WDR39,SG 57.3 50 0.0017 29.0 9.2 87 294-399 27-115 (345)
137 2oiz_A Aromatic amine dehydrog 57.1 42 0.0014 30.0 8.7 72 314-400 287-358 (361)
138 1q7f_A NHL, brain tumor CG1071 56.0 90 0.0031 26.1 20.3 201 133-379 38-245 (286)
139 4a2l_A BT_4663, two-component 55.9 1.7E+02 0.0058 29.3 20.1 203 130-380 93-299 (795)
140 1ijq_A LDL receptor, low-densi 54.9 1.1E+02 0.0036 26.7 21.0 183 147-378 10-201 (316)
141 3lrv_A PRE-mRNA-splicing facto 54.7 1.1E+02 0.0037 26.6 19.1 201 129-377 88-299 (343)
142 3fvz_A Peptidyl-glycine alpha- 54.6 1.1E+02 0.0037 26.6 20.0 213 130-373 96-323 (329)
143 1ddw_A GLGF-domain protein hom 52.8 36 0.0012 25.2 6.0 40 147-193 11-51 (120)
144 3mkq_A Coatomer beta'-subunit; 52.6 1.8E+02 0.0063 28.7 19.2 138 146-324 118-261 (814)
145 2fp8_A Strictosidine synthase; 52.4 1.1E+02 0.0039 26.3 19.2 210 135-373 91-314 (322)
146 3v64_C Agrin; beta propeller, 51.9 1.3E+02 0.0043 26.7 20.0 190 135-377 44-239 (349)
147 1sq9_A Antiviral protein SKI8; 51.8 1.3E+02 0.0043 26.5 19.3 21 353-374 377-397 (397)
148 4a2l_A BT_4663, two-component 51.7 2E+02 0.0067 28.8 22.7 199 134-379 415-621 (795)
149 1vyh_C Platelet-activating fac 50.4 1.4E+02 0.0049 26.8 18.4 16 146-161 129-144 (410)
150 3sfz_A APAF-1, apoptotic pepti 50.3 2.5E+02 0.0086 29.6 21.5 197 133-377 624-833 (1249)
151 1evh_A WH1 domain, protein (ME 49.8 43 0.0015 24.4 6.0 42 147-193 11-52 (112)
152 2hes_X YDR267CP; beta-propelle 48.6 1.3E+02 0.0045 25.9 17.4 78 313-399 221-305 (330)
153 2vdu_B TRNA (guanine-N(7)-)-me 48.5 1.6E+02 0.0054 26.8 20.6 64 295-376 210-275 (450)
154 3v7d_B Cell division control p 48.3 1.6E+02 0.0054 26.7 21.5 145 134-325 279-424 (464)
155 1r5m_A SIR4-interacting protei 48.3 1.4E+02 0.0049 26.2 20.3 95 258-377 227-324 (425)
156 4a11_B DNA excision repair pro 47.8 1.4E+02 0.0049 26.1 21.6 52 313-374 314-367 (408)
157 2hz6_A Endoplasmic reticulum t 46.9 8.4 0.00029 34.9 2.1 27 234-269 4-30 (369)
158 2qe8_A Uncharacterized protein 46.9 96 0.0033 27.2 9.3 81 294-378 77-161 (343)
159 2pm9_A Protein WEB1, protein t 46.7 1.5E+02 0.0052 26.1 16.0 68 295-373 178-250 (416)
160 1qks_A Cytochrome CD1 nitrite 46.6 42 0.0014 32.5 7.1 110 239-377 166-280 (567)
161 2pm7_B Protein transport prote 46.1 52 0.0018 28.1 7.2 71 293-379 19-93 (297)
162 2ad6_A Methanol dehydrogenase 45.6 1.9E+02 0.0063 27.8 11.6 60 207-269 126-187 (571)
163 3bg1_A Protein SEC13 homolog; 44.9 56 0.0019 28.2 7.3 70 294-379 24-97 (316)
164 1egx_A VAsp, vasodilator-stimu 43.8 40 0.0014 24.7 5.0 43 147-193 11-53 (115)
165 2pm9_A Protein WEB1, protein t 43.4 1.7E+02 0.0059 25.7 19.4 66 294-374 274-339 (416)
166 2xyi_A Probable histone-bindin 43.3 1.9E+02 0.0064 26.1 14.9 28 349-376 387-414 (430)
167 3k26_A Polycomb protein EED; W 42.8 1.6E+02 0.0055 25.2 19.9 64 295-372 299-366 (366)
168 3v64_C Agrin; beta propeller, 42.7 1.8E+02 0.006 25.7 25.6 189 133-373 82-276 (349)
169 3jro_A Fusion protein of prote 42.5 1.1E+02 0.0038 30.4 9.9 76 313-400 31-110 (753)
170 3sov_A LRP-6, low-density lipo 42.5 1.7E+02 0.0058 25.4 21.5 186 135-374 46-240 (318)
171 2hes_X YDR267CP; beta-propelle 40.3 1.8E+02 0.0061 25.0 19.9 65 294-373 164-231 (330)
172 3ei3_B DNA damage-binding prot 40.0 1.9E+02 0.0065 25.3 13.6 132 207-372 97-236 (383)
173 2xyi_A Probable histone-bindin 40.0 2.1E+02 0.0072 25.8 13.5 24 349-372 330-353 (430)
174 3p5b_L Low density lipoprotein 39.6 2.1E+02 0.0073 25.8 19.3 193 136-378 84-283 (400)
175 2ojh_A Uncharacterized protein 39.4 1.6E+02 0.0054 24.2 17.8 186 146-380 21-214 (297)
176 1i2h_A PSD-ZIP45(homer-1C/VESL 39.4 66 0.0023 25.3 5.9 40 147-193 16-56 (168)
177 3zwl_B Eukaryotic translation 39.2 1.8E+02 0.0063 24.9 20.6 17 146-162 95-111 (369)
178 3sfz_A APAF-1, apoptotic pepti 39.0 3.7E+02 0.013 28.3 24.2 199 133-375 666-874 (1249)
179 3fvz_A Peptidyl-glycine alpha- 38.6 1.9E+02 0.0065 24.9 22.1 194 147-378 69-283 (329)
180 2p4o_A Hypothetical protein; p 38.3 1.9E+02 0.0064 24.7 9.8 107 239-373 42-148 (306)
181 3bg1_A Protein SEC13 homolog; 38.1 1.9E+02 0.0065 24.7 16.1 53 313-372 189-247 (316)
182 3dm0_A Maltose-binding peripla 37.6 3E+02 0.01 26.8 21.9 100 146-269 493-594 (694)
183 1erj_A Transcriptional repress 37.3 2.2E+02 0.0075 25.2 19.0 99 258-374 187-289 (393)
184 3iuj_A Prolyl endopeptidase; h 37.2 3.1E+02 0.01 26.8 23.4 145 206-381 259-414 (693)
185 3i2n_A WD repeat-containing pr 35.2 2.1E+02 0.0072 24.4 20.0 93 258-373 190-292 (357)
186 1pgu_A Actin interacting prote 35.0 2.9E+02 0.0099 25.9 18.1 62 294-373 552-615 (615)
187 2kwv_A RAD30 homolog B, DNA po 34.8 19 0.00065 21.3 1.5 16 43-58 22-37 (48)
188 3azo_A Aminopeptidase; POP fam 34.3 3.2E+02 0.011 26.2 21.8 192 147-379 161-376 (662)
189 4a0p_A LRP6, LRP-6, low-densit 33.9 3.4E+02 0.012 26.4 21.9 96 147-269 15-113 (628)
190 3c5m_A Oligogalacturonate lyas 33.7 2.4E+02 0.0082 24.6 15.4 207 146-378 167-390 (396)
191 1erj_A Transcriptional repress 32.9 2.6E+02 0.0089 24.7 19.3 198 133-375 132-344 (393)
192 1vyh_C Platelet-activating fac 32.7 2.7E+02 0.0092 24.9 21.3 62 295-374 308-371 (410)
193 1pby_B Quinohemoprotein amine 32.5 2.3E+02 0.0077 23.9 11.3 105 258-377 11-129 (337)
194 3dwl_C Actin-related protein 2 32.3 52 0.0018 29.0 5.1 65 294-374 22-88 (377)
195 3odt_A Protein DOA1; ubiquitin 32.3 2.2E+02 0.0074 23.7 20.9 26 134-161 28-53 (313)
196 3sjl_D Methylamine dehydrogena 32.2 2.9E+02 0.0098 25.0 11.1 123 239-376 44-173 (386)
197 3iz6_a 40S ribosomal protein R 31.2 2.7E+02 0.0093 24.4 21.7 186 146-373 179-376 (380)
198 2pm7_B Protein transport prote 31.1 2.4E+02 0.0081 23.7 21.2 54 313-373 180-239 (297)
199 2oiz_A Aromatic amine dehydrog 31.0 2.2E+02 0.0074 25.1 9.0 108 258-376 31-144 (361)
200 4gga_A P55CDC, cell division c 30.7 2.9E+02 0.0099 24.6 20.6 52 313-374 301-355 (420)
201 1pby_B Quinohemoprotein amine 30.7 1.8E+02 0.0063 24.5 8.4 60 313-377 11-70 (337)
202 1yfq_A Cell cycle arrest prote 30.4 2.5E+02 0.0085 23.8 19.6 26 349-375 260-285 (342)
203 3zwl_B Eukaryotic translation 30.2 2.6E+02 0.0088 23.8 18.9 66 294-377 186-254 (369)
204 3iz6_a 40S ribosomal protein R 29.3 2.9E+02 0.01 24.2 21.8 94 294-399 260-354 (380)
205 1kv9_A Type II quinohemoprotei 29.0 4.1E+02 0.014 25.9 11.9 62 207-271 128-193 (668)
206 2ojh_A Uncharacterized protein 28.9 2.4E+02 0.0081 23.0 19.0 199 133-379 50-265 (297)
207 3hrp_A Uncharacterized protein 28.5 3.3E+02 0.011 24.5 22.1 230 105-371 153-409 (409)
208 3odt_A Protein DOA1; ubiquitin 27.1 2.7E+02 0.0092 23.1 19.6 55 313-378 246-302 (313)
209 3vl1_A 26S proteasome regulato 26.2 3.3E+02 0.011 23.9 24.0 102 258-372 313-419 (420)
210 3dm0_A Maltose-binding peripla 26.1 4.5E+02 0.016 25.4 15.7 92 258-376 541-636 (694)
211 3mmy_A MRNA export factor; mRN 25.9 3.1E+02 0.01 23.3 14.0 152 175-374 42-201 (368)
212 2bkl_A Prolyl endopeptidase; m 25.6 4.7E+02 0.016 25.4 26.0 193 147-380 202-405 (695)
213 3ow8_A WD repeat-containing pr 25.4 3.2E+02 0.011 23.3 22.6 184 132-370 130-319 (321)
214 3o4h_A Acylamino-acid-releasin 25.2 4.3E+02 0.015 24.8 15.2 187 135-378 122-320 (582)
215 2fp8_A Strictosidine synthase; 24.8 3.2E+02 0.011 23.2 14.8 155 130-321 131-312 (322)
216 4ggc_A P55CDC, cell division c 24.7 3E+02 0.01 22.8 13.5 53 207-269 46-100 (318)
217 2xdw_A Prolyl endopeptidase; a 24.4 5E+02 0.017 25.3 25.2 194 147-380 208-424 (710)
218 4hw6_A Hypothetical protein, I 23.9 4.2E+02 0.014 24.2 10.0 114 234-375 142-262 (433)
219 3c75_H MADH, methylamine dehyd 23.4 4.3E+02 0.015 24.2 11.5 114 239-377 84-214 (426)
220 1got_B GT-beta; complex (GTP-b 23.3 3.5E+02 0.012 23.1 20.1 65 294-374 237-303 (340)
221 1sq9_A Antiviral protein SKI8; 22.8 3.8E+02 0.013 23.2 22.6 107 258-375 207-325 (397)
222 4aow_A Guanine nucleotide-bind 22.5 3.5E+02 0.012 22.7 13.9 14 146-159 60-73 (340)
223 2be1_A Serine/threonine-protei 22.4 2.9E+02 0.0098 24.5 7.9 26 351-377 110-135 (339)
224 3vu4_A KMHSV2; beta-propeller 21.4 3.6E+02 0.012 23.4 8.6 64 293-374 29-92 (355)
225 3ott_A Two-component system se 20.3 6.2E+02 0.021 24.8 14.8 180 106-328 84-266 (758)
No 1
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.88 E-value=2.1e-20 Score=170.95 Aligned_cols=262 Identities=16% Similarity=0.234 Sum_probs=185.0
Q ss_pred CEEEEEecCC-CCeeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCC---CceEEEEeCcccceeeccCCCCC
Q 015511 93 PWYFMFTSSD-EPIGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDS---RSELYVCNPISKSWKKLEEPPGL 168 (405)
Q Consensus 93 p~l~~~~~~~-~~~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~---~~~~~v~NP~T~~~~~lP~~~~~ 168 (405)
..++++.... ......||+.+++|..++....++..+.++..+|.|++.++.. ...++++||.|++|..++++|..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4555554433 3467899999999998875445555566667788888887632 36799999999999999988765
Q ss_pred CCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEe
Q 015511 169 KFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYA 248 (405)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~ 248 (405)
+.. +. +...+. +|+++|+..... .....+++||..+++|+... + ++..+..+.++.++|+||++++.
T Consensus 92 r~~-~~--~~~~~~-----~iyv~GG~~~~~---~~~~~~~~~d~~~~~W~~~~-~-~p~~r~~~~~~~~~~~iyv~GG~ 158 (306)
T 3ii7_A 92 RDS-LA--ACAAEG-----KIYTSGGSEVGN---SALYLFECYDTRTESWHTKP-S-MLTQRCSHGMVEANGLIYVCGGS 158 (306)
T ss_dssp CBS-CE--EEEETT-----EEEEECCBBTTB---SCCCCEEEEETTTTEEEEEC-C-CSSCCBSCEEEEETTEEEEECCE
T ss_pred ccc-ee--EEEECC-----EEEEECCCCCCC---cEeeeEEEEeCCCCceEeCC-C-CcCCcceeEEEEECCEEEEECCC
Confidence 522 22 222322 788888753111 12357999999999999874 3 33345666778899999999975
Q ss_pred cCCCC-CCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEE
Q 015511 249 TGGGA-PENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQE 327 (405)
Q Consensus 249 ~~~~~-~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~ 327 (405)
.+... ......+.+||+.+++|+.+ .++|..+....++..+|+||++++.... .....+.+|+++.++|+.
T Consensus 159 ~~~~~~~~~~~~~~~yd~~~~~W~~~-----~~~p~~r~~~~~~~~~~~i~v~GG~~~~---~~~~~~~~yd~~~~~W~~ 230 (306)
T 3ii7_A 159 LGNNVSGRVLNSCEVYDPATETWTEL-----CPMIEARKNHGLVFVKDKIFAVGGQNGL---GGLDNVEYYDIKLNEWKM 230 (306)
T ss_dssp ESCTTTCEECCCEEEEETTTTEEEEE-----CCCSSCCBSCEEEEETTEEEEECCEETT---EEBCCEEEEETTTTEEEE
T ss_pred CCCCCcccccceEEEeCCCCCeEEEC-----CCccchhhcceEEEECCEEEEEeCCCCC---CCCceEEEeeCCCCcEEE
Confidence 42110 01146799999999999853 4566666667788899999999986432 124568888888899999
Q ss_pred EeccChhHHhccCCCCceeEEeeCCCEEEEEeC-----CCCeEEEEECCCCcEEEccCCCC
Q 015511 328 VARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY-----GAPSLLVYDMNLKQWRWSHKCPV 383 (405)
Q Consensus 328 v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~Yd~~~~~w~~l~~~p~ 383 (405)
+..+|.... ..++...++.||+... ....+.+||+++++|+.++.+|.
T Consensus 231 ~~~~p~~r~--------~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 283 (306)
T 3ii7_A 231 VSPMPWKGV--------TVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRA 283 (306)
T ss_dssp CCCCSCCBS--------CCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEEC
T ss_pred CCCCCCCcc--------ceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCccc
Confidence 988875322 1233334778888753 23689999999999999987764
No 2
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.86 E-value=9.3e-20 Score=166.80 Aligned_cols=247 Identities=15% Similarity=0.181 Sum_probs=177.2
Q ss_pred eeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCC----C----CceEEEEeCcccceeeccCCCCCCCCcccee
Q 015511 105 IGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDND----S----RSELYVCNPISKSWKKLEEPPGLKFSDYSAL 176 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~----~----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~ 176 (405)
....||+..++|..++....++..+.++..+|.|++.++. . ...++++||.|++|..++++|..+.. +.
T Consensus 40 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~-- 116 (308)
T 1zgk_A 40 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR-IG-- 116 (308)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT-CE--
T ss_pred eEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccc-cE--
Confidence 5678999999999986444444455566678888888763 1 25689999999999999988765522 22
Q ss_pred EEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCC
Q 015511 177 SLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPEN 256 (405)
Q Consensus 177 ~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~ 256 (405)
+...+. +|+++|+.... .....+++||..+++|+... + ++..+..+.++.++++||++++..+ ...
T Consensus 117 ~~~~~~-----~iyv~GG~~~~----~~~~~~~~yd~~~~~W~~~~-~-~p~~r~~~~~~~~~~~iyv~GG~~~---~~~ 182 (308)
T 1zgk_A 117 VGVIDG-----HIYAVGGSHGC----IHHNSVERYEPERDEWHLVA-P-MLTRRIGVGVAVLNRLLYAVGGFDG---TNR 182 (308)
T ss_dssp EEEETT-----EEEEECCEETT----EECCCEEEEETTTTEEEECC-C-CSSCCBSCEEEEETTEEEEECCBCS---SCB
T ss_pred EEEECC-----EEEEEcCCCCC----cccccEEEECCCCCeEeECC-C-CCccccceEEEEECCEEEEEeCCCC---CCc
Confidence 222222 78888875321 11357899999999999875 3 3334556677888999999986542 222
Q ss_pred ccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHH
Q 015511 257 RHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFF 336 (405)
Q Consensus 257 ~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~ 336 (405)
...+..||+.+++|+.+ .++|..+....++..+|+||++++.... .....+.+|+++.++|+++..+|....
T Consensus 183 ~~~~~~yd~~~~~W~~~-----~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~p~~r~ 254 (308)
T 1zgk_A 183 LNSAECYYPERNEWRMI-----TAMNTIRSGAGVCVLHNCIYAAGGYDGQ---DQLNSVERYDVETETWTFVAPMKHRRS 254 (308)
T ss_dssp CCCEEEEETTTTEEEEC-----CCCSSCCBSCEEEEETTEEEEECCBCSS---SBCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred CceEEEEeCCCCeEeeC-----CCCCCccccceEEEECCEEEEEeCCCCC---CccceEEEEeCCCCcEEECCCCCCCcc
Confidence 46799999999999853 4556656666788889999999986432 124668888888899999988875322
Q ss_pred hccCCCCceeEEeeCCCEEEEEeC-----CCCeEEEEECCCCcEEEccCCCCC
Q 015511 337 QGFGEFDDVFASSGTDDLIYIQSY-----GAPSLLVYDMNLKQWRWSHKCPVT 384 (405)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~Yd~~~~~w~~l~~~p~~ 384 (405)
..++...++.||+... ....+.+||+++++|+.++.+|..
T Consensus 255 --------~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 299 (308)
T 1zgk_A 255 --------ALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSG 299 (308)
T ss_dssp --------SCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC
T ss_pred --------ceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCCCC
Confidence 1223334678888653 246899999999999999888753
No 3
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.86 E-value=1.1e-19 Score=166.99 Aligned_cols=251 Identities=11% Similarity=0.161 Sum_probs=175.1
Q ss_pred CeeEEecCCCCeeeeccCCC-CCCCCeEEEecCceEEEEeCC-----C-----CceEEEEeCcccceeeccCCCCCCCCc
Q 015511 104 PIGYAYDPILRKWYGIELPC-IETSNWFIASSYGLVCFMDND-----S-----RSELYVCNPISKSWKKLEEPPGLKFSD 172 (405)
Q Consensus 104 ~~~~~~d~~~~~w~~~~~p~-~~~~~~~~~s~~Gll~~~~~~-----~-----~~~~~v~NP~T~~~~~lP~~~~~~~~~ 172 (405)
.....||+..++|...++|. .++..+.++..+|.|++.++. . ...++++||.|++|..++++|.++..
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~- 91 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL- 91 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-
Confidence 35789999999998765653 344555666778888887652 1 13489999999999999988855422
Q ss_pred cceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCC
Q 015511 173 YSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGG 252 (405)
Q Consensus 173 ~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~ 252 (405)
+. +...+. +|+++|+...... ......+++||..+++|+... + ++..+..+.++.++++||++++.. .
T Consensus 92 ~~--~~~~~~-----~lyv~GG~~~~~~-~~~~~~~~~~d~~~~~W~~~~-~-~p~~r~~~~~~~~~~~iyv~GG~~--~ 159 (315)
T 4asc_A 92 FG--LGEALN-----SIYVVGGREIKDG-ERCLDSVMCYDRLSFKWGESD-P-LPYVVYGHTVLSHMDLVYVIGGKG--S 159 (315)
T ss_dssp CE--EEEETT-----EEEEECCEESSTT-CCBCCCEEEEETTTTEEEECC-C-CSSCCBSCEEEEETTEEEEECCBC--T
T ss_pred ee--EEEECC-----EEEEEeCCcCCCC-CcccceEEEECCCCCcEeECC-C-CCCcccceeEEEECCEEEEEeCCC--C
Confidence 22 222222 7888887542111 112457999999999999875 3 334456677888999999999652 1
Q ss_pred CCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccC
Q 015511 253 APENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMP 332 (405)
Q Consensus 253 ~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~ 332 (405)
.......+..||+.+++|+. ..++|..+....++..+|+||++++.... .....+.+|+++.++|+.+..+|
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~-----~~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~yd~~~~~W~~~~~~p 231 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKE-----LAPMQTARSLFGATVHDGRIIVAAGVTDT---GLTSSAEVYSITDNKWAPFEAFP 231 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEE-----CCCCSSCCBSCEEEEETTEEEEEEEECSS---SEEEEEEEEETTTTEEEEECCCS
T ss_pred CCcccceEEEEeCCCCeEEE-----CCCCCCchhceEEEEECCEEEEEeccCCC---CccceEEEEECCCCeEEECCCCC
Confidence 22334689999999999985 34567666667788899999999986432 12456777777789999998887
Q ss_pred hhHHhccCCCCceeEEeeCCCEEEEEeCC--------------CCeEEEEECCCCcEEEccCCCC
Q 015511 333 HKFFQGFGEFDDVFASSGTDDLIYIQSYG--------------APSLLVYDMNLKQWRWSHKCPV 383 (405)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------~~~~~~Yd~~~~~w~~l~~~p~ 383 (405)
..... .++...++.||+.... ...+.+||+++++|+.+.+.|.
T Consensus 232 ~~r~~--------~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~r 288 (315)
T 4asc_A 232 QERSS--------LSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREIA 288 (315)
T ss_dssp SCCBS--------CEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEESCSS
T ss_pred Ccccc--------eeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhccCCc
Confidence 54221 1233346677775421 1468899999999999966654
No 4
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.86 E-value=1.6e-19 Score=166.04 Aligned_cols=245 Identities=18% Similarity=0.254 Sum_probs=172.0
Q ss_pred eeEEecCCCCeeeeccCCC-CCCCCeEEEecCceEEEEeCCC----------CceEEEEeCcccceeeccCCCCCCCCcc
Q 015511 105 IGYAYDPILRKWYGIELPC-IETSNWFIASSYGLVCFMDNDS----------RSELYVCNPISKSWKKLEEPPGLKFSDY 173 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~p~-~~~~~~~~~s~~Gll~~~~~~~----------~~~~~v~NP~T~~~~~lP~~~~~~~~~~ 173 (405)
....||+..++|...++|. .++..+.++..+|.|++.++.. ...++++||.|++|..++++|..+. .+
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARC-LF 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBC-SC
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccc-cc
Confidence 4789999999999866554 4455556677788888887621 1238999999999999998886552 22
Q ss_pred ceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCC
Q 015511 174 SALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGA 253 (405)
Q Consensus 174 ~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~ 253 (405)
. +...+. +|+++|+...... .....+++||..+++|+... ++ +..+..+.++.++|+||++++... .
T Consensus 104 ~--~~~~~~-----~iyv~GG~~~~~~--~~~~~~~~yd~~~~~W~~~~-~~-p~~r~~~~~~~~~~~iyv~GG~~~--~ 170 (318)
T 2woz_A 104 G--LGEVDD-----KIYVVAGKDLQTE--ASLDSVLCYDPVAAKWSEVK-NL-PIKVYGHNVISHNGMIYCLGGKTD--D 170 (318)
T ss_dssp E--EEEETT-----EEEEEEEEBTTTC--CEEEEEEEEETTTTEEEEEC-CC-SSCEESCEEEEETTEEEEECCEES--S
T ss_pred c--eEEECC-----EEEEEcCccCCCC--cccceEEEEeCCCCCEeECC-CC-CCcccccEEEEECCEEEEEcCCCC--C
Confidence 2 222222 7888887542111 12457999999999999874 32 334556677889999999986531 1
Q ss_pred CCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccCh
Q 015511 254 PENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPH 333 (405)
Q Consensus 254 ~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~ 333 (405)
......+..||+.+++|+.+ .++|..+....++..+|+||++++.... .....+++|+++.++|+++..+|.
T Consensus 171 ~~~~~~~~~yd~~~~~W~~~-----~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~yd~~~~~W~~~~~~p~ 242 (318)
T 2woz_A 171 KKCTNRVFIYNPKKGDWKDL-----APMKTPRSMFGVAIHKGKIVIAGGVTED---GLSASVEAFDLKTNKWEVMTEFPQ 242 (318)
T ss_dssp SCBCCCEEEEETTTTEEEEE-----CCCSSCCBSCEEEEETTEEEEEEEEETT---EEEEEEEEEETTTCCEEECCCCSS
T ss_pred CCccceEEEEcCCCCEEEEC-----CCCCCCcccceEEEECCEEEEEcCcCCC---CccceEEEEECCCCeEEECCCCCC
Confidence 22345799999999999853 4566666666788899999999986432 124567777777899999988875
Q ss_pred hHHhccCCCCceeEEeeCCCEEEEEeC--------------CCCeEEEEECCCCcEEEcc
Q 015511 334 KFFQGFGEFDDVFASSGTDDLIYIQSY--------------GAPSLLVYDMNLKQWRWSH 379 (405)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--------------~~~~~~~Yd~~~~~w~~l~ 379 (405)
.... .++...++.||+... ....+.+||+++++|+.+.
T Consensus 243 ~r~~--------~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 294 (318)
T 2woz_A 243 ERSS--------ISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGML 294 (318)
T ss_dssp CCBS--------CEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEEE
T ss_pred cccc--------eEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhhc
Confidence 3221 123334667777642 1357999999999999993
No 5
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.85 E-value=2.6e-19 Score=163.35 Aligned_cols=248 Identities=13% Similarity=0.139 Sum_probs=175.1
Q ss_pred eeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCC----CceEEEEeCcccceeeccCCCCCCCCccceeEEEE
Q 015511 105 IGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDS----RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSV 180 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~ 180 (405)
....||+..++|..++....++..+.+...+|.|++.++.. ...++++||.|++|..++++|..+.. +. +...
T Consensus 31 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~--~~~~ 107 (302)
T 2xn4_A 31 SVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-LG--AAVL 107 (302)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CE--EEEE
T ss_pred cEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-eE--EEEE
Confidence 46789999999998864334444455666788888887632 25799999999999999988765522 22 2222
Q ss_pred eCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEE
Q 015511 181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGL 260 (405)
Q Consensus 181 ~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i 260 (405)
+. +|+++|+.... .....+++||..+++|+... + ++..+..+.++.++|+||++++..+. .......+
T Consensus 108 ~~-----~iyv~GG~~~~----~~~~~~~~~d~~~~~W~~~~-~-~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~ 175 (302)
T 2xn4_A 108 NG-----LLYAVGGFDGS----TGLSSVEAYNIKSNEWFHVA-P-MNTRRSSVGVGVVGGLLYAVGGYDVA-SRQCLSTV 175 (302)
T ss_dssp TT-----EEEEEEEECSS----CEEEEEEEEETTTTEEEEEC-C-CSSCCBSCEEEEETTEEEEECCEETT-TTEECCCE
T ss_pred CC-----EEEEEcCCCCC----ccCceEEEEeCCCCeEeecC-C-CCCcccCceEEEECCEEEEEeCCCCC-CCccccEE
Confidence 22 78888875321 11357999999999999874 3 33345566778899999999865421 01123579
Q ss_pred EEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccC
Q 015511 261 ISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFG 340 (405)
Q Consensus 261 ~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~ 340 (405)
..||+.+++|+.+ .++|..+....++..+|+||++++.... .....+.+|+++.++|+.+..+|....
T Consensus 176 ~~yd~~~~~W~~~-----~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~yd~~~~~W~~~~~~~~~r~---- 243 (302)
T 2xn4_A 176 ECYNATTNEWTYI-----AEMSTRRSGAGVGVLNNLLYAVGGHDGP---LVRKSVEVYDPTTNAWRQVADMNMCRR---- 243 (302)
T ss_dssp EEEETTTTEEEEE-----CCCSSCCBSCEEEEETTEEEEECCBSSS---SBCCCEEEEETTTTEEEEECCCSSCCB----
T ss_pred EEEeCCCCcEEEC-----CCCccccccccEEEECCEEEEECCCCCC---cccceEEEEeCCCCCEeeCCCCCCccc----
Confidence 9999999999853 4566666666788899999999986432 124568888888899999998875321
Q ss_pred CCCceeEEeeCCCEEEEEeCC-----CCeEEEEECCCCcEEEcc-CCCC
Q 015511 341 EFDDVFASSGTDDLIYIQSYG-----APSLLVYDMNLKQWRWSH-KCPV 383 (405)
Q Consensus 341 ~~~~~~~~~~~~~~i~~~~~~-----~~~~~~Yd~~~~~w~~l~-~~p~ 383 (405)
..++...++.||+.... ...+.+||+++++|+.++ .+|.
T Consensus 244 ----~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 288 (302)
T 2xn4_A 244 ----NAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMST 288 (302)
T ss_dssp ----SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCSS
T ss_pred ----cCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECCcccCc
Confidence 11233347788887531 357999999999999997 5554
No 6
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.85 E-value=1.9e-19 Score=164.04 Aligned_cols=246 Identities=13% Similarity=0.177 Sum_probs=176.1
Q ss_pred eeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCC----CceEEEEeCcccc---eeeccCCCCCCCCccceeE
Q 015511 105 IGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDS----RSELYVCNPISKS---WKKLEEPPGLKFSDYSALS 177 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~----~~~~~v~NP~T~~---~~~lP~~~~~~~~~~~~~~ 177 (405)
....||+..++|..++....++..+.....+|.|++.++.. ...++++||.|++ |..++++|..+.. +. +
T Consensus 32 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~-~~--~ 108 (301)
T 2vpj_A 32 VVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL-AG--A 108 (301)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS-CE--E
T ss_pred EEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc-ee--E
Confidence 56789999999998864334444556666788888876632 3579999999999 9999988765522 22 2
Q ss_pred EEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCc
Q 015511 178 LSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENR 257 (405)
Q Consensus 178 ~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~ 257 (405)
...+. +|+++|+.... . ....+++||..+++|+... + ++..+..+..+.++|+||++++..+ ....
T Consensus 109 ~~~~~-----~lyv~GG~~~~-~---~~~~~~~~d~~~~~W~~~~-~-~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~ 174 (301)
T 2vpj_A 109 TTLGD-----MIYVSGGFDGS-R---RHTSMERYDPNIDQWSMLG-D-MQTAREGAGLVVASGVIYCLGGYDG---LNIL 174 (301)
T ss_dssp EEETT-----EEEEECCBCSS-C---BCCEEEEEETTTTEEEEEE-E-CSSCCBSCEEEEETTEEEEECCBCS---SCBC
T ss_pred EEECC-----EEEEEcccCCC-c---ccceEEEEcCCCCeEEECC-C-CCCCcccceEEEECCEEEEECCCCC---Cccc
Confidence 22222 78888875421 1 1357999999999999874 3 2334556677888999999986532 2234
Q ss_pred cEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHh
Q 015511 258 HGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQ 337 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~ 337 (405)
..+.+||+.+++|+.+ .++|..+....++..+|+||++++.... .....+.+|+++.++|+++..+|....
T Consensus 175 ~~~~~~d~~~~~W~~~-----~~~p~~r~~~~~~~~~~~i~v~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~p~~r~- 245 (301)
T 2vpj_A 175 NSVEKYDPHTGHWTNV-----TPMATKRSGAGVALLNDHIYVVGGFDGT---AHLSSVEAYNIRTDSWTTVTSMTTPRC- 245 (301)
T ss_dssp CCEEEEETTTTEEEEE-----CCCSSCCBSCEEEEETTEEEEECCBCSS---SBCCCEEEEETTTTEEEEECCCSSCCB-
T ss_pred ceEEEEeCCCCcEEeC-----CCCCcccccceEEEECCEEEEEeCCCCC---cccceEEEEeCCCCcEEECCCCCCccc-
Confidence 6799999999999853 4566666666788899999999986432 124568888888899999988875322
Q ss_pred ccCCCCceeEEeeCCCEEEEEeCC-----CCeEEEEECCCCcEEEccCCCC
Q 015511 338 GFGEFDDVFASSGTDDLIYIQSYG-----APSLLVYDMNLKQWRWSHKCPV 383 (405)
Q Consensus 338 ~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~Yd~~~~~w~~l~~~p~ 383 (405)
..++...++.||+.... ...+.+||+++++|+.++.+|.
T Consensus 246 -------~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 289 (301)
T 2vpj_A 246 -------YVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGT 289 (301)
T ss_dssp -------SCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEEE
T ss_pred -------ceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCCc
Confidence 12233347778887531 1578999999999999988775
No 7
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.76 E-value=4.1e-17 Score=149.16 Aligned_cols=222 Identities=15% Similarity=0.150 Sum_probs=152.9
Q ss_pred ecCceEEEEeC---CCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEE
Q 015511 133 SSYGLVCFMDN---DSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIH 209 (405)
Q Consensus 133 s~~Gll~~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~ 209 (405)
..++.|++.++ .....++++||.+++|..++.+|..+.. +. +...+. +|+++|+.............++
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~--~~~~~~-----~lyv~GG~~~~~~~~~~~~~~~ 93 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LA--GCVVGG-----LLYAVGGRNNSPDGNTDSSALD 93 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CE--EEEETT-----EEEEECCEEEETTEEEECCCEE
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ce--EEEECC-----EEEEECCCcCCCCCCeecceEE
Confidence 33455555544 2236799999999999999988765532 22 222222 7888887521001111234689
Q ss_pred EEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCc
Q 015511 210 IYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGR 289 (405)
Q Consensus 210 vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~ 289 (405)
+||..+++|+... + ++..+..+..+.++|+||++++..+ ......+..||+.+++|+.+ .++|..+....
T Consensus 94 ~~d~~~~~W~~~~-~-~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~yd~~~~~W~~~-----~~~p~~r~~~~ 163 (308)
T 1zgk_A 94 CYNPMTNQWSPCA-P-MSVPRNRIGVGVIDGHIYAVGGSHG---CIHHNSVERYEPERDEWHLV-----APMLTRRIGVG 163 (308)
T ss_dssp EEETTTTEEEECC-C-CSSCCBTCEEEEETTEEEEECCEET---TEECCCEEEEETTTTEEEEC-----CCCSSCCBSCE
T ss_pred EECCCCCeEeECC-C-CCcCccccEEEEECCEEEEEcCCCC---CcccccEEEECCCCCeEeEC-----CCCCccccceE
Confidence 9999999999875 3 3334556677888999999986542 12235799999999999853 45666666667
Q ss_pred eEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-----CCe
Q 015511 290 LMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-----APS 364 (405)
Q Consensus 290 l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~ 364 (405)
++..+|+||++++..... ....+.+|+++.++|+.+..+|.... ..++...++.||+.... ...
T Consensus 164 ~~~~~~~iyv~GG~~~~~---~~~~~~~yd~~~~~W~~~~~~p~~r~--------~~~~~~~~~~iyv~GG~~~~~~~~~ 232 (308)
T 1zgk_A 164 VAVLNRLLYAVGGFDGTN---RLNSAECYYPERNEWRMITAMNTIRS--------GAGVCVLHNCIYAAGGYDGQDQLNS 232 (308)
T ss_dssp EEEETTEEEEECCBCSSC---BCCCEEEEETTTTEEEECCCCSSCCB--------SCEEEEETTEEEEECCBCSSSBCCC
T ss_pred EEEECCEEEEEeCCCCCC---cCceEEEEeCCCCeEeeCCCCCCccc--------cceEEEECCEEEEEeCCCCCCccce
Confidence 788899999999864321 24668888888899999988875321 12233347788887531 368
Q ss_pred EEEEECCCCcEEEccCCCC
Q 015511 365 LLVYDMNLKQWRWSHKCPV 383 (405)
Q Consensus 365 ~~~Yd~~~~~w~~l~~~p~ 383 (405)
+.+||+++++|+.++.+|.
T Consensus 233 v~~yd~~~~~W~~~~~~p~ 251 (308)
T 1zgk_A 233 VERYDVETETWTFVAPMKH 251 (308)
T ss_dssp EEEEETTTTEEEECCCCSS
T ss_pred EEEEeCCCCcEEECCCCCC
Confidence 9999999999999987774
No 8
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.76 E-value=7.5e-17 Score=150.56 Aligned_cols=271 Identities=11% Similarity=0.074 Sum_probs=166.9
Q ss_pred CEEEEEecCCCCeeEEecCC--CCeeeeccC-CCCCCCCeEEEecCceEEEEeCC-C--------CceEEEEeCccccee
Q 015511 93 PWYFMFTSSDEPIGYAYDPI--LRKWYGIEL-PCIETSNWFIASSYGLVCFMDND-S--------RSELYVCNPISKSWK 160 (405)
Q Consensus 93 p~l~~~~~~~~~~~~~~d~~--~~~w~~~~~-p~~~~~~~~~~s~~Gll~~~~~~-~--------~~~~~v~NP~T~~~~ 160 (405)
..++++........+.||+. +++|..++. |..++..+.++..+|.|++.++. . ...++++||.|++|.
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~ 99 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV 99 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEE
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEE
Confidence 44555554334467889987 489998863 42555566677778999888764 1 257999999999999
Q ss_pred eccCCC-CCCCCccceeEEEEeCCCCcEEEEEEeeeccCCC------------------------------ccccceEEE
Q 015511 161 KLEEPP-GLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGN------------------------------FFQWELSIH 209 (405)
Q Consensus 161 ~lP~~~-~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~------------------------------~~~~~~~~~ 209 (405)
.+++++ ..+ ....+...+. +|+++|+...... .......++
T Consensus 100 ~~~~~~p~~r---~~~~~~~~~~-----~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (357)
T 2uvk_A 100 KLMSHAPMGM---AGHVTFVHNG-----KAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLL 171 (357)
T ss_dssp ECSCCCSSCC---SSEEEEEETT-----EEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEE
T ss_pred ECCCCCCccc---ccceEEEECC-----EEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEE
Confidence 999876 333 2222222333 7888887431100 000125899
Q ss_pred EEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEEC--CCCcchhhhcccccccCCcccc
Q 015511 210 IYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNL--SSRSSHALLIKSFIPVPCALTC 287 (405)
Q Consensus 210 vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~--~~~~w~~~~~~~~~~~p~~~~~ 287 (405)
+||..+++|+... +++...+..+..+.++++||++++..+ .......+..||+ .+++|+.+. ..+.|.....
T Consensus 172 ~yd~~~~~W~~~~-~~p~~~~~~~~~~~~~~~iyv~GG~~~--~~~~~~~v~~~d~d~~~~~W~~~~---~~~~~~~~~~ 245 (357)
T 2uvk_A 172 SFDPSTQQWSYAG-ESPWYGTAGAAVVNKGDKTWLINGEAK--PGLRTDAVFELDFTGNNLKWNKLA---PVSSPDGVAG 245 (357)
T ss_dssp EEETTTTEEEEEE-ECSSCCCBSCEEEEETTEEEEECCEEE--TTEECCCEEEEECC---CEEEECC---CSSTTTCCBS
T ss_pred EEeCCCCcEEECC-CCCCCCcccccEEEECCEEEEEeeecC--CCcccCceEEEEecCCCCcEEecC---CCCCCccccc
Confidence 9999999999874 333333344677888999999986431 1112346888876 999998531 1222333334
Q ss_pred CceEEeCCcEEEEEcccccc--------------ccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCC
Q 015511 288 GRLMNLKEKLVMVGGIGKQD--------------RPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDD 353 (405)
Q Consensus 288 ~~l~~~~G~L~~v~~~~~~~--------------~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~ 353 (405)
..++..+|+||++++..... .......+++|+++.++|+++..+|..... .++...++
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------~~~~~~~~ 317 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--------GVSLPWNN 317 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--------SEEEEETT
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--------ceeEEeCC
Confidence 45788999999999853210 011124678888888999999988854221 12333567
Q ss_pred EEEEEeCC------CCeEEEEECCCCcEEEccCCCCCC
Q 015511 354 LIYIQSYG------APSLLVYDMNLKQWRWSHKCPVTK 385 (405)
Q Consensus 354 ~i~~~~~~------~~~~~~Yd~~~~~w~~l~~~p~~~ 385 (405)
.||+.... ...+++|++++++|.++.+.|-+|
T Consensus 318 ~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~ 355 (357)
T 2uvk_A 318 SLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHHHH 355 (357)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC------
T ss_pred EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecccccc
Confidence 77776431 257889999999999998877654
No 9
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.75 E-value=1.3e-16 Score=145.72 Aligned_cols=218 Identities=13% Similarity=0.123 Sum_probs=152.4
Q ss_pred ceEEEEeCC-CCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCC
Q 015511 136 GLVCFMDND-SRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSD 214 (405)
Q Consensus 136 Gll~~~~~~-~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~ 214 (405)
+.|++.++. ....++++||.+++|..++++|..+.. +. +...+. +|+++|+.. . .....+++||..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~--~~~~~~-----~lyv~GG~~--~---~~~~~~~~~d~~ 78 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRD-AA--CVFWDN-----VVYILGGSQ--L---FPIKRMDCYNVV 78 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBS-CE--EEEETT-----EEEEECCBS--S---SBCCEEEEEETT
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccce-eE--EEEECC-----EEEEEeCCC--C---CCcceEEEEeCC
Confidence 455555442 247899999999999999988865522 22 222322 688888754 1 124579999999
Q ss_pred CCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeC
Q 015511 215 TMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLK 294 (405)
Q Consensus 215 ~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~ 294 (405)
+++|+... + ++..+..+.++.++++||++++... .......+..||+.+++|+. ..++|..+....++..+
T Consensus 79 ~~~W~~~~-~-~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~~d~~~~~W~~-----~~~~p~~r~~~~~~~~~ 149 (306)
T 3ii7_A 79 KDSWYSKL-G-PPTPRDSLAACAAEGKIYTSGGSEV--GNSALYLFECYDTRTESWHT-----KPSMLTQRCSHGMVEAN 149 (306)
T ss_dssp TTEEEEEE-C-CSSCCBSCEEEEETTEEEEECCBBT--TBSCCCCEEEEETTTTEEEE-----ECCCSSCCBSCEEEEET
T ss_pred CCeEEECC-C-CCccccceeEEEECCEEEEECCCCC--CCcEeeeEEEEeCCCCceEe-----CCCCcCCcceeEEEEEC
Confidence 99998864 3 3344556778888999999986531 12334579999999999985 34566666666788899
Q ss_pred CcEEEEEcccccccc-CccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-----CCeEEEE
Q 015511 295 EKLVMVGGIGKQDRP-DIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-----APSLLVY 368 (405)
Q Consensus 295 G~L~~v~~~~~~~~~-~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~Y 368 (405)
|+||++++....... .....+.+|+++.++|+++..+|..... .++...++.||+.... ...+.+|
T Consensus 150 ~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------~~~~~~~~~i~v~GG~~~~~~~~~~~~y 221 (306)
T 3ii7_A 150 GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN--------HGLVFVKDKIFAVGGQNGLGGLDNVEYY 221 (306)
T ss_dssp TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS--------CEEEEETTEEEEECCEETTEEBCCEEEE
T ss_pred CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc--------ceEEEECCEEEEEeCCCCCCCCceEEEe
Confidence 999999986432110 0146688888888999999888753221 1233347778886421 3579999
Q ss_pred ECCCCcEEEccCCCC
Q 015511 369 DMNLKQWRWSHKCPV 383 (405)
Q Consensus 369 d~~~~~w~~l~~~p~ 383 (405)
|+++++|+.++++|.
T Consensus 222 d~~~~~W~~~~~~p~ 236 (306)
T 3ii7_A 222 DIKLNEWKMVSPMPW 236 (306)
T ss_dssp ETTTTEEEECCCCSC
T ss_pred eCCCCcEEECCCCCC
Confidence 999999999988775
No 10
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.75 E-value=2.1e-16 Score=143.88 Aligned_cols=217 Identities=13% Similarity=0.145 Sum_probs=153.0
Q ss_pred cCceEEEEeC-CC----CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEE
Q 015511 134 SYGLVCFMDN-DS----RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSI 208 (405)
Q Consensus 134 ~~Gll~~~~~-~~----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~ 208 (405)
.+|.|++.++ .. ...++++||.+++|..++.+|..+. .+. +...+. +|+++|+... . .....+
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~--~~~~~~-----~l~v~GG~~~-~---~~~~~~ 80 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRR-YVA--SVSLHD-----RIYVIGGYDG-R---SRLSSV 80 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCB-SCE--EEEETT-----EEEEECCBCS-S---CBCCCE
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhc-ccc--EEEECC-----EEEEEcCCCC-C---ccCceE
Confidence 4555666555 21 3578999999999999998876442 222 222222 7888887531 1 113578
Q ss_pred EEEeCCCCC---cccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcc
Q 015511 209 HIYDSDTMM---WVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCAL 285 (405)
Q Consensus 209 ~vy~s~~~~---W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~ 285 (405)
++||..+++ |+... + ++..+..+.++.+++++|++++..+ ......+..||+.+++|+.+ .++|..+
T Consensus 81 ~~~d~~~~~~~~W~~~~-~-~p~~r~~~~~~~~~~~lyv~GG~~~---~~~~~~~~~~d~~~~~W~~~-----~~~p~~r 150 (301)
T 2vpj_A 81 ECLDYTADEDGVWYSVA-P-MNVRRGLAGATTLGDMIYVSGGFDG---SRRHTSMERYDPNIDQWSML-----GDMQTAR 150 (301)
T ss_dssp EEEETTCCTTCCCEEEC-C-CSSCCBSCEEEEETTEEEEECCBCS---SCBCCEEEEEETTTTEEEEE-----EECSSCC
T ss_pred EEEECCCCCCCeeEECC-C-CCCCccceeEEEECCEEEEEcccCC---CcccceEEEEcCCCCeEEEC-----CCCCCCc
Confidence 999999999 99874 3 3334556678888999999986542 22346899999999999853 4556656
Q ss_pred ccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC----
Q 015511 286 TCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG---- 361 (405)
Q Consensus 286 ~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---- 361 (405)
....++..+|+||++++.... .....+.+|+++.++|+++..+|.... ..++...++.||+....
T Consensus 151 ~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~d~~~~~W~~~~~~p~~r~--------~~~~~~~~~~i~v~GG~~~~~ 219 (301)
T 2vpj_A 151 EGAGLVVASGVIYCLGGYDGL---NILNSVEKYDPHTGHWTNVTPMATKRS--------GAGVALLNDHIYVVGGFDGTA 219 (301)
T ss_dssp BSCEEEEETTEEEEECCBCSS---CBCCCEEEEETTTTEEEEECCCSSCCB--------SCEEEEETTEEEEECCBCSSS
T ss_pred ccceEEEECCEEEEECCCCCC---cccceEEEEeCCCCcEEeCCCCCcccc--------cceEEEECCEEEEEeCCCCCc
Confidence 666778889999999986432 135668888888899999988875322 12333347788887531
Q ss_pred -CCeEEEEECCCCcEEEccCCCC
Q 015511 362 -APSLLVYDMNLKQWRWSHKCPV 383 (405)
Q Consensus 362 -~~~~~~Yd~~~~~w~~l~~~p~ 383 (405)
...+.+||+++++|+.++.+|.
T Consensus 220 ~~~~v~~yd~~~~~W~~~~~~p~ 242 (301)
T 2vpj_A 220 HLSSVEAYNIRTDSWTTVTSMTT 242 (301)
T ss_dssp BCCCEEEEETTTTEEEEECCCSS
T ss_pred ccceEEEEeCCCCcEEECCCCCC
Confidence 4589999999999999987774
No 11
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.74 E-value=2.7e-16 Score=143.19 Aligned_cols=218 Identities=16% Similarity=0.210 Sum_probs=152.0
Q ss_pred CceEEEEeCC---CCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEE
Q 015511 135 YGLVCFMDND---SRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIY 211 (405)
Q Consensus 135 ~Gll~~~~~~---~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy 211 (405)
++.|++.++. ....++++||.+++|..++.+|..+. .+. +...+. +|+++|+.... . ....+++|
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~--~~~~~~-----~lyv~GG~~~~-~---~~~~~~~~ 82 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRC-RAG--MVYMAG-----LVFAVGGFNGS-L---RVRTVDSY 82 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCB-SCE--EEEETT-----EEEEESCBCSS-S---BCCCEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccc-cce--EEEECC-----EEEEEeCcCCC-c---cccceEEE
Confidence 4445555442 13578999999999999998876552 222 222222 68888875321 1 13578999
Q ss_pred eCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceE
Q 015511 212 DSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM 291 (405)
Q Consensus 212 ~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~ 291 (405)
|..+++|+... + ++..+..+.++.++|+||++++..+ ......+..||+.+++|+.+ .++|..+....++
T Consensus 83 d~~~~~W~~~~-~-~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~~d~~~~~W~~~-----~~~p~~r~~~~~~ 152 (302)
T 2xn4_A 83 DPVKDQWTSVA-N-MRDRRSTLGAAVLNGLLYAVGGFDG---STGLSSVEAYNIKSNEWFHV-----APMNTRRSSVGVG 152 (302)
T ss_dssp ETTTTEEEEEC-C-CSSCCBSCEEEEETTEEEEEEEECS---SCEEEEEEEEETTTTEEEEE-----CCCSSCCBSCEEE
T ss_pred CCCCCceeeCC-C-CCccccceEEEEECCEEEEEcCCCC---CccCceEEEEeCCCCeEeec-----CCCCCcccCceEE
Confidence 99999999875 3 3344556778888999999997642 22345799999999999853 4566666666778
Q ss_pred EeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-----CCeEE
Q 015511 292 NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-----APSLL 366 (405)
Q Consensus 292 ~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~ 366 (405)
..+|+||++++...... .....+.+|+++.++|+++..+|.... ..++...++.||+.... ...+.
T Consensus 153 ~~~~~iyv~GG~~~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r~--------~~~~~~~~~~iyv~GG~~~~~~~~~~~ 223 (302)
T 2xn4_A 153 VVGGLLYAVGGYDVASR-QCLSTVECYNATTNEWTYIAEMSTRRS--------GAGVGVLNNLLYAVGGHDGPLVRKSVE 223 (302)
T ss_dssp EETTEEEEECCEETTTT-EECCCEEEEETTTTEEEEECCCSSCCB--------SCEEEEETTEEEEECCBSSSSBCCCEE
T ss_pred EECCEEEEEeCCCCCCC-ccccEEEEEeCCCCcEEECCCCccccc--------cccEEEECCEEEEECCCCCCcccceEE
Confidence 89999999998643210 124568888888899999988875322 12333447788887531 35899
Q ss_pred EEECCCCcEEEccCCCC
Q 015511 367 VYDMNLKQWRWSHKCPV 383 (405)
Q Consensus 367 ~Yd~~~~~w~~l~~~p~ 383 (405)
+||+++++|+.++.+|.
T Consensus 224 ~yd~~~~~W~~~~~~~~ 240 (302)
T 2xn4_A 224 VYDPTTNAWRQVADMNM 240 (302)
T ss_dssp EEETTTTEEEEECCCSS
T ss_pred EEeCCCCCEeeCCCCCC
Confidence 99999999999987774
No 12
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.73 E-value=1.1e-16 Score=149.40 Aligned_cols=235 Identities=16% Similarity=0.088 Sum_probs=151.1
Q ss_pred CCeEEEecCceEEEEeCCCCceEEEEeCc--ccceeeccCCC-CCCCCccceeEEEEeCCCCcEEEEEEeeecc-CCCcc
Q 015511 127 SNWFIASSYGLVCFMDNDSRSELYVCNPI--SKSWKKLEEPP-GLKFSDYSALSLSVDRVSHRYTVSIVKSKQV-TGNFF 202 (405)
Q Consensus 127 ~~~~~~s~~Gll~~~~~~~~~~~~v~NP~--T~~~~~lP~~~-~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~-~~~~~ 202 (405)
.....+..+|.|++.++.....++++|+. +++|..++++| .++ ..+. +..++. +|+++|+... .....
T Consensus 11 ~~~~~~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R-~~~~--~~~~~~-----~lyv~GG~~~~~~~~~ 82 (357)
T 2uvk_A 11 KSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPR-DQAT--SAFIDG-----NLYVFGGIGKNSEGLT 82 (357)
T ss_dssp CSCEEEEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCC-BSCE--EEEETT-----EEEEECCEEECTTSCE
T ss_pred cceEEEEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcC-ccce--EEEECC-----EEEEEcCCCCCCCccc
Confidence 34455566899999887656789999998 49999999887 444 2222 222322 7898887621 11111
Q ss_pred ccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCC------------------------------
Q 015511 203 QWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGG------------------------------ 252 (405)
Q Consensus 203 ~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~------------------------------ 252 (405)
.....+++||..+++|+.... +++..+..+.++.++|+||++++..+..
T Consensus 83 ~~~~~v~~yd~~~~~W~~~~~-~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (357)
T 2uvk_A 83 QVFNDVHKYNPKTNSWVKLMS-HAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA 161 (357)
T ss_dssp EECCCEEEEETTTTEEEECSC-CCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCG
T ss_pred eeeccEEEEeCCCCcEEECCC-CCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccc
Confidence 224579999999999999753 3324455566677999999999642100
Q ss_pred -CCCCccEEEEEECCCCcchhhhcccccccCCcccc-CceEEeCCcEEEEEccccccccCccceEEEEEE--eCceeEEE
Q 015511 253 -APENRHGLISFNLSSRSSHALLIKSFIPVPCALTC-GRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVL--NGKEWQEV 328 (405)
Q Consensus 253 -~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l--~~~~W~~v 328 (405)
.......+.+||+.+++|+.+ .++|..... ..++..+|+||++++..... .....+.+|++ +..+|+++
T Consensus 162 ~~~~~~~~v~~yd~~~~~W~~~-----~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~--~~~~~v~~~d~d~~~~~W~~~ 234 (357)
T 2uvk_A 162 EDYFFNKFLLSFDPSTQQWSYA-----GESPWYGTAGAAVVNKGDKTWLINGEAKPG--LRTDAVFELDFTGNNLKWNKL 234 (357)
T ss_dssp GGGCCCCEEEEEETTTTEEEEE-----EECSSCCCBSCEEEEETTEEEEECCEEETT--EECCCEEEEECC---CEEEEC
T ss_pred cccCCcccEEEEeCCCCcEEEC-----CCCCCCCcccccEEEECCEEEEEeeecCCC--cccCceEEEEecCCCCcEEec
Confidence 001125899999999999853 455543333 56788999999999864221 12345666766 46899999
Q ss_pred eccChhHHhccCCCCceeEEeeCCCEEEEEeCCC----------------------CeEEEEECCCCcEEEccCCCC
Q 015511 329 ARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGA----------------------PSLLVYDMNLKQWRWSHKCPV 383 (405)
Q Consensus 329 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~~~~Yd~~~~~w~~l~~~p~ 383 (405)
..++..... ...++...++.||+..... ..+.+||+++++|+.++.+|.
T Consensus 235 ~~~~~~~~~------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 305 (357)
T 2uvk_A 235 APVSSPDGV------AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ 305 (357)
T ss_dssp CCSSTTTCC------BSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSS
T ss_pred CCCCCCccc------ccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCC
Confidence 888643211 1112344577888865310 368899999999999988775
No 13
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.72 E-value=3.7e-16 Score=143.28 Aligned_cols=220 Identities=12% Similarity=0.104 Sum_probs=146.2
Q ss_pred eEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccC--CCccccceEEEEEeCC
Q 015511 137 LVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVT--GNFFQWELSIHIYDSD 214 (405)
Q Consensus 137 ll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~--~~~~~~~~~~~vy~s~ 214 (405)
.|++.++ ..++++||.|++|.. +++|.+. ......+...+ -+|+++|+.... .........+++||..
T Consensus 6 ~l~~~GG---~~~~~yd~~~~~W~~-~~~~~p~-~r~~~~~~~~~-----~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~ 75 (315)
T 4asc_A 6 LIFMISE---EGAVAYDPAANECYC-ASLSSQV-PKNHVSLVTKE-----NQVFVAGGLFYNEDNKEDPMSAYFLQFDHL 75 (315)
T ss_dssp EEEEEET---TEEEEEETTTTEEEE-EECCCCS-CSSEEEEECTT-----CCEEEEEEEEECSSCSSSCEEEEEEEEETT
T ss_pred EEEEEcC---CceEEECCCCCeEec-CCCCCCC-CccceEEEEEC-----CEEEEEcCcccCCCCCccccccceEEecCC
Confidence 4455554 689999999999987 4443221 11111111111 167888874211 1111112348999999
Q ss_pred CCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeC
Q 015511 215 TMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLK 294 (405)
Q Consensus 215 ~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~ 294 (405)
+++|+... + ++..+..+..+.++++||++++............+..||+.+++|+. ..++|..+....++..+
T Consensus 76 ~~~W~~~~-~-~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~-----~~~~p~~r~~~~~~~~~ 148 (315)
T 4asc_A 76 DSEWLGMP-P-LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE-----SDPLPYVVYGHTVLSHM 148 (315)
T ss_dssp TTEEEECC-C-BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE-----CCCCSSCCBSCEEEEET
T ss_pred CCeEEECC-C-CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE-----CCCCCCcccceeEEEEC
Confidence 99998864 3 33445567788889999999875311113344679999999999985 34667666667788899
Q ss_pred CcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-----CCeEEEEE
Q 015511 295 EKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-----APSLLVYD 369 (405)
Q Consensus 295 G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~Yd 369 (405)
|+||++++.... ......+.+|++..++|+++..+|..... .++...++.||+.... ...+.+||
T Consensus 149 ~~iyv~GG~~~~--~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------~~~~~~~~~iyv~GG~~~~~~~~~~~~yd 218 (315)
T 4asc_A 149 DLVYVIGGKGSD--RKCLNKMCVYDPKKFEWKELAPMQTARSL--------FGATVHDGRIIVAAGVTDTGLTSSAEVYS 218 (315)
T ss_dssp TEEEEECCBCTT--SCBCCCEEEEETTTTEEEECCCCSSCCBS--------CEEEEETTEEEEEEEECSSSEEEEEEEEE
T ss_pred CEEEEEeCCCCC--CcccceEEEEeCCCCeEEECCCCCCchhc--------eEEEEECCEEEEEeccCCCCccceEEEEE
Confidence 999999986322 22356688888888999999888753221 2233347788886531 24799999
Q ss_pred CCCCcEEEccCCCC
Q 015511 370 MNLKQWRWSHKCPV 383 (405)
Q Consensus 370 ~~~~~w~~l~~~p~ 383 (405)
+++++|+.++++|.
T Consensus 219 ~~~~~W~~~~~~p~ 232 (315)
T 4asc_A 219 ITDNKWAPFEAFPQ 232 (315)
T ss_dssp TTTTEEEEECCCSS
T ss_pred CCCCeEEECCCCCC
Confidence 99999999988764
No 14
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.68 E-value=1.6e-15 Score=139.23 Aligned_cols=202 Identities=14% Similarity=0.201 Sum_probs=142.7
Q ss_pred eEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCC------CceEEEEeCcccceeeccCCCCCCCCccceeEEE
Q 015511 106 GYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDS------RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLS 179 (405)
Q Consensus 106 ~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~------~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~ 179 (405)
...||+..++|..++....++..+..+..+|.|++.++.. ...++++||.|++|..++++|..+.. + .+..
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~--~~~~ 156 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-H--NVIS 156 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-C--EEEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-c--EEEE
Confidence 5689999999998864444555666677788888876532 24699999999999999988755422 2 2222
Q ss_pred EeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccE
Q 015511 180 VDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHG 259 (405)
Q Consensus 180 ~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~ 259 (405)
.+. +|+++|+...... ....+++||..+++|+... + ++..+..+.++.++|+||++++..+ ......
T Consensus 157 ~~~-----~iyv~GG~~~~~~---~~~~~~~yd~~~~~W~~~~-~-~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~ 223 (318)
T 2woz_A 157 HNG-----MIYCLGGKTDDKK---CTNRVFIYNPKKGDWKDLA-P-MKTPRSMFGVAIHKGKIVIAGGVTE---DGLSAS 223 (318)
T ss_dssp ETT-----EEEEECCEESSSC---BCCCEEEEETTTTEEEEEC-C-CSSCCBSCEEEEETTEEEEEEEEET---TEEEEE
T ss_pred ECC-----EEEEEcCCCCCCC---ccceEEEEcCCCCEEEECC-C-CCCCcccceEEEECCEEEEEcCcCC---CCccce
Confidence 332 7888887532221 1347999999999999874 3 3334556677889999999997642 112357
Q ss_pred EEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccc------cCccceEEEEEEeCceeEEE
Q 015511 260 LISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDR------PDIIKGIGIWVLNGKEWQEV 328 (405)
Q Consensus 260 i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~------~~~~~~~~vw~l~~~~W~~v 328 (405)
+..||+.+++|+.+ .++|..+....++..+|+||++++...... ......+.+|++++++|+++
T Consensus 224 ~~~yd~~~~~W~~~-----~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 224 VEAFDLKTNKWEVM-----TEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEEETTTCCEEEC-----CCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEEEECCCCeEEEC-----CCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 89999999999853 456666666678899999999998643210 01235577777778999998
No 15
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.61 E-value=6.2e-15 Score=148.70 Aligned_cols=252 Identities=14% Similarity=0.076 Sum_probs=156.1
Q ss_pred eEEecCCCCeeeecc-CCCCCCCCeEEEec-CceEEEEeCCCC----------ceEEEEeCcccceeeccCCCCCCCCcc
Q 015511 106 GYAYDPILRKWYGIE-LPCIETSNWFIASS-YGLVCFMDNDSR----------SELYVCNPISKSWKKLEEPPGLKFSDY 173 (405)
Q Consensus 106 ~~~~d~~~~~w~~~~-~p~~~~~~~~~~s~-~Gll~~~~~~~~----------~~~~v~NP~T~~~~~lP~~~~~~~~~~ 173 (405)
...||+..++|..+. +|. ......... +|.|++.++... ..+++|||.|++|..++.++..+....
T Consensus 168 ~~~~dp~~~~W~~~~~~P~--~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~ 245 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPI--VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFC 245 (656)
T ss_dssp CCCCCTTSCEEEEEEECSS--CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSS
T ss_pred cccCCCCCCeeeeeccCCC--CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcc
Confidence 346899999998753 443 223333333 888888764211 268999999999999988765443222
Q ss_pred ceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE-CcEEEeeEEecCCC
Q 015511 174 SALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC-DGVLYFLIYATGGG 252 (405)
Q Consensus 174 ~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~-~g~iy~l~~~~~~~ 252 (405)
..+++..+. +|+++|+... ..+++||..+++|.... + ++..+..+.++.+ +|+||++++.. .
T Consensus 246 ~~~~~~~~g-----~lyv~GG~~~--------~~v~~yd~~t~~W~~~~-~-~~~~R~~~s~~~~~dg~iyv~GG~~--~ 308 (656)
T 1k3i_A 246 PGISMDGNG-----QIVVTGGNDA--------KKTSLYDSSSDSWIPGP-D-MQVARGYQSSATMSDGRVFTIGGSW--S 308 (656)
T ss_dssp CEEEECTTS-----CEEEECSSST--------TCEEEEEGGGTEEEECC-C-CSSCCSSCEEEECTTSCEEEECCCC--C
T ss_pred ccccCCCCC-----CEEEeCCCCC--------CceEEecCcCCceeECC-C-CCccccccceEEecCCeEEEEeCcc--c
Confidence 223332222 6888887431 26899999999999874 3 3444556677788 99999998632 1
Q ss_pred CCCCccEEEEEECCCCcchhhhcccccccCCcc-----------------------------------------------
Q 015511 253 APENRHGLISFNLSSRSSHALLIKSFIPVPCAL----------------------------------------------- 285 (405)
Q Consensus 253 ~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~----------------------------------------------- 285 (405)
.......+..||+.+++|+.+-.....+++...
T Consensus 309 ~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~ 388 (656)
T 1k3i_A 309 GGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR 388 (656)
T ss_dssp SSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEEC
T ss_pred CCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcc
Confidence 122345799999999999863100001111110
Q ss_pred ----------ccCceE---EeCCcEEEEEccccccccCcc---ceEEEEEEeCceeEEEe--ccChhHHhccCCCCceeE
Q 015511 286 ----------TCGRLM---NLKEKLVMVGGIGKQDRPDII---KGIGIWVLNGKEWQEVA--RMPHKFFQGFGEFDDVFA 347 (405)
Q Consensus 286 ----------~~~~l~---~~~G~L~~v~~~~~~~~~~~~---~~~~vw~l~~~~W~~v~--~i~~~~~~~~~~~~~~~~ 347 (405)
.....+ ..+|+||++++.......... ..+++|+++.+.|.++. .||..... .-+
T Consensus 389 ~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~-------~~~ 461 (656)
T 1k3i_A 389 QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF-------HTS 461 (656)
T ss_dssp EETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBS-------CEE
T ss_pred ccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCccc-------CCe
Confidence 011112 248999999985322111112 25777777778999987 77653211 112
Q ss_pred EeeCCCEEEEEeCC-----------CCeEEEEECCCCcEEEccCCCC
Q 015511 348 SSGTDDLIYIQSYG-----------APSLLVYDMNLKQWRWSHKCPV 383 (405)
Q Consensus 348 ~~~~~~~i~~~~~~-----------~~~~~~Yd~~~~~w~~l~~~p~ 383 (405)
+...++.||+.... ...+.+||+++++|+.++.+|.
T Consensus 462 ~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~ 508 (656)
T 1k3i_A 462 VVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSI 508 (656)
T ss_dssp EECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSS
T ss_pred EECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCC
Confidence 23336667766421 2578999999999999987664
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.56 E-value=2.8e-13 Score=136.96 Aligned_cols=220 Identities=11% Similarity=0.056 Sum_probs=145.3
Q ss_pred EEecCceEEEEeCC---CCceEEEEeCcccceeecc-C-----CCCCCCCccceeEEEE--eCCCCcEEEEEEeeeccCC
Q 015511 131 IASSYGLVCFMDND---SRSELYVCNPISKSWKKLE-E-----PPGLKFSDYSALSLSV--DRVSHRYTVSIVKSKQVTG 199 (405)
Q Consensus 131 ~~s~~Gll~~~~~~---~~~~~~v~NP~T~~~~~lP-~-----~~~~~~~~~~~~~~~~--~~~~~~ykv~~~~~~~~~~ 199 (405)
+++.+|.|++.++. ..+.++++||.+++|..++ + +|..+ . ...+... +. +|+++||.....
T Consensus 393 ~~~~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R-~--~hs~~~~~~~~-----~lyv~GG~~~~~ 464 (695)
T 2zwa_A 393 VDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVAR-M--CHTFTTISRNN-----QLLLIGGRKAPH 464 (695)
T ss_dssp EEECSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCC-B--SCEEEEETTTT-----EEEEECCBSSTT
T ss_pred EEEECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccc-c--ceEEEEEccCC-----EEEEEcCCCCCC
Confidence 34477888888763 2357999999999999998 5 33333 2 1222222 22 689998764322
Q ss_pred CccccceEEEEEeCCCCCcccccccccccccCCCccEEE-CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccc
Q 015511 200 NFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC-DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSF 278 (405)
Q Consensus 200 ~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~-~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~ 278 (405)
. ....+++||..+++|+... + ++..+..+.++.+ +|+||++|+..+. . .+..||+.+++|+.+.. .
T Consensus 465 ~---~~~dv~~yd~~t~~W~~~~-~-~p~~R~~h~~~~~~~~~iyv~GG~~~~-----~-~v~~yd~~t~~W~~~~~--~ 531 (695)
T 2zwa_A 465 Q---GLSDNWIFDMKTREWSMIK-S-LSHTRFRHSACSLPDGNVLILGGVTEG-----P-AMLLYNVTEEIFKDVTP--K 531 (695)
T ss_dssp C---BCCCCEEEETTTTEEEECC-C-CSBCCBSCEEEECTTSCEEEECCBCSS-----C-SEEEEETTTTEEEECCC--S
T ss_pred C---ccccEEEEeCCCCcEEECC-C-CCCCcccceEEEEcCCEEEEECCCCCC-----C-CEEEEECCCCceEEccC--C
Confidence 1 1347899999999999974 3 3344566777775 9999999865421 1 79999999999985421 1
Q ss_pred cccCCccccCceEEeC---CcEEEEEccccccccCccceEEEEEEeCce------eEEEeccChhHHhccCCCCceeEEe
Q 015511 279 IPVPCALTCGRLMNLK---EKLVMVGGIGKQDRPDIIKGIGIWVLNGKE------WQEVARMPHKFFQGFGEFDDVFASS 349 (405)
Q Consensus 279 ~~~p~~~~~~~l~~~~---G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~------W~~v~~i~~~~~~~~~~~~~~~~~~ 349 (405)
.++|..+.....++++ |+||+++|..... ......+.+|+++.++ |+++..+|.. ..+ ..++.
T Consensus 532 g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~-~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~--~R~-----~~~~~ 603 (695)
T 2zwa_A 532 DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQ-TTVSDKAIIFKYDAENATEPITVIKKLQHPLF--QRY-----GSQIK 603 (695)
T ss_dssp SGGGGSCCBSCEEEEETTTTEEEEECCBCTTS-SCBCCEEEEEEECTTCSSCCEEEEEEEECGGG--CCB-----SCEEE
T ss_pred CCCCCcccceeEEEEeCCCCEEEEECCcCCCC-CeeeCcEEEEEccCCccccceEEEEcCCCCCC--Ccc-----cceEE
Confidence 1255555555545555 8999999863221 1235678888888887 8998876421 111 11222
Q ss_pred eCC-CEEEEEeC--------CCCeEEEEECCCCcEEEcc
Q 015511 350 GTD-DLIYIQSY--------GAPSLLVYDMNLKQWRWSH 379 (405)
Q Consensus 350 ~~~-~~i~~~~~--------~~~~~~~Yd~~~~~w~~l~ 379 (405)
..+ +.||+... ....+.+||+++++|+.++
T Consensus 604 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~ 642 (695)
T 2zwa_A 604 YITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP 642 (695)
T ss_dssp EEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECC
T ss_pred EeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEee
Confidence 334 78888653 1457999999999999753
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.46 E-value=3e-12 Score=129.04 Aligned_cols=215 Identities=12% Similarity=0.098 Sum_probs=138.1
Q ss_pred eeEEecCCCCeeeeccCCCCCCCCe---EEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEE-
Q 015511 105 IGYAYDPILRKWYGIELPCIETSNW---FIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSV- 180 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~p~~~~~~~---~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~- 180 (405)
....||+.+++|..++....++..+ .....+|.|++.++.....+++|||.|++|..+++++..| ..+. +...
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R-~~~s--~~~~~ 296 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR-GYQS--SATMS 296 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC-SSCE--EEECT
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccc-cccc--eEEec
Confidence 4568999999998875332333322 3344689999998865568999999999999999887655 2222 2222
Q ss_pred eCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccc----ccccccc---------------------------
Q 015511 181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSW----KEVLTGW--------------------------- 229 (405)
Q Consensus 181 ~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~----~~~~~~~--------------------------- 229 (405)
+. +|+++|+...... ....+++||..+++|+... .+++...
T Consensus 297 dg-----~iyv~GG~~~~~~---~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~ 368 (656)
T 1k3i_A 297 DG-----RVFTIGGSWSGGV---FEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS 368 (656)
T ss_dssp TS-----CEEEECCCCCSSS---CCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS
T ss_pred CC-----eEEEEeCcccCCc---ccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCc
Confidence 22 7888887321111 1357899999999998752 1111100
Q ss_pred -----------------------------cCCCccEE---ECcEEEeeEEecCCCCCCCc---cEEEEEECCCCcchhhh
Q 015511 230 -----------------------------RAGDESII---CDGVLYFLIYATGGGAPENR---HGLISFNLSSRSSHALL 274 (405)
Q Consensus 230 -----------------------------~~~~~~v~---~~g~iy~l~~~~~~~~~~~~---~~i~~fD~~~~~w~~~~ 274 (405)
+....+++ .+|+||++++..+....... ..+..||+.+++|..+.
T Consensus 369 ~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 448 (656)
T 1k3i_A 369 TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA 448 (656)
T ss_dssp SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC
T ss_pred cceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc
Confidence 00112232 38999999864321111111 26889999999997421
Q ss_pred cccccccCCccccCceEEe-CCcEEEEEcccccc---ccCccceEEEEEEeCceeEEEeccCh
Q 015511 275 IKSFIPVPCALTCGRLMNL-KEKLVMVGGIGKQD---RPDIIKGIGIWVLNGKEWQEVARMPH 333 (405)
Q Consensus 275 ~~~~~~~p~~~~~~~l~~~-~G~L~~v~~~~~~~---~~~~~~~~~vw~l~~~~W~~v~~i~~ 333 (405)
.-++|..+....++.. +|+||++++..... .......+++|+++.++|+.+..++.
T Consensus 449 ---~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~ 508 (656)
T 1k3i_A 449 ---SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSI 508 (656)
T ss_dssp ---TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSS
T ss_pred ---cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCC
Confidence 1266766666666666 99999999854211 11235678999999999999887764
No 18
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.42 E-value=1.3e-11 Score=124.92 Aligned_cols=209 Identities=11% Similarity=0.049 Sum_probs=140.2
Q ss_pred eeEEecCCCCeeeeccCC------CCCCCCeEEEec--CceEEEEeCCC-----CceEEEEeCcccceeeccCCCCCCCC
Q 015511 105 IGYAYDPILRKWYGIELP------CIETSNWFIASS--YGLVCFMDNDS-----RSELYVCNPISKSWKKLEEPPGLKFS 171 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~p------~~~~~~~~~~s~--~Gll~~~~~~~-----~~~~~v~NP~T~~~~~lP~~~~~~~~ 171 (405)
....||+..++|..++++ ..++..+..+.. +|.|++.++.. .+.++++||.|++|..++++|.++..
T Consensus 413 ~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~ 492 (695)
T 2zwa_A 413 EILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR 492 (695)
T ss_dssp CEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS
T ss_pred cEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc
Confidence 467899999999988732 233444556666 89899887632 25799999999999999988865522
Q ss_pred ccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccc-ccccccCCCccEEEC---cEEEeeEE
Q 015511 172 DYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKE-VLTGWRAGDESIICD---GVLYFLIY 247 (405)
Q Consensus 172 ~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~-~~~~~~~~~~~v~~~---g~iy~l~~ 247 (405)
+.++.+ .+. +|+++||.... . .+++||..+++|+..... .++..+..+.+++++ |+||++|+
T Consensus 493 -h~~~~~-~~~-----~iyv~GG~~~~------~-~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG 558 (695)
T 2zwa_A 493 -HSACSL-PDG-----NVLILGGVTEG------P-AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGG 558 (695)
T ss_dssp -CEEEEC-TTS-----CEEEECCBCSS------C-SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECC
T ss_pred -ceEEEE-cCC-----EEEEECCCCCC------C-CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECC
Confidence 221211 122 68888875321 1 789999999999987531 123334555656766 99999986
Q ss_pred ecCCCCCCCccEEEEEECCCCc------chhhhccccccc-CCccccCceEEeC-CcEEEEEccccccccCccceEEEEE
Q 015511 248 ATGGGAPENRHGLISFNLSSRS------SHALLIKSFIPV-PCALTCGRLMNLK-EKLVMVGGIGKQDRPDIIKGIGIWV 319 (405)
Q Consensus 248 ~~~~~~~~~~~~i~~fD~~~~~------w~~~~~~~~~~~-p~~~~~~~l~~~~-G~L~~v~~~~~~~~~~~~~~~~vw~ 319 (405)
.... .......+.+||+.+++ |+.+ .++ +..+....++..+ |+||+++|............+.+|+
T Consensus 559 ~~~~-~~~~~~~v~~yd~~~~~w~~~~~W~~~-----~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 559 GFMD-QTTVSDKAIIFKYDAENATEPITVIKK-----LQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp BCTT-SSCBCCEEEEEEECTTCSSCCEEEEEE-----EECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred cCCC-CCeeeCcEEEEEccCCccccceEEEEc-----CCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 5311 11334689999999999 5532 222 2344555677888 9999999864322112356788998
Q ss_pred EeCceeEEEeccChh
Q 015511 320 LNGKEWQEVARMPHK 334 (405)
Q Consensus 320 l~~~~W~~v~~i~~~ 334 (405)
++.++|+. ..+|..
T Consensus 633 ~~t~~W~~-~~~p~~ 646 (695)
T 2zwa_A 633 PLSETLTS-IPISRR 646 (695)
T ss_dssp TTTTEEEE-CCCCHH
T ss_pred CCCCeEEE-eecccc
Confidence 88999994 355654
No 19
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.10 E-value=6.4e-11 Score=77.00 Aligned_cols=43 Identities=28% Similarity=0.534 Sum_probs=38.7
Q ss_pred ccCCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChhhh
Q 015511 40 SVDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFL 82 (405)
Q Consensus 40 ~~~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~F~ 82 (405)
..+..||+|++.+||++||.+++.++++|||+|+.++.++.|.
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW 49 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 49 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHH
Confidence 3466999999999999999999999999999999999998764
No 20
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.00 E-value=8.2e-07 Score=84.68 Aligned_cols=43 Identities=21% Similarity=0.458 Sum_probs=38.5
Q ss_pred cCCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChhhhh
Q 015511 41 VDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLW 83 (405)
Q Consensus 41 ~~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~F~~ 83 (405)
+...||+|++..||+.|++++|.++..|||+|+.++.++.+.+
T Consensus 18 ~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~ 60 (445)
T 2ovr_B 18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWR 60 (445)
T ss_dssp TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHH
T ss_pred hhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhh
Confidence 3558999999999999999999999999999999998876544
No 21
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.96 E-value=3.2e-10 Score=100.32 Aligned_cols=47 Identities=32% Similarity=0.492 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHhcCChhhhH-HHhhcchhhHhhhcChhhhhhhccc
Q 015511 42 DLILPDDLLERILAYLPIASIF-RAGCVCRRWHEIVSSRRFLWNFSNV 88 (405)
Q Consensus 42 ~~~LP~dll~~Il~~Lp~~~l~-r~r~VcK~W~~~i~~~~F~~~~~~~ 88 (405)
...||+|||.+||++||+++|+ |+++|||+|+.++.++.|.+.+...
T Consensus 51 ~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~ 98 (297)
T 2e31_A 51 LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQ 98 (297)
T ss_dssp TTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhc
Confidence 4589999999999999999999 9999999999999999998887654
No 22
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.86 E-value=2.9e-06 Score=81.15 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcC-hh
Q 015511 42 DLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSS-RR 80 (405)
Q Consensus 42 ~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~-~~ 80 (405)
...||+||+.+||+.|++++|+++..|||.|+.++.+ +.
T Consensus 15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~ 54 (464)
T 3v7d_B 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTS 54 (464)
T ss_dssp HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHH
T ss_pred hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHH
Confidence 3479999999999999999999999999999999998 53
No 23
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.71 E-value=1.8e-06 Score=82.09 Aligned_cols=38 Identities=34% Similarity=0.620 Sum_probs=35.1
Q ss_pred CCCCHH----HHHHHHhcCChhhhHHHhhcchhhHhhhcChh
Q 015511 43 LILPDD----LLERILAYLPIASIFRAGCVCRRWHEIVSSRR 80 (405)
Q Consensus 43 ~~LP~d----ll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~ 80 (405)
+.||+| |+..||+.|++++|.++..|||+|+.++.++.
T Consensus 12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~ 53 (435)
T 1p22_A 12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGM 53 (435)
T ss_dssp HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTT
T ss_pred HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChH
Confidence 369999 99999999999999999999999999998764
No 24
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.99 E-value=2.1e-06 Score=75.05 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=41.6
Q ss_pred ccCCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChhhhhhhcc
Q 015511 40 SVDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSN 87 (405)
Q Consensus 40 ~~~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~F~~~~~~ 87 (405)
+.+..||+|++..||+.|+++||+++.+|||+|+.+++++..-+.+..
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~ 50 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLL 50 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHH
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHh
Confidence 344589999999999999999999999999999999999976554433
No 25
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.57 E-value=3.5e-05 Score=70.38 Aligned_cols=42 Identities=29% Similarity=0.552 Sum_probs=38.2
Q ss_pred ccCCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChhh
Q 015511 40 SVDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRF 81 (405)
Q Consensus 40 ~~~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~F 81 (405)
..|..||+|++.+||.+|+.+++.+++.|||+|+.++.++..
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~ 48 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence 347799999999999999999999999999999999987653
No 26
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.94 E-value=0.00038 Score=68.79 Aligned_cols=36 Identities=25% Similarity=0.651 Sum_probs=29.5
Q ss_pred ccCCCCCHHHHHHHHhcCC-hhhhHHHhhcchhhHhh
Q 015511 40 SVDLILPDDLLERILAYLP-IASIFRAGCVCRRWHEI 75 (405)
Q Consensus 40 ~~~~~LP~dll~~Il~~Lp-~~~l~r~r~VcK~W~~~ 75 (405)
..|+.||+|++.+||++|| .+++.+++.|||+|+.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 3577899999999999999 99999999999999988
No 27
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.60 E-value=0.2 Score=42.85 Aligned_cols=183 Identities=15% Similarity=0.076 Sum_probs=100.1
Q ss_pred EEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCC
Q 015511 177 SLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPEN 256 (405)
Q Consensus 177 ~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~ 256 (405)
++.+++. .++...+.. + ...+.++|..+++=.... +++. .......+..++.+|.+....
T Consensus 25 GL~~~~~----~LyestG~~--g-----~S~v~~vD~~tgkv~~~~-~l~~-~~fgeGi~~~~~~ly~ltw~~------- 84 (243)
T 3mbr_X 25 GLFYLRG----HLYESTGET--G-----RSSVRKVDLETGRILQRA-EVPP-PYFGAGIVAWRDRLIQLTWRN------- 84 (243)
T ss_dssp EEEEETT----EEEEEECCT--T-----SCEEEEEETTTCCEEEEE-ECCT-TCCEEEEEEETTEEEEEESSS-------
T ss_pred cEEEECC----EEEEECCCC--C-----CceEEEEECCCCCEEEEE-eCCC-CcceeEEEEeCCEEEEEEeeC-------
Confidence 6666652 466544321 0 247899999887543321 2211 112223456699999997543
Q ss_pred ccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHH
Q 015511 257 RHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFF 336 (405)
Q Consensus 257 ~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~ 336 (405)
..+.+||+.+.+-. ..++.+ .....|..-+++|++..+. . .|+.+|...-+.+.+++-..
T Consensus 85 -~~v~v~D~~tl~~~-----~ti~~~--~~Gwglt~dg~~L~vSdgs---------~--~l~~iDp~t~~~~~~I~V~~- 144 (243)
T 3mbr_X 85 -HEGFVYDLATLTPR-----ARFRYP--GEGWALTSDDSHLYMSDGT---------A--VIRKLDPDTLQQVGSIKVTA- 144 (243)
T ss_dssp -SEEEEEETTTTEEE-----EEEECS--SCCCEEEECSSCEEEECSS---------S--EEEEECTTTCCEEEEEECEE-
T ss_pred -CEEEEEECCcCcEE-----EEEeCC--CCceEEeeCCCEEEEECCC---------C--eEEEEeCCCCeEEEEEEEcc-
Confidence 58999999887632 123333 2334455555678877641 2 35555654433444433110
Q ss_pred hccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEccCCC-CCC------CCcccceeeeeecee
Q 015511 337 QGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCP-VTK------RFPLQLFTGFCFEPR 400 (405)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~~p-~~~------~~~~~~~~~~~~~p~ 400 (405)
..+.- ..+-.....++.||........+.+.|+++++....-++. +.+ ....+.++|+||.|.
T Consensus 145 ~g~~~-~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~ 214 (243)
T 3mbr_X 145 GGRPL-DNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE 214 (243)
T ss_dssp TTEEC-CCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT
T ss_pred CCccc-ccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC
Confidence 00000 0011122237789988766789999999999875532221 111 113457899999884
No 28
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.56 E-value=0.4 Score=43.02 Aligned_cols=230 Identities=7% Similarity=0.002 Sum_probs=120.2
Q ss_pred CeeEEecCCCCeeeecc----CC-CCCCCCeEEEecCceEEEEeCCCCceEEEEeCcccce-eeccCCCCCCCCccceeE
Q 015511 104 PIGYAYDPILRKWYGIE----LP-CIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSW-KKLEEPPGLKFSDYSALS 177 (405)
Q Consensus 104 ~~~~~~d~~~~~w~~~~----~p-~~~~~~~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~-~~lP~~~~~~~~~~~~~~ 177 (405)
.....+|+.+++....- .. .+...-.-+.-.++.+++... ....+.++|+.|++. ..++.... . ..
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~-~~~~v~viD~~t~~~~~~i~~~~~-----p--~~ 88 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVN-NSHVIFAIDINTFKEVGRITGFTS-----P--RY 88 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEG-GGTEEEEEETTTCCEEEEEECCSS-----E--EE
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEc-CCCEEEEEECcccEEEEEcCCCCC-----C--cE
Confidence 45678899887764311 00 011111223335677777654 247899999999887 44643211 1 23
Q ss_pred EEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccc-cccccccc-ccCCCccEEECcEEEeeEEecCCCCCC
Q 015511 178 LSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVT-SWKEVLTG-WRAGDESIICDGVLYFLIYATGGGAPE 255 (405)
Q Consensus 178 ~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~-~~~~~~~~-~~~~~~~v~~~g~iy~l~~~~~~~~~~ 255 (405)
+..++. . ++++.... ...+.++|..+++-.. +..+.... .......++.++.+|+....
T Consensus 89 i~~~~~--g-~lyv~~~~---------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~------- 149 (328)
T 3dsm_A 89 IHFLSD--E-KAYVTQIW---------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS------- 149 (328)
T ss_dssp EEEEET--T-EEEEEEBS---------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT-------
T ss_pred EEEeCC--C-eEEEEECC---------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC-------
Confidence 334333 2 57765421 1378889987765321 11110000 00122333468899887531
Q ss_pred CccEEEEEECCCCcchhhhcccccccCCccccCceE-EeCCcEEEEEcccccccc--CccceEEEEEEeCceeEEEeccC
Q 015511 256 NRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEKLVMVGGIGKQDRP--DIIKGIGIWVLNGKEWQEVARMP 332 (405)
Q Consensus 256 ~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~L~~v~~~~~~~~~--~~~~~~~vw~l~~~~W~~v~~i~ 332 (405)
....|..+|+.+.+... .++... ....+. .-+|+|+++......... .....+.+++.+..+....-.++
T Consensus 150 ~~~~v~viD~~t~~~~~-----~i~~g~--~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~ 222 (328)
T 3dsm_A 150 YQNRILKIDTETDKVVD-----ELTIGI--QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK 222 (328)
T ss_dssp TCCEEEEEETTTTEEEE-----EEECSS--CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC
T ss_pred CCCEEEEEECCCCeEEE-----EEEcCC--CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC
Confidence 12489999999877432 222221 112233 346898887642110000 00134666665555544333333
Q ss_pred hhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEE
Q 015511 333 HKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWR 376 (405)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~ 376 (405)
.. ....-+++...++.+|+... .+.+||+++++..
T Consensus 223 ~g------~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 223 LG------DWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVP 257 (328)
T ss_dssp TT------CCCEEEEECTTSCEEEEESS---SEEEEETTCSSCC
T ss_pred CC------CCceeEEEecCCCEEEEEcc---EEEEEECCCCcee
Confidence 21 11223455567899999753 7999999998863
No 29
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.46 E-value=0.34 Score=43.44 Aligned_cols=232 Identities=10% Similarity=-0.023 Sum_probs=116.0
Q ss_pred CeeEEecCCCCee-eeccCCCCCCCCeEEEecCceEEEEeCCCCceEEEEeCccccee-eccCCCCC-CCCccceeEEEE
Q 015511 104 PIGYAYDPILRKW-YGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWK-KLEEPPGL-KFSDYSALSLSV 180 (405)
Q Consensus 104 ~~~~~~d~~~~~w-~~~~~p~~~~~~~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~-~lP~~~~~-~~~~~~~~~~~~ 180 (405)
.....+|+.+++. ..++ .......+..+.+|.+++.+. ....+.++|+.|++.. .++..... .......+++
T Consensus 64 ~~v~viD~~t~~~~~~i~--~~~~p~~i~~~~~g~lyv~~~-~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-- 138 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRIT--GFTSPRYIHFLSDEKAYVTQI-WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-- 138 (328)
T ss_dssp TEEEEEETTTCCEEEEEE--CCSSEEEEEEEETTEEEEEEB-SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--
T ss_pred CEEEEEECcccEEEEEcC--CCCCCcEEEEeCCCeEEEEEC-CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--
Confidence 3566788877654 2232 222223345556788888763 2478999999998765 34422100 0001112233
Q ss_pred eCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCC--CCC
Q 015511 181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGA--PEN 256 (405)
Q Consensus 181 ~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~--~~~ 256 (405)
+.. ++++..... ...+.++|..+++....- + ... .. ..+.+ +|.+|+......... ...
T Consensus 139 ~~~----~lyv~~~~~--------~~~v~viD~~t~~~~~~i-~--~g~-~p-~~i~~~~dG~l~v~~~~~~~~~~~~~~ 201 (328)
T 3dsm_A 139 YGK----YVYVNCWSY--------QNRILKIDTETDKVVDEL-T--IGI-QP-TSLVMDKYNKMWTITDGGYEGSPYGYE 201 (328)
T ss_dssp ETT----EEEEEECTT--------CCEEEEEETTTTEEEEEE-E--CSS-CB-CCCEECTTSEEEEEBCCBCTTCSSCBC
T ss_pred ECC----EEEEEcCCC--------CCEEEEEECCCCeEEEEE-E--cCC-Cc-cceEEcCCCCEEEEECCCccCCccccC
Confidence 321 566653210 137889998887653321 1 111 11 12333 689888763210000 000
Q ss_pred ccEEEEEECCCCcchhhhcccccccCCccccCceEEe--CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChh
Q 015511 257 RHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNL--KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHK 334 (405)
Q Consensus 257 ~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~--~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~ 334 (405)
...|..+|+.+.+... .+..|.......++.. ++.||++.. .+.+|+++..+......++..
T Consensus 202 ~~~v~~id~~t~~v~~-----~~~~~~g~~p~~la~~~d~~~lyv~~~-----------~v~~~d~~t~~~~~~~~~~~~ 265 (328)
T 3dsm_A 202 APSLYRIDAETFTVEK-----QFKFKLGDWPSEVQLNGTRDTLYWINN-----------DIWRMPVEADRVPVRPFLEFR 265 (328)
T ss_dssp CCEEEEEETTTTEEEE-----EEECCTTCCCEEEEECTTSCEEEEESS-----------SEEEEETTCSSCCSSCSBCCC
T ss_pred CceEEEEECCCCeEEE-----EEecCCCCCceeEEEecCCCEEEEEcc-----------EEEEEECCCCceeeeeeecCC
Confidence 2589999999877431 2334322222235544 345565432 255555554443211111110
Q ss_pred HHhccCCCCceeEEeeCCCEEEEEe----CCCCeEEEEECCCCcEEEc
Q 015511 335 FFQGFGEFDDVFASSGTDDLIYIQS----YGAPSLLVYDMNLKQWRWS 378 (405)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~Yd~~~~~w~~l 378 (405)
+....-+++...++.||+.. .....+.+||++.+.-..+
T Consensus 266 -----~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i 308 (328)
T 3dsm_A 266 -----DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEF 308 (328)
T ss_dssp -----SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEE
T ss_pred -----CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEE
Confidence 11112234444688899987 4567899999995444444
No 30
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.21 E-value=0.32 Score=42.04 Aligned_cols=164 Identities=11% Similarity=0.058 Sum_probs=91.2
Q ss_pred eEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcc
Q 015511 206 LSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCAL 285 (405)
Q Consensus 206 ~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~ 285 (405)
..+.++|..+++=... .++... ......+..++.+|.+.... ..+.+||+++.+-. ..++.+.
T Consensus 65 S~v~~vD~~Tgkv~~~-~~l~~~-~FgeGit~~g~~ly~ltw~~--------~~v~v~D~~t~~~~-----~ti~~~~-- 127 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQ-IELGKR-YFGEGISDWKDKIVGLTWKN--------GLGFVWNIRNLRQV-----RSFNYDG-- 127 (262)
T ss_dssp EEEEEECTTTCCEEEE-EECCTT-CCEEEEEEETTEEEEEESSS--------SEEEEEETTTCCEE-----EEEECSS--
T ss_pred ceEEEEECCCCcEEEE-EecCCc-cceeEEEEeCCEEEEEEeeC--------CEEEEEECccCcEE-----EEEECCC--
Confidence 4789999988764332 122111 11122355689999997543 58999999887732 1233332
Q ss_pred ccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHH-hccCCCCceeEEeeCCCEEEEEeCCCCe
Q 015511 286 TCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFF-QGFGEFDDVFASSGTDDLIYIQSYGAPS 364 (405)
Q Consensus 286 ~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 364 (405)
....+..-+++|++..+. . .++.+|...-+.+.+++-..- ..+. .-.-+.+ .++.||+.......
T Consensus 128 eG~glt~dg~~L~~SdGs---------~--~i~~iDp~T~~v~~~I~V~~~g~~~~-~lNELe~--~~G~lyan~w~~~~ 193 (262)
T 3nol_A 128 EGWGLTHNDQYLIMSDGT---------P--VLRFLDPESLTPVRTITVTAHGEELP-ELNELEW--VDGEIFANVWQTNK 193 (262)
T ss_dssp CCCCEEECSSCEEECCSS---------S--EEEEECTTTCSEEEEEECEETTEECC-CEEEEEE--ETTEEEEEETTSSE
T ss_pred CceEEecCCCEEEEECCC---------C--eEEEEcCCCCeEEEEEEeccCCcccc-ccceeEE--ECCEEEEEEccCCe
Confidence 333455445577766541 2 356666544344444332100 0000 0000222 25689988767789
Q ss_pred EEEEECCCCcEEEccCCC-CCC-----CCcccceeeeeecee
Q 015511 365 LLVYDMNLKQWRWSHKCP-VTK-----RFPLQLFTGFCFEPR 400 (405)
Q Consensus 365 ~~~Yd~~~~~w~~l~~~p-~~~-----~~~~~~~~~~~~~p~ 400 (405)
+.+.|+++++....-+.+ +.+ ....+.++|+||.|.
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~ 235 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE 235 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC
Confidence 999999999876543332 111 112457899999884
No 31
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.11 E-value=0.0021 Score=63.37 Aligned_cols=34 Identities=32% Similarity=0.645 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHhcC-ChhhhHHHhhcchhhHhhh
Q 015511 43 LILPDDLLERILAYL-PIASIFRAGCVCRRWHEIV 76 (405)
Q Consensus 43 ~~LP~dll~~Il~~L-p~~~l~r~r~VcK~W~~~i 76 (405)
+.||+|++.+||++| +.+++.+++.|||+|+.+.
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence 469999999999999 8999999999999999884
No 32
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.96 E-value=0.8 Score=40.53 Aligned_cols=245 Identities=8% Similarity=-0.003 Sum_probs=118.0
Q ss_pred CeeEEecCCCCeeeeccCCCCCCCCe-EEEecCceEEEEeCCCCc--eEEEEeCcccceeeccCCCCCCCCccceeEEEE
Q 015511 104 PIGYAYDPILRKWYGIELPCIETSNW-FIASSYGLVCFMDNDSRS--ELYVCNPISKSWKKLEEPPGLKFSDYSALSLSV 180 (405)
Q Consensus 104 ~~~~~~d~~~~~w~~~~~p~~~~~~~-~~~s~~Gll~~~~~~~~~--~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~ 180 (405)
.....+|+..++.....+........ +.-+.+|-.+........ .+.++|+.+++....-+.. . ....+.+
T Consensus 62 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~----~~~~~~~ 135 (331)
T 3u4y_A 62 QTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--Y----DAVGIAI 135 (331)
T ss_dssp CEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC--T----TEEEEEE
T ss_pred CeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC--C----CccceEE
Confidence 35566777665531111111112223 444444443334332223 8999999998775532211 1 1235556
Q ss_pred eCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCC-cccccccccccccCCCccEEE--CcE-EEeeEEecCCCCCCC
Q 015511 181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMM-WVTSWKEVLTGWRAGDESIIC--DGV-LYFLIYATGGGAPEN 256 (405)
Q Consensus 181 ~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~-W~~~~~~~~~~~~~~~~~v~~--~g~-iy~l~~~~~~~~~~~ 256 (405)
++..+ + +++..... ...+.+|+...+. -......... .......+.+ +|. +|+.+..
T Consensus 136 spdg~-~-l~~~~~~~--------~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~-------- 196 (331)
T 3u4y_A 136 SPNGN-G-LILIDRSS--------ANTVRRFKIDADGVLFDTGQEFIS-GGTRPFNITFTPDGNFAFVANLI-------- 196 (331)
T ss_dssp CTTSS-C-EEEEEETT--------TTEEEEEEECTTCCEEEEEEEEEC-SSSSEEEEEECTTSSEEEEEETT--------
T ss_pred CCCCC-E-EEEEecCC--------CceEEEEEECCCCcEeecCCcccc-CCCCccceEECCCCCEEEEEeCC--------
Confidence 66543 3 44433211 1126677654322 1110000000 0001112222 565 6665422
Q ss_pred ccEEEEEECCCCcchhhhcccccccCCccccCceE-EeCCc-EEEEEccccccccCccceEEEEEEeCceeEEEeccChh
Q 015511 257 RHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEK-LVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHK 334 (405)
Q Consensus 257 ~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~ 334 (405)
...+..||+.+.+..+ .....+.......+. .-+|+ ||+.... ...+.+|+++..+.+.+..++..
T Consensus 197 ~~~v~v~d~~~~~~~~----~~~~~~~~~~~~~~~~spdg~~l~v~~~~--------~~~i~~~d~~~~~~~~~~~~~~~ 264 (331)
T 3u4y_A 197 GNSIGILETQNPENIT----LLNAVGTNNLPGTIVVSRDGSTVYVLTES--------TVDVFNFNQLSGTLSFVKSFGHG 264 (331)
T ss_dssp TTEEEEEECSSTTSCE----EEEEEECSSCCCCEEECTTSSEEEEECSS--------EEEEEEEETTTTEEEEEEEEECC
T ss_pred CCeEEEEECCCCcccc----eeeeccCCCCCceEEECCCCCEEEEEEcC--------CCEEEEEECCCCceeeecccccc
Confidence 2479999998766310 011112211122333 33577 5544431 24588888887766555544322
Q ss_pred HH--hccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEccCCCCCC
Q 015511 335 FF--QGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTK 385 (405)
Q Consensus 335 ~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~~p~~~ 385 (405)
+. .........+++...|+.+|+.......+.+||++++.-..+......+
T Consensus 265 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~g 317 (331)
T 3u4y_A 265 LLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVAGIEANG 317 (331)
T ss_dssp CCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECTTCCCBS
T ss_pred cccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccceecccccC
Confidence 10 0000000124566788899998766779999999999888776655433
No 33
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=95.91 E-value=0.2 Score=43.43 Aligned_cols=163 Identities=14% Similarity=0.059 Sum_probs=89.3
Q ss_pred EEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccc
Q 015511 207 SIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALT 286 (405)
Q Consensus 207 ~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~ 286 (405)
.+.++|..+++=.... ++. .......+..++.+|.+.... ..+.+||+++.+-. ..++.+ ..
T Consensus 76 ~v~~iD~~Tgkv~~~~--l~~-~~FgeGit~~g~~Ly~ltw~~--------~~v~V~D~~Tl~~~-----~ti~~~--~e 137 (268)
T 3nok_A 76 TLRQLSLESAQPVWME--RLG-NIFAEGLASDGERLYQLTWTE--------GLLFTWSGMPPQRE-----RTTRYS--GE 137 (268)
T ss_dssp EEEECCSSCSSCSEEE--ECT-TCCEEEEEECSSCEEEEESSS--------CEEEEEETTTTEEE-----EEEECS--SC
T ss_pred EEEEEECCCCcEEeEE--CCC-CcceeEEEEeCCEEEEEEccC--------CEEEEEECCcCcEE-----EEEeCC--Cc
Confidence 4888898877643321 111 111122345589999997543 58999999987732 123333 23
Q ss_pred cCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEE
Q 015511 287 CGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLL 366 (405)
Q Consensus 287 ~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 366 (405)
...|..-+++||+..+. . .++.+|...-+.+.+++-.. .... -..+-.....++.||+.......+.
T Consensus 138 GwGLt~Dg~~L~vSdGs---------~--~l~~iDp~T~~v~~~I~V~~-~g~~-v~~lNeLe~~dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 138 GWGLCYWNGKLVRSDGG---------T--MLTFHEPDGFALVGAVQVKL-RGQP-VELINELECANGVIYANIWHSSDVL 204 (268)
T ss_dssp CCCEEEETTEEEEECSS---------S--EEEEECTTTCCEEEEEECEE-TTEE-CCCEEEEEEETTEEEEEETTCSEEE
T ss_pred eeEEecCCCEEEEECCC---------C--EEEEEcCCCCeEEEEEEeCC-CCcc-cccccccEEeCCEEEEEECCCCeEE
Confidence 34556556677777641 2 45555654333444433110 0000 0001111122668998876678999
Q ss_pred EEECCCCcEEEccCCC-CC------CCCcccceeeeeecee
Q 015511 367 VYDMNLKQWRWSHKCP-VT------KRFPLQLFTGFCFEPR 400 (405)
Q Consensus 367 ~Yd~~~~~w~~l~~~p-~~------~~~~~~~~~~~~~~p~ 400 (405)
+.|+++++....-+.. .. .....+.++|+||.|.
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~ 245 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG 245 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence 9999999875532221 10 1113467899999984
No 34
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.87 E-value=0.87 Score=40.26 Aligned_cols=77 Identities=9% Similarity=0.015 Sum_probs=49.2
Q ss_pred ceEEEEEEe--CceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEE--ECCCCcEEEccCCCCCCCCc
Q 015511 313 KGIGIWVLN--GKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVY--DMNLKQWRWSHKCPVTKRFP 388 (405)
Q Consensus 313 ~~~~vw~l~--~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Y--d~~~~~w~~l~~~p~~~~~~ 388 (405)
..+.+|+++ .+.++.+..++... ....+++...|+.+|+....+..+.+| |.++++++.+...+... .
T Consensus 253 ~~i~v~d~~~~~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~-~- 324 (343)
T 1ri6_A 253 SLITVFSVSEDGSVLSKEGFQPTET------QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQ-G- 324 (343)
T ss_dssp TEEEEEEECTTSCCEEEEEEEECSS------SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSS-S-
T ss_pred CEEEEEEEcCCCCceEEeeeecCCC------ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCC-C-
Confidence 469999998 45677666554210 112345556788888876556778888 77788898887655421 1
Q ss_pred ccceeeeeecee
Q 015511 389 LQLFTGFCFEPR 400 (405)
Q Consensus 389 ~~~~~~~~~~p~ 400 (405)
-.+++|.|.
T Consensus 325 ---p~~i~~~~~ 333 (343)
T 1ri6_A 325 ---PMWVVVNAH 333 (343)
T ss_dssp ---CCEEEEEEE
T ss_pred ---CeeEEEEcc
Confidence 236666664
No 35
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.40 E-value=1.4 Score=39.35 Aligned_cols=241 Identities=10% Similarity=0.094 Sum_probs=115.5
Q ss_pred eEEecCCCCeeeeccCC-CCCCCCeEEEecCceEEEEeC-CCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCC
Q 015511 106 GYAYDPILRKWYGIELP-CIETSNWFIASSYGLVCFMDN-DSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRV 183 (405)
Q Consensus 106 ~~~~d~~~~~w~~~~~p-~~~~~~~~~~s~~Gll~~~~~-~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~ 183 (405)
.+.+|...++...+... .......+.-+.+|-|+.... .....+++|+..+++...+....... . ....+.+++.
T Consensus 20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~-~--~p~~~a~spd 96 (347)
T 3hfq_A 20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG-T--PPAYVAVDEA 96 (347)
T ss_dssp EEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEES-C--CCSEEEEETT
T ss_pred EEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCC-C--CCEEEEECCC
Confidence 45567766665543321 112223345566776555443 22468999999888766654321100 1 1124445554
Q ss_pred CCcEEEEEEeeeccCCCccccceEEEEEeCC-CCCccccccccccc-----cc---CCCccEEE--CcEEEeeEEecCCC
Q 015511 184 SHRYTVSIVKSKQVTGNFFQWELSIHIYDSD-TMMWVTSWKEVLTG-----WR---AGDESIIC--DGVLYFLIYATGGG 252 (405)
Q Consensus 184 ~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~-~~~W~~~~~~~~~~-----~~---~~~~~v~~--~g~iy~l~~~~~~~ 252 (405)
. ++ +++.... ...+.+|+.. ++....... .... .+ .....+.+ +|.+|+....
T Consensus 97 g-~~-l~~~~~~---------~~~v~v~~~~~~g~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~---- 160 (347)
T 3hfq_A 97 R-QL-VYSANYH---------KGTAEVMKIAADGALTLTDT-VQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG---- 160 (347)
T ss_dssp T-TE-EEEEETT---------TTEEEEEEECTTSCEEEEEE-EECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT----
T ss_pred C-CE-EEEEeCC---------CCEEEEEEeCCCCCeeecce-eecCCCCCCccccCCCceEEEECCCCcEEEEeCC----
Confidence 3 22 4443311 1256777763 333322211 0000 00 00112333 6776654421
Q ss_pred CCCCccEEEEEECC-CCcchhhhcccccccCCccccCceE-EeCCc-EEEEEccccccccCccceEEEEEEeC--ceeEE
Q 015511 253 APENRHGLISFNLS-SRSSHALLIKSFIPVPCALTCGRLM-NLKEK-LVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQE 327 (405)
Q Consensus 253 ~~~~~~~i~~fD~~-~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~ 327 (405)
...+..||+. +.+.... .....+.......+. .-+|+ ||+.... ...+.+|+++. ++++.
T Consensus 161 ----~~~v~~~~~~~~g~~~~~---~~~~~~~g~~p~~~~~spdg~~l~v~~~~--------~~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 161 ----SDKVYVYNVSDAGQLSEQ---SVLTMEAGFGPRHLVFSPDGQYAFLAGEL--------SSQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp ----TTEEEEEEECTTSCEEEE---EEEECCTTCCEEEEEECTTSSEEEEEETT--------TTEEEEEEEETTTTEEEE
T ss_pred ----CCEEEEEEECCCCcEEEe---eeEEcCCCCCCceEEECCCCCEEEEEeCC--------CCEEEEEEecCCCCceEE
Confidence 2478889987 4433211 011112111111233 33576 6655532 24689999995 56655
Q ss_pred Eecc---ChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECC-CCcEEEccCCC
Q 015511 328 VARM---PHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMN-LKQWRWSHKCP 382 (405)
Q Consensus 328 v~~i---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~-~~~w~~l~~~p 382 (405)
+..+ +..... . ....-+++...|+.+|+.......+.+||++ +++++.+...+
T Consensus 226 ~~~~~~~~~~~~~-~-~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~ 282 (347)
T 3hfq_A 226 LGIVKTIPADYTA-H-NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS 282 (347)
T ss_dssp EEEEESSCTTCCS-C-CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE
T ss_pred eeeeeecCCCCCC-C-CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe
Confidence 4433 321000 0 0011234556788898877667789999997 34666655443
No 36
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.29 E-value=1.6 Score=39.52 Aligned_cols=221 Identities=10% Similarity=0.045 Sum_probs=108.8
Q ss_pred cCCCCeeEEecCCCCeeee-ccCCCCCCCCeEEEecCc-eEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeE
Q 015511 100 SSDEPIGYAYDPILRKWYG-IELPCIETSNWFIASSYG-LVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALS 177 (405)
Q Consensus 100 ~~~~~~~~~~d~~~~~w~~-~~~p~~~~~~~~~~s~~G-ll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~ 177 (405)
.........+|...++... +... .....+.-+.+| .+++.+. ....+.+||+.+++....-.... ....
T Consensus 8 ~~~d~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~-~d~~i~v~d~~~~~~~~~~~~~~------~v~~ 78 (391)
T 1l0q_A 8 NSESDNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANA-HSNDVSIIDTATNNVIATVPAGS------SPQG 78 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEG-GGTEEEEEETTTTEEEEEEECSS------SEEE
T ss_pred cCCCCEEEEEECCCCeEEEEeecC--CCcceEEECCCCCEEEEECC-CCCeEEEEECCCCeEEEEEECCC------Cccc
Confidence 3344456677776665332 1211 111123334455 4444432 24789999999987755422211 2234
Q ss_pred EEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE--CcE-EEeeEEecCCCCC
Q 015511 178 LSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGV-LYFLIYATGGGAP 254 (405)
Q Consensus 178 ~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~-iy~l~~~~~~~~~ 254 (405)
+.+++.. . .+++.+.. ...+.+||..++.-..... . ......+.+ +|. +|+.+..
T Consensus 79 ~~~spdg-~-~l~~~~~~---------~~~v~v~d~~~~~~~~~~~----~-~~~~~~~~~s~dg~~l~~~~~~------ 136 (391)
T 1l0q_A 79 VAVSPDG-K-QVYVTNMA---------SSTLSVIDTTSNTVAGTVK----T-GKSPLGLALSPDGKKLYVTNNG------ 136 (391)
T ss_dssp EEECTTS-S-EEEEEETT---------TTEEEEEETTTTEEEEEEE----C-SSSEEEEEECTTSSEEEEEETT------
T ss_pred eEECCCC-C-EEEEEECC---------CCEEEEEECCCCeEEEEEe----C-CCCcceEEECCCCCEEEEEeCC------
Confidence 5555533 2 24443321 1378899987765422110 0 011122333 444 5555421
Q ss_pred CCccEEEEEECCCCcchhhhcccccccCCccccCceE-EeCCc-EEEEEccccccccCccceEEEEEEeCceeEEEeccC
Q 015511 255 ENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEK-LVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMP 332 (405)
Q Consensus 255 ~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~ 332 (405)
...|..+|+.+.+... .+.... ....+. .-+|+ |++.+.. ...+.+|++...+-.......
T Consensus 137 --~~~v~~~d~~~~~~~~-----~~~~~~--~~~~~~~~~dg~~l~~~~~~--------~~~v~~~d~~~~~~~~~~~~~ 199 (391)
T 1l0q_A 137 --DKTVSVINTVTKAVIN-----TVSVGR--SPKGIAVTPDGTKVYVANFD--------SMSISVIDTVTNSVIDTVKVE 199 (391)
T ss_dssp --TTEEEEEETTTTEEEE-----EEECCS--SEEEEEECTTSSEEEEEETT--------TTEEEEEETTTTEEEEEEECS
T ss_pred --CCEEEEEECCCCcEEE-----EEecCC--CcceEEECCCCCEEEEEeCC--------CCEEEEEECCCCeEEEEEecC
Confidence 2479999998876431 121111 111222 22454 4444432 245889988765433322211
Q ss_pred hhHHhccCCCCceeEEeeCCCEEEEEeC--CCCeEEEEECCCCcEE
Q 015511 333 HKFFQGFGEFDDVFASSGTDDLIYIQSY--GAPSLLVYDMNLKQWR 376 (405)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~Yd~~~~~w~ 376 (405)
.. ...+++...++.+++... ....+.+||+++++-.
T Consensus 200 ~~--------~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~ 237 (391)
T 1l0q_A 200 AA--------PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237 (391)
T ss_dssp SE--------EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred CC--------ccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence 10 012234456778887764 4678999999887543
No 37
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.29 E-value=1.1 Score=39.66 Aligned_cols=239 Identities=8% Similarity=0.012 Sum_probs=116.8
Q ss_pred CEEEEEecCCCCeeEEecCCCCeeeec-cCCCCCCCCeEEEecCc-eEEEEeCCCCceEEEEeCcccce-ee-ccCCCCC
Q 015511 93 PWYFMFTSSDEPIGYAYDPILRKWYGI-ELPCIETSNWFIASSYG-LVCFMDNDSRSELYVCNPISKSW-KK-LEEPPGL 168 (405)
Q Consensus 93 p~l~~~~~~~~~~~~~~d~~~~~w~~~-~~p~~~~~~~~~~s~~G-ll~~~~~~~~~~~~v~NP~T~~~-~~-lP~~~~~ 168 (405)
..+++. .........+|+..++.... ..+..+ . .+.-+.+| .+++... ....++++|+.+++. .. +....
T Consensus 10 ~~~~v~-~~~~~~v~~~d~~~~~~~~~~~~~~~~-~-~~~~s~dg~~l~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~-- 83 (331)
T 3u4y_A 10 NFGIVV-EQHLRRISFFSTDTLEILNQITLGYDF-V-DTAITSDCSNVVVTSD-FCQTLVQIETQLEPPKVVAIQEGQ-- 83 (331)
T ss_dssp CEEEEE-EGGGTEEEEEETTTCCEEEEEECCCCE-E-EEEECSSSCEEEEEES-TTCEEEEEECSSSSCEEEEEEECS--
T ss_pred CEEEEE-ecCCCeEEEEeCcccceeeeEEccCCc-c-eEEEcCCCCEEEEEeC-CCCeEEEEECCCCceeEEecccCC--
Confidence 344432 33334667788877665332 322111 1 34444455 4555543 246899999999875 22 22211
Q ss_pred CCCccceeE-EEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE--CcE-EEe
Q 015511 169 KFSDYSALS-LSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGV-LYF 244 (405)
Q Consensus 169 ~~~~~~~~~-~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~-iy~ 244 (405)
.... +.+++.. .+ ++ +.... +. ...+.+|+..++.-.... ... .....+.+ +|. +|+
T Consensus 84 -----~~~~~~~~s~dg-~~-l~-~~~~~--~~----~~~i~v~d~~~~~~~~~~---~~~--~~~~~~~~spdg~~l~~ 144 (331)
T 3u4y_A 84 -----SSMADVDITPDD-QF-AV-TVTGL--NH----PFNMQSYSFLKNKFISTI---PIP--YDAVGIAISPNGNGLIL 144 (331)
T ss_dssp -----SCCCCEEECTTS-SE-EE-ECCCS--SS----SCEEEEEETTTTEEEEEE---ECC--TTEEEEEECTTSSCEEE
T ss_pred -----CCccceEECCCC-CE-EE-EecCC--CC----cccEEEEECCCCCeEEEE---ECC--CCccceEECCCCCEEEE
Confidence 1112 4455532 23 33 32211 00 127889998776543211 110 01122232 554 666
Q ss_pred eEEecCCCCCCCccE-EEEEECCCCcchhhhcccccccCCccccCceE-EeCCc-EEEEEccccccccCccceEEEEEEe
Q 015511 245 LIYATGGGAPENRHG-LISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEK-LVMVGGIGKQDRPDIIKGIGIWVLN 321 (405)
Q Consensus 245 l~~~~~~~~~~~~~~-i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~ 321 (405)
..... .. +..||+..+.-. ........+.......+. .-+|+ |++.... ...+.+|+++
T Consensus 145 ~~~~~--------~~~i~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~--------~~~v~v~d~~ 206 (331)
T 3u4y_A 145 IDRSS--------ANTVRRFKIDADGVL--FDTGQEFISGGTRPFNITFTPDGNFAFVANLI--------GNSIGILETQ 206 (331)
T ss_dssp EEETT--------TTEEEEEEECTTCCE--EEEEEEEECSSSSEEEEEECTTSSEEEEEETT--------TTEEEEEECS
T ss_pred EecCC--------CceEEEEEECCCCcE--eecCCccccCCCCccceEECCCCCEEEEEeCC--------CCeEEEEECC
Confidence 65321 24 777776543210 000000011111111232 23566 6665532 2459999988
Q ss_pred Ccee-EEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEccC
Q 015511 322 GKEW-QEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHK 380 (405)
Q Consensus 322 ~~~W-~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~ 380 (405)
..+. ..+..++.. ....-+++...|+.+|+.......+.+||+++++.+.+..
T Consensus 207 ~~~~~~~~~~~~~~------~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~ 260 (331)
T 3u4y_A 207 NPENITLLNAVGTN------NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKS 260 (331)
T ss_dssp STTSCEEEEEEECS------SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred CCcccceeeeccCC------CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecc
Confidence 6554 223333321 0112345566788898876656689999999998866553
No 38
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=95.27 E-value=1.7 Score=39.49 Aligned_cols=214 Identities=11% Similarity=0.011 Sum_probs=109.5
Q ss_pred CeeEEecCCCC--eeeeccCCCC-------CCCC-eEEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCcc
Q 015511 104 PIGYAYDPILR--KWYGIELPCI-------ETSN-WFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDY 173 (405)
Q Consensus 104 ~~~~~~d~~~~--~w~~~~~p~~-------~~~~-~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~ 173 (405)
....++|..++ .|.. .++.. .... ......+|.|++... ...++.+|+.|++..---..+... .
T Consensus 63 g~v~a~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--~g~l~a~d~~tG~~~W~~~~~~~~---~ 136 (376)
T 3q7m_A 63 GLVKALNADDGKEIWSV-SLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE--KAQVYALNTSDGTVAWQTKVAGEA---L 136 (376)
T ss_dssp SEEEEEETTTCCEEEEE-ECCC---CCSCCCCCEEEEEEEETTEEEEEET--TSEEEEEETTTCCEEEEEECSSCC---C
T ss_pred CeEEEEEccCCceeeee-cCccccccccccCcccccCceEeCCEEEEEcC--CCEEEEEECCCCCEEEEEeCCCce---E
Confidence 36778888655 3532 22111 1111 124456788887654 378999999998643211111100 1
Q ss_pred ceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCC--cccccccccccccCCCccEEECcEEEeeEEecCC
Q 015511 174 SALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMM--WVTSWKEVLTGWRAGDESIICDGVLYFLIYATGG 251 (405)
Q Consensus 174 ~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~--W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~ 251 (405)
....+ .+ . .|++... .-.+..||..+++ |+...............++..+|.+|+-..
T Consensus 137 ~~p~~-~~----~-~v~v~~~----------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~---- 196 (376)
T 3q7m_A 137 SRPVV-SD----G-LVLIHTS----------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGD---- 196 (376)
T ss_dssp SCCEE-ET----T-EEEEECT----------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCT----
T ss_pred cCCEE-EC----C-EEEEEcC----------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcC----
Confidence 11111 11 1 4444321 1267888876654 876432111111223456777888877432
Q ss_pred CCCCCccEEEEEECCCCc--chhhhcccccccCCcc--------ccCceEEeCCcEEEEEccccccccCccceEEEEEEe
Q 015511 252 GAPENRHGLISFNLSSRS--SHALLIKSFIPVPCAL--------TCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLN 321 (405)
Q Consensus 252 ~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~~--------~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~ 321 (405)
...+.+||+.+.+ |+. ....|... .....+..+|.||+.+.. ..+..++++
T Consensus 197 -----~g~l~~~d~~tG~~~w~~-----~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~---------g~l~~~d~~ 257 (376)
T 3q7m_A 197 -----NGRVSAVLMEQGQMIWQQ-----RISQATGSTEIDRLSDVDTTPVVVNGVVFALAYN---------GNLTALDLR 257 (376)
T ss_dssp -----TTEEEEEETTTCCEEEEE-----ECCC-----------CCCCCCEEETTEEEEECTT---------SCEEEEETT
T ss_pred -----CCEEEEEECCCCcEEEEE-----ecccCCCCcccccccccCCCcEEECCEEEEEecC---------cEEEEEECC
Confidence 2479999997655 431 11212110 112345567888876531 235556555
Q ss_pred Cc--eeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEE
Q 015511 322 GK--EWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWR 376 (405)
Q Consensus 322 ~~--~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~ 376 (405)
++ .|..- ++ ........++.||+... ...+++||+++++-.
T Consensus 258 tG~~~w~~~--~~-----------~~~~~~~~~~~l~~~~~-~g~l~~~d~~tG~~~ 300 (376)
T 3q7m_A 258 SGQIMWKRE--LG-----------SVNDFIVDGNRIYLVDQ-NDRVMALTIDGGVTL 300 (376)
T ss_dssp TCCEEEEEC--CC-----------CEEEEEEETTEEEEEET-TCCEEEEETTTCCEE
T ss_pred CCcEEeecc--CC-----------CCCCceEECCEEEEEcC-CCeEEEEECCCCcEE
Confidence 43 57642 11 11122335788888763 468999999988643
No 39
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=95.01 E-value=2.1 Score=39.35 Aligned_cols=204 Identities=11% Similarity=0.108 Sum_probs=99.5
Q ss_pred cCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeC
Q 015511 134 SYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDS 213 (405)
Q Consensus 134 ~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s 213 (405)
.+|.+++.+.. ...+.+||+.+++...................+..++.. ++++.++. ...+.+|+.
T Consensus 132 ~~~~~~~~~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~s~~~---------d~~v~~~d~ 198 (433)
T 3bws_A 132 DNTRLAIPLLE-DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN---ELWVSQMQ---------ANAVHVFDL 198 (433)
T ss_dssp SSSEEEEEBTT-SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT---EEEEEEGG---------GTEEEEEET
T ss_pred CCCeEEEEeCC-CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC---EEEEEECC---------CCEEEEEEC
Confidence 36777666542 367999999998877643321111111112233443322 34444432 237889998
Q ss_pred CCCCcccccccccccccCCCccEEE--Cc-EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCce
Q 015511 214 DTMMWVTSWKEVLTGWRAGDESIIC--DG-VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRL 290 (405)
Q Consensus 214 ~~~~W~~~~~~~~~~~~~~~~~v~~--~g-~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l 290 (405)
.+++-...-. ........+.+ +| .+|+.+.. ...|..||+.+.+... .+.... ....+
T Consensus 199 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~--------~~~i~~~d~~~~~~~~-----~~~~~~--~~~~~ 259 (433)
T 3bws_A 199 KTLAYKATVD----LTGKWSKILLYDPIRDLVYCSNWI--------SEDISVIDRKTKLEIR-----KTDKIG--LPRGL 259 (433)
T ss_dssp TTCCEEEEEE----CSSSSEEEEEEETTTTEEEEEETT--------TTEEEEEETTTTEEEE-----ECCCCS--EEEEE
T ss_pred CCceEEEEEc----CCCCCeeEEEEcCCCCEEEEEecC--------CCcEEEEECCCCcEEE-----EecCCC--CceEE
Confidence 7654322110 00011112222 34 45555422 2479999998776321 122111 11122
Q ss_pred EE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEE
Q 015511 291 MN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYD 369 (405)
Q Consensus 291 ~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd 369 (405)
.. -+|+.++++.............+.+|++...+-......+.. ...+++...++.+|+....+..+.+||
T Consensus 260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~g~~l~~~~~~~~~v~v~d 331 (433)
T 3bws_A 260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGN--------KRHIVSGNTENKIYVSDMCCSKIEVYD 331 (433)
T ss_dssp EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEEC--------EEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCC--------cceEEECCCCCEEEEEecCCCEEEEEE
Confidence 22 256555554432110000124688898876543222111110 012334556778888766778999999
Q ss_pred CCCCcEEE
Q 015511 370 MNLKQWRW 377 (405)
Q Consensus 370 ~~~~~w~~ 377 (405)
+++++...
T Consensus 332 ~~~~~~~~ 339 (433)
T 3bws_A 332 LKEKKVQK 339 (433)
T ss_dssp TTTTEEEE
T ss_pred CCCCcEEE
Confidence 99876543
No 40
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=94.97 E-value=1.4 Score=40.08 Aligned_cols=188 Identities=13% Similarity=0.101 Sum_probs=97.3
Q ss_pred eEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCC
Q 015511 137 LVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTM 216 (405)
Q Consensus 137 ll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~ 216 (405)
.+++.+. ....+.+||..+++....-... . ....+.+++.. . .+++.++. ...+.+||..++
T Consensus 3 ~l~vs~~-~d~~v~v~d~~~~~~~~~~~~~----~--~~~~~~~s~dg-~-~l~~~~~~---------d~~i~v~d~~~~ 64 (391)
T 1l0q_A 3 FAYIANS-ESDNISVIDVTSNKVTATIPVG----S--NPMGAVISPDG-T-KVYVANAH---------SNDVSIIDTATN 64 (391)
T ss_dssp EEEEEET-TTTEEEEEETTTTEEEEEEECS----S--SEEEEEECTTS-S-EEEEEEGG---------GTEEEEEETTTT
T ss_pred EEEEEcC-CCCEEEEEECCCCeEEEEeecC----C--CcceEEECCCC-C-EEEEECCC---------CCeEEEEECCCC
Confidence 3444443 3478999999988765432211 1 12344454432 2 34444321 237889998776
Q ss_pred CcccccccccccccCCCccEEE--CcE-EEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEE-
Q 015511 217 MWVTSWKEVLTGWRAGDESIIC--DGV-LYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMN- 292 (405)
Q Consensus 217 ~W~~~~~~~~~~~~~~~~~v~~--~g~-iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~- 292 (405)
+-...- ... .....+.+ +|. +|+.+.. ...|..||+.+.+... .+.... ....+..
T Consensus 65 ~~~~~~---~~~--~~v~~~~~spdg~~l~~~~~~--------~~~v~v~d~~~~~~~~-----~~~~~~--~~~~~~~s 124 (391)
T 1l0q_A 65 NVIATV---PAG--SSPQGVAVSPDGKQVYVTNMA--------SSTLSVIDTTSNTVAG-----TVKTGK--SPLGLALS 124 (391)
T ss_dssp EEEEEE---ECS--SSEEEEEECTTSSEEEEEETT--------TTEEEEEETTTTEEEE-----EEECSS--SEEEEEEC
T ss_pred eEEEEE---ECC--CCccceEECCCCCEEEEEECC--------CCEEEEEECCCCeEEE-----EEeCCC--CcceEEEC
Confidence 543211 000 01122323 344 5554421 2479999998876321 122111 1112322
Q ss_pred eCCc-EEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECC
Q 015511 293 LKEK-LVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMN 371 (405)
Q Consensus 293 ~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~ 371 (405)
.+|+ |++.+.. ...+.+|++...+.......... ...+.+...++.+|+....+..+.+||++
T Consensus 125 ~dg~~l~~~~~~--------~~~v~~~d~~~~~~~~~~~~~~~--------~~~~~~~~dg~~l~~~~~~~~~v~~~d~~ 188 (391)
T 1l0q_A 125 PDGKKLYVTNNG--------DKTVSVINTVTKAVINTVSVGRS--------PKGIAVTPDGTKVYVANFDSMSISVIDTV 188 (391)
T ss_dssp TTSSEEEEEETT--------TTEEEEEETTTTEEEEEEECCSS--------EEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CCCCEEEEEeCC--------CCEEEEEECCCCcEEEEEecCCC--------cceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 3465 4455432 24689998887655443322211 11234455677888876667789999999
Q ss_pred CCcEEEc
Q 015511 372 LKQWRWS 378 (405)
Q Consensus 372 ~~~w~~l 378 (405)
+++....
T Consensus 189 ~~~~~~~ 195 (391)
T 1l0q_A 189 TNSVIDT 195 (391)
T ss_dssp TTEEEEE
T ss_pred CCeEEEE
Confidence 8865443
No 41
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=94.49 E-value=2.2 Score=37.01 Aligned_cols=186 Identities=8% Similarity=-0.002 Sum_probs=95.9
Q ss_pred eEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCC
Q 015511 176 LSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPE 255 (405)
Q Consensus 176 ~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~ 255 (405)
-++.+++.. .+|+..+.. . ...+.++|..+++=... .++.. .......+..++.+|++...
T Consensus 24 ~Gl~~~~dg---~Lyvstg~~--~-----~s~v~~iD~~tg~v~~~-i~l~~-~~fgeGi~~~g~~lyv~t~~------- 84 (266)
T 2iwa_A 24 QGLVYAEND---TLFESTGLY--G-----RSSVRQVALQTGKVENI-HKMDD-SYFGEGLTLLNEKLYQVVWL------- 84 (266)
T ss_dssp EEEEECSTT---EEEEEECST--T-----TCEEEEEETTTCCEEEE-EECCT-TCCEEEEEEETTEEEEEETT-------
T ss_pred ccEEEeCCC---eEEEECCCC--C-----CCEEEEEECCCCCEEEE-EecCC-CcceEEEEEeCCEEEEEEec-------
Confidence 366676642 567654321 0 24889999988763221 11111 11111234457899999743
Q ss_pred CccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhH
Q 015511 256 NRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKF 335 (405)
Q Consensus 256 ~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~ 335 (405)
...+.+||+.+.+-. ..++.+ ......+..-+++||+..+ .. .++.+|...-+.+.+++-..
T Consensus 85 -~~~v~viD~~t~~v~-----~~i~~g-~~~g~glt~Dg~~l~vs~g---------s~--~l~viD~~t~~v~~~I~Vg~ 146 (266)
T 2iwa_A 85 -KNIGFIYDRRTLSNI-----KNFTHQ-MKDGWGLATDGKILYGSDG---------TS--ILYEIDPHTFKLIKKHNVKY 146 (266)
T ss_dssp -CSEEEEEETTTTEEE-----EEEECC-SSSCCEEEECSSSEEEECS---------SS--EEEEECTTTCCEEEEEECEE
T ss_pred -CCEEEEEECCCCcEE-----EEEECC-CCCeEEEEECCCEEEEECC---------CC--eEEEEECCCCcEEEEEEECC
Confidence 258999999876521 123333 1222234444457776542 12 45555654444444443110
Q ss_pred HhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEccCCC-C------CCCCcccceeeeeecee
Q 015511 336 FQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCP-V------TKRFPLQLFTGFCFEPR 400 (405)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~~p-~------~~~~~~~~~~~~~~~p~ 400 (405)
-.... ..+..+...++.+|+.......+.+.|+++++....-+.+ . ..........|++|.|.
T Consensus 147 ~~~p~--~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~ 216 (266)
T 2iwa_A 147 NGHRV--IRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQE 216 (266)
T ss_dssp TTEEC--CCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETT
T ss_pred CCccc--ccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCC
Confidence 00000 0111221125689988766789999999999764422221 0 00111245678888874
No 42
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=94.39 E-value=0.62 Score=39.79 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=73.2
Q ss_pred EEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceE
Q 015511 236 IICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGI 315 (405)
Q Consensus 236 v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~ 315 (405)
.+.++.+|.-++.. ....|..+|+++.+-. ..+++|.....-.+...+++||+++-.. ..+
T Consensus 27 ~~~~~~LyestG~~------g~S~v~~vD~~tgkv~-----~~~~l~~~~fgeGi~~~~~~ly~ltw~~--------~~v 87 (243)
T 3mbr_X 27 FYLRGHLYESTGET------GRSSVRKVDLETGRIL-----QRAEVPPPYFGAGIVAWRDRLIQLTWRN--------HEG 87 (243)
T ss_dssp EEETTEEEEEECCT------TSCEEEEEETTTCCEE-----EEEECCTTCCEEEEEEETTEEEEEESSS--------SEE
T ss_pred EEECCEEEEECCCC------CCceEEEEECCCCCEE-----EEEeCCCCcceeEEEEeCCEEEEEEeeC--------CEE
Confidence 34578888876432 2458999999998743 2356666555556778899999997421 334
Q ss_pred EEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEE
Q 015511 316 GIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWR 376 (405)
Q Consensus 316 ~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~ 376 (405)
.|+ |...-+.+.+++... ...++...++.+|+.. ....+.++|+++.+..
T Consensus 88 ~v~--D~~tl~~~~ti~~~~--------~Gwglt~dg~~L~vSd-gs~~l~~iDp~t~~~~ 137 (243)
T 3mbr_X 88 FVY--DLATLTPRARFRYPG--------EGWALTSDDSHLYMSD-GTAVIRKLDPDTLQQV 137 (243)
T ss_dssp EEE--ETTTTEEEEEEECSS--------CCCEEEECSSCEEEEC-SSSEEEEECTTTCCEE
T ss_pred EEE--ECCcCcEEEEEeCCC--------CceEEeeCCCEEEEEC-CCCeEEEEeCCCCeEE
Confidence 444 555555665555321 1246666788888886 4789999999997553
No 43
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=93.63 E-value=3.9 Score=36.81 Aligned_cols=211 Identities=10% Similarity=0.089 Sum_probs=91.0
Q ss_pred ecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015511 133 SSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD 212 (405)
Q Consensus 133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~ 212 (405)
+.+|.++.... .+.+.|||..+++........... ..-....+.+.+.. . .++.++. .-.+.+||
T Consensus 103 s~d~~~l~~s~--dg~v~lWd~~~~~~~~~~~~~~~~-h~~~V~~v~~spdg-~--~l~sgs~---------dg~v~iwd 167 (357)
T 4g56_B 103 VSEKGILVASD--SGAVELWEILEKESLLVNKFAKYE-HDDIVKTLSVFSDG-T--QAVSGGK---------DFSVKVWD 167 (357)
T ss_dssp ETTTEEEEEET--TSCEEEC--------CCCCEEECC-CSSCEEEEEECSSS-S--EEEEEET---------TSCEEEEE
T ss_pred cCCCCEEEEEC--CCEEEEeeccccceeEEEeeccCC-CCCCEEEEEECCCC-C--EEEEEeC---------CCeEEEEE
Confidence 44565555544 367999999988765443221100 11122344454432 2 2333332 12688898
Q ss_pred CCCCCcccccccccccccCCCccEEE--CcE-EEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCc
Q 015511 213 SDTMMWVTSWKEVLTGWRAGDESIIC--DGV-LYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGR 289 (405)
Q Consensus 213 s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~-iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~ 289 (405)
..++.-... ..........+.+ ++. +++.+.. ...|..+|+.+.+-.. .+..........
T Consensus 168 ~~~~~~~~~----~~~h~~~v~~v~~s~~~~~~~~s~~~--------dg~v~~wd~~~~~~~~-----~~~~~~~~~~v~ 230 (357)
T 4g56_B 168 LSQKAVLKS----YNAHSSEVNCVAACPGKDTIFLSCGE--------DGRILLWDTRKPKPAT-----RIDFCASDTIPT 230 (357)
T ss_dssp TTTTEEEEE----ECCCSSCEEEEEECTTCSSCEEEEET--------TSCEEECCTTSSSCBC-----BCCCTTCCSCEE
T ss_pred CCCCcEEEE----EcCCCCCEEEEEEccCCCceeeeecc--------CCceEEEECCCCceee-----eeeecccccccc
Confidence 776543221 1111111122222 222 3333322 1368888887765221 111111111111
Q ss_pred -eEEe--CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeE--EeeCCCEEEEEeCCCCe
Q 015511 290 -LMNL--KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFA--SSGTDDLIYIQSYGAPS 364 (405)
Q Consensus 290 -l~~~--~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~ 364 (405)
+... ++++++++..+ ..+.+|++...+=....... ...+.+ +...++.+++....+..
T Consensus 231 ~v~~sp~~~~~la~g~~d--------~~i~~wd~~~~~~~~~~~~~---------~~~v~~l~~sp~~~~~lasgs~D~~ 293 (357)
T 4g56_B 231 SVTWHPEKDDTFACGDET--------GNVSLVNIKNPDSAQTSAVH---------SQNITGLAYSYHSSPFLASISEDCT 293 (357)
T ss_dssp EEEECTTSTTEEEEEESS--------SCEEEEESSCGGGCEEECCC---------SSCEEEEEECSSSSCCEEEEETTSC
T ss_pred chhhhhcccceEEEeecc--------cceeEEECCCCcEeEEEecc---------ceeEEEEEEcCCCCCEEEEEeCCCE
Confidence 2221 45676665432 45899988754311111111 112222 23345444444445678
Q ss_pred EEEEECCCCcEEEccCCCCCCCCcccceeeeeece
Q 015511 365 LLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEP 399 (405)
Q Consensus 365 ~~~Yd~~~~~w~~l~~~p~~~~~~~~~~~~~~~~p 399 (405)
+.+||+++++....- .|. ....+++|.|
T Consensus 294 i~iwd~~~~~~~~~~----~H~---~~V~~vafsP 321 (357)
T 4g56_B 294 VAVLDADFSEVFRDL----SHR---DFVTGVAWSP 321 (357)
T ss_dssp EEEECTTSCEEEEEC----CCS---SCEEEEEECS
T ss_pred EEEEECCCCcEeEEC----CCC---CCEEEEEEeC
Confidence 999999988654431 232 2356777776
No 44
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=93.48 E-value=4.2 Score=36.71 Aligned_cols=196 Identities=11% Similarity=0.066 Sum_probs=94.0
Q ss_pred cCceEEEEeCCCCceEEEEeCccccee--eccCCCCC--CC-CccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEE
Q 015511 134 SYGLVCFMDNDSRSELYVCNPISKSWK--KLEEPPGL--KF-SDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSI 208 (405)
Q Consensus 134 ~~Gll~~~~~~~~~~~~v~NP~T~~~~--~lP~~~~~--~~-~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~ 208 (405)
.+|.|++... ...++.+|+.|++.. .-...... .. ..........+.. +|++... .-.+
T Consensus 52 ~~~~v~~~~~--~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~v~~~----------~g~l 115 (376)
T 3q7m_A 52 ADNVVYAADR--AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGG----HVYIGSE----------KAQV 115 (376)
T ss_dssp ETTEEEEECT--TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETT----EEEEEET----------TSEE
T ss_pred ECCEEEEEcC--CCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCC----EEEEEcC----------CCEE
Confidence 4677776543 367888999887643 22111000 00 0011112222221 4554321 1267
Q ss_pred EEEeCCCC--CcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--chhhhcccccccCCc
Q 015511 209 HIYDSDTM--MWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SHALLIKSFIPVPCA 284 (405)
Q Consensus 209 ~vy~s~~~--~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~ 284 (405)
..+|..++ .|+..... .....++..+|.+|+-.. ...+.+||+.+.+ |+. . ...+..
T Consensus 116 ~a~d~~tG~~~W~~~~~~-----~~~~~p~~~~~~v~v~~~---------~g~l~~~d~~tG~~~W~~----~-~~~~~~ 176 (376)
T 3q7m_A 116 YALNTSDGTVAWQTKVAG-----EALSRPVVSDGLVLIHTS---------NGQLQALNEADGAVKWTV----N-LDMPSL 176 (376)
T ss_dssp EEEETTTCCEEEEEECSS-----CCCSCCEEETTEEEEECT---------TSEEEEEETTTCCEEEEE----E-CCC---
T ss_pred EEEECCCCCEEEEEeCCC-----ceEcCCEEECCEEEEEcC---------CCeEEEEECCCCcEEEEE----e-CCCCce
Confidence 88887655 47653211 112346777898887642 2479999997765 542 1 111110
Q ss_pred --cccCceEEeCCcEEEEEccccccccCccceEEEEEEeC--ceeEEEeccChhHH--hccCCCCceeEEeeCCCEEEEE
Q 015511 285 --LTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFF--QGFGEFDDVFASSGTDDLIYIQ 358 (405)
Q Consensus 285 --~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~--~~~~~~~~~~~~~~~~~~i~~~ 358 (405)
......+..+|.|++... ...+..+++++ ..|+.-...+.... ..+..... .....++.||+.
T Consensus 177 ~~~~~~~~~~~~~~v~~g~~---------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~v~~~ 245 (376)
T 3q7m_A 177 SLRGESAPTTAFGAAVVGGD---------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDT--TPVVVNGVVFAL 245 (376)
T ss_dssp --CCCCCCEEETTEEEECCT---------TTEEEEEETTTCCEEEEEECCC-----------CCCC--CCEEETTEEEEE
T ss_pred eecCCCCcEEECCEEEEEcC---------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCC--CcEEECCEEEEE
Confidence 011234455777665332 12355555543 35776433322110 00000000 011246788886
Q ss_pred eCCCCeEEEEECCCCcEE
Q 015511 359 SYGAPSLLVYDMNLKQWR 376 (405)
Q Consensus 359 ~~~~~~~~~Yd~~~~~w~ 376 (405)
. ....+.++|+++++-.
T Consensus 246 ~-~~g~l~~~d~~tG~~~ 262 (376)
T 3q7m_A 246 A-YNGNLTALDLRSGQIM 262 (376)
T ss_dssp C-TTSCEEEEETTTCCEE
T ss_pred e-cCcEEEEEECCCCcEE
Confidence 5 3568999999888543
No 45
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=93.14 E-value=5.3 Score=36.90 Aligned_cols=136 Identities=14% Similarity=0.148 Sum_probs=62.3
Q ss_pred EEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccc
Q 015511 207 SIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALT 286 (405)
Q Consensus 207 ~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~ 286 (405)
.+.+||..++.=... ..........+..++...+.+... ..|..||+.+.+-. ........
T Consensus 277 ~i~vwd~~~~~~~~~----~~~~~~~v~~~~~~~~~l~~g~~d--------g~i~iwd~~~~~~~-------~~~~~h~~ 337 (435)
T 1p22_A 277 TIKVWNTSTCEFVRT----LNGHKRGIACLQYRDRLVVSGSSD--------NTIRLWDIECGACL-------RVLEGHEE 337 (435)
T ss_dssp EEEEEETTTCCEEEE----EECCSSCEEEEEEETTEEEEEETT--------SCEEEEETTTCCEE-------EEECCCSS
T ss_pred eEEEEECCcCcEEEE----EcCCCCcEEEEEeCCCEEEEEeCC--------CeEEEEECCCCCEE-------EEEeCCcC
Confidence 788999876532111 111111112334455555555332 47999999876521 11111111
Q ss_pred cCceEEeCCcEEEEEccccccccCccceEEEEEEeCce-------eEEEeccChhHHhccCCCCceeEEeeCCCEEEEEe
Q 015511 287 CGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKE-------WQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQS 359 (405)
Q Consensus 287 ~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~-------W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 359 (405)
....+..+|+++++++.+ ..+.+|++.... ...+..+. +....+.++...++.+.. .
T Consensus 338 ~v~~~~~~~~~l~sg~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~~~~l~s-~ 401 (435)
T 1p22_A 338 LVRCIRFDNKRIVSGAYD--------GKIKVWDLVAALDPRAPAGTLCLRTLV-------EHSGRVFRLQFDEFQIVS-S 401 (435)
T ss_dssp CEEEEECCSSEEEEEETT--------SCEEEEEHHHHTSTTSCTTTTEEEEEC-------CCSSCCCCEEECSSCEEE-C
T ss_pred cEEEEEecCCEEEEEeCC--------CcEEEEECCCCCCccccccchheeecc-------CCCCCeEEEEeCCCEEEE-E
Confidence 122234477777666532 459999987421 11111111 011123333335555444 3
Q ss_pred CCCCeEEEEECCCCcEEE
Q 015511 360 YGAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 360 ~~~~~~~~Yd~~~~~w~~ 377 (405)
..+..+.+||+.++.-..
T Consensus 402 s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 402 SHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp CSSSEEEEEC--------
T ss_pred eCCCEEEEEECCCCCCcc
Confidence 457799999998875433
No 46
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=92.87 E-value=1.1 Score=38.62 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=70.8
Q ss_pred EECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEE
Q 015511 237 ICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIG 316 (405)
Q Consensus 237 ~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~ 316 (405)
+.+|.+|.-++.. ....|..+|+++.+-. ..++++.....-.+...+++||++.-.. ..+.
T Consensus 50 ~~~~~LyestG~~------g~S~v~~vD~~Tgkv~-----~~~~l~~~~FgeGit~~g~~ly~ltw~~--------~~v~ 110 (262)
T 3nol_A 50 YRNGYFYESTGLN------GRSSIRKVDIESGKTL-----QQIELGKRYFGEGISDWKDKIVGLTWKN--------GLGF 110 (262)
T ss_dssp EETTEEEEEEEET------TEEEEEEECTTTCCEE-----EEEECCTTCCEEEEEEETTEEEEEESSS--------SEEE
T ss_pred EECCEEEEECCCC------CCceEEEEECCCCcEE-----EEEecCCccceeEEEEeCCEEEEEEeeC--------CEEE
Confidence 4478888887643 2358999999998743 2345555444445777899999997522 3355
Q ss_pred EEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEE
Q 015511 317 IWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWR 376 (405)
Q Consensus 317 vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~ 376 (405)
++ |...-+.+.+++... ...++...++.+|+.. ....+.++|+++.+..
T Consensus 111 v~--D~~t~~~~~ti~~~~--------eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~ 159 (262)
T 3nol_A 111 VW--NIRNLRQVRSFNYDG--------EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPV 159 (262)
T ss_dssp EE--ETTTCCEEEEEECSS--------CCCCEEECSSCEEECC-SSSEEEEECTTTCSEE
T ss_pred EE--ECccCcEEEEEECCC--------CceEEecCCCEEEEEC-CCCeEEEEcCCCCeEE
Confidence 55 444444555554321 1235556788888876 4678999999986543
No 47
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=92.72 E-value=5.7 Score=36.18 Aligned_cols=191 Identities=11% Similarity=0.009 Sum_probs=90.7
Q ss_pred CceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCC
Q 015511 135 YGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSD 214 (405)
Q Consensus 135 ~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~ 214 (405)
++.++..+. .+.+++||..+++...+-... . ......+.+.+. +.+ +++++. .-.+.+|+..
T Consensus 103 ~~~l~~~~~--d~~v~lw~~~~~~~~~~~~~~--~--~~~v~~v~~s~~-~~~--l~~~~~---------dg~i~iwd~~ 164 (401)
T 4aez_A 103 NLNVVAVAL--ERNVYVWNADSGSVSALAETD--E--STYVASVKWSHD-GSF--LSVGLG---------NGLVDIYDVE 164 (401)
T ss_dssp TTSEEEEEE--TTEEEEEETTTCCEEEEEECC--T--TCCEEEEEECTT-SSE--EEEEET---------TSCEEEEETT
T ss_pred CCCEEEEEC--CCeEEEeeCCCCcEeEeeecC--C--CCCEEEEEECCC-CCE--EEEECC---------CCeEEEEECc
Confidence 344444333 478999999999877654332 1 112234555553 233 333331 1268889887
Q ss_pred CCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc-CceEE-
Q 015511 215 TMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC-GRLMN- 292 (405)
Q Consensus 215 ~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l~~- 292 (405)
++.-... ..........+..++.+.+.+... ..+..+|+.+..-. .......... ..+..
T Consensus 165 ~~~~~~~----~~~~~~~v~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~------~~~~~~~~~~v~~~~~~ 226 (401)
T 4aez_A 165 SQTKLRT----MAGHQARVGCLSWNRHVLSSGSRS--------GAIHHHDVRIANHQ------IGTLQGHSSEVCGLAWR 226 (401)
T ss_dssp TCCEEEE----ECCCSSCEEEEEEETTEEEEEETT--------SEEEEEETTSSSCE------EEEEECCSSCEEEEEEC
T ss_pred CCeEEEE----ecCCCCceEEEEECCCEEEEEcCC--------CCEEEEecccCcce------eeEEcCCCCCeeEEEEc
Confidence 6643221 111111122344455555555332 47999999754311 1111111111 11222
Q ss_pred eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC--CCCeEEEEEC
Q 015511 293 LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY--GAPSLLVYDM 370 (405)
Q Consensus 293 ~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~Yd~ 370 (405)
-+|+++++++.+ ..+.+|++...+=.....-..... ..+++...++.+++... .+..+.+||+
T Consensus 227 ~~~~~l~s~~~d--------~~v~iwd~~~~~~~~~~~~~~~~v-------~~~~~~p~~~~ll~~~~gs~d~~i~i~d~ 291 (401)
T 4aez_A 227 SDGLQLASGGND--------NVVQIWDARSSIPKFTKTNHNAAV-------KAVAWCPWQSNLLATGGGTMDKQIHFWNA 291 (401)
T ss_dssp TTSSEEEEEETT--------SCEEEEETTCSSEEEEECCCSSCC-------CEEEECTTSTTEEEEECCTTTCEEEEEET
T ss_pred CCCCEEEEEeCC--------CeEEEccCCCCCccEEecCCcceE-------EEEEECCCCCCEEEEecCCCCCEEEEEEC
Confidence 256776666532 459999988643221111000000 11233333444444432 4667888888
Q ss_pred CCCcEE
Q 015511 371 NLKQWR 376 (405)
Q Consensus 371 ~~~~w~ 376 (405)
++++-.
T Consensus 292 ~~~~~~ 297 (401)
T 4aez_A 292 ATGARV 297 (401)
T ss_dssp TTCCEE
T ss_pred CCCCEE
Confidence 877543
No 48
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=92.72 E-value=5 Score=35.54 Aligned_cols=75 Identities=11% Similarity=0.240 Sum_probs=47.4
Q ss_pred eCCc-EEEEEccccccccCccceEEEEEEeC-ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEE--
Q 015511 293 LKEK-LVMVGGIGKQDRPDIIKGIGIWVLNG-KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVY-- 368 (405)
Q Consensus 293 ~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~-~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Y-- 368 (405)
-+|+ ||+.... ...+.+|+++. +.++.+..++.. +....-+++...|+.+|+.......+.+|
T Consensus 249 pdG~~l~v~~~~--------~~~v~v~~~~~~g~~~~~~~~~~~-----~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 249 HDGHFLYVSNRG--------YNTLAVFAVTADGHLTLIQQISTE-----GDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp TTSCEEEEEEET--------TTEEEEEEECGGGCEEEEEEEECS-----SSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEeCC--------CCEEEEEEECCCCcEEEeEEEecC-----CCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 4576 5555432 24699999984 466666554421 01112345567788899987666778888
Q ss_pred ECCCCcEEEccC
Q 015511 369 DMNLKQWRWSHK 380 (405)
Q Consensus 369 d~~~~~w~~l~~ 380 (405)
|.++++.+.+..
T Consensus 316 d~~tg~l~~~~~ 327 (347)
T 3hfq_A 316 DLTSGKLSLLQK 327 (347)
T ss_dssp CTTTCCEEEEEE
T ss_pred eCCCCeEEeccc
Confidence 778888887653
No 49
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=92.60 E-value=4.9 Score=35.07 Aligned_cols=198 Identities=11% Similarity=0.038 Sum_probs=92.9
Q ss_pred ecCceEEEEeCCCCceEEEEeCcccceee-ccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEE
Q 015511 133 SSYGLVCFMDNDSRSELYVCNPISKSWKK-LEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIY 211 (405)
Q Consensus 133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy 211 (405)
+.+|-++..+. .+.+.+||..+++... +....... .......+.+.+.. .+ +++++. .-.+.+|
T Consensus 60 ~~~~~~l~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~--l~~~~~---------d~~i~~~ 124 (337)
T 1gxr_A 60 SNPTRHVYTGG--KGCVKVWDISHPGNKSPVSQLDCLN-RDNYIRSCKLLPDG-CT--LIVGGE---------ASTLSIW 124 (337)
T ss_dssp CSSSSEEEEEC--BSEEEEEETTSTTCCSCSEEEECSC-TTSBEEEEEECTTS-SE--EEEEES---------SSEEEEE
T ss_pred ecCCcEEEEcC--CCeEEEEECCCCCceeeeecccccC-CCCcEEEEEEcCCC-CE--EEEEcC---------CCcEEEE
Confidence 34555544443 4788999988765322 11111000 11123345555532 22 333321 1378899
Q ss_pred eCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCc
Q 015511 212 DSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGR 289 (405)
Q Consensus 212 ~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~ 289 (405)
+..++....... ..........+.. +|...+.+... ..+..||+.+.+... .+..... ....
T Consensus 125 d~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~v~~~d~~~~~~~~-----~~~~~~~-~i~~ 188 (337)
T 1gxr_A 125 DLAAPTPRIKAE--LTSSAPACYALAISPDSKVCFSCCSD--------GNIAVWDLHNQTLVR-----QFQGHTD-GASC 188 (337)
T ss_dssp ECCCC--EEEEE--EECSSSCEEEEEECTTSSEEEEEETT--------SCEEEEETTTTEEEE-----EECCCSS-CEEE
T ss_pred ECCCCCcceeee--cccCCCceEEEEECCCCCEEEEEeCC--------CcEEEEeCCCCceee-----eeecccC-ceEE
Confidence 988776433211 1111111112222 45555554322 368899998765321 1111110 1111
Q ss_pred eEE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEE
Q 015511 290 LMN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVY 368 (405)
Q Consensus 290 l~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Y 368 (405)
+.. -+|++++++.. ...+.+|++...+-......+... ..+.+...++.+++.. .+..+.+|
T Consensus 189 ~~~~~~~~~l~~~~~--------dg~i~~~d~~~~~~~~~~~~~~~v--------~~~~~s~~~~~l~~~~-~~~~i~~~ 251 (337)
T 1gxr_A 189 IDISNDGTKLWTGGL--------DNTVRSWDLREGRQLQQHDFTSQI--------FSLGYCPTGEWLAVGM-ESSNVEVL 251 (337)
T ss_dssp EEECTTSSEEEEEET--------TSEEEEEETTTTEEEEEEECSSCE--------EEEEECTTSSEEEEEE-TTSCEEEE
T ss_pred EEECCCCCEEEEEec--------CCcEEEEECCCCceEeeecCCCce--------EEEEECCCCCEEEEEc-CCCcEEEE
Confidence 222 25666666543 245999988865433222221110 1123344566666654 45689999
Q ss_pred ECCCCcEEEc
Q 015511 369 DMNLKQWRWS 378 (405)
Q Consensus 369 d~~~~~w~~l 378 (405)
|+++++-..+
T Consensus 252 ~~~~~~~~~~ 261 (337)
T 1gxr_A 252 HVNKPDKYQL 261 (337)
T ss_dssp ETTSSCEEEE
T ss_pred ECCCCCeEEE
Confidence 9998875544
No 50
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=91.99 E-value=6.6 Score=35.18 Aligned_cols=210 Identities=10% Similarity=0.020 Sum_probs=95.8
Q ss_pred ecCceEEEEeCCCCceEEEEeCcccceeeccCCC-CCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEE
Q 015511 133 SSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPP-GLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIY 211 (405)
Q Consensus 133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~-~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy 211 (405)
+.++.++.... .+.+.|||..+++........ ..+. -....+.+.+.. . .++.++. ...+.+|
T Consensus 91 s~d~~l~~~s~--dg~v~lWd~~~~~~~~~~~~~~~~H~--~~V~~v~~spdg-~--~l~sgs~---------d~~i~iw 154 (344)
T 4gqb_B 91 VGERGILVASD--SGAVELWELDENETLIVSKFCKYEHD--DIVSTVSVLSSG-T--QAVSGSK---------DICIKVW 154 (344)
T ss_dssp ETTTEEEEEET--TSEEEEEEECTTSSCEEEEEEEECCS--SCEEEEEECTTS-S--EEEEEET---------TSCEEEE
T ss_pred eCCCeEEEEEC--CCEEEEEeccCCCceeEeeccccCCC--CCEEEEEECCCC-C--EEEEEeC---------CCeEEEE
Confidence 34566555443 478999999988765433211 0111 112344454433 2 3333332 1368889
Q ss_pred eCCCCCcccccccccccccCCCccEEE--Cc-EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccC
Q 015511 212 DSDTMMWVTSWKEVLTGWRAGDESIIC--DG-VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCG 288 (405)
Q Consensus 212 ~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g-~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~ 288 (405)
|..++.=... ..........+.+ ++ .+.+-+.. ...|..+|+.+.+-.. .+.........
T Consensus 155 d~~~~~~~~~----~~~h~~~V~~~~~~~~~~~~l~s~s~--------D~~v~iwd~~~~~~~~-----~~~~~~~~~~~ 217 (344)
T 4gqb_B 155 DLAQQVVLSS----YRAHAAQVTCVAASPHKDSVFLSCSE--------DNRILLWDTRCPKPAS-----QIGCSAPGYLP 217 (344)
T ss_dssp ETTTTEEEEE----ECCCSSCEEEEEECSSCTTEEEEEET--------TSCEEEEETTSSSCEE-----ECC----CCCE
T ss_pred ECCCCcEEEE----EcCcCCceEEEEecCCCCCceeeecc--------ccccccccccccceee-----eeecceeeccc
Confidence 8876532110 1111111112222 23 23333322 1368889998766221 11111111111
Q ss_pred -ceEE--eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEE--eeCCCEEEEEeCCCC
Q 015511 289 -RLMN--LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFAS--SGTDDLIYIQSYGAP 363 (405)
Q Consensus 289 -~l~~--~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~ 363 (405)
.+.. .++++++.+..+ ..+.+|++...+=.. .+. +....+.++ ...+..+++....+.
T Consensus 218 ~~~~~~p~~~~~l~sg~~d--------g~v~~wd~~~~~~~~--~~~-------~h~~~v~~v~fsp~g~~~lasgs~D~ 280 (344)
T 4gqb_B 218 TSLAWHPQQSEVFVFGDEN--------GTVSLVDTKSTSCVL--SSA-------VHSQCVTGLVFSPHSVPFLASLSEDC 280 (344)
T ss_dssp EEEEECSSCTTEEEEEETT--------SEEEEEESCC--CCE--EEE-------CCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred eeeeecCCCCcceEEeccC--------CcEEEEECCCCcEEE--EEc-------CCCCCEEEEEEccCCCeEEEEEeCCC
Confidence 1222 245677666532 459999887543111 110 001123332 334544444444567
Q ss_pred eEEEEECCCCcEEEccCCCCCCCCcccceeeeeece
Q 015511 364 SLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEP 399 (405)
Q Consensus 364 ~~~~Yd~~~~~w~~l~~~p~~~~~~~~~~~~~~~~p 399 (405)
.+.+||+++++...+. .|. ....+++|.|
T Consensus 281 ~i~vwd~~~~~~~~~~----~H~---~~V~~v~~sp 309 (344)
T 4gqb_B 281 SLAVLDSSLSELFRSQ----AHR---DFVRDATWSP 309 (344)
T ss_dssp CEEEECTTCCEEEEEC----CCS---SCEEEEEECS
T ss_pred eEEEEECCCCcEEEEc----CCC---CCEEEEEEeC
Confidence 8999999988755432 122 2245667765
No 51
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=91.69 E-value=1.3 Score=38.21 Aligned_cols=108 Identities=11% Similarity=-0.026 Sum_probs=69.2
Q ss_pred EECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEE
Q 015511 237 ICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIG 316 (405)
Q Consensus 237 ~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~ 316 (405)
+.++.+|.-++.. ..|..+|+++.+-.. .+ +|.....-.+...+++||+++... ..+
T Consensus 62 ~~~~~Ly~stG~~--------g~v~~iD~~Tgkv~~-----~~-l~~~~FgeGit~~g~~Ly~ltw~~--------~~v- 118 (268)
T 3nok_A 62 FHQGHFFESTGHQ--------GTLRQLSLESAQPVW-----ME-RLGNIFAEGLASDGERLYQLTWTE--------GLL- 118 (268)
T ss_dssp EETTEEEEEETTT--------TEEEECCSSCSSCSE-----EE-ECTTCCEEEEEECSSCEEEEESSS--------CEE-
T ss_pred EECCEEEEEcCCC--------CEEEEEECCCCcEEe-----EE-CCCCcceeEEEEeCCEEEEEEccC--------CEE-
Confidence 4478888877432 249999999988432 23 554443345777889999987421 234
Q ss_pred EEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEE
Q 015511 317 IWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 317 vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~ 377 (405)
|..|...-+.+.+++.. . ...++...++.+|+.. ....+.++|+++.+...
T Consensus 119 -~V~D~~Tl~~~~ti~~~---~-----eGwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~ 169 (268)
T 3nok_A 119 -FTWSGMPPQRERTTRYS---G-----EGWGLCYWNGKLVRSD-GGTMLTFHEPDGFALVG 169 (268)
T ss_dssp -EEEETTTTEEEEEEECS---S-----CCCCEEEETTEEEEEC-SSSEEEEECTTTCCEEE
T ss_pred -EEEECCcCcEEEEEeCC---C-----ceeEEecCCCEEEEEC-CCCEEEEEcCCCCeEEE
Confidence 44455555555555431 0 1235556788888886 47899999999976543
No 52
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=91.38 E-value=7.1 Score=34.38 Aligned_cols=226 Identities=12% Similarity=0.026 Sum_probs=112.2
Q ss_pred eeEEecCCCCeeee-ccCCCCCCCCeEEEe-cCceEEEEeCCCCceEEEEeCcccceee-ccCCCCCCC---CccceeEE
Q 015511 105 IGYAYDPILRKWYG-IELPCIETSNWFIAS-SYGLVCFMDNDSRSELYVCNPISKSWKK-LEEPPGLKF---SDYSALSL 178 (405)
Q Consensus 105 ~~~~~d~~~~~w~~-~~~p~~~~~~~~~~s-~~Gll~~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~---~~~~~~~~ 178 (405)
....+|+..++... ++.... ...+.-+ .+..+++... ....+.++|+.+++... ++....... .......+
T Consensus 70 ~v~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~-~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (353)
T 3vgz_A 70 VVYRLDPVTLEVTQAIHNDLK--PFGATINNTTQTLWFGNT-VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPREL 146 (353)
T ss_dssp EEEEECTTTCCEEEEEEESSC--CCSEEEETTTTEEEEEET-TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEE
T ss_pred cEEEEcCCCCeEEEEEecCCC--cceEEECCCCCEEEEEec-CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceE
Confidence 45667776654322 222211 1223333 4455666544 24689999999987643 332111110 01112345
Q ss_pred EEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE-Cc-EEEeeEEecCCCCCCC
Q 015511 179 SVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC-DG-VLYFLIYATGGGAPEN 256 (405)
Q Consensus 179 ~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~-~g-~iy~l~~~~~~~~~~~ 256 (405)
.+++..+ + +++..... ...+.+||..++.=.... +. .. .......+. +| .+|+...
T Consensus 147 ~~s~dg~-~-l~~~~~~~--------~~~i~~~d~~~~~~~~~~-~~-~~-~~~~~~~~s~dg~~l~~~~~--------- 204 (353)
T 3vgz_A 147 VADDATN-T-VYISGIGK--------ESVIWVVDGGNIKLKTAI-QN-TG-KMSTGLALDSEGKRLYTTNA--------- 204 (353)
T ss_dssp EEETTTT-E-EEEEEESS--------SCEEEEEETTTTEEEEEE-CC-CC-TTCCCCEEETTTTEEEEECT---------
T ss_pred EECCCCC-E-EEEEecCC--------CceEEEEcCCCCceEEEe-cC-CC-CccceEEECCCCCEEEEEcC---------
Confidence 5666543 2 44433211 136888988655422110 00 11 111122222 44 4555432
Q ss_pred ccEEEEEECCCCcchhhhcccccccCCcc---ccCceEE-eCCc-EEEEEccccccccCccceEEEEEEeCceeEEEecc
Q 015511 257 RHGLISFNLSSRSSHALLIKSFIPVPCAL---TCGRLMN-LKEK-LVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARM 331 (405)
Q Consensus 257 ~~~i~~fD~~~~~w~~~~~~~~~~~p~~~---~~~~l~~-~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i 331 (405)
...+..||+.+.+-.. .+..+... ....+.. -+|+ ||+.... ...+.+|+++..+-.....+
T Consensus 205 ~~~i~~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--------~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 205 DGELITIDTADNKILS-----RKKLLDDGKEHFFINISLDTARQRAFITDSK--------AAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp TSEEEEEETTTTEEEE-----EEECCCSSSCCCEEEEEEETTTTEEEEEESS--------SSEEEEEETTTCCEEEEEEC
T ss_pred CCeEEEEECCCCeEEE-----EEEcCCCCCCcccceEEECCCCCEEEEEeCC--------CCEEEEEECCCCcEEEEEEc
Confidence 2478899998876321 12221110 1111333 3455 6555431 24588888776554433333
Q ss_pred ChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEE
Q 015511 332 PHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~ 377 (405)
+.. ..+++...++.+|+.......+.+||+++++...
T Consensus 272 ~~~---------~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 272 PES---------LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK 308 (353)
T ss_dssp SSC---------CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCC---------ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence 221 1245566788899987667899999999887654
No 53
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=90.69 E-value=7.8 Score=33.64 Aligned_cols=199 Identities=8% Similarity=0.034 Sum_probs=97.3
Q ss_pred CceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCC
Q 015511 135 YGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSD 214 (405)
Q Consensus 135 ~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~ 214 (405)
+|.|+..+.. ...++.+||.+++...+.... ...++..++..+ +++.. ...+.+|+..
T Consensus 24 ~~~l~~~d~~-~~~i~~~d~~~~~~~~~~~~~-------~~~~i~~~~dG~---l~v~~-----------~~~l~~~d~~ 81 (297)
T 3g4e_A 24 SNSLLFVDIP-AKKVCRWDSFTKQVQRVTMDA-------PVSSVALRQSGG---YVATI-----------GTKFCALNWK 81 (297)
T ss_dssp TTEEEEEETT-TTEEEEEETTTCCEEEEECSS-------CEEEEEEBTTSS---EEEEE-----------TTEEEEEETT
T ss_pred CCEEEEEECC-CCEEEEEECCCCcEEEEeCCC-------ceEEEEECCCCC---EEEEE-----------CCeEEEEECC
Confidence 4556665542 478899999998775543221 123455565543 33322 1267889988
Q ss_pred CCCcccccccccccccCCCccEEE--CcEEEeeEEecCCC---CCCCccEEEEEECCCCcchhhhcccccccCCccccCc
Q 015511 215 TMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGG---APENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGR 289 (405)
Q Consensus 215 ~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~---~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~ 289 (405)
++..+................+.+ +|.+|+-....+.. .......|..+|+.... ..+ ......| ..
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~--~~~~~~p-----ng 153 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKY--FDQVDIS-----NG 153 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEE--EEEESBE-----EE
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEE--eeccccc-----cc
Confidence 887755422100000000122333 68877644321100 01223578889886332 110 0011111 12
Q ss_pred eEE-eCCc-EEEEEccccccccCccceEEEEEEe--CceeE---EEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCC
Q 015511 290 LMN-LKEK-LVMVGGIGKQDRPDIIKGIGIWVLN--GKEWQ---EVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGA 362 (405)
Q Consensus 290 l~~-~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~--~~~W~---~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 362 (405)
++. -+|+ ||++... ...+.+|.++ ++... .+..++... ....-+++.. ++.||+.....
T Consensus 154 i~~spdg~~lyv~~~~--------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~-----~~p~g~~~d~-~G~lwva~~~~ 219 (297)
T 3g4e_A 154 LDWSLDHKIFYYIDSL--------SYSVDAFDYDLQTGQISNRRSVYKLEKEE-----QIPDGMCIDA-EGKLWVACYNG 219 (297)
T ss_dssp EEECTTSCEEEEEEGG--------GTEEEEEEECTTTCCEEEEEEEEECCGGG-----CEEEEEEEBT-TSCEEEEEETT
T ss_pred eEEcCCCCEEEEecCC--------CCcEEEEeccCCCCcccCcEEEEECCCCC-----CCCCeeEECC-CCCEEEEEcCC
Confidence 333 2454 7766642 2457888875 33332 122333210 0011223333 44678876555
Q ss_pred CeEEEEECCCCcEEE
Q 015511 363 PSLLVYDMNLKQWRW 377 (405)
Q Consensus 363 ~~~~~Yd~~~~~w~~ 377 (405)
..+.+||+++++...
T Consensus 220 ~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQ 234 (297)
T ss_dssp TEEEEECTTTCCEEE
T ss_pred CEEEEEcCCCceEEE
Confidence 689999999876644
No 54
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=90.39 E-value=2.1 Score=37.10 Aligned_cols=108 Identities=15% Similarity=0.112 Sum_probs=67.4
Q ss_pred cEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEE
Q 015511 240 GVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWV 319 (405)
Q Consensus 240 g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~ 319 (405)
|.+|.-.+.. ....|..+|+.+.+-. ..++++.....-.+...+++||+..-. ...+.|+
T Consensus 32 g~Lyvstg~~------~~s~v~~iD~~tg~v~-----~~i~l~~~~fgeGi~~~g~~lyv~t~~--------~~~v~vi- 91 (266)
T 2iwa_A 32 DTLFESTGLY------GRSSVRQVALQTGKVE-----NIHKMDDSYFGEGLTLLNEKLYQVVWL--------KNIGFIY- 91 (266)
T ss_dssp TEEEEEECST------TTCEEEEEETTTCCEE-----EEEECCTTCCEEEEEEETTEEEEEETT--------CSEEEEE-
T ss_pred CeEEEECCCC------CCCEEEEEECCCCCEE-----EEEecCCCcceEEEEEeCCEEEEEEec--------CCEEEEE-
Confidence 7888876421 2358999999998733 234444433333466678899988742 2335555
Q ss_pred EeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEE
Q 015511 320 LNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWR 376 (405)
Q Consensus 320 l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~ 376 (405)
|....+.+.+++.. . ....++...|+.+|+.. ....+.++|+++.+-.
T Consensus 92 -D~~t~~v~~~i~~g--~-----~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~ 139 (266)
T 2iwa_A 92 -DRRTLSNIKNFTHQ--M-----KDGWGLATDGKILYGSD-GTSILYEIDPHTFKLI 139 (266)
T ss_dssp -ETTTTEEEEEEECC--S-----SSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEE
T ss_pred -ECCCCcEEEEEECC--C-----CCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEE
Confidence 44444555555432 1 11245566788899876 5789999999997543
No 55
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=89.38 E-value=8.9 Score=32.31 Aligned_cols=190 Identities=11% Similarity=0.078 Sum_probs=97.3
Q ss_pred EEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEE
Q 015511 130 FIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIH 209 (405)
Q Consensus 130 ~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~ 209 (405)
+.-..+|.+++.+. ...++++|+.++....++.... ....++..++.. ++++.... ...+.
T Consensus 72 i~~~~~g~l~v~~~--~~~i~~~d~~~~~~~~~~~~~~-----~~p~~i~~~~~g---~l~v~~~~---------~~~i~ 132 (270)
T 1rwi_B 72 LAVDGAGTVYVTDF--NNRVVTLAAGSNNQTVLPFDGL-----NYPEGLAVDTQG---AVYVADRG---------NNRVV 132 (270)
T ss_dssp EEECTTCCEEEEET--TTEEEEECTTCSCCEECCCCSC-----SSEEEEEECTTC---CEEEEEGG---------GTEEE
T ss_pred eEECCCCCEEEEcC--CCEEEEEeCCCceEeeeecCCc-----CCCcceEECCCC---CEEEEECC---------CCEEE
Confidence 44445677777664 4789999998877665542210 122456666643 35554321 12677
Q ss_pred EEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc
Q 015511 210 IYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC 287 (405)
Q Consensus 210 vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~ 287 (405)
+|+.++........ .... ....+.+ +|.+|+.... ...|..||+.+..... .........
T Consensus 133 ~~~~~~~~~~~~~~---~~~~-~p~~i~~~~~g~l~v~~~~--------~~~i~~~~~~~~~~~~------~~~~~~~~p 194 (270)
T 1rwi_B 133 KLAAGSKTQTVLPF---TGLN-DPDGVAVDNSGNVYVTDTD--------NNRVVKLEAESNNQVV------LPFTDITAP 194 (270)
T ss_dssp EECTTCCSCEECCC---CSCC-SCCCEEECTTCCEEEEEGG--------GTEEEEECTTTCCEEE------CCCSSCCSE
T ss_pred EEECCCceeEeecc---ccCC-CceeEEEeCCCCEEEEECC--------CCEEEEEecCCCceEe------ecccCCCCc
Confidence 77765544332111 1111 1123444 6888876532 2479999988765221 111110111
Q ss_pred CceEE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEE--eeCCCEEEEEeCCCCe
Q 015511 288 GRLMN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFAS--SGTDDLIYIQSYGAPS 364 (405)
Q Consensus 288 ~~l~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~ 364 (405)
..++. .+|.||+.... ...+.+|..+...-.. ++. ..+ ..+.++ ...| .+|+.......
T Consensus 195 ~~i~~d~~g~l~v~~~~--------~~~v~~~~~~~~~~~~---~~~---~~~---~~p~~i~~~~~g-~l~v~~~~~~~ 256 (270)
T 1rwi_B 195 WGIAVDEAGTVYVTEHN--------TNQVVKLLAGSTTSTV---LPF---TGL---NTPLAVAVDSDR-TVYVADRGNDR 256 (270)
T ss_dssp EEEEECTTCCEEEEETT--------TSCEEEECTTCSCCEE---CCC---CSC---SCEEEEEECTTC-CEEEEEGGGTE
T ss_pred eEEEECCCCCEEEEECC--------CCcEEEEcCCCCccee---ecc---CCC---CCceeEEECCCC-CEEEEECCCCE
Confidence 12333 35788887742 1346666655432111 110 000 122333 3344 58887766778
Q ss_pred EEEEECCCCc
Q 015511 365 LLVYDMNLKQ 374 (405)
Q Consensus 365 ~~~Yd~~~~~ 374 (405)
+.+|++..++
T Consensus 257 v~~~~~~~~~ 266 (270)
T 1rwi_B 257 VVKLTSLEHH 266 (270)
T ss_dssp EEEECCCGGG
T ss_pred EEEEcCCCcc
Confidence 9999987654
No 56
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=88.09 E-value=13 Score=32.44 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=28.9
Q ss_pred ceEEEEEEeCceeEEEeccChhHHhccCCCCceeEE--eeCCCEEEEEeCCCCeEEEEECCCCc
Q 015511 313 KGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFAS--SGTDDLIYIQSYGAPSLLVYDMNLKQ 374 (405)
Q Consensus 313 ~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~Yd~~~~~ 374 (405)
..+.+|+++...-.....-+.......+....+.++ ...++.|+.. ..+..+.+||+++++
T Consensus 277 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg-s~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 277 PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG-YTDNLVRVWQVTIGT 339 (340)
T ss_dssp TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEE-ETTSCEEEEEEEC--
T ss_pred CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEE-eCCCEEEEEeCCCcC
Confidence 458999887654222211111111000111233333 3456655543 457789999999874
No 57
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=87.95 E-value=15 Score=33.20 Aligned_cols=223 Identities=10% Similarity=0.005 Sum_probs=104.8
Q ss_pred CceEEEEeCCCCceEEEEeCcccceeecc-CCC-CCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015511 135 YGLVCFMDNDSRSELYVCNPISKSWKKLE-EPP-GLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD 212 (405)
Q Consensus 135 ~Gll~~~~~~~~~~~~v~NP~T~~~~~lP-~~~-~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~ 212 (405)
+|-+++.+. .+..+.|||..++....-. .+. ...........+.+.+....+ ++. ++. ...+.+||
T Consensus 93 ~~~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~-l~s-~~~---------dg~i~iwd 160 (402)
T 2aq5_A 93 NDNVIASGS-EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV-LLS-AGC---------DNVILVWD 160 (402)
T ss_dssp CTTEEEEEE-TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTE-EEE-EET---------TSCEEEEE
T ss_pred CCCEEEEEe-CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCE-EEE-EcC---------CCEEEEEE
Confidence 444444332 2478999999887542211 000 000011122344555543233 333 321 12688999
Q ss_pred CCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhccccc-ccCCccccCc
Q 015511 213 SDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFI-PVPCALTCGR 289 (405)
Q Consensus 213 s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~-~~p~~~~~~~ 289 (405)
..++.....-. ..........+.. +|...+.+... ..|..||+.+.+-.. .+ ..........
T Consensus 161 ~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~ 225 (402)
T 2aq5_A 161 VGTGAAVLTLG--PDVHPDTIYSVDWSRDGALICTSCRD--------KRVRVIEPRKGTVVA-----EKDRPHEGTRPVH 225 (402)
T ss_dssp TTTTEEEEEEC--TTTCCSCEEEEEECTTSSCEEEEETT--------SEEEEEETTTTEEEE-----EEECSSCSSSCCE
T ss_pred CCCCCccEEEe--cCCCCCceEEEEECCCCCEEEEEecC--------CcEEEEeCCCCceee-----eeccCCCCCcceE
Confidence 87765422110 0111111122323 55555544322 479999998765221 11 1111111122
Q ss_pred eE-EeCCcEEEEEccccccccCccceEEEEEEeCcee-EEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEE
Q 015511 290 LM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEW-QEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLV 367 (405)
Q Consensus 290 l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W-~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 367 (405)
+. .-+|++++++.... ....+.+|++...+- .....++.. ..-..+.+...++.+++....+..+.+
T Consensus 226 ~~~~~~~~~l~~g~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~g~~dg~i~i 294 (402)
T 2aq5_A 226 AVFVSEGKILTTGFSRM-----SERQVALWDTKHLEEPLSLQELDTS------SGVLLPFFDPDTNIVYLCGKGDSSIRY 294 (402)
T ss_dssp EEECSTTEEEEEEECTT-----CCEEEEEEETTBCSSCSEEEECCCC------SSCEEEEEETTTTEEEEEETTCSCEEE
T ss_pred EEEcCCCcEEEEeccCC-----CCceEEEEcCccccCCceEEeccCC------CceeEEEEcCCCCEEEEEEcCCCeEEE
Confidence 22 23577766652100 135699998875321 112222210 000122345678888887766789999
Q ss_pred EECCCCc--EEEccCCCCCCCCcccceeeeeecee
Q 015511 368 YDMNLKQ--WRWSHKCPVTKRFPLQLFTGFCFEPR 400 (405)
Q Consensus 368 Yd~~~~~--w~~l~~~p~~~~~~~~~~~~~~~~p~ 400 (405)
||+++++ ...+..... .....+++|.|.
T Consensus 295 ~d~~~~~~~~~~l~~~~~-----~~~v~~~~~sp~ 324 (402)
T 2aq5_A 295 FEITSEAPFLHYLSMFSS-----KESQRGMGYMPK 324 (402)
T ss_dssp EEECSSTTCEEEEEEECC-----SSCCSEEEECCG
T ss_pred EEecCCCcceEeeccccc-----CCcccceEEecc
Confidence 9999987 555543321 112446666654
No 58
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=87.79 E-value=16 Score=33.35 Aligned_cols=107 Identities=11% Similarity=0.077 Sum_probs=55.0
Q ss_pred ecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015511 133 SSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD 212 (405)
Q Consensus 133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~ 212 (405)
|.+++|.+. . .+.++|||..|++...+-.... .......+.+.+.+ .| +++++. .-.+.+|+
T Consensus 114 S~~n~lAvg-l--d~tV~lWd~~tg~~~~~~~~~~---~~~~V~sv~fspdg-~~--lasgs~---------Dg~v~iWd 175 (420)
T 4gga_A 114 SSGNVLAVA-L--DNSVYLWSASSGDILQLLQMEQ---PGEYISSVAWIKEG-NY--LAVGTS---------SAEVQLWD 175 (420)
T ss_dssp CTTSEEEEE-E--TTEEEEEETTTCCEEEEEECCS---TTCCEEEEEECTTS-SE--EEEEET---------TSCEEEEE
T ss_pred CCCCEEEEE-e--CCEEEEEECCCCCEEEEEEecC---CCCcEEEEEECCCC-CE--EEEEEC---------CCeEEEEE
Confidence 445655443 3 3789999999998876543321 11122345555543 33 444432 13788999
Q ss_pred CCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc
Q 015511 213 SDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS 269 (405)
Q Consensus 213 s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~ 269 (405)
..++.-... .........++..++.+...+... ..+..+|.....
T Consensus 176 ~~~~~~~~~----~~~h~~~v~~~s~~~~~l~sgs~d--------~~i~~~d~~~~~ 220 (420)
T 4gga_A 176 VQQQKRLRN----MTSHSARVGSLSWNSYILSSGSRS--------GHIHHHDVRVAE 220 (420)
T ss_dssp TTTTEEEEE----ECCCSSCEEEEEEETTEEEEEETT--------SEEEEEETTSSS
T ss_pred cCCCcEEEE----EeCCCCceEEEeeCCCEEEEEeCC--------CceeEeeecccc
Confidence 876542111 111111112344456554444322 467778876554
No 59
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=87.62 E-value=25 Score=35.29 Aligned_cols=185 Identities=11% Similarity=0.099 Sum_probs=87.6
Q ss_pred ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccccc
Q 015511 147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVL 226 (405)
Q Consensus 147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~ 226 (405)
+.+.|||..++.+..+..... + ......+.+.+..+.-.++. ++. .-.+.+|+..++.|..... .
T Consensus 31 g~I~vwd~~~~~~~~~~~l~~-h--~~~V~~l~~s~~~~~~~l~s-~s~---------Dg~I~vwd~~~~~~~~~~~--~ 95 (753)
T 3jro_A 31 KTIKIFEVEGETHKLIDTLTG-H--EGPVWRVDWAHPKFGTILAS-CSY---------DGKVLIWKEENGRWSQIAV--H 95 (753)
T ss_dssp TEEEEEEEETTEEEEEEEECC-C--SSCEEEEEECCTTSCSEEEE-EET---------TSCEEEEEEETTEEEEEEE--E
T ss_pred CcEEEEecCCCCCccceeccC-C--cCceEEEEecCCCCCCEEEE-EeC---------CCeEEEEECCCCccccccc--c
Confidence 667788877555544433321 1 11223444544321223333 321 1268889988877654321 1
Q ss_pred ccccCCCccEEE--C--cEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc-CceEEe--------
Q 015511 227 TGWRAGDESIIC--D--GVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC-GRLMNL-------- 293 (405)
Q Consensus 227 ~~~~~~~~~v~~--~--g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l~~~-------- 293 (405)
.........+.. + |.+.+.+... ..+..||+.+..-.. .......... ..+...
T Consensus 96 ~~h~~~V~~v~~sp~~~~~~l~sgs~d--------g~I~vwdl~~~~~~~-----~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 96 AVHSASVNSVQWAPHEYGPLLLVASSD--------GKVSVVEFKENGTTS-----PIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETT--------SEEEEEECCSSSCCC-----CEEEECCSSCEEEEEECCCC-----
T ss_pred cCCCCCeEEEEECCCCCCCEEEEEeCC--------CcEEEEEeecCCCcc-----eeEeecCCCceEEEEecCccccccc
Confidence 111111122333 2 5555555332 478899987763211 0111110000 011111
Q ss_pred ------CCcEEEEEccccccccCccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEE--eeCC--CEEEEEeCC
Q 015511 294 ------KEKLVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFAS--SGTD--DLIYIQSYG 361 (405)
Q Consensus 294 ------~G~L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~--~~~~--~~i~~~~~~ 361 (405)
+|+++++++.+ ..+.+|++.. ..+..+..+... ...+.++ ...+ +.+++....
T Consensus 163 ~~~~~~d~~~l~sgs~d--------g~I~iwd~~~~~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 163 EHNGTKESRKFVTGGAD--------NLVKIWKYNSDAQTYVLESTLEGH-------SDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp ----CGGGCCEEEEETT--------SCEEEEEEETTTTEEEEEEEECCC-------SSCEEEEEECCCCSSSEEEEEEES
T ss_pred ccccCCCCCEEEEEECC--------CeEEEEeccCCcccceeeeeecCC-------CCcEEEEEeccCCCCCCEEEEEec
Confidence 35666665532 4599999985 355555444310 1123333 3341 444444445
Q ss_pred CCeEEEEECCCCc
Q 015511 362 APSLLVYDMNLKQ 374 (405)
Q Consensus 362 ~~~~~~Yd~~~~~ 374 (405)
+..+.+||+++++
T Consensus 228 Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 228 DRTCIIWTQDNEQ 240 (753)
T ss_dssp SSCEEEEEESSSS
T ss_pred CCEEEEecCCCCC
Confidence 7789999999863
No 60
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=87.27 E-value=15 Score=32.27 Aligned_cols=190 Identities=8% Similarity=-0.012 Sum_probs=91.8
Q ss_pred CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccc
Q 015511 146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEV 225 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~ 225 (405)
...++++|+.|++....-+... . ...+.+++..+ + +++.... ...+.+||..+++-...- +.
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~-~-----~~~~~~s~dg~-~-l~v~~~~---------~~~v~~~d~~~~~~~~~~-~~ 129 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDL-K-----PFGATINNTTQ-T-LWFGNTV---------NSAVTAIDAKTGEVKGRL-VL 129 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-C-----CCSEEEETTTT-E-EEEEETT---------TTEEEEEETTTCCEEEEE-ES
T ss_pred CccEEEEcCCCCeEEEEEecCC-C-----cceEEECCCCC-E-EEEEecC---------CCEEEEEeCCCCeeEEEE-ec
Confidence 3679999999987654322111 1 12344444432 2 4444321 137888988776532110 10
Q ss_pred ccccc------CCCccEEE--Cc-EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceE-EeCC
Q 015511 226 LTGWR------AGDESIIC--DG-VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKE 295 (405)
Q Consensus 226 ~~~~~------~~~~~v~~--~g-~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G 295 (405)
..... .....+.+ +| .+|+..... ...|..+|+.+.+-.. .++... .....+. .-+|
T Consensus 130 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-------~~~i~~~d~~~~~~~~-----~~~~~~-~~~~~~~~s~dg 196 (353)
T 3vgz_A 130 DDRKRTEEVRPLQPRELVADDATNTVYISGIGK-------ESVIWVVDGGNIKLKT-----AIQNTG-KMSTGLALDSEG 196 (353)
T ss_dssp CCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-------SCEEEEEETTTTEEEE-----EECCCC-TTCCCCEEETTT
T ss_pred CCCccccccCCCCCceEEECCCCCEEEEEecCC-------CceEEEEcCCCCceEE-----EecCCC-CccceEEECCCC
Confidence 00000 00112333 44 466554211 2479999998776321 122111 1112233 3356
Q ss_pred cEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcE
Q 015511 296 KLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQW 375 (405)
Q Consensus 296 ~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w 375 (405)
+.+++... ...+.+|++...+-......+..-.. ....-+++...++.+|+.......+.+||+++++.
T Consensus 197 ~~l~~~~~--------~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 197 KRLYTTNA--------DGELITIDTADNKILSRKKLLDDGKE---HFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI 265 (353)
T ss_dssp TEEEEECT--------TSEEEEEETTTTEEEEEEECCCSSSC---CCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE
T ss_pred CEEEEEcC--------CCeEEEEECCCCeEEEEEEcCCCCCC---cccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 54444432 13467777765432222222110000 00011345567888998876668999999998876
Q ss_pred EE
Q 015511 376 RW 377 (405)
Q Consensus 376 ~~ 377 (405)
..
T Consensus 266 ~~ 267 (353)
T 3vgz_A 266 LA 267 (353)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=86.98 E-value=19 Score=33.16 Aligned_cols=112 Identities=13% Similarity=0.214 Sum_probs=59.6
Q ss_pred cEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccce
Q 015511 235 SIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKG 314 (405)
Q Consensus 235 ~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~ 314 (405)
.+..+|...+.+... ..+..||+.+.+-. ............+..+|+++++++.+ ..
T Consensus 284 ~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~-------~~~~~~~~~v~~~~~~~~~l~~~~~d--------g~ 340 (445)
T 2ovr_B 284 SLQFDGIHVVSGSLD--------TSIRVWDVETGNCI-------HTLTGHQSLTSGMELKDNILVSGNAD--------ST 340 (445)
T ss_dssp EEEECSSEEEEEETT--------SCEEEEETTTCCEE-------EEECCCCSCEEEEEEETTEEEEEETT--------SC
T ss_pred EEEECCCEEEEEeCC--------CeEEEEECCCCCEE-------EEEcCCcccEEEEEEeCCEEEEEeCC--------Ce
Confidence 344466665555432 46999999876621 11111111112234456666665532 45
Q ss_pred EEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEE
Q 015511 315 IGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWR 376 (405)
Q Consensus 315 ~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~ 376 (405)
+.+|++...+-......+.. ....+.++...++.++... .+..+.+||+++++..
T Consensus 341 i~vwd~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 341 VKIWDIKTGQCLQTLQGPNK------HQSAVTCLQFNKNFVITSS-DDGTVKLWDLKTGEFI 395 (445)
T ss_dssp EEEEETTTCCEEEEECSTTS------CSSCEEEEEECSSEEEEEE-TTSEEEEEETTTCCEE
T ss_pred EEEEECCCCcEEEEEccCCC------CCCCEEEEEECCCEEEEEe-CCCeEEEEECCCCcee
Confidence 99999876543222211110 0123444444566655544 5679999999988653
No 62
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=86.83 E-value=16 Score=32.33 Aligned_cols=180 Identities=8% Similarity=0.101 Sum_probs=81.9
Q ss_pred CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccc
Q 015511 146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEV 225 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~ 225 (405)
++.+.|||..++++.........+. .....+.+.+.. .+ ++.++. ...+.+|+..++.+.....
T Consensus 37 D~~i~iw~~~~~~~~~~~~~~~~h~--~~v~~~~~sp~g-~~--l~s~s~---------D~~v~iw~~~~~~~~~~~~-- 100 (345)
T 3fm0_A 37 DRRIRIWGTEGDSWICKSVLSEGHQ--RTVRKVAWSPCG-NY--LASASF---------DATTCIWKKNQDDFECVTT-- 100 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECSSCS--SCEEEEEECTTS-SE--EEEEET---------TSCEEEEEECCC-EEEEEE--
T ss_pred CCeEEEEEcCCCcceeeeeeccccC--CcEEEEEECCCC-CE--EEEEEC---------CCcEEEEEccCCCeEEEEE--
Confidence 3678889988877653321111111 122344555533 22 333332 1267788776665533211
Q ss_pred cccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccc-cCCccccC-ceE-EeCCcEEEE
Q 015511 226 LTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIP-VPCALTCG-RLM-NLKEKLVMV 300 (405)
Q Consensus 226 ~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~-~p~~~~~~-~l~-~~~G~L~~v 300 (405)
..........+.. +|.+.+.+... ..+..+|+.+..-.. .+. ........ .+. .-+|++++.
T Consensus 101 ~~~h~~~v~~v~~sp~~~~l~s~s~D--------~~v~iwd~~~~~~~~-----~~~~~~~h~~~v~~~~~~p~~~~l~s 167 (345)
T 3fm0_A 101 LEGHENEVKSVAWAPSGNLLATCSRD--------KSVWVWEVDEEDEYE-----CVSVLNSHTQDVKHVVWHPSQELLAS 167 (345)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETT--------SCEEEEEECTTSCEE-----EEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred ccCCCCCceEEEEeCCCCEEEEEECC--------CeEEEEECCCCCCeE-----EEEEecCcCCCeEEEEECCCCCEEEE
Confidence 1111111112222 45544444322 368888886643110 011 11101111 122 124666655
Q ss_pred EccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeE--EeeCCCEEEEEeCCCCeEEEEEC
Q 015511 301 GGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFA--SSGTDDLIYIQSYGAPSLLVYDM 370 (405)
Q Consensus 301 ~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~Yd~ 370 (405)
+..+ ..+.+|++...+|..+..+... ...+.+ +...++.+.... .+..+.+||.
T Consensus 168 ~s~d--------~~i~~w~~~~~~~~~~~~~~~h-------~~~v~~l~~sp~g~~l~s~s-~D~~v~iW~~ 223 (345)
T 3fm0_A 168 ASYD--------DTVKLYREEEDDWVCCATLEGH-------ESTVWSLAFDPSGQRLASCS-DDRTVRIWRQ 223 (345)
T ss_dssp EETT--------SCEEEEEEETTEEEEEEEECCC-------SSCEEEEEECTTSSEEEEEE-TTSCEEEEEE
T ss_pred EeCC--------CcEEEEEecCCCEEEEEEecCC-------CCceEEEEECCCCCEEEEEe-CCCeEEEecc
Confidence 5432 4599999999888766554320 112222 233455444433 4567777775
No 63
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=86.77 E-value=19 Score=33.04 Aligned_cols=204 Identities=12% Similarity=0.022 Sum_probs=104.6
Q ss_pred ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccccc
Q 015511 147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVL 226 (405)
Q Consensus 147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~ 226 (405)
..++++|..+++...+...+. ....+.+.|++ .+ |++.+... + ...+.+|+..++.......
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~~------~~~~~~~spdg-~~-la~~~~~~--g-----~~~i~~~d~~~~~~~~l~~--- 264 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFPR------HNGAPAFSPDG-SK-LAFALSKT--G-----SLNLYVMDLASGQIRQVTD--- 264 (415)
T ss_dssp CEEEEEETTTCCEEEEECCSS------CEEEEEECTTS-SE-EEEEECTT--S-----SCEEEEEETTTCCEEECCC---
T ss_pred cEEEEEECCCCcEEEeecCCC------cccCEEEcCCC-CE-EEEEEecC--C-----CceEEEEECCCCCEEeCcC---
Confidence 589999999998877654321 12344455543 23 33333211 1 2478899988776543221
Q ss_pred ccccCCCccEEE--CcE-EEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEcc
Q 015511 227 TGWRAGDESIIC--DGV-LYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGI 303 (405)
Q Consensus 227 ~~~~~~~~~v~~--~g~-iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~ 303 (405)
.......+.. +|. |++..... ....|..+|+.+.+-. .+.........-...-+|+.+++...
T Consensus 265 --~~~~~~~~~~spdg~~l~~~s~~~------g~~~i~~~d~~~~~~~------~l~~~~~~~~~~~~spdG~~l~~~~~ 330 (415)
T 2hqs_A 265 --GRSNNTEPTWFPDSQNLAFTSDQA------GRPQVYKVNINGGAPQ------RITWEGSQNQDADVSSDGKFMVMVSS 330 (415)
T ss_dssp --CSSCEEEEEECTTSSEEEEEECTT------SSCEEEEEETTSSCCE------ECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred --CCCcccceEECCCCCEEEEEECCC------CCcEEEEEECCCCCEE------EEecCCCcccCeEECCCCCEEEEEEC
Confidence 0111112222 554 44443211 1247888999876532 11111111111112235665555432
Q ss_pred ccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCC--CeEEEEECCCCcEEEccCC
Q 015511 304 GKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGA--PSLLVYDMNLKQWRWSHKC 381 (405)
Q Consensus 304 ~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~Yd~~~~~w~~l~~~ 381 (405)
.. ....+.+|+++.++...+..-. . ...++....|..|++..... ..+.++|++++..+.++..
T Consensus 331 ~~-----g~~~i~~~d~~~~~~~~l~~~~----~-----~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~ 396 (415)
T 2hqs_A 331 NG-----GQQHIAKQDLATGGVQVLSSTF----L-----DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT 396 (415)
T ss_dssp CS-----SCEEEEEEETTTCCEEECCCSS----S-----CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS
T ss_pred cC-----CceEEEEEECCCCCEEEecCCC----C-----cCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCC
Confidence 11 1245778877776654332111 0 12234456777777655322 2799999999888887532
Q ss_pred CCCCCCcccceeeeeeceeccC
Q 015511 382 PVTKRFPLQLFTGFCFEPRLEI 403 (405)
Q Consensus 382 p~~~~~~~~~~~~~~~~p~~~~ 403 (405)
. ......+|.|..|-
T Consensus 397 ~-------~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 397 D-------GQVKFPAWSPYLHH 411 (415)
T ss_dssp S-------SEEEEEEECCCCCC
T ss_pred C-------CCCcCCcccccccc
Confidence 2 12457788887653
No 64
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=86.57 E-value=17 Score=32.26 Aligned_cols=68 Identities=6% Similarity=-0.049 Sum_probs=42.0
Q ss_pred ceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-CCeEEEEECC--CCcEEEccCCC
Q 015511 313 KGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-APSLLVYDMN--LKQWRWSHKCP 382 (405)
Q Consensus 313 ~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~Yd~~--~~~w~~l~~~p 382 (405)
..+.+|+++.++.+.+..++... ..+. ...-+++...|+.+|+.... ...+.+|+++ +++++.+...+
T Consensus 233 ~~v~v~~~~~g~~~~~~~~~~~~-~~~~-~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~ 303 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQTVAADT-VNAQ-GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL 303 (361)
T ss_dssp CEEEEEEEETTEEEEEEEEESCS-SCCC-CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE
T ss_pred CeEEEEEecCCceEEeEEEecCC-CCCC-CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec
Confidence 45999999987776655443110 0000 01123456678889887765 6789999885 67777665443
No 65
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=86.51 E-value=17 Score=32.40 Aligned_cols=178 Identities=11% Similarity=0.067 Sum_probs=81.9
Q ss_pred ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccccc
Q 015511 147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVL 226 (405)
Q Consensus 147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~ 226 (405)
..+.+||..+++....-.... + ......+.+.+... ..++.++. ...+.+|+..++........
T Consensus 96 g~i~iwd~~~~~~~~~~~~~~-h--~~~v~~~~~~~~~~--~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~-- 159 (383)
T 3ei3_B 96 GDIILWDYDVQNKTSFIQGMG-P--GDAITGMKFNQFNT--NQLFVSSI---------RGATTLRDFSGSVIQVFAKT-- 159 (383)
T ss_dssp SCEEEEETTSTTCEEEECCCS-T--TCBEEEEEEETTEE--EEEEEEET---------TTEEEEEETTSCEEEEEECC--
T ss_pred CeEEEEeCCCcccceeeecCC-c--CCceeEEEeCCCCC--CEEEEEeC---------CCEEEEEECCCCceEEEecc--
Confidence 667888888877665433211 1 11223444444222 23333332 13788898875443332110
Q ss_pred ccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceE-EeCCc-EEEEEc
Q 015511 227 TGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEK-LVMVGG 302 (405)
Q Consensus 227 ~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~-L~~v~~ 302 (405)
.........+.+ +|.+.+.+... ..+..||+..+... .+..... .-..+. .-+|+ +++.++
T Consensus 160 ~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~------~~~~h~~-~v~~~~~~~~~~~~l~s~~ 224 (383)
T 3ei3_B 160 DSWDYWYCCVDVSVSRQMLATGDST--------GRLLLLGLDGHEIF------KEKLHKA-KVTHAEFNPRCDWLMATSS 224 (383)
T ss_dssp CCSSCCEEEEEEETTTTEEEEEETT--------SEEEEEETTSCEEE------EEECSSS-CEEEEEECSSCTTEEEEEE
T ss_pred CCCCCCeEEEEECCCCCEEEEECCC--------CCEEEEECCCCEEE------EeccCCC-cEEEEEECCCCCCEEEEEe
Confidence 000011111222 45544444322 47889998543321 1111110 011122 22455 666654
Q ss_pred cccccccCccceEEEEEEeC----ceeEEEeccChhHHhccCCCCcee--EEee-CCCEEEEEeCCCCeEEEEECCCCc
Q 015511 303 IGKQDRPDIIKGIGIWVLNG----KEWQEVARMPHKFFQGFGEFDDVF--ASSG-TDDLIYIQSYGAPSLLVYDMNLKQ 374 (405)
Q Consensus 303 ~~~~~~~~~~~~~~vw~l~~----~~W~~v~~i~~~~~~~~~~~~~~~--~~~~-~~~~i~~~~~~~~~~~~Yd~~~~~ 374 (405)
.+ ..+.+|++.. ...... +.. ...+. ++.. .++.++... .+..+.+||+++++
T Consensus 225 ~d--------~~i~iwd~~~~~~~~~~~~~--~~~--------~~~v~~~~~s~~~~~~l~~~~-~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 225 VD--------ATVKLWDLRNIKDKNSYIAE--MPH--------EKPVNAAYFNPTDSTKLLTTD-QRNEIRVYSSYDWS 284 (383)
T ss_dssp TT--------SEEEEEEGGGCCSTTCEEEE--EEC--------SSCEEEEEECTTTSCEEEEEE-SSSEEEEEETTBTT
T ss_pred CC--------CEEEEEeCCCCCcccceEEE--ecC--------CCceEEEEEcCCCCCEEEEEc-CCCcEEEEECCCCc
Confidence 32 4599999985 222221 111 11222 2334 555555543 46789999988754
No 66
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=84.76 E-value=19 Score=31.34 Aligned_cols=59 Identities=8% Similarity=-0.074 Sum_probs=33.9
Q ss_pred CCCeeEEecCCCCeee-eccCCCCCCCCeEEEecCc-eEEEEeCCCCceEEEEeCcccceee
Q 015511 102 DEPIGYAYDPILRKWY-GIELPCIETSNWFIASSYG-LVCFMDNDSRSELYVCNPISKSWKK 161 (405)
Q Consensus 102 ~~~~~~~~d~~~~~w~-~~~~p~~~~~~~~~~s~~G-ll~~~~~~~~~~~~v~NP~T~~~~~ 161 (405)
.......+|...++.. .++.+.......+.-+.+| .+++... ....++++|+.|++...
T Consensus 19 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~-~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 19 YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN-HYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET-TTTEEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC-CCCcEEEEeCCCCcEEE
Confidence 3446778888776543 2333321122334445555 4555543 34789999999987653
No 67
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=84.65 E-value=20 Score=31.53 Aligned_cols=71 Identities=11% Similarity=0.245 Sum_probs=39.4
Q ss_pred CcEEEEEccccccccCccceEEEEEEeCce--eEEEeccChhHHhccCCCCcee--EEeeCCCEEEEEeCCCCeEEEEEC
Q 015511 295 EKLVMVGGIGKQDRPDIIKGIGIWVLNGKE--WQEVARMPHKFFQGFGEFDDVF--ASSGTDDLIYIQSYGAPSLLVYDM 370 (405)
Q Consensus 295 G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~--W~~v~~i~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~Yd~ 370 (405)
|++++.++.+ ..+.+|++.... +........ .....+. ++...++.++... .+..+.+||+
T Consensus 221 ~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~g~~l~~~~-~dg~i~iw~~ 285 (379)
T 3jrp_A 221 RSYLASVSQD--------RTCIIWTQDNEQGPWKKTLLKEE------KFPDVLWRASWSLSGNVLALSG-GDNKVTLWKE 285 (379)
T ss_dssp SEEEEEEETT--------SCEEEEEESSTTSCCEEEESSSS------CCSSCEEEEEECSSSCCEEEEE-SSSSEEEEEE
T ss_pred CCeEEEEeCC--------CEEEEEeCCCCCccceeeeeccc------cCCCcEEEEEEcCCCCEEEEec-CCCcEEEEeC
Confidence 5666665532 359999999642 222111000 0011222 3345566666554 4678999999
Q ss_pred C-CCcEEEccC
Q 015511 371 N-LKQWRWSHK 380 (405)
Q Consensus 371 ~-~~~w~~l~~ 380 (405)
+ .++|+.+..
T Consensus 286 ~~~~~~~~~~~ 296 (379)
T 3jrp_A 286 NLEGKWEPAGE 296 (379)
T ss_dssp EETTEEEEEEE
T ss_pred CCCCccccccc
Confidence 8 567877654
No 68
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=83.92 E-value=34 Score=34.09 Aligned_cols=110 Identities=9% Similarity=0.097 Sum_probs=60.1
Q ss_pred CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc-CceEEe--CCcEEEEEccccccccCccceE
Q 015511 239 DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC-GRLMNL--KEKLVMVGGIGKQDRPDIIKGI 315 (405)
Q Consensus 239 ~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l~~~--~G~L~~v~~~~~~~~~~~~~~~ 315 (405)
+|.|||.... ....|..+++....-.. ++.. .... ..|+.. +++||++... ...|
T Consensus 507 ~g~ly~td~~-------~~~~I~~~~~dG~~~~~-----l~~~--~l~~PnGlavd~~~~~LY~aD~~--------~~~I 564 (699)
T 1n7d_A 507 HGFMYWTDWG-------TPAKIKKGGLNGVDIYS-----LVTE--NIQWPNGITLDLLSGRLYWVDSK--------LHSI 564 (699)
T ss_dssp SSCCEECCCS-------SSCCEEBCCSSSCCCCE-----ESCS--SCSSCCCEEECTTTCCEEEEETT--------TTEE
T ss_pred CCcEEEcccC-------CCCeEEEEeCCCCCeeE-----EEeC--CCCCccEEEEeccCCEEEEEecC--------CCeE
Confidence 6889997521 12468888876443111 1111 1111 234443 5899988752 2457
Q ss_pred EEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEE
Q 015511 316 GIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 316 ~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~ 377 (405)
.++.++...-..+...+..+ ....++...++.||+.......|.++|..+++-..
T Consensus 565 ~~~d~dG~~~~~~~~~~~~~-------~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 565 SSIDVNGGNRKTILEDEKRL-------AHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp EEECSSSSCCEEECCCSSSC-------SSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEE
T ss_pred EEEccCCCceEEEEecCCcC-------CCceEeEEECCEEEEEeCCCCeEEEEEccCCCceE
Confidence 77777643323332211110 12334444567888887667799999998776544
No 69
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=83.73 E-value=39 Score=33.98 Aligned_cols=219 Identities=15% Similarity=0.133 Sum_probs=105.3
Q ss_pred EEecCCCCeeeeccCCCCCC-CCe-EEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCC
Q 015511 107 YAYDPILRKWYGIELPCIET-SNW-FIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVS 184 (405)
Q Consensus 107 ~~~d~~~~~w~~~~~p~~~~-~~~-~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~ 184 (405)
..||+..+++..+..+.+.. ... +....+|.|.+... ..++++||.++++..+...+...........+..|...
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~---~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g 506 (781)
T 3v9f_A 430 SYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH---AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG 506 (781)
T ss_dssp EEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET---TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC
T ss_pred EEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC---CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC
Confidence 45676666665554321111 222 33344677776543 57899999999987765432111011112334444432
Q ss_pred CcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccC-CCccEEE--CcEEEeeEEecCCCCCCCccEE-
Q 015511 185 HRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRA-GDESIIC--DGVLYFLIYATGGGAPENRHGL- 260 (405)
Q Consensus 185 ~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~-~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i- 260 (405)
.|.+ +.. ...+..|+..++.+.....+ ..... ...+++. +|.+++ +.. ..+
T Consensus 507 ---~lWi-gt~---------~~Gl~~~~~~~~~~~~~~~~--~~l~~~~i~~i~~d~~g~lWi-~T~---------~Glv 561 (781)
T 3v9f_A 507 ---RFWI-GTF---------GGGVGIYTPDMQLVRKFNQY--EGFCSNTINQIYRSSKGQMWL-ATG---------EGLV 561 (781)
T ss_dssp ---CEEE-EES---------SSCEEEECTTCCEEEEECTT--TTCSCSCEEEEEECTTSCEEE-EET---------TEEE
T ss_pred ---CEEE-EEc---------CCCEEEEeCCCCeEEEccCC--CCCCCCeeEEEEECCCCCEEE-EEC---------CCce
Confidence 3333 221 01466788777776553211 11111 1123333 466544 422 256
Q ss_pred EEEECCCCcchhhhcccccccCCccccCceE-EeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhcc
Q 015511 261 ISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGF 339 (405)
Q Consensus 261 ~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~ 339 (405)
..||+.+.++...... --+|.... ..++ ..+|.|.+.+. ..+..+..+...+.....-. ++
T Consensus 562 ~~~d~~~~~~~~~~~~--~gl~~~~i-~~i~~d~~g~lW~~t~----------~Gl~~~~~~~~~~~~~~~~d-----Gl 623 (781)
T 3v9f_A 562 CFPSARNFDYQVFQRK--EGLPNTHI-RAISEDKNGNIWASTN----------TGISCYITSKKCFYTYDHSN-----NI 623 (781)
T ss_dssp EESCTTTCCCEEECGG--GTCSCCCC-CEEEECSSSCEEEECS----------SCEEEEETTTTEEEEECGGG-----TC
T ss_pred EEECCCCCcEEEcccc--CCCCCceE-EEEEECCCCCEEEEcC----------CceEEEECCCCceEEecccC-----Cc
Confidence 9999998886532100 11222211 2233 34688887763 22666666666665543211 11
Q ss_pred CCCC-ceeE-EeeCCCEEEEEeCCCCeEEEEECCCC
Q 015511 340 GEFD-DVFA-SSGTDDLIYIQSYGAPSLLVYDMNLK 373 (405)
Q Consensus 340 ~~~~-~~~~-~~~~~~~i~~~~~~~~~~~~Yd~~~~ 373 (405)
.... ..-+ +...++.+|+.. ...+..||++.-
T Consensus 624 ~~~~f~~~~~~~~~~G~l~~g~--~~Gl~~f~p~~~ 657 (781)
T 3v9f_A 624 PQGSFISGCVTKDHNGLIYFGS--INGLCFFNPDIA 657 (781)
T ss_dssp CSSCEEEEEEEECTTSCEEEEE--TTEEEEECSCCG
T ss_pred cccccccCceEECCCCEEEEEC--CCceEEEChhhc
Confidence 0000 0112 233466677754 346888887653
No 70
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=83.68 E-value=21 Score=30.93 Aligned_cols=111 Identities=12% Similarity=0.088 Sum_probs=57.8
Q ss_pred cEEEEEECCC-CcchhhhcccccccCCccccCceE-EeCCc-EEEEEccccccccCccceEEEEEEeC--ceeEE---Ee
Q 015511 258 HGLISFNLSS-RSSHALLIKSFIPVPCALTCGRLM-NLKEK-LVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQE---VA 329 (405)
Q Consensus 258 ~~i~~fD~~~-~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~---v~ 329 (405)
..+..||+.+ .+....... ....+.......+. .-+|+ |++.+.. ...+.+|+++. ++++. +.
T Consensus 151 ~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pdg~~l~~~~~~--------~~~i~~~~~~~~~g~~~~~~~~~ 221 (343)
T 1ri6_A 151 DRICLFTVSDDGHLVAQDPA-EVTTVEGAGPRHMVFHPNEQYAYCVNEL--------NSSVDVWELKDPHGNIECVQTLD 221 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEE-EEECSTTCCEEEEEECTTSSEEEEEETT--------TTEEEEEESSCTTSCCEEEEEEE
T ss_pred CEEEEEEecCCCceeeeccc-ccccCCCCCcceEEECCCCCEEEEEeCC--------CCEEEEEEecCCCCcEEEEeecc
Confidence 4799999977 543211000 11112111111222 23565 5555432 24699999964 44443 33
Q ss_pred ccChhHHhccCCCCc--eeEEeeCCCEEEEEeCCCCeEEEEECC--CCcEEEccCC
Q 015511 330 RMPHKFFQGFGEFDD--VFASSGTDDLIYIQSYGAPSLLVYDMN--LKQWRWSHKC 381 (405)
Q Consensus 330 ~i~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~Yd~~--~~~w~~l~~~ 381 (405)
.++.. +..... .+++...|+.+|+....+..+.+||++ +++++.+...
T Consensus 222 ~~~~~----~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~ 273 (343)
T 1ri6_A 222 MMPEN----FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ 273 (343)
T ss_dssp CSCTT----CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred ccCcc----ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee
Confidence 33321 111111 234456688888877667789999998 6667666443
No 71
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=83.66 E-value=18 Score=34.72 Aligned_cols=194 Identities=10% Similarity=0.040 Sum_probs=96.2
Q ss_pred ecCceEEEEeCCCCceEEEEeCcccceee-ccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEE
Q 015511 133 SSYGLVCFMDNDSRSELYVCNPISKSWKK-LEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIY 211 (405)
Q Consensus 133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy 211 (405)
+.+|.+++.+.. ...+.++|..|++... ++.- . ....+.+++.. .| +++.+.. -.+.+|
T Consensus 146 ~p~~~~~vs~~~-d~~V~v~D~~t~~~~~~i~~g---~----~~~~v~~spdg-~~-l~v~~~d----------~~V~v~ 205 (543)
T 1nir_A 146 DLPNLFSVTLRD-AGQIALVDGDSKKIVKVIDTG---Y----AVHISRMSASG-RY-LLVIGRD----------ARIDMI 205 (543)
T ss_dssp CGGGEEEEEEGG-GTEEEEEETTTCCEEEEEECS---T----TEEEEEECTTS-CE-EEEEETT----------SEEEEE
T ss_pred CCCCEEEEEEcC-CCeEEEEECCCceEEEEEecC---c----ccceEEECCCC-CE-EEEECCC----------CeEEEE
Confidence 345666665532 4789999999987654 3311 1 12244455533 23 4443321 278899
Q ss_pred eC--CCCCcccccccccccccCCCccEEE------CcE-EEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccC
Q 015511 212 DS--DTMMWVTSWKEVLTGWRAGDESIIC------DGV-LYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVP 282 (405)
Q Consensus 212 ~s--~~~~W~~~~~~~~~~~~~~~~~v~~------~g~-iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p 282 (405)
|. .+++-.. .+.... ....+.+ +|+ +|+.+... ..+..+|..+.+-.. .++.+
T Consensus 206 D~~~~t~~~~~---~i~~g~--~p~~va~sp~~~~dg~~l~v~~~~~--------~~v~v~D~~t~~~~~-----~i~~~ 267 (543)
T 1nir_A 206 DLWAKEPTKVA---EIKIGI--EARSVESSKFKGYEDRYTIAGAYWP--------PQFAIMDGETLEPKQ-----IVSTR 267 (543)
T ss_dssp ETTSSSCEEEE---EEECCS--EEEEEEECCSTTCTTTEEEEEEEES--------SEEEEEETTTCCEEE-----EEECC
T ss_pred ECcCCCCcEEE---EEecCC--CcceEEeCCCcCCCCCEEEEEEccC--------CeEEEEeccccccce-----eeccc
Confidence 98 4433211 111110 0112222 454 55544322 478889988765321 12221
Q ss_pred Cc--------cc--cCceEEe-CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeC
Q 015511 283 CA--------LT--CGRLMNL-KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGT 351 (405)
Q Consensus 283 ~~--------~~--~~~l~~~-~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~ 351 (405)
.. .. -..++.. +|..+++.... ...+.+|++.+.+-..+..++.. ....-+++...
T Consensus 268 g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-------~g~i~vvd~~~~~~l~~~~i~~~------~~~~~~~~spd 334 (543)
T 1nir_A 268 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-------TGKVLLVNYKDIDNLTVTSIGAA------PFLHDGGWDSS 334 (543)
T ss_dssp EECSSSCCEESCCCEEEEEECSSSSEEEEEETT-------TTEEEEEECTTSSSCEEEEEECC------SSCCCEEECTT
T ss_pred CcccCccccccCCceEEEEECCCCCEEEEEECC-------CCeEEEEEecCCCcceeEEeccC------cCccCceECCC
Confidence 10 00 0122222 35555554321 34577787765332222233211 01122455667
Q ss_pred CCEEEEEeCCCCeEEEEECCCCcEEE
Q 015511 352 DDLIYIQSYGAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 352 ~~~i~~~~~~~~~~~~Yd~~~~~w~~ 377 (405)
|+.+|+....+..+.++|+++++...
T Consensus 335 g~~l~va~~~~~~v~v~D~~tg~l~~ 360 (543)
T 1nir_A 335 HRYFMTAANNSNKVAVIDSKDRRLSA 360 (543)
T ss_dssp SCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred CCEEEEEecCCCeEEEEECCCCeEEE
Confidence 88888876556789999999997654
No 72
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=83.66 E-value=20 Score=30.74 Aligned_cols=189 Identities=10% Similarity=-0.006 Sum_probs=85.0
Q ss_pred cCceEEEEeCCCCceEEEEeCcccceee-ccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015511 134 SYGLVCFMDNDSRSELYVCNPISKSWKK-LEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD 212 (405)
Q Consensus 134 ~~Gll~~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~ 212 (405)
.-|-+++.+ .....++++|+.|++..- ++.. .. .... .....+.. ++++.. ...+..||
T Consensus 3 ~~~~~lv~~-~~~~~v~~~d~~tG~~~w~~~~~-~~--~~~~--~~~~~pdG---~ilvs~-----------~~~V~~~d 62 (276)
T 3no2_A 3 SPQHLLVGG-SGWNKIAIINKDTKEIVWEYPLE-KG--WECN--SVAATKAG---EILFSY-----------SKGAKMIT 62 (276)
T ss_dssp CCCEEEEEC-TTCSEEEEEETTTTEEEEEEECC-TT--CCCC--EEEECTTS---CEEEEC-----------BSEEEEEC
T ss_pred CCCcEEEee-CCCCEEEEEECCCCeEEEEeCCC-cc--CCCc--CeEECCCC---CEEEeC-----------CCCEEEEC
Confidence 334444443 235788999998886543 2221 10 0111 22233433 234422 12577888
Q ss_pred C-CCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc-chhhhccccc-ccCCccccC-
Q 015511 213 S-DTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS-SHALLIKSFI-PVPCALTCG- 288 (405)
Q Consensus 213 s-~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~-w~~~~~~~~~-~~p~~~~~~- 288 (405)
. ++-.|+..... .. .........+|.+++.... ....++.+|+..+. |+. ..- ..+......
T Consensus 63 ~~G~~~W~~~~~~-~~--~~~~~~~~~dG~~lv~~~~-------~~~~v~~vd~~Gk~l~~~----~~~~~~~~~~~~~~ 128 (276)
T 3no2_A 63 RDGRELWNIAAPA-GC--EMQTARILPDGNALVAWCG-------HPSTILEVNMKGEVLSKT----EFETGIERPHAQFR 128 (276)
T ss_dssp TTSCEEEEEECCT-TC--EEEEEEECTTSCEEEEEES-------TTEEEEEECTTSCEEEEE----EECCSCSSGGGSCS
T ss_pred CCCCEEEEEcCCC-Cc--cccccEECCCCCEEEEecC-------CCCEEEEEeCCCCEEEEE----eccCCCCccccccc
Confidence 7 23346553210 00 0001122337777666432 02478888874432 221 000 000000111
Q ss_pred c-eEEeCCcEEEEEccccccccCccceEEEEEEeC-ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEE
Q 015511 289 R-LMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG-KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLL 366 (405)
Q Consensus 289 ~-l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~-~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 366 (405)
. ....+|.++++... ...+.+|+.+. ..|+.-.. .. .........|++++... ....++
T Consensus 129 ~v~~~~~G~~lv~~~~--------~~~v~~~d~~G~~~w~~~~~--~~--------~~~~~~~~~g~~~v~~~-~~~~v~ 189 (276)
T 3no2_A 129 QINKNKKGNYLVPLFA--------TSEVREIAPNGQLLNSVKLS--GT--------PFSSAFLDNGDCLVACG-DAHCFV 189 (276)
T ss_dssp CCEECTTSCEEEEETT--------TTEEEEECTTSCEEEEEECS--SC--------CCEEEECTTSCEEEECB-TTSEEE
T ss_pred CceECCCCCEEEEecC--------CCEEEEECCCCCEEEEEECC--CC--------ccceeEcCCCCEEEEeC-CCCeEE
Confidence 1 12446777766542 23467776662 34665332 10 01112233455554443 345799
Q ss_pred EEECCCCcE
Q 015511 367 VYDMNLKQW 375 (405)
Q Consensus 367 ~Yd~~~~~w 375 (405)
.+|+++++.
T Consensus 190 ~~d~~tG~~ 198 (276)
T 3no2_A 190 QLNLESNRI 198 (276)
T ss_dssp EECTTTCCE
T ss_pred EEeCcCCcE
Confidence 999997754
No 73
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=83.65 E-value=19 Score=30.49 Aligned_cols=215 Identities=10% Similarity=-0.006 Sum_probs=105.0
Q ss_pred eeEEecCCCCeeeeccCCCCCCC-CeEEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCC
Q 015511 105 IGYAYDPILRKWYGIELPCIETS-NWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRV 183 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~p~~~~~-~~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~ 183 (405)
....+|+. ++...+.+|..... ..+....+|.+++.... ...++++|+ +++.......... .....+..++.
T Consensus 79 ~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~d~-~g~~~~~~~~~~~----~~~~~i~~~~~ 151 (299)
T 2z2n_A 79 KIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMN-GNRIGRITD-DGKIREYELPNKG----SYPSFITLGSD 151 (299)
T ss_dssp EEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETT-TTEEEEECT-TCCEEEEECSSTT----CCEEEEEECTT
T ss_pred eEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecC-CceEEEECC-CCCEEEecCCCCC----CCCceEEEcCC
Confidence 45567765 44444444421111 12333456777776532 468899999 7776655322111 12235556654
Q ss_pred CCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEE
Q 015511 184 SHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLI 261 (405)
Q Consensus 184 ~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~ 261 (405)
. ++++.... ...+.+|+. ++....... +.. ......+.+ +|.+|+.... ...|.
T Consensus 152 g---~l~v~~~~---------~~~i~~~~~-~g~~~~~~~--~~~-~~~~~~i~~~~~g~l~v~~~~--------~~~i~ 207 (299)
T 2z2n_A 152 N---ALWFTENQ---------NNAIGRITE-SGDITEFKI--PTP-ASGPVGITKGNDDALWFVEII--------GNKIG 207 (299)
T ss_dssp S---CEEEEETT---------TTEEEEECT-TCCEEEEEC--SST-TCCEEEEEECTTSSEEEEETT--------TTEEE
T ss_pred C---CEEEEeCC---------CCEEEEEcC-CCcEEEeeC--CCC-CCcceeEEECCCCCEEEEccC--------CceEE
Confidence 3 34543311 126778887 666543211 111 111123344 5787766421 24799
Q ss_pred EEECCCCcchhhhcccccccCCcccc-CceEE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhcc
Q 015511 262 SFNLSSRSSHALLIKSFIPVPCALTC-GRLMN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGF 339 (405)
Q Consensus 262 ~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~ 339 (405)
.||+ +.++.. ...+..... ..+.. .+|+|++.... ...+.+|+. +.+...+. ++..
T Consensus 208 ~~~~-~g~~~~------~~~~~~~~~~~~i~~~~~g~l~v~~~~--------~~~i~~~d~-~g~~~~~~-~~~~----- 265 (299)
T 2z2n_A 208 RITT-SGEITE------FKIPTPNARPHAITAGAGIDLWFTEWG--------ANKIGRLTS-NNIIEEYP-IQIK----- 265 (299)
T ss_dssp EECT-TCCEEE------EECSSTTCCEEEEEECSTTCEEEEETT--------TTEEEEEET-TTEEEEEE-CSSS-----
T ss_pred EECC-CCcEEE------EECCCCCCCceeEEECCCCCEEEeccC--------CceEEEECC-CCceEEEe-CCCC-----
Confidence 9999 665432 222321111 12333 36888877632 234666665 33333221 2211
Q ss_pred CCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcE
Q 015511 340 GEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQW 375 (405)
Q Consensus 340 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w 375 (405)
...+.++...++.+|+... ...+..||+++++.
T Consensus 266 --~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~~~~~ 298 (299)
T 2z2n_A 266 --SAEPHGICFDGETIWFAME-CDKIGKLTLIKDNM 298 (299)
T ss_dssp --SCCEEEEEECSSCEEEEET-TTEEEEEEEC----
T ss_pred --CCccceEEecCCCEEEEec-CCcEEEEEcCcccC
Confidence 0122232226677888753 46899999988764
No 74
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=83.36 E-value=23 Score=31.16 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=38.4
Q ss_pred CCcEEEEEccccccccCccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEE--eeCC--CEEEEEeCCCCeEEE
Q 015511 294 KEKLVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFAS--SGTD--DLIYIQSYGAPSLLV 367 (405)
Q Consensus 294 ~G~L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~--~~~~--~~i~~~~~~~~~~~~ 367 (405)
++++++++..+ ..+.+|++.. ..+..+..+... ...+.++ ...+ +.+++....+..+.+
T Consensus 171 ~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~h-------~~~v~~~~~sp~~~~~~~l~s~~~dg~i~i 235 (379)
T 3jrp_A 171 ESRKFVTGGAD--------NLVKIWKYNSDAQTYVLESTLEGH-------SDWVRDVAWSPTVLLRSYLASVSQDRTCII 235 (379)
T ss_dssp TTCEEEEEETT--------SCEEEEEEETTTTEEEEEEEECCC-------SSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred CCCEEEEEeCC--------CeEEEEEecCCCcceeeEEEEecc-------cCcEeEEEECCCCCCCCeEEEEeCCCEEEE
Confidence 46777666532 3599999985 356665554321 1123232 3342 344444445778999
Q ss_pred EECCCCc
Q 015511 368 YDMNLKQ 374 (405)
Q Consensus 368 Yd~~~~~ 374 (405)
||+++++
T Consensus 236 wd~~~~~ 242 (379)
T 3jrp_A 236 WTQDNEQ 242 (379)
T ss_dssp EEESSTT
T ss_pred EeCCCCC
Confidence 9999873
No 75
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=83.20 E-value=19 Score=30.12 Aligned_cols=194 Identities=9% Similarity=0.021 Sum_probs=92.9
Q ss_pred EEecCceEEE-EeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEE
Q 015511 131 IASSYGLVCF-MDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIH 209 (405)
Q Consensus 131 ~~s~~Gll~~-~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~ 209 (405)
....+|.+++ .+. ....++++|+.++....++.... ....++..++.. ++++... ...+.
T Consensus 30 ~~~~~g~l~v~~~~-~~~~i~~~~~~~~~~~~~~~~~~-----~~p~~i~~~~~g---~l~v~~~----------~~~i~ 90 (270)
T 1rwi_B 30 AVDSAGNVYVTSEG-MYGRVVKLATGSTGTTVLPFNGL-----YQPQGLAVDGAG---TVYVTDF----------NNRVV 90 (270)
T ss_dssp EECTTCCEEEEECS-SSCEEEEECC-----EECCCCSC-----CSCCCEEECTTC---CEEEEET----------TTEEE
T ss_pred EECCCCCEEEEccC-CCCcEEEecCCCcccceEeeCCc-----CCcceeEECCCC---CEEEEcC----------CCEEE
Confidence 3345566666 432 24678899998877655542211 112345556543 2555432 12678
Q ss_pred EEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc
Q 015511 210 IYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC 287 (405)
Q Consensus 210 vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~ 287 (405)
+|+...+.-...... .. .....+.+ +|.+|+.... ...|..||..+..... .........
T Consensus 91 ~~d~~~~~~~~~~~~---~~-~~p~~i~~~~~g~l~v~~~~--------~~~i~~~~~~~~~~~~------~~~~~~~~p 152 (270)
T 1rwi_B 91 TLAAGSNNQTVLPFD---GL-NYPEGLAVDTQGAVYVADRG--------NNRVVKLAAGSKTQTV------LPFTGLNDP 152 (270)
T ss_dssp EECTTCSCCEECCCC---SC-SSEEEEEECTTCCEEEEEGG--------GTEEEEECTTCCSCEE------CCCCSCCSC
T ss_pred EEeCCCceEeeeecC---Cc-CCCcceEECCCCCEEEEECC--------CCEEEEEECCCceeEe------eccccCCCc
Confidence 888765543322110 00 11123333 6788876532 2478888876554221 111110111
Q ss_pred CceEEe-CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEee-CCCEEEEEeCCCCeE
Q 015511 288 GRLMNL-KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSG-TDDLIYIQSYGAPSL 365 (405)
Q Consensus 288 ~~l~~~-~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~ 365 (405)
..++.. +|+||+.... ...+.+|.++...-... .... + ..+.++.. .++.+|+.......+
T Consensus 153 ~~i~~~~~g~l~v~~~~--------~~~i~~~~~~~~~~~~~-~~~~-----~---~~p~~i~~d~~g~l~v~~~~~~~v 215 (270)
T 1rwi_B 153 DGVAVDNSGNVYVTDTD--------NNRVVKLEAESNNQVVL-PFTD-----I---TAPWGIAVDEAGTVYVTEHNTNQV 215 (270)
T ss_dssp CCEEECTTCCEEEEEGG--------GTEEEEECTTTCCEEEC-CCSS-----C---CSEEEEEECTTCCEEEEETTTSCE
T ss_pred eeEEEeCCCCEEEEECC--------CCEEEEEecCCCceEee-cccC-----C---CCceEEEECCCCCEEEEECCCCcE
Confidence 234433 6888887642 23466666554332111 1100 0 12233322 234788877666789
Q ss_pred EEEECCCCcEEEc
Q 015511 366 LVYDMNLKQWRWS 378 (405)
Q Consensus 366 ~~Yd~~~~~w~~l 378 (405)
..||++++.-...
T Consensus 216 ~~~~~~~~~~~~~ 228 (270)
T 1rwi_B 216 VKLLAGSTTSTVL 228 (270)
T ss_dssp EEECTTCSCCEEC
T ss_pred EEEcCCCCcceee
Confidence 9999988765443
No 76
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=80.73 E-value=25 Score=29.69 Aligned_cols=71 Identities=14% Similarity=0.033 Sum_probs=36.3
Q ss_pred eEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE---CcEEEeeEEecCCC
Q 015511 176 LSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC---DGVLYFLIYATGGG 252 (405)
Q Consensus 176 ~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~---~g~iy~l~~~~~~~ 252 (405)
.++.+|+..+ .|++.... ...+.+|+...+.-.... .... .....+.+ +|.+||....
T Consensus 39 ~gi~~d~~~~--~ly~~d~~---------~~~I~~~~~~g~~~~~~~---~~~~-~~p~~ia~d~~~~~lyv~d~~---- 99 (267)
T 1npe_A 39 IGLAFDCVDK--VVYWTDIS---------EPSIGRASLHGGEPTTII---RQDL-GSPEGIALDHLGRTIFWTDSQ---- 99 (267)
T ss_dssp EEEEEETTTT--EEEEEETT---------TTEEEEEESSSCCCEEEE---CTTC-CCEEEEEEETTTTEEEEEETT----
T ss_pred EEEEEecCCC--EEEEEECC---------CCEEEEEecCCCCcEEEE---ECCC-CCccEEEEEecCCeEEEEECC----
Confidence 4666665322 45554421 236788887544321110 0011 11123433 5899998632
Q ss_pred CCCCccEEEEEECCCCc
Q 015511 253 APENRHGLISFNLSSRS 269 (405)
Q Consensus 253 ~~~~~~~i~~fD~~~~~ 269 (405)
...|..+|+....
T Consensus 100 ----~~~I~~~~~~g~~ 112 (267)
T 1npe_A 100 ----LDRIEVAKMDGTQ 112 (267)
T ss_dssp ----TTEEEEEETTSCS
T ss_pred ----CCEEEEEEcCCCC
Confidence 2579999987543
No 77
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=80.32 E-value=12 Score=37.03 Aligned_cols=116 Identities=15% Similarity=0.141 Sum_probs=63.7
Q ss_pred CccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--chhhhcccccccCCc--------cccCceEEeCCcEEEEEc
Q 015511 233 DESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SHALLIKSFIPVPCA--------LTCGRLMNLKEKLVMVGG 302 (405)
Q Consensus 233 ~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~--------~~~~~l~~~~G~L~~v~~ 302 (405)
..+++.+|++|+.... ..++++|..+.+ |+. . ...+.. .....++..+|+||+.+.
T Consensus 60 ~~P~v~~g~vyv~~~~---------~~v~AlD~~tG~~~W~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~ 125 (668)
T 1kv9_A 60 ATPLFHDGVIYTSMSW---------SRVIAVDAASGKELWRY----D-PEVAKVKARTSCCDAVNRGVALWGDKVYVGTL 125 (668)
T ss_dssp CCCEEETTEEEEEEGG---------GEEEEEETTTCCEEEEE----C-CCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT
T ss_pred cCCEEECCEEEEECCC---------CeEEEEECCCChhceEE----C-CCCCccccccccccCCccceEEECCEEEEEcC
Confidence 3578899999998642 479999987655 542 1 111110 112345667888887653
Q ss_pred cccccccCccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-----CCeEEEEECCCCc-
Q 015511 303 IGKQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-----APSLLVYDMNLKQ- 374 (405)
Q Consensus 303 ~~~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~Yd~~~~~- 374 (405)
. ..+..++.++ ..|+.-..-+... ....... ...++.||+.... ...+++||.++++
T Consensus 126 d---------g~l~alD~~tG~~~W~~~~~~~~~~---~~~~~~P---~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~ 190 (668)
T 1kv9_A 126 D---------GRLIALDAKTGKAIWSQQTTDPAKP---YSITGAP---RVVKGKVIIGNGGAEYGVRGFVSAYDADTGKL 190 (668)
T ss_dssp T---------SEEEEEETTTCCEEEEEECSCTTSS---CBCCSCC---EEETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred C---------CEEEEEECCCCCEeeeeccCCCCCc---ceecCCC---EEECCEEEEeCCCCCcCCCCEEEEEECCCCcE
Confidence 1 2244444443 3687643211100 0000011 1136788875432 3689999999886
Q ss_pred -EEE
Q 015511 375 -WRW 377 (405)
Q Consensus 375 -w~~ 377 (405)
|+.
T Consensus 191 ~W~~ 194 (668)
T 1kv9_A 191 AWRF 194 (668)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 544
No 78
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=79.75 E-value=29 Score=31.84 Aligned_cols=99 Identities=10% Similarity=-0.036 Sum_probs=46.5
Q ss_pred ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccccc
Q 015511 147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVL 226 (405)
Q Consensus 147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~ 226 (405)
+.+.|||..+++...+-.... + .-....+.+.|....+ |+..+. .-.+.+||.+++.-......
T Consensus 142 g~i~lWd~~~~~~~~~~~~~g-H--~~~V~~l~f~p~~~~~-l~s~s~----------D~~v~iwd~~~~~~~~~~~~-- 205 (435)
T 4e54_B 142 GDIMLWNFGIKDKPTFIKGIG-A--GGSITGLKFNPLNTNQ-FYASSM----------EGTTRLQDFKGNILRVFASS-- 205 (435)
T ss_dssp SCEEEECSSCCSCCEEECCCS-S--SCCCCEEEECSSCTTE-EEEECS----------SSCEEEEETTSCEEEEEECC--
T ss_pred CEEEEEECCCCCceeEEEccC-C--CCCEEEEEEeCCCCCE-EEEEeC----------CCEEEEeeccCCceeEEecc--
Confidence 567888988876544322211 1 1122345555543343 333221 12678888766544332110
Q ss_pred ccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCc
Q 015511 227 TGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRS 269 (405)
Q Consensus 227 ~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~ 269 (405)
........++.+ +|.+.+.+... ..|..+|+....
T Consensus 206 ~~~~~~~~~~~~~~~~~~l~~g~~d--------g~i~~wd~~~~~ 242 (435)
T 4e54_B 206 DTINIWFCSLDVSASSRMVVTGDNV--------GNVILLNMDGKE 242 (435)
T ss_dssp SSCSCCCCCEEEETTTTEEEEECSS--------SBEEEEESSSCB
T ss_pred CCCCccEEEEEECCCCCEEEEEeCC--------CcEeeeccCcce
Confidence 000111122222 56555555322 368889987554
No 79
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=79.66 E-value=16 Score=35.45 Aligned_cols=116 Identities=10% Similarity=0.105 Sum_probs=62.6
Q ss_pred CccEEECcEEEeeEEecCCCCCCCccEEEEEEC-CCCc--chhhhcccccccCCc--------cccCceEEeCCcEEEEE
Q 015511 233 DESIICDGVLYFLIYATGGGAPENRHGLISFNL-SSRS--SHALLIKSFIPVPCA--------LTCGRLMNLKEKLVMVG 301 (405)
Q Consensus 233 ~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~-~~~~--w~~~~~~~~~~~p~~--------~~~~~l~~~~G~L~~v~ 301 (405)
..+++.+|.+|+.... ...+.++|. .+.+ |+. . ...+.. .....++..+|+||+.+
T Consensus 56 ~~P~v~~g~vyv~~~~--------~~~v~AlD~~~tG~~~W~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~ 122 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAF--------PNNTYALNLNDPGKIVWQH----K-PKQDASTKAVMCCDVVDRGLAYGAGQIVKKQ 122 (571)
T ss_dssp SCCEEETTEEEEECST--------TTCEEEEETTCTTSEEEEE----C-CCCCGGGGGGCTTCSCCCCCEEETTEEEEEC
T ss_pred cccEEECCEEEEEeCC--------CCEEEEEeCCCCccEEEEE----c-CCCCccccccccccccccccEEECCEEEEEe
Confidence 3578889999998631 247999999 6654 552 1 111100 11234567788888775
Q ss_pred ccccccccCccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-----CCeEEEEECCCCc
Q 015511 302 GIGKQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-----APSLLVYDMNLKQ 374 (405)
Q Consensus 302 ~~~~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~Yd~~~~~ 374 (405)
.. ..+..++.++ ..|+.-..-+. .......... ..++.||+.... ...+++||.++++
T Consensus 123 ~d---------g~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~P~---v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 123 AN---------GHLLALDAKTGKINWEVEVCDPK---VGSTLTQAPF---VAKDTVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp TT---------SEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCE---EETTEEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred CC---------CEEEEEECCCCCEEEEecCCCCC---ccceeccCCE---EECCEEEEEecCCccCCCCEEEEEECCCCc
Confidence 31 2244444433 36875321110 0010000111 136788886542 5689999999885
Q ss_pred EE
Q 015511 375 WR 376 (405)
Q Consensus 375 w~ 376 (405)
-.
T Consensus 188 ~~ 189 (571)
T 2ad6_A 188 LK 189 (571)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 80
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=79.43 E-value=30 Score=29.80 Aligned_cols=179 Identities=12% Similarity=0.047 Sum_probs=85.5
Q ss_pred CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccc
Q 015511 146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEV 225 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~ 225 (405)
...+.+||..+++........... .....+.+.+.. .+ +++++. .-.+.+|+..++.-...-
T Consensus 118 d~~i~~~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~~-~~--l~~~~~---------dg~v~~~d~~~~~~~~~~--- 179 (337)
T 1gxr_A 118 ASTLSIWDLAAPTPRIKAELTSSA---PACYALAISPDS-KV--CFSCCS---------DGNIAVWDLHNQTLVRQF--- 179 (337)
T ss_dssp SSEEEEEECCCC--EEEEEEECSS---SCEEEEEECTTS-SE--EEEEET---------TSCEEEEETTTTEEEEEE---
T ss_pred CCcEEEEECCCCCcceeeecccCC---CceEEEEECCCC-CE--EEEEeC---------CCcEEEEeCCCCceeeee---
Confidence 478999999888744332221111 112344454432 22 333321 126888988765432211
Q ss_pred cccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceE-EeCCcEEEEEc
Q 015511 226 LTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEKLVMVGG 302 (405)
Q Consensus 226 ~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~L~~v~~ 302 (405)
.........+.+ +|...+.+... ..+..||+.+.+-.. ....+.. ...+. .-+|++++++.
T Consensus 180 -~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~-----~~~~~~~--v~~~~~s~~~~~l~~~~ 243 (337)
T 1gxr_A 180 -QGHTDGASCIDISNDGTKLWTGGLD--------NTVRSWDLREGRQLQ-----QHDFTSQ--IFSLGYCPTGEWLAVGM 243 (337)
T ss_dssp -CCCSSCEEEEEECTTSSEEEEEETT--------SEEEEEETTTTEEEE-----EEECSSC--EEEEEECTTSSEEEEEE
T ss_pred -ecccCceEEEEECCCCCEEEEEecC--------CcEEEEECCCCceEe-----eecCCCc--eEEEEECCCCCEEEEEc
Confidence 001111122222 55555544322 479999998765221 1111111 11122 23566666665
Q ss_pred cccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCcee--EEeeCCCEEEEEeCCCCeEEEEECCCCcEEE
Q 015511 303 IGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVF--ASSGTDDLIYIQSYGAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 303 ~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~ 377 (405)
.. ..+.+|++...+=.....- ...+. .+...++.++... .+..+.+||+++++-..
T Consensus 244 ~~--------~~i~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~-~dg~i~~~~~~~~~~~~ 301 (337)
T 1gxr_A 244 ES--------SNVEVLHVNKPDKYQLHLH----------ESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGASIF 301 (337)
T ss_dssp TT--------SCEEEEETTSSCEEEECCC----------SSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEEE
T ss_pred CC--------CcEEEEECCCCCeEEEcCC----------ccceeEEEECCCCCEEEEec-CCCcEEEEECCCCeEEE
Confidence 32 3589998886542211110 11222 2334566655543 46789999999886553
No 81
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=78.85 E-value=59 Score=32.92 Aligned_cols=189 Identities=10% Similarity=0.105 Sum_probs=96.1
Q ss_pred cCceEEEEeCCCCceEEEEeCccc----ceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEE
Q 015511 134 SYGLVCFMDNDSRSELYVCNPISK----SWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIH 209 (405)
Q Consensus 134 ~~Gll~~~~~~~~~~~~v~NP~T~----~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~ 209 (405)
..|.|++.+.. .+.++.+++-.. ....+-.. ......++++|...+ +||+.... ...|.
T Consensus 434 ~~~~lY~sD~~-~~~I~~~~l~g~~~~~~~~~vi~~-----~l~~P~GLAvD~~~~--~LY~tD~~---------~~~I~ 496 (791)
T 3m0c_C 434 ASNRIYWSDLS-QRMICSTQLDRAHGVSSYDTVISR-----DIQAPDGLAVDWIHS--NIYWTDSV---------LGTVS 496 (791)
T ss_dssp TTTEEEEEETT-TTEEEEEEC--------CEEEECS-----SCSCCCEEEEETTTT--EEEEEETT---------TTEEE
T ss_pred cCCeeEEeecc-ceeEEEEeccCCCCCcceeEEEec-----CCCCcceeeeeecCC--cEEEEecC---------CCeEE
Confidence 35677766543 355666666542 12222110 001224677775432 46665421 23778
Q ss_pred EEeCCCCCcccccccccccccCCCccEEE---CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccc
Q 015511 210 IYDSDTMMWVTSWKEVLTGWRAGDESIIC---DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALT 286 (405)
Q Consensus 210 vy~s~~~~W~~~~~~~~~~~~~~~~~v~~---~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~ 286 (405)
+++.....-+.... .......++.+ +|.|||.... ....|..+++....-.. ++. ....
T Consensus 497 v~~ldG~~~~~l~~----~~l~~P~gIaVDp~~g~LYwtD~g-------~~~~I~~~~~dG~~~~~-----lv~--~~l~ 558 (791)
T 3m0c_C 497 VADTKGVKRKTLFR----ENGSKPRAIVVDPVHGFMYWTDWG-------TPAKIKKGGLNGVDIYS-----LVT--ENIQ 558 (791)
T ss_dssp EEETTSSSEEEEEE----CTTCCEEEEEEETTTTEEEEEECS-------SSCEEEEEETTSCCEEE-----EEC--SSCS
T ss_pred EEeCCCCeEEEEEe----CCCCCcceEEEecCCCCEEEecCC-------CCCeEEEEecCCCceEE-----EEe--CCCC
Confidence 88875433222211 00111234555 5899998631 12479999987544211 111 1111
Q ss_pred c-CceEEe--CCcEEEEEccccccccCccceEEEEEEeCc-eeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCC
Q 015511 287 C-GRLMNL--KEKLVMVGGIGKQDRPDIIKGIGIWVLNGK-EWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGA 362 (405)
Q Consensus 287 ~-~~l~~~--~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~-~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 362 (405)
. ..|++- +|+||++... ...|.+..++.. ..+.+.. ...+ ...+++...++.||+.....
T Consensus 559 ~P~GLavD~~~~~LYwaD~~--------~~~I~~~d~dG~~~~~v~~~-~~~l-------~~P~glav~~~~lYwtD~~~ 622 (791)
T 3m0c_C 559 WPNGITLDLLSGRLYWVDSK--------LHSISSIDVNGGNRKTILED-EKRL-------AHPFSLAVFEDKVFWTDIIN 622 (791)
T ss_dssp CEEEEEEETTTTEEEEEETT--------TTEEEEEETTSCSCEEEEEC-TTTT-------SSEEEEEEETTEEEEEETTT
T ss_pred CceEEEEecCCCeEEEEeCC--------CCcEEEEecCCCceEEEecC-CCcc-------CCCCEEEEeCCEEEEEECCC
Confidence 1 134443 6899999752 245777776643 3333321 1111 13456655778999987667
Q ss_pred CeEEEEECCCC
Q 015511 363 PSLLVYDMNLK 373 (405)
Q Consensus 363 ~~~~~Yd~~~~ 373 (405)
..|.++|..++
T Consensus 623 ~~I~~~dk~tG 633 (791)
T 3m0c_C 623 EAIFSANRLTG 633 (791)
T ss_dssp TEEEEEETTTC
T ss_pred CEEEEEeCCCC
Confidence 78999987665
No 82
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=78.37 E-value=19 Score=31.97 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=28.5
Q ss_pred CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCC-ccc
Q 015511 146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMM-WVT 220 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~-W~~ 220 (405)
...+.+||..++.+..+..+.. + ......+.+.+.. .+ ++.++. ...+.+|+..++. |..
T Consensus 32 d~~i~iw~~~~~~~~~~~~~~~-h--~~~v~~~~~s~~~-~~--l~s~s~---------d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 32 TNQVELYEQDGNGWKHARTFSD-H--DKIVTCVDWAPKS-NR--IVTCSQ---------DRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp SSCBCEEEEETTEEEECCCBCC-C--SSCEEEEEECTTT-CC--EEEEET---------TSSEEEC------CCCC
T ss_pred CCEEEEEEccCCceEEEEEEec-C--CceEEEEEEeCCC-CE--EEEEeC---------CCeEEEEEcCCCCceee
Confidence 4678899999887665554432 1 1123345555543 22 333321 1268888887776 544
No 83
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=77.99 E-value=12 Score=37.22 Aligned_cols=117 Identities=12% Similarity=0.136 Sum_probs=64.6
Q ss_pred CccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--chhhhcccccccCC--------ccccCceEEeCCcEEEEEc
Q 015511 233 DESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SHALLIKSFIPVPC--------ALTCGRLMNLKEKLVMVGG 302 (405)
Q Consensus 233 ~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~--------~~~~~~l~~~~G~L~~v~~ 302 (405)
..+++.+|.+|+.... ..|.++|..+.+ |+. . ...+. ......++..+|+||+.+.
T Consensus 71 ~~P~v~~g~vyv~~~~---------~~v~AlD~~tG~~~W~~----~-~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~ 136 (677)
T 1kb0_A 71 ATPVVVDGIMYVSASW---------SVVHAIDTRTGNRIWTY----D-PQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW 136 (677)
T ss_dssp CCCEEETTEEEEECGG---------GCEEEEETTTTEEEEEE----C-CCCCGGGGGGSSSCSCCCCCEEETTEEEEECT
T ss_pred eCCEEECCEEEEECCC---------CeEEEEECCCCcEEEEE----c-CCCCccccccccccCCCCCceEECCEEEEEcC
Confidence 3578899999998632 479999998755 542 1 11111 0123446677888887653
Q ss_pred cccccccCccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-----CCeEEEEECCCCc-
Q 015511 303 IGKQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-----APSLLVYDMNLKQ- 374 (405)
Q Consensus 303 ~~~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~Yd~~~~~- 374 (405)
. ..+..++.++ ..|+.-...... ......... ...++.||+.... ...+.+||.++++
T Consensus 137 d---------g~l~alD~~tG~~~W~~~~~~~~~--~~~~~~~~p---~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~ 202 (677)
T 1kb0_A 137 D---------GRLIALDAATGKEVWHQNTFEGQK--GSLTITGAP---RVFKGKVIIGNGGAEYGVRGYITAYDAETGER 202 (677)
T ss_dssp T---------SEEEEEETTTCCEEEEEETTTTCC--SSCBCCSCC---EEETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred C---------CEEEEEECCCCCEEeeecCCcCcC--cCcccccCc---EEECCEEEEEecccccCCCCEEEEEECCCCcE
Confidence 1 2355555443 358763220100 000000011 1236788886432 4689999999986
Q ss_pred -EEE
Q 015511 375 -WRW 377 (405)
Q Consensus 375 -w~~ 377 (405)
|+.
T Consensus 203 ~W~~ 206 (677)
T 1kb0_A 203 KWRW 206 (677)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 544
No 84
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=76.62 E-value=56 Score=31.52 Aligned_cols=195 Identities=9% Similarity=-0.017 Sum_probs=93.4
Q ss_pred CceEEEEeCCCCceEEEEeCcccceee-ccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeC
Q 015511 135 YGLVCFMDNDSRSELYVCNPISKSWKK-LEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDS 213 (405)
Q Consensus 135 ~Gll~~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s 213 (405)
++++++... ....+.|+|+.|++... ++.- ... .++.++++. .| +|+.+. .-.+.+||.
T Consensus 166 ~~~~~V~~~-~~~~V~viD~~t~~v~~~i~~g---~~p----~~v~~SpDG-r~-lyv~~~----------dg~V~viD~ 225 (567)
T 1qks_A 166 ENLFSVTLR-DAGQIALIDGSTYEIKTVLDTG---YAV----HISRLSASG-RY-LFVIGR----------DGKVNMIDL 225 (567)
T ss_dssp GGEEEEEET-TTTEEEEEETTTCCEEEEEECS---SCE----EEEEECTTS-CE-EEEEET----------TSEEEEEET
T ss_pred CceEEEEeC-CCCeEEEEECCCCeEEEEEeCC---CCc----cceEECCCC-CE-EEEEcC----------CCeEEEEEC
Confidence 456666554 34789999999987653 4421 111 144455543 33 444331 126888997
Q ss_pred CCCCcccccccccccccCCCccEEE-----Cc-EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCc-cc
Q 015511 214 DTMMWVTSWKEVLTGWRAGDESIIC-----DG-VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCA-LT 286 (405)
Q Consensus 214 ~~~~W~~~~~~~~~~~~~~~~~v~~-----~g-~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~-~~ 286 (405)
.+.+-.... .+..+.. .....+- +| .+|+..... ..+..+|..+.+--. .++.... ..
T Consensus 226 ~~~t~~~v~-~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~--------~~v~ViD~~t~~~~~-----~i~~~~~~~~ 290 (567)
T 1qks_A 226 WMKEPTTVA-EIKIGSE-ARSIETSKMEGWEDKYAIAGAYWP--------PQYVIMDGETLEPKK-----IQSTRGMTYD 290 (567)
T ss_dssp TSSSCCEEE-EEECCSE-EEEEEECCSTTCTTTEEEEEEEET--------TEEEEEETTTCCEEE-----EEECCEECTT
T ss_pred CCCCCcEeE-EEecCCC-CceeEEccccCCCCCEEEEEEccC--------CeEEEEECCCCcEEE-----EEeccccccc
Confidence 412212221 1111111 1111222 45 566665433 478899987755221 1222110 00
Q ss_pred ------c---CceEE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEE
Q 015511 287 ------C---GRLMN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIY 356 (405)
Q Consensus 287 ------~---~~l~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~ 356 (405)
. ..++. .++..+++.... ...+.+.+..+....++..++...+ ..-+++...|..+|
T Consensus 291 ~~~~~p~~rva~i~~s~~~~~~vv~~~~-------~g~v~~vd~~~~~~~~v~~i~~~~~------~~d~~~~pdgr~~~ 357 (567)
T 1qks_A 291 EQEYHPEPRVAAILASHYRPEFIVNVKE-------TGKILLVDYTDLNNLKTTEISAERF------LHDGGLDGSHRYFI 357 (567)
T ss_dssp TCCEESCCCEEEEEECSSSSEEEEEETT-------TTEEEEEETTCSSEEEEEEEECCSS------EEEEEECTTSCEEE
T ss_pred cccccCCCceEEEEEcCCCCEEEEEecC-------CCeEEEEecCCCccceeeeeecccc------ccCceECCCCCEEE
Confidence 0 11222 223444444211 1223333333333444444432111 01234556788888
Q ss_pred EEeCCCCeEEEEECCCCcEEE
Q 015511 357 IQSYGAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 357 ~~~~~~~~~~~Yd~~~~~w~~ 377 (405)
+.......+.++|+++++...
T Consensus 358 va~~~sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 358 TAANARNKLVVIDTKEGKLVA 378 (567)
T ss_dssp EEEGGGTEEEEEETTTTEEEE
T ss_pred EEeCCCCeEEEEECCCCcEEE
Confidence 877667789999999997643
No 85
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=76.51 E-value=35 Score=29.15 Aligned_cols=231 Identities=11% Similarity=0.021 Sum_probs=104.9
Q ss_pred eeEEecCCCCeeeeccCCC---CCCC-CeEEEecC-ceEEEEeCCCCceEEEEeCcccceeec-cCCCCCCCCccceeEE
Q 015511 105 IGYAYDPILRKWYGIELPC---IETS-NWFIASSY-GLVCFMDNDSRSELYVCNPISKSWKKL-EEPPGLKFSDYSALSL 178 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~p~---~~~~-~~~~~s~~-Gll~~~~~~~~~~~~v~NP~T~~~~~l-P~~~~~~~~~~~~~~~ 178 (405)
....||+..+++..+..+. .... ..+.-..+ |.+++... ...++++|+. ++...+ ....... .......+
T Consensus 47 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~--~~~l~~~d~~-g~~~~~~~~~~~~~-~~~~~~~i 122 (314)
T 1pjx_A 47 EILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM--RLGLLVVQTD-GTFEEIAKKDSEGR-RMQGCNDC 122 (314)
T ss_dssp EEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET--TTEEEEEETT-SCEEECCSBCTTSC-BCBCCCEE
T ss_pred EEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC--CCCEEEEeCC-CCEEEEEeccCCCc-cccCCcCE
Confidence 4556777666665443321 1011 12333445 77777654 2478999998 777665 3221111 11112355
Q ss_pred EEeCCCCcEEEEEEeeecc------CCCccccceEEEEEeCCCCCcccccccccccccCCCccEE------ECc-EEEee
Q 015511 179 SVDRVSHRYTVSIVKSKQV------TGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESII------CDG-VLYFL 245 (405)
Q Consensus 179 ~~~~~~~~ykv~~~~~~~~------~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~------~~g-~iy~l 245 (405)
..|+.. ++++...... ..........+..|+.. ++....... ... ...+. -+| .+|+.
T Consensus 123 ~~d~~g---~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~----~~~-~~~i~~~~~~d~dg~~l~v~ 193 (314)
T 1pjx_A 123 AFDYEG---NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA----FQF-PNGIAVRHMNDGRPYQLIVA 193 (314)
T ss_dssp EECTTS---CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE----ESS-EEEEEEEECTTSCEEEEEEE
T ss_pred EECCCC---CEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC----CCC-cceEEEecccCCCCCEEEEE
Confidence 566643 3444332100 00000001356777764 443322110 001 11222 235 45665
Q ss_pred EEecCCCCCCCccEEEEEECC-CCcchhhhcccccccCCcc-c-cCceE-EeCCcEEEEEccccccccCccceEEEEEEe
Q 015511 246 IYATGGGAPENRHGLISFNLS-SRSSHALLIKSFIPVPCAL-T-CGRLM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLN 321 (405)
Q Consensus 246 ~~~~~~~~~~~~~~i~~fD~~-~~~w~~~~~~~~~~~p~~~-~-~~~l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~ 321 (405)
... ...|..||+. +.+..... .....+... . ...++ ..+|.|++.... ...+.+|..+
T Consensus 194 ~~~--------~~~i~~~~~~~~g~~~~~~--~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~--------~~~i~~~d~~ 255 (314)
T 1pjx_A 194 ETP--------TKKLWSYDIKGPAKIENKK--VWGHIPGTHEGGADGMDFDEDNNLLVANWG--------SSHIEVFGPD 255 (314)
T ss_dssp ETT--------TTEEEEEEEEETTEEEEEE--EEEECCCCSSCEEEEEEEBTTCCEEEEEET--------TTEEEEECTT
T ss_pred ECC--------CCeEEEEECCCCCccccce--EEEECCCCCCCCCCceEECCCCCEEEEEcC--------CCEEEEEcCC
Confidence 421 2478899876 33321100 011222110 1 11233 346888887642 1347777665
Q ss_pred CceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCC
Q 015511 322 GKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLK 373 (405)
Q Consensus 322 ~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~ 373 (405)
+.+-......+.. ...-+++...++.+|+.......+..|+++..
T Consensus 256 ~g~~~~~~~~~~~-------~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 256 GGQPKMRIRCPFE-------KPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp CBSCSEEEECSSS-------CEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCcEeEEEeCCCC-------CceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 3332222222211 00112233467779988765678999999864
No 86
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=76.30 E-value=40 Score=29.59 Aligned_cols=93 Identities=8% Similarity=0.075 Sum_probs=47.9
Q ss_pred cEEEEEECCCCcchhhhcccccccCCccccC-ceE-EeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhH
Q 015511 258 HGLISFNLSSRSSHALLIKSFIPVPCALTCG-RLM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKF 335 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~-~l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~ 335 (405)
..+..+|+.+.+-. ..+....... .+. .-+|++++.++.+ ..+.+|++....-... +..
T Consensus 164 ~~i~~wd~~~~~~~-------~~~~~h~~~v~~~~~~~~~~~l~sg~~d--------~~v~~wd~~~~~~~~~--~~~-- 224 (340)
T 1got_B 164 TTCALWDIETGQQT-------TTFTGHTGDVMSLSLAPDTRLFVSGACD--------ASAKLWDVREGMCRQT--FTG-- 224 (340)
T ss_dssp SCEEEEETTTTEEE-------EEECCCSSCEEEEEECTTSSEEEEEETT--------SCEEEEETTTCSEEEE--ECC--
T ss_pred CcEEEEECCCCcEE-------EEEcCCCCceEEEEECCCCCEEEEEeCC--------CcEEEEECCCCeeEEE--EcC--
Confidence 36888999876521 1111111111 122 2256776666532 4599998876532221 110
Q ss_pred HhccCCCCcee--EEeeCCCEEEEEeCCCCeEEEEECCCCcE
Q 015511 336 FQGFGEFDDVF--ASSGTDDLIYIQSYGAPSLLVYDMNLKQW 375 (405)
Q Consensus 336 ~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w 375 (405)
....+. ++...++.+... ..+..+.+||+++++-
T Consensus 225 -----h~~~v~~v~~~p~~~~l~s~-s~d~~v~iwd~~~~~~ 260 (340)
T 1got_B 225 -----HESDINAICFFPNGNAFATG-SDDATCRLFDLRADQE 260 (340)
T ss_dssp -----CSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEE
T ss_pred -----CcCCEEEEEEcCCCCEEEEE-cCCCcEEEEECCCCcE
Confidence 011222 333455555544 3567899999988753
No 87
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=76.13 E-value=48 Score=30.44 Aligned_cols=124 Identities=7% Similarity=-0.065 Sum_probs=61.5
Q ss_pred cEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHh
Q 015511 258 HGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQ 337 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~ 337 (405)
..|..||+.+.+-.. .... .....-..+...+|++++.++.+ ..+.+|++...+-.....+......
T Consensus 220 ~~i~vwd~~~~~~~~----~~~~-~h~~~v~~~~~sd~~~l~s~~~d--------~~v~vwd~~~~~~~~~~~~~~~~~~ 286 (450)
T 2vdu_B 220 EHIKISHYPQCFIVD----KWLF-GHKHFVSSICCGKDYLLLSAGGD--------DKIFAWDWKTGKNLSTFDYNSLIKP 286 (450)
T ss_dssp SCEEEEEESCTTCEE----EECC-CCSSCEEEEEECSTTEEEEEESS--------SEEEEEETTTCCEEEEEECHHHHGG
T ss_pred CcEEEEECCCCceee----eeec-CCCCceEEEEECCCCEEEEEeCC--------CeEEEEECCCCcEeeeecchhhhhh
Confidence 368889987665210 0010 11001111222277777766532 4699999987654443332211100
Q ss_pred c----------c------CCCCcee--EEeeCCCEEEEEeCCCCeEEEEEC--CC-CcEEEccCCCCCCCCcccceeeee
Q 015511 338 G----------F------GEFDDVF--ASSGTDDLIYIQSYGAPSLLVYDM--NL-KQWRWSHKCPVTKRFPLQLFTGFC 396 (405)
Q Consensus 338 ~----------~------~~~~~~~--~~~~~~~~i~~~~~~~~~~~~Yd~--~~-~~w~~l~~~p~~~~~~~~~~~~~~ 396 (405)
. | .....+. .+...++.+++....+..+.+||+ .+ ++++.+....... ...+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~-----~v~~~~ 361 (450)
T 2vdu_B 287 YLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPY-----NVISLS 361 (450)
T ss_dssp GCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSS-----CEEEEE
T ss_pred hhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCC-----ceEEEE
Confidence 0 0 0001122 234457788887656789999999 33 4555554443321 134566
Q ss_pred ece
Q 015511 397 FEP 399 (405)
Q Consensus 397 ~~p 399 (405)
|.|
T Consensus 362 ~~~ 364 (450)
T 2vdu_B 362 AHN 364 (450)
T ss_dssp EET
T ss_pred ecC
Confidence 655
No 88
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=75.30 E-value=47 Score=29.99 Aligned_cols=199 Identities=12% Similarity=0.054 Sum_probs=93.1
Q ss_pred CceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCC
Q 015511 135 YGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSD 214 (405)
Q Consensus 135 ~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~ 214 (405)
+..+++.+. ....+.+||+.+++....-... .....+.+++.. .+ +++.+... .... ...-.+.+|+..
T Consensus 223 ~~~l~~~~~-~~~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~g-~~-l~~~~~~~-~~~~-~~dg~i~~~d~~ 291 (433)
T 3bws_A 223 RDLVYCSNW-ISEDISVIDRKTKLEIRKTDKI------GLPRGLLLSKDG-KE-LYIAQFSA-SNQE-SGGGRLGIYSMD 291 (433)
T ss_dssp TTEEEEEET-TTTEEEEEETTTTEEEEECCCC------SEEEEEEECTTS-SE-EEEEEEES-CTTC-SCCEEEEEEETT
T ss_pred CCEEEEEec-CCCcEEEEECCCCcEEEEecCC------CCceEEEEcCCC-CE-EEEEECCC-Cccc-cCCCeEEEEECC
Confidence 445545442 2478999999988765432211 112345555543 23 33322111 0000 002378899987
Q ss_pred CCCcccccccccccccCCCccEEE--Cc-EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceE
Q 015511 215 TMMWVTSWKEVLTGWRAGDESIIC--DG-VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM 291 (405)
Q Consensus 215 ~~~W~~~~~~~~~~~~~~~~~v~~--~g-~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~ 291 (405)
++.-..... .......+.+ +| .+|+.+.. ...+..||+.+.+-.. .++.. .....+.
T Consensus 292 ~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~--------~~~v~v~d~~~~~~~~-----~~~~~--~~~~~~~ 351 (433)
T 3bws_A 292 KEKLIDTIG-----PPGNKRHIVSGNTENKIYVSDMC--------CSKIEVYDLKEKKVQK-----SIPVF--DKPNTIA 351 (433)
T ss_dssp TTEEEEEEE-----EEECEEEEEECSSTTEEEEEETT--------TTEEEEEETTTTEEEE-----EEECS--SSEEEEE
T ss_pred CCcEEeecc-----CCCCcceEEECCCCCEEEEEecC--------CCEEEEEECCCCcEEE-----EecCC--CCCCeEE
Confidence 664322110 0001112222 45 56665432 2479999998765321 12211 1111233
Q ss_pred E-eCCcEEEEEccccccc-------cCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCC
Q 015511 292 N-LKEKLVMVGGIGKQDR-------PDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAP 363 (405)
Q Consensus 292 ~-~~G~L~~v~~~~~~~~-------~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 363 (405)
. -+|+.++++....... ......+.+|+++..+-........ ....+++...|+.+++....+.
T Consensus 352 ~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~--------~~~~~~~s~dg~~l~~~~~~d~ 423 (433)
T 3bws_A 352 LSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN--------QPTGLDVSPDNRYLVISDFLDH 423 (433)
T ss_dssp ECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS--------SEEEEEECTTSCEEEEEETTTT
T ss_pred EcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC--------CCceEEEcCCCCEEEEEECCCC
Confidence 2 3465444443211000 0001268888877654433222111 0112344556778887765578
Q ss_pred eEEEEECCC
Q 015511 364 SLLVYDMNL 372 (405)
Q Consensus 364 ~~~~Yd~~~ 372 (405)
.+.+||++.
T Consensus 424 ~i~v~~~~~ 432 (433)
T 3bws_A 424 QIRVYRRDG 432 (433)
T ss_dssp EEEEEEETT
T ss_pred eEEEEEecC
Confidence 999999863
No 89
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=74.47 E-value=38 Score=28.54 Aligned_cols=218 Identities=14% Similarity=0.057 Sum_probs=108.0
Q ss_pred eeEEecCCCCeeeeccCCCCCCCC-eEEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCC
Q 015511 105 IGYAYDPILRKWYGIELPCIETSN-WFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRV 183 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~p~~~~~~-~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~ 183 (405)
....+|+. +....+.++...... .+....+|.+++.... ...++++|+. ++...+..+.. ......+..++.
T Consensus 37 ~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~~~~-g~~~~~~~~~~----~~~~~~i~~~~~ 109 (299)
T 2z2n_A 37 MISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENA-ANKIGRITKK-GIIKEYTLPNP----DSAPYGITEGPN 109 (299)
T ss_dssp EEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETT-TTEEEEECTT-SCEEEEECSST----TCCEEEEEECTT
T ss_pred cEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCC-CCeEEEECCC-CcEEEEeCCCc----CCCceeeEECCC
Confidence 45667777 665555444222222 2344456777776532 3678999986 55544432111 112245556653
Q ss_pred CCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEE
Q 015511 184 SHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLI 261 (405)
Q Consensus 184 ~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~ 261 (405)
. ++++.... ...+.+|+. ++.......+ .. ......+.+ +|.+|+.... ...+.
T Consensus 110 g---~l~v~~~~---------~~~i~~~d~-~g~~~~~~~~--~~-~~~~~~i~~~~~g~l~v~~~~--------~~~i~ 165 (299)
T 2z2n_A 110 G---DIWFTEMN---------GNRIGRITD-DGKIREYELP--NK-GSYPSFITLGSDNALWFTENQ--------NNAIG 165 (299)
T ss_dssp S---CEEEEETT---------TTEEEEECT-TCCEEEEECS--ST-TCCEEEEEECTTSCEEEEETT--------TTEEE
T ss_pred C---CEEEEecC---------CceEEEECC-CCCEEEecCC--CC-CCCCceEEEcCCCCEEEEeCC--------CCEEE
Confidence 3 34544321 126677776 5544332111 00 011123333 5788776521 24799
Q ss_pred EEECCCCcchhhhcccccccCCcccc-CceEE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhcc
Q 015511 262 SFNLSSRSSHALLIKSFIPVPCALTC-GRLMN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGF 339 (405)
Q Consensus 262 ~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~ 339 (405)
.||+ +.+... ...+..... ..+.. .+|+|++.... ...+.+|.. +++...+ .++..
T Consensus 166 ~~~~-~g~~~~------~~~~~~~~~~~~i~~~~~g~l~v~~~~--------~~~i~~~~~-~g~~~~~-~~~~~----- 223 (299)
T 2z2n_A 166 RITE-SGDITE------FKIPTPASGPVGITKGNDDALWFVEII--------GNKIGRITT-SGEITEF-KIPTP----- 223 (299)
T ss_dssp EECT-TCCEEE------EECSSTTCCEEEEEECTTSSEEEEETT--------TTEEEEECT-TCCEEEE-ECSST-----
T ss_pred EEcC-CCcEEE------eeCCCCCCcceeEEECCCCCEEEEccC--------CceEEEECC-CCcEEEE-ECCCC-----
Confidence 9999 665432 222221111 12333 35888887642 234666666 4554442 22211
Q ss_pred CCCCceeEEe-eCCCEEEEEeCCCCeEEEEECCCCcEEEc
Q 015511 340 GEFDDVFASS-GTDDLIYIQSYGAPSLLVYDMNLKQWRWS 378 (405)
Q Consensus 340 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l 378 (405)
...+.++. ..++.+|+.......+..||+ +++.+.+
T Consensus 224 --~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~ 260 (299)
T 2z2n_A 224 --NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEY 260 (299)
T ss_dssp --TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEE
T ss_pred --CCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEE
Confidence 01233332 223458887655678999999 4666554
No 90
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=73.84 E-value=46 Score=29.14 Aligned_cols=69 Identities=4% Similarity=-0.089 Sum_probs=39.1
Q ss_pred CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCcee--EEeeCCCEEEEEeCCCCeEEEEECC
Q 015511 294 KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVF--ASSGTDDLIYIQSYGAPSLLVYDMN 371 (405)
Q Consensus 294 ~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~Yd~~ 371 (405)
+|++++++.. ...+.+|++...+-........ ..+. ++...+..+ +.. .+..+.+||++
T Consensus 213 ~~~~l~~~~~--------d~~i~i~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l-~~~-~d~~i~i~~~~ 273 (372)
T 1k8k_C 213 NGSRVAWVSH--------DSTVCLADADKKMAVATLASET---------LPLLAVTFITESSLV-AAG-HDCFPVLFTYD 273 (372)
T ss_dssp SSSEEEEEET--------TTEEEEEEGGGTTEEEEEECSS---------CCEEEEEEEETTEEE-EEE-TTSSCEEEEEE
T ss_pred CCCEEEEEeC--------CCEEEEEECCCCceeEEEccCC---------CCeEEEEEecCCCEE-EEE-eCCeEEEEEcc
Confidence 5666555542 2459999998654222211111 1122 233445444 333 56789999999
Q ss_pred C--CcEEEccCC
Q 015511 372 L--KQWRWSHKC 381 (405)
Q Consensus 372 ~--~~w~~l~~~ 381 (405)
+ ++|..+...
T Consensus 274 ~~~~~~~~~~~~ 285 (372)
T 1k8k_C 274 SAAGKLSFGGRL 285 (372)
T ss_dssp TTTTEEEECCCC
T ss_pred CcCceEEEeecc
Confidence 9 999887543
No 91
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=73.76 E-value=40 Score=28.44 Aligned_cols=218 Identities=14% Similarity=0.081 Sum_probs=108.2
Q ss_pred eeEEecCCCCeeeeccCCCCCCC-CeEEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCC
Q 015511 105 IGYAYDPILRKWYGIELPCIETS-NWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRV 183 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~p~~~~~-~~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~ 183 (405)
....||+. ++...+.++..... ..+....+|.+++... ....++++|+. ++...+..+... .....+..++.
T Consensus 42 ~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~v~~~d~~-g~~~~~~~~~~~----~~~~~i~~~~~ 114 (300)
T 2qc5_A 42 KISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTEN-GANKIGKLSKK-GGFTEYPLPQPD----SGPYGITEGLN 114 (300)
T ss_dssp EEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEET-TTTEEEEECTT-SCEEEEECSSTT----CCEEEEEECST
T ss_pred eEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEec-CCCeEEEECCC-CCeEEecCCCCC----CCCccceECCC
Confidence 45667777 66555554422111 1233445677777653 23678999998 776655432111 12245555553
Q ss_pred CCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEE
Q 015511 184 SHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLI 261 (405)
Q Consensus 184 ~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~ 261 (405)
. ++++.... ...+..|+.. +....... +.. ......+.+ +|.+|+.... ...|.
T Consensus 115 g---~l~v~~~~---------~~~i~~~~~~-g~~~~~~~--~~~-~~~~~~i~~d~~g~l~v~~~~--------~~~i~ 170 (300)
T 2qc5_A 115 G---DIWFTQLN---------GDRIGKLTAD-GTIYEYDL--PNK-GSYPAFITLGSDNALWFTENQ--------NNSIG 170 (300)
T ss_dssp T---CEEEEETT---------TTEEEEECTT-SCEEEEEC--SST-TCCEEEEEECTTSSEEEEETT--------TTEEE
T ss_pred C---CEEEEccC---------CCeEEEECCC-CCEEEccC--CCC-CCCceeEEECCCCCEEEEecC--------CCeEE
Confidence 3 34443321 1256777765 54432211 100 011123333 5777776521 24799
Q ss_pred EEECCCCcchhhhcccccccCCcccc-CceEE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhcc
Q 015511 262 SFNLSSRSSHALLIKSFIPVPCALTC-GRLMN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGF 339 (405)
Q Consensus 262 ~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~ 339 (405)
.||+ +.++.. ...|..... ..+.. .+|.|++.... ...+.+|.. +++...+. ++...
T Consensus 171 ~~~~-~g~~~~------~~~~~~~~~~~~i~~d~~g~l~v~~~~--------~~~i~~~~~-~g~~~~~~-~~~~~---- 229 (300)
T 2qc5_A 171 RITN-TGKLEE------YPLPTNAAAPVGITSGNDGALWFVEIM--------GNKIGRITT-TGEISEYD-IPTPN---- 229 (300)
T ss_dssp EECT-TCCEEE------EECSSTTCCEEEEEECTTSSEEEEETT--------TTEEEEECT-TCCEEEEE-CSSTT----
T ss_pred EECC-CCcEEE------eeCCCCCCCcceEEECCCCCEEEEccC--------CCEEEEEcC-CCcEEEEE-CCCCC----
Confidence 9998 555431 222322211 12333 36889887642 123555554 44444432 22110
Q ss_pred CCCCceeEEe-eCCCEEEEEeCCCCeEEEEECCCCcEEEc
Q 015511 340 GEFDDVFASS-GTDDLIYIQSYGAPSLLVYDMNLKQWRWS 378 (405)
Q Consensus 340 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l 378 (405)
..+.++. ..++.+|+.......+..||+ +++...+
T Consensus 230 ---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 265 (300)
T 2qc5_A 230 ---ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEY 265 (300)
T ss_dssp ---CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEE
T ss_pred ---CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEE
Confidence 1233332 223458887655678999999 5666654
No 92
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=73.42 E-value=55 Score=29.90 Aligned_cols=209 Identities=11% Similarity=0.038 Sum_probs=103.4
Q ss_pred EEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEE
Q 015511 130 FIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIH 209 (405)
Q Consensus 130 ~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~ 209 (405)
+....+|-|++.+.. ...+.++|+.+++...+.... . .. . +..++..+ .+++..... ...+.
T Consensus 136 la~d~~g~lyv~d~~-~~~I~~id~~~g~~~~~~~~~--~---~~-~-ia~~~~g~--~l~~~d~~~--------~~~I~ 197 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRD-DPRVRLISVDDNKVTTVHPGF--K---GG-K-PAVTKDKQ--RVYSIGWEG--------THTVY 197 (409)
T ss_dssp EEECSTTEEEEEETT-TTEEEEEETTTTEEEEEEETC--C---BC-B-CEECTTSS--EEEEEBSST--------TCEEE
T ss_pred EEEeCCCCEEEEecC-CCcEEEEECCCCEEEEeeccC--C---CC-c-eeEecCCC--cEEEEecCC--------CceEE
Confidence 444467888887653 478999999998877664321 1 11 1 34444432 344443210 12677
Q ss_pred EEeCCCCCcc--cccccccc-cccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhccccc-ccCC
Q 015511 210 IYDSDTMMWV--TSWKEVLT-GWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFI-PVPC 283 (405)
Q Consensus 210 vy~s~~~~W~--~~~~~~~~-~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~-~~p~ 283 (405)
+++..++ |. ... .... .....+..++. +|.||+.. . ...|..||+.+.....+ ... ....
T Consensus 198 ~~d~~~~-~~~~~~g-~~~~~~~~~p~~iav~p~~g~lyv~d-~--------~~~I~~~d~~~~~~~~~---~~~~~~g~ 263 (409)
T 3hrp_A 198 VYMKASG-WAPTRIG-QLGSTFSGKIGAVALDETEEWLYFVD-S--------NKNFGRFNVKTQEVTLI---KQLELSGS 263 (409)
T ss_dssp EEEGGGT-TCEEEEE-ECCTTSCSCCCBCEECTTSSEEEEEC-T--------TCEEEEEETTTCCEEEE---EECCCCSC
T ss_pred EEEcCCC-ceeEEee-eccchhcCCcEEEEEeCCCCeEEEEE-C--------CCcEEEEECCCCCEEEE---ecccccCC
Confidence 7776432 22 110 0001 11111222222 68999932 1 24799999987653211 000 1111
Q ss_pred cccc-C-ceEEe--CCcEEEEEccccccccCccceEEEEEEeCceeEEE-ecc-ChhHHh------ccCCCCceeEEeeC
Q 015511 284 ALTC-G-RLMNL--KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEV-ARM-PHKFFQ------GFGEFDDVFASSGT 351 (405)
Q Consensus 284 ~~~~-~-~l~~~--~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v-~~i-~~~~~~------~~~~~~~~~~~~~~ 351 (405)
.... . .++.. +|.||+.... ...+.+|.++.. -..+ ..- ...... .|. ...-+++...
T Consensus 264 ~~~~P~~~ia~~p~~g~lyv~d~~--------~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~-~P~gia~d~d 333 (409)
T 3hrp_A 264 LGTNPGPYLIYYFVDSNFYMSDQN--------LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFA-QPNGMTVDED 333 (409)
T ss_dssp CCCSSCCEEEEETTTTEEEEEETT--------TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCS-SEEEEEECTT
T ss_pred CCCCccccEEEeCCCCEEEEEeCC--------CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeC-CCeEEEEeCC
Confidence 1112 1 45544 5889988652 233555544433 2222 111 000000 010 1122333344
Q ss_pred CCEEEEEeC-CCCeEEEEECCCCcEEEccCC
Q 015511 352 DDLIYIQSY-GAPSLLVYDMNLKQWRWSHKC 381 (405)
Q Consensus 352 ~~~i~~~~~-~~~~~~~Yd~~~~~w~~l~~~ 381 (405)
|+ +|+... ....+..+|+.+++...+...
T Consensus 334 G~-lyvad~~~~~~I~~~~~~~G~v~~~~g~ 363 (409)
T 3hrp_A 334 GN-FYIVDGFKGYCLRKLDILDGYVSTVAGQ 363 (409)
T ss_dssp CC-EEEEETTTTCEEEEEETTTTEEEEEEEC
T ss_pred CC-EEEEeCCCCCEEEEEECCCCEEEEEeCC
Confidence 55 888877 778999999888888776543
No 93
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=73.38 E-value=30 Score=31.65 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=47.0
Q ss_pred CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCC-EEEEEeCCCCeEEEEECCC
Q 015511 294 KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDD-LIYIQSYGAPSLLVYDMNL 372 (405)
Q Consensus 294 ~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~Yd~~~ 372 (405)
+++||+...... ...+....=+||.+|...++.+.+++-.- ...-+++..++. .+|..+.....+.+||..+
T Consensus 291 ~~~lyV~~~~~~-~~~hk~~~~~V~viD~~t~kv~~~i~vg~------~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 291 LDRIYLLVDQRD-EWRHKTASRFVVVLDAKTGERLAKFEMGH------EIDSINVSQDEKPLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp TTEEEEEEEECC-TTCTTSCEEEEEEEETTTCCEEEEEEEEE------EECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred CCeEEEEecccc-ccccCCCCCEEEEEECCCCeEEEEEECCC------CcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 468888754211 01111223578888877777776665321 001244555665 7888776678999999999
Q ss_pred CcEEE
Q 015511 373 KQWRW 377 (405)
Q Consensus 373 ~~w~~ 377 (405)
++...
T Consensus 364 ~k~~~ 368 (386)
T 3sjl_D 364 GEELR 368 (386)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 97654
No 94
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=73.33 E-value=44 Score=28.76 Aligned_cols=200 Identities=13% Similarity=0.080 Sum_probs=93.0
Q ss_pred EEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCC
Q 015511 138 VCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMM 217 (405)
Q Consensus 138 l~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~ 217 (405)
|+..+. ....++.+++ +++...+.... ....++..|+.. ++++.... ...+..|+.. ++
T Consensus 59 l~~~d~-~~~~i~~~~~-~g~~~~~~~~~------~~~~gl~~d~dG---~l~v~~~~---------~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 59 LVWSDL-VGRRVLGWRE-DGTVDVLLDAT------AFTNGNAVDAQQ---RLVHCEHG---------RRAITRSDAD-GQ 117 (305)
T ss_dssp EEEEET-TTTEEEEEET-TSCEEEEEESC------SCEEEEEECTTS---CEEEEETT---------TTEEEEECTT-SC
T ss_pred EEEEEC-CCCEEEEEeC-CCCEEEEeCCC------CccceeeECCCC---CEEEEECC---------CCEEEEECCC-CC
Confidence 444443 2467888888 66554443221 112456666644 34443211 1267777764 55
Q ss_pred cccccccccccccCCCccEEE--CcEEEeeEEecC-------C--CCCCCccEEEEEECCCCcchhhhcccccccCCccc
Q 015511 218 WVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATG-------G--GAPENRHGLISFNLSSRSSHALLIKSFIPVPCALT 286 (405)
Q Consensus 218 W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~-------~--~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~ 286 (405)
.+................+.+ +|.+|+-....+ . ........|..||+.+.+...+. ....|
T Consensus 118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p---- 190 (305)
T 3dr2_A 118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHP---- 190 (305)
T ss_dssp EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSE----
T ss_pred EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCC----
Confidence 443321100000111122333 788887421000 0 00112357999999887765321 01111
Q ss_pred cCceE-EeCCc-EEEEEccccccccCccceEEEEEEeCceeEEE---eccChhHHhccCCCCceeEEeeCCCEEEEEeCC
Q 015511 287 CGRLM-NLKEK-LVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEV---ARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG 361 (405)
Q Consensus 287 ~~~l~-~~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v---~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 361 (405)
..++ .-+|+ ||++...... .....+.+|.++.+..... ...+. ....-+.+...|+ ||+..
T Consensus 191 -~gl~~spdg~~lyv~~~~~~~---~~~~~i~~~~~~~~~l~~~~~~~~~~~-------~~pdgi~~d~~G~-lwv~~-- 256 (305)
T 3dr2_A 191 -NGLAFSPDEQTLYVSQTPEQG---HGSVEITAFAWRDGALHDRRHFASVPD-------GLPDGFCVDRGGW-LWSSS-- 256 (305)
T ss_dssp -EEEEECTTSSEEEEEECCC------CCCEEEEEEEETTEEEEEEEEECCSS-------SCCCSEEECTTSC-EEECC--
T ss_pred -cceEEcCCCCEEEEEecCCcC---CCCCEEEEEEecCCCccCCeEEEECCC-------CCCCeEEECCCCC-EEEec--
Confidence 1233 33565 7766542100 0014577888776542211 11110 0112234444455 77764
Q ss_pred CCeEEEEECCCCcEEEcc
Q 015511 362 APSLLVYDMNLKQWRWSH 379 (405)
Q Consensus 362 ~~~~~~Yd~~~~~w~~l~ 379 (405)
...+.+||++.+....+.
T Consensus 257 ~~gv~~~~~~g~~~~~~~ 274 (305)
T 3dr2_A 257 GTGVCVFDSDGQLLGHIP 274 (305)
T ss_dssp SSEEEEECTTSCEEEEEE
T ss_pred CCcEEEECCCCCEEEEEE
Confidence 347999999877666654
No 95
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=73.32 E-value=42 Score=28.55 Aligned_cols=227 Identities=10% Similarity=0.061 Sum_probs=106.1
Q ss_pred eeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCC
Q 015511 105 IGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVS 184 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~ 184 (405)
....+|+..+ ...+..+.. ....+.-+.+|.+++... ....++++|+.+++...+....... .......+..++..
T Consensus 51 ~i~~~~~~~~-~~~~~~~~~-~~~~l~~~~dg~l~v~~~-~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~~~~i~~d~~G 126 (296)
T 3e5z_A 51 RTWAWSDDGQ-LSPEMHPSH-HQNGHCLNKQGHLIACSH-GLRRLERQREPGGEWESIADSFEGK-KLNSPNDVCLAPDG 126 (296)
T ss_dssp EEEEEETTSC-EEEEESSCS-SEEEEEECTTCCEEEEET-TTTEEEEECSTTCCEEEEECEETTE-ECCCCCCEEECTTS
T ss_pred EEEEEECCCC-eEEEECCCC-CcceeeECCCCcEEEEec-CCCeEEEEcCCCCcEEEEeeccCCC-CCCCCCCEEECCCC
Confidence 3455666554 333332211 011233345677666543 2368999999999887764321110 00011234556544
Q ss_pred CcEEEEEE----eeecc----CCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCC
Q 015511 185 HRYTVSIV----KSKQV----TGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAP 254 (405)
Q Consensus 185 ~~ykv~~~----~~~~~----~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~ 254 (405)
++++. +.... ..........+..|+.. +.-...... .....++.+ +|.++ +....
T Consensus 127 ---~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-----~~~~~gi~~s~dg~~l-v~~~~----- 191 (296)
T 3e5z_A 127 ---SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD-----RVKPNGLAFLPSGNLL-VSDTG----- 191 (296)
T ss_dssp ---CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC-----CSSEEEEEECTTSCEE-EEETT-----
T ss_pred ---CEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC-----CCCCccEEECCCCCEE-EEeCC-----
Confidence 34443 11000 00000001256667665 443222111 111123444 57766 43221
Q ss_pred CCccEEEEEECC-CCcc-hhhhcccccccCCccccCceE-EeCCcEEEEEccccccccCccceEEEEEEeCceeEEEecc
Q 015511 255 ENRHGLISFNLS-SRSS-HALLIKSFIPVPCALTCGRLM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARM 331 (405)
Q Consensus 255 ~~~~~i~~fD~~-~~~w-~~~~~~~~~~~p~~~~~~~l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i 331 (405)
...|..||+. +.+. ... +....... ....+. ..+|+|++... ..+.+|..+... ......
T Consensus 192 --~~~i~~~~~~~~g~~~~~~---~~~~~~~~-~p~~i~~d~~G~l~v~~~----------~~v~~~~~~g~~-~~~~~~ 254 (296)
T 3e5z_A 192 --DNATHRYCLNARGETEYQG---VHFTVEPG-KTDGLRVDAGGLIWASAG----------DGVHVLTPDGDE-LGRVLT 254 (296)
T ss_dssp --TTEEEEEEECSSSCEEEEE---EEECCSSS-CCCSEEEBTTSCEEEEET----------TEEEEECTTSCE-EEEEEC
T ss_pred --CCeEEEEEECCCCcCcCCC---eEeeCCCC-CCCeEEECCCCCEEEEcC----------CeEEEECCCCCE-EEEEEC
Confidence 2479999986 4443 110 11111111 111333 45789888772 237777765332 222233
Q ss_pred ChhHHhccCCCCceeEE-eeCCCEEEEEeCCCCeEEEEECCCCcEEE
Q 015511 332 PHKFFQGFGEFDDVFAS-SGTDDLIYIQSYGAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 332 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~ 377 (405)
+.. . .-+++ ...++.+|+... ..++.|++++++.++
T Consensus 255 ~~~-~-------~~~~f~~~d~~~L~v~t~--~~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 255 PQT-T-------SNLCFGGPEGRTLYMTVS--TEFWSIETNVRGLEH 291 (296)
T ss_dssp SSC-C-------CEEEEESTTSCEEEEEET--TEEEEEECSCCBCCC
T ss_pred CCC-c-------eeEEEECCCCCEEEEEcC--CeEEEEEcccccccc
Confidence 321 1 11233 235678999763 489999999987654
No 96
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=72.93 E-value=43 Score=28.47 Aligned_cols=74 Identities=8% Similarity=0.075 Sum_probs=38.0
Q ss_pred ceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEe-CCCCeEEEEECCCCcEEEccCCCCCCCCcccc
Q 015511 313 KGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQS-YGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQL 391 (405)
Q Consensus 313 ~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~Yd~~~~~w~~l~~~p~~~~~~~~~ 391 (405)
..+.+|+.....-.......... ....+...++.+++.. ..+..+.+||+++++- +..... |. ..
T Consensus 221 ~~i~lwd~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~--~~~l~g-H~---~~ 286 (318)
T 4ggc_A 221 RHIRIWNVCSGACLSAVDAHSQV--------CSILWSPHYKELISGHGFAQNQLVIWKYPTMAK--VAELKG-HT---SR 286 (318)
T ss_dssp CEEEEEETTTCCEEEEEECSSCE--------EEEEEETTTTEEEEEECTTTCCEEEEETTTCCE--EEEECC-CS---SC
T ss_pred CEEEEEecccccccccccceeee--------eeeeecccccceEEEEEcCCCEEEEEECCCCcE--EEEEcC-CC---CC
Confidence 56889987764332222111110 1123344566666543 3567899999988754 222222 22 22
Q ss_pred eeeeeecee
Q 015511 392 FTGFCFEPR 400 (405)
Q Consensus 392 ~~~~~~~p~ 400 (405)
..+++|.|.
T Consensus 287 V~~l~~spd 295 (318)
T 4ggc_A 287 VLSLTMSPD 295 (318)
T ss_dssp EEEEEECTT
T ss_pred EEEEEEcCC
Confidence 556677663
No 97
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=72.66 E-value=55 Score=29.59 Aligned_cols=187 Identities=10% Similarity=0.018 Sum_probs=92.6
Q ss_pred CceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCC
Q 015511 135 YGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSD 214 (405)
Q Consensus 135 ~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~ 214 (405)
.++|++... ..+..+++.+++...+.... ....++.+|+..+ .||+.... ...+..++..
T Consensus 87 ~~~l~~~~~---~~I~~i~~~~~~~~~~~~~~------~~~~gl~~d~~~~--~ly~~D~~---------~~~I~r~~~~ 146 (386)
T 3v65_B 87 EPVLLFANR---IDIRQVLPHRSEYTLLLNNL------ENAIALDFHHRRE--LVFWSDVT---------LDRILRANLN 146 (386)
T ss_dssp CCEEEEECB---SCEEEECTTSCCCEEEECSC------SCEEEEEEETTTT--EEEEEETT---------TTEEEEEETT
T ss_pred cceeEeecC---ccceeeccCCCcEEEEecCC------CccEEEEEecCCC--eEEEEeCC---------CCcEEEEecC
Confidence 455555433 56777888777665543211 1235677775432 45665321 2367777776
Q ss_pred CCCcccccccccccccCCCccEEE---CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc-Cce
Q 015511 215 TMMWVTSWKEVLTGWRAGDESIIC---DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC-GRL 290 (405)
Q Consensus 215 ~~~W~~~~~~~~~~~~~~~~~v~~---~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l 290 (405)
......... ..... ..++.+ +|.|||.... ...|..+|+....-.. .+ ...... ..+
T Consensus 147 g~~~~~~~~---~~~~~-p~glavd~~~g~lY~~d~~--------~~~I~~~~~dg~~~~~-----l~--~~~l~~P~gi 207 (386)
T 3v65_B 147 GSNVEEVVS---TGLES-PGGLAVDWVHDKLYWTDSG--------TSRIEVANLDGAHRKV-----LL--WQSLEKPRAI 207 (386)
T ss_dssp SCCEEEEEC---SSCSC-CCCEEEETTTTEEEEEETT--------TTEEEECBTTSCSCEE-----EE--CSSCSCEEEE
T ss_pred CCCcEEEEe---CCCCC-ccEEEEEeCCCeEEEEcCC--------CCeEEEEeCCCCceEE-----ee--cCCCCCCcEE
Confidence 554332211 11111 123333 6899998632 2478889887544211 11 111111 234
Q ss_pred EEe--CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEE
Q 015511 291 MNL--KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVY 368 (405)
Q Consensus 291 ~~~--~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Y 368 (405)
++. +|.||+..... ...+....++...=+.+..-. +. .+.-+++...++.||+.......+.++
T Consensus 208 avdp~~g~ly~td~~~-------~~~I~r~~~dG~~~~~~~~~~------~~-~PnGlavd~~~~~lY~aD~~~~~I~~~ 273 (386)
T 3v65_B 208 ALHPMEGTIYWTDWGN-------TPRIEASSMDGSGRRIIADTH------LF-WPNGLTIDYAGRRMYWVDAKHHVIERA 273 (386)
T ss_dssp EEETTTTEEEEEECSS-------SCEEEEEETTSCSCEEEECSS------CS-CEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEEcCCCeEEEeccCC-------CCEEEEEeCCCCCcEEEEECC------CC-CeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence 443 67888876421 133555555432212211100 00 012233444577888876666678888
Q ss_pred ECCCCc
Q 015511 369 DMNLKQ 374 (405)
Q Consensus 369 d~~~~~ 374 (405)
|++...
T Consensus 274 d~dG~~ 279 (386)
T 3v65_B 274 NLDGSH 279 (386)
T ss_dssp CTTSCS
T ss_pred eCCCCe
Confidence 877543
No 98
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=72.36 E-value=43 Score=28.14 Aligned_cols=192 Identities=13% Similarity=0.095 Sum_probs=98.1
Q ss_pred cCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeC
Q 015511 134 SYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDS 213 (405)
Q Consensus 134 ~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s 213 (405)
.+|.|+..+.. ...++++++.++....+-... .....++.+|+..+ .+|+.... ...+.+++.
T Consensus 46 ~~~~ly~~d~~-~~~I~~~~~~g~~~~~~~~~~-----~~~p~~ia~d~~~~--~lyv~d~~---------~~~I~~~~~ 108 (267)
T 1npe_A 46 VDKVVYWTDIS-EPSIGRASLHGGEPTTIIRQD-----LGSPEGIALDHLGR--TIFWTDSQ---------LDRIEVAKM 108 (267)
T ss_dssp TTTEEEEEETT-TTEEEEEESSSCCCEEEECTT-----CCCEEEEEEETTTT--EEEEEETT---------TTEEEEEET
T ss_pred CCCEEEEEECC-CCEEEEEecCCCCcEEEEECC-----CCCccEEEEEecCC--eEEEEECC---------CCEEEEEEc
Confidence 46778877643 468889998876544332111 01224566665422 45554321 236778876
Q ss_pred CCCCcccccccccccccCCCccEEE---CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCce
Q 015511 214 DTMMWVTSWKEVLTGWRAGDESIIC---DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRL 290 (405)
Q Consensus 214 ~~~~W~~~~~~~~~~~~~~~~~v~~---~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l 290 (405)
....-+.... .... ....+.+ +|.+||..... ....|..+++....-.. ...... .....+
T Consensus 109 ~g~~~~~~~~---~~~~-~P~~i~vd~~~g~lyv~~~~~------~~~~I~~~~~dg~~~~~-----~~~~~~-~~P~gi 172 (267)
T 1npe_A 109 DGTQRRVLFD---TGLV-NPRGIVTDPVRGNLYWTDWNR------DNPKIETSHMDGTNRRI-----LAQDNL-GLPNGL 172 (267)
T ss_dssp TSCSCEEEEC---SSCS-SEEEEEEETTTTEEEEEECCS------SSCEEEEEETTSCCCEE-----EECTTC-SCEEEE
T ss_pred CCCCEEEEEE---CCCC-CccEEEEeeCCCEEEEEECCC------CCcEEEEEecCCCCcEE-----EEECCC-CCCcEE
Confidence 5332111100 0111 1123333 68999986321 12478888886543211 111111 011124
Q ss_pred EEe--CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEE
Q 015511 291 MNL--KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVY 368 (405)
Q Consensus 291 ~~~--~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Y 368 (405)
+.. +++||+.... ...+.++.++...-..+. + .+ ..+.++...++.+|+.......+.+|
T Consensus 173 a~d~~~~~lyv~d~~--------~~~I~~~~~~g~~~~~~~--~-----~~---~~P~gi~~d~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 173 TFDAFSSQLCWVDAG--------THRAECLNPAQPGRRKVL--E-----GL---QYPFAVTSYGKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp EEETTTTEEEEEETT--------TTEEEEEETTEEEEEEEE--E-----CC---CSEEEEEEETTEEEEEETTTTEEEEE
T ss_pred EEcCCCCEEEEEECC--------CCEEEEEecCCCceEEEe--c-----CC---CCceEEEEeCCEEEEEECCCCeEEEE
Confidence 433 4688888753 234666666532211111 1 01 12344444578999987767899999
Q ss_pred ECCCCcEE
Q 015511 369 DMNLKQWR 376 (405)
Q Consensus 369 d~~~~~w~ 376 (405)
|+++++..
T Consensus 235 d~~~g~~~ 242 (267)
T 1npe_A 235 DLAISKEM 242 (267)
T ss_dssp ETTTTEEE
T ss_pred eCCCCCce
Confidence 99987653
No 99
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=72.01 E-value=53 Score=29.10 Aligned_cols=190 Identities=11% Similarity=-0.040 Sum_probs=85.0
Q ss_pred ecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015511 133 SSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD 212 (405)
Q Consensus 133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~ 212 (405)
+.+|-.++.+. ....+.+||..+++....-.. +.. ....+.+.+..+.+ ++..+. .-.+.+||
T Consensus 148 spdg~~l~sgs-~dg~v~iwd~~~~~~~~~~~~---h~~--~v~~v~~s~~~~~~-~~s~~~----------dg~v~~wd 210 (357)
T 4g56_B 148 FSDGTQAVSGG-KDFSVKVWDLSQKAVLKSYNA---HSS--EVNCVAACPGKDTI-FLSCGE----------DGRILLWD 210 (357)
T ss_dssp CSSSSEEEEEE-TTSCEEEEETTTTEEEEEECC---CSS--CEEEEEECTTCSSC-EEEEET----------TSCEEECC
T ss_pred CCCCCEEEEEe-CCCeEEEEECCCCcEEEEEcC---CCC--CEEEEEEccCCCce-eeeecc----------CCceEEEE
Confidence 44555444432 247789999998876543211 111 12233444433322 333221 12688888
Q ss_pred CCCCCcccccccccccccCCCccEEE---CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCc
Q 015511 213 SDTMMWVTSWKEVLTGWRAGDESIIC---DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGR 289 (405)
Q Consensus 213 s~~~~W~~~~~~~~~~~~~~~~~v~~---~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~ 289 (405)
.+++.-..... .........++.. ++.+...+... ..|..||+.+.+-. ........ .-..
T Consensus 211 ~~~~~~~~~~~--~~~~~~~v~~v~~sp~~~~~la~g~~d--------~~i~~wd~~~~~~~-----~~~~~~~~-~v~~ 274 (357)
T 4g56_B 211 TRKPKPATRID--FCASDTIPTSVTWHPEKDDTFACGDET--------GNVSLVNIKNPDSA-----QTSAVHSQ-NITG 274 (357)
T ss_dssp TTSSSCBCBCC--CTTCCSCEEEEEECTTSTTEEEEEESS--------SCEEEEESSCGGGC-----EEECCCSS-CEEE
T ss_pred CCCCceeeeee--eccccccccchhhhhcccceEEEeecc--------cceeEEECCCCcEe-----EEEeccce-eEEE
Confidence 87655332110 0000111122332 34454444322 36888998776521 11111110 0011
Q ss_pred eEE-eCC-cEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEe--eCCCEEEEEeCCCCeE
Q 015511 290 LMN-LKE-KLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASS--GTDDLIYIQSYGAPSL 365 (405)
Q Consensus 290 l~~-~~G-~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~ 365 (405)
+.. -+| ++++.++.+ ..+.||+++..+-. ..+.+ ...+.++. ..++.+++....+..+
T Consensus 275 l~~sp~~~~~lasgs~D--------~~i~iwd~~~~~~~--~~~~H--------~~~V~~vafsP~d~~~l~s~s~Dg~v 336 (357)
T 4g56_B 275 LAYSYHSSPFLASISED--------CTVAVLDADFSEVF--RDLSH--------RDFVTGVAWSPLDHSKFTTVGWDHKV 336 (357)
T ss_dssp EEECSSSSCCEEEEETT--------SCEEEECTTSCEEE--EECCC--------SSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred EEEcCCCCCEEEEEeCC--------CEEEEEECCCCcEe--EECCC--------CCCEEEEEEeCCCCCEEEEEcCCCeE
Confidence 222 244 444444321 45999988765432 22221 12333432 2233334444457789
Q ss_pred EEEECCCC
Q 015511 366 LVYDMNLK 373 (405)
Q Consensus 366 ~~Yd~~~~ 373 (405)
.+||+.++
T Consensus 337 ~iW~~~~~ 344 (357)
T 4g56_B 337 LHHHLPSE 344 (357)
T ss_dssp EEEECC--
T ss_pred EEEECCCC
Confidence 99998654
No 100
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=71.97 E-value=36 Score=33.81 Aligned_cols=117 Identities=14% Similarity=0.087 Sum_probs=64.4
Q ss_pred CccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--chhhhcccccccCCc--------cccCceEEeCCcEEEEEc
Q 015511 233 DESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SHALLIKSFIPVPCA--------LTCGRLMNLKEKLVMVGG 302 (405)
Q Consensus 233 ~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~--------~~~~~l~~~~G~L~~v~~ 302 (405)
..+++.+|.+|+.... ..|.++|..+.+ |+. . ...+.. .....++..+|+||+.+.
T Consensus 64 ~~P~v~~g~vyv~~~~---------~~v~AlD~~tG~~~W~~----~-~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~ 129 (689)
T 1yiq_A 64 ATPIVVDGVMYTTGPF---------SVVYALDARDGRLIWKY----D-PQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL 129 (689)
T ss_dssp CCCEEETTEEEEECGG---------GCEEEEETTTCCEEEEE----C-CCCCGGGGGGCTTCSCCCCCEEETTEEEEECT
T ss_pred ecCEEECCEEEEEcCC---------CeEEEEECCCCceeEEE----c-CCCCccccccccccCCCCccEEECCEEEEEcc
Confidence 3568889999998632 479999997654 542 1 111110 112345667888887653
Q ss_pred cccccccCccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC-----CCCeEEEEECCCCc-
Q 015511 303 IGKQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY-----GAPSLLVYDMNLKQ- 374 (405)
Q Consensus 303 ~~~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~Yd~~~~~- 374 (405)
. ..+..++.++ ..|+.......... ....... ...++.||+... ....++.||.++++
T Consensus 130 d---------g~l~AlDa~TG~~~W~~~~~~~~~~~--~~~~~sP---~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~ 195 (689)
T 1yiq_A 130 D---------GRLEAIDAKTGQRAWSVDTRADHKRS--YTITGAP---RVVNGKVVIGNGGAEFGVRGYVTAYDAETGKE 195 (689)
T ss_dssp T---------SEEEEEETTTCCEEEEEECCSCTTSC--CBCCSCC---EEETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred C---------CEEEEEECCCCCEeeeecCcCCCCCC--ccccCCc---EEECCEEEEEeCCCccCCCCEEEEEECCCCcE
Confidence 1 2355555443 36876543121100 0000011 123677877542 14689999999986
Q ss_pred -EEE
Q 015511 375 -WRW 377 (405)
Q Consensus 375 -w~~ 377 (405)
|+.
T Consensus 196 ~W~~ 199 (689)
T 1yiq_A 196 AWRF 199 (689)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 654
No 101
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=71.75 E-value=46 Score=28.30 Aligned_cols=190 Identities=9% Similarity=-0.001 Sum_probs=92.0
Q ss_pred CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccc
Q 015511 146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEV 225 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~ 225 (405)
...++++||.++ ...+.... ....++..++.. ++++.... ...+.+|+..+++........
T Consensus 49 ~~~i~~~~~~~~-~~~~~~~~------~~~~~l~~~~dg---~l~v~~~~---------~~~i~~~d~~~g~~~~~~~~~ 109 (296)
T 3e5z_A 49 QNRTWAWSDDGQ-LSPEMHPS------HHQNGHCLNKQG---HLIACSHG---------LRRLERQREPGGEWESIADSF 109 (296)
T ss_dssp GTEEEEEETTSC-EEEEESSC------SSEEEEEECTTC---CEEEEETT---------TTEEEEECSTTCCEEEEECEE
T ss_pred CCEEEEEECCCC-eEEEECCC------CCcceeeECCCC---cEEEEecC---------CCeEEEEcCCCCcEEEEeecc
Confidence 367889999988 55554321 112456666644 34443321 137888998787765432111
Q ss_pred cccccCCCccEEE--CcEEEeeEEecC---------CCCCCCccEEEEEECCCCcchhhhcccccccCCcccc-CceE-E
Q 015511 226 LTGWRAGDESIIC--DGVLYFLIYATG---------GGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC-GRLM-N 292 (405)
Q Consensus 226 ~~~~~~~~~~v~~--~g~iy~l~~~~~---------~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l~-~ 292 (405)
..........+.+ +|.+|+.....+ .........|..||+. .+... +. ..... ..++ .
T Consensus 110 ~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~------~~--~~~~~~~gi~~s 180 (296)
T 3e5z_A 110 EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA------PI--RDRVKPNGLAFL 180 (296)
T ss_dssp TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE------EE--CCCSSEEEEEEC
T ss_pred CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEE------ee--cCCCCCccEEEC
Confidence 0000111123333 788887531000 0001112479999987 43221 11 11111 1233 2
Q ss_pred eCCcEEEEEccccccccCccceEEEEEEe-Ccee-EEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEEC
Q 015511 293 LKEKLVMVGGIGKQDRPDIIKGIGIWVLN-GKEW-QEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDM 370 (405)
Q Consensus 293 ~~G~L~~v~~~~~~~~~~~~~~~~vw~l~-~~~W-~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~ 370 (405)
-+|++++.... ...+.+|.++ +++. .....+.. . . ....-+++...| .||+.. ...+.+||+
T Consensus 181 ~dg~~lv~~~~--------~~~i~~~~~~~~g~~~~~~~~~~~---~-~-~~p~~i~~d~~G-~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 181 PSGNLLVSDTG--------DNATHRYCLNARGETEYQGVHFTV---E-P-GKTDGLRVDAGG-LIWASA--GDGVHVLTP 244 (296)
T ss_dssp TTSCEEEEETT--------TTEEEEEEECSSSCEEEEEEEECC---S-S-SCCCSEEEBTTS-CEEEEE--TTEEEEECT
T ss_pred CCCCEEEEeCC--------CCeEEEEEECCCCcCcCCCeEeeC---C-C-CCCCeEEECCCC-CEEEEc--CCeEEEECC
Confidence 36777744331 2468888887 4555 22221110 0 0 011223333344 577765 568999999
Q ss_pred CCCcEEEcc
Q 015511 371 NLKQWRWSH 379 (405)
Q Consensus 371 ~~~~w~~l~ 379 (405)
+.+....+.
T Consensus 245 ~g~~~~~~~ 253 (296)
T 3e5z_A 245 DGDELGRVL 253 (296)
T ss_dssp TSCEEEEEE
T ss_pred CCCEEEEEE
Confidence 876665553
No 102
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=71.73 E-value=47 Score=28.40 Aligned_cols=178 Identities=10% Similarity=0.047 Sum_probs=82.0
Q ss_pred ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccccc
Q 015511 147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVL 226 (405)
Q Consensus 147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~ 226 (405)
+.+.+||..+++....-.. + ......+.+.+.. . .++.++. ...+.+|+..++.-... .
T Consensus 45 g~i~iw~~~~~~~~~~~~~---h--~~~v~~~~~~~~~-~--~l~s~~~---------d~~i~vwd~~~~~~~~~----~ 103 (312)
T 4ery_A 45 KLIKIWGAYDGKFEKTISG---H--KLGISDVAWSSDS-N--LLVSASD---------DKTLKIWDVSSGKCLKT----L 103 (312)
T ss_dssp SCEEEEETTTCCEEEEECC---C--SSCEEEEEECTTS-S--EEEEEET---------TSEEEEEETTTCCEEEE----E
T ss_pred CeEEEEeCCCcccchhhcc---C--CCceEEEEEcCCC-C--EEEEECC---------CCEEEEEECCCCcEEEE----E
Confidence 5677888887776543211 1 1122344555533 2 3333332 13788998876542111 0
Q ss_pred ccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc-CceE-EeCCcEEEEEc
Q 015511 227 TGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC-GRLM-NLKEKLVMVGG 302 (405)
Q Consensus 227 ~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l~-~~~G~L~~v~~ 302 (405)
.........+.+ ++.+.+.+... ..+..||+.+.+-. ..++..... ..+. ..+|++++.+.
T Consensus 104 ~~~~~~v~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (312)
T 4ery_A 104 KGHSNYVFCCNFNPQSNLIVSGSFD--------ESVRIWDVKTGKCL-------KTLPAHSDPVSAVHFNRDGSLIVSSS 168 (312)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETT--------SCEEEEETTTCCEE-------EEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCEEE-------EEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 000111011111 34444444321 36889999876521 111111111 1122 23567766665
Q ss_pred cccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcE
Q 015511 303 IGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQW 375 (405)
Q Consensus 303 ~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w 375 (405)
.+ ..+.+|++...+-.......... .-..+++...++.++... .+..+.+||+++++-
T Consensus 169 ~d--------~~i~~wd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~ 226 (312)
T 4ery_A 169 YD--------GLCRIWDTASGQCLKTLIDDDNP------PVSFVKFSPNGKYILAAT-LDNTLKLWDYSKGKC 226 (312)
T ss_dssp TT--------SCEEEEETTTCCEEEEECCSSCC------CEEEEEECTTSSEEEEEE-TTTEEEEEETTTTEE
T ss_pred CC--------CcEEEEECCCCceeeEEeccCCC------ceEEEEECCCCCEEEEEc-CCCeEEEEECCCCcE
Confidence 32 35999998865432211111000 001123344555555543 466888888887754
No 103
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=71.29 E-value=44 Score=30.53 Aligned_cols=93 Identities=10% Similarity=0.065 Sum_probs=47.7
Q ss_pred cEEEEEECCCCcchhhhcccccccCCc--cccCceE-EeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChh
Q 015511 258 HGLISFNLSSRSSHALLIKSFIPVPCA--LTCGRLM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHK 334 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~--~~~~~l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~ 334 (405)
..|..+|++++.... ...... .....+. .-+|+++++++.. ..+.+|+++... +..+.
T Consensus 187 ~~v~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~g~~d--------g~i~~wd~~~~~---~~~~~-- 247 (435)
T 4e54_B 187 GTTRLQDFKGNILRV------FASSDTINIWFCSLDVSASSRMVVTGDNV--------GNVILLNMDGKE---LWNLR-- 247 (435)
T ss_dssp SCEEEEETTSCEEEE------EECCSSCSCCCCCEEEETTTTEEEEECSS--------SBEEEEESSSCB---CCCSB--
T ss_pred CEEEEeeccCCceeE------EeccCCCCccEEEEEECCCCCEEEEEeCC--------CcEeeeccCcce---eEEEe--
Confidence 368889998766431 111111 1111232 3367777776532 458999887532 11111
Q ss_pred HHhccCCCCceeEE--eeCCCEEEEEeCCCCeEEEEECCCCc
Q 015511 335 FFQGFGEFDDVFAS--SGTDDLIYIQSYGAPSLLVYDMNLKQ 374 (405)
Q Consensus 335 ~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~Yd~~~~~ 374 (405)
+....+.++ ...++.+++....+..+.+||+++.+
T Consensus 248 -----~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~ 284 (435)
T 4e54_B 248 -----MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR 284 (435)
T ss_dssp -----CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred -----cccceEEeeeecCCCceEEEEecCcceeeEEeccccc
Confidence 001123333 33455555544456788899998764
No 104
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=69.44 E-value=50 Score=27.78 Aligned_cols=194 Identities=12% Similarity=0.084 Sum_probs=96.6
Q ss_pred EEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEE
Q 015511 130 FIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIH 209 (405)
Q Consensus 130 ~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~ 209 (405)
+....+|-+++... ....+.++|+. ++...++.+.. .....++..++.. .+++.... ...+.
T Consensus 25 i~~d~~g~l~v~~~-~~~~v~~~~~~-~~~~~~~~~~~----~~~~~~i~~~~~g---~l~v~~~~---------~~~v~ 86 (300)
T 2qc5_A 25 ITSSEDGKVWFTQH-KANKISSLDQS-GRIKEFEVPTP----DAKVMCLIVSSLG---DIWFTENG---------ANKIG 86 (300)
T ss_dssp EEECTTSCEEEEET-TTTEEEEECTT-SCEEEEECSST----TCCEEEEEECTTS---CEEEEETT---------TTEEE
T ss_pred eeECCCCCEEEEcC-CCCeEEEECCC-CceEEEECCCC----CCcceeEEECCCC---CEEEEecC---------CCeEE
Confidence 34445677777653 24778999998 77766543211 1122455555443 34443321 12677
Q ss_pred EEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc
Q 015511 210 IYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC 287 (405)
Q Consensus 210 vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~ 287 (405)
.|+.. +.......+ ... .....+.+ +|.+|+.... ...|..||+. .+... ...+.....
T Consensus 87 ~~d~~-g~~~~~~~~--~~~-~~~~~i~~~~~g~l~v~~~~--------~~~i~~~~~~-g~~~~------~~~~~~~~~ 147 (300)
T 2qc5_A 87 KLSKK-GGFTEYPLP--QPD-SGPYGITEGLNGDIWFTQLN--------GDRIGKLTAD-GTIYE------YDLPNKGSY 147 (300)
T ss_dssp EECTT-SCEEEEECS--STT-CCEEEEEECSTTCEEEEETT--------TTEEEEECTT-SCEEE------EECSSTTCC
T ss_pred EECCC-CCeEEecCC--CCC-CCCccceECCCCCEEEEccC--------CCeEEEECCC-CCEEE------ccCCCCCCC
Confidence 88876 665432211 000 11123333 6788776521 2479999987 44321 122221111
Q ss_pred -CceEE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEe-eCCCEEEEEeCCCCe
Q 015511 288 -GRLMN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASS-GTDDLIYIQSYGAPS 364 (405)
Q Consensus 288 -~~l~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~ 364 (405)
..++. .+|+|++.... ...+.++.. +++...+. ++... ..+.++. ..++.+|+.......
T Consensus 148 ~~~i~~d~~g~l~v~~~~--------~~~i~~~~~-~g~~~~~~-~~~~~-------~~~~~i~~d~~g~l~v~~~~~~~ 210 (300)
T 2qc5_A 148 PAFITLGSDNALWFTENQ--------NNSIGRITN-TGKLEEYP-LPTNA-------AAPVGITSGNDGALWFVEIMGNK 210 (300)
T ss_dssp EEEEEECTTSSEEEEETT--------TTEEEEECT-TCCEEEEE-CSSTT-------CCEEEEEECTTSSEEEEETTTTE
T ss_pred ceeEEECCCCCEEEEecC--------CCeEEEECC-CCcEEEee-CCCCC-------CCcceEEECCCCCEEEEccCCCE
Confidence 12333 46888877642 123444444 44444432 22111 1223332 224567777655567
Q ss_pred EEEEECCCCcEEEc
Q 015511 365 LLVYDMNLKQWRWS 378 (405)
Q Consensus 365 ~~~Yd~~~~~w~~l 378 (405)
+.+||+ ++++..+
T Consensus 211 i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 211 IGRITT-TGEISEY 223 (300)
T ss_dssp EEEECT-TCCEEEE
T ss_pred EEEEcC-CCcEEEE
Confidence 999998 6666654
No 105
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=69.31 E-value=81 Score=30.10 Aligned_cols=104 Identities=14% Similarity=0.195 Sum_probs=59.7
Q ss_pred cEEEEEECCCCcchhhhcccccccCCccccCceEEe-CCcEEEEEccccccccCccceEEEEEEeCc-----eeEEEecc
Q 015511 258 HGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNL-KEKLVMVGGIGKQDRPDIIKGIGIWVLNGK-----EWQEVARM 331 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~-~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~-----~W~~v~~i 331 (405)
..|..+|+.+.+-... ......|.......+..- +|.+++.+..+ ..++.||..+.. .|+.+..+
T Consensus 346 ~~v~v~D~~tg~l~~~--i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~-------d~~V~v~d~~~~~~~~~~~~~v~~l 416 (543)
T 1nir_A 346 NKVAVIDSKDRRLSAL--VDVGKTPHPGRGANFVHPKYGPVWSTSHLG-------DGSISLIGTDPKNHPQYAWKKVAEL 416 (543)
T ss_dssp TEEEEEETTTTEEEEE--EECSSSBCCTTCEEEEETTTEEEEEEEBSS-------SSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred CeEEEEECCCCeEEEe--eccCCCCCCCCCcccCCCCCccEEEeccCC-------CceEEEEEeCCCCCchhcCeEEEEE
Confidence 4788899998763211 111112221111112222 36777665422 246999999862 48888776
Q ss_pred ChhHHhccCCCCceeEEeeCCCEEEEEeC-C-----CCeEEEEECCCCcE
Q 015511 332 PHKFFQGFGEFDDVFASSGTDDLIYIQSY-G-----APSLLVYDMNLKQW 375 (405)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~-----~~~~~~Yd~~~~~w 375 (405)
+-. +.....+.....+..+|+... . ...+.+||.++.+-
T Consensus 417 ~~~-----g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 417 QGQ-----GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp ECS-----CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred EcC-----CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence 521 011123455678999999652 1 45899999998864
No 106
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=68.99 E-value=19 Score=31.33 Aligned_cols=72 Identities=10% Similarity=0.104 Sum_probs=45.0
Q ss_pred EeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECC
Q 015511 292 NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMN 371 (405)
Q Consensus 292 ~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~ 371 (405)
..++++++.... ...+.+|+++..+......++.. + ....+++...|+.+|+.......+.+||++
T Consensus 8 ~~~~~~~v~~~~--------~~~v~~~d~~~~~~~~~~~~~~~----~--~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~ 73 (349)
T 1jmx_B 8 KAGHEYMIVTNY--------PNNLHVVDVASDTVYKSCVMPDK----F--GPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 73 (349)
T ss_dssp CTTCEEEEEEET--------TTEEEEEETTTTEEEEEEECSSC----C--SSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred cCCCEEEEEeCC--------CCeEEEEECCCCcEEEEEecCCC----C--CCceeEECCCCCEEEEEeCCCCcEEEEeCC
Confidence 345677776653 24588888877655443333320 0 012344556778888887667789999999
Q ss_pred CCcEEE
Q 015511 372 LKQWRW 377 (405)
Q Consensus 372 ~~~w~~ 377 (405)
+++...
T Consensus 74 t~~~~~ 79 (349)
T 1jmx_B 74 TCKNTF 79 (349)
T ss_dssp TTEEEE
T ss_pred CCcEEE
Confidence 987653
No 107
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=68.13 E-value=60 Score=28.19 Aligned_cols=175 Identities=12% Similarity=0.024 Sum_probs=84.9
Q ss_pred CceEEEEeCcccceee-ccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccc
Q 015511 146 RSELYVCNPISKSWKK-LEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKE 224 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~ 224 (405)
+..+.+||..+++... +...+ .....+.+.|.. +.++.++. .-.+.+|+..++.=....
T Consensus 101 D~~i~lWd~~~~~~~~~~~~~~------~~~~~~~~spdg---~~l~~g~~---------dg~v~i~~~~~~~~~~~~-- 160 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIKSIDAGP------VDAWTLAFSPDS---QYLATGTH---------VGKVNIFGVESGKKEYSL-- 160 (321)
T ss_dssp TSEEEEEETTTTEEEEEEECCT------TCCCCEEECTTS---SEEEEECT---------TSEEEEEETTTCSEEEEE--
T ss_pred CCcEEEEECCCCCEEEEEeCCC------ccEEEEEECCCC---CEEEEEcC---------CCcEEEEEcCCCceeEEe--
Confidence 4789999998876543 22111 111234444543 23333322 136788887655421110
Q ss_pred ccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc-CceEE-eCCcEEEE
Q 015511 225 VLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC-GRLMN-LKEKLVMV 300 (405)
Q Consensus 225 ~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l~~-~~G~L~~v 300 (405)
.........+.+ +|...+.+... ..|..||+.+.+-. ..+...... ..+.. -+|++++.
T Consensus 161 --~~~~~~v~~~~~spdg~~lasg~~d--------g~i~iwd~~~~~~~-------~~~~~h~~~v~~l~~spd~~~l~s 223 (321)
T 3ow8_A 161 --DTRGKFILSIAYSPDGKYLASGAID--------GIINIFDIATGKLL-------HTLEGHAMPIRSLTFSPDSQLLVT 223 (321)
T ss_dssp --ECSSSCEEEEEECTTSSEEEEEETT--------SCEEEEETTTTEEE-------EEECCCSSCCCEEEECTTSCEEEE
T ss_pred --cCCCceEEEEEECCCCCEEEEEcCC--------CeEEEEECCCCcEE-------EEEcccCCceeEEEEcCCCCEEEE
Confidence 000000112222 55555554322 36888999876521 111111111 12222 35677666
Q ss_pred EccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeE--EeeCCCEEEEEeCCCCeEEEEECCCCcE
Q 015511 301 GGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFA--SSGTDDLIYIQSYGAPSLLVYDMNLKQW 375 (405)
Q Consensus 301 ~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~Yd~~~~~w 375 (405)
++.+ ..+.+|++...+-... +.. ....+.+ +...+..++.. ..+..+.+||+++++-
T Consensus 224 ~s~d--------g~i~iwd~~~~~~~~~--~~~-------h~~~v~~~~~sp~~~~l~s~-s~D~~v~iwd~~~~~~ 282 (321)
T 3ow8_A 224 ASDD--------GYIKIYDVQHANLAGT--LSG-------HASWVLNVAFCPDDTHFVSS-SSDKSVKVWDVGTRTC 282 (321)
T ss_dssp ECTT--------SCEEEEETTTCCEEEE--ECC-------CSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEE
T ss_pred EcCC--------CeEEEEECCCcceeEE--EcC-------CCCceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCEE
Confidence 6532 4599999886543321 110 0112333 33455555544 3567899999988754
No 108
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=67.49 E-value=61 Score=28.02 Aligned_cols=25 Identities=12% Similarity=-0.096 Sum_probs=16.4
Q ss_pred eeCCCEEEEEeCCCCeEEEEECCCC
Q 015511 349 SGTDDLIYIQSYGAPSLLVYDMNLK 373 (405)
Q Consensus 349 ~~~~~~i~~~~~~~~~~~~Yd~~~~ 373 (405)
...+..+++....+..+.+||+.+.
T Consensus 330 s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 330 SPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cCCCCeEEEEecCCCcEEEEECCCc
Confidence 4456666644445778999998764
No 109
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=67.45 E-value=70 Score=28.67 Aligned_cols=224 Identities=12% Similarity=0.008 Sum_probs=102.9
Q ss_pred eeEEecCCCCeeeeccCCCCCCCCe-EEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCC
Q 015511 105 IGYAYDPILRKWYGIELPCIETSNW-FIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRV 183 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~p~~~~~~~-~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~ 183 (405)
....+|...++.............. +.-+.+|-.++.+. ....+.+||..+++....-.. + ......+..++
T Consensus 114 ~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~---~--~~~v~~~~~~~- 186 (401)
T 4aez_A 114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL-GNGLVDIYDVESQTKLRTMAG---H--QARVGCLSWNR- 186 (401)
T ss_dssp EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEEECC---C--SSCEEEEEEET-
T ss_pred eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC-CCCeEEEEECcCCeEEEEecC---C--CCceEEEEECC-
Confidence 4556666655433221111111122 22233454443332 246889999988765443211 1 11123334443
Q ss_pred CCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEE
Q 015511 184 SHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLI 261 (405)
Q Consensus 184 ~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~ 261 (405)
. .++.++. .-.+.+|+.....-... . ..........+.. +|...+.+... ..+.
T Consensus 187 --~--~l~~~~~---------dg~i~i~d~~~~~~~~~--~-~~~~~~~v~~~~~~~~~~~l~s~~~d--------~~v~ 242 (401)
T 4aez_A 187 --H--VLSSGSR---------SGAIHHHDVRIANHQIG--T-LQGHSSEVCGLAWRSDGLQLASGGND--------NVVQ 242 (401)
T ss_dssp --T--EEEEEET---------TSEEEEEETTSSSCEEE--E-EECCSSCEEEEEECTTSSEEEEEETT--------SCEE
T ss_pred --C--EEEEEcC---------CCCEEEEecccCcceee--E-EcCCCCCeeEEEEcCCCCEEEEEeCC--------CeEE
Confidence 2 3333332 23788898764321110 0 1111111122222 55555555432 3789
Q ss_pred EEECCCCcchhhhcccccccCCcccc-CceEEe--CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhc
Q 015511 262 SFNLSSRSSHALLIKSFIPVPCALTC-GRLMNL--KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQG 338 (405)
Q Consensus 262 ~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l~~~--~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~ 338 (405)
.||+.+.+-. ......... ..+... ++.|++.++.. ....+.+|++...+-..........
T Consensus 243 iwd~~~~~~~-------~~~~~~~~~v~~~~~~p~~~~ll~~~~gs------~d~~i~i~d~~~~~~~~~~~~~~~v--- 306 (401)
T 4aez_A 243 IWDARSSIPK-------FTKTNHNAAVKAVAWCPWQSNLLATGGGT------MDKQIHFWNAATGARVNTVDAGSQV--- 306 (401)
T ss_dssp EEETTCSSEE-------EEECCCSSCCCEEEECTTSTTEEEEECCT------TTCEEEEEETTTCCEEEEEECSSCE---
T ss_pred EccCCCCCcc-------EEecCCcceEEEEEECCCCCCEEEEecCC------CCCEEEEEECCCCCEEEEEeCCCcE---
Confidence 9999875521 111111111 123322 34666665311 1245999998865433222111100
Q ss_pred cCCCCceeEEeeCCCEEEEEe-CCCCeEEEEECCCCcEEEccC
Q 015511 339 FGEFDDVFASSGTDDLIYIQS-YGAPSLLVYDMNLKQWRWSHK 380 (405)
Q Consensus 339 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~Yd~~~~~w~~l~~ 380 (405)
..+++...+..++... ..+..+.+||+.+++...+..
T Consensus 307 -----~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~ 344 (401)
T 4aez_A 307 -----TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD 344 (401)
T ss_dssp -----EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE
T ss_pred -----EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE
Confidence 1123345666666653 356789999999887766543
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=67.43 E-value=69 Score=28.64 Aligned_cols=203 Identities=5% Similarity=-0.055 Sum_probs=89.1
Q ss_pred EecCceEEEEeCCCCceEEEEeCccccee--eccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEE
Q 015511 132 ASSYGLVCFMDNDSRSELYVCNPISKSWK--KLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIH 209 (405)
Q Consensus 132 ~s~~Gll~~~~~~~~~~~~v~NP~T~~~~--~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~ 209 (405)
.+..+..++......+.+.|||..+..-. .++.+ ....-....+.+.+..+.+ ++.++. .-.+.
T Consensus 42 ~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~---~~h~~~V~~~~~~p~~~~~--l~s~s~---------dg~v~ 107 (402)
T 2aq5_A 42 VNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLV---CGHTAPVLDIAWCPHNDNV--IASGSE---------DCTVM 107 (402)
T ss_dssp ECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCB---CCCSSCEEEEEECTTCTTE--EEEEET---------TSEEE
T ss_pred ECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceE---ecCCCCEEEEEeCCCCCCE--EEEEeC---------CCeEE
Confidence 33344444433334577889987543221 12211 1111223455565533333 333332 13789
Q ss_pred EEeCCCCCcccccccccccccC---CCccEEE--Cc-EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCC
Q 015511 210 IYDSDTMMWVTSWKEVLTGWRA---GDESIIC--DG-VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPC 283 (405)
Q Consensus 210 vy~s~~~~W~~~~~~~~~~~~~---~~~~v~~--~g-~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~ 283 (405)
+|+..++............... ....+.. +| .+.+.+... ..|..+|+.+.+... .+....
T Consensus 108 vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d--------g~i~iwd~~~~~~~~-----~~~~~~ 174 (402)
T 2aq5_A 108 VWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD--------NVILVWDVGTGAAVL-----TLGPDV 174 (402)
T ss_dssp EEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT--------SCEEEEETTTTEEEE-----EECTTT
T ss_pred EEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC--------CEEEEEECCCCCccE-----EEecCC
Confidence 9998877553321111111111 1112222 33 344444322 368999998776321 111011
Q ss_pred ccccC-ceEE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEe--
Q 015511 284 ALTCG-RLMN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQS-- 359 (405)
Q Consensus 284 ~~~~~-~l~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~-- 359 (405)
..... .+.. -+|++++++..+ ..+.+|++...+-.......+.-. ....+.+...+..+....
T Consensus 175 ~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~g~~~ 241 (402)
T 2aq5_A 175 HPDTIYSVDWSRDGALICTSCRD--------KRVRVIEPRKGTVVAEKDRPHEGT-----RPVHAVFVSEGKILTTGFSR 241 (402)
T ss_dssp CCSCEEEEEECTTSSCEEEEETT--------SEEEEEETTTTEEEEEEECSSCSS-----SCCEEEECSTTEEEEEEECT
T ss_pred CCCceEEEEECCCCCEEEEEecC--------CcEEEEeCCCCceeeeeccCCCCC-----cceEEEEcCCCcEEEEeccC
Confidence 11111 1222 256666665432 459999988754332221111000 001122233444333331
Q ss_pred CCCCeEEEEECCCCc
Q 015511 360 YGAPSLLVYDMNLKQ 374 (405)
Q Consensus 360 ~~~~~~~~Yd~~~~~ 374 (405)
..+..+.+||+++.+
T Consensus 242 ~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 242 MSERQVALWDTKHLE 256 (402)
T ss_dssp TCCEEEEEEETTBCS
T ss_pred CCCceEEEEcCcccc
Confidence 356788899988753
No 111
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=66.87 E-value=1.1e+02 Score=30.53 Aligned_cols=181 Identities=12% Similarity=0.072 Sum_probs=86.3
Q ss_pred CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccc
Q 015511 146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEV 225 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~ 225 (405)
...+.|||..+++....-.. + .-....+.+.+.. .+ ++ .++. .-.+.+|+..++ |.... .
T Consensus 76 dg~i~vw~~~~~~~~~~~~~---~--~~~v~~~~~s~~~-~~-l~-~~~~---------dg~i~vw~~~~~-~~~~~--~ 135 (814)
T 3mkq_A 76 DFRIRVFNYNTGEKVVDFEA---H--PDYIRSIAVHPTK-PY-VL-SGSD---------DLTVKLWNWENN-WALEQ--T 135 (814)
T ss_dssp TSEEEEEETTTCCEEEEEEC---C--SSCEEEEEECSSS-SE-EE-EEET---------TSEEEEEEGGGT-SEEEE--E
T ss_pred CCeEEEEECCCCcEEEEEec---C--CCCEEEEEEeCCC-CE-EE-EEcC---------CCEEEEEECCCC-ceEEE--E
Confidence 47899999998876543211 1 1112344444433 22 33 3321 127888887654 21111 0
Q ss_pred cccccCCCccEEE---CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEe---CCcEEE
Q 015511 226 LTGWRAGDESIIC---DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNL---KEKLVM 299 (405)
Q Consensus 226 ~~~~~~~~~~v~~---~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~---~G~L~~ 299 (405)
..........+.. +|...+.+... ..|..||+.+..-.. ............+... +|.+++
T Consensus 136 ~~~~~~~v~~~~~~p~~~~~l~~~~~d--------g~v~vwd~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLD--------RTVKVWSLGQSTPNF-----TLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEETT--------SEEEEEETTCSSCSE-----EEECCCTTCCCEEEECCSTTCCEEE
T ss_pred EcCCCCcEEEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCccee-----EEecCCCCCEEEEEEEECCCCCEEE
Confidence 1111111122222 35555554322 479999987655221 1111110111122222 677776
Q ss_pred EEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCce--eEEeeCCCEEEEEeCCCCeEEEEECCCCcEEE
Q 015511 300 VGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDV--FASSGTDDLIYIQSYGAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 300 v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~ 377 (405)
+++.+ ..+.+|++...+-.....-. ...+ +++...++.++... .+..+.+||+.+++-..
T Consensus 203 ~~~~d--------g~i~~~d~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~~~ 264 (814)
T 3mkq_A 203 TASDD--------LTIKIWDYQTKSCVATLEGH---------MSNVSFAVFHPTLPIIISGS-EDGTLKIWNSSTYKVEK 264 (814)
T ss_dssp EECTT--------SEEEEEETTTTEEEEEEECC---------SSCEEEEEECSSSSEEEEEE-TTSCEEEEETTTCSEEE
T ss_pred EEeCC--------CEEEEEECCCCcEEEEEcCC---------CCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEE
Confidence 66532 45999988765422211111 0112 23344566555544 46789999998875543
No 112
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=66.65 E-value=1.1e+02 Score=30.82 Aligned_cols=112 Identities=10% Similarity=-0.003 Sum_probs=57.5
Q ss_pred CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEE--eCCcEEEEEccccccccCccceEE
Q 015511 239 DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMN--LKEKLVMVGGIGKQDRPDIIKGIG 316 (405)
Q Consensus 239 ~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~--~~G~L~~v~~~~~~~~~~~~~~~~ 316 (405)
++.|||.... ...|.++|+....-..+. ...+..| ..|++ .+|.||+..... ...|.
T Consensus 482 ~~~LY~tD~~--------~~~I~v~~ldG~~~~~l~-~~~l~~P-----~gIaVDp~~g~LYwtD~g~-------~~~I~ 540 (791)
T 3m0c_C 482 HSNIYWTDSV--------LGTVSVADTKGVKRKTLF-RENGSKP-----RAIVVDPVHGFMYWTDWGT-------PAKIK 540 (791)
T ss_dssp TTEEEEEETT--------TTEEEEEETTSSSEEEEE-ECTTCCE-----EEEEEETTTTEEEEEECSS-------SCEEE
T ss_pred CCcEEEEecC--------CCeEEEEeCCCCeEEEEE-eCCCCCc-----ceEEEecCCCCEEEecCCC-------CCeEE
Confidence 5799998632 258999999765422110 0011112 23554 358899876311 13466
Q ss_pred EEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEc
Q 015511 317 IWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWS 378 (405)
Q Consensus 317 vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l 378 (405)
+..++...=+.+.. ..+. ...-+++...++.||+.......|.++|++...-+.+
T Consensus 541 ~~~~dG~~~~~lv~--~~l~-----~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v 595 (791)
T 3m0c_C 541 KGGLNGVDIYSLVT--ENIQ-----WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 595 (791)
T ss_dssp EEETTSCCEEEEEC--SSCS-----CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred EEecCCCceEEEEe--CCCC-----CceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence 66555432222111 0000 1122333445778888766666788888776544444
No 113
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=66.58 E-value=69 Score=28.28 Aligned_cols=190 Identities=9% Similarity=-0.044 Sum_probs=85.7
Q ss_pred ecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015511 133 SSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD 212 (405)
Q Consensus 133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~ 212 (405)
+.+|-.++.+. ....+.+||..+++....-.- +. .....+.+.+.... +++.++. ...+.+||
T Consensus 136 spdg~~l~sgs-~d~~i~iwd~~~~~~~~~~~~---h~--~~V~~~~~~~~~~~--~l~s~s~---------D~~v~iwd 198 (344)
T 4gqb_B 136 LSSGTQAVSGS-KDICIKVWDLAQQVVLSSYRA---HA--AQVTCVAASPHKDS--VFLSCSE---------DNRILLWD 198 (344)
T ss_dssp CTTSSEEEEEE-TTSCEEEEETTTTEEEEEECC---CS--SCEEEEEECSSCTT--EEEEEET---------TSCEEEEE
T ss_pred CCCCCEEEEEe-CCCeEEEEECCCCcEEEEEcC---cC--CceEEEEecCCCCC--ceeeecc---------cccccccc
Confidence 34555444432 247799999999876543211 11 11233444443322 2333321 12688999
Q ss_pred CCCCCcccccccccccccCCCccEEE---CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccC-
Q 015511 213 SDTMMWVTSWKEVLTGWRAGDESIIC---DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCG- 288 (405)
Q Consensus 213 s~~~~W~~~~~~~~~~~~~~~~~v~~---~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~- 288 (405)
.++++-...-.. ........++.. ++.+.+.+... ..|..||+.+.+-- ..+.......
T Consensus 199 ~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~l~sg~~d--------g~v~~wd~~~~~~~-------~~~~~h~~~v~ 261 (344)
T 4gqb_B 199 TRCPKPASQIGC--SAPGYLPTSLAWHPQQSEVFVFGDEN--------GTVSLVDTKSTSCV-------LSSAVHSQCVT 261 (344)
T ss_dssp TTSSSCEEECC------CCCEEEEEECSSCTTEEEEEETT--------SEEEEEESCC--CC-------EEEECCSSCEE
T ss_pred ccccceeeeeec--ceeeccceeeeecCCCCcceEEeccC--------CcEEEEECCCCcEE-------EEEcCCCCCEE
Confidence 876653221100 000000112222 34444444322 36888998876521 1111111111
Q ss_pred ceEEe-CC-cEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEE--eeCCCEEEEEeCCCCe
Q 015511 289 RLMNL-KE-KLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFAS--SGTDDLIYIQSYGAPS 364 (405)
Q Consensus 289 ~l~~~-~G-~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~ 364 (405)
.+... +| ++++.++.+ ..+.||++..++-... ..+ ...+.++ ...++.++.....+..
T Consensus 262 ~v~fsp~g~~~lasgs~D--------~~i~vwd~~~~~~~~~--~~H--------~~~V~~v~~sp~~~~llas~s~D~~ 323 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSED--------CSLAVLDSSLSELFRS--QAH--------RDFVRDATWSPLNHSLLTTVGWDHQ 323 (344)
T ss_dssp EEEECSSSSCCEEEEETT--------SCEEEECTTCCEEEEE--CCC--------SSCEEEEEECSSSTTEEEEEETTSC
T ss_pred EEEEccCCCeEEEEEeCC--------CeEEEEECCCCcEEEE--cCC--------CCCEEEEEEeCCCCeEEEEEcCCCe
Confidence 12222 34 444444321 4599998776542211 111 1233333 3456555555446788
Q ss_pred EEEEECCCCc
Q 015511 365 LLVYDMNLKQ 374 (405)
Q Consensus 365 ~~~Yd~~~~~ 374 (405)
+.+|++.++.
T Consensus 324 v~~w~v~~~~ 333 (344)
T 4gqb_B 324 VVHHVVPTEP 333 (344)
T ss_dssp EEEEECCC--
T ss_pred EEEEECCCCC
Confidence 9999998764
No 114
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=65.88 E-value=62 Score=29.83 Aligned_cols=113 Identities=7% Similarity=0.085 Sum_probs=59.8
Q ss_pred CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceE-EeCCc-EEEEEccccccccCccceEE
Q 015511 239 DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEK-LVMVGGIGKQDRPDIIKGIG 316 (405)
Q Consensus 239 ~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~-L~~v~~~~~~~~~~~~~~~~ 316 (405)
+|.||+.... ..|..||+.+.....+ .. .. .....+. ..+|+ ||+....... .....
T Consensus 149 ~g~Lyv~d~~---------~~I~~id~~~~~v~~~-----~~-~~-~~P~~ia~d~~G~~lyvad~~~~~-----~~~~v 207 (430)
T 3tc9_A 149 HNHLYLVGEQ---------HPTRLIDFEKEYVSTV-----YS-GL-SKVRTICWTHEADSMIITNDQNNN-----DRPNN 207 (430)
T ss_dssp EEEEEEEEBT---------EEEEEEETTTTEEEEE-----EC-CC-SCEEEEEECTTSSEEEEEECCSCT-----TSEEE
T ss_pred CCeEEEEeCC---------CcEEEEECCCCEEEEE-----ec-CC-CCcceEEEeCCCCEEEEEeCCCCc-----ccceE
Confidence 3889988631 5899999998775422 11 11 1111233 23566 8877653211 12222
Q ss_pred EEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEc
Q 015511 317 IWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWS 378 (405)
Q Consensus 317 vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l 378 (405)
+|...+..|.....++. +. ...-+++...++.||+.......+..||++++....+
T Consensus 208 ~~~~~~g~~~~~~~l~~-----~~-~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~ 263 (430)
T 3tc9_A 208 YILTRESGFKVITELTK-----GQ-NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL 263 (430)
T ss_dssp EEEEGGGTSCSEEEEEE-----CS-SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEeCCCceeeeeeecc-----CC-CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 33333444542111110 10 1122344444677888876677999999998876443
No 115
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=65.57 E-value=69 Score=27.92 Aligned_cols=26 Identities=15% Similarity=0.056 Sum_probs=17.4
Q ss_pred eeCCCEEEEEeCCCCeEEEEECCCCcE
Q 015511 349 SGTDDLIYIQSYGAPSLLVYDMNLKQW 375 (405)
Q Consensus 349 ~~~~~~i~~~~~~~~~~~~Yd~~~~~w 375 (405)
...++.++... .+..+.+||+++++-
T Consensus 211 ~~~~~~l~~~~-~d~~i~i~d~~~~~~ 236 (372)
T 1k8k_C 211 SANGSRVAWVS-HDSTVCLADADKKMA 236 (372)
T ss_dssp CSSSSEEEEEE-TTTEEEEEEGGGTTE
T ss_pred CCCCCEEEEEe-CCCEEEEEECCCCce
Confidence 34555655544 567899999987754
No 116
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=65.04 E-value=55 Score=29.80 Aligned_cols=68 Identities=18% Similarity=0.312 Sum_probs=44.4
Q ss_pred cceEEEEEEeCc--eeEEEeccChhHHhccCCCCceeEEe-------eCCCEEEEEeCCCCeEEEEECCCC-cEEEccC
Q 015511 312 IKGIGIWVLNGK--EWQEVARMPHKFFQGFGEFDDVFASS-------GTDDLIYIQSYGAPSLLVYDMNLK-QWRWSHK 380 (405)
Q Consensus 312 ~~~~~vw~l~~~--~W~~v~~i~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~Yd~~~~-~w~~l~~ 380 (405)
...+-+|+|..+ +=.+...+|......- ..-.-+.+. ..+..+||.......++|||+.++ .|+.+..
T Consensus 122 ~pkLv~~DL~t~~~~li~~y~~p~~~~~~~-S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~ 199 (381)
T 3q6k_A 122 RPAIVAYDLKQPNYPEVVRYYFPTRLVEKP-TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHP 199 (381)
T ss_dssp CCEEEEEESSSTTCCEEEEEECCGGGCCCG-GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECG
T ss_pred CceEEEEECCCCCceeEEEEECCHHhcccC-CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccC
Confidence 456888888887 7777888886543210 000112222 126789998877789999999987 6776643
No 117
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=64.50 E-value=70 Score=27.61 Aligned_cols=210 Identities=15% Similarity=0.156 Sum_probs=97.6
Q ss_pred ecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015511 133 SSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD 212 (405)
Q Consensus 133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~ 212 (405)
+.+|-+++.+.. ...++++|+.+++...+..... ....++..++.. ++++...... . ....+.+|+
T Consensus 53 ~~~g~l~~~~~~-~~~i~~~d~~~~~~~~~~~~~~-----~~~~~i~~~~dg---~l~v~~~~~~-~----~~~~i~~~d 118 (333)
T 2dg1_A 53 DRQGQLFLLDVF-EGNIFKINPETKEIKRPFVSHK-----ANPAAIKIHKDG---RLFVCYLGDF-K----STGGIFAAT 118 (333)
T ss_dssp CTTSCEEEEETT-TCEEEEECTTTCCEEEEEECSS-----SSEEEEEECTTS---CEEEEECTTS-S----SCCEEEEEC
T ss_pred CCCCCEEEEECC-CCEEEEEeCCCCcEEEEeeCCC-----CCcceEEECCCC---cEEEEeCCCC-C----CCceEEEEe
Confidence 345666655432 3689999999998876532111 122355566543 3444332110 0 013678888
Q ss_pred CCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCce
Q 015511 213 SDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRL 290 (405)
Q Consensus 213 s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l 290 (405)
..++.-......... ......+.+ +|.+|+..... ........|..+|+.+.+...+ .. .. .....+
T Consensus 119 ~~~~~~~~~~~~~~~--~~~~~~i~~d~~g~l~v~~~~~--~~~~~~~~l~~~~~~~~~~~~~-----~~-~~-~~~~~i 187 (333)
T 2dg1_A 119 ENGDNLQDIIEDLST--AYCIDDMVFDSKGGFYFTDFRG--YSTNPLGGVYYVSPDFRTVTPI-----IQ-NI-SVANGI 187 (333)
T ss_dssp TTSCSCEEEECSSSS--CCCEEEEEECTTSCEEEEECCC--BTTBCCEEEEEECTTSCCEEEE-----EE-EE-SSEEEE
T ss_pred CCCCEEEEEEccCcc--CCcccceEECCCCCEEEEeccc--cccCCCceEEEEeCCCCEEEEe-----ec-CC-Ccccce
Confidence 876654321110000 001122333 67777754211 0011135799999887654321 10 00 001123
Q ss_pred E-EeCCc-EEEEEccccccccCccceEEEEEEeC--ceeEEEe-ccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeE
Q 015511 291 M-NLKEK-LVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQEVA-RMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSL 365 (405)
Q Consensus 291 ~-~~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~v~-~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 365 (405)
. .-+|+ ||+.... ...+.+|.++. .....+. .+... +... ....-+++.. ++.+|+.......+
T Consensus 188 ~~~~dg~~l~v~~~~--------~~~i~~~d~~~~g~~~~~~~~~~~~~-~~~~-~~~~~i~~d~-~G~l~v~~~~~~~v 256 (333)
T 2dg1_A 188 ALSTDEKVLWVTETT--------ANRLHRIALEDDGVTIQPFGATIPYY-FTGH-EGPDSCCIDS-DDNLYVAMYGQGRV 256 (333)
T ss_dssp EECTTSSEEEEEEGG--------GTEEEEEEECTTSSSEEEEEEEEEEE-CCSS-SEEEEEEEBT-TCCEEEEEETTTEE
T ss_pred EECCCCCEEEEEeCC--------CCeEEEEEecCCCcCcccccceEEEe-cCCC-CCCCceEECC-CCCEEEEEcCCCEE
Confidence 2 23565 6666532 24588888863 2232211 00000 0000 0001122233 34577765445689
Q ss_pred EEEECCCCcEEEc
Q 015511 366 LVYDMNLKQWRWS 378 (405)
Q Consensus 366 ~~Yd~~~~~w~~l 378 (405)
.+||++.+....+
T Consensus 257 ~~~d~~g~~~~~~ 269 (333)
T 2dg1_A 257 LVFNKRGYPIGQI 269 (333)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEECCCCCEEEEE
Confidence 9999976655555
No 118
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=63.81 E-value=69 Score=27.31 Aligned_cols=182 Identities=11% Similarity=0.053 Sum_probs=83.9
Q ss_pred CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccc
Q 015511 146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEV 225 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~ 225 (405)
...+.+||..+++....-.. + ......+.+.+.. . .++.++. ...+.+||..++.-...
T Consensus 86 d~~i~vwd~~~~~~~~~~~~---~--~~~v~~~~~~~~~-~--~l~s~~~---------d~~i~iwd~~~~~~~~~---- 144 (312)
T 4ery_A 86 DKTLKIWDVSSGKCLKTLKG---H--SNYVFCCNFNPQS-N--LIVSGSF---------DESVRIWDVKTGKCLKT---- 144 (312)
T ss_dssp TSEEEEEETTTCCEEEEEEC---C--SSCEEEEEECSSS-S--EEEEEET---------TSCEEEEETTTCCEEEE----
T ss_pred CCEEEEEECCCCcEEEEEcC---C--CCCEEEEEEcCCC-C--EEEEEeC---------CCcEEEEECCCCEEEEE----
Confidence 47889999988765432110 1 1112344444432 2 2333332 12688999876542111
Q ss_pred cccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceE-EeCCcEEEEEc
Q 015511 226 LTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEKLVMVGG 302 (405)
Q Consensus 226 ~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~L~~v~~ 302 (405)
..........+.+ +|.+.+.+... ..+..||+.+.+-.. .+..........+. .-+|+.++++.
T Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
T 4ery_A 145 LPAHSDPVSAVHFNRDGSLIVSSSYD--------GLCRIWDTASGQCLK-----TLIDDDNPPVSFVKFSPNGKYILAAT 211 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETT--------SCEEEEETTTCCEEE-----EECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred ecCCCCcEEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceee-----EEeccCCCceEEEEECCCCCEEEEEc
Confidence 0001111112222 45555544322 368899998765211 11111100011122 23566666654
Q ss_pred cccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCcee-EEeeCCCEEEEEeCCCCeEEEEECCCCcE
Q 015511 303 IGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVF-ASSGTDDLIYIQSYGAPSLLVYDMNLKQW 375 (405)
Q Consensus 303 ~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w 375 (405)
.+ ..+.+|++...+-.....-.... ...+. .....++..++....+..+.+||+++++-
T Consensus 212 ~d--------~~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 271 (312)
T 4ery_A 212 LD--------NTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271 (312)
T ss_dssp TT--------TEEEEEETTTTEEEEEECSSCCS------SSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE
T ss_pred CC--------CeEEEEECCCCcEEEEEEecCCc------eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh
Confidence 32 45999998865433221111000 00111 12223444444444677899999998864
No 119
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=63.39 E-value=79 Score=27.88 Aligned_cols=26 Identities=0% Similarity=-0.037 Sum_probs=18.0
Q ss_pred eeCCCEEEEEeCCCCeEEEEECCCCcE
Q 015511 349 SGTDDLIYIQSYGAPSLLVYDMNLKQW 375 (405)
Q Consensus 349 ~~~~~~i~~~~~~~~~~~~Yd~~~~~w 375 (405)
...++.++... .+..+.+||+++++-
T Consensus 254 ~~~~~~l~~~~-~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 254 TSDGLHLLTVG-TDNRMRLWNSSNGEN 279 (408)
T ss_dssp CTTSSEEEEEE-TTSCEEEEETTTCCB
T ss_pred cCCCCEEEEec-CCCeEEEEECCCCcc
Confidence 34566666554 467899999998754
No 120
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=62.59 E-value=69 Score=26.90 Aligned_cols=151 Identities=7% Similarity=0.011 Sum_probs=74.9
Q ss_pred EEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEE
Q 015511 130 FIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIH 209 (405)
Q Consensus 130 ~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~ 209 (405)
+....+|.+++.+.. ...++++|+..+....+..... .....++..++.. .+++.... ...+.
T Consensus 126 i~~~~~g~l~v~~~~-~~~i~~~~~~g~~~~~~~~~~~----~~~p~~i~~~~~g---~l~v~~~~---------~~~i~ 188 (286)
T 1q7f_A 126 VTVDNKGRIIVVECK-VMRVIIFDQNGNVLHKFGCSKH----LEFPNGVVVNDKQ---EIFISDNR---------AHCVK 188 (286)
T ss_dssp EEECTTSCEEEEETT-TTEEEEECTTSCEEEEEECTTT----CSSEEEEEECSSS---EEEEEEGG---------GTEEE
T ss_pred EEEeCCCCEEEEECC-CCEEEEEcCCCCEEEEeCCCCc----cCCcEEEEECCCC---CEEEEECC---------CCEEE
Confidence 334456777776532 4689999986655544432111 0122456666643 35654421 23788
Q ss_pred EEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc
Q 015511 210 IYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC 287 (405)
Q Consensus 210 vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~ 287 (405)
+|+.....-...... ........+.+ +|.+|+..... ...|..||+...... .+........
T Consensus 189 ~~~~~g~~~~~~~~~---g~~~~p~~i~~d~~G~l~v~~~~~-------~~~i~~~~~~g~~~~------~~~~~~~~~~ 252 (286)
T 1q7f_A 189 VFNYEGQYLRQIGGE---GITNYPIGVGINSNGEILIADNHN-------NFNLTIFTQDGQLIS------ALESKVKHAQ 252 (286)
T ss_dssp EEETTCCEEEEESCT---TTSCSEEEEEECTTCCEEEEECSS-------SCEEEEECTTSCEEE------EEEESSCCSC
T ss_pred EEcCCCCEEEEEccC---CccCCCcEEEECCCCCEEEEeCCC-------CEEEEEECCCCCEEE------EEcccCCCCc
Confidence 888743322111110 00011123444 67777765321 127999997654322 1211111111
Q ss_pred -CceE-EeCCcEEEEEccccccccCccceEEEEEEeC
Q 015511 288 -GRLM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG 322 (405)
Q Consensus 288 -~~l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~ 322 (405)
..++ .-+|+|++... ..++.||++..
T Consensus 253 ~~~i~~~~~g~l~vs~~---------~~~v~v~~~~~ 280 (286)
T 1q7f_A 253 CFDVALMDDGSVVLASK---------DYRLYIYRYVQ 280 (286)
T ss_dssp EEEEEEETTTEEEEEET---------TTEEEEEECSC
T ss_pred ceeEEECCCCcEEEECC---------CCeEEEEEccc
Confidence 1233 34688887752 14589997653
No 121
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=62.49 E-value=1.3e+02 Score=30.05 Aligned_cols=186 Identities=11% Similarity=0.106 Sum_probs=92.6
Q ss_pred ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccccc
Q 015511 147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVL 226 (405)
Q Consensus 147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~ 226 (405)
..++++|+.|+++..++.... . ......+..|... .+.+ +.. ..+..|+..++.|........
T Consensus 427 ~Gl~~~~~~~~~~~~~~~~~~-~--~~~v~~i~~d~~g---~lwi-gt~----------~Gl~~~~~~~~~~~~~~~~~~ 489 (781)
T 3v9f_A 427 GNISYYNTRLKKFQIIELEKN-E--LLDVRVFYEDKNK---KIWI-GTH----------AGVFVIDLASKKVIHHYDTSN 489 (781)
T ss_dssp EEEEEECSSSCEEEECCSTTT-C--CCCEEEEEECTTS---EEEE-EET----------TEEEEEESSSSSCCEEECTTT
T ss_pred CCEEEEcCCCCcEEEeccCCC-C--CCeEEEEEECCCC---CEEE-EEC----------CceEEEeCCCCeEEecccCcc
Confidence 568889999988887753210 1 1112234344322 3443 221 267889988888865431110
Q ss_pred ccc-cCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEE-eCCcEEEEEc
Q 015511 227 TGW-RAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMN-LKEKLVMVGG 302 (405)
Q Consensus 227 ~~~-~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~-~~G~L~~v~~ 302 (405)
... ......+.. +|.+ |++... ..|..||+.+.++..... .-.+|... -..+.. .+|.|.+.+.
T Consensus 490 ~~~~~~~i~~i~~d~~g~l-Wigt~~--------~Gl~~~~~~~~~~~~~~~--~~~l~~~~-i~~i~~d~~g~lWi~T~ 557 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGRF-WIGTFG--------GGVGIYTPDMQLVRKFNQ--YEGFCSNT-INQIYRSSKGQMWLATG 557 (781)
T ss_dssp SSCSCSCEEEEEECTTCCE-EEEESS--------SCEEEECTTCCEEEEECT--TTTCSCSC-EEEEEECTTSCEEEEET
T ss_pred cccccceeEEEEEcCCCCE-EEEEcC--------CCEEEEeCCCCeEEEccC--CCCCCCCe-eEEEEECCCCCEEEEEC
Confidence 000 111122333 4555 444321 258999999888753210 00111111 112333 4678877654
Q ss_pred cccccccCccceE-EEEEEeCceeEEEeccChhHHhccCCCCceeEEe-eCCCEEEEEeCCCCeEEEEECCCCcEEEcc
Q 015511 303 IGKQDRPDIIKGI-GIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASS-GTDDLIYIQSYGAPSLLVYDMNLKQWRWSH 379 (405)
Q Consensus 303 ~~~~~~~~~~~~~-~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~ 379 (405)
. .+ ..|+.+..+++.... . .++.. ..+.++. ..++.|++.. ...+..||+++++++...
T Consensus 558 ~----------Glv~~~d~~~~~~~~~~~-~----~gl~~-~~i~~i~~d~~g~lW~~t--~~Gl~~~~~~~~~~~~~~ 618 (781)
T 3v9f_A 558 E----------GLVCFPSARNFDYQVFQR-K----EGLPN-THIRAISEDKNGNIWAST--NTGISCYITSKKCFYTYD 618 (781)
T ss_dssp T----------EEEEESCTTTCCCEEECG-G----GTCSC-CCCCEEEECSSSCEEEEC--SSCEEEEETTTTEEEEEC
T ss_pred C----------CceEEECCCCCcEEEccc-c----CCCCC-ceEEEEEECCCCCEEEEc--CCceEEEECCCCceEEec
Confidence 1 13 444444455554432 1 11111 1233443 3356677764 357999999999888764
No 122
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=62.06 E-value=1.3e+02 Score=29.74 Aligned_cols=117 Identities=9% Similarity=0.022 Sum_probs=58.6
Q ss_pred cCceEEEEeCCCCceEEEEeCcccc--eeeccCCCCCC----CCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceE
Q 015511 134 SYGLVCFMDNDSRSELYVCNPISKS--WKKLEEPPGLK----FSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELS 207 (405)
Q Consensus 134 ~~Gll~~~~~~~~~~~~v~NP~T~~--~~~lP~~~~~~----~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~ 207 (405)
.+|.|++... ...++.+|+.|++ |..-+..+... .......+..++.. +|++... .-.
T Consensus 76 ~~g~vyv~~~--~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~----~v~v~~~----------dg~ 139 (677)
T 1kb0_A 76 VDGIMYVSAS--WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKG----KVYVGAW----------DGR 139 (677)
T ss_dssp ETTEEEEECG--GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETT----EEEEECT----------TSE
T ss_pred ECCEEEEECC--CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECC----EEEEEcC----------CCE
Confidence 4777777643 3678888888875 44432211000 00000011222221 4555321 125
Q ss_pred EEEEeCCCC--Ccccccc-cccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc
Q 015511 208 IHIYDSDTM--MWVTSWK-EVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS 269 (405)
Q Consensus 208 ~~vy~s~~~--~W~~~~~-~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~ 269 (405)
+..+|..++ .|+.... ...........+++.+|.+|+-..... ......|.+||..+.+
T Consensus 140 l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~---~~~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 140 LIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE---YGVRGYITAYDAETGE 201 (677)
T ss_dssp EEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT---TCCBCEEEEEETTTCC
T ss_pred EEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccc---cCCCCEEEEEECCCCc
Confidence 677776544 4866322 111111223457788999988653210 0123589999998765
No 123
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=61.67 E-value=87 Score=27.76 Aligned_cols=144 Identities=9% Similarity=-0.006 Sum_probs=67.0
Q ss_pred ecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015511 133 SSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD 212 (405)
Q Consensus 133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~ 212 (405)
+.++.++.... ...+.+||..+++....-.. . ......+.+.+... .++.++. .-.+.+|+
T Consensus 215 ~~~~~~~~~~~--~g~i~~~d~~~~~~~~~~~~---~--~~~i~~~~~~~~~~---~l~~~~~---------d~~i~i~d 275 (425)
T 1r5m_A 215 VDDDKFVIPGP--KGAIFVYQITEKTPTGKLIG---H--HGPISVLEFNDTNK---LLLSASD---------DGTLRIWH 275 (425)
T ss_dssp EETTEEEEECG--GGCEEEEETTCSSCSEEECC---C--SSCEEEEEEETTTT---EEEEEET---------TSCEEEEC
T ss_pred cCCCEEEEEcC--CCeEEEEEcCCCceeeeecc---C--CCceEEEEECCCCC---EEEEEcC---------CCEEEEEE
Confidence 34566555433 47889999988754432111 1 11223445555432 2333321 12678888
Q ss_pred CCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCce
Q 015511 213 SDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRL 290 (405)
Q Consensus 213 s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l 290 (405)
..++.-...- .........+.. +| .++.+.. ...+..||+.+.+-.. ....... ....+
T Consensus 276 ~~~~~~~~~~----~~~~~~i~~~~~~~~~-~l~~~~~--------d~~i~i~d~~~~~~~~-----~~~~~~~-~i~~~ 336 (425)
T 1r5m_A 276 GGNGNSQNCF----YGHSQSIVSASWVGDD-KVISCSM--------DGSVRLWSLKQNTLLA-----LSIVDGV-PIFAG 336 (425)
T ss_dssp SSSBSCSEEE----CCCSSCEEEEEEETTT-EEEEEET--------TSEEEEEETTTTEEEE-----EEECTTC-CEEEE
T ss_pred CCCCccceEe----cCCCccEEEEEECCCC-EEEEEeC--------CCcEEEEECCCCcEeE-----ecccCCc-cEEEE
Confidence 7664332211 001111112222 55 3333322 2479999998765221 1111110 11112
Q ss_pred E-EeCCcEEEEEccccccccCccceEEEEEEeC
Q 015511 291 M-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG 322 (405)
Q Consensus 291 ~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~ 322 (405)
. .-+|++++++..+ ..+.+|++..
T Consensus 337 ~~s~~~~~l~~~~~d--------g~i~i~~~~~ 361 (425)
T 1r5m_A 337 RISQDGQKYAVAFMD--------GQVNVYDLKK 361 (425)
T ss_dssp EECTTSSEEEEEETT--------SCEEEEECHH
T ss_pred EEcCCCCEEEEEECC--------CeEEEEECCC
Confidence 2 2256766666532 3599999885
No 124
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=61.64 E-value=87 Score=27.76 Aligned_cols=197 Identities=12% Similarity=0.040 Sum_probs=89.9
Q ss_pred EecCceE-EEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEE
Q 015511 132 ASSYGLV-CFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHI 210 (405)
Q Consensus 132 ~s~~Gll-~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~v 210 (405)
-|-+|-+ .+........+.|||+.+++........ .. ...+.+.|.+ ++++.++. ..+.+
T Consensus 141 fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~----~~--V~~v~fspdg---~~l~s~s~----------~~~~~ 201 (365)
T 4h5i_A 141 ISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR----GE--VKDLHFSTDG---KVVAYITG----------SSLEV 201 (365)
T ss_dssp ECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS----SC--CCEEEECTTS---SEEEEECS----------SCEEE
T ss_pred EcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC----Cc--eEEEEEccCC---ceEEeccc----------eeEEE
Confidence 3445543 3444444578999999998876653221 11 2234454543 23333321 14566
Q ss_pred EeCCCCCcccccccccccccCCCccEE--ECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccC
Q 015511 211 YDSDTMMWVTSWKEVLTGWRAGDESII--CDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCG 288 (405)
Q Consensus 211 y~s~~~~W~~~~~~~~~~~~~~~~~v~--~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~ 288 (405)
++..++.-..... ..........+. -+|.....+...+ .....+..+|......... ............
T Consensus 202 ~~~~~~~~~~~~~--~~~~~~~v~~v~fspdg~~l~~~s~d~----~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~V 272 (365)
T 4h5i_A 202 ISTVTGSCIARKT--DFDKNWSLSKINFIADDTVLIAASLKK----GKGIVLTKISIKSGNTSVL---RSKQVTNRFKGI 272 (365)
T ss_dssp EETTTCCEEEEEC--CCCTTEEEEEEEEEETTEEEEEEEESS----SCCEEEEEEEEETTEEEEE---EEEEEESSCSCE
T ss_pred EEeccCcceeeee--cCCCCCCEEEEEEcCCCCEEEEEecCC----cceeEEeecccccceecce---eeeeecCCCCCe
Confidence 6655544322110 000000011222 2666666554321 1123566677665543211 001111111111
Q ss_pred -ceE-EeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeE--EeeCCCEEEEEeCCCCe
Q 015511 289 -RLM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFA--SSGTDDLIYIQSYGAPS 364 (405)
Q Consensus 289 -~l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~ 364 (405)
.+. .-+|++++.+..+ ..+.||++++.+ .+..+.. +-...+.+ +..+|..|.-. ..+..
T Consensus 273 ~~~~~Spdg~~lasgs~D--------~~V~iwd~~~~~--~~~~~~~------gH~~~V~~v~fSpdg~~laS~-S~D~t 335 (365)
T 4h5i_A 273 TSMDVDMKGELAVLASND--------NSIALVKLKDLS--MSKIFKQ------AHSFAITEVTISPDSTYVASV-SAANT 335 (365)
T ss_dssp EEEEECTTSCEEEEEETT--------SCEEEEETTTTE--EEEEETT------SSSSCEEEEEECTTSCEEEEE-ETTSE
T ss_pred EeEEECCCCCceEEEcCC--------CEEEEEECCCCc--EEEEecC------cccCCEEEEEECCCCCEEEEE-eCCCe
Confidence 122 2367877776532 459999887654 2222211 00112333 34456555444 35789
Q ss_pred EEEEECCCC
Q 015511 365 LLVYDMNLK 373 (405)
Q Consensus 365 ~~~Yd~~~~ 373 (405)
+.+||+..+
T Consensus 336 vrvw~ip~~ 344 (365)
T 4h5i_A 336 IHIIKLPLN 344 (365)
T ss_dssp EEEEECCTT
T ss_pred EEEEEcCCC
Confidence 999998644
No 125
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=60.93 E-value=84 Score=27.33 Aligned_cols=190 Identities=11% Similarity=0.133 Sum_probs=96.1
Q ss_pred cCceEEEEeCCCCceEEEEeCcc----cceee-ccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEE
Q 015511 134 SYGLVCFMDNDSRSELYVCNPIS----KSWKK-LEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSI 208 (405)
Q Consensus 134 ~~Gll~~~~~~~~~~~~v~NP~T----~~~~~-lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~ 208 (405)
.+|.|+..+.. ...++++++.+ ..... ++.. . . ...++++|...+ .||+.... ...+
T Consensus 40 ~~~~ly~~D~~-~~~I~~~~~~g~~~~~~~~~~~~~~-~-~----~p~glavd~~~~--~ly~~d~~---------~~~I 101 (316)
T 1ijq_A 40 ASNRIYWSDLS-QRMICSTQLDRAHGVSSYDTVISRD-I-Q----APDGLAVDWIHS--NIYWTDSV---------LGTV 101 (316)
T ss_dssp TTTEEEEEETT-TTEEEEEEC--------CEEEECSS-C-S----CCCEEEEETTTT--EEEEEETT---------TTEE
T ss_pred CCCEEEEEECC-CCcEEEEECCCCCCCcccEEEEeCC-C-C----CcCEEEEeecCC--eEEEEECC---------CCEE
Confidence 46788887653 47888888876 22222 2211 0 1 113566664322 45655321 2367
Q ss_pred EEEeCCCCCcccccccccccccCCCccEEE---CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcc
Q 015511 209 HIYDSDTMMWVTSWKEVLTGWRAGDESIIC---DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCAL 285 (405)
Q Consensus 209 ~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~---~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~ 285 (405)
.+++.....=+..... ... ....+.+ +|.+||.... ....|..+|+....-.. ++.. ..
T Consensus 102 ~~~~~~g~~~~~~~~~---~~~-~P~~iavdp~~g~ly~~d~~-------~~~~I~~~~~dG~~~~~-----~~~~--~~ 163 (316)
T 1ijq_A 102 SVADTKGVKRKTLFRE---NGS-KPRAIVVDPVHGFMYWTDWG-------TPAKIKKGGLNGVDIYS-----LVTE--NI 163 (316)
T ss_dssp EEEETTSSSEEEEEEC---TTC-CEEEEEEETTTTEEEEEECS-------SSCEEEEEETTSCCEEE-----EECS--SC
T ss_pred EEEeCCCCceEEEEEC---CCC-CcceEEeCCCCCEEEEEccC-------CCCeEEEEcCCCCCeEE-----EEEC--CC
Confidence 7787653221111000 111 1123333 7899998631 12479999986543111 1111 11
Q ss_pred cc-CceEEe--CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCC
Q 015511 286 TC-GRLMNL--KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGA 362 (405)
Q Consensus 286 ~~-~~l~~~--~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 362 (405)
.. ..|+.. +++||++... ...+.++.++...=..+...+... ..+.++...++.+|+.....
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~--------~~~I~~~d~dg~~~~~~~~~~~~~-------~~P~giav~~~~ly~~d~~~ 228 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSK--------LHSISSIDVNGGNRKTILEDEKRL-------AHPFSLAVFEDKVFWTDIIN 228 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETT--------TTEEEEEETTSCSCEEEEECTTTT-------SSEEEEEEETTEEEEEETTT
T ss_pred CCceEEEEeccCCEEEEEECC--------CCeEEEEecCCCceEEEeecCCcc-------CCcEEEEEECCEEEEEECCC
Confidence 11 134443 6799988753 245777777643222222221111 12345444578899987767
Q ss_pred CeEEEEECCCCc
Q 015511 363 PSLLVYDMNLKQ 374 (405)
Q Consensus 363 ~~~~~Yd~~~~~ 374 (405)
..+..+|..+++
T Consensus 229 ~~V~~~~~~~g~ 240 (316)
T 1ijq_A 229 EAIFSANRLTGS 240 (316)
T ss_dssp TEEEEEETTTCC
T ss_pred CeEEEEeCCCCc
Confidence 899999987654
No 126
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=59.67 E-value=1e+02 Score=27.83 Aligned_cols=189 Identities=15% Similarity=0.110 Sum_probs=98.5
Q ss_pred ecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015511 133 SSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD 212 (405)
Q Consensus 133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~ 212 (405)
..+|.|+..+.. ...++.+++.++....+..... . ...++.+|+..+ .||+.... ...+.+++
T Consensus 125 ~~~~~ly~~D~~-~~~I~r~~~~g~~~~~~~~~~~-~----~p~glavd~~~g--~lY~~d~~---------~~~I~~~~ 187 (386)
T 3v65_B 125 HRRELVFWSDVT-LDRILRANLNGSNVEEVVSTGL-E----SPGGLAVDWVHD--KLYWTDSG---------TSRIEVAN 187 (386)
T ss_dssp TTTTEEEEEETT-TTEEEEEETTSCCEEEEECSSC-S----CCCCEEEETTTT--EEEEEETT---------TTEEEECB
T ss_pred cCCCeEEEEeCC-CCcEEEEecCCCCcEEEEeCCC-C----CccEEEEEeCCC--eEEEEcCC---------CCeEEEEe
Confidence 357888887753 4788999998876555432111 0 113566665332 45655321 12667776
Q ss_pred CCCCCcccccccccccccCCCccEEE---CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc-C
Q 015511 213 SDTMMWVTSWKEVLTGWRAGDESIIC---DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC-G 288 (405)
Q Consensus 213 s~~~~W~~~~~~~~~~~~~~~~~v~~---~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~ 288 (405)
.....-+.... ... .....+.+ +|.|||.... ....|..+|+....-.. ++. ..... .
T Consensus 188 ~dg~~~~~l~~---~~l-~~P~giavdp~~g~ly~td~~-------~~~~I~r~~~dG~~~~~-----~~~--~~~~~Pn 249 (386)
T 3v65_B 188 LDGAHRKVLLW---QSL-EKPRAIALHPMEGTIYWTDWG-------NTPRIEASSMDGSGRRI-----IAD--THLFWPN 249 (386)
T ss_dssp TTSCSCEEEEC---SSC-SCEEEEEEETTTTEEEEEECS-------SSCEEEEEETTSCSCEE-----EEC--SSCSCEE
T ss_pred CCCCceEEeec---CCC-CCCcEEEEEcCCCeEEEeccC-------CCCEEEEEeCCCCCcEE-----EEE--CCCCCee
Confidence 64332111110 001 11123333 6899998632 12589999987543211 111 11111 1
Q ss_pred ceEE--eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEE
Q 015511 289 RLMN--LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLL 366 (405)
Q Consensus 289 ~l~~--~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 366 (405)
.|+. .+|+||++... ...+.++.++...=..+..-. + ..+.++...++.||+.......+.
T Consensus 250 Glavd~~~~~lY~aD~~--------~~~I~~~d~dG~~~~~~~~~~------~---~~P~giav~~~~ly~td~~~~~V~ 312 (386)
T 3v65_B 250 GLTIDYAGRRMYWVDAK--------HHVIERANLDGSHRKAVISQG------L---PHPFAITVFEDSLYWTDWHTKSIN 312 (386)
T ss_dssp EEEEEGGGTEEEEEETT--------TTEEEEECTTSCSCEEEECSS------C---SSEEEEEEETTEEEEEETTTTEEE
T ss_pred eEEEeCCCCEEEEEECC--------CCEEEEEeCCCCeeEEEEECC------C---CCceEEEEECCEEEEeeCCCCeEE
Confidence 3444 37899998753 244666666542212221111 0 123454446778998876778899
Q ss_pred EEECCCC
Q 015511 367 VYDMNLK 373 (405)
Q Consensus 367 ~Yd~~~~ 373 (405)
.+|..++
T Consensus 313 ~~~~~~G 319 (386)
T 3v65_B 313 SANKFTG 319 (386)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 9995444
No 127
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=59.65 E-value=90 Score=27.29 Aligned_cols=108 Identities=9% Similarity=0.093 Sum_probs=59.3
Q ss_pred cEEEEEECCCCcchhhhcccccccCCcccc-CceE-EeCCcEEEEEccccccccCccceEEEEEEe--CceeEEEeccCh
Q 015511 258 HGLISFNLSSRSSHALLIKSFIPVPCALTC-GRLM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLN--GKEWQEVARMPH 333 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~--~~~W~~v~~i~~ 333 (405)
..+..||+.+.+...+. .....+..... ..+. .-+|+.+++.... ....+.||+++ .++++.+..++.
T Consensus 233 ~~v~v~~~~~g~~~~~~--~~~~~~~~~~~~~~i~~spdg~~l~v~~~~------~~~~i~v~~~~~~~g~~~~~~~~~~ 304 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQ--TVAADTVNAQGSGDIHLSPDGKYLYASNRL------KADGVAIFKVDETNGTLTKVGYQLT 304 (361)
T ss_dssp CEEEEEEEETTEEEEEE--EEESCSSCCCCEEEEEECTTSSEEEEEECS------SSCEEEEEEECTTTCCEEEEEEEEC
T ss_pred CeEEEEEecCCceEEeE--EEecCCCCCCCcccEEECCCCCEEEEECCC------CCCEEEEEEEcCCCCcEEEeeEecC
Confidence 47888888766543211 01111211111 1233 2367644443321 02469999997 456766655542
Q ss_pred hHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEE--EECCCCcEEEcc
Q 015511 334 KFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLV--YDMNLKQWRWSH 379 (405)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--Yd~~~~~w~~l~ 379 (405)
+....-+++...|+.+|+.......+.+ +|+++++.+.+.
T Consensus 305 ------g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 305 ------GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp ------SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred ------CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence 1111234556778889888755566767 577788888775
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=59.62 E-value=1e+02 Score=27.94 Aligned_cols=188 Identities=11% Similarity=-0.017 Sum_probs=89.3
Q ss_pred ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccccc
Q 015511 147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVL 226 (405)
Q Consensus 147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~ 226 (405)
..++++|..++..+.+.... .....+...|.. ++ |+..... .. ...+.+||..+++-.....
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~------~~v~~~~~Spdg-~~-la~~s~~---~~----~~~i~~~d~~tg~~~~l~~--- 220 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP------QPLMSPAWSPDG-SK-LAYVTFE---SG----RSALVIQTLANGAVRQVAS--- 220 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES------SCEEEEEECTTS-SE-EEEEECT---TS----SCEEEEEETTTCCEEEEEC---
T ss_pred ceEEEEcCCCCCCEEEeCCC------CcceeeEEcCCC-CE-EEEEEec---CC----CcEEEEEECCCCcEEEeec---
Confidence 68999998876655553211 112344455543 23 3333221 10 2478999998876543221
Q ss_pred ccccCCCccEEE--CcE-EEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceE-EeCCcEEEEEc
Q 015511 227 TGWRAGDESIIC--DGV-LYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEKLVMVGG 302 (405)
Q Consensus 227 ~~~~~~~~~v~~--~g~-iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~L~~v~~ 302 (405)
.......+.. +|. +++.+... ....|..+|+.+.+... ....+. ....+. .-+|+.+++..
T Consensus 221 --~~~~~~~~~~spdg~~la~~~~~~------g~~~i~~~d~~~~~~~~-----l~~~~~--~~~~~~~spdg~~l~~~s 285 (415)
T 2hqs_A 221 --FPRHNGAPAFSPDGSKLAFALSKT------GSLNLYVMDLASGQIRQ-----VTDGRS--NNTEPTWFPDSQNLAFTS 285 (415)
T ss_dssp --CSSCEEEEEECTTSSEEEEEECTT------SSCEEEEEETTTCCEEE-----CCCCSS--CEEEEEECTTSSEEEEEE
T ss_pred --CCCcccCEEEcCCCCEEEEEEecC------CCceEEEEECCCCCEEe-----CcCCCC--cccceEECCCCCEEEEEE
Confidence 1111112222 554 44443211 12469999998776321 111111 111122 23566444443
Q ss_pred cccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC--CCeEEEEECCCCcEEEccC
Q 015511 303 IGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG--APSLLVYDMNLKQWRWSHK 380 (405)
Q Consensus 303 ~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~Yd~~~~~w~~l~~ 380 (405)
... ....+.+|+++..+-..+..-.. ....+.+...|+.|++.... ...+.++|+++++.+.+..
T Consensus 286 ~~~-----g~~~i~~~d~~~~~~~~l~~~~~--------~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~ 352 (415)
T 2hqs_A 286 DQA-----GRPQVYKVNINGGAPQRITWEGS--------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS 352 (415)
T ss_dssp CTT-----SSCEEEEEETTSSCCEECCCSSS--------EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC
T ss_pred CCC-----CCcEEEEEECCCCCEEEEecCCC--------cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecC
Confidence 210 11234444444444222211000 00113345677777776532 3589999999998877653
No 129
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=59.41 E-value=68 Score=31.19 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=61.2
Q ss_pred CccEEECcEEEeeEEecCCCCCCCccEEEEEEC-CCCc--chhhhcccccccCC--------ccccCceEE--eCCc---
Q 015511 233 DESIICDGVLYFLIYATGGGAPENRHGLISFNL-SSRS--SHALLIKSFIPVPC--------ALTCGRLMN--LKEK--- 296 (405)
Q Consensus 233 ~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~-~~~~--w~~~~~~~~~~~p~--------~~~~~~l~~--~~G~--- 296 (405)
..+++.+|.+|+.... ...+.++|. .+.+ |+. . ...+. ......++. .+|+
T Consensus 56 ~tP~v~~g~vyv~~~~--------~~~v~AlD~~~tG~~lW~~----~-~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~ 122 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF--------PNNTFALGLDDPGTILWQD----K-PKQNPAARAVACCDLVNRGLAYWPGDGKTPA 122 (599)
T ss_dssp SCCEEETTEEEEECST--------TTCEEEEETTCTTSEEEEE----C-CCCCGGGGGGCSSCSCCCCCEEECCCSSSCC
T ss_pred eccEEECCEEEEEeCC--------CCEEEEEeCCCCCcEEEEE----C-CCCCccccccccccccccceEEEecCCccee
Confidence 3578889999998631 237999999 6654 652 1 11111 011234555 5777
Q ss_pred -EEEEEccccccccCccceEEEEEEe--C--ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC-----CCCeEE
Q 015511 297 -LVMVGGIGKQDRPDIIKGIGIWVLN--G--KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY-----GAPSLL 366 (405)
Q Consensus 297 -L~~v~~~~~~~~~~~~~~~~vw~l~--~--~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~ 366 (405)
||+.+.. . .++.|+ + ..|+.-..-.. ......... .+ .++.||+... ....+.
T Consensus 123 rV~v~t~d---------g--~l~AlDa~TG~~~W~~~~~~~~---~~~~~~ssP-~v--~~g~V~vg~~g~e~g~~g~v~ 185 (599)
T 1w6s_A 123 LILKTQLD---------G--NVAALNAETGETVWKVENSDIK---VGSTLTIAP-YV--VKDKVIIGSSGAELGVRGYLT 185 (599)
T ss_dssp EEEEECTT---------S--EEEEEETTTCCEEEEEECCCGG---GTCBCCSCC-EE--ETTEEEECCBCGGGTCCCEEE
T ss_pred EEEEEcCC---------C--EEEEEECCCCCEEEeecCCCCC---ccceeecCC-EE--ECCEEEEEecccccCCCCeEE
Confidence 8776431 1 344454 3 35875321110 001000111 11 3567887543 256899
Q ss_pred EEECCCCc--EEE
Q 015511 367 VYDMNLKQ--WRW 377 (405)
Q Consensus 367 ~Yd~~~~~--w~~ 377 (405)
.||.++++ |+.
T Consensus 186 A~D~~TG~~~W~~ 198 (599)
T 1w6s_A 186 AYDVKTGEQVWRA 198 (599)
T ss_dssp EEETTTCCEEEEE
T ss_pred EEECCCCcEEEEE
Confidence 99999886 544
No 130
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=59.33 E-value=84 Score=26.81 Aligned_cols=219 Identities=8% Similarity=-0.051 Sum_probs=99.0
Q ss_pred CCCeeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEe
Q 015511 102 DEPIGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVD 181 (405)
Q Consensus 102 ~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~ 181 (405)
.....+.||+..+....+..+..+ ..+.-+.+|-+++.. ...++++|+.+++...+...+... .....-.+.+|
T Consensus 33 ~~~~i~~~d~~~~~~~~~~~~~~~--~~i~~~~dG~l~v~~---~~~l~~~d~~~g~~~~~~~~~~~~-~~~~~~di~~d 106 (297)
T 3g4e_A 33 PAKKVCRWDSFTKQVQRVTMDAPV--SSVALRQSGGYVATI---GTKFCALNWKEQSAVVLATVDNDK-KNNRFNDGKVD 106 (297)
T ss_dssp TTTEEEEEETTTCCEEEEECSSCE--EEEEEBTTSSEEEEE---TTEEEEEETTTTEEEEEEECCTTC-SSEEEEEEEEC
T ss_pred CCCEEEEEECCCCcEEEEeCCCce--EEEEECCCCCEEEEE---CCeEEEEECCCCcEEEEEecCCCC-CCCCCCCEEEC
Confidence 334566778776654444333211 112334455555544 368999999999887765432111 11112345566
Q ss_pred CCCCcEEEEEEeeeccCC--CccccceEEEEEeCCCCCcccccccccccccCCCccEEE--Cc-EEEeeEEecCCCCCCC
Q 015511 182 RVSHRYTVSIVKSKQVTG--NFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DG-VLYFLIYATGGGAPEN 256 (405)
Q Consensus 182 ~~~~~ykv~~~~~~~~~~--~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g-~iy~l~~~~~~~~~~~ 256 (405)
+..+ +++........ ......-.++.++.. +.-..... .. .....+.+ +| .+|+.....
T Consensus 107 ~dG~---l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~----~~-~~pngi~~spdg~~lyv~~~~~------- 170 (297)
T 3g4e_A 107 PAGR---YFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFD----QV-DISNGLDWSLDHKIFYYIDSLS------- 170 (297)
T ss_dssp TTSC---EEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEE----EE-SBEEEEEECTTSCEEEEEEGGG-------
T ss_pred CCCC---EEEecCCcccccccccCCCcEEEEEECC-CCEEEEee----cc-ccccceEEcCCCCEEEEecCCC-------
Confidence 6543 33322110000 000011245556543 32222111 11 11123444 45 588876432
Q ss_pred ccEEEEEEC--CCCcchhhhcccccccCCccc-cCceE-EeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccC
Q 015511 257 RHGLISFNL--SSRSSHALLIKSFIPVPCALT-CGRLM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMP 332 (405)
Q Consensus 257 ~~~i~~fD~--~~~~w~~~~~~~~~~~p~~~~-~~~l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~ 332 (405)
..|..||+ .+...... ......+.... ...+. ..+|.|++.... ...+.+|..+.++-...-.+|
T Consensus 171 -~~i~~~~~d~~~G~~~~~--~~~~~~~~~~~~p~g~~~d~~G~lwva~~~--------~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 171 -YSVDAFDYDLQTGQISNR--RSVYKLEKEEQIPDGMCIDAEGKLWVACYN--------GGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp -TEEEEEEECTTTCCEEEE--EEEEECCGGGCEEEEEEEBTTSCEEEEEET--------TTEEEEECTTTCCEEEEEECS
T ss_pred -CcEEEEeccCCCCcccCc--EEEEECCCCCCCCCeeEECCCCCEEEEEcC--------CCEEEEEcCCCceEEEEEECC
Confidence 47888876 44432210 00112221111 11233 356899887642 134666666655554444444
Q ss_pred hhHHhccCCCCceeEEe-eCCCEEEEEeC
Q 015511 333 HKFFQGFGEFDDVFASS-GTDDLIYIQSY 360 (405)
Q Consensus 333 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~ 360 (405)
.... ..+++. ..++.+|+...
T Consensus 240 ~~~~-------t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 240 VDKT-------TSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp SSBE-------EEEEEESGGGCEEEEEEB
T ss_pred CCCc-------eEEEEeCCCCCEEEEEcC
Confidence 2110 122333 35678999764
No 131
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=58.37 E-value=91 Score=26.93 Aligned_cols=22 Identities=14% Similarity=0.404 Sum_probs=16.0
Q ss_pred CCEEEEEeCCCCeEEEEECCCCc
Q 015511 352 DDLIYIQSYGAPSLLVYDMNLKQ 374 (405)
Q Consensus 352 ~~~i~~~~~~~~~~~~Yd~~~~~ 374 (405)
++.++.. ..+..+.+||+++++
T Consensus 299 ~~~l~~~-~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 299 QKMLALG-NQVGKLYVWDLEVED 320 (366)
T ss_dssp SSEEEEE-CTTSCEEEEECCSSS
T ss_pred CcEEEEE-ecCCcEEEEECCCCC
Confidence 5555554 456789999999874
No 132
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=57.99 E-value=1e+02 Score=27.44 Aligned_cols=67 Identities=7% Similarity=0.071 Sum_probs=35.3
Q ss_pred ecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015511 133 SSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD 212 (405)
Q Consensus 133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~ 212 (405)
+.+|-.++.+. ..+.+.+||..+++....-.. + ......+.+.+.. . .++.++. ...+.+|+
T Consensus 106 ~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~---h--~~~v~~~~~~~~~-~--~l~s~s~---------d~~i~iwd 167 (420)
T 3vl1_A 106 KLQMRRFILGT-TEGDIKVLDSNFNLQREIDQA---H--VSEITKLKFFPSG-E--ALISSSQ---------DMQLKIWS 167 (420)
T ss_dssp CSSSCEEEEEE-TTSCEEEECTTSCEEEEETTS---S--SSCEEEEEECTTS-S--EEEEEET---------TSEEEEEE
T ss_pred ecCCCEEEEEE-CCCCEEEEeCCCcceeeeccc---c--cCccEEEEECCCC-C--EEEEEeC---------CCeEEEEe
Confidence 33454444332 247899999988877654211 1 1122445555543 2 2333332 13789999
Q ss_pred CCCCC
Q 015511 213 SDTMM 217 (405)
Q Consensus 213 s~~~~ 217 (405)
..++.
T Consensus 168 ~~~~~ 172 (420)
T 3vl1_A 168 VKDGS 172 (420)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 87653
No 133
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=57.67 E-value=1.1e+02 Score=27.72 Aligned_cols=190 Identities=10% Similarity=0.117 Sum_probs=96.2
Q ss_pred cCceEEEEeCCCCceEEEEeCcccc----eeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEE
Q 015511 134 SYGLVCFMDNDSRSELYVCNPISKS----WKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIH 209 (405)
Q Consensus 134 ~~Gll~~~~~~~~~~~~v~NP~T~~----~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~ 209 (405)
.+|.|+..+.. ...++.+++.... ...+... ......++++|...+ .||+.... ...+.
T Consensus 122 ~~~~lywsD~~-~~~I~~~~~~g~~~~~~~~~~~~~-----~~~~p~glavD~~~~--~lY~~d~~---------~~~I~ 184 (400)
T 3p5b_L 122 ASNRIYWSDLS-QRMICSTQLDRAHGVSSYDTVISR-----DIQAPDGLAVDWIHS--NIYWTDSV---------LGTVS 184 (400)
T ss_dssp TTTEEEEEETT-TTEEEEEEC------CCCEEEECS-----SCSCEEEEEEETTTT--EEEEEETT---------TTEEE
T ss_pred ccCceEEEecC-CCeEEEEEcccCCCCCcceEEEeC-----CCCCcccEEEEecCC--ceEEEECC---------CCeEE
Confidence 46788887653 3677777776521 2222110 001234677775332 46665421 23677
Q ss_pred EEeCCCCCcccccccccccccCCCccEEE---CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccc
Q 015511 210 IYDSDTMMWVTSWKEVLTGWRAGDESIIC---DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALT 286 (405)
Q Consensus 210 vy~s~~~~W~~~~~~~~~~~~~~~~~v~~---~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~ 286 (405)
+++.....-+..... .. ....++.+ +|.|||.... ....|..+++....-.. .+. ....
T Consensus 185 ~~~~~g~~~~~l~~~---~~-~~P~~iavdp~~g~ly~td~~-------~~~~I~~~~~dG~~~~~-----~~~--~~l~ 246 (400)
T 3p5b_L 185 VADTKGVKRKTLFRE---NG-SKPRAIVVDPVHGFMYWTDWG-------TPAKIKKGGLNGVDIYS-----LVT--ENIQ 246 (400)
T ss_dssp EECTTTCSEEEEEEC---SS-CCEEEEEEETTTTEEEEEECS-------SSCCEEEEETTSCSCEE-----EEC--SSCS
T ss_pred EEeCCCCceEEEEeC---CC-CCcceEEEecccCeEEEEeCC-------CCCEEEEEeCCCCccEE-----EEE--CCCC
Confidence 777754432222110 11 11123444 6899998631 12478999986543111 111 1111
Q ss_pred c-CceEEe--CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCC
Q 015511 287 C-GRLMNL--KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAP 363 (405)
Q Consensus 287 ~-~~l~~~--~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 363 (405)
. ..|+.. +++||++... ...+.++.++...=..+...+..+ ...+++...++.||+......
T Consensus 247 ~P~glavd~~~~~lY~aD~~--------~~~I~~~d~dG~~~~~~~~~~~~l-------~~P~gl~v~~~~lywtd~~~~ 311 (400)
T 3p5b_L 247 WPNGITLDLLSGRLYWVDSK--------LHSISSIDVNGGNRKTILEDEKRL-------AHPFSLAVFEDKVFWTDIINE 311 (400)
T ss_dssp CEEEEEEETTTTEEEEEETT--------TTEEEEEETTSCCCEEEEECSSTT-------SSEEEEEEETTEEEEEESSSC
T ss_pred ceEEEEEEeCCCEEEEEECC--------CCEEEEEeCCCCccEEEEeCCCCC-------CCCEEEEEeCCEEEEecCCCC
Confidence 1 134443 6899998752 245777777653222222211111 134555557788888876667
Q ss_pred eEEEEECCCC
Q 015511 364 SLLVYDMNLK 373 (405)
Q Consensus 364 ~~~~Yd~~~~ 373 (405)
.+..+|..++
T Consensus 312 ~V~~~~~~~G 321 (400)
T 3p5b_L 312 AIFSANRLTG 321 (400)
T ss_dssp SEEEEESSSC
T ss_pred eEEEEEcCCC
Confidence 8899996555
No 134
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=57.50 E-value=88 Score=26.51 Aligned_cols=193 Identities=11% Similarity=0.100 Sum_probs=89.3
Q ss_pred CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccc-ccc
Q 015511 146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTS-WKE 224 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~-~~~ 224 (405)
...++++|+.++++..+.... .........++..++..+ ++++... ...+.+|+.. +..... ...
T Consensus 45 ~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~i~~~~~~g--~l~v~~~----------~~~l~~~d~~-g~~~~~~~~~ 110 (314)
T 1pjx_A 45 AGEILRIDLKTGKKTVICKPE-VNGYGGIPAGCQCDRDAN--QLFVADM----------RLGLLVVQTD-GTFEEIAKKD 110 (314)
T ss_dssp CCEEEEECTTTCCEEEEECCE-ETTEECCEEEEEECSSSS--EEEEEET----------TTEEEEEETT-SCEEECCSBC
T ss_pred CCEEEEEeCCCCcEEEEEecc-cCCCCCCCceEEEecCCC--cEEEEEC----------CCCEEEEeCC-CCEEEEEecc
Confidence 367899999999887654310 000001224555555411 4555432 1267788877 655432 111
Q ss_pred ccccccCCCccEEE--CcEEEeeEEecCC-------CCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEE---
Q 015511 225 VLTGWRAGDESIIC--DGVLYFLIYATGG-------GAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMN--- 292 (405)
Q Consensus 225 ~~~~~~~~~~~v~~--~g~iy~l~~~~~~-------~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~--- 292 (405)
...........+.+ +|.+|+.....+. ........|..||+. .+...+. .....| ..++.
T Consensus 111 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~--~~~~~~-----~~i~~~~~ 182 (314)
T 1pjx_A 111 SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD--TAFQFP-----NGIAVRHM 182 (314)
T ss_dssp TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE--EEESSE-----EEEEEEEC
T ss_pred CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec--cCCCCc-----ceEEEecc
Confidence 00000111233444 6788776532100 001112479999986 4432110 001111 12333
Q ss_pred --eCC-cEEEEEccccccccCccceEEEEEEe-CceeEEE---eccChhHHhccCCCCceeEE-eeCCCEEEEEeCCCCe
Q 015511 293 --LKE-KLVMVGGIGKQDRPDIIKGIGIWVLN-GKEWQEV---ARMPHKFFQGFGEFDDVFAS-SGTDDLIYIQSYGAPS 364 (405)
Q Consensus 293 --~~G-~L~~v~~~~~~~~~~~~~~~~vw~l~-~~~W~~v---~~i~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~ 364 (405)
-+| .||+.... ...+.+|.++ ++..... ..++.... ..+.++ ...++.+|+.......
T Consensus 183 ~d~dg~~l~v~~~~--------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~------~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 183 NDGRPYQLIVAETP--------TKKLWSYDIKGPAKIENKKVWGHIPGTHE------GGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp TTSCEEEEEEEETT--------TTEEEEEEEEETTEEEEEEEEEECCCCSS------CEEEEEEEBTTCCEEEEEETTTE
T ss_pred cCCCCCEEEEEECC--------CCeEEEEECCCCCccccceEEEECCCCCC------CCCCceEECCCCCEEEEEcCCCE
Confidence 345 46666532 2458888876 4444321 22221100 012222 2234567776545568
Q ss_pred EEEEECCCCc
Q 015511 365 LLVYDMNLKQ 374 (405)
Q Consensus 365 ~~~Yd~~~~~ 374 (405)
+.+||+++++
T Consensus 249 i~~~d~~~g~ 258 (314)
T 1pjx_A 249 IEVFGPDGGQ 258 (314)
T ss_dssp EEEECTTCBS
T ss_pred EEEEcCCCCc
Confidence 9999998654
No 135
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=57.42 E-value=84 Score=30.39 Aligned_cols=119 Identities=14% Similarity=0.120 Sum_probs=62.0
Q ss_pred CccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--chhhhcccccccCCc------cccCceEEeCCcEEEEEccc
Q 015511 233 DESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SHALLIKSFIPVPCA------LTCGRLMNLKEKLVMVGGIG 304 (405)
Q Consensus 233 ~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~------~~~~~l~~~~G~L~~v~~~~ 304 (405)
..+++.+|++|+.... ..+.++|.++.+ |+. . ...+.. .....++..+|+||+....
T Consensus 62 ~~P~v~~g~vyv~~~~---------~~v~AlD~~tG~~~W~~----~-~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~d- 126 (582)
T 1flg_A 62 SQAIVSDGVIYVTASY---------SRLFALDAKTGKRLWTY----N-HRLPDDIRPCCDVVNRGAAIYGDKVFFGTLD- 126 (582)
T ss_dssp CCCEEETTEEEEEETT---------TEEEEEESSSCCEEEEE----E-CCCCTTCCCSSCSCCCCCEEETTEEEEEETT-
T ss_pred eccEEECCEEEEEcCC---------CCEEEEECCCCcEEEEE----c-CCCCcccccccccCCCccEEECCEEEEEeCC-
Confidence 3578899999998632 249999997654 652 1 111211 1123456778888876531
Q ss_pred cccccCccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEEee--CCC-EEEEEeC-----CCCeEEEEECCCCc
Q 015511 305 KQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFASSG--TDD-LIYIQSY-----GAPSLLVYDMNLKQ 374 (405)
Q Consensus 305 ~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~~~--~~~-~i~~~~~-----~~~~~~~Yd~~~~~ 374 (405)
..+..++.++ ..|+.-..-+.. .+..........+ .|. .||+... ....++.||.++++
T Consensus 127 --------g~l~AlD~~TG~~~W~~~~~~~~~---~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 127 --------ASVVALNKNTGKVVWKKKFADHGA---GYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp --------TEEEEEESSSCCEEEEEECSCGGG---TCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred --------CEEEEEECCCCCEEeeecCCCCCc---CcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence 2244444433 368764221110 0100111111111 122 6777432 24689999999886
Q ss_pred EEE
Q 015511 375 WRW 377 (405)
Q Consensus 375 w~~ 377 (405)
-.+
T Consensus 196 ~~W 198 (582)
T 1flg_A 196 EIW 198 (582)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
No 136
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=57.35 E-value=50 Score=28.99 Aligned_cols=87 Identities=15% Similarity=0.212 Sum_probs=48.3
Q ss_pred CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeE--EeeCCCEEEEEeCCCCeEEEEECC
Q 015511 294 KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFA--SSGTDDLIYIQSYGAPSLLVYDMN 371 (405)
Q Consensus 294 ~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~Yd~~ 371 (405)
+|++++.++.+ ..+.||+++.++|.....+.. +....+.+ +...++.+.... .+..+.+||.+
T Consensus 27 ~g~~las~~~D--------~~i~iw~~~~~~~~~~~~~~~------~h~~~v~~~~~sp~g~~l~s~s-~D~~v~iw~~~ 91 (345)
T 3fm0_A 27 AGTLLASCGGD--------RRIRIWGTEGDSWICKSVLSE------GHQRTVRKVAWSPCGNYLASAS-FDATTCIWKKN 91 (345)
T ss_dssp TSSCEEEEETT--------SCEEEEEEETTEEEEEEEECS------SCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEEC
T ss_pred CCCEEEEEcCC--------CeEEEEEcCCCcceeeeeecc------ccCCcEEEEEECCCCCEEEEEE-CCCcEEEEEcc
Confidence 46666565532 459999999888865433221 00112333 334566655543 46788899998
Q ss_pred CCcEEEccCCCCCCCCcccceeeeeece
Q 015511 372 LKQWRWSHKCPVTKRFPLQLFTGFCFEP 399 (405)
Q Consensus 372 ~~~w~~l~~~p~~~~~~~~~~~~~~~~p 399 (405)
+++++.+.....+. ....+++|.|
T Consensus 92 ~~~~~~~~~~~~h~----~~v~~v~~sp 115 (345)
T 3fm0_A 92 QDDFECVTTLEGHE----NEVKSVAWAP 115 (345)
T ss_dssp CC-EEEEEEECCCS----SCEEEEEECT
T ss_pred CCCeEEEEEccCCC----CCceEEEEeC
Confidence 88776654433221 1244566655
No 137
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=57.09 E-value=42 Score=30.00 Aligned_cols=72 Identities=17% Similarity=0.122 Sum_probs=42.3
Q ss_pred eEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEccCCCCCCCCccccee
Q 015511 314 GIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFT 393 (405)
Q Consensus 314 ~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~~p~~~~~~~~~~~ 393 (405)
.+.+|+++. .+.+.+++-.- ..-+++...|+.+|..+. ..+.+||+++++.+.+......+..+ .
T Consensus 287 ~v~viD~~t--~~~v~~i~~~~-------p~~ia~spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i~~~G~~P----~ 351 (361)
T 2oiz_A 287 EIWVMDTKT--KQRVARIPGRD-------ALSMTIDQQRNLMLTLDG--GNVNVYDISQPEPKLLRTIEGAAEAS----L 351 (361)
T ss_dssp EEEEEETTT--TEEEEEEECTT-------CCEEEEETTTTEEEEECS--SCEEEEECSSSSCEEEEEETTSCSSE----E
T ss_pred eEEEEECCC--CcEEEEEecCC-------eeEEEECCCCCEEEEeCC--CeEEEEECCCCcceeeEEeccCCCCc----E
Confidence 455665544 34555554211 123456778889998764 79999999998445555532222222 3
Q ss_pred eeeecee
Q 015511 394 GFCFEPR 400 (405)
Q Consensus 394 ~~~~~p~ 400 (405)
++++.|.
T Consensus 352 ~~~~~p~ 358 (361)
T 2oiz_A 352 QVQFHPV 358 (361)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 6666663
No 138
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=56.01 E-value=90 Score=26.14 Aligned_cols=201 Identities=9% Similarity=0.071 Sum_probs=93.9
Q ss_pred ecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015511 133 SSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD 212 (405)
Q Consensus 133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~ 212 (405)
+.+|.+++.+.. ...+.++|+..+....++.............++.+++..+ .+++..... ...+.+|+
T Consensus 38 ~~~g~l~v~~~~-~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g--~l~v~~~~~--------~~~i~~~d 106 (286)
T 1q7f_A 38 NAQNDIIVADTN-NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG--DIIVTERSP--------THQIQIYN 106 (286)
T ss_dssp CTTCCEEEEEGG-GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTT--EEEEEECGG--------GCEEEEEC
T ss_pred CCCCCEEEEECC-CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCC--eEEEEcCCC--------CCEEEEEC
Confidence 445666665432 3678899988655555543211111111223455532211 455543210 13678888
Q ss_pred CCCCCccc-ccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc-C
Q 015511 213 SDTMMWVT-SWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC-G 288 (405)
Q Consensus 213 s~~~~W~~-~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~ 288 (405)
. ++.-.. ... ........+.+ +|.+|+.... ...|..||+...... .+..+..... .
T Consensus 107 ~-~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~--------~~~i~~~~~~g~~~~------~~~~~~~~~~p~ 167 (286)
T 1q7f_A 107 Q-YGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECK--------VMRVIIFDQNGNVLH------KFGCSKHLEFPN 167 (286)
T ss_dssp T-TSCEEEEECT----TTCSCEEEEEECTTSCEEEEETT--------TTEEEEECTTSCEEE------EEECTTTCSSEE
T ss_pred C-CCcEEEEecC----ccCCCceEEEEeCCCCEEEEECC--------CCEEEEEcCCCCEEE------EeCCCCccCCcE
Confidence 4 333211 110 00011123333 6788776521 247999997654422 1111111111 1
Q ss_pred ceEE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEe-eCCCEEEEEeCCCC-eE
Q 015511 289 RLMN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASS-GTDDLIYIQSYGAP-SL 365 (405)
Q Consensus 289 ~l~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~-~~ 365 (405)
.++. .+|+||+.... ...+.+|..+...-..+.. ... + ..+.++. ..++.+|+...... .+
T Consensus 168 ~i~~~~~g~l~v~~~~--------~~~i~~~~~~g~~~~~~~~-~g~----~---~~p~~i~~d~~G~l~v~~~~~~~~i 231 (286)
T 1q7f_A 168 GVVVNDKQEIFISDNR--------AHCVKVFNYEGQYLRQIGG-EGI----T---NYPIGVGINSNGEILIADNHNNFNL 231 (286)
T ss_dssp EEEECSSSEEEEEEGG--------GTEEEEEETTCCEEEEESC-TTT----S---CSEEEEEECTTCCEEEEECSSSCEE
T ss_pred EEEECCCCCEEEEECC--------CCEEEEEcCCCCEEEEEcc-CCc----c---CCCcEEEECCCCCEEEEeCCCCEEE
Confidence 2333 35888887642 2457888765432222211 100 0 1222332 22446777665554 89
Q ss_pred EEEECCCCcEEEcc
Q 015511 366 LVYDMNLKQWRWSH 379 (405)
Q Consensus 366 ~~Yd~~~~~w~~l~ 379 (405)
.+||.+.+....+.
T Consensus 232 ~~~~~~g~~~~~~~ 245 (286)
T 1q7f_A 232 TIFTQDGQLISALE 245 (286)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEECCCCCEEEEEc
Confidence 99998776555553
No 139
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=55.93 E-value=1.7e+02 Score=29.27 Aligned_cols=203 Identities=10% Similarity=0.129 Sum_probs=104.1
Q ss_pred EEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEE
Q 015511 130 FIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIH 209 (405)
Q Consensus 130 ~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~ 209 (405)
+....+|.|.+... ..+..+|+.|+++..++......... ...+..|... .+++... ..+.
T Consensus 93 i~~d~~g~lWigT~---~Gl~~yd~~~~~f~~~~~~~~~~~~~--i~~i~~d~~g---~lwi~t~-----------~gl~ 153 (795)
T 4a2l_A 93 VKTDSQGRVWIGTR---DGLSRYDEEKDIFQNFFYEKNGKHLQ--VNGIEEISPE---QLLISTP-----------EGLI 153 (795)
T ss_dssp EEECTTSCEEEEES---SCEEEEETTTTEEEEECCEETTEECC--CCEEEEEETT---EEEEEET-----------TEEE
T ss_pred EEECCCCCEEEEeC---CchheeCCCCCeEEeccccccCCCce--EEEEEECCCC---CEEEEEC-----------CceE
Confidence 34456788777653 56899999999888775432110000 1123233221 3444221 2577
Q ss_pred EEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc
Q 015511 210 IYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC 287 (405)
Q Consensus 210 vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~ 287 (405)
.|+..++........... ......++. +|.+|+-. .. ..|..||+.+.++... ...+....-
T Consensus 154 ~~~~~~~~~~~~~~~~~~--~~~i~~i~~d~~g~lwigt-~~--------~Gl~~~~~~~~~~~~~-----~~~~~~~~i 217 (795)
T 4a2l_A 154 MFDIKESKFIDDSFSTAM--HKTIASTLYRQGDQIYIGT-ST--------DGLYTYSITQKTFEKV-----IPILGTKQI 217 (795)
T ss_dssp EEETTTTEEECSSSCHHH--HTCCEEEEEEETTEEEEEE-SS--------SCEEEEETTTCCEEEC-----C----CCCE
T ss_pred EEECCCCEEEeccCCCCC--CcceEEEEECCCCCEEEEE-CC--------CCEEEEeCCCCeEEEe-----cCCCCCCee
Confidence 888877776554321110 000123333 67766633 21 2599999998886531 111111111
Q ss_pred CceE-EeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEe-eCCCEEEEEeCCCCeE
Q 015511 288 GRLM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASS-GTDDLIYIQSYGAPSL 365 (405)
Q Consensus 288 ~~l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~ 365 (405)
..+. ..+|.|++.+.. ..+.+|..+..+++....-+... ..+. ...+.++. ...+.|++... ..+
T Consensus 218 ~~i~~d~~g~lwigt~~---------~Gl~~~~~~~~~~~~~~~~~~~~-~~l~-~~~i~~i~~d~~g~lWigt~--~Gl 284 (795)
T 4a2l_A 218 QAILQQSPTRIWVATEG---------AGLFLINPKTKEIKNYLHSPSNP-KSIS-SNYIRSLAMDSQNRLWIGTF--NDL 284 (795)
T ss_dssp EEEEEEETTEEEEEEBS---------SCEEEEETTTTEEEEECCCTTCT-TSCS-CSBEEEEEECTTSCEEEEES--SCE
T ss_pred EEEEEcCCCCEEEEECC---------CCeEEEeCCCCeEEEeecCCCCc-cccC-CCeEEEEEEcCCCCEEEEeC--Chh
Confidence 1233 356787766521 23666666566676653221000 0000 11344443 34667777653 379
Q ss_pred EEEECCCCcEEEccC
Q 015511 366 LVYDMNLKQWRWSHK 380 (405)
Q Consensus 366 ~~Yd~~~~~w~~l~~ 380 (405)
..||.++++++.+..
T Consensus 285 ~~~~~~~~~~~~~~~ 299 (795)
T 4a2l_A 285 NIYHEGTDSFASYSS 299 (795)
T ss_dssp EEEETTTTEEEEECC
T ss_pred heEcCCCCeEEEEec
Confidence 999999999988754
No 140
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=54.95 E-value=1.1e+02 Score=26.65 Aligned_cols=183 Identities=9% Similarity=-0.026 Sum_probs=90.0
Q ss_pred ceEEEEeCcccceeec-cCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCC---Cccccc
Q 015511 147 SELYVCNPISKSWKKL-EEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTM---MWVTSW 222 (405)
Q Consensus 147 ~~~~v~NP~T~~~~~l-P~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~---~W~~~~ 222 (405)
..+.++++.+++...+ +.. ....++.+|+..+ +||+.... ...+..++.... .-....
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~-------~~p~g~~~d~~~~--~ly~~D~~---------~~~I~~~~~~g~~~~~~~~~~ 71 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNL-------RNVVALDTEVASN--RIYWSDLS---------QRMICSTQLDRAHGVSSYDTV 71 (316)
T ss_dssp SSEEEEETTSCCCEEEECSC-------SSEEEEEEETTTT--EEEEEETT---------TTEEEEEEC--------CEEE
T ss_pred CeEEEEECCCcceEehhcCC-------CceEEEEEEeCCC--EEEEEECC---------CCcEEEEECCCCCCCcccEEE
Confidence 5677888888776554 321 1235666765432 46665421 236777776541 211100
Q ss_pred ccccccccCCCccEEE---CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEE--eCCcE
Q 015511 223 KEVLTGWRAGDESIIC---DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMN--LKEKL 297 (405)
Q Consensus 223 ~~~~~~~~~~~~~v~~---~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~--~~G~L 297 (405)
. ...... ..++.+ +|.+||.... ...|..+|+....-.. .+.... ..-..+++ .+|.|
T Consensus 72 ~--~~~~~~-p~glavd~~~~~ly~~d~~--------~~~I~~~~~~g~~~~~-----~~~~~~-~~P~~iavdp~~g~l 134 (316)
T 1ijq_A 72 I--SRDIQA-PDGLAVDWIHSNIYWTDSV--------LGTVSVADTKGVKRKT-----LFRENG-SKPRAIVVDPVHGFM 134 (316)
T ss_dssp E--CSSCSC-CCEEEEETTTTEEEEEETT--------TTEEEEEETTSSSEEE-----EEECTT-CCEEEEEEETTTTEE
T ss_pred E--eCCCCC-cCEEEEeecCCeEEEEECC--------CCEEEEEeCCCCceEE-----EEECCC-CCcceEEeCCCCCEE
Confidence 0 011111 133433 6899998632 2579999987543221 111110 01123444 36788
Q ss_pred EEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEE
Q 015511 298 VMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 298 ~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~ 377 (405)
|+..... ...+.+..++...=+.+..-. +. ...-+++...++.||+.......+.++|++.+.-+.
T Consensus 135 y~~d~~~-------~~~I~~~~~dG~~~~~~~~~~------~~-~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~ 200 (316)
T 1ijq_A 135 YWTDWGT-------PAKIKKGGLNGVDIYSLVTEN------IQ-WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT 200 (316)
T ss_dssp EEEECSS-------SCEEEEEETTSCCEEEEECSS------CS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred EEEccCC-------CCeEEEEcCCCCCeEEEEECC------CC-CceEEEEeccCCEEEEEECCCCeEEEEecCCCceEE
Confidence 8876311 123555555433212221110 00 112234444688899887667789999988654444
Q ss_pred c
Q 015511 378 S 378 (405)
Q Consensus 378 l 378 (405)
+
T Consensus 201 ~ 201 (316)
T 1ijq_A 201 I 201 (316)
T ss_dssp E
T ss_pred E
Confidence 4
No 141
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=54.71 E-value=1.1e+02 Score=26.63 Aligned_cols=201 Identities=12% Similarity=0.043 Sum_probs=96.1
Q ss_pred eEEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCC-CCcEEEEEEeeeccCCCccccceE
Q 015511 129 WFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRV-SHRYTVSIVKSKQVTGNFFQWELS 207 (405)
Q Consensus 129 ~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~-~~~ykv~~~~~~~~~~~~~~~~~~ 207 (405)
.+.++.+|.+.+... ...+.++|..+++...--... + .-....+.+++. .+.+ ++.++. .-.
T Consensus 88 ~~s~s~D~~i~~w~~--~~~~~~~~~~~~~~~~~~~~~--~--~~~v~~~~~~~~~~~~~--l~s~s~---------dg~ 150 (343)
T 3lrv_A 88 IISRGPCNRLLLLYP--GNQITILDSKTNKVLREIEVD--S--ANEIIYMYGHNEVNTEY--FIWADN---------RGT 150 (343)
T ss_dssp EEEECSTTEEEEEET--TTEEEEEETTTCCEEEEEECC--C--SSCEEEEECCC---CCE--EEEEET---------TCC
T ss_pred eEEecCCCeEEEEEc--cCceEEeecCCcceeEEeecC--C--CCCEEEEEcCCCCCCCE--EEEEeC---------CCc
Confidence 455666777777654 356778888887733221111 1 011234445441 2233 333321 126
Q ss_pred EEEEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCC-c
Q 015511 208 IHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPC-A 284 (405)
Q Consensus 208 ~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~-~ 284 (405)
+.+||..++.-..... .........+.+ +|.+...+... ..|..||+.+.+-. ...+.. .
T Consensus 151 i~~wd~~~~~~~~~~~---~~~~~~i~~~~~~pdg~~lasg~~d--------g~i~iwd~~~~~~~------~~~~~~~h 213 (343)
T 3lrv_A 151 IGFQSYEDDSQYIVHS---AKSDVEYSSGVLHKDSLLLALYSPD--------GILDVYNLSSPDQA------SSRFPVDE 213 (343)
T ss_dssp EEEEESSSSCEEEEEC---CCSSCCCCEEEECTTSCEEEEECTT--------SCEEEEESSCTTSC------CEECCCCT
T ss_pred EEEEECCCCcEEEEEe---cCCCCceEEEEECCCCCEEEEEcCC--------CEEEEEECCCCCCC------ccEEeccC
Confidence 8899987665422110 000111122333 56666665332 47999999877621 011111 1
Q ss_pred ccc-CceEE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccCh---hHHhccCCCCceeEEeeCCCEEEEEe
Q 015511 285 LTC-GRLMN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPH---KFFQGFGEFDDVFASSGTDDLIYIQS 359 (405)
Q Consensus 285 ~~~-~~l~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~---~~~~~~~~~~~~~~~~~~~~~i~~~~ 359 (405)
... ..+.. -+|++++.++ . ..+.+|++...+= +..+.. .... . ....+++...|..+....
T Consensus 214 ~~~v~~l~fs~~g~~l~s~~-~--------~~v~iwd~~~~~~--~~~~~~~~~~~~~-~--~~~~~~~~~~g~~l~~~s 279 (343)
T 3lrv_A 214 EAKIKEVKFADNGYWMVVEC-D--------QTVVCFDLRKDVG--TLAYPTYTIPEFK-T--GTVTYDIDDSGKNMIAYS 279 (343)
T ss_dssp TSCEEEEEECTTSSEEEEEE-S--------SBEEEEETTSSTT--CBSSCCCBC--------CCEEEEECTTSSEEEEEE
T ss_pred CCCEEEEEEeCCCCEEEEEe-C--------CeEEEEEcCCCCc--ceeeccccccccc-c--cceEEEECCCCCEEEEec
Confidence 111 11222 2566665554 1 2599999886421 111110 0000 0 001244455676666654
Q ss_pred CCCCeEEEEEC--CCCcEEE
Q 015511 360 YGAPSLLVYDM--NLKQWRW 377 (405)
Q Consensus 360 ~~~~~~~~Yd~--~~~~w~~ 377 (405)
..+..+.+|+. ..+.|+.
T Consensus 280 ~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 280 NESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp TTTTEEEEEEECTTTCSEEE
T ss_pred CCCCcEEEEEEcccccceEe
Confidence 43667888887 5557887
No 142
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=54.60 E-value=1.1e+02 Score=26.60 Aligned_cols=213 Identities=14% Similarity=0.040 Sum_probs=98.1
Q ss_pred EEEecCceEEEEeCCCCceEEEEeCccc--ceeeccCCCCC---CCCccceeEEEEeCCCCcEEEEEEeeeccCCCcccc
Q 015511 130 FIASSYGLVCFMDNDSRSELYVCNPISK--SWKKLEEPPGL---KFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQW 204 (405)
Q Consensus 130 ~~~s~~Gll~~~~~~~~~~~~v~NP~T~--~~~~lP~~~~~---~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~ 204 (405)
+....+|-+++.+.. ...++++|+-.+ ....+...... ........++.+++..+ .+++.....
T Consensus 96 ia~d~~g~l~v~d~~-~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g--~lyv~d~~~-------- 164 (329)
T 3fvz_A 96 LSIDTDGNYWVTDVA-LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG--AVFVSDGYC-------- 164 (329)
T ss_dssp EEECTTSCEEEEETT-TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC--CEEEEECSS--------
T ss_pred EEECCCCCEEEEECC-CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC--eEEEEeCCC--------
Confidence 334456777776543 478999998765 23334321100 00111235667776222 345544210
Q ss_pred ceEEEEEeCCCCCccc-cccc-cc----ccccCCCccEEE--C-cEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhc
Q 015511 205 ELSIHIYDSDTMMWVT-SWKE-VL----TGWRAGDESIIC--D-GVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLI 275 (405)
Q Consensus 205 ~~~~~vy~s~~~~W~~-~~~~-~~----~~~~~~~~~v~~--~-g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~ 275 (405)
...+.+|+. ++.... .... .. .........+.+ + |.+|+.... ...|..||+.+.+...
T Consensus 165 ~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~--------~~~I~~~~~~~G~~~~--- 232 (329)
T 3fvz_A 165 NSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE--------NGRIQCFKTDTKEFVR--- 232 (329)
T ss_dssp CCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT--------TTEEEEEETTTCCEEE---
T ss_pred CCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC--------CCEEEEEECCCCcEEE---
Confidence 236778874 333211 1100 00 001111234554 4 889888632 2589999998665431
Q ss_pred ccccccCCcccc-CceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCE
Q 015511 276 KSFIPVPCALTC-GRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDL 354 (405)
Q Consensus 276 ~~~~~~p~~~~~-~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 354 (405)
.+..+..... ..+....|.++...+... ........+.+|++.+++......-....+. ...-+++.. ++.
T Consensus 233 --~~~~~~~~~~~~~~~~~pg~~~~~~g~~~-v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~----~p~~ia~~~-dG~ 304 (329)
T 3fvz_A 233 --EIKHASFGRNVFAISYIPGFLFAVNGKPY-FGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD----MPHDIVASE-DGT 304 (329)
T ss_dssp --EECCTTTTTCEEEEEEETTEEEEEECCCC-TTCSCCCCEEEEETTTCCEEEEECCSSSCCS----SEEEEEECT-TSE
T ss_pred --EEeccccCCCcceeeecCCEEEEeCCCEE-eccCCCcEEEEEEcCCCeEEEEEcCCCCccC----CeeEEEECC-CCC
Confidence 1222211111 112222244444443211 0011134688888776654433210000000 011223333 448
Q ss_pred EEEEeCCCCeEEEEECCCC
Q 015511 355 IYIQSYGAPSLLVYDMNLK 373 (405)
Q Consensus 355 i~~~~~~~~~~~~Yd~~~~ 373 (405)
||+.......+.+|+++.+
T Consensus 305 lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 305 VYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEEEESSSCCEEEEEEEEC
T ss_pred EEEEECCCCEEEEEeCCcc
Confidence 9998777778999988653
No 143
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=52.78 E-value=36 Score=25.16 Aligned_cols=40 Identities=15% Similarity=0.332 Sum_probs=29.8
Q ss_pred ceEEEEeCccc-ceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEe
Q 015511 147 SELYVCNPISK-SWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVK 193 (405)
Q Consensus 147 ~~~~v~NP~T~-~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~ 193 (405)
-.++++||.|+ .|.+.... ...+.+..|...+.|+|+.+.
T Consensus 11 A~V~~~D~~tk~~W~p~g~~-------~~~V~~~~d~~~~~yRIv~~~ 51 (120)
T 1ddw_A 11 AHVFQIDPNTKKNWVPTSKH-------AVTVSYFYDSTRNVYRIISLD 51 (120)
T ss_dssp EEEEEECTTTSCSEEESCSS-------CEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEcCCCCCceEeCCCC-------ceEEEEEEcCCCCEEEEEEcc
Confidence 56899999996 99875432 134667778888889998765
No 144
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=52.65 E-value=1.8e+02 Score=28.72 Aligned_cols=138 Identities=8% Similarity=0.047 Sum_probs=62.5
Q ss_pred CceEEEEeCccc-ceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccc
Q 015511 146 RSELYVCNPISK-SWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKE 224 (405)
Q Consensus 146 ~~~~~v~NP~T~-~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~ 224 (405)
...+.+||..++ .....-.. + ......+.+.|.. -..+++++. .-.+.+|+..++.-....
T Consensus 118 dg~i~vw~~~~~~~~~~~~~~---~--~~~v~~~~~~p~~--~~~l~~~~~---------dg~v~vwd~~~~~~~~~~-- 179 (814)
T 3mkq_A 118 DLTVKLWNWENNWALEQTFEG---H--EHFVMCVAFNPKD--PSTFASGCL---------DRTVKVWSLGQSTPNFTL-- 179 (814)
T ss_dssp TSEEEEEEGGGTSEEEEEEEC---C--SSCEEEEEEETTE--EEEEEEEET---------TSEEEEEETTCSSCSEEE--
T ss_pred CCEEEEEECCCCceEEEEEcC---C--CCcEEEEEEEcCC--CCEEEEEeC---------CCeEEEEECCCCcceeEE--
Confidence 478899998876 33222110 1 1112334444421 133444432 127889987654432211
Q ss_pred ccccccCCCccEEE----CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceE-EeCCcEEE
Q 015511 225 VLTGWRAGDESIIC----DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEKLVM 299 (405)
Q Consensus 225 ~~~~~~~~~~~v~~----~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~L~~ 299 (405)
..........+.. +|...+.+.. ...+..||+.+.+-.. .+..... ....+. .-+|.+++
T Consensus 180 -~~~~~~~v~~~~~~~~~~~~~l~~~~~--------dg~i~~~d~~~~~~~~-----~~~~~~~-~v~~~~~~~~~~~l~ 244 (814)
T 3mkq_A 180 -TTGQERGVNYVDYYPLPDKPYMITASD--------DLTIKIWDYQTKSCVA-----TLEGHMS-NVSFAVFHPTLPIII 244 (814)
T ss_dssp -ECCCTTCCCEEEECCSTTCCEEEEECT--------TSEEEEEETTTTEEEE-----EEECCSS-CEEEEEECSSSSEEE
T ss_pred -ecCCCCCEEEEEEEECCCCCEEEEEeC--------CCEEEEEECCCCcEEE-----EEcCCCC-CEEEEEEcCCCCEEE
Confidence 0111111122322 5555555532 2478999987765211 1111110 011122 23566666
Q ss_pred EEccccccccCccceEEEEEEeCce
Q 015511 300 VGGIGKQDRPDIIKGIGIWVLNGKE 324 (405)
Q Consensus 300 v~~~~~~~~~~~~~~~~vw~l~~~~ 324 (405)
+++.+ ..+.+|++...+
T Consensus 245 ~~~~d--------g~v~vwd~~~~~ 261 (814)
T 3mkq_A 245 SGSED--------GTLKIWNSSTYK 261 (814)
T ss_dssp EEETT--------SCEEEEETTTCS
T ss_pred EEeCC--------CeEEEEECCCCc
Confidence 65432 358999887643
No 145
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=52.39 E-value=1.1e+02 Score=26.27 Aligned_cols=210 Identities=13% Similarity=0.056 Sum_probs=97.2
Q ss_pred CceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeC-CCCcEEEEEEeeecc-C-CC------ccccc
Q 015511 135 YGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDR-VSHRYTVSIVKSKQV-T-GN------FFQWE 205 (405)
Q Consensus 135 ~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~-~~~~ykv~~~~~~~~-~-~~------~~~~~ 205 (405)
+|.|++.+.. ..++++|+.+++...+....... .....-.+..|+ .. .+++...... . .. .....
T Consensus 91 ~g~l~v~d~~--~~i~~~d~~~g~~~~~~~~~~~~-~~~~p~~i~~d~~~G---~l~v~d~~~~~~~~~~~~~~~~~~~~ 164 (322)
T 2fp8_A 91 NNQLYIVDCY--YHLSVVGSEGGHATQLATSVDGV-PFKWLYAVTVDQRTG---IVYFTDVSTLYDDRGVQQIMDTSDKT 164 (322)
T ss_dssp TTEEEEEETT--TEEEEECTTCEECEEEESEETTE-ECSCEEEEEECTTTC---CEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred CCcEEEEECC--CCEEEEeCCCCEEEEecccCCCC-cccccceEEEecCCC---EEEEECCcccccccccceehcccCCC
Confidence 6877777542 45889999988766554321100 001123455666 43 3555432100 0 00 00001
Q ss_pred eEEEEEeCCCCCcccccccccccccCCCccEEE--Cc-EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccC
Q 015511 206 LSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DG-VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVP 282 (405)
Q Consensus 206 ~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g-~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p 282 (405)
-.+..|+..++........ . .....+.+ +| .+|+.... ...|.+||+......... .....+
T Consensus 165 g~v~~~d~~~~~~~~~~~~----~-~~p~gia~~~dg~~lyv~d~~--------~~~I~~~~~~~~~~~~~~--~~~~~~ 229 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLKE----L-HVPGGAEVSADSSFVLVAEFL--------SHQIVKYWLEGPKKGTAE--VLVKIP 229 (322)
T ss_dssp EEEEEEETTTTEEEEEEEE----E-SCCCEEEECTTSSEEEEEEGG--------GTEEEEEESSSTTTTCEE--EEEECS
T ss_pred ceEEEEeCCCCEEEEeccC----C-ccCcceEECCCCCEEEEEeCC--------CCeEEEEECCCCcCCccc--eEEeCC
Confidence 3577888876655432111 1 11234444 45 47766432 258999999864321110 011222
Q ss_pred CccccCce-EEeCCcEEEEEccccccccCccceEEEEEEeC-ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC
Q 015511 283 CALTCGRL-MNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG-KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY 360 (405)
Q Consensus 283 ~~~~~~~l-~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~-~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 360 (405)
. ...+ +..+|+|++...............-.|+.++. ++-......+.... + ..+-++...++.+|+...
T Consensus 230 g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~--~---~~~~~~~~~~g~L~v~~~ 301 (322)
T 2fp8_A 230 N---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA--G---EHFEQIQEHDGLLYIGTL 301 (322)
T ss_dssp S---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT--T---SCCCEEEEETTEEEEECS
T ss_pred C---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc--c---ccceEEEEeCCEEEEeec
Confidence 1 1123 33468888886421000000001245666664 33333333332110 1 012233335789999876
Q ss_pred CCCeEEEEECCCC
Q 015511 361 GAPSLLVYDMNLK 373 (405)
Q Consensus 361 ~~~~~~~Yd~~~~ 373 (405)
....+.+|+++.+
T Consensus 302 ~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 302 FHGSVGILVYDKK 314 (322)
T ss_dssp SCSEEEEEEC---
T ss_pred CCCceEEEecccc
Confidence 6678999998755
No 146
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=51.90 E-value=1.3e+02 Score=26.66 Aligned_cols=190 Identities=9% Similarity=0.014 Sum_probs=95.7
Q ss_pred CceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCC
Q 015511 135 YGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSD 214 (405)
Q Consensus 135 ~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~ 214 (405)
.+.|++... ..+..+++.+.....+.... ....++.+|+..+ +||+.... ...+..++..
T Consensus 44 ~~~ll~~~~---~~I~~i~~~g~~~~~~~~~~------~~~~~l~~d~~~~--~ly~~D~~---------~~~I~r~~~~ 103 (349)
T 3v64_C 44 EPVLLFANR---IDIRQVLPHRSEYTLLLNNL------ENAIALDFHHRRE--LVFWSDVT---------LDRILRANLN 103 (349)
T ss_dssp CCEEEEECB---SCEEEECTTSCCEEEEECSC------SCEEEEEEETTTT--EEEEEETT---------TTEEEEEETT
T ss_pred CceeEeecc---cceEEEeCCCCeeEEeecCC------CceEEEEEecccc--EEEEEecc---------CCceEEEecC
Confidence 455555432 55777788776665543211 1235777775432 56665321 2367777776
Q ss_pred CCCcccccccccccccCCCccEEE---CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc-Cce
Q 015511 215 TMMWVTSWKEVLTGWRAGDESIIC---DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC-GRL 290 (405)
Q Consensus 215 ~~~W~~~~~~~~~~~~~~~~~v~~---~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l 290 (405)
...-..... .... ...++.+ +|.|||.... ...|..+|+....-.. .+ ...... ..+
T Consensus 104 g~~~~~~~~---~~~~-~p~glavd~~~g~ly~~d~~--------~~~I~~~~~dG~~~~~-----l~--~~~l~~P~~i 164 (349)
T 3v64_C 104 GSNVEEVVS---TGLE-SPGGLAVDWVHDKLYWTDSG--------TSRIEVANLDGAHRKV-----LL--WQSLEKPRAI 164 (349)
T ss_dssp SCSCEEEEC---SSCS-CCCEEEEETTTTEEEEEETT--------TTEEEEEETTSCSCEE-----EE--CTTCSCEEEE
T ss_pred CCCceEEEe---CCCC-CccEEEEecCCCeEEEEcCC--------CCeEEEEcCCCCceEE-----EE--eCCCCCcceE
Confidence 544322111 0111 1123333 7899998632 2489999987654211 11 111111 234
Q ss_pred EEe--CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEE
Q 015511 291 MNL--KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVY 368 (405)
Q Consensus 291 ~~~--~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Y 368 (405)
++. +|.||+..... ...+....++...=+.+. ... +. .+.-+++...++.||+.......+.++
T Consensus 165 avdp~~g~ly~td~~~-------~~~I~r~~~dG~~~~~~~--~~~----~~-~PnGla~d~~~~~lY~aD~~~~~I~~~ 230 (349)
T 3v64_C 165 ALHPMEGTIYWTDWGN-------TPRIEASSMDGSGRRIIA--DTH----LF-WPNGLTIDYAGRRMYWVDAKHHVIERA 230 (349)
T ss_dssp EEETTTTEEEEEECSS-------SCEEEEEETTSCSCEESC--CSS----CS-CEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEecCcCeEEEeccCC-------CCEEEEEeCCCCCcEEEE--ECC----CC-CcceEEEeCCCCEEEEEECCCCEEEEE
Confidence 443 67888876421 133555555532211111 100 00 112234444688899887667788899
Q ss_pred ECCCCcEEE
Q 015511 369 DMNLKQWRW 377 (405)
Q Consensus 369 d~~~~~w~~ 377 (405)
|++...-+.
T Consensus 231 ~~dG~~~~~ 239 (349)
T 3v64_C 231 NLDGSHRKA 239 (349)
T ss_dssp ETTSCSCEE
T ss_pred eCCCCceEE
Confidence 988654333
No 147
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=51.75 E-value=1.3e+02 Score=26.54 Aligned_cols=21 Identities=5% Similarity=-0.102 Sum_probs=13.5
Q ss_pred CEEEEEeCCCCeEEEEECCCCc
Q 015511 353 DLIYIQSYGAPSLLVYDMNLKQ 374 (405)
Q Consensus 353 ~~i~~~~~~~~~~~~Yd~~~~~ 374 (405)
+.++. ...+..+.+||+++++
T Consensus 377 ~~l~s-~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 377 ESLCC-VCLDRSIRWFREAGGK 397 (397)
T ss_dssp CEEEE-EETTTEEEEEEEEC--
T ss_pred ceEEE-ecCCCcEEEEEcCCCC
Confidence 34444 4467899999998764
No 148
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=51.73 E-value=2e+02 Score=28.78 Aligned_cols=199 Identities=9% Similarity=0.041 Sum_probs=100.7
Q ss_pred cCce-EEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015511 134 SYGL-VCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD 212 (405)
Q Consensus 134 ~~Gl-l~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~ 212 (405)
.+|- |.+... ...++++|+.++++..+..... .........+..|+.. .+.+ +.. ..+.+|+
T Consensus 415 ~~g~~lWigt~--~~Gl~~~d~~~~~~~~~~~~~~-~l~~~~v~~i~~d~~g---~lwi-gt~----------~Gl~~~~ 477 (795)
T 4a2l_A 415 EKKSLVYIGTH--AGGLSILHRNSGQVENFNQRNS-QLVNENVYAILPDGEG---NLWL-GTL----------SALVRFN 477 (795)
T ss_dssp TTTTEEEEEET--TTEEEEEETTTCCEEEECTTTS-CCSCSCEEEEEECSSS---CEEE-EES----------SCEEEEE
T ss_pred CCCCEEEEEeC--cCceeEEeCCCCcEEEeecCCC-CcCCCeeEEEEECCCC---CEEE-Eec----------CceeEEe
Confidence 4565 555432 3678999999999887754211 0111122334444322 2333 221 2577889
Q ss_pred CCCCCcccccccc-ccccc-CCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcc-cccccCCcccc
Q 015511 213 SDTMMWVTSWKEV-LTGWR-AGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIK-SFIPVPCALTC 287 (405)
Q Consensus 213 s~~~~W~~~~~~~-~~~~~-~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~-~~~~~p~~~~~ 287 (405)
..++.|....... +.... .....++. +|.+++-+. ..|..||+.+.++ ..... ....++.. ..
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~----------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~-~i 545 (795)
T 4a2l_A 478 PEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE----------EGLSVFKQEGLDI-QKASILPVSNVTKL-FT 545 (795)
T ss_dssp TTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES----------SCEEEEEEETTEE-EECCCSCSCGGGGS-CE
T ss_pred CCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC----------CceEEEeCCCCeE-EEecCCCCCCCCCC-ee
Confidence 8888886643210 00111 11122333 455554332 2589999988776 21000 00011111 11
Q ss_pred CceEE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEe-eCCCEEEEEeCCCCeE
Q 015511 288 GRLMN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASS-GTDDLIYIQSYGAPSL 365 (405)
Q Consensus 288 ~~l~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~ 365 (405)
..+.+ .+|.|.+.+.. .+..|+.+.++++....- .++.. ..+.++. ...+.+++.. ...+
T Consensus 546 ~~i~~d~~g~lWigT~~----------Gl~~~d~~~~~~~~~~~~-----~gl~~-~~i~~i~~d~~g~lWi~t--~~Gl 607 (795)
T 4a2l_A 546 NCIYEASNGIIWVGTRE----------GFYCFNEKDKQIKRYNTT-----NGLPN-NVVYGILEDSFGRLWLST--NRGI 607 (795)
T ss_dssp EEEEECTTSCEEEEESS----------CEEEEETTTTEEEEECGG-----GTCSC-SCEEEEEECTTSCEEEEE--TTEE
T ss_pred EEEEECCCCCEEEEeCC----------CceeECCCCCcEEEeCCC-----CCCch-hheEEEEECCCCCEEEEc--CCce
Confidence 12333 46788876531 266666556666654321 11111 1344443 3456777765 3589
Q ss_pred EEEECCCCcEEEcc
Q 015511 366 LVYDMNLKQWRWSH 379 (405)
Q Consensus 366 ~~Yd~~~~~w~~l~ 379 (405)
..||+++++++...
T Consensus 608 ~~~~~~~~~~~~~~ 621 (795)
T 4a2l_A 608 SCFNPETEKFRNFT 621 (795)
T ss_dssp EEEETTTTEEEEEC
T ss_pred EEEcCCCCcEEEcC
Confidence 99999999988764
No 149
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=50.37 E-value=1.4e+02 Score=26.79 Aligned_cols=16 Identities=6% Similarity=0.181 Sum_probs=12.3
Q ss_pred CceEEEEeCcccceee
Q 015511 146 RSELYVCNPISKSWKK 161 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~ 161 (405)
++.+.|||..+++...
T Consensus 129 Dg~i~vwd~~~~~~~~ 144 (410)
T 1vyh_C 129 DATIKVWDYETGDFER 144 (410)
T ss_dssp SSCEEEEETTTCCCCE
T ss_pred CCeEEEEECCCCcEEE
Confidence 4778999999887643
No 150
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=50.27 E-value=2.5e+02 Score=29.60 Aligned_cols=197 Identities=12% Similarity=0.090 Sum_probs=92.7
Q ss_pred ecCceEEEEeCCCCceEEEEeCcccceee-ccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEE
Q 015511 133 SSYGLVCFMDNDSRSELYVCNPISKSWKK-LEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIY 211 (405)
Q Consensus 133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy 211 (405)
+.+|-++..+. ..+.+.+||..|++... +.. + ......+.+++.. .+ ++.++. ...+.+|
T Consensus 624 s~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~----h--~~~v~~~~~s~~~-~~--l~s~~~---------d~~v~vw 684 (1249)
T 3sfz_A 624 SQDGQRIASCG-ADKTLQVFKAETGEKLLDIKA----H--EDEVLCCAFSSDD-SY--IATCSA---------DKKVKIW 684 (1249)
T ss_dssp CTTSSEEEEEE-TTSCEEEEETTTCCEEEEECC----C--SSCEEEEEECTTS-SE--EEEEET---------TSEEEEE
T ss_pred CCCCCEEEEEe-CCCeEEEEECCCCCEEEEecc----C--CCCEEEEEEecCC-CE--EEEEeC---------CCeEEEE
Confidence 44554444433 24789999999987643 321 1 1122345555543 23 333331 1378999
Q ss_pred eCCCCCcccccccccccccCCCccEEE----CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc
Q 015511 212 DSDTMMWVTSWKEVLTGWRAGDESIIC----DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC 287 (405)
Q Consensus 212 ~s~~~~W~~~~~~~~~~~~~~~~~v~~----~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~ 287 (405)
|..++.-...- .........+.+ ++.+.+.+.. ...+..+|+.+.+-. .........
T Consensus 685 d~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~sg~~--------d~~v~vwd~~~~~~~-------~~~~~h~~~ 745 (1249)
T 3sfz_A 685 DSATGKLVHTY----DEHSEQVNCCHFTNKSNHLLLATGSN--------DFFLKLWDLNQKECR-------NTMFGHTNS 745 (1249)
T ss_dssp ETTTCCEEEEE----ECCSSCEEEEEECSSSSCCEEEEEET--------TSCEEEEETTSSSEE-------EEECCCSSC
T ss_pred ECCCCceEEEE----cCCCCcEEEEEEecCCCceEEEEEeC--------CCeEEEEECCCcchh-------heecCCCCC
Confidence 98776532211 111111112222 2223333322 136889998876622 111111111
Q ss_pred C-ceE-EeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHh------ccCCCCceeEEeeCCCEEEEEe
Q 015511 288 G-RLM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQ------GFGEFDDVFASSGTDDLIYIQS 359 (405)
Q Consensus 288 ~-~l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~------~~~~~~~~~~~~~~~~~i~~~~ 359 (405)
. .+. .-+|++++.++.+ ..+.+|++...+-............ .....-..+++...|+.+.+..
T Consensus 746 v~~~~~sp~~~~l~s~s~d--------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 817 (1249)
T 3sfz_A 746 VNHCRFSPDDELLASCSAD--------GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 817 (1249)
T ss_dssp EEEEEECSSTTEEEEEESS--------SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE
T ss_pred EEEEEEecCCCEEEEEECC--------CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc
Confidence 1 122 2356666665432 4599999986543332222110000 0000001123345677777765
Q ss_pred CCCCeEEEEECCCCcEEE
Q 015511 360 YGAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 360 ~~~~~~~~Yd~~~~~w~~ 377 (405)
...+.+||+.++....
T Consensus 818 --~~~v~~~d~~~~~~~~ 833 (1249)
T 3sfz_A 818 --KNKVLLFDIHTSGLLA 833 (1249)
T ss_dssp --TTEEEEEETTTCCEEE
T ss_pred --CCcEEEEEecCCCcee
Confidence 4689999999886544
No 151
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=49.80 E-value=43 Score=24.38 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=30.3
Q ss_pred ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEe
Q 015511 147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVK 193 (405)
Q Consensus 147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~ 193 (405)
-.++.+||.|++|...... .....+.+..|...+.|+|+...
T Consensus 11 A~V~~~d~~~~~W~p~~~~-----~g~s~V~~~~d~~~~~yrIv~~~ 52 (112)
T 1evh_A 11 AAVMVYDDANKKWVPAGGS-----TGFSRVHIYHHTGNNTFRVVGRK 52 (112)
T ss_dssp EEEEEEETTTTEEEEGGGC-----CSCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEcCCCCceEECCCC-----CCceEEEEEEECCCCEEEEEEEE
Confidence 4688999999999766421 11334778888888889888764
No 152
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=48.60 E-value=1.3e+02 Score=25.92 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=42.2
Q ss_pred ceEEEEEEeC------ceeEEEeccChhHHhccCCCCceeEEee-CCCEEEEEeCCCCeEEEEECCCCcEEEccCCCCCC
Q 015511 313 KGIGIWVLNG------KEWQEVARMPHKFFQGFGEFDDVFASSG-TDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTK 385 (405)
Q Consensus 313 ~~~~vw~l~~------~~W~~v~~i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~~p~~~ 385 (405)
..+.+|++.. ..|..+..++.. ....+.++.. .++.|.. ...+..+.+||..+++|+.+......+
T Consensus 221 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~v~~s~~~~l~s-~~~dg~v~iw~~~~~~~~~~~~~~~~h 293 (330)
T 2hes_X 221 STVRVWKYMGDDEDDQQEWVCEAILPDV------HKRQVYNVAWGFNGLIAS-VGADGVLAVYEEVDGEWKVFAKRALCH 293 (330)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEEECCSC------CSSCEEEEEECTTSCEEE-EETTSCEEEEEEETTEEEEEEEESCTT
T ss_pred CeEEEEEecCCCccccceeEEeeecccc------cccceEEEEEcCCCEEEE-EeCCCEEEEEEcCCCceEEEecccccc
Confidence 4599999974 257666555421 0112333322 3444433 335778999999999887654332222
Q ss_pred CCcccceeeeeece
Q 015511 386 RFPLQLFTGFCFEP 399 (405)
Q Consensus 386 ~~~~~~~~~~~~~p 399 (405)
.. .....++|.|
T Consensus 294 ~~--~~v~~v~~~~ 305 (330)
T 2hes_X 294 GV--YEINVVKWLE 305 (330)
T ss_dssp TT--SCEEEEEEC-
T ss_pred cc--ceEEEEEEec
Confidence 21 1245666666
No 153
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=48.48 E-value=1.6e+02 Score=26.77 Aligned_cols=64 Identities=13% Similarity=0.066 Sum_probs=36.5
Q ss_pred CcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCcee--EEeeCCCEEEEEeCCCCeEEEEECCC
Q 015511 295 EKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVF--ASSGTDDLIYIQSYGAPSLLVYDMNL 372 (405)
Q Consensus 295 G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~Yd~~~ 372 (405)
|++++.+..+ ..+.+|++....-........ ...+. ++. .++.++... .+..+.+||+++
T Consensus 210 ~~~l~s~~~d--------~~i~vwd~~~~~~~~~~~~~h--------~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~ 271 (450)
T 2vdu_B 210 HQFIITSDRD--------EHIKISHYPQCFIVDKWLFGH--------KHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKT 271 (450)
T ss_dssp CEEEEEEETT--------SCEEEEEESCTTCEEEECCCC--------SSCEEEEEEC-STTEEEEEE-SSSEEEEEETTT
T ss_pred CcEEEEEcCC--------CcEEEEECCCCceeeeeecCC--------CCceEEEEEC-CCCEEEEEe-CCCeEEEEECCC
Confidence 6666665432 459999998654332211111 11222 334 566666544 567999999998
Q ss_pred CcEE
Q 015511 373 KQWR 376 (405)
Q Consensus 373 ~~w~ 376 (405)
++..
T Consensus 272 ~~~~ 275 (450)
T 2vdu_B 272 GKNL 275 (450)
T ss_dssp CCEE
T ss_pred CcEe
Confidence 8643
No 154
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=48.29 E-value=1.6e+02 Score=26.71 Aligned_cols=145 Identities=12% Similarity=0.088 Sum_probs=72.4
Q ss_pred cCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeC
Q 015511 134 SYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDS 213 (405)
Q Consensus 134 ~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s 213 (405)
.+.+++.... .+.+.+||..+++....-.. + ......+.+++.. .+ ++.++. ...+.+||.
T Consensus 279 ~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~---~--~~~v~~~~~~~~~-~~--l~sg~~---------dg~i~vwd~ 339 (464)
T 3v7d_B 279 HGNIVVSGSY--DNTLIVWDVAQMKCLYILSG---H--TDRIYSTIYDHER-KR--CISASM---------DTTIRIWDL 339 (464)
T ss_dssp ETTEEEEEET--TSCEEEEETTTTEEEEEECC---C--SSCEEEEEEETTT-TE--EEEEET---------TSCEEEEET
T ss_pred CCCEEEEEeC--CCeEEEEECCCCcEEEEecC---C--CCCEEEEEEcCCC-CE--EEEEeC---------CCcEEEEEC
Confidence 3444444433 47899999988766543211 1 1122344455532 22 333332 126889998
Q ss_pred CCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcc-ccCceEE
Q 015511 214 DTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCAL-TCGRLMN 292 (405)
Q Consensus 214 ~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~-~~~~l~~ 292 (405)
.++.-... ..........+..++...+.+... ..+..||+.+..-. ....... .......
T Consensus 340 ~~~~~~~~----~~~h~~~v~~~~~~~~~l~s~s~d--------g~v~vwd~~~~~~~-------~~~~~~~~~~~~~~~ 400 (464)
T 3v7d_B 340 ENGELMYT----LQGHTALVGLLRLSDKFLVSAAAD--------GSIRGWDANDYSRK-------FSYHHTNLSAITTFY 400 (464)
T ss_dssp TTTEEEEE----ECCCSSCEEEEEECSSEEEEEETT--------SEEEEEETTTCCEE-------EEEECTTCCCEEEEE
T ss_pred CCCcEEEE----EeCCCCcEEEEEEcCCEEEEEeCC--------CcEEEEECCCCcee-------eeecCCCCccEEEEE
Confidence 76542111 111111123344556544444322 47999999875521 1111111 1112334
Q ss_pred eCCcEEEEEccccccccCccceEEEEEEeCcee
Q 015511 293 LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEW 325 (405)
Q Consensus 293 ~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W 325 (405)
.+|++++++. + ..+.+|+++.++-
T Consensus 401 ~~~~~l~~~~-d--------g~i~iwd~~~g~~ 424 (464)
T 3v7d_B 401 VSDNILVSGS-E--------NQFNIYNLRSGKL 424 (464)
T ss_dssp ECSSEEEEEE-T--------TEEEEEETTTCCE
T ss_pred eCCCEEEEec-C--------CeEEEEECCCCcE
Confidence 5677776664 1 3599999987653
No 155
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=48.28 E-value=1.4e+02 Score=26.24 Aligned_cols=95 Identities=11% Similarity=0.092 Sum_probs=47.3
Q ss_pred cEEEEEECCCCcchhhhcccccccCCccccCceEE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHH
Q 015511 258 HGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFF 336 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~ 336 (405)
..+..||+.+.+-.. .+.... .....+.. -+|++++++..+ ..+.+|++...+-.....-.
T Consensus 227 g~i~~~d~~~~~~~~-----~~~~~~-~~i~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~---- 288 (425)
T 1r5m_A 227 GAIFVYQITEKTPTG-----KLIGHH-GPISVLEFNDTNKLLLSASDD--------GTLRIWHGGNGNSQNCFYGH---- 288 (425)
T ss_dssp GCEEEEETTCSSCSE-----EECCCS-SCEEEEEEETTTTEEEEEETT--------SCEEEECSSSBSCSEEECCC----
T ss_pred CeEEEEEcCCCceee-----eeccCC-CceEEEEECCCCCEEEEEcCC--------CEEEEEECCCCccceEecCC----
Confidence 479999998765211 111111 01112222 356666665432 45899988864322221100
Q ss_pred hccCCCCceeEE--eeCCCEEEEEeCCCCeEEEEECCCCcEEE
Q 015511 337 QGFGEFDDVFAS--SGTDDLIYIQSYGAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 337 ~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~ 377 (405)
...+.++ ...+ .+ +....+..+.+||+++++-..
T Consensus 289 -----~~~i~~~~~~~~~-~l-~~~~~d~~i~i~d~~~~~~~~ 324 (425)
T 1r5m_A 289 -----SQSIVSASWVGDD-KV-ISCSMDGSVRLWSLKQNTLLA 324 (425)
T ss_dssp -----SSCEEEEEEETTT-EE-EEEETTSEEEEEETTTTEEEE
T ss_pred -----CccEEEEEECCCC-EE-EEEeCCCcEEEEECCCCcEeE
Confidence 1122222 3334 33 333456789999998876443
No 156
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=47.79 E-value=1.4e+02 Score=26.09 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=28.0
Q ss_pred ceEEEEEEeCceeEEEeccChhHHhccCCCCce--eEEeeCCCEEEEEeCCCCeEEEEECCCCc
Q 015511 313 KGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDV--FASSGTDDLIYIQSYGAPSLLVYDMNLKQ 374 (405)
Q Consensus 313 ~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~ 374 (405)
..+.+|++...+-. ..+.. ....+ +++...+..++... .+..+.+||+++.+
T Consensus 314 ~~i~v~d~~~~~~~--~~~~~-------~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 314 STIAVYTVYSGEQI--TMLKG-------HYKTVDCCVFQSNFQELYSGS-RDCNILAWVPSLYE 367 (408)
T ss_dssp TEEEEEETTTCCEE--EEECC-------CSSCEEEEEEETTTTEEEEEE-TTSCEEEEEECC--
T ss_pred CEEEEEECcCCcce--eeecc-------CCCeEEEEEEcCCCCEEEEEC-CCCeEEEEeCCCCC
Confidence 45889988765422 22211 00122 23344566665543 56789999998874
No 157
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=46.92 E-value=8.4 Score=34.90 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=17.0
Q ss_pred ccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc
Q 015511 234 ESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS 269 (405)
Q Consensus 234 ~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~ 269 (405)
.+++.++.+|+-+.. ..+.++|..+.+
T Consensus 4 sP~v~~~~v~~gs~d---------g~v~a~d~~tG~ 30 (369)
T 2hz6_A 4 TVTLPETLLFVSTLD---------GSLHAVSKRTGS 30 (369)
T ss_dssp ----CTTEEEEEETT---------SEEEEEETTTCC
T ss_pred CCeeeCCEEEEEcCC---------CEEEEEECCCCC
Confidence 456678888876532 379999987655
No 158
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=46.91 E-value=96 Score=27.18 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=45.6
Q ss_pred CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC---CCCeEEEEEC
Q 015511 294 KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY---GAPSLLVYDM 370 (405)
Q Consensus 294 ~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~Yd~ 370 (405)
+|+|+++.... . ......+.+|++++++-.....++..... -.....-+++...++.+|+... ....+.+||+
T Consensus 77 ~g~L~v~D~g~-~--~~~~~~i~~~d~~tg~~~~~~~~~~~~~~-~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~ 152 (343)
T 2qe8_A 77 NGIVWMLDNGN-Q--SKSVPKLVAWDTLNNQLSRVIYLPPPITL-SNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDL 152 (343)
T ss_dssp SSEEEEEECHH-H--HTSCCEEEEEETTTTEEEEEEECCTTTSC-TTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEET
T ss_pred CCcEEEEcCCC-C--cCCCCeEEEEECCCCeEEEEEECChhhcc-cccccceEEEecCCCEEEEEcCccCCCCeEEEEEC
Confidence 58999987421 0 00024577787776665544455432111 0001122344445779999865 5678999999
Q ss_pred CCCc-EEEc
Q 015511 371 NLKQ-WRWS 378 (405)
Q Consensus 371 ~~~~-w~~l 378 (405)
++++ |+.+
T Consensus 153 ~~g~~~r~~ 161 (343)
T 2qe8_A 153 QTGLAARVL 161 (343)
T ss_dssp TTCCEEEEC
T ss_pred CCCCEEEEe
Confidence 8765 4445
No 159
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=46.73 E-value=1.5e+02 Score=26.11 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=34.5
Q ss_pred CcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeE--EeeCCCEEEEEeCCCC---eEEEEE
Q 015511 295 EKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFA--SSGTDDLIYIQSYGAP---SLLVYD 369 (405)
Q Consensus 295 G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~---~~~~Yd 369 (405)
+.+++.+..+ ..+.+|+++..+-.......... . +....+.+ +...+..+++....+. .+.+||
T Consensus 178 ~~~l~~~~~d--------g~v~iwd~~~~~~~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d 246 (416)
T 2pm9_A 178 AHVFASAGSS--------NFASIWDLKAKKEVIHLSYTSPN-S--GIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD 246 (416)
T ss_dssp TTEEEEESSS--------SCEEEEETTTTEEEEEECCCCCS-S--CCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEE
T ss_pred CcEEEEEcCC--------CCEEEEECCCCCcceEEeccccc-c--ccCCceEEEEECCCCCCEEEEEECCCCCceEEEEe
Confidence 5676666532 45999999876544333322100 0 00012222 3344433333333444 899999
Q ss_pred CCCC
Q 015511 370 MNLK 373 (405)
Q Consensus 370 ~~~~ 373 (405)
++++
T Consensus 247 ~~~~ 250 (416)
T 2pm9_A 247 LRNA 250 (416)
T ss_dssp TTST
T ss_pred CCCC
Confidence 9885
No 160
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=46.64 E-value=42 Score=32.46 Aligned_cols=110 Identities=12% Similarity=0.039 Sum_probs=60.8
Q ss_pred CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceE-EeCCcEEEEEccccccccCccceEEE
Q 015511 239 DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEKLVMVGGIGKQDRPDIIKGIGI 317 (405)
Q Consensus 239 ~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~L~~v~~~~~~~~~~~~~~~~v 317 (405)
++.+|+.... ...+..+|+.+.+-. ..++... .-..++ .-+|+..+++.. ...+.+
T Consensus 166 ~~~~~V~~~~--------~~~V~viD~~t~~v~-----~~i~~g~--~p~~v~~SpDGr~lyv~~~--------dg~V~v 222 (567)
T 1qks_A 166 ENLFSVTLRD--------AGQIALIDGSTYEIK-----TVLDTGY--AVHISRLSASGRYLFVIGR--------DGKVNM 222 (567)
T ss_dssp GGEEEEEETT--------TTEEEEEETTTCCEE-----EEEECSS--CEEEEEECTTSCEEEEEET--------TSEEEE
T ss_pred CceEEEEeCC--------CCeEEEEECCCCeEE-----EEEeCCC--CccceEECCCCCEEEEEcC--------CCeEEE
Confidence 4667776532 258999999887632 1122221 111333 335654444431 135888
Q ss_pred EEEeCceeEEEeccChhHHhccCCCCceeEEe----eCCCEEEEEeCCCCeEEEEECCCCcEEE
Q 015511 318 WVLNGKEWQEVARMPHKFFQGFGEFDDVFASS----GTDDLIYIQSYGAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 318 w~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~Yd~~~~~w~~ 377 (405)
|++...+-+.+.+++.. ....-+++. .+|+.+|+.++....+.++|..+.+-..
T Consensus 223 iD~~~~t~~~v~~i~~G------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~ 280 (567)
T 1qks_A 223 IDLWMKEPTTVAEIKIG------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK 280 (567)
T ss_dssp EETTSSSCCEEEEEECC------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE
T ss_pred EECCCCCCcEeEEEecC------CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE
Confidence 88752222344444321 111223444 3788999988777899999988875543
No 161
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=46.15 E-value=52 Score=28.10 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=39.6
Q ss_pred eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEee----CCCEEEEEeCCCCeEEEE
Q 015511 293 LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSG----TDDLIYIQSYGAPSLLVY 368 (405)
Q Consensus 293 ~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~Y 368 (405)
.+|++++.++.+ ..+.||+++......+..+. +....+.++.. .++.+.. ...+..+.+|
T Consensus 19 ~~g~~las~s~D--------~~v~iw~~~~~~~~~~~~l~-------gH~~~V~~v~~s~~~~g~~l~s-~s~D~~v~iW 82 (297)
T 2pm7_B 19 YYGKRMATCSSD--------KTIKIFEVEGETHKLIDTLT-------GHEGPVWRVDWAHPKFGTILAS-CSYDGKVMIW 82 (297)
T ss_dssp TTSSEEEEEETT--------SCEEEEEBCSSCBCCCEEEC-------CCSSCEEEEEECCGGGCSEEEE-EETTTEEEEE
T ss_pred CCCCEEEEEeCC--------CEEEEEecCCCCcEEEEEEc-------cccCCeEEEEecCCCcCCEEEE-EcCCCEEEEE
Confidence 356766666532 45999999764333222221 11123434322 2444444 3457899999
Q ss_pred ECCCCcEEEcc
Q 015511 369 DMNLKQWRWSH 379 (405)
Q Consensus 369 d~~~~~w~~l~ 379 (405)
|+++++|+.+.
T Consensus 83 d~~~~~~~~~~ 93 (297)
T 2pm7_B 83 KEENGRWSQIA 93 (297)
T ss_dssp EBSSSCBCCCE
T ss_pred EcCCCceEEEE
Confidence 99998776543
No 162
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=45.56 E-value=1.9e+02 Score=27.79 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=34.1
Q ss_pred EEEEEeCCCC--CcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc
Q 015511 207 SIHIYDSDTM--MWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS 269 (405)
Q Consensus 207 ~~~vy~s~~~--~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~ 269 (405)
.+..+|..++ .|+...............+++.+|.+|+-..... ......|.+||..+.+
T Consensus 126 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~---~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 126 HLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAE---LGVRGAVNAFDLKTGE 187 (571)
T ss_dssp EEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGG---GTCCCEEEEEETTTCC
T ss_pred EEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCc---cCCCCEEEEEECCCCc
Confidence 6777887555 5875322211111223456778999987653110 0012489999998654
No 163
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=44.91 E-value=56 Score=28.22 Aligned_cols=70 Identities=9% Similarity=0.090 Sum_probs=39.7
Q ss_pred CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEee----CCCEEEEEeCCCCeEEEEE
Q 015511 294 KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSG----TDDLIYIQSYGAPSLLVYD 369 (405)
Q Consensus 294 ~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~Yd 369 (405)
+|++++.++.+ ..+.+|++..+....+..+.. ....+.++.. .++.+... ..+..+.+||
T Consensus 24 ~g~~lasgs~D--------~~v~lwd~~~~~~~~~~~l~g-------H~~~V~~v~~~~~~~~~~l~s~-s~D~~v~iWd 87 (316)
T 3bg1_A 24 YGTRLATCSSD--------RSVKIFDVRNGGQILIADLRG-------HEGPVWQVAWAHPMYGNILASC-SYDRKVIIWR 87 (316)
T ss_dssp GGCEEEEEETT--------TEEEEEEEETTEEEEEEEEEC-------CSSCEEEEEECCGGGSSCEEEE-ETTSCEEEEC
T ss_pred CCCEEEEEeCC--------CeEEEEEecCCCcEEEEEEcC-------CCccEEEEEeCCCCCCCEEEEE-ECCCEEEEEE
Confidence 56666555432 469999998765444433321 1113333322 24444443 3577899999
Q ss_pred CCCCcEEEcc
Q 015511 370 MNLKQWRWSH 379 (405)
Q Consensus 370 ~~~~~w~~l~ 379 (405)
+++++|+.+.
T Consensus 88 ~~~~~~~~~~ 97 (316)
T 3bg1_A 88 EENGTWEKSH 97 (316)
T ss_dssp CSSSCCCEEE
T ss_pred CCCCcceEEE
Confidence 9988775543
No 164
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=43.77 E-value=40 Score=24.73 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=30.0
Q ss_pred ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEe
Q 015511 147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVK 193 (405)
Q Consensus 147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~ 193 (405)
-.++++||.|++|.....-. ...+.+.+..|...+.|.|+...
T Consensus 11 A~V~~~d~~~~~W~p~~~g~----~gvs~V~~~~d~~~~~yrI~~~~ 53 (115)
T 1egx_A 11 ATVMLYDDGNKRWLPAGTGP----QAFSRVQIYHNPTANSFRVVGRK 53 (115)
T ss_dssp EECBEECTTTSSCCBSSCSC----CCCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEcCCCCceeECCCCC----CCccEEEEEEeCCCCEEEEEEEE
Confidence 46788999999997543210 12345778888888889888764
No 165
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=43.37 E-value=1.7e+02 Score=25.75 Aligned_cols=66 Identities=12% Similarity=0.125 Sum_probs=34.2
Q ss_pred CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCC
Q 015511 294 KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLK 373 (405)
Q Consensus 294 ~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~ 373 (405)
+|++++.++.+ ..+.+|+++..+-. ..+.. ....-.-+++...+..+++....+..+.+||+++.
T Consensus 274 ~~~~l~s~~~d--------g~v~~wd~~~~~~~--~~~~~-----~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 274 DEHLLLSSGRD--------NTVLLWNPESAEQL--SQFPA-----RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp CSSCEEEEESS--------SEEEEECSSSCCEE--EEEEC-----SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CCCeEEEEeCC--------CCEEEeeCCCCccc--eeecC-----CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 56666666532 45999988765322 22210 00000112334445234444445678899998876
Q ss_pred c
Q 015511 374 Q 374 (405)
Q Consensus 374 ~ 374 (405)
+
T Consensus 339 ~ 339 (416)
T 2pm9_A 339 T 339 (416)
T ss_dssp C
T ss_pred C
Confidence 4
No 166
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=43.28 E-value=1.9e+02 Score=26.12 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=18.5
Q ss_pred eeCCCEEEEEeCCCCeEEEEECCCCcEE
Q 015511 349 SGTDDLIYIQSYGAPSLLVYDMNLKQWR 376 (405)
Q Consensus 349 ~~~~~~i~~~~~~~~~~~~Yd~~~~~w~ 376 (405)
...+..+++....+..+.+|++.++.+.
T Consensus 387 ~p~~~~~l~s~s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 387 NPNEPWIICSVSEDNIMQVWQMAENVYN 414 (430)
T ss_dssp CSSSTTEEEEEETTSEEEEEEECHHHHC
T ss_pred CCCCCCEEEEEECCCCEEEeEccccccc
Confidence 3445534444446778999999988765
No 167
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=42.83 E-value=1.6e+02 Score=25.24 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=33.0
Q ss_pred CcEEEEEccccccccCccceEEEEEEeCcee--EEEeccChhHHhccCCCCceeE--EeeCCCEEEEEeCCCCeEEEEEC
Q 015511 295 EKLVMVGGIGKQDRPDIIKGIGIWVLNGKEW--QEVARMPHKFFQGFGEFDDVFA--SSGTDDLIYIQSYGAPSLLVYDM 370 (405)
Q Consensus 295 G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W--~~v~~i~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~Yd~ 370 (405)
|++++++..+ ..+.+|+++..+- ..+..+.... ....+.+ +...++.+.... .+..+.+||+
T Consensus 299 ~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~ 364 (366)
T 3k26_A 299 QKMLALGNQV--------GKLYVWDLEVEDPHKAKCTTLTHHK-----CGAAIRQTSFSRDSSILIAVC-DDASIWRWDR 364 (366)
T ss_dssp SSEEEEECTT--------SCEEEEECCSSSGGGCEEEEECCTT-----CCSCEEEEEECTTSSEEEEEE-TTSEEEEEEC
T ss_pred CcEEEEEecC--------CcEEEEECCCCCCccccceEEcccc-----cCCceEEEEeCCCCCeEEEEe-CCCEEEEEEe
Confidence 7777776532 4599999986431 1222222100 0112333 334566655543 5678999998
Q ss_pred CC
Q 015511 371 NL 372 (405)
Q Consensus 371 ~~ 372 (405)
.+
T Consensus 365 ~~ 366 (366)
T 3k26_A 365 LR 366 (366)
T ss_dssp --
T ss_pred cC
Confidence 64
No 168
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=42.73 E-value=1.8e+02 Score=25.68 Aligned_cols=189 Identities=15% Similarity=0.103 Sum_probs=100.3
Q ss_pred ecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015511 133 SSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD 212 (405)
Q Consensus 133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~ 212 (405)
..+|.|+..+.. ...++.+++.++....+..... ....++.+|...+ .||+.... ...+.+++
T Consensus 82 ~~~~~ly~~D~~-~~~I~r~~~~g~~~~~~~~~~~-----~~p~glavd~~~g--~ly~~d~~---------~~~I~~~~ 144 (349)
T 3v64_C 82 HRRELVFWSDVT-LDRILRANLNGSNVEEVVSTGL-----ESPGGLAVDWVHD--KLYWTDSG---------TSRIEVAN 144 (349)
T ss_dssp TTTTEEEEEETT-TTEEEEEETTSCSCEEEECSSC-----SCCCEEEEETTTT--EEEEEETT---------TTEEEEEE
T ss_pred ccccEEEEEecc-CCceEEEecCCCCceEEEeCCC-----CCccEEEEecCCC--eEEEEcCC---------CCeEEEEc
Confidence 357888887753 4678889998876555432110 1124666665332 45655321 23677777
Q ss_pred CCCCCcccccccccccccCCCccEEE---CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc-C
Q 015511 213 SDTMMWVTSWKEVLTGWRAGDESIIC---DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC-G 288 (405)
Q Consensus 213 s~~~~W~~~~~~~~~~~~~~~~~v~~---~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~ 288 (405)
.....-+.... ... .....+.+ +|.|||.... ....|..+|+....-.. ++. ..... .
T Consensus 145 ~dG~~~~~l~~---~~l-~~P~~iavdp~~g~ly~td~~-------~~~~I~r~~~dG~~~~~-----~~~--~~~~~Pn 206 (349)
T 3v64_C 145 LDGAHRKVLLW---QSL-EKPRAIALHPMEGTIYWTDWG-------NTPRIEASSMDGSGRRI-----IAD--THLFWPN 206 (349)
T ss_dssp TTSCSCEEEEC---TTC-SCEEEEEEETTTTEEEEEECS-------SSCEEEEEETTSCSCEE-----SCC--SSCSCEE
T ss_pred CCCCceEEEEe---CCC-CCcceEEEecCcCeEEEeccC-------CCCEEEEEeCCCCCcEE-----EEE--CCCCCcc
Confidence 65432211110 011 11123333 6899998632 12589999987543211 111 11111 1
Q ss_pred ceEE--eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEE
Q 015511 289 RLMN--LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLL 366 (405)
Q Consensus 289 ~l~~--~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 366 (405)
.|+. .+|+||++... ...+..+.++...=..+.... + ..+.++...++.||+.......+.
T Consensus 207 Gla~d~~~~~lY~aD~~--------~~~I~~~~~dG~~~~~~~~~~------~---~~P~giav~~~~ly~td~~~~~V~ 269 (349)
T 3v64_C 207 GLTIDYAGRRMYWVDAK--------HHVIERANLDGSHRKAVISQG------L---PHPFAITVFEDSLYWTDWHTKSIN 269 (349)
T ss_dssp EEEEETTTTEEEEEETT--------TTEEEEEETTSCSCEEEECSS------C---SSEEEEEEETTEEEEEETTTTEEE
T ss_pred eEEEeCCCCEEEEEECC--------CCEEEEEeCCCCceEEEEeCC------C---CCceEEEEECCEEEEecCCCCeEE
Confidence 3444 36899988752 245777776643212221111 0 123444446778998877778899
Q ss_pred EEECCCC
Q 015511 367 VYDMNLK 373 (405)
Q Consensus 367 ~Yd~~~~ 373 (405)
.+|..++
T Consensus 270 ~~~~~~G 276 (349)
T 3v64_C 270 SANKFTG 276 (349)
T ss_dssp EEETTTC
T ss_pred EEEccCC
Confidence 9995544
No 169
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=42.55 E-value=1.1e+02 Score=30.43 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=46.9
Q ss_pred ceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEe--eC--CCEEEEEeCCCCeEEEEECCCCcEEEccCCCCCCCCc
Q 015511 313 KGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASS--GT--DDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTKRFP 388 (405)
Q Consensus 313 ~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~--~~--~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~~p~~~~~~ 388 (405)
..+.||++..+.+..+..+... ...+.++. .. ++.++... .++.+.+||++++++..+.....+.
T Consensus 31 g~I~vwd~~~~~~~~~~~l~~h-------~~~V~~l~~s~~~~~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~h~--- 99 (753)
T 3jro_A 31 KTIKIFEVEGETHKLIDTLTGH-------EGPVWRVDWAHPKFGTILASCS-YDGKVLIWKEENGRWSQIAVHAVHS--- 99 (753)
T ss_dssp TEEEEEEEETTEEEEEEEECCC-------SSCEEEEEECCTTSCSEEEEEE-TTSCEEEEEEETTEEEEEEEECCCS---
T ss_pred CcEEEEecCCCCCccceeccCC-------cCceEEEEecCCCCCCEEEEEe-CCCeEEEEECCCCcccccccccCCC---
Confidence 4599999998777776655421 11333332 23 55555544 5778999999999887765443322
Q ss_pred ccceeeeeecee
Q 015511 389 LQLFTGFCFEPR 400 (405)
Q Consensus 389 ~~~~~~~~~~p~ 400 (405)
....++.|.|.
T Consensus 100 -~~V~~v~~sp~ 110 (753)
T 3jro_A 100 -ASVNSVQWAPH 110 (753)
T ss_dssp -SCEEEEEECCG
T ss_pred -CCeEEEEECCC
Confidence 12456666664
No 170
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=42.51 E-value=1.7e+02 Score=25.45 Aligned_cols=186 Identities=15% Similarity=0.151 Sum_probs=95.6
Q ss_pred CceEEEEeCCCCceEEEEeCcccce--eecc-CCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEE
Q 015511 135 YGLVCFMDNDSRSELYVCNPISKSW--KKLE-EPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIY 211 (405)
Q Consensus 135 ~Gll~~~~~~~~~~~~v~NP~T~~~--~~lP-~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy 211 (405)
+|.|+..+.. ...++.+++.++.. ..+. .+ ....++++|...+ .||+.... ...+.++
T Consensus 46 ~~~lyw~D~~-~~~I~r~~~~g~~~~~~~~~~~l-------~~p~glavd~~~g--~ly~~d~~---------~~~I~~~ 106 (318)
T 3sov_A 46 HGLIYWSDVS-EEAIKRTEFNKTESVQNVVVSGL-------LSPDGLACDWLGE--KLYWTDSE---------TNRIEVS 106 (318)
T ss_dssp GTEEEEEETT-TTEEEEEETTSSSCCCEEEEECC-------SCCCEEEEETTTT--EEEEEETT---------TTEEEEE
T ss_pred CCEEEEEECC-CCcEEEEEccCCCceEEEEcCCC-------CCccEEEEEcCCC--eEEEEECC---------CCEEEEE
Confidence 5777776643 36777888776532 1111 11 0123566665322 45554321 2367788
Q ss_pred eCCCCCcccccccccccccCCCccEEE---CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc-
Q 015511 212 DSDTMMWVTSWKEVLTGWRAGDESIIC---DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC- 287 (405)
Q Consensus 212 ~s~~~~W~~~~~~~~~~~~~~~~~v~~---~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~- 287 (405)
+.....=+.... ........+.+ +|.|||.... ....|..+|+....-.. ++. .....
T Consensus 107 ~~dG~~~~~l~~----~~~~~P~giavdp~~g~ly~td~~-------~~~~I~r~~~dG~~~~~-----~~~--~~l~~P 168 (318)
T 3sov_A 107 NLDGSLRKVLFW----QELDQPRAIALDPSSGFMYWTDWG-------EVPKIERAGMDGSSRFI-----IIN--SEIYWP 168 (318)
T ss_dssp ETTSCSCEEEEC----SSCSSEEEEEEEGGGTEEEEEECS-------SSCEEEEEETTSCSCEE-----EEC--SSCSCE
T ss_pred ECCCCcEEEEEe----CCCCCccEEEEeCCCCEEEEEecC-------CCCEEEEEEcCCCCeEE-----EEE--CCCCCc
Confidence 764322111100 00111123444 5899998631 12579999986433111 111 11111
Q ss_pred CceEEe--CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeE
Q 015511 288 GRLMNL--KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSL 365 (405)
Q Consensus 288 ~~l~~~--~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 365 (405)
..|+.. +|+||++... ...+..+.++...=..+.. . . ...+.++...++.+|........+
T Consensus 169 nglavd~~~~~lY~aD~~--------~~~I~~~d~dG~~~~~~~~--~----~---~~~P~glav~~~~lywtd~~~~~V 231 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAK--------LNFIHKSNLDGTNRQAVVK--G----S---LPHPFALTLFEDILYWTDWSTHSI 231 (318)
T ss_dssp EEEEEETTTTEEEEEETT--------TTEEEEEETTSCSCEEEEC--S----C---CSCEEEEEEETTEEEEEETTTTEE
T ss_pred cEEEEeccCCEEEEEECC--------CCEEEEEcCCCCceEEEec--C----C---CCCceEEEEeCCEEEEEecCCCeE
Confidence 134443 6899998752 3457777776432222221 0 0 113445555677888887667899
Q ss_pred EEEECCCCc
Q 015511 366 LVYDMNLKQ 374 (405)
Q Consensus 366 ~~Yd~~~~~ 374 (405)
..+|+.+++
T Consensus 232 ~~~~~~~G~ 240 (318)
T 3sov_A 232 LACNKYTGE 240 (318)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCC
Confidence 999997664
No 171
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=40.31 E-value=1.8e+02 Score=25.04 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=35.6
Q ss_pred CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEE--eeCC-CEEEEEeCCCCeEEEEEC
Q 015511 294 KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFAS--SGTD-DLIYIQSYGAPSLLVYDM 370 (405)
Q Consensus 294 ~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~--~~~~-~~i~~~~~~~~~~~~Yd~ 370 (405)
+|++++.++.+ ..+.+|++....|+.+..+... ...+.++ ...+ +..++....+..+.+||+
T Consensus 164 ~~~~l~s~s~D--------~~i~iW~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 164 SEALLASSSYD--------DTVRIWKDYDDDWECVAVLNGH-------EGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp SSSEEEEEETT--------SCEEEEEEETTEEEEEEEECCC-------SSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEcCC--------CeEEEEECCCCCeeEEEEccCC-------CCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 46666655532 4599999988888776655310 1123232 2221 223333335667888887
Q ss_pred CCC
Q 015511 371 NLK 373 (405)
Q Consensus 371 ~~~ 373 (405)
+++
T Consensus 229 ~~~ 231 (330)
T 2hes_X 229 MGD 231 (330)
T ss_dssp EEE
T ss_pred cCC
Confidence 643
No 172
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=39.99 E-value=1.9e+02 Score=25.27 Aligned_cols=132 Identities=11% Similarity=0.036 Sum_probs=61.0
Q ss_pred EEEEEeCCCCCcccccccccccccCCCccEEE---CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCC
Q 015511 207 SIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC---DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPC 283 (405)
Q Consensus 207 ~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~---~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~ 283 (405)
.+.+|+..++....... ..........+.. ++...+.+.. ...+..+|+.+..... .....
T Consensus 97 ~i~iwd~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~--------d~~i~iwd~~~~~~~~------~~~~~ 160 (383)
T 3ei3_B 97 DIILWDYDVQNKTSFIQ--GMGPGDAITGMKFNQFNTNQLFVSSI--------RGATTLRDFSGSVIQV------FAKTD 160 (383)
T ss_dssp CEEEEETTSTTCEEEEC--CCSTTCBEEEEEEETTEEEEEEEEET--------TTEEEEEETTSCEEEE------EECCC
T ss_pred eEEEEeCCCcccceeee--cCCcCCceeEEEeCCCCCCEEEEEeC--------CCEEEEEECCCCceEE------EeccC
Confidence 78899988766543211 0011111122322 3344444432 2478999998755331 11111
Q ss_pred cc-c-cCceE-EeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeE--EeeCCCEEEEE
Q 015511 284 AL-T-CGRLM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFA--SSGTDDLIYIQ 358 (405)
Q Consensus 284 ~~-~-~~~l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~--~~~~~~~i~~~ 358 (405)
.. . ...+. .-+|++++++..+ ..+.+|++....-..+..- ...+.+ +...+..+++.
T Consensus 161 ~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~h----------~~~v~~~~~~~~~~~~l~s 222 (383)
T 3ei3_B 161 SWDYWYCCVDVSVSRQMLATGDST--------GRLLLLGLDGHEIFKEKLH----------KAKVTHAEFNPRCDWLMAT 222 (383)
T ss_dssp CSSCCEEEEEEETTTTEEEEEETT--------SEEEEEETTSCEEEEEECS----------SSCEEEEEECSSCTTEEEE
T ss_pred CCCCCeEEEEECCCCCEEEEECCC--------CCEEEEECCCCEEEEeccC----------CCcEEEEEECCCCCCEEEE
Confidence 10 0 11122 2356766665432 4699999854322221110 012222 23344423333
Q ss_pred eCCCCeEEEEECCC
Q 015511 359 SYGAPSLLVYDMNL 372 (405)
Q Consensus 359 ~~~~~~~~~Yd~~~ 372 (405)
...+..+.+||+++
T Consensus 223 ~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 223 SSVDATVKLWDLRN 236 (383)
T ss_dssp EETTSEEEEEEGGG
T ss_pred EeCCCEEEEEeCCC
Confidence 33566788888886
No 173
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=39.96 E-value=2.1e+02 Score=25.76 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=15.9
Q ss_pred eeCCCEEEEEeCCCCeEEEEECCC
Q 015511 349 SGTDDLIYIQSYGAPSLLVYDMNL 372 (405)
Q Consensus 349 ~~~~~~i~~~~~~~~~~~~Yd~~~ 372 (405)
...++.+++....+..+.+||+.+
T Consensus 330 sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 330 SPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp CSSCTTEEEEEETTSCCEEEEGGG
T ss_pred CCCCCCEEEEEeCCCcEEEEeCCC
Confidence 344555555555567888999877
No 174
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=39.55 E-value=2.1e+02 Score=25.75 Aligned_cols=193 Identities=9% Similarity=-0.003 Sum_probs=93.1
Q ss_pred ceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCC
Q 015511 136 GLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDT 215 (405)
Q Consensus 136 Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~ 215 (405)
.+|++... ..+..+++.++....+-.- .....++.+|+..+ +||+.... ...+..++...
T Consensus 84 ~~ll~~~~---~~I~~i~l~~~~~~~~~~~------~~~~~~l~~d~~~~--~lywsD~~---------~~~I~~~~~~g 143 (400)
T 3p5b_L 84 AYLFFTNR---HEVRKMTLDRSEYTSLIPN------LRNVVALDTEVASN--RIYWSDLS---------QRMICSTQLDR 143 (400)
T ss_dssp CEEEEEET---TEEEEECTTSCSCEEEECS------CSCEEEEEEETTTT--EEEEEETT---------TTEEEEEEC--
T ss_pred ceeEEecc---ceeEEEccCCcceeEeccc------cCcceEEeeeeccC--ceEEEecC---------CCeEEEEEccc
Confidence 34444432 6677778777766554221 11346777775322 56665421 12566666543
Q ss_pred CC-cccccccccccccCCCccEEE---CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc-Cce
Q 015511 216 MM-WVTSWKEVLTGWRAGDESIIC---DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC-GRL 290 (405)
Q Consensus 216 ~~-W~~~~~~~~~~~~~~~~~v~~---~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l 290 (405)
.. +..... ..........++.+ ++.|||.... ...|..+|+....-..+ +. ..... ..+
T Consensus 144 ~~~~~~~~~-~~~~~~~~p~glavD~~~~~lY~~d~~--------~~~I~~~~~~g~~~~~l-----~~--~~~~~P~~i 207 (400)
T 3p5b_L 144 AHGVSSYDT-VISRDIQAPDGLAVDWIHSNIYWTDSV--------LGTVSVADTKGVKRKTL-----FR--ENGSKPRAI 207 (400)
T ss_dssp ----CCCEE-EECSSCSCEEEEEEETTTTEEEEEETT--------TTEEEEECTTTCSEEEE-----EE--CSSCCEEEE
T ss_pred CCCCCcceE-EEeCCCCCcccEEEEecCCceEEEECC--------CCeEEEEeCCCCceEEE-----Ee--CCCCCcceE
Confidence 11 111111 01101111123333 7899998632 24799999876542211 11 11111 234
Q ss_pred EE--eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEE
Q 015511 291 MN--LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVY 368 (405)
Q Consensus 291 ~~--~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Y 368 (405)
++ .+|.||+..... ...+.+..++...=..+.. .. + ..+.-+++...++.||+.......+.++
T Consensus 208 avdp~~g~ly~td~~~-------~~~I~~~~~dG~~~~~~~~--~~----l-~~P~glavd~~~~~lY~aD~~~~~I~~~ 273 (400)
T 3p5b_L 208 VVDPVHGFMYWTDWGT-------PAKIKKGGLNGVDIYSLVT--EN----I-QWPNGITLDLLSGRLYWVDSKLHSISSI 273 (400)
T ss_dssp EEETTTTEEEEEECSS-------SCCEEEEETTSCSCEEEEC--SS----C-SCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEecccCeEEEEeCCC-------CCEEEEEeCCCCccEEEEE--CC----C-CceEEEEEEeCCCEEEEEECCCCEEEEE
Confidence 44 368888876311 1335555555322111110 00 0 0112234444678888887667788888
Q ss_pred ECCCCcEEEc
Q 015511 369 DMNLKQWRWS 378 (405)
Q Consensus 369 d~~~~~w~~l 378 (405)
|++...-+.+
T Consensus 274 d~dG~~~~~~ 283 (400)
T 3p5b_L 274 DVNGGNRKTI 283 (400)
T ss_dssp ETTSCCCEEE
T ss_pred eCCCCccEEE
Confidence 8876654444
No 175
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=39.45 E-value=1.6e+02 Score=24.16 Aligned_cols=186 Identities=11% Similarity=0.016 Sum_probs=89.6
Q ss_pred CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCC-CCccccccc
Q 015511 146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDT-MMWVTSWKE 224 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~-~~W~~~~~~ 224 (405)
...++++|+.+++...+.... . ....+..+|.. .+ +++ +. ...+.+|+..+ +........
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~----~--~v~~~~~spdg-~~-l~~-~~----------~~~i~~~d~~~~~~~~~~~~~ 81 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTP----E--LFEAPNWSPDG-KY-LLL-NS----------EGLLYRLSLAGDPSPEKVDTG 81 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEES----S--CCEEEEECTTS-SE-EEE-EE----------TTEEEEEESSSCCSCEECCCT
T ss_pred ceeEEEEeCCCCceeeeccCC----c--ceEeeEECCCC-CE-EEE-Ec----------CCeEEEEeCCCCCCceEeccc
Confidence 478999999999887664321 1 12344455543 23 222 22 12788999877 665443211
Q ss_pred ccccccCCCccEEE-CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceE-EeCCcEEE-EE
Q 015511 225 VLTGWRAGDESIIC-DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEKLVM-VG 301 (405)
Q Consensus 225 ~~~~~~~~~~~v~~-~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~L~~-v~ 301 (405)
. . ........+. +|...+.+... ......|..+|..+..... +..... ...+. .-+|+.++ ..
T Consensus 82 ~-~-~~~~~~~~~spdg~~l~~~~~~----~~~~~~l~~~~~~~~~~~~------~~~~~~--~~~~~~spdg~~l~~~~ 147 (297)
T 2ojh_A 82 F-A-TICNNDHGISPDGALYAISDKV----EFGKSAIYLLPSTGGTPRL------MTKNLP--SYWHGWSPDGKSFTYCG 147 (297)
T ss_dssp T-C-CCBCSCCEECTTSSEEEEEECT----TTSSCEEEEEETTCCCCEE------CCSSSS--EEEEEECTTSSEEEEEE
T ss_pred c-c-cccccceEECCCCCEEEEEEeC----CCCcceEEEEECCCCceEE------eecCCC--ccceEECCCCCEEEEEE
Confidence 0 0 0011112222 55544444311 1123578888887665321 111111 11122 22566444 33
Q ss_pred ccccccccCccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC--CCCeEEEEECCCCcEEE
Q 015511 302 GIGKQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY--GAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 302 ~~~~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~Yd~~~~~w~~ 377 (405)
.. ...+.+|.++. .....+...+.. ...+.....++.+++... ....++.+++.++....
T Consensus 148 ~~--------~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~ 211 (297)
T 2ojh_A 148 IR--------DQVFDIYSMDIDSGVETRLTHGEGR--------NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVER 211 (297)
T ss_dssp EE--------TTEEEEEEEETTTCCEEECCCSSSC--------EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEE
T ss_pred CC--------CCceEEEEEECCCCcceEcccCCCc--------cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEE
Confidence 32 13478998873 333332221110 011233456776666543 33466666767777776
Q ss_pred ccC
Q 015511 378 SHK 380 (405)
Q Consensus 378 l~~ 380 (405)
+..
T Consensus 212 ~~~ 214 (297)
T 2ojh_A 212 ITD 214 (297)
T ss_dssp CCC
T ss_pred Eec
Confidence 653
No 176
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=39.36 E-value=66 Score=25.33 Aligned_cols=40 Identities=15% Similarity=0.332 Sum_probs=29.2
Q ss_pred ceEEEEeCccc-ceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEe
Q 015511 147 SELYVCNPISK-SWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVK 193 (405)
Q Consensus 147 ~~~~v~NP~T~-~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~ 193 (405)
-.|+++||.|+ .|+..-.. ...+.+..|...+.|+|+.+.
T Consensus 16 A~Vm~~D~~tk~~WvP~g~~-------~~~V~i~~d~~rnsyRIvg~~ 56 (168)
T 1i2h_A 16 AHVFQIDPNTKKNWVPTSKH-------AVTVSYFYDSTRNVYRIISLD 56 (168)
T ss_dssp EEEEEECTTSSCCSEESCSS-------CEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEECCCCCCceeecCCC-------CeEEEEEEcCCCCEEEEEEcc
Confidence 46899999997 99875432 124566678888889988765
No 177
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=39.25 E-value=1.8e+02 Score=24.85 Aligned_cols=17 Identities=0% Similarity=-0.121 Sum_probs=13.2
Q ss_pred CceEEEEeCcccceeec
Q 015511 146 RSELYVCNPISKSWKKL 162 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~l 162 (405)
.+.+.+||..+++....
T Consensus 95 dg~i~iwd~~~~~~~~~ 111 (369)
T 3zwl_B 95 DYSIKLWDVSNGQCVAT 111 (369)
T ss_dssp TTEEEEEETTTCCEEEE
T ss_pred CCeEEEEECCCCcEEEE
Confidence 47899999988876554
No 178
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=39.04 E-value=3.7e+02 Score=28.30 Aligned_cols=199 Identities=9% Similarity=0.021 Sum_probs=90.3
Q ss_pred ecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015511 133 SSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD 212 (405)
Q Consensus 133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~ 212 (405)
+.+|-.++.+. ..+.+.|||..|++....-.. + ......+.+.+..+.. +++.++. ...+.+||
T Consensus 666 s~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~---~--~~~v~~~~~~~~~~~~-~l~sg~~---------d~~v~vwd 729 (1249)
T 3sfz_A 666 SSDDSYIATCS-ADKKVKIWDSATGKLVHTYDE---H--SEQVNCCHFTNKSNHL-LLATGSN---------DFFLKLWD 729 (1249)
T ss_dssp CTTSSEEEEEE-TTSEEEEEETTTCCEEEEEEC---C--SSCEEEEEECSSSSCC-EEEEEET---------TSCEEEEE
T ss_pred ecCCCEEEEEe-CCCeEEEEECCCCceEEEEcC---C--CCcEEEEEEecCCCce-EEEEEeC---------CCeEEEEE
Confidence 33453333332 247899999999876543211 1 1122344454543333 3443432 13688898
Q ss_pred CCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhccccc----ccC-Ccc
Q 015511 213 SDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFI----PVP-CAL 285 (405)
Q Consensus 213 s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~----~~p-~~~ 285 (405)
..++.-...- .........+.+ +|...+.+... ..+..+|+.+..-......... ..+ ...
T Consensus 730 ~~~~~~~~~~----~~h~~~v~~~~~sp~~~~l~s~s~d--------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1249)
T 3sfz_A 730 LNQKECRNTM----FGHTNSVNHCRFSPDDELLASCSAD--------GTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797 (1249)
T ss_dssp TTSSSEEEEE----CCCSSCEEEEEECSSTTEEEEEESS--------SEEEEEEGGGTEEEEEEECCCCC--------CC
T ss_pred CCCcchhhee----cCCCCCEEEEEEecCCCEEEEEECC--------CeEEEEeCCCCcccceecccccccccCCccccc
Confidence 8766532211 111111112222 44444444322 3688888876542110000000 000 000
Q ss_pred ---ccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCC
Q 015511 286 ---TCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGA 362 (405)
Q Consensus 286 ---~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 362 (405)
...-...-+|+..+++.. ..+.+|++.............. ..-..+.+...+..+... ..+
T Consensus 798 ~~~v~~~~~s~dg~~l~~~~~---------~~v~~~d~~~~~~~~~~~~~~~------~~v~~~~~sp~~~~l~~~-~~d 861 (1249)
T 3sfz_A 798 EVIVKCCSWSADGDKIIVAAK---------NKVLLFDIHTSGLLAEIHTGHH------STIQYCDFSPYDHLAVIA-LSQ 861 (1249)
T ss_dssp CCCBCCCCBCTTSSEEEEEET---------TEEEEEETTTCCEEEEEECSSS------SCCCEEEECSSTTEEEEE-CSS
T ss_pred cceEEEEEECCCCCEEEEEcC---------CcEEEEEecCCCceeEEcCCCC------CceEEEEEcCCCCEEEEE-eCC
Confidence 011112345676666541 3588998876554332221110 000122334456665554 346
Q ss_pred CeEEEEECCCCcE
Q 015511 363 PSLLVYDMNLKQW 375 (405)
Q Consensus 363 ~~~~~Yd~~~~~w 375 (405)
..+.+||+++++-
T Consensus 862 g~v~vwd~~~~~~ 874 (1249)
T 3sfz_A 862 YCVELWNIDSRLK 874 (1249)
T ss_dssp SCEEEEETTTTEE
T ss_pred CeEEEEEcCCCce
Confidence 7889999988754
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=38.62 E-value=1.9e+02 Score=24.89 Aligned_cols=194 Identities=13% Similarity=0.094 Sum_probs=91.6
Q ss_pred ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCC-ccc-cccc
Q 015511 147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMM-WVT-SWKE 224 (405)
Q Consensus 147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~-W~~-~~~~ 224 (405)
..++++|+.|++....-.. . ......++.+++..+ +++.... ...+.+|+..... ... ....
T Consensus 69 ~~i~~~d~~~g~~~~~~~~--~--~~~~p~gia~d~~g~---l~v~d~~---------~~~v~~~~~~g~~~~~~~~~~~ 132 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGK--N--LFYLPHGLSIDTDGN---YWVTDVA---------LHQVFKLDPHSKEGPLLILGRS 132 (329)
T ss_dssp CCEEEECTTTCCEEEEECT--T--TCSSEEEEEECTTSC---EEEEETT---------TTEEEEECTTCSSCCSEEESBT
T ss_pred CcEEEEECCCCeEEeccCC--C--ccCCceEEEECCCCC---EEEEECC---------CCEEEEEeCCCCeEEEEEeccc
Confidence 4689999998887543211 0 111234666666543 5554421 2368888875431 111 1000
Q ss_pred ccc----cccCCCccEEE---CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhccccc--ccCCcccc-CceEEe-
Q 015511 225 VLT----GWRAGDESIIC---DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFI--PVPCALTC-GRLMNL- 293 (405)
Q Consensus 225 ~~~----~~~~~~~~v~~---~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~--~~p~~~~~-~~l~~~- 293 (405)
... ........+.+ +|.+|+.... ....|..||........+-..... ..+..... ..++..
T Consensus 133 ~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~-------~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~ 205 (329)
T 3fvz_A 133 MQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY-------CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVP 205 (329)
T ss_dssp TBCCCSTTCCSSEEEEEECTTTCCEEEEECS-------SCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEET
T ss_pred CCCCCCccccCCCcEEEEeCCCCeEEEEeCC-------CCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEEC
Confidence 000 00111123444 6889988631 125899999654332110000000 00111111 124433
Q ss_pred C-CcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEe-------CCCCeE
Q 015511 294 K-EKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQS-------YGAPSL 365 (405)
Q Consensus 294 ~-G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------~~~~~~ 365 (405)
+ |.||+.... ..++.+|.+++++.......+. .+ ..+.++....+.+|... .....+
T Consensus 206 ~~g~l~v~d~~--------~~~I~~~~~~~G~~~~~~~~~~-----~~--~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v 270 (329)
T 3fvz_A 206 HLDQLCVADRE--------NGRIQCFKTDTKEFVREIKHAS-----FG--RNVFAISYIPGFLFAVNGKPYFGDQEPVQG 270 (329)
T ss_dssp TTTEEEEEETT--------TTEEEEEETTTCCEEEEECCTT-----TT--TCEEEEEEETTEEEEEECCCCTTCSCCCCE
T ss_pred CCCEEEEEECC--------CCEEEEEECCCCcEEEEEeccc-----cC--CCcceeeecCCEEEEeCCCEEeccCCCcEE
Confidence 4 889988753 3568999888665544332221 00 01222211114444432 234589
Q ss_pred EEEECCCCcEEEc
Q 015511 366 LVYDMNLKQWRWS 378 (405)
Q Consensus 366 ~~Yd~~~~~w~~l 378 (405)
.+||+.+++....
T Consensus 271 ~~~~~~~g~~~~~ 283 (329)
T 3fvz_A 271 FVMNFSSGEIIDV 283 (329)
T ss_dssp EEEETTTCCEEEE
T ss_pred EEEEcCCCeEEEE
Confidence 9999888876553
No 180
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=38.30 E-value=1.9e+02 Score=24.69 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=0.0
Q ss_pred CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEE
Q 015511 239 DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIW 318 (405)
Q Consensus 239 ~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw 318 (405)
+|.+|+..... ..|..||+.... ...+..+ .....-.+..+|+||+... ......+..+
T Consensus 42 ~g~lyv~d~~~--------~~I~~~d~~g~~------~~~~~~~-~~p~gia~~~dG~l~vad~------~~~~~~v~~~ 100 (306)
T 2p4o_A 42 DGTIFVTNHEV--------GEIVSITPDGNQ------QIHATVE-GKVSGLAFTSNGDLVATGW------NADSIPVVSL 100 (306)
T ss_dssp TSCEEEEETTT--------TEEEEECTTCCE------EEEEECS-SEEEEEEECTTSCEEEEEE------CTTSCEEEEE
T ss_pred CCCEEEEeCCC--------CeEEEECCCCce------EEEEeCC-CCceeEEEcCCCcEEEEec------cCCcceEEEE
Q ss_pred EEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCC
Q 015511 319 VLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLK 373 (405)
Q Consensus 319 ~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~ 373 (405)
...+++.+.+..++...+. .-.+. ..++.+|+.......++++|+.++
T Consensus 101 d~~~g~~~~~~~~~~~~~~------~g~~~-~~~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 101 VKSDGTVETLLTLPDAIFL------NGITP-LSDTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp ECTTSCEEEEEECTTCSCE------EEEEE-SSSSEEEEEETTTTEEEEEETTTT
T ss_pred cCCCCeEEEEEeCCCcccc------Ccccc-cCCCcEEEEECCCCeEEEEeCCCC
No 181
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=38.11 E-value=1.9e+02 Score=24.68 Aligned_cols=53 Identities=11% Similarity=0.170 Sum_probs=29.4
Q ss_pred ceEEEEEEeC-ceeEEEeccChhHHhccCCCCceeEE--eeCC---CEEEEEeCCCCeEEEEECCC
Q 015511 313 KGIGIWVLNG-KEWQEVARMPHKFFQGFGEFDDVFAS--SGTD---DLIYIQSYGAPSLLVYDMNL 372 (405)
Q Consensus 313 ~~~~vw~l~~-~~W~~v~~i~~~~~~~~~~~~~~~~~--~~~~---~~i~~~~~~~~~~~~Yd~~~ 372 (405)
..+.+|+++. ..|..+..+... ...+.++ ...+ +..++....+..+.+||+++
T Consensus 189 ~~v~lWd~~~~~~~~~~~~l~~h-------~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 189 NLIKLWKEEEDGQWKEEQKLEAH-------SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp SBCCEEEECTTSCEEEEECCBCC-------SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred CeEEEEEeCCCCccceeeecccC-------CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 4589999974 568776655310 1123333 2222 13333334567888888876
No 182
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=37.58 E-value=3e+02 Score=26.78 Aligned_cols=100 Identities=10% Similarity=0.062 Sum_probs=46.6
Q ss_pred CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccc
Q 015511 146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEV 225 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~ 225 (405)
++.+.+||...+.-..+......+. .....+.+.+....-.++. ++. ...+.+||..++.-...
T Consensus 493 D~~i~iwd~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s-~s~---------d~~v~vwd~~~~~~~~~---- 556 (694)
T 3dm0_A 493 DRTIKLWNTLGECKYTISEGGEGHR--DWVSCVRFSPNTLQPTIVS-ASW---------DKTVKVWNLSNCKLRST---- 556 (694)
T ss_dssp TSCEEEECTTSCEEEEECSSTTSCS--SCEEEEEECSCSSSCEEEE-EET---------TSCEEEEETTTCCEEEE----
T ss_pred CCEEEEEECCCCcceeeccCCCCCC--CcEEEEEEeCCCCcceEEE-EeC---------CCeEEEEECCCCcEEEE----
Confidence 4678889976654444432211111 1123444555432223333 321 13788998866543211
Q ss_pred cccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCc
Q 015511 226 LTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRS 269 (405)
Q Consensus 226 ~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~ 269 (405)
..........+.+ +|.+.+.+... ..|..+|+.+.+
T Consensus 557 ~~~h~~~v~~v~~spdg~~l~sg~~D--------g~i~iwd~~~~~ 594 (694)
T 3dm0_A 557 LAGHTGYVSTVAVSPDGSLCASGGKD--------GVVLLWDLAEGK 594 (694)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETT--------SBCEEEETTTTE
T ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCC--------CeEEEEECCCCc
Confidence 1111111122223 55555554322 368889988765
No 183
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=37.32 E-value=2.2e+02 Score=25.22 Aligned_cols=99 Identities=10% Similarity=0.169 Sum_probs=45.9
Q ss_pred cEEEEEECCCCcchhhhcccccccCCccccCceEEe--CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhH
Q 015511 258 HGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNL--KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKF 335 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~--~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~ 335 (405)
..+..+|+.+.+-.. .+..... ...+... +|++++.++.+ ..+.+|++....-... +....
T Consensus 187 ~~v~iwd~~~~~~~~-----~~~~~~~--v~~~~~~~~~~~~l~~~s~d--------~~v~iwd~~~~~~~~~--~~~~~ 249 (393)
T 1erj_A 187 RTVRIWDLRTGQCSL-----TLSIEDG--VTTVAVSPGDGKYIAAGSLD--------RAVRVWDSETGFLVER--LDSEN 249 (393)
T ss_dssp SEEEEEETTTTEEEE-----EEECSSC--EEEEEECSTTCCEEEEEETT--------SCEEEEETTTCCEEEE--EC---
T ss_pred CcEEEEECCCCeeEE-----EEEcCCC--cEEEEEECCCCCEEEEEcCC--------CcEEEEECCCCcEEEe--ecccc
Confidence 478889998766321 1111111 1112222 57777776532 4599998876543222 21111
Q ss_pred HhccCCCCceeEE--eeCCCEEEEEeCCCCeEEEEECCCCc
Q 015511 336 FQGFGEFDDVFAS--SGTDDLIYIQSYGAPSLLVYDMNLKQ 374 (405)
Q Consensus 336 ~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~Yd~~~~~ 374 (405)
....+....+.++ ...++.++.. ..+..+.+||+++..
T Consensus 250 ~~~~~h~~~v~~v~~~~~g~~l~s~-s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 250 ESGTGHKDSVYSVVFTRDGQSVVSG-SLDRSVKLWNLQNAN 289 (393)
T ss_dssp ---CCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEEC----
T ss_pred cCCCCCCCCEEEEEECCCCCEEEEE-eCCCEEEEEECCCCC
Confidence 0001111223333 3455555543 356789999987643
No 184
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=37.23 E-value=3.1e+02 Score=26.85 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=74.2
Q ss_pred eEEEEEeCCCC--CcccccccccccccCCCccE-EECcEEEeeEEecCCCCCCCccEEEEEECCCCc---chhhhccccc
Q 015511 206 LSIHIYDSDTM--MWVTSWKEVLTGWRAGDESI-ICDGVLYFLIYATGGGAPENRHGLISFNLSSRS---SHALLIKSFI 279 (405)
Q Consensus 206 ~~~~vy~s~~~--~W~~~~~~~~~~~~~~~~~v-~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~---w~~~~~~~~~ 279 (405)
..+++++..++ .|+....+ .......+ ..++.+|++.... .....|+.+|+.+.. |+. ++
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~----~~~~~~~~~~~g~~l~~~t~~~-----~~~~~l~~~d~~~~~~~~~~~-----l~ 324 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGD----LDADVSLVDNKGSTLYLLTNRD-----APNRRLVTVDAANPGPAHWRD-----LI 324 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECS----SSSCEEEEEEETTEEEEEECTT-----CTTCEEEEEETTSCCGGGCEE-----EE
T ss_pred cEEEEEECCCCCCceEEEeCC----CCceEEEEeccCCEEEEEECCC-----CCCCEEEEEeCCCCCccccEE-----Ee
Confidence 37788887554 56554321 11111123 2378899887432 124589999998743 542 22
Q ss_pred ccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEE--eeCCCEEEE
Q 015511 280 PVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFAS--SGTDDLIYI 357 (405)
Q Consensus 280 ~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~--~~~~~~i~~ 357 (405)
+-.... . .+...++.|++..... ....+.+|.++......+ .+|..- .+.++ ...++.+++
T Consensus 325 ~~~~~~-~-~~s~~g~~lv~~~~~~------g~~~l~~~d~~g~~~~~l-~~p~~~--------~~~~~~~~~d~~~l~~ 387 (693)
T 3iuj_A 325 PERQQV-L-TVHSGSGYLFAEYMVD------ATARVEQFDYEGKRVREV-ALPGLG--------SVSGFNGKHDDPALYF 387 (693)
T ss_dssp CCCSSC-E-EEEEETTEEEEEEEET------TEEEEEEECTTSCEEEEE-CCSSSS--------EEEECCCCTTCSCEEE
T ss_pred cCCCCE-E-EEEEECCEEEEEEEEC------CeeEEEEEECCCCeeEEe-ecCCCc--------eEEeeecCCCCCEEEE
Confidence 222211 1 2233345565554321 134567776664433332 233210 11122 234566665
Q ss_pred EeC---CCCeEEEEECCCCcEEEccCC
Q 015511 358 QSY---GAPSLLVYDMNLKQWRWSHKC 381 (405)
Q Consensus 358 ~~~---~~~~~~~Yd~~~~~w~~l~~~ 381 (405)
... ....++.||+++++.+.+...
T Consensus 388 ~~ss~~tP~~l~~~d~~~g~~~~l~~~ 414 (693)
T 3iuj_A 388 GFENYAQPPTLYRFEPKSGAISLYRAS 414 (693)
T ss_dssp EEECSSSCCEEEEECTTTCCEEEEECC
T ss_pred EecCCCCCCEEEEEECCCCeEEEEEeC
Confidence 432 346899999999998887643
No 185
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=35.24 E-value=2.1e+02 Score=24.37 Aligned_cols=93 Identities=9% Similarity=0.098 Sum_probs=45.4
Q ss_pred cEEEEEECCCCcchhhhcccccccCCccccCceEEe----CCcEEEEEccccccccCccceEEEEEEeCce----eEEEe
Q 015511 258 HGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNL----KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKE----WQEVA 329 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~----~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~----W~~v~ 329 (405)
..+..||+.+.+-.. ...... ....+... +|.+++++..+ ..+.+|++...+ ....
T Consensus 190 ~~i~i~d~~~~~~~~-----~~~~~~--~v~~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~- 253 (357)
T 3i2n_A 190 GDIKLFDLRNMALRW-----ETNIKN--GVCSLEFDRKDISMNKLVATSLE--------GKFHVFDMRTQHPTKGFASV- 253 (357)
T ss_dssp SEEEEEETTTTEEEE-----EEECSS--CEEEEEESCSSSSCCEEEEEEST--------TEEEEEEEEEEETTTEEEEE-
T ss_pred CeEEEEECccCceee-----ecCCCC--ceEEEEcCCCCCCCCEEEEECCC--------CeEEEEeCcCCCcccceeee-
Confidence 479999998766210 111111 11122222 56666666432 458999988531 2111
Q ss_pred ccChhHHhccCCCCceeEE--eeCCCEEEEEeCCCCeEEEEECCCC
Q 015511 330 RMPHKFFQGFGEFDDVFAS--SGTDDLIYIQSYGAPSLLVYDMNLK 373 (405)
Q Consensus 330 ~i~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~Yd~~~~ 373 (405)
.+. +....+.++ ...+..+++....+..+.+||++++
T Consensus 254 ~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 254 SEK-------AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEE-------CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred ccC-------CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 000 001122222 3344434554445678888998764
No 186
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=34.96 E-value=2.9e+02 Score=25.89 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=33.2
Q ss_pred CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCcee--EEeeCCCEEEEEeCCCCeEEEEECC
Q 015511 294 KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVF--ASSGTDDLIYIQSYGAPSLLVYDMN 371 (405)
Q Consensus 294 ~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~Yd~~ 371 (405)
+|+++++++.+ ..+.+|+++... ..+..+.. . ...+. ++...+. + +....+..+.+||++
T Consensus 552 ~~~~l~~~~~d--------g~i~iw~~~~~~-~~~~~~~~-----h--~~~v~~l~~s~~~~-l-~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 552 EEDLVATGSLD--------TNIFIYSVKRPM-KIIKALNA-----H--KDGVNNLLWETPST-L-VSSGADACIKRWNVV 613 (615)
T ss_dssp SCCEEEEEETT--------SCEEEEESSCTT-CCEEETTS-----S--TTCEEEEEEEETTE-E-EEEETTSCEEEEEEC
T ss_pred CCCEEEEEcCC--------CcEEEEECCCCc-eechhhhc-----C--ccceEEEEEcCCCC-e-EEecCCceEEEEeee
Confidence 67777776532 459999998652 11222210 0 11232 3345565 4 333457789999987
Q ss_pred CC
Q 015511 372 LK 373 (405)
Q Consensus 372 ~~ 373 (405)
++
T Consensus 614 ~~ 615 (615)
T 1pgu_A 614 LE 615 (615)
T ss_dssp --
T ss_pred cC
Confidence 63
No 187
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=34.77 E-value=19 Score=21.30 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=13.2
Q ss_pred CCCCHHHHHHHHhcCC
Q 015511 43 LILPDDLLERILAYLP 58 (405)
Q Consensus 43 ~~LP~dll~~Il~~Lp 58 (405)
..||.|+.++||+.-.
T Consensus 22 ~~LP~dIQ~Ells~~~ 37 (48)
T 2kwv_A 22 KQLPADIQEEILSGKS 37 (48)
T ss_dssp TTSCHHHHHHHTTCCC
T ss_pred HHCcHHHHHHHHhcch
Confidence 4799999999998654
No 188
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=34.29 E-value=3.2e+02 Score=26.19 Aligned_cols=192 Identities=10% Similarity=-0.006 Sum_probs=93.0
Q ss_pred ceEEEEeCcc------cceeecc-CCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCC-CCCc
Q 015511 147 SELYVCNPIS------KSWKKLE-EPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSD-TMMW 218 (405)
Q Consensus 147 ~~~~v~NP~T------~~~~~lP-~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~-~~~W 218 (405)
..++++|..+ ++...|. .-. . .......+|+ +++ |+...... .. .......+.+++.. ++.+
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~----~--~~~~~~~SpD-G~~-la~~~~~~-~~-~~~~~~~i~~~d~~~~g~~ 230 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAH----R--FVTGPRLSPD-GRQ-AVWLAWDH-PR-MPWEGTELKTARVTEDGRF 230 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCS----S--EECCCEECTT-SSE-EEEEEECT-TC-CTTTCEEEEEEEECTTSCE
T ss_pred eEEEEEECCCCccccCCceeEEEecCC----C--cccCceECCC-CCE-EEEEECCC-CC-CCCCCcEEEEEEECCCCcc
Confidence 5799999998 7777665 211 1 1122233443 233 33333211 10 00012478889987 5643
Q ss_pred ccccccccccccCCC-ccEEE-CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccc-------cCc
Q 015511 219 VTSWKEVLTGWRAGD-ESIIC-DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALT-------CGR 289 (405)
Q Consensus 219 ~~~~~~~~~~~~~~~-~~v~~-~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~-------~~~ 289 (405)
.... .+........ .+.+. +|.+|+..... ....|..+|+.+.++..+ ........ ...
T Consensus 231 ~~~~-~l~~~~~~~~~~~~~spdg~l~~~~~~~------~~~~l~~~~~~~~~~~~l-----~~~~~~~~~p~w~~~~~~ 298 (662)
T 3azo_A 231 ADTR-TLLGGPEEAIAQAEWAPDGSLIVATDRT------GWWNLHRVDPATGAATQL-----CRREEEFAGPLWTPGMRW 298 (662)
T ss_dssp EEEE-EEEEETTBCEEEEEECTTSCEEEEECTT------SSCEEEEECTTTCCEEES-----SCCSSBSSCCCCSTTCCS
T ss_pred cccE-EeCCCCCceEcceEECCCCeEEEEECCC------CCeEEEEEECCCCceeec-----ccccccccCccccccCce
Confidence 2221 1111111111 12222 78888776422 124799999977776532 22111110 112
Q ss_pred eEEe-CCcEEEEEccccccccCccceEEEEEEe--CceeEEEeccChhHHhccCCCCceeEE-eeCCCEEEEEe-CC--C
Q 015511 290 LMNL-KEKLVMVGGIGKQDRPDIIKGIGIWVLN--GKEWQEVARMPHKFFQGFGEFDDVFAS-SGTDDLIYIQS-YG--A 362 (405)
Q Consensus 290 l~~~-~G~L~~v~~~~~~~~~~~~~~~~vw~l~--~~~W~~v~~i~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~--~ 362 (405)
+... +|+|++.... ....+|.++ .++... +... ...+..+ ...++.+++.. .. .
T Consensus 299 ~~~~~~~~~~~~~~~---------~~~~l~~~d~~~~~~~~---l~~~-------~~~~~~~~s~~~~~~~~~~~~~~~~ 359 (662)
T 3azo_A 299 FAPLANGLIAVVHGK---------GAAVLGILDPESGELVD---AAGP-------WTEWAATLTVSGTRAVGVAASPRTA 359 (662)
T ss_dssp EEECTTSCEEEEEBS---------SSCEEEEEETTTTEEEE---CCSS-------CCEEEEEEEEETTEEEEEEEETTEE
T ss_pred EeEeCCCEEEEEEEc---------CccEEEEEECCCCcEEE---ecCC-------CCeEEEEEecCCCEEEEEEcCCCCC
Confidence 3333 6787776642 236788776 345433 2211 0012222 33455555443 22 2
Q ss_pred CeEEEEECCCCcEEEcc
Q 015511 363 PSLLVYDMNLKQWRWSH 379 (405)
Q Consensus 363 ~~~~~Yd~~~~~w~~l~ 379 (405)
..++.+|+++++.+.+.
T Consensus 360 ~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 360 YEVVELDTVTGRARTIG 376 (662)
T ss_dssp EEEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCCceEEee
Confidence 36888899999888774
No 189
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=33.89 E-value=3.4e+02 Score=26.37 Aligned_cols=96 Identities=10% Similarity=0.008 Sum_probs=49.5
Q ss_pred ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccccc
Q 015511 147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVL 226 (405)
Q Consensus 147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~ 226 (405)
..+...+..+..-..+-+.+.. ....++.+|+..+ +||+.... ...+..++...........
T Consensus 15 ~~I~~i~l~~~~~~~~~~~~~~----~~~~~l~~d~~~~--~lywtD~~---------~~~I~r~~~~g~~~~~v~~--- 76 (628)
T 4a0p_A 15 ADIRRISLETNNNNVAIPLTGV----KEASALDFDVTDN--RIYWTDIS---------LKTISRAFMNGSALEHVVE--- 76 (628)
T ss_dssp TEEEEEESSCTTCEEECCCCSC----SCEEEEEEETTTT--EEEEEETT---------TTEEEEEETTSCSCEEEEC---
T ss_pred CcEEEEECCCCCcceEEEcCCC----CceEEEEEECCCC--EEEEEECC---------CCeEEEEECCCCCcEEEEe---
Confidence 5666777766543332222111 1346777776432 56665421 1256666665443332211
Q ss_pred ccccCCCccEEE---CcEEEeeEEecCCCCCCCccEEEEEECCCCc
Q 015511 227 TGWRAGDESIIC---DGVLYFLIYATGGGAPENRHGLISFNLSSRS 269 (405)
Q Consensus 227 ~~~~~~~~~v~~---~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~ 269 (405)
... ....++.+ +|.|||.... ...|.++|+....
T Consensus 77 ~g~-~~P~GlAvD~~~~~LY~tD~~--------~~~I~v~~~dG~~ 113 (628)
T 4a0p_A 77 FGL-DYPEGMAVDWLGKNLYWADTG--------TNRIEVSKLDGQH 113 (628)
T ss_dssp SSC-SCCCEEEEETTTTEEEEEETT--------TTEEEEEETTSTT
T ss_pred CCC-CCcceEEEEeCCCEEEEEECC--------CCEEEEEecCCCc
Confidence 111 11234444 6999998632 2589999986543
No 190
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=33.69 E-value=2.4e+02 Score=24.55 Aligned_cols=207 Identities=11% Similarity=0.076 Sum_probs=92.7
Q ss_pred CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccc
Q 015511 146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEV 225 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~ 225 (405)
...++++|..+++...+.... . ....+.+.+..+. +++.+.... .. .....+.+++..++.++......
T Consensus 167 ~~~l~~~d~~~g~~~~~~~~~----~--~~~~~~~sp~dg~-~l~~~~~~~--~~--~~~~~l~~~d~~~~~~~~l~~~~ 235 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQDT----A--WLGHPIYRPFDDS-TVGFCHEGP--HD--LVDARMWLVNEDGSNVRKIKEHA 235 (396)
T ss_dssp CEEEEEEETTTCCEEEEEEES----S--CEEEEEEETTEEE-EEEEEECSC--SS--SCSCCCEEEETTSCCCEESSCCC
T ss_pred cceEEEEECCCCcEEeeccCC----c--ccccceECCCCCC-EEEEEecCC--CC--CCCceEEEEECCCCceeEeeccC
Confidence 357999999998887765321 1 1122333341122 233333211 00 01246788888776665432210
Q ss_pred cccccCCCccEEE-CcE-EEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEe-CCcEEEEEc
Q 015511 226 LTGWRAGDESIIC-DGV-LYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNL-KEKLVMVGG 302 (405)
Q Consensus 226 ~~~~~~~~~~v~~-~g~-iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~-~G~L~~v~~ 302 (405)
. ... .....+. +|. |++.....+ .....|..+|+.+.+... +...+.. . ....- +|++++...
T Consensus 236 ~-~~~-~~~~~~spdg~~l~~~~~~~~----~~~~~l~~~d~~~g~~~~-----l~~~~~~--~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 236 E-GES-CTHEFWIPDGSAMAYVSYFKG----QTDRVIYKANPETLENEE-----VMVMPPC--S-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp T-TEE-EEEEEECTTSSCEEEEEEETT----TCCEEEEEECTTTCCEEE-----EEECCSE--E-EEEECSSSSEEEEEE
T ss_pred C-Ccc-ccceEECCCCCEEEEEecCCC----CccceEEEEECCCCCeEE-----eeeCCCC--C-CCccCCCCceEEEec
Confidence 0 000 0011222 454 555544321 112359999998776432 1222321 1 22233 788766643
Q ss_pred cccc--------cccCccceEEEEEEeCceeEEEeccChhH--H--hccCCCCceeEEeeCCCEEEEEeC--CCCeEEEE
Q 015511 303 IGKQ--------DRPDIIKGIGIWVLNGKEWQEVARMPHKF--F--QGFGEFDDVFASSGTDDLIYIQSY--GAPSLLVY 368 (405)
Q Consensus 303 ~~~~--------~~~~~~~~~~vw~l~~~~W~~v~~i~~~~--~--~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~Y 368 (405)
...+ ........+.+|+++.++...+..-+... + .... ....+.....|+.|++... ....++.+
T Consensus 302 ~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 302 CDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQI-THPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp CCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSST-TCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccC-CCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 2100 00001244666666665554443322100 0 0000 0011234556777776653 23478888
Q ss_pred ECCCCcEEEc
Q 015511 369 DMNLKQWRWS 378 (405)
Q Consensus 369 d~~~~~w~~l 378 (405)
|+++++++.+
T Consensus 381 ~~~~~~~~~~ 390 (396)
T 3c5m_A 381 DVPESYKHLE 390 (396)
T ss_dssp ECCTTCC---
T ss_pred EEcccccccc
Confidence 8888877665
No 191
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=32.88 E-value=2.6e+02 Score=24.73 Aligned_cols=198 Identities=12% Similarity=0.108 Sum_probs=85.9
Q ss_pred ecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015511 133 SSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD 212 (405)
Q Consensus 133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~ 212 (405)
+.+|-.++.+. ..+.+.+||..+++....-.- + ......+.+.+.. .+ ++ .++. ...+.+||
T Consensus 132 s~dg~~l~s~~-~d~~i~iwd~~~~~~~~~~~~---h--~~~v~~~~~~p~~-~~-l~-s~s~---------d~~v~iwd 193 (393)
T 1erj_A 132 SPDGKFLATGA-EDRLIRIWDIENRKIVMILQG---H--EQDIYSLDYFPSG-DK-LV-SGSG---------DRTVRIWD 193 (393)
T ss_dssp CTTSSEEEEEE-TTSCEEEEETTTTEEEEEECC---C--SSCEEEEEECTTS-SE-EE-EEET---------TSEEEEEE
T ss_pred CCCCCEEEEEc-CCCeEEEEECCCCcEEEEEcc---C--CCCEEEEEEcCCC-CE-EE-EecC---------CCcEEEEE
Confidence 34554444332 247899999998876543211 1 1122344555543 22 33 3321 23788999
Q ss_pred CCCCCcccccccccccccCCCccEEE---CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCc--ccc
Q 015511 213 SDTMMWVTSWKEVLTGWRAGDESIIC---DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCA--LTC 287 (405)
Q Consensus 213 s~~~~W~~~~~~~~~~~~~~~~~v~~---~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~--~~~ 287 (405)
..++.-.... ........+.+ +|.+.+.+... ..+..||+.+..-.. .+..+.. ..+
T Consensus 194 ~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~s~d--------~~v~iwd~~~~~~~~-----~~~~~~~~~~~h 255 (393)
T 1erj_A 194 LRTGQCSLTL-----SIEDGVTTVAVSPGDGKYIAAGSLD--------RAVRVWDSETGFLVE-----RLDSENESGTGH 255 (393)
T ss_dssp TTTTEEEEEE-----ECSSCEEEEEECSTTCCEEEEEETT--------SCEEEEETTTCCEEE-----EEC------CCC
T ss_pred CCCCeeEEEE-----EcCCCcEEEEEECCCCCEEEEEcCC--------CcEEEEECCCCcEEE-----eecccccCCCCC
Confidence 8776532211 00111112222 45555555332 368889987765211 1111110 011
Q ss_pred -C---ceEE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChh--HHhcc-CCCCceeEE--eeCCCEEEE
Q 015511 288 -G---RLMN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHK--FFQGF-GEFDDVFAS--SGTDDLIYI 357 (405)
Q Consensus 288 -~---~l~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~--~~~~~-~~~~~~~~~--~~~~~~i~~ 357 (405)
. .+.. -+|++++.++.+ ..+.+|++....-......+.. ....+ +....+.++ ...+..|..
T Consensus 256 ~~~v~~v~~~~~g~~l~s~s~d--------~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 327 (393)
T 1erj_A 256 KDSVYSVVFTRDGQSVVSGSLD--------RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS 327 (393)
T ss_dssp SSCEEEEEECTTSSEEEEEETT--------SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCC--------CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEE
Confidence 1 1222 256666665432 4599999875321111111100 00001 111223333 233444443
Q ss_pred EeCCCCeEEEEECCCCcE
Q 015511 358 QSYGAPSLLVYDMNLKQW 375 (405)
Q Consensus 358 ~~~~~~~~~~Yd~~~~~w 375 (405)
...+..+.+||+++++-
T Consensus 328 -gs~D~~v~iwd~~~~~~ 344 (393)
T 1erj_A 328 -GSKDRGVLFWDKKSGNP 344 (393)
T ss_dssp -EETTSEEEEEETTTCCE
T ss_pred -EeCCCeEEEEECCCCeE
Confidence 33567899999988754
No 192
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=32.66 E-value=2.7e+02 Score=24.86 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=32.6
Q ss_pred CcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeE--EeeCCCEEEEEeCCCCeEEEEECCC
Q 015511 295 EKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFA--SSGTDDLIYIQSYGAPSLLVYDMNL 372 (405)
Q Consensus 295 G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~Yd~~~ 372 (405)
|.+++.++.+ ..+.+|++..+.= +..+. +....+.+ +...+..|+.. ..+..+.+||+++
T Consensus 308 g~~l~sgs~D--------~~i~iwd~~~~~~--~~~~~-------~h~~~v~~v~~~~~g~~l~s~-s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 308 GPFLLSGSRD--------KTIKMWDVSTGMC--LMTLV-------GHDNWVRGVLFHSGGKFILSC-ADDKTLRVWDYKN 369 (410)
T ss_dssp CCEEEEEETT--------SEEEEEETTTTEE--EEEEE-------CCSSCEEEEEECSSSSCEEEE-ETTTEEEEECCTT
T ss_pred CCEEEEEeCC--------CeEEEEECCCCce--EEEEE-------CCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCC
Confidence 5566555432 4599999876531 11111 00112222 23345555543 3567889999877
Q ss_pred Cc
Q 015511 373 KQ 374 (405)
Q Consensus 373 ~~ 374 (405)
++
T Consensus 370 ~~ 371 (410)
T 1vyh_C 370 KR 371 (410)
T ss_dssp SC
T ss_pred Cc
Confidence 64
No 193
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=32.49 E-value=2.3e+02 Score=23.90 Aligned_cols=105 Identities=12% Similarity=-0.097 Sum_probs=52.2
Q ss_pred cEEEEEECCCCcchhhhcccccccCCcc-ccCceEE-eCCc-EEEEEccccccccCccceEEEEEEeCceeEEEeccChh
Q 015511 258 HGLISFNLSSRSSHALLIKSFIPVPCAL-TCGRLMN-LKEK-LVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHK 334 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~~-~~~~l~~-~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~ 334 (405)
..|..+|+.+.+-.. .+..+... ....+.. -+|+ |++.... ...+.+|++...+-.....++..
T Consensus 11 ~~v~~~d~~~~~~~~-----~~~~~~~~~~~~~~~~s~dg~~l~v~~~~--------~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 11 DKLVVIDTEKMAVDK-----VITIADAGPTPMVPMVAPGGRIAYATVNK--------SESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp TEEEEEETTTTEEEE-----EEECTTCTTCCCCEEECTTSSEEEEEETT--------TTEEEEEETTTCCEEEEEECCBT
T ss_pred CeEEEEECCCCcEEE-----EEEcCCCCCCccceEEcCCCCEEEEEeCC--------CCeEEEEECCCCCeEeeEEcCCc
Confidence 478889988765321 22323211 1122333 3564 5555432 24588888776543332222210
Q ss_pred HHhccCCCCceeEEeeCCCEEEEEeC-----------CCCeEEEEECCCCcEEE
Q 015511 335 FFQGFGEFDDVFASSGTDDLIYIQSY-----------GAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~~~~~~~Yd~~~~~w~~ 377 (405)
-.. +.....+++...|+.+|+... ....+.+||+++++...
T Consensus 78 ~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 78 EER--VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp TEE--EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred ccc--cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEE
Confidence 000 000122344556777777631 24688899998876543
No 194
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=32.33 E-value=52 Score=28.96 Aligned_cols=65 Identities=11% Similarity=0.167 Sum_probs=35.5
Q ss_pred CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEE--eeCCCEEEEEeCCCCeEEEEECC
Q 015511 294 KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFAS--SGTDDLIYIQSYGAPSLLVYDMN 371 (405)
Q Consensus 294 ~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~Yd~~ 371 (405)
+|++++.++.+ ..+.+|+++...|..+..+... ...+.++ ...++.++... .+..+.+||++
T Consensus 22 ~g~~l~~~~~d--------~~i~iw~~~~~~~~~~~~~~~h-------~~~v~~~~~s~~~~~l~s~s-~d~~v~vwd~~ 85 (377)
T 3dwl_C 22 QRTEFVTTTAT--------NQVELYEQDGNGWKHARTFSDH-------DKIVTCVDWAPKSNRIVTCS-QDRNAYVYEKR 85 (377)
T ss_dssp SSSEEECCCSS--------SCBCEEEEETTEEEECCCBCCC-------SSCEEEEEECTTTCCEEEEE-TTSSEEEC---
T ss_pred CCCEEEEecCC--------CEEEEEEccCCceEEEEEEecC-------CceEEEEEEeCCCCEEEEEe-CCCeEEEEEcC
Confidence 56666555422 4589999999888777665421 1123333 34455555443 46789999999
Q ss_pred CCc
Q 015511 372 LKQ 374 (405)
Q Consensus 372 ~~~ 374 (405)
+++
T Consensus 86 ~~~ 88 (377)
T 3dwl_C 86 PDG 88 (377)
T ss_dssp ---
T ss_pred CCC
Confidence 887
No 195
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=32.26 E-value=2.2e+02 Score=23.66 Aligned_cols=26 Identities=4% Similarity=-0.077 Sum_probs=15.9
Q ss_pred cCceEEEEeCCCCceEEEEeCcccceee
Q 015511 134 SYGLVCFMDNDSRSELYVCNPISKSWKK 161 (405)
Q Consensus 134 ~~Gll~~~~~~~~~~~~v~NP~T~~~~~ 161 (405)
.+++++..+. .+.+.+||..+++...
T Consensus 28 ~~~~l~s~~~--dg~v~vw~~~~~~~~~ 53 (313)
T 3odt_A 28 DDSKVASVSR--DGTVRLWSKDDQWLGT 53 (313)
T ss_dssp ETTEEEEEET--TSEEEEEEESSSEEEE
T ss_pred CCCEEEEEEc--CCcEEEEECCCCEEEE
Confidence 3445444433 4778899987766544
No 196
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=32.21 E-value=2.9e+02 Score=25.02 Aligned_cols=123 Identities=10% Similarity=0.032 Sum_probs=64.3
Q ss_pred CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEe-CC-cEEEEEccccc-cccCccceE
Q 015511 239 DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNL-KE-KLVMVGGIGKQ-DRPDIIKGI 315 (405)
Q Consensus 239 ~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~-~G-~L~~v~~~~~~-~~~~~~~~~ 315 (405)
+..+|+..... ......+..+|+.+.+-. ...|..... .++.. +| .||+....... .+......+
T Consensus 44 ~~~vyV~~~~~----~~~~~~V~ViD~~t~~v~-------~~I~vG~~P-~va~spDG~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 44 ARRVYVNDPAH----FAAVTQQFVIDGEAGRVI-------GMIDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp TTEEEEEECGG----GCSSEEEEEEETTTTEEE-------EEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEEcCcc----cCCCCEEEEEECCCCeEE-------EEEECCCCC-cEEECCCCCEEEEEcccccccccCCCCCEE
Confidence 56788876420 001258999999987732 122222222 34443 45 56766532100 000013457
Q ss_pred EEEEEeCceeEEEecc--Ch-hHHhccCCCCceeEEeeCCCEEEEEeCC-CCeEEEEECCCCcEE
Q 015511 316 GIWVLNGKEWQEVARM--PH-KFFQGFGEFDDVFASSGTDDLIYIQSYG-APSLLVYDMNLKQWR 376 (405)
Q Consensus 316 ~vw~l~~~~W~~v~~i--~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~Yd~~~~~w~ 376 (405)
.+|+....+ .+..+ +. ... .-+....-+++..+|+.+|+.+.. ...+-+.|+++++..
T Consensus 112 sviD~~t~~--v~~~I~v~~g~r~-~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 112 EVFDPVTLL--PTADIELPDAPRF-LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp EEECTTTCC--EEEEEEETTCCCC-CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred EEEECCCCe--EEEEEECCCcccc-ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence 777666543 23322 21 000 001112335667789999998753 568899999998764
No 197
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=31.20 E-value=2.7e+02 Score=24.44 Aligned_cols=186 Identities=10% Similarity=0.063 Sum_probs=86.2
Q ss_pred CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccc
Q 015511 146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEV 225 (405)
Q Consensus 146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~ 225 (405)
+..+.+||..+++....-..............+.+.+.... +++.++. ...+.+||.+...=.. . .
T Consensus 179 D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~sgs~---------D~~v~~wd~~~~~~~~--~-~ 244 (380)
T 3iz6_a 179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN--MFISGSC---------DTTVRLWDLRITSRAV--R-T 244 (380)
T ss_dssp TSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCC--EEEEEET---------TSCEEEEETTTTCCCC--E-E
T ss_pred CCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCC--EEEEEEC---------CCeEEEEECCCCCcce--E-E
Confidence 46789999999877654321111111112233444332222 3333432 1378899875322100 0 0
Q ss_pred cccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcc-----cc-CceE-EeCCc
Q 015511 226 LTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCAL-----TC-GRLM-NLKEK 296 (405)
Q Consensus 226 ~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~-----~~-~~l~-~~~G~ 296 (405)
..........+.+ +|...+.+... ..+..+|+.+..-... ....... .. ..+. ..+|+
T Consensus 245 ~~~h~~~v~~v~~~p~~~~l~s~s~D--------~~i~lwd~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~g~ 311 (380)
T 3iz6_a 245 YHGHEGDINSVKFFPDGQRFGTGSDD--------GTCRLFDMRTGHQLQV-----YNREPDRNDNELPIVTSVAFSISGR 311 (380)
T ss_dssp ECCCSSCCCEEEECTTSSEEEEECSS--------SCEEEEETTTTEEEEE-----ECCCCSSSCCSSCSCSEEEECSSSS
T ss_pred ECCcCCCeEEEEEecCCCeEEEEcCC--------CeEEEEECCCCcEEEE-----ecccccccccccCceEEEEECCCCC
Confidence 1111111223333 45544444321 3688899887652211 1111100 01 1122 23678
Q ss_pred EEEEEccccccccCccceEEEEEEeCceeEE-EeccChhHHhccCCCCce--eEEeeCCCEEEEEeCCCCeEEEEECCCC
Q 015511 297 LVMVGGIGKQDRPDIIKGIGIWVLNGKEWQE-VARMPHKFFQGFGEFDDV--FASSGTDDLIYIQSYGAPSLLVYDMNLK 373 (405)
Q Consensus 297 L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~-v~~i~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~Yd~~~~ 373 (405)
+++++..+ ..+.+|++...+-.. +..+... ....+ +++...|..+.. ...+..+.+||+..+
T Consensus 312 ~l~~g~~d--------g~i~vwd~~~~~~~~~~~~~~~~------h~~~v~~l~~s~dg~~l~s-gs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 312 LLFAGYSN--------GDCYVWDTLLAEMVLNLGTLQNS------HEGRISCLGLSSDGSALCT-GSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEEEECTT--------SCEEEEETTTCCEEEEECCSCSS------CCCCCCEEEECSSSSEEEE-ECTTSCEEEEECCSS
T ss_pred EEEEEECC--------CCEEEEECCCCceEEEEecccCC------CCCceEEEEECCCCCEEEE-eeCCCCEEEEecCCC
Confidence 77776532 459999887654322 2222110 00112 233445655544 345778999998765
No 198
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=31.13 E-value=2.4e+02 Score=23.72 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=31.1
Q ss_pred ceEEEEEEeCc--eeEEEeccChhHHhccCCCCceeEE--eeCC--CEEEEEeCCCCeEEEEECCCC
Q 015511 313 KGIGIWVLNGK--EWQEVARMPHKFFQGFGEFDDVFAS--SGTD--DLIYIQSYGAPSLLVYDMNLK 373 (405)
Q Consensus 313 ~~~~vw~l~~~--~W~~v~~i~~~~~~~~~~~~~~~~~--~~~~--~~i~~~~~~~~~~~~Yd~~~~ 373 (405)
..+.+|++... .|..+..+.. ....+.++ ...+ +..++....+..+.+||+++.
T Consensus 180 ~~v~lwd~~~~~~~~~~~~~l~~-------H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 180 NLVKIWKYNSDAQTYVLESTLEG-------HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp SCEEEEEEETTTTEEEEEEEECC-------CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred CcEEEEEEcCCCceEEEEEEecC-------CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 45999999863 4666554431 01123333 2332 345555456778999998874
No 199
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=30.99 E-value=2.2e+02 Score=25.13 Aligned_cols=108 Identities=14% Similarity=0.156 Sum_probs=56.1
Q ss_pred cEEEEEECCCCcchhhhcccccccCCccccCceEEe-CC-cEEEEEccccc-cccCccceEEEEEEeCceeEEEeccC--
Q 015511 258 HGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNL-KE-KLVMVGGIGKQ-DRPDIIKGIGIWVLNGKEWQEVARMP-- 332 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~-~G-~L~~v~~~~~~-~~~~~~~~~~vw~l~~~~W~~v~~i~-- 332 (405)
..+..||+.+.+-. ...|..... .++.. +| .||+....... .+......+.+|+++.. +.+..++
T Consensus 31 ~~v~v~D~~t~~~~-------~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~--~~~~~i~~~ 100 (361)
T 2oiz_A 31 SRVHVYDYTNGKFL-------GMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL--TFEKEISLP 100 (361)
T ss_dssp CEEEEEETTTCCEE-------EEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC--CEEEEEEEC
T ss_pred CeEEEEECCCCeEE-------EEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC--cEEEEEEcC
Confidence 37889998877632 122222222 44443 45 56666532100 00011345888876542 2333222
Q ss_pred hhHHhccCCCCceeEEeeCCCEEEEEeCC-CCeEEEEECCCCcEE
Q 015511 333 HKFFQGFGEFDDVFASSGTDDLIYIQSYG-APSLLVYDMNLKQWR 376 (405)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~Yd~~~~~w~ 376 (405)
..... -+....-+++...|+.+|+.+.. ...+.+||+++++-.
T Consensus 101 ~~~~~-~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~ 144 (361)
T 2oiz_A 101 PKRVQ-GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYV 144 (361)
T ss_dssp TTBCC-BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEE
T ss_pred ccccc-cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEE
Confidence 11110 01112335667789999998754 578999999998653
No 200
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=30.72 E-value=2.9e+02 Score=24.62 Aligned_cols=52 Identities=12% Similarity=0.147 Sum_probs=29.1
Q ss_pred ceEEEEEEeCceeEEEeccChhHHhccCCCCcee--EEeeCCCEEEEEe-CCCCeEEEEECCCCc
Q 015511 313 KGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVF--ASSGTDDLIYIQS-YGAPSLLVYDMNLKQ 374 (405)
Q Consensus 313 ~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~--~~~~~~~~i~~~~-~~~~~~~~Yd~~~~~ 374 (405)
..+.+|++..+.-........ .+. .....++.+++.. ..+..+.+||..+++
T Consensus 301 ~~I~iwd~~t~~~~~~~~~~~----------~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 301 RHIRIWNVCSGACLSAVDAHS----------QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 355 (420)
T ss_dssp CEEEEEETTTTEEEEEEECSS----------CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred CEEEEEeCCccccceeecccc----------ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence 469999888654332221111 122 2234566665543 346688899988764
No 201
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=30.68 E-value=1.8e+02 Score=24.49 Aligned_cols=60 Identities=10% Similarity=-0.070 Sum_probs=36.5
Q ss_pred ceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEE
Q 015511 313 KGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 313 ~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~ 377 (405)
..+.+|++...+-.....++.... ....+++...|+.+|+.......+.+||+++++...
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~ 70 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGP-----TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG 70 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTT-----CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CeEEEEECCCCcEEEEEEcCCCCC-----CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe
Confidence 458888777654433333332100 012244556778888887666789999999887643
No 202
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=30.42 E-value=2.5e+02 Score=23.76 Aligned_cols=26 Identities=8% Similarity=0.259 Sum_probs=17.4
Q ss_pred eeCCCEEEEEeCCCCeEEEEECCCCcE
Q 015511 349 SGTDDLIYIQSYGAPSLLVYDMNLKQW 375 (405)
Q Consensus 349 ~~~~~~i~~~~~~~~~~~~Yd~~~~~w 375 (405)
...++.++... .+..+.+||+++++-
T Consensus 260 s~~~~~l~~~~-~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 260 SPRHKFLYTAG-SDGIISCWNLQTRKK 285 (342)
T ss_dssp CTTTCCEEEEE-TTSCEEEEETTTTEE
T ss_pred cCCCCEEEEec-CCceEEEEcCccHhH
Confidence 34455555443 567899999998764
No 203
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=30.17 E-value=2.6e+02 Score=23.84 Aligned_cols=66 Identities=14% Similarity=0.090 Sum_probs=35.1
Q ss_pred CCcEEEEEccccccccCccceEEEEEEeC-ceeEEEeccChhHHhccCCCCcee--EEeeCCCEEEEEeCCCCeEEEEEC
Q 015511 294 KEKLVMVGGIGKQDRPDIIKGIGIWVLNG-KEWQEVARMPHKFFQGFGEFDDVF--ASSGTDDLIYIQSYGAPSLLVYDM 370 (405)
Q Consensus 294 ~G~L~~v~~~~~~~~~~~~~~~~vw~l~~-~~W~~v~~i~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~Yd~ 370 (405)
+|++++++.. ...+.+|++.. .+-........ ..+. .+...++.++... .+..+.+||+
T Consensus 186 ~~~~l~~~~~--------dg~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~ 247 (369)
T 3zwl_B 186 KGKYIIAGHK--------DGKISKYDVSNNYEYVDSIDLHE---------KSISDMQFSPDLTYFITSS-RDTNSFLVDV 247 (369)
T ss_dssp GGCEEEEEET--------TSEEEEEETTTTTEEEEEEECCS---------SCEEEEEECTTSSEEEEEE-TTSEEEEEET
T ss_pred CCCEEEEEcC--------CCEEEEEECCCCcEeEEEEecCC---------CceeEEEECCCCCEEEEec-CCceEEEEEC
Confidence 4566655542 24589998876 33222211111 1122 2334555555543 4668888998
Q ss_pred CCCcEEE
Q 015511 371 NLKQWRW 377 (405)
Q Consensus 371 ~~~~w~~ 377 (405)
++++...
T Consensus 248 ~~~~~~~ 254 (369)
T 3zwl_B 248 STLQVLK 254 (369)
T ss_dssp TTCCEEE
T ss_pred CCCceee
Confidence 8875543
No 204
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.34 E-value=2.9e+02 Score=24.22 Aligned_cols=94 Identities=10% Similarity=-0.004 Sum_probs=47.1
Q ss_pred CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCC
Q 015511 294 KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLK 373 (405)
Q Consensus 294 ~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~ 373 (405)
+|++++.++.+ ..+.+|++..+.-..+..............-..+++...|..++.. ..+..+.+||..++
T Consensus 260 ~~~~l~s~s~D--------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~ 330 (380)
T 3iz6_a 260 DGQRFGTGSDD--------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAG-YSNGDCYVWDTLLA 330 (380)
T ss_dssp TSSEEEEECSS--------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEE-CTTSCEEEEETTTC
T ss_pred CCCeEEEEcCC--------CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEE-ECCCCEEEEECCCC
Confidence 56766666532 4599999987653333222111000000000123334556666654 45778999999887
Q ss_pred cEEE-ccCCCCCCCCcccceeeeeece
Q 015511 374 QWRW-SHKCPVTKRFPLQLFTGFCFEP 399 (405)
Q Consensus 374 ~w~~-l~~~p~~~~~~~~~~~~~~~~p 399 (405)
+-.. +......+. ....+++|.|
T Consensus 331 ~~~~~~~~~~~~h~---~~v~~l~~s~ 354 (380)
T 3iz6_a 331 EMVLNLGTLQNSHE---GRISCLGLSS 354 (380)
T ss_dssp CEEEEECCSCSSCC---CCCCEEEECS
T ss_pred ceEEEEecccCCCC---CceEEEEECC
Confidence 6533 322222222 2245666665
No 205
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=29.05 E-value=4.1e+02 Score=25.88 Aligned_cols=62 Identities=8% Similarity=0.072 Sum_probs=35.6
Q ss_pred EEEEEeCCCC--CcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--ch
Q 015511 207 SIHIYDSDTM--MWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SH 271 (405)
Q Consensus 207 ~~~vy~s~~~--~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~ 271 (405)
.+..+|..++ .|+....+..........+++.+|.+|+-..... ......|.+||..+.+ |+
T Consensus 128 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~---~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 128 RLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAE---YGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp EEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTT---TCCBCEEEEEETTTCCEEEE
T ss_pred EEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCC---cCCCCEEEEEECCCCcEEEE
Confidence 6777886554 5876432111112223457788999988543210 0123589999998765 54
No 206
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=28.90 E-value=2.4e+02 Score=23.00 Aligned_cols=199 Identities=12% Similarity=0.013 Sum_probs=90.5
Q ss_pred ecCceEEEEeCCCCceEEEEeCcc-cceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEE
Q 015511 133 SSYGLVCFMDNDSRSELYVCNPIS-KSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIY 211 (405)
Q Consensus 133 s~~Gll~~~~~~~~~~~~v~NP~T-~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy 211 (405)
+.+|-.++... ...++++|..+ ++...+...... ... ..+...+.. .+ +++..... . ....+.++
T Consensus 50 spdg~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~--~~~--~~~~~spdg-~~-l~~~~~~~-~-----~~~~l~~~ 115 (297)
T 2ojh_A 50 SPDGKYLLLNS--EGLLYRLSLAGDPSPEKVDTGFAT--ICN--NDHGISPDG-AL-YAISDKVE-F-----GKSAIYLL 115 (297)
T ss_dssp CTTSSEEEEEE--TTEEEEEESSSCCSCEECCCTTCC--CBC--SCCEECTTS-SE-EEEEECTT-T-----SSCEEEEE
T ss_pred CCCCCEEEEEc--CCeEEEEeCCCCCCceEecccccc--ccc--cceEECCCC-CE-EEEEEeCC-C-----CcceEEEE
Confidence 44454444333 36899999999 877766532210 111 123344432 23 33322110 0 13467777
Q ss_pred eCCCCCcccccccccccccCCCccEEE--CcE-EEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccC
Q 015511 212 DSDTMMWVTSWKEVLTGWRAGDESIIC--DGV-LYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCG 288 (405)
Q Consensus 212 ~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~-iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~ 288 (405)
+..++.-....... ....+.. +|. +++.+... ....|..+|..+..... ....+. ...
T Consensus 116 ~~~~~~~~~~~~~~------~~~~~~~spdg~~l~~~~~~~------~~~~l~~~~~~~~~~~~-----~~~~~~--~~~ 176 (297)
T 2ojh_A 116 PSTGGTPRLMTKNL------PSYWHGWSPDGKSFTYCGIRD------QVFDIYSMDIDSGVETR-----LTHGEG--RND 176 (297)
T ss_dssp ETTCCCCEECCSSS------SEEEEEECTTSSEEEEEEEET------TEEEEEEEETTTCCEEE-----CCCSSS--CEE
T ss_pred ECCCCceEEeecCC------CccceEECCCCCEEEEEECCC------CceEEEEEECCCCcceE-----cccCCC--ccc
Confidence 77665533322110 0111112 443 44444322 12356777776655321 111111 111
Q ss_pred ceE-EeCCcEEEEEccccccccCccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC----
Q 015511 289 RLM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG---- 361 (405)
Q Consensus 289 ~l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---- 361 (405)
.+. .-+|+.+++.... ...+.+|.++. .....+..-... ...+.+...++.|++....
T Consensus 177 ~~~~s~dg~~l~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~s~dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 177 GPDYSPDGRWIYFNSSR-------TGQMQIWRVRVDGSSVERITDSAYG--------DWFPHPSPSGDKVVFVSYDADVF 241 (297)
T ss_dssp EEEECTTSSEEEEEECT-------TSSCEEEEEETTSSCEEECCCCSEE--------EEEEEECTTSSEEEEEEEETTCC
T ss_pred cceECCCCCEEEEEecC-------CCCccEEEECCCCCCcEEEecCCcc--------cCCeEECCCCCEEEEEEcCCCCC
Confidence 122 2356654444311 13478898873 333322211100 0112334567776665431
Q ss_pred ------CCeEEEEECCCCcEEEcc
Q 015511 362 ------APSLLVYDMNLKQWRWSH 379 (405)
Q Consensus 362 ------~~~~~~Yd~~~~~w~~l~ 379 (405)
...+.+||+++++...+.
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSCEEEE
T ss_pred cccccCceEEEEEecCCCCceeee
Confidence 246999999998876654
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.49 E-value=3.3e+02 Score=24.53 Aligned_cols=230 Identities=10% Similarity=-0.003 Sum_probs=100.7
Q ss_pred eeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCCCceEEEEeCcccce-eeccCCCCCCCCccceeEEEEeCC
Q 015511 105 IGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSW-KKLEEPPGLKFSDYSALSLSVDRV 183 (405)
Q Consensus 105 ~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~-~~lP~~~~~~~~~~~~~~~~~~~~ 183 (405)
....+|+..+....+...... ....+...++.|+..+......++++++.++.. ..+........... ..+.+++.
T Consensus 153 ~I~~id~~~g~~~~~~~~~~~-~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p--~~iav~p~ 229 (409)
T 3hrp_A 153 RVRLISVDDNKVTTVHPGFKG-GKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKI--GAVALDET 229 (409)
T ss_dssp EEEEEETTTTEEEEEEETCCB-CBCEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCC--CBCEECTT
T ss_pred cEEEEECCCCEEEEeeccCCC-CceeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCc--EEEEEeCC
Confidence 345566655543332211111 112233344566666543334899999987653 23311100000111 23444553
Q ss_pred CCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCC--ccEEE---CcEEEeeEEecCCCCCCCcc
Q 015511 184 SHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGD--ESIIC---DGVLYFLIYATGGGAPENRH 258 (405)
Q Consensus 184 ~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~--~~v~~---~g~iy~l~~~~~~~~~~~~~ 258 (405)
.+ .|++... ...+..|+..++.-............... ..+.+ +|.+|+.... ..
T Consensus 230 ~g--~lyv~d~----------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~--------~~ 289 (409)
T 3hrp_A 230 EE--WLYFVDS----------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN--------LS 289 (409)
T ss_dssp SS--EEEEECT----------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT--------TT
T ss_pred CC--eEEEEEC----------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC--------CC
Confidence 22 3454221 12677888766653322100000001111 13333 5889987632 25
Q ss_pred EEEEEECCCCcchhhhcccccccC---C---------cccc-CceE-EeCCcEEEEEc-cccccccCccceEEEEEEeCc
Q 015511 259 GLISFNLSSRSSHALLIKSFIPVP---C---------ALTC-GRLM-NLKEKLVMVGG-IGKQDRPDIIKGIGIWVLNGK 323 (405)
Q Consensus 259 ~i~~fD~~~~~w~~~~~~~~~~~p---~---------~~~~-~~l~-~~~G~L~~v~~-~~~~~~~~~~~~~~vw~l~~~ 323 (405)
.|..||+.... .. ..-.+ . .... ..++ ..+|+||+... . ..++.+|.+.++
T Consensus 290 ~I~~~~~~g~~-~~-----~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~--------~~~I~~~~~~~G 355 (409)
T 3hrp_A 290 SVYKITPDGEC-EW-----FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK--------GYCLRKLDILDG 355 (409)
T ss_dssp EEEEECTTCCE-EE-----EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT--------TCEEEEEETTTT
T ss_pred EEEEEecCCCE-EE-----EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC--------CCEEEEEECCCC
Confidence 79999886542 11 11000 0 0111 1233 34688998864 3 244777765555
Q ss_pred eeEEEeccChh--HHhccC---CCCceeEEee-CCCEEEEEeCCCCeEEEEECC
Q 015511 324 EWQEVARMPHK--FFQGFG---EFDDVFASSG-TDDLIYIQSYGAPSLLVYDMN 371 (405)
Q Consensus 324 ~W~~v~~i~~~--~~~~~~---~~~~~~~~~~-~~~~i~~~~~~~~~~~~Yd~~ 371 (405)
.-..+..-+.. ...+.. ....+.++.. .++.||+.......+..|+++
T Consensus 356 ~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 356 YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 54443322110 000000 0012333322 237888877666677777653
No 208
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=27.09 E-value=2.7e+02 Score=23.05 Aligned_cols=55 Identities=13% Similarity=0.356 Sum_probs=32.3
Q ss_pred ceEEEEEEeCceeEEEeccChhHHhccCCCCcee--EEeeCCCEEEEEeCCCCeEEEEECCCCcEEEc
Q 015511 313 KGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVF--ASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWS 378 (405)
Q Consensus 313 ~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l 378 (405)
..+.+|++...+-......+.. .+. ++...+. ++ ....+..+.+||++++++...
T Consensus 246 g~v~iwd~~~~~~~~~~~~~~~---------~i~~~~~~~~~~-~~-~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 246 RTVRIWSKENGSLKQVITLPAI---------SIWSVDCMSNGD-II-VGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp SEEEEECTTTCCEEEEEECSSS---------CEEEEEECTTSC-EE-EEETTSCEEEEESCGGGCCC-
T ss_pred CEEEEEECCCCceeEEEeccCc---------eEEEEEEccCCC-EE-EEeCCCcEEEEeCCCCceeeh
Confidence 4599999887654443332211 222 2334455 33 344577999999999987543
No 209
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=26.17 E-value=3.3e+02 Score=23.87 Aligned_cols=102 Identities=10% Similarity=0.092 Sum_probs=47.9
Q ss_pred cEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCc-eeEEEeccChh-H
Q 015511 258 HGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGK-EWQEVARMPHK-F 335 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~-~W~~v~~i~~~-~ 335 (405)
..|..||+.+.+-. + ..+..........+...+|++++.++. -..+.+|++.+. .-..+..+... .
T Consensus 313 g~i~vwd~~~~~~~-~---~~~~~~~~~~v~~~~~~~~~~l~s~~~--------d~~v~iw~~~~~~~~~~~~~~~~~~~ 380 (420)
T 3vl1_A 313 GMLAQWDLRSPECP-V---GEFLINEGTPINNVYFAAGALFVSSGF--------DTSIKLDIISDPESERPAIEFETPTF 380 (420)
T ss_dssp SEEEEEETTCTTSC-S---EEEEESTTSCEEEEEEETTEEEEEETT--------TEEEEEEEECCTTCCSCEECTTSCEE
T ss_pred CeEEEEEcCCCcCc-h---hhhhccCCCCceEEEeCCCCEEEEecC--------CccEEEEeccCCCCCccceeccCccE
Confidence 47999999876411 0 011111111112244457777666653 246999999852 11112211111 0
Q ss_pred HhccCCCCceeEEeeCCC---EEEEEeCCCCeEEEEECCC
Q 015511 336 FQGFGEFDDVFASSGTDD---LIYIQSYGAPSLLVYDMNL 372 (405)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~Yd~~~ 372 (405)
.......-.-++....+. .++... ....+.+|+++.
T Consensus 381 ~~~~~~~v~~~~~s~~~~~~g~l~a~g-~~g~~~~~~~~~ 419 (420)
T 3vl1_A 381 LVSNDDAVSQFCYVSDDESNGEVLEVG-KNNFCALYNLSN 419 (420)
T ss_dssp ECCSSCCCCEEEEECCSSSSCEEEEEE-TTTEEEEEESCC
T ss_pred EccCCcceEEEEEccCCCCcceEEEEc-CCceEEEEeccC
Confidence 000000001223344555 566654 346788898875
No 210
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=26.14 E-value=4.5e+02 Score=25.39 Aligned_cols=92 Identities=12% Similarity=0.157 Sum_probs=47.0
Q ss_pred cEEEEEECCCCcchhhhcccccccCCcccc-CceE-EeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhH
Q 015511 258 HGLISFNLSSRSSHALLIKSFIPVPCALTC-GRLM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKF 335 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~ 335 (405)
..|..+|+.+.+-. ..+...... ..+. .-+|++++.++.+ ..+.+|++...+ .+..+...
T Consensus 541 ~~v~vwd~~~~~~~-------~~~~~h~~~v~~v~~spdg~~l~sg~~D--------g~i~iwd~~~~~--~~~~~~~~- 602 (694)
T 3dm0_A 541 KTVKVWNLSNCKLR-------STLAGHTGYVSTVAVSPDGSLCASGGKD--------GVVLLWDLAEGK--KLYSLEAN- 602 (694)
T ss_dssp SCEEEEETTTCCEE-------EEECCCSSCEEEEEECTTSSEEEEEETT--------SBCEEEETTTTE--EEECCBCS-
T ss_pred CeEEEEECCCCcEE-------EEEcCCCCCEEEEEEeCCCCEEEEEeCC--------CeEEEEECCCCc--eEEEecCC-
Confidence 36888998776522 111111111 1122 2357777666532 459999988654 23333211
Q ss_pred HhccCCCCcee--EEeeCCCEEEEEeCCCCeEEEEECCCCcEE
Q 015511 336 FQGFGEFDDVF--ASSGTDDLIYIQSYGAPSLLVYDMNLKQWR 376 (405)
Q Consensus 336 ~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~ 376 (405)
..+. ++...+..+.... +..+.+||+++++-.
T Consensus 603 -------~~v~~~~~sp~~~~l~~~~--~~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 603 -------SVIHALCFSPNRYWLCAAT--EHGIKIWDLESKSIV 636 (694)
T ss_dssp -------SCEEEEEECSSSSEEEEEE--TTEEEEEETTTTEEE
T ss_pred -------CcEEEEEEcCCCcEEEEEc--CCCEEEEECCCCCCh
Confidence 1122 2233444444432 457899999988653
No 211
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=25.91 E-value=3.1e+02 Score=23.32 Aligned_cols=152 Identities=13% Similarity=0.149 Sum_probs=0.0
Q ss_pred eeEEEEeCCC--CcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecC
Q 015511 175 ALSLSVDRVS--HRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATG 250 (405)
Q Consensus 175 ~~~~~~~~~~--~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~ 250 (405)
...+.+.+.. +.+.+...... .+.+|+..++.... .............+.. +|...+.+...
T Consensus 42 v~~~~~~~~~~~g~~l~~~~~dg-----------~i~iw~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~d- 107 (368)
T 3mmy_A 42 IGCLSFSPPTLPGNFLIAGSWAN-----------DVRCWEVQDSGQTI--PKAQQMHTGPVLDVCWSDDGSKVFTASCD- 107 (368)
T ss_dssp EEEEEECCTTSSSEEEEEEETTS-----------EEEEEEECTTSCEE--EEEEEECSSCEEEEEECTTSSEEEEEETT-
T ss_pred eEEEEEcCCCCCceEEEEECCCC-----------cEEEEEcCCCCcee--EEEeccccCCEEEEEECcCCCEEEEEcCC-
Q ss_pred CCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEe----CCcEEEEEccccccccCccceEEEEEEeCceeE
Q 015511 251 GGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNL----KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQ 326 (405)
Q Consensus 251 ~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~----~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~ 326 (405)
..+..||+.+.+ .+..........-+.+ +|++++.++.+.. +.+|++...+-.
T Consensus 108 -------g~v~iwd~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~--------i~vwd~~~~~~~ 164 (368)
T 3mmy_A 108 -------KTAKMWDLSSNQ--------AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKT--------LKFWDTRSSNPM 164 (368)
T ss_dssp -------SEEEEEETTTTE--------EEEEEECSSCEEEEEEEECSSCEEEEEEETTSE--------EEEECSSCSSCS
T ss_pred -------CcEEEEEcCCCC--------ceeeccccCceEEEEEEeCCCCCEEEEccCCCc--------EEEEECCCCcEE
Q ss_pred EEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCc
Q 015511 327 EVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQ 374 (405)
Q Consensus 327 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~ 374 (405)
.....+. .+..+...++.+++.. .+..+.+||++++.
T Consensus 165 ~~~~~~~----------~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~ 201 (368)
T 3mmy_A 165 MVLQLPE----------RCYCADVIYPMAVVAT-AERGLIVYQLENQP 201 (368)
T ss_dssp EEEECSS----------CEEEEEEETTEEEEEE-GGGCEEEEECSSSC
T ss_pred EEEecCC----------CceEEEecCCeeEEEe-CCCcEEEEEecccc
No 212
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=25.58 E-value=4.7e+02 Score=25.38 Aligned_cols=193 Identities=10% Similarity=0.000 Sum_probs=92.7
Q ss_pred ceEEEEeCccccee--eccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccc
Q 015511 147 SELYVCNPISKSWK--KLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKE 224 (405)
Q Consensus 147 ~~~~v~NP~T~~~~--~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~ 224 (405)
..+++++.-|++-. .+-..+. ..........+++. +|.++..... . ....+.+++..++.|+.....
T Consensus 202 ~~v~~~~l~t~~~~~~lv~~~~~---~~~~~~~~~~SpDG-~~l~~~~~~~-~------~~~~l~~~~~~~~~~~~l~~~ 270 (695)
T 2bkl_A 202 TTIRYHTLGTEPSKDTVVHERTG---DPTTFLQSDLSRDG-KYLFVYILRG-W------SENDVYWKRPGEKDFRLLVKG 270 (695)
T ss_dssp CEEEEEETTSCGGGCEEEECCCC---CTTCEEEEEECTTS-CCEEEEEEET-T------TEEEEEEECTTCSSCEEEEEC
T ss_pred CEEEEEECCCCchhceEEEecCC---CCEEEEEEEECCCC-CEEEEEEeCC-C------CceEEEEEcCCCCceEEeecC
Confidence 45999999887632 2322111 10112344455543 4544443221 0 134667777666777654321
Q ss_pred ccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc---chhhhcccccccCCccccCceEEeCCcEEEEE
Q 015511 225 VLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS---SHALLIKSFIPVPCALTCGRLMNLKEKLVMVG 301 (405)
Q Consensus 225 ~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~---w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~ 301 (405)
......++..+|.+|+.... ......|..+|+.+.. |..+ ++-.....-..+...+|+|++..
T Consensus 271 ----~~~~~~~~~~~g~l~~~s~~-----~~~~~~l~~~d~~~~~~~~~~~l-----~~~~~~~~l~~~~~~~~~lv~~~ 336 (695)
T 2bkl_A 271 ----VGAKYEVHAWKDRFYVLTDE-----GAPRQRVFEVDPAKPARASWKEI-----VPEDSSASLLSVSIVGGHLSLEY 336 (695)
T ss_dssp ----SSCCEEEEEETTEEEEEECT-----TCTTCEEEEEBTTBCSGGGCEEE-----ECCCSSCEEEEEEEETTEEEEEE
T ss_pred ----CCceEEEEecCCcEEEEECC-----CCCCCEEEEEeCCCCCccCCeEE-----ecCCCCCeEEEEEEECCEEEEEE
Confidence 11112234456666666431 1124689999997654 5432 21110111112334478887776
Q ss_pred ccccccccCccceEEEEEEe-CceeEEEeccChhHHhccCCCCce--eEEeeCCCEEEEEeC---CCCeEEEEECCCCcE
Q 015511 302 GIGKQDRPDIIKGIGIWVLN-GKEWQEVARMPHKFFQGFGEFDDV--FASSGTDDLIYIQSY---GAPSLLVYDMNLKQW 375 (405)
Q Consensus 302 ~~~~~~~~~~~~~~~vw~l~-~~~W~~v~~i~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~---~~~~~~~Yd~~~~~w 375 (405)
..+ ....+|.++ ++. .+..++.. ....+ ++....++.+++... ....++.||+++++.
T Consensus 337 ~~d--------g~~~l~~~~~~g~--~~~~l~~~------~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 337 LKD--------ATSEVRVATLKGK--PVRTVQLP------GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EET--------TEEEEEEEETTCC--EEEECCCS------SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEC--------CEEEEEEEeCCCC--eeEEecCC------CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 432 235666665 222 22222210 00011 122235666665432 235789999999988
Q ss_pred EEccC
Q 015511 376 RWSHK 380 (405)
Q Consensus 376 ~~l~~ 380 (405)
+.+..
T Consensus 401 ~~l~~ 405 (695)
T 2bkl_A 401 ELWAK 405 (695)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 77653
No 213
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=25.36 E-value=3.2e+02 Score=23.33 Aligned_cols=184 Identities=11% Similarity=0.090 Sum_probs=85.2
Q ss_pred EecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEE
Q 015511 132 ASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIY 211 (405)
Q Consensus 132 ~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy 211 (405)
-+.+|-.++.+. ....+.+||..+++....-.. . ......+.+.+.. . .++.++. .-.+.+|
T Consensus 130 ~spdg~~l~~g~-~dg~v~i~~~~~~~~~~~~~~---~--~~~v~~~~~spdg-~--~lasg~~---------dg~i~iw 191 (321)
T 3ow8_A 130 FSPDSQYLATGT-HVGKVNIFGVESGKKEYSLDT---R--GKFILSIAYSPDG-K--YLASGAI---------DGIINIF 191 (321)
T ss_dssp ECTTSSEEEEEC-TTSEEEEEETTTCSEEEEEEC---S--SSCEEEEEECTTS-S--EEEEEET---------TSCEEEE
T ss_pred ECCCCCEEEEEc-CCCcEEEEEcCCCceeEEecC---C--CceEEEEEECCCC-C--EEEEEcC---------CCeEEEE
Confidence 344444444432 247788888887655432111 1 0112344555543 2 3333432 1268889
Q ss_pred eCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc-C
Q 015511 212 DSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC-G 288 (405)
Q Consensus 212 ~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~ 288 (405)
|..+++-... ..........+.+ +|.+.+.+.. ...|..||+.+..... .+...... .
T Consensus 192 d~~~~~~~~~----~~~h~~~v~~l~~spd~~~l~s~s~--------dg~i~iwd~~~~~~~~-------~~~~h~~~v~ 252 (321)
T 3ow8_A 192 DIATGKLLHT----LEGHAMPIRSLTFSPDSQLLVTASD--------DGYIKIYDVQHANLAG-------TLSGHASWVL 252 (321)
T ss_dssp ETTTTEEEEE----ECCCSSCCCEEEECTTSCEEEEECT--------TSCEEEEETTTCCEEE-------EECCCSSCEE
T ss_pred ECCCCcEEEE----EcccCCceeEEEEcCCCCEEEEEcC--------CCeEEEEECCCcceeE-------EEcCCCCceE
Confidence 9876542111 1111111223333 5555444432 2368899998765321 11111111 1
Q ss_pred ceEE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEE--eeCCCEEEEEeCCCCeE
Q 015511 289 RLMN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFAS--SGTDDLIYIQSYGAPSL 365 (405)
Q Consensus 289 ~l~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~ 365 (405)
.+.. -+|++++.++.+ ..+.+|++...+-. ..+.. ....+.++ ...+..|.... .+..+
T Consensus 253 ~~~~sp~~~~l~s~s~D--------~~v~iwd~~~~~~~--~~~~~-------h~~~v~~v~~s~~g~~l~s~~-~d~~i 314 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSSD--------KSVKVWDVGTRTCV--HTFFD-------HQDQVWGVKYNGNGSKIVSVG-DDQEI 314 (321)
T ss_dssp EEEECTTSSEEEEEETT--------SCEEEEETTTTEEE--EEECC-------CSSCEEEEEECTTSSEEEEEE-TTCCE
T ss_pred EEEECCCCCEEEEEeCC--------CcEEEEeCCCCEEE--EEEcC-------CCCcEEEEEECCCCCEEEEEe-CCCeE
Confidence 1222 256666555432 45999998765422 22211 01123333 34455555443 56678
Q ss_pred EEEEC
Q 015511 366 LVYDM 370 (405)
Q Consensus 366 ~~Yd~ 370 (405)
.+||.
T Consensus 315 ~vwd~ 319 (321)
T 3ow8_A 315 HIYDC 319 (321)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 88885
No 214
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=25.24 E-value=4.3e+02 Score=24.80 Aligned_cols=187 Identities=9% Similarity=-0.025 Sum_probs=0.0
Q ss_pred CceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCC
Q 015511 135 YGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSD 214 (405)
Q Consensus 135 ~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~ 214 (405)
+++++.... .....+||..|++.+.+...+. ..+.+.-|+. .|+........ ...+.++|..
T Consensus 122 ~~~~~~s~~--~~~~~l~d~~~g~~~~l~~~~~------~~~~~spDG~----~la~~~~~~~~------~~~i~~~d~~ 183 (582)
T 3o4h_A 122 EAVVFTGAT--EDRVALYALDGGGLRELARLPG------FGFVSDIRGD----LIAGLGFFGGG------RVSLFTSNLS 183 (582)
T ss_dssp SCEEEEEEC--SSCEEEEEEETTEEEEEEEESS------CEEEEEEETT----EEEEEEEEETT------EEEEEEEETT
T ss_pred CeEEEEecC--CCCceEEEccCCcEEEeecCCC------ceEEECCCCC----EEEEEEEcCCC------CeEEEEEcCC
Q ss_pred CCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCce--
Q 015511 215 TMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRL-- 290 (405)
Q Consensus 215 ~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l-- 290 (405)
++.++. ..........+.. +|+..+.....+. ..|..+|+.+.+ .....-.........
T Consensus 184 ~g~~~~-----l~~~~~~~~~~~~SpDG~~l~~~~~~~~------~~i~~~d~~~~~------~~~~~~~~~~~~~~~~~ 246 (582)
T 3o4h_A 184 SGGLRV-----FDSGEGSFSSASISPGMKVTAGLETARE------ARLVTVDPRDGS------VEDLELPSKDFSSYRPT 246 (582)
T ss_dssp TCCCEE-----ECCSSCEEEEEEECTTSCEEEEEECSSC------EEEEEECTTTCC------EEECCCSCSHHHHHCCS
T ss_pred CCCceE-----eecCCCccccceECCCCCEEEEccCCCe------eEEEEEcCCCCc------EEEccCCCcChhhhhhc
Q ss_pred ------EEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC--CC
Q 015511 291 ------MNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY--GA 362 (405)
Q Consensus 291 ------~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~ 362 (405)
..-+|+|++..... ..+.+|.+ ++... .+..... .+.+. .+..++.... ..
T Consensus 247 ~~~~~~~spdg~~~~~~~~~--------g~~~l~~~--g~~~~---~~~~~v~-------~~~~s-dg~~l~~~s~~~~p 305 (582)
T 3o4h_A 247 AITWLGYLPDGRLAVVARRE--------GRSAVFID--GERVE---APQGNHG-------RVVLW-RGKLVTSHTSLSTP 305 (582)
T ss_dssp EEEEEEECTTSCEEEEEEET--------TEEEEEET--TEEEC---CCSSEEE-------EEEEE-TTEEEEEEEETTEE
T ss_pred cccceeEcCCCcEEEEEEcC--------CcEEEEEE--CCeec---cCCCceE-------EEEec-CCEEEEEEcCCCCC
Q ss_pred CeEEEEECCCCcEEEc
Q 015511 363 PSLLVYDMNLKQWRWS 378 (405)
Q Consensus 363 ~~~~~Yd~~~~~w~~l 378 (405)
..++.+|+++ +.+.+
T Consensus 306 ~~l~~~d~~~-~~~~l 320 (582)
T 3o4h_A 306 PRIVSLPSGE-PLLEG 320 (582)
T ss_dssp EEEEEETTCC-EEECC
T ss_pred CeEEEEcCCC-ceEEE
No 215
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=24.83 E-value=3.2e+02 Score=23.23 Aligned_cols=155 Identities=17% Similarity=0.115 Sum_probs=75.9
Q ss_pred EEEec-CceEEEEeCC----------------CCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEE
Q 015511 130 FIASS-YGLVCFMDND----------------SRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIV 192 (405)
Q Consensus 130 ~~~s~-~Gll~~~~~~----------------~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~ 192 (405)
+.... +|.+++.+.. ....++++||.+++...+..-. . ..-++..++..+ .+++.
T Consensus 131 i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~--~----~p~gia~~~dg~--~lyv~ 202 (322)
T 2fp8_A 131 VTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKEL--H----VPGGAEVSADSS--FVLVA 202 (322)
T ss_dssp EEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEE--S----CCCEEEECTTSS--EEEEE
T ss_pred EEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCC--c----cCcceEECCCCC--EEEEE
Confidence 34445 6778776532 1256899999888765542110 0 112455554321 34544
Q ss_pred eeeccCCCccccceEEEEEeCCCCC---cccccccccccccCCCccEEE--CcEEEeeEEecCCC--CCCCccEEEEEEC
Q 015511 193 KSKQVTGNFFQWELSIHIYDSDTMM---WVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGG--APENRHGLISFNL 265 (405)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vy~s~~~~---W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~--~~~~~~~i~~fD~ 265 (405)
... ...+.+|+..... .+... . ... ...+.+ +|.+|+-....... .......|..||+
T Consensus 203 d~~---------~~~I~~~~~~~~~~~~~~~~~-~-~~g----P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~ 267 (322)
T 2fp8_A 203 EFL---------SHQIVKYWLEGPKKGTAEVLV-K-IPN----PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE 267 (322)
T ss_dssp EGG---------GTEEEEEESSSTTTTCEEEEE-E-CSS----EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT
T ss_pred eCC---------CCeEEEEECCCCcCCccceEE-e-CCC----CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC
Confidence 321 2378888876432 21111 1 011 123444 57776665321000 0001247999998
Q ss_pred CCCcchhhhcccccccCCcc--c-cCceEEeCCcEEEEEccccccccCccceEEEEEEe
Q 015511 266 SSRSSHALLIKSFIPVPCAL--T-CGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLN 321 (405)
Q Consensus 266 ~~~~w~~~~~~~~~~~p~~~--~-~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~ 321 (405)
..+... .+..|... . ...++..+|+||+.+.. ...+.++.++
T Consensus 268 ~G~~~~------~~~~~~g~~~~~~~~~~~~~g~L~v~~~~--------~~~i~~~~~~ 312 (322)
T 2fp8_A 268 FGNILE------VIPLPPPFAGEHFEQIQEHDGLLYIGTLF--------HGSVGILVYD 312 (322)
T ss_dssp TSCEEE------EEECCTTTTTSCCCEEEEETTEEEEECSS--------CSEEEEEEC-
T ss_pred CCCEEE------EEECCCCCccccceEEEEeCCEEEEeecC--------CCceEEEecc
Confidence 754422 23444321 1 22344568899987642 2447777665
No 216
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=24.68 E-value=3e+02 Score=22.83 Aligned_cols=53 Identities=6% Similarity=0.040 Sum_probs=28.2
Q ss_pred EEEEEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCc
Q 015511 207 SIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRS 269 (405)
Q Consensus 207 ~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~ 269 (405)
.+.+||..+++-...-. .........++.. +|...+.+... ..+..+|+.+.+
T Consensus 46 tV~iWd~~tg~~~~~~~--~~~~~~~V~~v~~~~~~~~l~sgs~D--------g~v~iw~~~~~~ 100 (318)
T 4ggc_A 46 SVYLWSASSGDILQLLQ--MEQPGEYISSVAWIKEGNYLAVGTSS--------AEVQLWDVQQQK 100 (318)
T ss_dssp EEEEEETTTCCEEEEEE--CCSTTCCEEEEEECTTSSEEEEEETT--------SEEEEEETTTTE
T ss_pred EEEEEECCCCCEEEEEE--ecCCCCeEEEEEECCCCCEEEEEECC--------CcEEEeecCCce
Confidence 78999988876533211 0000111122333 55555555332 478889998876
No 217
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=24.39 E-value=5e+02 Score=25.26 Aligned_cols=194 Identities=12% Similarity=0.079 Sum_probs=91.5
Q ss_pred ceEEEEeCccccee--eccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCC------C--
Q 015511 147 SELYVCNPISKSWK--KLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDT------M-- 216 (405)
Q Consensus 147 ~~~~v~NP~T~~~~--~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~------~-- 216 (405)
..+++++.-|++.. .+-..+. . . ........+++ +.|.++.... . ... ...+.+++..+ +
T Consensus 208 ~~v~~~~l~t~~~~~~~v~~~~~-~-~-~~~~~~~~SpD-g~~l~~~~~~-~--~~~---~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 208 QKLYYHVLGTDQSEDILCAEFPD-E-P-KWMGGAELSDD-GRYVLLSIRE-G--CDP---VNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp CEEEEEETTSCGGGCEEEECCTT-C-T-TCEEEEEECTT-SCEEEEEEEC-S--SSS---CCEEEEEEGGGSSSSSCSSC
T ss_pred CEEEEEECCCCcccceEEeccCC-C-C-eEEEEEEEcCC-CCEEEEEEEc-c--CCC---ccEEEEEECcccccccCCcc
Confidence 35899998887642 2211110 0 0 11233444444 3454444321 1 000 24778888755 3
Q ss_pred CcccccccccccccCCCccEEE-CcEEEeeEEecCCCCCCCccEEEEEECCCC---cchhhhcccccccCCccccCceEE
Q 015511 217 MWVTSWKEVLTGWRAGDESIIC-DGVLYFLIYATGGGAPENRHGLISFNLSSR---SSHALLIKSFIPVPCALTCGRLMN 292 (405)
Q Consensus 217 ~W~~~~~~~~~~~~~~~~~v~~-~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~---~w~~~~~~~~~~~p~~~~~~~l~~ 292 (405)
.++..... .......+.. ++.+|+.+... .....|..+|+.+. .|..+ ++-.....-..+..
T Consensus 278 ~~~~l~~~----~~~~~~~~s~dg~~l~~~s~~~-----~~~~~l~~~d~~~~~~~~~~~l-----~~~~~~~~~~~~~~ 343 (710)
T 2xdw_A 278 KWVKLIDN----FEGEYDYVTNEGTVFTFKTNRH-----SPNYRLINIDFTDPEESKWKVL-----VPEHEKDVLEWVAC 343 (710)
T ss_dssp CCEEEECS----SSSCEEEEEEETTEEEEEECTT-----CTTCEEEEEETTSCCGGGCEEE-----ECCCSSCEEEEEEE
T ss_pred ceEEeeCC----CCcEEEEEeccCCEEEEEECCC-----CCCCEEEEEeCCCCCcccceec-----cCCCCCCeEEEEEE
Confidence 45443211 1111112222 56788876321 22457999999775 35432 21111001112333
Q ss_pred e-CCcEEEEEccccccccCccceEEEEEEeCce-eEEEeccChhHHhccCCCCceeEE--eeCCCEEEEEeC---CCCeE
Q 015511 293 L-KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKE-WQEVARMPHKFFQGFGEFDDVFAS--SGTDDLIYIQSY---GAPSL 365 (405)
Q Consensus 293 ~-~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~-W~~v~~i~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~---~~~~~ 365 (405)
. +++|++..... ....+.+|.+.+++ ...+. .+. ..+.++ ...++.+++... ....+
T Consensus 344 ~~~~~lv~~~~~~------g~~~l~~~~~~~g~~~~~l~-~~~---------~~v~~~~~s~d~~~l~~~~ss~~~P~~i 407 (710)
T 2xdw_A 344 VRSNFLVLCYLHD------VKNTLQLHDLATGALLKIFP-LEV---------GSVVGYSGQKKDTEIFYQFTSFLSPGII 407 (710)
T ss_dssp ETTTEEEEEEEET------TEEEEEEEETTTCCEEEEEC-CCS---------SEEEEEECCTTCSEEEEEEECSSCCCEE
T ss_pred EcCCEEEEEEEEC------CEEEEEEEECCCCCEEEecC-CCC---------ceEEEEecCCCCCEEEEEEeCCCCCCEE
Confidence 4 66777665422 13345555553443 22221 221 112222 335666766532 35689
Q ss_pred EEEECCCCc--EEEccC
Q 015511 366 LVYDMNLKQ--WRWSHK 380 (405)
Q Consensus 366 ~~Yd~~~~~--w~~l~~ 380 (405)
+.||+.+++ .+.+..
T Consensus 408 ~~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 408 YHCDLTKEELEPRVFRE 424 (710)
T ss_dssp EEEETTSSSCCCEEEEE
T ss_pred EEEECCCCccceEEeee
Confidence 999999988 666543
No 218
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=23.86 E-value=4.2e+02 Score=24.16 Aligned_cols=114 Identities=14% Similarity=0.212 Sum_probs=57.1
Q ss_pred ccEEEC-----cEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCce-EEeCCcEEEEEcccccc
Q 015511 234 ESIICD-----GVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRL-MNLKEKLVMVGGIGKQD 307 (405)
Q Consensus 234 ~~v~~~-----g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l-~~~~G~L~~v~~~~~~~ 307 (405)
..+.++ |.||+.... ..|..+|+.+.....+ .. +.. ....+ +..+|+||+......
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~---------~~I~~id~~~g~v~~~-----~~-~~~-~P~giavd~dG~lyVad~~~~-- 203 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQR---------DAFRHVDFVNQYVDIK-----TT-NIG-QCADVNFTLNGDMVVVDDQSS-- 203 (433)
T ss_dssp CEEEECTTTTTCEEEEECBT---------SCEEEEETTTTEEEEE-----CC-CCS-CEEEEEECTTCCEEEEECCSC--
T ss_pred ceEEEccccCCCEEEEEeCC---------CCEEEEECCCCEEEEe-----ec-CCC-CccEEEECCCCCEEEEcCCCC--
Confidence 455565 899998531 5799999987775422 11 111 11123 344678888764221
Q ss_pred ccCccceEEEEEEe-CceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcE
Q 015511 308 RPDIIKGIGIWVLN-GKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQW 375 (405)
Q Consensus 308 ~~~~~~~~~vw~l~-~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w 375 (405)
...-.+..+. +..+.....++ .+. ...-+++...++.||+.......+..||+++++.
T Consensus 204 ----~~~~gv~~~~~~~~~~~~~~~~-----~~~-~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 204 ----DTNTGIYLFTRASGFTERLSLC-----NAR-GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp ----TTSEEEEEECGGGTTCCEEEEE-----ECS-SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred ----cccceEEEEECCCCeecccccc-----ccC-CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence 0112233333 23332111111 000 1122344444667777665556788888886665
No 219
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=23.36 E-value=4.3e+02 Score=24.16 Aligned_cols=114 Identities=9% Similarity=-0.003 Sum_probs=0.0
Q ss_pred CcEEEeeEEecCCCCCCCc----cEEEEEECCCCcchhhhcccccccCCccccCceEEeCC--cEEEEE----------c
Q 015511 239 DGVLYFLIYATGGGAPENR----HGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKE--KLVMVG----------G 302 (405)
Q Consensus 239 ~g~iy~l~~~~~~~~~~~~----~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G--~L~~v~----------~ 302 (405)
...+|+.. ... ..+..+|+.+.+ .....|..... .++..-+ .||+.. .
T Consensus 84 ~~~vyV~n--------~~~~~~~~~VsVID~~t~~-------vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~ 147 (426)
T 3c75_H 84 ARRVYIQD--------PAHFAAITQQFVIDGSTGR-------ILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKR 147 (426)
T ss_dssp TTEEEEEE--------CTTTCSSEEEEEEETTTTE-------EEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred CCEEEEEC--------CCcCCCCCeEEEEECCCCE-------EEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCC
Q ss_pred cccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-CCeEEEEECCCCcEEE
Q 015511 303 IGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-APSLLVYDMNLKQWRW 377 (405)
Q Consensus 303 ~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~Yd~~~~~w~~ 377 (405)
...+.+++....+=..--.++......-+....-+.+..+|+.+|+.+.. ...+.++|+.+++...
T Consensus 148 ---------~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~ 214 (426)
T 3c75_H 148 ---------TDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDR 214 (426)
T ss_dssp ---------EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred ---------CCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEE
No 220
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=23.27 E-value=3.5e+02 Score=23.13 Aligned_cols=65 Identities=11% Similarity=0.041 Sum_probs=35.1
Q ss_pred CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCcee--EEeeCCCEEEEEeCCCCeEEEEECC
Q 015511 294 KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVF--ASSGTDDLIYIQSYGAPSLLVYDMN 371 (405)
Q Consensus 294 ~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~Yd~~ 371 (405)
+|++++.++.+ ..+.+|++....-......+.. ...+. ++...+..+... ..+..+.+||..
T Consensus 237 ~~~~l~s~s~d--------~~v~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~s~~g~~l~~g-~~d~~i~vwd~~ 300 (340)
T 1got_B 237 NGNAFATGSDD--------ATCRLFDLRADQELMTYSHDNI-------ICGITSVSFSKSGRLLLAG-YDDFNCNVWDAL 300 (340)
T ss_dssp TSSEEEEEETT--------SCEEEEETTTTEEEEEECCTTC-------CSCEEEEEECTTSSEEEEE-ETTSEEEEEETT
T ss_pred CCCEEEEEcCC--------CcEEEEECCCCcEEEEEccCCc-------ccceEEEEECCCCCEEEEE-CCCCeEEEEEcc
Confidence 56776666532 4599999886542222211110 00122 233455555544 356789999987
Q ss_pred CCc
Q 015511 372 LKQ 374 (405)
Q Consensus 372 ~~~ 374 (405)
+++
T Consensus 301 ~~~ 303 (340)
T 1got_B 301 KAD 303 (340)
T ss_dssp TCC
T ss_pred cCc
Confidence 764
No 221
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=22.75 E-value=3.8e+02 Score=23.24 Aligned_cols=107 Identities=10% Similarity=0.007 Sum_probs=50.6
Q ss_pred cEEEEEECCCCcchhhhccccccc---C--CccccCceEE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEecc
Q 015511 258 HGLISFNLSSRSSHALLIKSFIPV---P--CALTCGRLMN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARM 331 (405)
Q Consensus 258 ~~i~~fD~~~~~w~~~~~~~~~~~---p--~~~~~~~l~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i 331 (405)
..+..||+.+.+-.. .+.. . .......+.. -+|++++++..+. ....+.+|++...+-.....-
T Consensus 207 g~i~i~d~~~~~~~~-----~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-----~~g~i~i~d~~~~~~~~~~~~ 276 (397)
T 1sq9_A 207 GTVQISELSTLRPLY-----NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-----SFGCITLYETEFGERIGSLSV 276 (397)
T ss_dssp SEEEEEETTTTEEEE-----EEECCC---CCCCCEEEEEECSSTTEEEEEEEET-----TEEEEEEEETTTCCEEEEECB
T ss_pred CcEEEEECCCCceeE-----EEeccccccccCCccceEEECCCCCEEEEEecCC-----CCceEEEEECCCCcccceecc
Confidence 479999998765321 1221 0 0111111222 2577766665310 014699999876532222111
Q ss_pred Ch---hHH-hccCCCCceeEE--eeCCCEEEEEeCCCCeEEEEECCCCcE
Q 015511 332 PH---KFF-QGFGEFDDVFAS--SGTDDLIYIQSYGAPSLLVYDMNLKQW 375 (405)
Q Consensus 332 ~~---~~~-~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~Yd~~~~~w 375 (405)
+. ... ..+.....+.++ ...++.++... .+..+.+||+++++-
T Consensus 277 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 277 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKTKER 325 (397)
T ss_dssp C--------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEE
T ss_pred CcccccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCce
Confidence 10 000 000011223333 34566655544 567899999988754
No 222
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=22.46 E-value=3.5e+02 Score=22.72 Aligned_cols=14 Identities=0% Similarity=-0.062 Sum_probs=9.8
Q ss_pred CceEEEEeCcccce
Q 015511 146 RSELYVCNPISKSW 159 (405)
Q Consensus 146 ~~~~~v~NP~T~~~ 159 (405)
++.+.|||..+.+.
T Consensus 60 D~~i~vWd~~~~~~ 73 (340)
T 4aow_A 60 DKTIIMWKLTRDET 73 (340)
T ss_dssp TSCEEEEEECCSSS
T ss_pred CCeEEEEECCCCCc
Confidence 36788898776543
No 223
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=22.37 E-value=2.9e+02 Score=24.50 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=19.7
Q ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEE
Q 015511 351 TDDLIYIQSYGAPSLLVYDMNLKQWRW 377 (405)
Q Consensus 351 ~~~~i~~~~~~~~~~~~Yd~~~~~w~~ 377 (405)
.++.||+-.. ...+++.|+++++-.+
T Consensus 110 ~~g~Vy~Gs~-~g~l~ald~~tG~~~W 135 (339)
T 2be1_A 110 EDEKVYTGSM-RTIMYTINMLNGEIIS 135 (339)
T ss_dssp CCEEEEECEE-EEEEEEEETTTCCEEE
T ss_pred cCCEEEEEec-CCEEEEEECCCCcEEE
Confidence 5778888653 5689999999996544
No 224
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=21.35 E-value=3.6e+02 Score=23.36 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=30.5
Q ss_pred eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCC
Q 015511 293 LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNL 372 (405)
Q Consensus 293 ~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~ 372 (405)
-+|+++.++.. ..+.||.++..+-........ -..+.+...++.+.+....+..+.+||.++
T Consensus 29 ~dg~~la~g~~---------~~~~iw~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 29 QDQSCLILSTL---------KSFEIYNVHPVAHIMSQEMRH---------LSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp TTSSEEEEECS---------SEEEEEEETTEEEEEEEECSC---------CCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred CCCCEEEEEcC---------CEEEEEecCCcceeeeeecCC---------eEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 35776666542 236799887543222111110 012223334445544443445666666665
Q ss_pred Cc
Q 015511 373 KQ 374 (405)
Q Consensus 373 ~~ 374 (405)
++
T Consensus 91 ~~ 92 (355)
T 3vu4_A 91 KQ 92 (355)
T ss_dssp TE
T ss_pred Cc
Confidence 54
No 225
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=20.31 E-value=6.2e+02 Score=24.84 Aligned_cols=180 Identities=9% Similarity=-0.029 Sum_probs=0.0
Q ss_pred eEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCC
Q 015511 106 GYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSH 185 (405)
Q Consensus 106 ~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~ 185 (405)
...||+..++... +..........+...+|-|.+... ..++.+|+.+++...+....... .......+..|...
T Consensus 84 l~~yd~~~~~f~~-~~~~~~~~i~~i~~~~g~lWigt~---~Gl~~~~~~~~~~~~~~~~~~~l-~~~~i~~i~~d~~g- 157 (758)
T 3ott_A 84 ILVYNYRADRYEQ-PETDFPTDVRTMALQGDTLWLGAL---NGLYTYQLQSRKLTSFDTRRNGL-PNNTIYSIIRTKDN- 157 (758)
T ss_dssp EEEEETTTTEECC-CSCCCCSCEEEEEEETTEEEEEET---TEEEEEETTTCCEEEECHHHHCC-SCSCEEEEEECTTC-
T ss_pred eEEEeCCCCEEEC-cccCCCceEEEEEecCCcEEEEcC---CcceeEeCCCCeEEEeccCCCCc-CCCeEEEEEEcCCC-
Q ss_pred cEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCC-CccEEEC--cEEEeeEEecCCCCCCCccEEEE
Q 015511 186 RYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAG-DESIICD--GVLYFLIYATGGGAPENRHGLIS 262 (405)
Q Consensus 186 ~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~-~~~v~~~--g~iy~l~~~~~~~~~~~~~~i~~ 262 (405)
.+.+.. ...+..|+..++.......+........ ..+++.+ |...|++... .+..
T Consensus 158 --~lWigt-----------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~---------Gl~~ 215 (758)
T 3ott_A 158 --QIYVGT-----------YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG---------YLFQ 215 (758)
T ss_dssp --CEEEEE-----------TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEE---------EEEE
T ss_pred --CEEEEe-----------CCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECC---------CCeE
Q ss_pred EECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEE
Q 015511 263 FNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEV 328 (405)
Q Consensus 263 fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v 328 (405)
||+.+.++. .....+......-+...+|.|.+.+..+ +.++..+...+..+
T Consensus 216 ~~~~~~~~~-----~~~~l~~~~i~~i~~d~~g~lWigT~~G----------l~~~~~~~~~~~~~ 266 (758)
T 3ott_A 216 YFPSTGQIK-----QTEAFHNNSIKSLALDGNGDLLAGTDNG----------LYVYHNDTTPLQHI 266 (758)
T ss_dssp EETTTTEEE-----EEEEEEEEEEEEEEECTTCCEEEEETTE----------EEEECCTTSCCEEE
T ss_pred EcCCCCeEE-----eccCCCCCeEEEEEEcCCCCEEEEeCCc----------eeEEecCCCcEEEE
Done!