Query 015513
Match_columns 405
No_of_seqs 310 out of 2118
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:01:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 8.9E-27 1.9E-31 255.6 26.6 281 91-387 11-312 (2102)
2 PLN03200 cellulose synthase-in 100.0 1.4E-26 3E-31 254.1 26.9 280 92-388 445-765 (2102)
3 KOG4224 Armadillo repeat prote 99.9 8.2E-25 1.8E-29 199.6 16.2 278 93-388 167-447 (550)
4 KOG0166 Karyopherin (importin) 99.9 1.1E-23 2.4E-28 204.4 23.5 279 92-386 108-392 (514)
5 KOG0166 Karyopherin (importin) 99.9 1.6E-23 3.5E-28 203.2 20.1 304 72-388 130-437 (514)
6 KOG4224 Armadillo repeat prote 99.9 1.2E-23 2.6E-28 192.0 16.8 274 93-386 126-404 (550)
7 COG5064 SRP1 Karyopherin (impo 99.9 5.6E-23 1.2E-27 186.2 16.0 305 69-387 132-443 (526)
8 COG5064 SRP1 Karyopherin (impo 99.9 1.7E-22 3.6E-27 183.2 15.9 280 92-387 70-356 (526)
9 PF04564 U-box: U-box domain; 99.9 1.1E-22 2.3E-27 149.7 4.9 72 6-79 1-72 (73)
10 PF05804 KAP: Kinesin-associat 99.8 2.8E-16 6.2E-21 160.8 27.7 256 106-386 264-519 (708)
11 smart00504 Ubox Modified RING 99.7 3.4E-18 7.4E-23 122.7 5.3 63 9-74 1-63 (63)
12 PF05804 KAP: Kinesin-associat 99.7 7.5E-16 1.6E-20 157.7 24.4 216 153-389 265-481 (708)
13 KOG4199 Uncharacterized conser 99.6 2.9E-13 6.3E-18 123.4 25.6 280 91-385 143-442 (461)
14 KOG2122 Beta-catenin-binding p 99.6 1.1E-13 2.5E-18 144.6 20.0 268 109-386 316-601 (2195)
15 KOG4199 Uncharacterized conser 99.6 1.2E-12 2.5E-17 119.5 22.2 269 106-388 122-404 (461)
16 PF04826 Arm_2: Armadillo-like 99.5 1.7E-12 3.8E-17 118.5 18.4 197 182-392 13-210 (254)
17 PF04826 Arm_2: Armadillo-like 99.5 2.4E-12 5.3E-17 117.6 18.9 195 90-301 9-206 (254)
18 KOG1048 Neural adherens juncti 99.5 1.3E-12 2.8E-17 131.5 18.5 288 93-393 233-601 (717)
19 PF15227 zf-C3HC4_4: zinc fing 99.5 3.8E-14 8.3E-19 91.8 2.8 40 12-51 1-42 (42)
20 KOG1048 Neural adherens juncti 99.4 7.4E-12 1.6E-16 126.1 14.2 196 182-387 234-452 (717)
21 TIGR00599 rad18 DNA repair pro 99.3 4.5E-12 9.8E-17 121.3 6.4 70 5-77 22-91 (397)
22 PLN03208 E3 ubiquitin-protein 99.3 3.9E-12 8.5E-17 108.7 4.2 61 5-66 14-88 (193)
23 KOG2122 Beta-catenin-binding p 99.2 7.5E-11 1.6E-15 124.1 13.9 228 106-346 366-605 (2195)
24 cd00020 ARM Armadillo/beta-cat 99.2 6.9E-11 1.5E-15 95.6 9.6 115 176-300 4-120 (120)
25 cd00020 ARM Armadillo/beta-cat 99.2 1.4E-10 3E-15 93.9 10.5 114 226-341 5-119 (120)
26 PF10508 Proteasom_PSMB: Prote 99.2 2.3E-08 5E-13 101.2 28.3 292 94-399 78-438 (503)
27 PF11789 zf-Nse: Zinc-finger o 99.1 2E-11 4.3E-16 84.3 1.7 44 9-52 11-55 (57)
28 PF10508 Proteasom_PSMB: Prote 99.1 1.6E-08 3.4E-13 102.4 22.7 252 94-369 4-255 (503)
29 KOG4500 Rho/Rac GTPase guanine 99.1 3E-08 6.5E-13 93.7 22.3 259 118-389 250-521 (604)
30 KOG4500 Rho/Rac GTPase guanine 99.1 4.5E-08 9.9E-13 92.6 22.0 290 90-387 84-390 (604)
31 PF13923 zf-C3HC4_2: Zinc fing 99.1 9.7E-11 2.1E-15 74.9 2.6 38 12-51 1-39 (39)
32 PF13445 zf-RING_UBOX: RING-ty 99.0 8.5E-11 1.9E-15 75.9 2.1 37 12-49 1-43 (43)
33 PF03224 V-ATPase_H_N: V-ATPas 99.0 6.1E-08 1.3E-12 92.4 22.1 260 113-382 32-309 (312)
34 KOG1222 Kinesin associated pro 99.0 1.5E-08 3.2E-13 96.9 16.1 194 154-364 280-474 (791)
35 PF00097 zf-C3HC4: Zinc finger 99.0 3.8E-10 8.3E-15 73.1 2.8 40 12-51 1-41 (41)
36 KOG0946 ER-Golgi vesicle-tethe 98.9 3.7E-07 7.9E-12 92.2 22.9 290 85-388 14-348 (970)
37 KOG0287 Postreplication repair 98.9 7.8E-10 1.7E-14 100.5 2.4 67 8-77 22-88 (442)
38 PF14835 zf-RING_6: zf-RING of 98.8 8.3E-10 1.8E-14 76.1 1.2 59 8-71 6-65 (65)
39 PRK09687 putative lyase; Provi 98.8 5.3E-07 1.1E-11 84.2 20.3 211 105-383 68-278 (280)
40 PF13920 zf-C3HC4_3: Zinc fing 98.8 2.7E-09 5.9E-14 72.3 2.7 47 8-56 1-48 (50)
41 KOG1222 Kinesin associated pro 98.8 8.9E-07 1.9E-11 85.0 20.2 257 92-373 259-520 (791)
42 KOG0168 Putative ubiquitin fus 98.8 1.3E-06 2.7E-11 89.0 22.1 256 92-367 166-436 (1051)
43 PF03224 V-ATPase_H_N: V-ATPas 98.8 1.2E-07 2.6E-12 90.4 14.3 219 94-323 59-292 (312)
44 PHA02929 N1R/p28-like protein; 98.8 5.7E-09 1.2E-13 93.4 4.3 49 6-56 171-227 (238)
45 KOG4642 Chaperone-dependent E3 98.8 6.6E-09 1.4E-13 91.2 4.2 76 3-80 205-280 (284)
46 KOG0823 Predicted E3 ubiquitin 98.7 7.9E-09 1.7E-13 90.1 2.8 58 8-66 46-104 (230)
47 PF13639 zf-RING_2: Ring finge 98.7 6.2E-09 1.3E-13 68.5 1.5 40 11-52 2-44 (44)
48 KOG0320 Predicted E3 ubiquitin 98.7 1.1E-08 2.5E-13 85.1 3.3 50 9-61 131-182 (187)
49 COG5432 RAD18 RING-finger-cont 98.7 1.2E-08 2.7E-13 90.8 3.0 67 8-77 24-90 (391)
50 KOG2177 Predicted E3 ubiquitin 98.6 2.3E-08 4.9E-13 95.6 4.1 68 6-78 10-77 (386)
51 KOG2160 Armadillo/beta-catenin 98.6 2.2E-06 4.7E-11 80.2 16.8 184 105-300 97-282 (342)
52 cd00162 RING RING-finger (Real 98.6 3.8E-08 8.2E-13 64.8 3.7 43 11-54 1-44 (45)
53 KOG0317 Predicted E3 ubiquitin 98.6 2.8E-08 6E-13 89.3 3.8 50 6-57 236-285 (293)
54 cd00256 VATPase_H VATPase_H, r 98.6 2.8E-05 6E-10 76.2 24.4 256 132-399 52-320 (429)
55 PRK09687 putative lyase; Provi 98.6 4.5E-06 9.8E-11 78.0 18.0 196 134-387 55-250 (280)
56 smart00184 RING Ring finger. E 98.5 8.7E-08 1.9E-12 60.8 3.3 39 12-51 1-39 (39)
57 PHA02926 zinc finger-like prot 98.5 9.2E-08 2E-12 82.8 3.7 52 5-56 166-230 (242)
58 cd00256 VATPase_H VATPase_H, r 98.5 6.2E-05 1.3E-09 73.7 23.1 280 95-389 103-428 (429)
59 KOG2160 Armadillo/beta-catenin 98.5 9.8E-06 2.1E-10 75.9 16.7 194 197-397 95-293 (342)
60 KOG0168 Putative ubiquitin fus 98.4 1.6E-05 3.5E-10 81.2 18.2 203 154-368 185-391 (1051)
61 PF14634 zf-RING_5: zinc-RING 98.4 2.9E-07 6.4E-12 60.3 2.9 41 11-53 1-44 (44)
62 TIGR00570 cdk7 CDK-activating 98.4 6.4E-07 1.4E-11 82.7 6.1 49 8-57 2-55 (309)
63 PRK13800 putative oxidoreducta 98.3 7.1E-05 1.5E-09 81.4 22.0 229 92-385 620-865 (897)
64 PRK13800 putative oxidoreducta 98.3 0.00025 5.5E-09 77.1 25.0 150 185-383 746-895 (897)
65 KOG2042 Ubiquitin fusion degra 98.3 1.1E-06 2.3E-11 91.8 5.9 73 4-79 865-938 (943)
66 COG5222 Uncharacterized conser 98.3 1.2E-06 2.7E-11 78.6 5.3 67 10-77 275-342 (427)
67 KOG2171 Karyopherin (importin) 98.2 0.00056 1.2E-08 72.7 25.1 270 106-389 174-506 (1075)
68 KOG0311 Predicted E3 ubiquitin 98.2 2.6E-07 5.6E-12 85.1 -0.3 68 6-74 40-108 (381)
69 PF05536 Neurochondrin: Neuroc 98.1 0.00035 7.6E-09 71.3 20.5 244 134-388 6-262 (543)
70 PF00514 Arm: Armadillo/beta-c 98.1 1.7E-06 3.6E-11 55.9 2.4 40 260-300 2-41 (41)
71 KOG4646 Uncharacterized conser 98.1 5.9E-05 1.3E-09 60.8 11.2 134 226-363 14-147 (173)
72 COG5574 PEX10 RING-finger-cont 98.1 2E-06 4.4E-11 76.5 3.1 50 7-57 213-263 (271)
73 KOG0946 ER-Golgi vesicle-tethe 98.1 0.00029 6.2E-09 71.9 18.3 221 133-368 22-265 (970)
74 PF12678 zf-rbx1: RING-H2 zinc 98.1 3.2E-06 7E-11 61.9 3.4 39 12-52 22-73 (73)
75 KOG0978 E3 ubiquitin ligase in 98.0 1.8E-06 3.9E-11 87.7 2.2 53 9-63 643-695 (698)
76 KOG0289 mRNA splicing factor [ 98.0 4E-05 8.6E-10 72.8 10.8 77 10-104 1-78 (506)
77 KOG2164 Predicted E3 ubiquitin 98.0 4.4E-06 9.5E-11 81.1 3.4 72 7-79 184-262 (513)
78 KOG1293 Proteins containing ar 98.0 0.00074 1.6E-08 67.8 18.6 145 197-345 389-536 (678)
79 PF05536 Neurochondrin: Neuroc 98.0 0.00019 4.2E-09 73.2 15.0 154 182-345 6-171 (543)
80 KOG2660 Locus-specific chromos 98.0 2.8E-06 6.1E-11 78.0 1.6 66 6-74 12-82 (331)
81 KOG0297 TNF receptor-associate 97.9 8.3E-06 1.8E-10 79.7 3.8 66 6-74 18-85 (391)
82 COG5113 UFD2 Ubiquitin fusion 97.9 1.8E-05 3.8E-10 78.3 5.7 73 4-79 849-922 (929)
83 KOG4159 Predicted E3 ubiquitin 97.9 9.2E-06 2E-10 78.4 3.6 71 4-76 79-153 (398)
84 KOG4646 Uncharacterized conser 97.9 0.00015 3.2E-09 58.6 9.6 132 182-325 17-149 (173)
85 PF13646 HEAT_2: HEAT repeats; 97.8 0.00015 3.3E-09 55.0 8.7 88 183-296 1-88 (88)
86 KOG2171 Karyopherin (importin) 97.8 0.006 1.3E-07 65.2 22.4 252 106-376 264-535 (1075)
87 PF00514 Arm: Armadillo/beta-c 97.8 5.4E-05 1.2E-09 48.7 4.7 40 169-214 2-41 (41)
88 KOG2734 Uncharacterized conser 97.7 0.015 3.2E-07 56.2 22.5 249 109-367 102-371 (536)
89 KOG1293 Proteins containing ar 97.7 0.0016 3.5E-08 65.4 16.4 154 103-268 389-544 (678)
90 PF01602 Adaptin_N: Adaptin N 97.7 0.0049 1.1E-07 63.1 20.4 166 62-258 53-221 (526)
91 KOG3678 SARM protein (with ste 97.7 0.0011 2.4E-08 64.1 14.1 247 126-388 173-453 (832)
92 PF01602 Adaptin_N: Adaptin N 97.6 0.018 3.9E-07 59.0 22.9 135 151-308 206-340 (526)
93 PF12861 zf-Apc11: Anaphase-pr 97.6 7.3E-05 1.6E-09 55.4 3.5 47 10-56 33-82 (85)
94 PTZ00429 beta-adaptin; Provisi 97.6 0.034 7.4E-07 58.8 24.5 177 92-301 31-209 (746)
95 KOG0824 Predicted E3 ubiquitin 97.6 4.4E-05 9.6E-10 69.2 2.6 47 10-57 8-54 (324)
96 KOG1789 Endocytosis protein RM 97.5 0.065 1.4E-06 57.0 25.0 250 104-369 1785-2142(2235)
97 PF14664 RICTOR_N: Rapamycin-i 97.5 0.026 5.7E-07 54.9 21.4 265 105-385 39-362 (371)
98 KOG2879 Predicted E3 ubiquitin 97.4 8.9E-05 1.9E-09 66.4 3.0 49 8-56 238-287 (298)
99 KOG1002 Nucleotide excision re 97.4 0.00011 2.3E-09 71.3 3.8 49 9-57 536-587 (791)
100 smart00185 ARM Armadillo/beta- 97.4 0.00025 5.5E-09 45.2 3.8 39 260-299 2-40 (41)
101 KOG1813 Predicted E3 ubiquitin 97.4 0.00011 2.4E-09 66.5 2.7 58 10-71 242-299 (313)
102 KOG0802 E3 ubiquitin ligase [P 97.3 7.5E-05 1.6E-09 76.5 1.6 45 9-55 291-340 (543)
103 PF14664 RICTOR_N: Rapamycin-i 97.3 0.033 7.1E-07 54.2 19.5 253 114-387 6-269 (371)
104 KOG4628 Predicted E3 ubiquitin 97.3 0.00013 2.8E-09 68.8 2.7 47 10-57 230-279 (348)
105 COG5369 Uncharacterized conser 97.3 0.0024 5.3E-08 62.8 10.9 189 110-310 408-604 (743)
106 PF04641 Rtf2: Rtf2 RING-finge 97.3 0.0002 4.2E-09 66.3 3.4 52 7-62 111-166 (260)
107 KOG2973 Uncharacterized conser 97.3 0.073 1.6E-06 49.3 19.7 216 94-325 45-296 (353)
108 KOG2973 Uncharacterized conser 97.3 0.0092 2E-07 55.0 13.9 187 183-384 5-201 (353)
109 KOG2734 Uncharacterized conser 97.3 0.12 2.6E-06 50.1 21.7 243 92-343 124-401 (536)
110 PF12348 CLASP_N: CLASP N term 97.2 0.0037 8E-08 56.6 11.3 178 105-302 21-208 (228)
111 KOG2759 Vacuolar H+-ATPase V1 97.2 0.028 6.1E-07 54.0 17.0 208 183-399 116-333 (442)
112 TIGR02270 conserved hypothetic 97.2 0.046 1E-06 53.9 19.2 203 134-388 87-297 (410)
113 KOG3039 Uncharacterized conser 97.2 0.00029 6.2E-09 62.0 3.0 54 7-63 219-276 (303)
114 PF12348 CLASP_N: CLASP N term 97.2 0.0075 1.6E-07 54.6 12.5 186 197-391 19-210 (228)
115 COG5152 Uncharacterized conser 97.2 0.00016 3.5E-09 61.4 1.3 44 10-55 197-240 (259)
116 KOG2979 Protein involved in DN 97.1 0.00045 9.8E-09 61.6 3.9 64 10-73 177-244 (262)
117 KOG4367 Predicted Zn-finger pr 97.1 0.00015 3.3E-09 68.7 1.0 35 7-41 2-36 (699)
118 KOG3678 SARM protein (with ste 97.1 0.017 3.8E-07 56.1 14.6 235 92-341 179-451 (832)
119 COG5243 HRD1 HRD ubiquitin lig 97.1 0.00038 8.3E-09 64.9 3.0 47 7-55 285-344 (491)
120 PF13646 HEAT_2: HEAT repeats; 97.0 0.0039 8.4E-08 47.1 7.9 88 135-254 1-88 (88)
121 KOG2023 Nuclear transport rece 97.0 0.089 1.9E-06 53.5 19.1 275 92-390 127-466 (885)
122 KOG3039 Uncharacterized conser 97.0 0.00046 9.9E-09 60.8 2.7 38 5-42 39-76 (303)
123 PF10165 Ric8: Guanine nucleot 97.0 0.077 1.7E-06 53.1 18.7 270 111-387 1-337 (446)
124 KOG2759 Vacuolar H+-ATPase V1 96.8 0.12 2.6E-06 49.8 17.5 224 106-341 172-437 (442)
125 TIGR02270 conserved hypothetic 96.8 0.17 3.6E-06 50.0 19.0 118 182-339 87-204 (410)
126 KOG1789 Endocytosis protein RM 96.8 0.03 6.5E-07 59.5 14.0 139 244-387 1740-1883(2235)
127 KOG0804 Cytoplasmic Zn-finger 96.8 0.00041 8.9E-09 66.4 0.6 42 11-56 177-222 (493)
128 PF11841 DUF3361: Domain of un 96.7 0.035 7.6E-07 46.8 11.7 128 226-354 9-142 (160)
129 PF13513 HEAT_EZ: HEAT-like re 96.7 0.0019 4.1E-08 44.3 3.5 55 243-298 1-55 (55)
130 PTZ00429 beta-adaptin; Provisi 96.7 0.86 1.9E-05 48.5 24.6 148 135-300 138-285 (746)
131 smart00185 ARM Armadillo/beta- 96.6 0.0032 6.9E-08 40.0 4.0 38 170-213 3-40 (41)
132 PF10165 Ric8: Guanine nucleot 96.6 0.91 2E-05 45.5 23.0 235 105-343 46-338 (446)
133 KOG3113 Uncharacterized conser 96.6 0.0014 3E-08 58.1 2.5 54 7-64 109-166 (293)
134 KOG3036 Protein involved in ce 96.6 0.2 4.3E-06 45.0 15.7 155 106-268 94-257 (293)
135 COG1413 FOG: HEAT repeat [Ener 96.5 0.16 3.5E-06 48.8 16.9 155 133-342 43-209 (335)
136 PF13513 HEAT_EZ: HEAT-like re 96.5 0.0044 9.5E-08 42.4 4.1 54 200-256 2-55 (55)
137 KOG0826 Predicted E3 ubiquitin 96.4 0.0021 4.5E-08 59.2 2.7 48 7-56 298-346 (357)
138 PF09759 Atx10homo_assoc: Spin 96.4 0.011 2.3E-07 46.0 6.0 69 108-178 3-71 (102)
139 PF02891 zf-MIZ: MIZ/SP-RING z 96.3 0.0039 8.5E-08 41.8 2.8 46 9-54 2-50 (50)
140 KOG2023 Nuclear transport rece 96.2 0.052 1.1E-06 55.1 11.4 177 132-321 127-307 (885)
141 KOG4413 26S proteasome regulat 96.2 0.81 1.8E-05 43.0 18.1 225 105-343 142-378 (524)
142 KOG1242 Protein containing ada 96.2 0.33 7.1E-06 49.1 16.7 172 198-388 267-446 (569)
143 COG5240 SEC21 Vesicle coat com 96.1 1.5 3.3E-05 44.2 20.5 236 135-387 262-555 (898)
144 KOG1645 RING-finger-containing 96.1 0.0029 6.3E-08 60.0 1.9 60 10-70 5-69 (463)
145 KOG1242 Protein containing ada 96.0 0.45 9.8E-06 48.1 16.7 251 106-392 149-406 (569)
146 smart00744 RINGv The RING-vari 95.9 0.0086 1.9E-07 40.0 3.1 42 11-52 1-49 (49)
147 KOG1241 Karyopherin (importin) 95.9 0.11 2.4E-06 53.6 12.3 198 133-346 319-534 (859)
148 KOG0212 Uncharacterized conser 95.8 2 4.3E-05 43.3 20.0 196 181-387 208-406 (675)
149 PF11841 DUF3361: Domain of un 95.8 0.11 2.5E-06 43.7 9.8 125 127-258 5-131 (160)
150 COG5194 APC11 Component of SCF 95.7 0.0095 2.1E-07 43.0 2.7 43 11-55 33-80 (88)
151 KOG1039 Predicted E3 ubiquitin 95.7 0.0064 1.4E-07 57.8 2.4 49 7-55 159-220 (344)
152 PF04078 Rcd1: Cell differenti 95.6 0.48 1E-05 43.2 13.8 155 106-268 65-228 (262)
153 COG5369 Uncharacterized conser 95.6 0.68 1.5E-05 46.2 15.6 186 159-355 411-605 (743)
154 KOG1734 Predicted RING-contain 95.5 0.0031 6.8E-08 56.4 -0.5 48 9-56 224-281 (328)
155 KOG1517 Guanine nucleotide bin 95.5 0.33 7.1E-06 52.0 13.9 196 95-301 474-672 (1387)
156 KOG1785 Tyrosine kinase negati 95.4 0.0062 1.3E-07 57.5 1.3 47 11-57 371-417 (563)
157 KOG0213 Splicing factor 3b, su 95.4 1.4 3E-05 45.8 17.7 257 105-397 813-1075(1172)
158 KOG1517 Guanine nucleotide bin 95.4 0.28 6.1E-06 52.5 13.1 202 177-387 510-732 (1387)
159 KOG2817 Predicted E3 ubiquitin 95.3 0.011 2.4E-07 56.2 2.7 43 10-53 335-382 (394)
160 KOG4413 26S proteasome regulat 95.3 1.4 3.1E-05 41.4 15.9 201 176-389 125-335 (524)
161 PF04078 Rcd1: Cell differenti 95.2 0.5 1.1E-05 43.1 12.7 208 98-309 2-227 (262)
162 COG5627 MMS21 DNA repair prote 95.2 0.015 3.2E-07 51.2 2.7 57 10-67 190-249 (275)
163 PF14668 RICTOR_V: Rapamycin-i 95.1 0.14 3E-06 37.2 7.2 65 245-309 3-67 (73)
164 KOG1062 Vesicle coat complex A 95.0 2.6 5.5E-05 44.2 18.3 106 133-258 103-208 (866)
165 PF14570 zf-RING_4: RING/Ubox 95.0 0.024 5.2E-07 37.3 2.6 43 12-55 1-47 (48)
166 PF04063 DUF383: Domain of unk 95.0 0.24 5.2E-06 43.5 9.7 126 154-280 12-157 (192)
167 COG5096 Vesicle coat complex, 95.0 1 2.2E-05 47.5 15.7 103 182-300 93-195 (757)
168 KOG0825 PHD Zn-finger protein 94.9 0.0056 1.2E-07 62.5 -0.6 46 10-57 124-172 (1134)
169 PF09759 Atx10homo_assoc: Spin 94.9 0.072 1.6E-06 41.5 5.5 63 246-308 3-68 (102)
170 KOG2611 Neurochondrin/leucine- 94.9 0.73 1.6E-05 45.4 13.3 140 186-335 16-173 (698)
171 KOG3036 Protein involved in ce 94.8 3.1 6.7E-05 37.6 20.7 214 91-309 24-256 (293)
172 PF12755 Vac14_Fab1_bd: Vacuol 94.7 0.2 4.3E-06 38.8 7.7 68 227-299 26-95 (97)
173 KOG4172 Predicted E3 ubiquitin 94.7 0.01 2.2E-07 39.5 0.3 45 10-55 8-53 (62)
174 PF06371 Drf_GBD: Diaphanous G 94.7 0.59 1.3E-05 40.6 11.7 116 92-213 65-186 (187)
175 COG1413 FOG: HEAT repeat [Ener 94.5 2.2 4.7E-05 40.9 16.1 90 182-298 44-133 (335)
176 KOG2259 Uncharacterized conser 94.5 0.23 5E-06 50.5 9.3 234 135-404 236-496 (823)
177 KOG1493 Anaphase-promoting com 94.5 0.016 3.4E-07 41.5 0.9 49 7-55 29-80 (84)
178 COG5181 HSH155 U2 snRNP splice 94.3 3.3 7.1E-05 42.3 16.7 253 97-388 608-871 (975)
179 KOG1241 Karyopherin (importin) 94.3 4.4 9.5E-05 42.4 17.8 258 104-388 187-478 (859)
180 PF13764 E3_UbLigase_R4: E3 ub 94.2 4.7 0.0001 43.2 18.9 78 226-303 317-409 (802)
181 KOG1062 Vesicle coat complex A 94.2 6.5 0.00014 41.4 19.1 172 106-308 249-424 (866)
182 PF12717 Cnd1: non-SMC mitotic 94.1 1.7 3.7E-05 37.6 13.2 93 198-301 1-93 (178)
183 KOG3800 Predicted E3 ubiquitin 94.1 0.037 8.1E-07 50.4 2.8 46 11-57 2-52 (300)
184 KOG4692 Predicted E3 ubiquitin 94.1 0.032 6.9E-07 52.0 2.2 47 8-56 421-467 (489)
185 KOG1077 Vesicle coat complex A 93.9 6.2 0.00013 41.0 17.9 104 182-300 330-433 (938)
186 PF11698 V-ATPase_H_C: V-ATPas 93.9 0.36 7.7E-06 38.7 7.6 72 181-257 43-114 (119)
187 KOG0827 Predicted E3 ubiquitin 93.9 0.046 1E-06 51.7 2.9 50 8-57 3-57 (465)
188 KOG2999 Regulator of Rac1, req 93.7 1.8 3.9E-05 43.5 13.5 167 182-355 84-254 (713)
189 PF11793 FANCL_C: FANCL C-term 93.5 0.017 3.7E-07 41.8 -0.4 48 9-56 2-66 (70)
190 KOG1248 Uncharacterized conser 93.5 8.4 0.00018 42.3 19.0 219 151-388 668-899 (1176)
191 PF12755 Vac14_Fab1_bd: Vacuol 93.5 0.53 1.1E-05 36.4 7.8 67 182-256 28-94 (97)
192 KOG1001 Helicase-like transcri 93.5 0.033 7.2E-07 58.1 1.4 46 10-56 455-500 (674)
193 PF02985 HEAT: HEAT repeat; I 93.4 0.14 3.1E-06 30.3 3.6 29 229-258 1-29 (31)
194 COG5231 VMA13 Vacuolar H+-ATPa 93.2 7.6 0.00017 36.6 18.0 223 154-385 166-426 (432)
195 COG5109 Uncharacterized conser 93.1 0.053 1.1E-06 49.9 2.0 45 9-53 336-384 (396)
196 KOG1077 Vesicle coat complex A 93.1 6.1 0.00013 41.0 16.3 216 108-343 166-399 (938)
197 COG5175 MOT2 Transcriptional r 92.7 0.079 1.7E-06 49.2 2.5 46 11-57 16-65 (480)
198 PF05004 IFRD: Interferon-rela 92.6 9.7 0.00021 36.2 18.6 191 95-299 45-256 (309)
199 PF04063 DUF383: Domain of unk 92.6 1.6 3.4E-05 38.3 10.4 122 243-367 9-157 (192)
200 PF08045 CDC14: Cell division 92.5 1.4 2.9E-05 40.5 10.2 95 244-340 106-205 (257)
201 KOG0396 Uncharacterized conser 92.4 0.1 2.2E-06 49.3 2.8 48 9-57 330-380 (389)
202 COG5218 YCG1 Chromosome conden 92.3 9.8 0.00021 38.8 16.3 106 264-379 86-191 (885)
203 KOG1059 Vesicle coat complex A 92.1 17 0.00038 37.9 21.6 187 94-308 182-372 (877)
204 PF08045 CDC14: Cell division 92.0 1.7 3.6E-05 39.9 10.1 100 107-213 107-206 (257)
205 KOG4185 Predicted E3 ubiquitin 91.9 0.16 3.5E-06 47.9 3.7 64 10-74 4-77 (296)
206 KOG3161 Predicted E3 ubiquitin 91.8 0.065 1.4E-06 53.9 0.9 60 9-73 11-78 (861)
207 COG5240 SEC21 Vesicle coat com 91.7 6.3 0.00014 40.0 14.3 148 182-346 261-408 (898)
208 PF13764 E3_UbLigase_R4: E3 ub 91.7 22 0.00047 38.3 20.5 250 128-387 112-406 (802)
209 KOG0213 Splicing factor 3b, su 91.4 1 2.2E-05 46.8 8.6 111 183-302 801-914 (1172)
210 KOG2611 Neurochondrin/leucine- 91.3 17 0.00037 36.3 17.5 140 154-299 28-181 (698)
211 PF14447 Prok-RING_4: Prokaryo 91.3 0.14 3.1E-06 34.5 1.8 45 9-57 7-51 (55)
212 COG5096 Vesicle coat complex, 91.3 7.9 0.00017 41.1 15.3 94 148-259 103-196 (757)
213 COG5209 RCD1 Uncharacterized p 91.0 3.5 7.7E-05 36.7 10.5 155 106-267 115-277 (315)
214 KOG0212 Uncharacterized conser 90.9 5.7 0.00012 40.1 13.1 186 182-385 251-442 (675)
215 PF06371 Drf_GBD: Diaphanous G 90.9 0.74 1.6E-05 40.0 6.6 79 263-341 100-186 (187)
216 PF14668 RICTOR_V: Rapamycin-i 90.8 0.8 1.7E-05 33.3 5.5 67 202-270 4-70 (73)
217 COG5181 HSH155 U2 snRNP splice 90.6 1.4 3.1E-05 44.8 8.8 152 182-342 605-759 (975)
218 PF11698 V-ATPase_H_C: V-ATPas 90.6 0.5 1.1E-05 37.8 4.7 72 227-299 42-114 (119)
219 PF12717 Cnd1: non-SMC mitotic 90.2 8.7 0.00019 33.2 12.6 109 153-281 4-112 (178)
220 PF11701 UNC45-central: Myosin 90.1 2.2 4.7E-05 36.2 8.5 98 197-297 55-156 (157)
221 PF08167 RIX1: rRNA processing 90.0 3.3 7.1E-05 35.4 9.7 110 182-299 26-142 (165)
222 KOG1061 Vesicle coat complex A 89.6 10 0.00023 39.7 14.2 67 95-168 123-191 (734)
223 KOG4151 Myosin assembly protei 89.6 18 0.0004 38.1 16.0 222 122-363 493-718 (748)
224 PF05605 zf-Di19: Drought indu 89.5 0.18 4E-06 34.3 1.2 40 8-54 1-40 (54)
225 KOG2930 SCF ubiquitin ligase, 89.5 0.26 5.6E-06 37.7 2.1 27 26-54 80-106 (114)
226 PF05004 IFRD: Interferon-rela 89.4 20 0.00043 34.1 19.7 192 183-390 45-260 (309)
227 PF04641 Rtf2: Rtf2 RING-finge 89.4 0.29 6.2E-06 45.3 2.8 36 7-42 32-68 (260)
228 PF02985 HEAT: HEAT repeat; I 89.4 1 2.2E-05 26.5 4.3 28 183-214 2-29 (31)
229 KOG1824 TATA-binding protein-i 89.2 37 0.00079 36.9 18.0 150 182-346 967-1137(1233)
230 KOG0883 Cyclophilin type, U bo 89.2 0.3 6.5E-06 46.4 2.7 45 10-56 41-85 (518)
231 PF06025 DUF913: Domain of Unk 89.1 24 0.00052 34.6 18.5 98 182-281 107-207 (379)
232 KOG3002 Zn finger protein [Gen 89.0 0.46 1E-05 44.6 3.8 59 7-74 46-105 (299)
233 PF12031 DUF3518: Domain of un 88.9 0.91 2E-05 40.9 5.4 80 244-323 139-226 (257)
234 PF12031 DUF3518: Domain of un 88.9 1.6 3.5E-05 39.3 6.9 83 199-282 138-228 (257)
235 KOG1061 Vesicle coat complex A 88.7 3.3 7.2E-05 43.2 10.0 105 182-302 87-191 (734)
236 KOG2274 Predicted importin 9 [ 88.7 26 0.00056 37.7 16.3 227 154-396 467-705 (1005)
237 KOG4265 Predicted E3 ubiquitin 88.6 0.27 5.9E-06 46.4 2.0 46 10-57 291-337 (349)
238 PF08324 PUL: PUL domain; Int 88.3 7.8 0.00017 35.8 11.7 178 94-277 64-251 (268)
239 PF05290 Baculo_IE-1: Baculovi 87.6 0.61 1.3E-05 37.6 3.2 50 8-57 79-133 (140)
240 KOG1240 Protein kinase contain 87.6 19 0.00042 39.8 15.0 278 96-400 428-740 (1431)
241 KOG2259 Uncharacterized conser 86.8 3.1 6.8E-05 42.7 8.3 143 128-299 368-510 (823)
242 PF11707 Npa1: Ribosome 60S bi 86.7 31 0.00066 33.1 16.8 166 95-268 58-247 (330)
243 KOG2025 Chromosome condensatio 86.7 42 0.00091 35.2 16.1 117 182-312 86-202 (892)
244 KOG0298 DEAD box-containing he 86.6 0.19 4.1E-06 54.9 -0.3 47 7-55 1151-1198(1394)
245 PF08324 PUL: PUL domain; Int 86.2 6.1 0.00013 36.5 9.7 164 154-320 80-250 (268)
246 PF05918 API5: Apoptosis inhib 85.4 24 0.00053 36.2 13.9 74 197-282 34-108 (556)
247 COG5215 KAP95 Karyopherin (imp 85.4 47 0.001 34.0 18.5 280 95-396 135-448 (858)
248 KOG1814 Predicted E3 ubiquitin 85.4 0.97 2.1E-05 43.5 3.8 46 8-53 183-237 (445)
249 KOG4362 Transcriptional regula 85.3 0.33 7.2E-06 50.0 0.8 66 8-74 20-86 (684)
250 KOG2999 Regulator of Rac1, req 85.2 15 0.00032 37.2 11.8 153 230-387 85-242 (713)
251 cd03569 VHS_Hrs_Vps27p VHS dom 85.2 4.8 0.0001 33.5 7.5 79 314-393 42-120 (142)
252 PRK14707 hypothetical protein; 85.1 92 0.002 37.2 21.7 268 95-382 165-440 (2710)
253 KOG4535 HEAT and armadillo rep 84.7 2.5 5.5E-05 41.8 6.3 104 197-300 496-603 (728)
254 KOG4151 Myosin assembly protei 84.2 50 0.0011 35.0 15.6 136 172-320 497-634 (748)
255 cd03569 VHS_Hrs_Vps27p VHS dom 84.1 6.7 0.00015 32.6 7.9 73 182-258 42-114 (142)
256 COG5215 KAP95 Karyopherin (imp 83.8 24 0.00052 36.0 12.6 196 182-390 134-360 (858)
257 PF08167 RIX1: rRNA processing 83.2 7.3 0.00016 33.3 8.1 114 227-342 24-143 (165)
258 cd03561 VHS VHS domain family; 83.2 8.7 0.00019 31.5 8.2 82 314-396 38-122 (133)
259 cd03568 VHS_STAM VHS domain fa 82.9 6.6 0.00014 32.8 7.4 79 314-393 38-116 (144)
260 PF08569 Mo25: Mo25-like; Int 82.5 48 0.001 31.9 14.6 184 106-302 91-285 (335)
261 KOG1941 Acetylcholine receptor 82.4 0.6 1.3E-05 44.5 1.1 45 9-53 365-413 (518)
262 PRK14707 hypothetical protein; 82.3 1.2E+02 0.0026 36.3 21.8 221 89-322 369-592 (2710)
263 KOG1943 Beta-tubulin folding c 82.0 38 0.00081 37.2 14.0 153 227-387 340-500 (1133)
264 cd03568 VHS_STAM VHS domain fa 81.1 10 0.00022 31.6 7.9 74 182-259 38-111 (144)
265 PHA02825 LAP/PHD finger-like p 80.8 2.5 5.4E-05 35.4 4.0 48 8-56 7-59 (162)
266 KOG0567 HEAT repeat-containing 80.6 47 0.001 30.6 19.1 202 132-388 66-281 (289)
267 KOG1812 Predicted E3 ubiquitin 80.2 1.4 3.1E-05 43.1 2.9 48 9-56 146-203 (384)
268 smart00288 VHS Domain present 80.1 9.1 0.0002 31.4 7.3 80 314-394 38-118 (133)
269 PF10367 Vps39_2: Vacuolar sor 79.8 0.66 1.4E-05 36.3 0.4 33 5-37 74-108 (109)
270 smart00288 VHS Domain present 79.8 11 0.00025 30.8 7.8 73 182-258 38-111 (133)
271 KOG0414 Chromosome condensatio 79.7 11 0.00025 41.3 9.4 137 134-292 920-1056(1251)
272 KOG2114 Vacuolar assembly/sort 79.6 0.98 2.1E-05 47.4 1.6 42 9-55 840-882 (933)
273 PF12460 MMS19_C: RNAPII trans 79.5 69 0.0015 31.8 19.5 110 182-302 272-396 (415)
274 KOG3665 ZYG-1-like serine/thre 79.1 18 0.00039 38.5 10.8 157 114-279 494-676 (699)
275 KOG1248 Uncharacterized conser 79.1 84 0.0018 35.0 15.6 179 106-300 712-898 (1176)
276 KOG4535 HEAT and armadillo rep 79.1 14 0.0003 36.9 9.0 153 98-259 438-604 (728)
277 PF14353 CpXC: CpXC protein 78.6 1.3 2.8E-05 36.1 1.8 48 9-56 1-49 (128)
278 PF06416 DUF1076: Protein of u 78.5 1.7 3.6E-05 33.9 2.2 49 7-57 38-92 (113)
279 cd03567 VHS_GGA VHS domain fam 78.5 12 0.00026 31.0 7.5 79 314-393 39-122 (139)
280 PF11865 DUF3385: Domain of un 78.3 19 0.0004 30.6 8.8 112 182-298 11-155 (160)
281 PHA02862 5L protein; Provision 78.2 2 4.4E-05 35.2 2.7 45 11-56 4-53 (156)
282 PF12719 Cnd3: Nuclear condens 77.6 64 0.0014 30.4 13.8 169 182-369 27-209 (298)
283 KOG4739 Uncharacterized protei 77.6 0.82 1.8E-05 41.0 0.3 51 9-64 3-55 (233)
284 COG3813 Uncharacterized protei 77.2 2.7 5.7E-05 30.0 2.7 35 28-67 28-62 (84)
285 PF07814 WAPL: Wings apart-lik 77.2 74 0.0016 30.9 19.9 93 92-191 20-116 (361)
286 PLN02195 cellulose synthase A 77.1 1.7 3.7E-05 46.9 2.5 45 11-56 8-59 (977)
287 PF11701 UNC45-central: Myosin 77.0 44 0.00095 28.2 12.0 94 154-254 60-155 (157)
288 PF00790 VHS: VHS domain; Int 76.5 9.7 0.00021 31.5 6.5 79 314-393 43-124 (140)
289 KOG1940 Zn-finger protein [Gen 76.4 1.9 4.1E-05 39.8 2.3 43 9-53 158-204 (276)
290 PF06025 DUF913: Domain of Unk 76.2 82 0.0018 30.9 20.6 96 227-323 105-206 (379)
291 PF12719 Cnd3: Nuclear condens 76.1 70 0.0015 30.1 18.7 157 151-325 41-208 (298)
292 KOG1991 Nuclear transport rece 76.1 1.3E+02 0.0027 33.0 16.6 128 132-269 409-543 (1010)
293 PLN02189 cellulose synthase 76.0 1.8 3.8E-05 47.1 2.3 45 11-56 36-87 (1040)
294 PF07800 DUF1644: Protein of u 76.0 0.91 2E-05 37.9 0.1 21 8-28 1-21 (162)
295 PRK11088 rrmA 23S rRNA methylt 75.6 1.2 2.7E-05 41.4 0.9 26 9-34 2-30 (272)
296 cd03561 VHS VHS domain family; 75.4 19 0.00041 29.4 7.9 74 182-259 38-113 (133)
297 KOG2933 Uncharacterized conser 75.1 34 0.00074 32.2 10.0 134 229-380 89-227 (334)
298 PF14446 Prok-RING_1: Prokaryo 75.0 2.5 5.4E-05 28.6 2.0 26 10-35 6-35 (54)
299 PF09538 FYDLN_acid: Protein o 74.8 2.3 5E-05 33.5 2.1 17 5-21 5-21 (108)
300 PRK06266 transcription initiat 74.3 3.3 7.1E-05 35.9 3.1 55 7-78 115-169 (178)
301 PF00790 VHS: VHS domain; Int 73.7 28 0.0006 28.7 8.5 71 182-258 43-118 (140)
302 KOG1058 Vesicle coat complex C 73.6 1.3E+02 0.0028 32.0 15.1 25 233-258 322-346 (948)
303 KOG1824 TATA-binding protein-i 73.2 1.5E+02 0.0033 32.5 23.3 132 154-297 626-758 (1233)
304 smart00531 TFIIE Transcription 73.0 2 4.4E-05 35.9 1.6 14 44-57 122-135 (147)
305 KOG1240 Protein kinase contain 72.5 26 0.00056 39.0 9.7 108 184-300 425-537 (1431)
306 KOG0567 HEAT repeat-containing 72.4 81 0.0018 29.1 12.1 74 154-255 204-277 (289)
307 KOG0301 Phospholipase A2-activ 72.2 1.3E+02 0.0029 31.5 14.2 179 198-384 557-744 (745)
308 KOG2025 Chromosome condensatio 72.1 19 0.00041 37.7 8.3 103 269-380 84-186 (892)
309 PF14205 Cys_rich_KTR: Cystein 72.1 2.5 5.5E-05 28.4 1.5 35 8-54 3-37 (55)
310 PLN02638 cellulose synthase A 71.8 2.4 5.3E-05 46.2 2.1 45 11-56 19-70 (1079)
311 PF08746 zf-RING-like: RING-li 71.5 4.2 9.1E-05 26.1 2.4 40 12-51 1-43 (43)
312 KOG1060 Vesicle coat complex A 71.5 1.1E+02 0.0024 32.8 13.5 92 242-343 156-247 (968)
313 PLN02436 cellulose synthase A 70.9 2.7 5.9E-05 45.8 2.2 45 11-56 38-89 (1094)
314 cd03567 VHS_GGA VHS domain fam 70.7 29 0.00064 28.7 7.9 73 182-258 39-116 (139)
315 KOG0211 Protein phosphatase 2A 70.1 1.6E+02 0.0036 31.7 15.5 188 182-387 438-625 (759)
316 KOG1820 Microtubule-associated 70.0 1.1E+02 0.0023 33.3 13.7 174 105-300 267-443 (815)
317 PF07191 zinc-ribbons_6: zinc- 69.8 0.38 8.3E-06 34.3 -2.9 41 9-56 1-41 (70)
318 cd00350 rubredoxin_like Rubred 69.7 3.9 8.4E-05 24.6 1.8 10 45-54 17-26 (33)
319 PF12460 MMS19_C: RNAPII trans 69.7 1.2E+02 0.0026 30.0 16.7 187 182-388 190-395 (415)
320 COG5231 VMA13 Vacuolar H+-ATPa 69.5 1.1E+02 0.0023 29.3 17.7 222 109-340 167-426 (432)
321 KOG0825 PHD Zn-finger protein 69.5 3.5 7.5E-05 43.1 2.5 37 6-42 93-136 (1134)
322 PHA03096 p28-like protein; Pro 69.0 3.1 6.6E-05 38.9 1.9 43 11-53 180-231 (284)
323 KOG0314 Predicted E3 ubiquitin 68.8 3.4 7.5E-05 40.8 2.3 69 5-76 215-286 (448)
324 TIGR00373 conserved hypothetic 68.5 3.8 8.2E-05 34.8 2.2 13 45-57 128-140 (158)
325 COG1675 TFA1 Transcription ini 68.3 7.4 0.00016 33.5 3.9 33 45-77 132-164 (176)
326 KOG4653 Uncharacterized conser 67.9 1.8E+02 0.004 31.4 17.1 57 90-147 724-782 (982)
327 PF14726 RTTN_N: Rotatin, an a 67.7 51 0.0011 25.4 8.1 67 226-294 28-94 (98)
328 COG4530 Uncharacterized protei 67.7 5.3 0.00012 31.0 2.6 34 5-38 5-43 (129)
329 KOG2032 Uncharacterized conser 67.5 1.4E+02 0.0031 30.0 19.6 164 132-307 253-422 (533)
330 KOG1820 Microtubule-associated 67.4 1.1E+02 0.0024 33.1 13.2 187 152-367 268-458 (815)
331 PF08569 Mo25: Mo25-like; Int 67.2 1.2E+02 0.0027 29.1 20.2 208 182-397 77-293 (335)
332 PLN02915 cellulose synthase A 67.0 3.5 7.7E-05 44.9 2.1 46 10-56 16-68 (1044)
333 TIGR02300 FYDLN_acid conserved 66.8 4 8.7E-05 32.8 1.9 29 5-33 5-38 (129)
334 COG5220 TFB3 Cdk activating ki 66.1 1.9 4.2E-05 38.3 -0.0 47 7-54 8-62 (314)
335 KOG2274 Predicted importin 9 [ 65.8 2.1E+02 0.0045 31.2 15.5 138 155-300 548-689 (1005)
336 COG5209 RCD1 Uncharacterized p 65.1 1.1E+02 0.0023 27.7 14.3 150 154-308 117-276 (315)
337 PF12906 RINGv: RING-variant d 64.9 2.9 6.2E-05 27.5 0.6 40 12-51 1-47 (47)
338 KOG1060 Vesicle coat complex A 64.1 2.1E+02 0.0046 30.7 17.4 74 197-281 155-228 (968)
339 PF14569 zf-UDP: Zinc-binding 64.0 9.7 0.00021 27.8 3.2 47 10-57 10-63 (80)
340 PF10571 UPF0547: Uncharacteri 62.9 4.3 9.3E-05 23.0 1.0 9 11-19 2-10 (26)
341 PF01347 Vitellogenin_N: Lipop 62.4 40 0.00086 35.3 9.0 105 182-298 396-517 (618)
342 KOG1967 DNA repair/transcripti 62.3 33 0.00072 37.0 8.0 149 132-294 866-1018(1030)
343 KOG2462 C2H2-type Zn-finger pr 62.2 2.4 5.1E-05 38.8 -0.2 51 7-57 159-227 (279)
344 COG5236 Uncharacterized conser 62.1 5.2 0.00011 37.7 2.0 49 7-55 59-107 (493)
345 COG5098 Chromosome condensatio 62.0 1E+02 0.0022 32.5 11.1 149 228-383 240-411 (1128)
346 KOG0301 Phospholipase A2-activ 61.8 2.1E+02 0.0046 30.0 17.5 161 106-282 559-728 (745)
347 COG2176 PolC DNA polymerase II 61.4 8.4 0.00018 42.5 3.6 41 5-58 910-952 (1444)
348 cd00730 rubredoxin Rubredoxin; 60.4 4.2 9.2E-05 27.1 0.8 13 5-17 30-42 (50)
349 KOG0414 Chromosome condensatio 60.3 2.4E+02 0.0051 31.8 13.9 108 273-388 315-429 (1251)
350 PF03854 zf-P11: P-11 zinc fin 60.2 3.1 6.8E-05 27.1 0.2 37 19-57 10-47 (50)
351 KOG3665 ZYG-1-like serine/thre 60.1 1.7E+02 0.0036 31.4 13.0 156 160-320 494-674 (699)
352 PLN02400 cellulose synthase 59.5 4.6 0.0001 44.2 1.4 45 11-56 38-89 (1085)
353 PF10272 Tmpp129: Putative tra 58.5 8.3 0.00018 37.2 2.7 34 24-57 303-352 (358)
354 PRK14559 putative protein seri 58.0 9.4 0.0002 40.1 3.3 19 11-35 3-21 (645)
355 PF11865 DUF3385: Domain of un 57.5 1.2E+02 0.0026 25.7 12.4 142 227-382 9-152 (160)
356 PF07814 WAPL: Wings apart-lik 57.2 1.9E+02 0.0042 28.1 14.0 93 183-280 23-116 (361)
357 PF05883 Baculo_RING: Baculovi 57.2 6.6 0.00014 32.0 1.6 43 9-53 26-77 (134)
358 KOG2956 CLIP-associating prote 57.0 2.2E+02 0.0047 28.6 17.0 189 135-343 285-478 (516)
359 PF10363 DUF2435: Protein of u 57.0 43 0.00094 25.5 6.0 68 230-300 5-72 (92)
360 PF00301 Rubredoxin: Rubredoxi 56.4 4.8 0.0001 26.5 0.5 13 5-17 30-42 (47)
361 KOG1078 Vesicle coat complex C 56.2 2.9E+02 0.0062 29.7 23.0 77 132-219 240-316 (865)
362 PF12530 DUF3730: Protein of u 55.8 1.6E+02 0.0034 26.6 18.8 126 151-299 15-150 (234)
363 PF06012 DUF908: Domain of Unk 55.7 52 0.0011 31.5 7.8 79 200-278 237-324 (329)
364 smart00638 LPD_N Lipoprotein N 55.7 2.6E+02 0.0055 29.0 18.7 141 182-345 358-512 (574)
365 PF06906 DUF1272: Protein of u 55.3 12 0.00027 25.3 2.3 26 28-57 28-53 (57)
366 KOG1020 Sister chromatid cohes 55.1 3.5E+02 0.0075 31.5 14.3 129 202-346 794-925 (1692)
367 KOG2062 26S proteasome regulat 54.8 1.2E+02 0.0027 32.1 10.4 75 226-308 552-626 (929)
368 PF00096 zf-C2H2: Zinc finger, 54.7 3.4 7.4E-05 22.1 -0.3 14 10-23 1-14 (23)
369 PF06844 DUF1244: Protein of u 54.7 7.6 0.00017 27.3 1.3 12 31-42 12-23 (68)
370 PF10363 DUF2435: Protein of u 54.3 66 0.0014 24.5 6.6 84 183-281 5-88 (92)
371 KOG1059 Vesicle coat complex A 54.0 3E+02 0.0065 29.3 23.0 247 98-387 149-402 (877)
372 KOG4464 Signaling protein RIC- 53.9 2.3E+02 0.0051 28.0 18.0 152 106-260 61-233 (532)
373 PF14500 MMS19_N: Dos2-interac 51.9 2E+02 0.0043 26.6 20.6 213 105-342 13-237 (262)
374 PF05918 API5: Apoptosis inhib 51.5 3E+02 0.0064 28.5 14.4 98 133-255 59-159 (556)
375 PF01347 Vitellogenin_N: Lipop 51.3 3.1E+02 0.0067 28.6 20.9 213 127-382 386-617 (618)
376 KOG4718 Non-SMC (structural ma 50.7 9.8 0.00021 33.4 1.7 45 10-56 182-227 (235)
377 KOG2933 Uncharacterized conser 49.8 98 0.0021 29.3 8.1 112 182-301 89-200 (334)
378 PF06676 DUF1178: Protein of u 49.6 7.5 0.00016 32.4 0.8 24 26-54 9-41 (148)
379 KOG2062 26S proteasome regulat 49.2 3.4E+02 0.0073 29.1 12.4 86 196-298 566-651 (929)
380 KOG1020 Sister chromatid cohes 49.2 3E+02 0.0065 32.0 12.8 109 184-307 819-928 (1692)
381 KOG2032 Uncharacterized conser 48.3 2.2E+02 0.0047 28.8 10.6 140 242-387 271-416 (533)
382 cd00729 rubredoxin_SM Rubredox 47.5 9.7 0.00021 23.1 0.9 10 45-54 18-27 (34)
383 cd03565 VHS_Tom1 VHS domain fa 47.4 1.1E+02 0.0025 25.2 7.6 80 314-394 39-122 (141)
384 PF13894 zf-C2H2_4: C2H2-type 47.4 6.4 0.00014 20.8 0.0 13 10-22 1-13 (24)
385 PF12726 SEN1_N: SEN1 N termin 47.3 1.5E+02 0.0032 32.0 10.3 125 228-357 441-568 (727)
386 PF14225 MOR2-PAG1_C: Cell mor 47.1 2.4E+02 0.0051 26.1 16.1 65 229-299 189-253 (262)
387 COG5116 RPN2 26S proteasome re 46.8 1.2E+02 0.0026 31.3 8.6 68 226-302 549-617 (926)
388 KOG4653 Uncharacterized conser 46.6 4.2E+02 0.0092 28.9 17.2 109 275-387 852-964 (982)
389 PF10235 Cript: Microtubule-as 46.6 14 0.00031 27.9 1.8 36 10-56 45-80 (90)
390 PRK07758 hypothetical protein; 45.9 15 0.00033 28.0 1.8 33 26-66 11-43 (95)
391 COG5218 YCG1 Chromosome conden 45.2 3.7E+02 0.0081 28.0 11.7 110 227-345 90-199 (885)
392 KOG2272 Focal adhesion protein 44.6 15 0.00032 33.2 1.9 52 3-55 177-231 (332)
393 PRK05978 hypothetical protein; 44.4 13 0.00029 31.0 1.5 11 46-56 53-63 (148)
394 PLN03086 PRLI-interacting fact 44.3 28 0.00062 35.8 4.1 52 5-56 449-515 (567)
395 KOG2137 Protein kinase [Signal 43.9 1.9E+02 0.004 30.6 9.8 135 134-282 386-520 (700)
396 PF14663 RasGEF_N_2: Rapamycin 43.7 63 0.0014 25.7 5.3 40 229-269 9-48 (115)
397 PF08216 CTNNBL: Catenin-beta- 43.5 42 0.00092 26.4 4.1 38 245-282 62-99 (108)
398 PF03130 HEAT_PBS: PBS lyase H 43.3 26 0.00056 19.7 2.2 26 245-280 1-26 (27)
399 KOG1848 Uncharacterized conser 43.1 5.9E+02 0.013 29.5 14.6 168 197-370 854-1029(1610)
400 KOG3993 Transcription factor ( 42.9 2.4 5.2E-05 41.0 -3.5 43 7-57 265-307 (500)
401 KOG1943 Beta-tubulin folding c 42.5 5.3E+02 0.012 28.9 18.3 216 134-368 338-593 (1133)
402 PF11707 Npa1: Ribosome 60S bi 42.3 3.1E+02 0.0068 26.2 13.8 162 135-304 58-241 (330)
403 KOG0309 Conserved WD40 repeat- 41.6 20 0.00043 37.6 2.5 45 9-55 1028-1075(1081)
404 KOG1815 Predicted E3 ubiquitin 41.5 19 0.0004 36.2 2.3 35 8-42 69-104 (444)
405 KOG0915 Uncharacterized conser 41.0 6.5E+02 0.014 29.5 16.1 258 134-405 999-1285(1702)
406 PF09889 DUF2116: Uncharacteri 41.0 16 0.00034 25.3 1.2 13 45-57 3-15 (59)
407 PF13251 DUF4042: Domain of un 40.1 2.5E+02 0.0054 24.4 9.2 68 230-301 103-175 (182)
408 KOG0883 Cyclophilin type, U bo 39.9 15 0.00033 35.3 1.3 49 7-55 99-156 (518)
409 smart00834 CxxC_CXXC_SSSS Puta 39.9 19 0.00041 22.4 1.4 11 45-55 26-36 (41)
410 TIGR00155 pqiA_fam integral me 39.8 34 0.00073 33.9 3.8 48 4-67 7-55 (403)
411 smart00734 ZnF_Rad18 Rad18-lik 39.4 14 0.00031 20.8 0.7 9 11-19 3-11 (26)
412 smart00638 LPD_N Lipoprotein N 39.1 4.6E+02 0.0099 27.1 13.6 64 182-255 478-542 (574)
413 KOG1087 Cytosolic sorting prot 38.0 58 0.0013 32.8 5.1 81 314-399 39-121 (470)
414 PF14726 RTTN_N: Rotatin, an a 38.0 1.9E+02 0.0041 22.3 7.2 64 182-252 31-94 (98)
415 PF10274 ParcG: Parkin co-regu 37.7 2.8E+02 0.006 24.2 10.6 72 182-260 39-111 (183)
416 PF10915 DUF2709: Protein of u 37.6 29 0.00063 30.0 2.5 34 10-53 88-121 (238)
417 PF04499 SAPS: SIT4 phosphatas 37.3 2.7E+02 0.0058 28.3 9.8 76 225-300 59-148 (475)
418 KOG3214 Uncharacterized Zn rib 36.9 12 0.00027 28.6 0.2 40 6-57 20-59 (109)
419 KOG1967 DNA repair/transcripti 36.7 2.1E+02 0.0047 31.2 9.0 110 132-252 908-1018(1030)
420 PF07923 N1221: N1221-like pro 35.3 93 0.002 29.3 5.9 55 226-281 58-127 (293)
421 KOG2137 Protein kinase [Signal 35.0 2.9E+02 0.0063 29.2 9.6 124 182-321 390-516 (700)
422 cd00197 VHS_ENTH_ANTH VHS, ENT 34.7 1.9E+02 0.0042 22.5 6.9 71 314-385 38-113 (115)
423 cd03565 VHS_Tom1 VHS domain fa 34.5 2.2E+02 0.0047 23.5 7.3 74 182-258 39-115 (141)
424 PF04499 SAPS: SIT4 phosphatas 34.4 1.8E+02 0.004 29.5 8.1 43 348-390 53-95 (475)
425 TIGR02605 CxxC_CxxC_SSSS putat 34.1 13 0.00027 24.8 -0.1 9 45-53 26-34 (52)
426 PF12171 zf-C2H2_jaz: Zinc-fin 33.9 24 0.00052 19.8 1.0 17 9-25 1-17 (27)
427 KOG2932 E3 ubiquitin ligase in 33.6 21 0.00045 33.3 1.1 28 24-55 106-133 (389)
428 PF14225 MOR2-PAG1_C: Cell mor 33.2 2.5E+02 0.0054 26.0 8.2 64 182-256 189-252 (262)
429 COG5098 Chromosome condensatio 33.1 5.9E+02 0.013 27.3 11.2 105 182-301 934-1038(1128)
430 PF11791 Aconitase_B_N: Aconit 32.6 1.2E+02 0.0027 25.4 5.4 29 271-300 95-123 (154)
431 KOG1078 Vesicle coat complex C 32.5 6.7E+02 0.015 27.1 13.0 66 185-261 249-314 (865)
432 PF11864 DUF3384: Domain of un 32.4 5.3E+02 0.012 25.9 12.5 9 358-366 251-259 (464)
433 PF04423 Rad50_zn_hook: Rad50 32.3 27 0.00058 23.5 1.3 12 46-57 21-32 (54)
434 PF12874 zf-met: Zinc-finger o 32.2 13 0.00028 20.3 -0.3 15 10-24 1-15 (25)
435 COG3492 Uncharacterized protei 31.6 24 0.00052 26.5 1.0 12 31-42 43-54 (104)
436 PF08389 Xpo1: Exportin 1-like 31.4 2.7E+02 0.0059 22.3 11.2 64 228-295 82-148 (148)
437 PF13811 DUF4186: Domain of un 31.3 31 0.00067 27.1 1.5 18 22-40 65-85 (111)
438 PF09723 Zn-ribbon_8: Zinc rib 30.1 15 0.00033 23.3 -0.2 25 26-53 10-34 (42)
439 KOG3899 Uncharacterized conser 30.1 32 0.0007 31.8 1.7 28 30-57 328-366 (381)
440 KOG2169 Zn-finger transcriptio 30.1 56 0.0012 34.4 3.8 63 8-71 305-370 (636)
441 KOG1087 Cytosolic sorting prot 29.7 1.6E+02 0.0035 29.7 6.7 70 182-255 39-109 (470)
442 PF01365 RYDR_ITPR: RIH domain 29.7 2.6E+02 0.0056 24.5 7.6 54 124-177 34-101 (207)
443 PF14311 DUF4379: Domain of un 29.4 30 0.00065 23.3 1.1 23 26-51 33-55 (55)
444 KOG2034 Vacuolar sorting prote 29.3 24 0.00053 37.7 0.9 35 7-41 815-851 (911)
445 PF12830 Nipped-B_C: Sister ch 29.2 3.8E+02 0.0082 23.2 10.8 112 152-281 23-141 (187)
446 COG4049 Uncharacterized protei 28.9 15 0.00031 24.9 -0.5 16 7-22 15-30 (65)
447 KOG3579 Predicted E3 ubiquitin 28.6 31 0.00066 31.8 1.3 43 8-50 267-316 (352)
448 PRK00420 hypothetical protein; 28.6 21 0.00046 28.3 0.3 13 44-56 39-51 (112)
449 PF12660 zf-TFIIIC: Putative z 27.8 21 0.00045 27.7 0.1 45 11-55 16-65 (99)
450 PF12530 DUF3730: Protein of u 26.9 4.7E+02 0.01 23.5 17.9 131 103-257 13-150 (234)
451 PF03810 IBN_N: Importin-beta 26.8 2.1E+02 0.0046 20.1 5.4 35 356-390 13-49 (77)
452 KOG2593 Transcription initiati 26.8 75 0.0016 31.3 3.6 50 7-68 126-176 (436)
453 PF09162 Tap-RNA_bind: Tap, RN 26.7 38 0.00082 25.6 1.3 25 23-51 10-34 (88)
454 PHA00626 hypothetical protein 26.6 47 0.001 22.6 1.6 13 45-57 23-35 (59)
455 PF06012 DUF908: Domain of Unk 26.6 1.5E+02 0.0033 28.4 5.8 62 246-307 239-304 (329)
456 PRK00448 polC DNA polymerase I 26.5 47 0.001 38.5 2.6 41 4-57 903-945 (1437)
457 KOG2462 C2H2-type Zn-finger pr 26.4 30 0.00066 31.8 0.9 46 10-56 188-254 (279)
458 PRK04023 DNA polymerase II lar 26.4 96 0.0021 34.2 4.6 44 10-57 627-675 (1121)
459 KOG2956 CLIP-associating prote 26.2 6.9E+02 0.015 25.3 16.3 83 198-281 300-382 (516)
460 PF04216 FdhE: Protein involve 25.9 8.3 0.00018 36.2 -2.9 44 10-55 173-221 (290)
461 COG4068 Uncharacterized protei 25.8 44 0.00095 22.9 1.3 13 45-57 8-20 (64)
462 cd03572 ENTH_epsin_related ENT 25.7 3.6E+02 0.0077 21.7 10.1 73 314-387 39-119 (122)
463 COG1773 Rubredoxin [Energy pro 25.6 35 0.00076 23.2 0.9 13 5-17 32-44 (55)
464 cd01408 SIRT1 SIRT1: Eukaryoti 25.4 81 0.0018 28.6 3.5 32 26-57 121-152 (235)
465 KOG4231 Intracellular membrane 25.4 74 0.0016 32.1 3.4 65 275-339 332-396 (763)
466 KOG1609 Protein involved in mR 25.3 53 0.0012 30.9 2.5 48 10-57 79-135 (323)
467 PF10497 zf-4CXXC_R1: Zinc-fin 25.1 80 0.0017 24.7 3.0 45 10-54 8-70 (105)
468 PF00412 LIM: LIM domain; Int 25.1 52 0.0011 22.0 1.7 31 8-38 25-56 (58)
469 TIGR01562 FdhE formate dehydro 25.0 21 0.00046 33.7 -0.3 43 10-54 185-233 (305)
470 KOG4231 Intracellular membrane 25.0 2.9E+02 0.0064 28.1 7.3 60 197-258 340-399 (763)
471 PF12773 DZR: Double zinc ribb 24.9 79 0.0017 20.6 2.5 13 45-57 29-41 (50)
472 PRK14892 putative transcriptio 24.3 38 0.00082 26.2 1.0 37 5-56 17-53 (99)
473 COG5116 RPN2 26S proteasome re 24.2 1.6E+02 0.0036 30.3 5.5 31 269-300 550-581 (926)
474 PF10521 DUF2454: Protein of u 23.9 5.1E+02 0.011 24.0 8.7 32 182-217 120-151 (282)
475 TIGR01405 polC_Gram_pos DNA po 23.6 64 0.0014 36.8 2.9 41 4-57 678-720 (1213)
476 PF04388 Hamartin: Hamartin pr 23.6 6.2E+02 0.013 27.0 10.1 58 242-299 81-139 (668)
477 PF13465 zf-H2C2_2: Zinc-finge 23.2 32 0.00069 19.2 0.3 13 8-20 13-25 (26)
478 PRK01343 zinc-binding protein; 23.2 85 0.0018 21.6 2.4 14 9-22 9-22 (57)
479 PHA00732 hypothetical protein 22.9 1.1E+02 0.0024 22.5 3.1 36 10-56 2-38 (79)
480 PF06685 DUF1186: Protein of u 22.6 4.1E+02 0.0089 24.4 7.5 86 182-278 74-161 (249)
481 KOG1428 Inhibitor of type V ad 22.3 76 0.0016 36.4 3.0 49 9-57 3486-3545(3738)
482 PF12830 Nipped-B_C: Sister ch 22.2 4E+02 0.0087 23.0 7.2 68 182-260 9-76 (187)
483 COG5110 RPN1 26S proteasome re 22.2 8.1E+02 0.018 25.5 9.8 145 228-374 47-224 (881)
484 smart00132 LIM Zinc-binding do 22.1 65 0.0014 19.1 1.6 35 11-55 1-37 (39)
485 PHA00733 hypothetical protein 22.1 1.9E+02 0.0042 23.4 4.8 44 9-57 40-85 (128)
486 COG1645 Uncharacterized Zn-fin 21.5 31 0.00066 28.1 -0.0 10 44-53 43-52 (131)
487 PF02146 SIR2: Sir2 family; I 21.4 61 0.0013 27.8 1.9 32 26-57 110-141 (178)
488 KOG3268 Predicted E3 ubiquitin 21.0 78 0.0017 27.1 2.3 31 25-55 188-227 (234)
489 PF04064 DUF384: Domain of unk 20.9 1.4E+02 0.0031 20.6 3.2 29 252-280 1-29 (58)
490 COG2995 PqiA Uncharacterized p 20.8 1E+02 0.0022 30.1 3.3 36 6-57 15-50 (418)
491 COG5183 SSM4 Protein involved 20.8 81 0.0018 33.7 2.8 48 8-55 11-65 (1175)
492 PF08273 Prim_Zn_Ribbon: Zinc- 20.7 38 0.00083 21.4 0.3 23 11-35 5-32 (40)
493 PF11791 Aconitase_B_N: Aconit 20.5 4.5E+02 0.0097 22.1 6.5 100 228-340 22-121 (154)
494 COG5656 SXM1 Importin, protein 20.4 1E+03 0.022 25.8 10.4 123 132-266 407-536 (970)
495 PF09237 GAGA: GAGA factor; I 20.3 33 0.00071 22.9 -0.1 13 10-22 25-37 (54)
496 PF14663 RasGEF_N_2: Rapamycin 20.3 1.9E+02 0.0042 22.9 4.3 39 271-310 9-47 (115)
497 cd03572 ENTH_epsin_related ENT 20.0 4.7E+02 0.01 21.1 6.7 48 94-141 39-90 (122)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=8.9e-27 Score=255.60 Aligned_cols=281 Identities=17% Similarity=0.113 Sum_probs=236.0
Q ss_pred chHHHHHHHHHhcc----hhHHHHHHHHHHHHHHhhHHhHHHHHH-hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcC
Q 015513 91 NKDQVRKLVRDLDS----GHLRISTLKKMEALAMENERNRKSLEE-AFVVRALVLFIITSYKGNKTTGLEEALRILSLVW 165 (405)
Q Consensus 91 ~~~~i~~lv~~l~~----~~~~~~Al~~L~~l~~~~~~~r~~i~~-~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~ 165 (405)
....+..+++++.+ ++.+.+|+..|+.+++++++||..|.+ .|+||.|+.+|.+.+ ...++.|+.+|.+|+
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~----~~vk~nAaaaL~nLS 86 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGT----LGAKVNAAAVLGVLC 86 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCC----HHHHHHHHHHHHHHh
Confidence 35678889999853 388999999999999999999999997 899999999997542 345899999999999
Q ss_pred CCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhh---ccchhhhcccHHHHHHHHHHHhhcC-
Q 015513 166 SPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELA---SKGLLESTLNLDFFKEMVKLLKENI- 241 (405)
Q Consensus 166 ~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~---~~~~~i~~~~~g~i~~Lv~lL~~~~- 241 (405)
.++ +++..|...| +||+|+.+|++ ++.+.|++|+++|++|+... .++..++ .+.|+|++|+++|+++.
T Consensus 87 ~~e-~nk~~Iv~~G--aIppLV~LL~s----Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~-v~~GaVp~Lv~lL~~gsk 158 (2102)
T PLN03200 87 KEE-DLRVKVLLGG--CIPPLLSLLKS----GSAEAQKAAAEAIYAVSSGGLSDHVGSKIF-STEGVVPSLWDQLQPGNK 158 (2102)
T ss_pred cCH-HHHHHHHHcC--ChHHHHHHHHC----CCHHHHHHHHHHHHHHHcCcchhhhhhhhh-hhcCChHHHHHHHhCCch
Confidence 874 7888888877 99999999998 89999999999999999863 3454555 57899999999999872
Q ss_pred -ChHHHHHHHHHHHHhccCCchhHH-HHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcC-HhhHHHHHhcccchHHH
Q 015513 242 -SQQATKSGLHVLLQACPMGGNRVK-ITEANAVFELIELELTKPEKSTTELIFNLLAQLCSC-ADGRLKFREHAGAIAMV 318 (405)
Q Consensus 242 -~~~~~~~a~~aL~~L~~~~~n~~~-~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~L 318 (405)
+...++.++.+|+|||.+.+|+.. ++++|+||.|+++|.++ +...++.|+++|.+++.+ ++.+.++++ .|+||.|
T Consensus 159 ~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~-d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~L 236 (2102)
T PLN03200 159 QDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG-NSDAQANAASLLARLMMAFESSISKVLD-AGAVKQL 236 (2102)
T ss_pred hhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHH
Confidence 223457778999999999988754 68999999999999986 788999999999999865 668888865 7899999
Q ss_pred HHHHHccC-hhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccC--------cHHHHHHHHHHHHHhhc
Q 015513 319 TKRLLRVS-PATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADC--------EKYLKDRAKEILRLHSN 387 (405)
Q Consensus 319 v~~l~~~s-~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~--------~~~~k~~A~~ll~~l~~ 387 (405)
+++|.... ...++.|+.+|++|+..+ .+.++.+++.|+++.|+.++.+.. ....++.|.+.|.++.+
T Consensus 237 V~LL~sg~~~~VRE~AA~AL~nLAs~s--~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 237 LKLLGQGNEVSVRAEAAGALEALSSQS--KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred HHHHccCCChHHHHHHHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 99554433 477999999999999754 458999999999999999997432 23468999999998776
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=1.4e-26 Score=254.11 Aligned_cols=280 Identities=17% Similarity=0.161 Sum_probs=234.4
Q ss_pred hHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCch
Q 015513 92 KDQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSN 169 (405)
Q Consensus 92 ~~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~ 169 (405)
..+++.|++.|++ ...|..|++.|++++..++++|..|+++|+||+|+++|.+++ ...+++|+|+|.||+.+++
T Consensus 445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~----~~iqeeAawAL~NLa~~~~ 520 (2102)
T PLN03200 445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS----QKAKEDSATVLWNLCCHSE 520 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC----HHHHHHHHHHHHHHhCCcH
Confidence 4578899999964 488899999999999999999999999999999999998653 3459999999999999877
Q ss_pred hhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccch-----------------------------
Q 015513 170 ENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGL----------------------------- 220 (405)
Q Consensus 170 ~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~----------------------------- 220 (405)
+++.++.+.| +++.|+++|++ ++.+.++.|+++|.+|+...++..
T Consensus 521 qir~iV~~aG--AIppLV~LL~s----gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl 594 (2102)
T PLN03200 521 DIRACVESAG--AVPALLWLLKN----GGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSV 594 (2102)
T ss_pred HHHHHHHHCC--CHHHHHHHHhC----CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Confidence 7888887888 99999999998 899999999999999964322110
Q ss_pred -------hhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCC-chhHHHHhhcchHHHHHHhhcCCCCCcHHHHH
Q 015513 221 -------LESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMG-GNRVKITEANAVFELIELELTKPEKSTTELIF 292 (405)
Q Consensus 221 -------~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~-~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~ 292 (405)
..+....|+++.|++||+++ +...++.|+++|.+++.+. +++..++..|+||+|+.+|.++ +.+++..++
T Consensus 595 ~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~-~~~v~keAA 672 (2102)
T PLN03200 595 ASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN-TEAVATQSA 672 (2102)
T ss_pred cchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC-ChHHHHHHH
Confidence 00002458999999999998 8999999999999999854 6788899999999999999986 778899999
Q ss_pred HHHHHHhcC--HhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccC
Q 015513 293 NLLAQLCSC--ADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADC 370 (405)
Q Consensus 293 ~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~ 370 (405)
++|.+|..+ .+++..++ +.|+|++|++++...+....+.++.+|.+++... +.+.++.+.|+++.|+.+|++ +
T Consensus 673 ~AL~nL~~~~~~~q~~~~v-~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~---e~~~ei~~~~~I~~Lv~lLr~-G 747 (2102)
T PLN03200 673 RALAALSRSIKENRKVSYA-AEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP---EVAAEALAEDIILPLTRVLRE-G 747 (2102)
T ss_pred HHHHHHHhCCCHHHHHHHH-HcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc---hHHHHHHhcCcHHHHHHHHHh-C
Confidence 999999954 33445554 4799999999776556788999999999999764 368888999999999999995 5
Q ss_pred cHHHHHHHHHHHHHhhcc
Q 015513 371 EKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 371 ~~~~k~~A~~ll~~l~~~ 388 (405)
+++.|+.|+++|..+-+.
T Consensus 748 ~~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 748 TLEGKRNAARALAQLLKH 765 (2102)
T ss_pred ChHHHHHHHHHHHHHHhC
Confidence 788898888877666554
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.2e-25 Score=199.63 Aligned_cols=278 Identities=14% Similarity=0.077 Sum_probs=234.7
Q ss_pred HHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchh
Q 015513 93 DQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNE 170 (405)
Q Consensus 93 ~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~ 170 (405)
.++.++.+.-++ ...|.+++..|.++.. ..+||+.++.+|++|+||+++++.+. ..++.+..++.+++.+. .
T Consensus 167 GaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~----dvqyycttaisnIaVd~-~ 240 (550)
T KOG4224|consen 167 GALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDL----DVQYYCTTAISNIAVDR-R 240 (550)
T ss_pred cchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCCh----hHHHHHHHHhhhhhhhH-H
Confidence 455566663333 3778899999999874 77899999999999999999987643 34999999999998765 6
Q ss_pred hHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHH
Q 015513 171 NKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGL 250 (405)
Q Consensus 171 ~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 250 (405)
.|+++++.+...+|.||.+.+. +++.++-.|..+|++|++..++...++ +.|.+|.||+||+++ .-+...+..
T Consensus 241 ~Rk~Laqaep~lv~~Lv~Lmd~----~s~kvkcqA~lALrnlasdt~Yq~eiv--~ag~lP~lv~Llqs~-~~plilasV 313 (550)
T KOG4224|consen 241 ARKILAQAEPKLVPALVDLMDD----GSDKVKCQAGLALRNLASDTEYQREIV--EAGSLPLLVELLQSP-MGPLILASV 313 (550)
T ss_pred HHHHHHhcccchHHHHHHHHhC----CChHHHHHHHHHHhhhcccchhhhHHH--hcCCchHHHHHHhCc-chhHHHHHH
Confidence 7888887765689999999998 899999999999999999999998887 789999999999987 667777888
Q ss_pred HHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHh-hHHHHHhcccchHHHHHHHHccChhh
Q 015513 251 HVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCAD-GRLKFREHAGAIAMVTKRLLRVSPAT 329 (405)
Q Consensus 251 ~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~~l~~~s~~~ 329 (405)
.+++|++-++-|...++++|.+.|||.+|+.+.+++++-+|..+|++|+.+.+ ++..| .+.|+||.+.++++..+-..
T Consensus 314 aCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i-~esgAi~kl~eL~lD~pvsv 392 (550)
T KOG4224|consen 314 ACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVI-RESGAIPKLIELLLDGPVSV 392 (550)
T ss_pred HHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHH-hhcCchHHHHHHHhcCChhH
Confidence 89999999999999999999999999999987556799999999999998655 56665 45899999999877776677
Q ss_pred hHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 330 NDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 330 ~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
++.-.+++..|+.... .+..+.+.|.++.|+.++.+ -+.+++.+|++.|-.+...
T Consensus 393 qseisac~a~Lal~d~---~k~~lld~gi~~iLIp~t~s-~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 393 QSEISACIAQLALNDN---DKEALLDSGIIPILIPWTGS-ESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHHHHHHHHHHhccc---cHHHHhhcCCcceeecccCc-cchhhcccHHHHHHhhhhh
Confidence 7776677777776533 47889999999999999984 4888999999888877764
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.1e-23 Score=204.37 Aligned_cols=279 Identities=14% Similarity=0.151 Sum_probs=228.7
Q ss_pred hHHHHHHHHHhc---chhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCc
Q 015513 92 KDQVRKLVRDLD---SGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPS 168 (405)
Q Consensus 92 ~~~i~~lv~~l~---~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~ 168 (405)
..-++.+|..++ ++..+.+|+|+|.+++.++.+..+.++++|+||.++.+|.+++. .++|.|+|+|.|++.+.
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~----~v~eQavWALgNIagds 183 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA----DVREQAVWALGNIAGDS 183 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH----HHHHHHHHHHhccccCC
Confidence 355677788773 25889999999999999999999999999999999999987643 45999999999999999
Q ss_pred hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHH
Q 015513 169 NENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKS 248 (405)
Q Consensus 169 ~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~ 248 (405)
+.+|..+...| ++++|+.++... .......+++|+|.||+...+...... .-..+++.|..+|.+. |.++...
T Consensus 184 ~~~Rd~vl~~g--~l~pLl~~l~~~---~~~~~lRn~tW~LsNlcrgk~P~P~~~-~v~~iLp~L~~ll~~~-D~~Vl~D 256 (514)
T KOG0166|consen 184 PDCRDYVLSCG--ALDPLLRLLNKS---DKLSMLRNATWTLSNLCRGKNPSPPFD-VVAPILPALLRLLHST-DEEVLTD 256 (514)
T ss_pred hHHHHHHHhhc--chHHHHHHhccc---cchHHHHHHHHHHHHHHcCCCCCCcHH-HHHHHHHHHHHHHhcC-CHHHHHH
Confidence 99999999998 999999999872 334788999999999998775444333 2358899999999998 9999999
Q ss_pred HHHHHHHhccCC-chhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccCh
Q 015513 249 GLHVLLQACPMG-GNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSP 327 (405)
Q Consensus 249 a~~aL~~L~~~~-~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~ 327 (405)
|++||.+|+.+. +....++++|++|.||++|... +..++--|+.++.|++..++.+.+.+-..|++|.|.. ++..++
T Consensus 257 a~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~-~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~-ll~~s~ 334 (514)
T KOG0166|consen 257 ACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS-SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSN-LLSSSP 334 (514)
T ss_pred HHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC-CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHH-HhccCc
Confidence 999999999765 4555678999999999999885 6778889999999999999988888778899999999 444333
Q ss_pred --hhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 015513 328 --ATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHS 386 (405)
Q Consensus 328 --~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~ 386 (405)
..++.|.-++.+++. ++.+.++.++++|.+|.|+.+|+++. -.+|..|++++..+.
T Consensus 335 ~~~ikkEAcW~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~e-f~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 335 KESIKKEACWTISNITA--GNQEQIQAVIDANLIPVLINLLQTAE-FDIRKEAAWAISNLT 392 (514)
T ss_pred chhHHHHHHHHHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccc-hHHHHHHHHHHHhhc
Confidence 334556666666664 45668999999999999999999654 455555555555443
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.6e-23 Score=203.16 Aligned_cols=304 Identities=16% Similarity=0.145 Sum_probs=236.2
Q ss_pred HHHHHhcCC-CCCCCCCCCCchHHHHHHHHHhcch--hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccC
Q 015513 72 QAWCTHNGI-DRIPTPKSALNKDQVRKLVRDLDSG--HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKG 148 (405)
Q Consensus 72 ~~~~~~~~~-~~~~~~~~~~~~~~i~~lv~~l~~~--~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~ 148 (405)
..|...|=. .....++..++...++.++..+.++ +.+.+|.|.|.+++.+++..|..+.+.|++++|+.++.....
T Consensus 130 AAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~- 208 (514)
T KOG0166|consen 130 AAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK- 208 (514)
T ss_pred HHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc-
Confidence 446555511 1112344556667777788888654 889999999999999999999999999999999999976543
Q ss_pred CCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHH
Q 015513 149 NKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLD 228 (405)
Q Consensus 149 ~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g 228 (405)
......++|+|.||+.+....-..-.-.. ++|.|..++.+ .|.++...|+|+|.+|+.....+..++ .+.|
T Consensus 209 --~~~lRn~tW~LsNlcrgk~P~P~~~~v~~--iLp~L~~ll~~----~D~~Vl~Da~WAlsyLsdg~ne~iq~v-i~~g 279 (514)
T KOG0166|consen 209 --LSMLRNATWTLSNLCRGKNPSPPFDVVAP--ILPALLRLLHS----TDEEVLTDACWALSYLTDGSNEKIQMV-IDAG 279 (514)
T ss_pred --hHHHHHHHHHHHHHHcCCCCCCcHHHHHH--HHHHHHHHHhc----CCHHHHHHHHHHHHHHhcCChHHHHHH-HHcc
Confidence 23478999999999987632222222233 89999999998 999999999999999998888888887 7899
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc-hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHH
Q 015513 229 FFKEMVKLLKENISQQATKSGLHVLLQACPMGG-NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLK 307 (405)
Q Consensus 229 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~-n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~ 307 (405)
+++.||++|.+. +..++..|++++.|++.+.+ ....+++.|++|.|..++.....+.++++|+|+++|++.....+.+
T Consensus 280 vv~~LV~lL~~~-~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiq 358 (514)
T KOG0166|consen 280 VVPRLVDLLGHS-SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQ 358 (514)
T ss_pred chHHHHHHHcCC-CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHH
Confidence 999999999998 78899999999999999665 5555789999999999998643556999999999999986554444
Q ss_pred HHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 308 FREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 308 i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
.+-++|.+|.|+..|....-..+..|+-++.+++... +++....+++.|.|++|+.+|... +...-..+-..|..+.+
T Consensus 359 aVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g-~~~qi~yLv~~giI~plcdlL~~~-D~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 359 AVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSG-TPEQIKYLVEQGIIKPLCDLLTCP-DVKIILVALDGLENILK 436 (514)
T ss_pred HHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccC-CHHHHHHHHHcCCchhhhhcccCC-ChHHHHHHHHHHHHHHH
Confidence 4445799999999665544456666666666666543 367899999999999999999543 44456666677776666
Q ss_pred c
Q 015513 388 V 388 (405)
Q Consensus 388 ~ 388 (405)
+
T Consensus 437 ~ 437 (514)
T KOG0166|consen 437 V 437 (514)
T ss_pred H
Confidence 4
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.2e-23 Score=192.02 Aligned_cols=274 Identities=13% Similarity=0.087 Sum_probs=226.6
Q ss_pred HHHHHHHHHhcch--hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchh
Q 015513 93 DQVRKLVRDLDSG--HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNE 170 (405)
Q Consensus 93 ~~i~~lv~~l~~~--~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~ 170 (405)
.|+..|+.++.++ +.|+.+..++-+++.. +.||..+...|++.++.++-++.+ ...+..|..+|.+++... +
T Consensus 126 ~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskd----irvqrnatgaLlnmThs~-E 199 (550)
T KOG4224|consen 126 LGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKD----IRVQRNATGALLNMTHSR-E 199 (550)
T ss_pred cChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccch----hhHHHHHHHHHHHhhhhh-h
Confidence 4667788777443 8899999999999876 789999999999999999655543 245899999999998654 7
Q ss_pred hHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHH--HHHHHHHHHhhcCChHHHHH
Q 015513 171 NKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLD--FFKEMVKLLKENISQQATKS 248 (405)
Q Consensus 171 ~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g--~i~~Lv~lL~~~~~~~~~~~ 248 (405)
+|+.++..| ++|.||.++.+ ++..+|..+..++.+++.....++... ..| .++.||+|.+++ +++++-.
T Consensus 200 nRr~LV~aG--~lpvLVsll~s----~d~dvqyycttaisnIaVd~~~Rk~La--qaep~lv~~Lv~Lmd~~-s~kvkcq 270 (550)
T KOG4224|consen 200 NRRVLVHAG--GLPVLVSLLKS----GDLDVQYYCTTAISNIAVDRRARKILA--QAEPKLVPALVDLMDDG-SDKVKCQ 270 (550)
T ss_pred hhhhhhccC--Cchhhhhhhcc----CChhHHHHHHHHhhhhhhhHHHHHHHH--hcccchHHHHHHHHhCC-ChHHHHH
Confidence 899999998 99999999999 999999999999999998887777665 445 999999999999 8999999
Q ss_pred HHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccC-h
Q 015513 249 GLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVS-P 327 (405)
Q Consensus 249 a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s-~ 327 (405)
|.-||++|++..+.+..++++|.+|.++++|++. .-...-..+..+.|++-++-|-.-|+ ++|.+.+||++|.... +
T Consensus 271 A~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~-~~plilasVaCIrnisihplNe~lI~-dagfl~pLVrlL~~~dnE 348 (550)
T KOG4224|consen 271 AGLALRNLASDTEYQREIVEAGSLPLLVELLQSP-MGPLILASVACIRNISIHPLNEVLIA-DAGFLRPLVRLLRAGDNE 348 (550)
T ss_pred HHHHHhhhcccchhhhHHHhcCCchHHHHHHhCc-chhHHHHHHHHHhhcccccCccccee-cccchhHHHHHHhcCCch
Confidence 9999999999999999999999999999999874 44455667788889988777766664 4899999999554443 3
Q ss_pred hhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 015513 328 ATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHS 386 (405)
Q Consensus 328 ~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~ 386 (405)
..+=+|+..||+|+..+ +.++..+.++|+|++|..++. +++-..|..-...+..+.
T Consensus 349 eiqchAvstLrnLAass--e~n~~~i~esgAi~kl~eL~l-D~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 349 EIQCHAVSTLRNLAASS--EHNVSVIRESGAIPKLIELLL-DGPVSVQSEISACIAQLA 404 (550)
T ss_pred hhhhhHHHHHHHHhhhh--hhhhHHHhhcCchHHHHHHHh-cCChhHHHHHHHHHHHHH
Confidence 56888999999999643 458999999999999999998 555556655444444443
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.90 E-value=5.6e-23 Score=186.23 Aligned_cols=305 Identities=13% Similarity=0.122 Sum_probs=237.8
Q ss_pred HHHHHHHHhcCCCC-CCCCCCCCchHHHHHHHHHhcch--hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhh
Q 015513 69 RLIQAWCTHNGIDR-IPTPKSALNKDQVRKLVRDLDSG--HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITS 145 (405)
Q Consensus 69 ~~I~~~~~~~~~~~-~~~~~~~~~~~~i~~lv~~l~~~--~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~ 145 (405)
+.=..|...|=.+. ...++..++...++-+++.|+++ +++.+|.|+|.+++.+++..|+.+.+.|++++++.+|.+.
T Consensus 132 qfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss 211 (526)
T COG5064 132 QFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSS 211 (526)
T ss_pred HHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhc
Confidence 33455766652111 12334456788889999999654 8899999999999999999999999999999999999865
Q ss_pred ccCCCchhHHHHHHHHHhcCCCchh--hHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhh
Q 015513 146 YKGNKTTGLEEALRILSLVWSPSNE--NKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLES 223 (405)
Q Consensus 146 ~~~~~~~~~e~A~~~L~~L~~~~~~--~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~ 223 (405)
..+ .....++.|.|.||+.+... ....+. . ++|.|.+++.+ .++++...|+|+|.+|+.....+..++
T Consensus 212 ~~~--ismlRn~TWtLSNlcRGknP~P~w~~is--q--alpiL~KLiys----~D~evlvDA~WAiSYlsDg~~E~i~av 281 (526)
T COG5064 212 AIH--ISMLRNATWTLSNLCRGKNPPPDWSNIS--Q--ALPILAKLIYS----RDPEVLVDACWAISYLSDGPNEKIQAV 281 (526)
T ss_pred cch--HHHHHHhHHHHHHhhCCCCCCCchHHHH--H--HHHHHHHHHhh----cCHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 322 35589999999999975321 122332 2 89999999998 899999999999999999888887777
Q ss_pred cccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc-hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCH
Q 015513 224 TLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG-NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCA 302 (405)
Q Consensus 224 ~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~-n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~ 302 (405)
.+.|..+.||++|.++ +..++..|++.+.|+....+ ....++++|+++.+..+|.+. .+.++.+|+|+++|+...+
T Consensus 282 -ld~g~~~RLvElLs~~-sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGn 358 (526)
T COG5064 282 -LDVGIPGRLVELLSHE-SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGN 358 (526)
T ss_pred -HhcCCcHHHHHHhcCc-cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCC
Confidence 7889999999999998 88899999999999998654 566678999999999999885 6689999999999998766
Q ss_pred hhHHHHHhcccchHHHHHHHHccCh-hhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHH
Q 015513 303 DGRLKFREHAGAIAMVTKRLLRVSP-ATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEI 381 (405)
Q Consensus 303 ~~~~~i~~~~g~i~~Lv~~l~~~s~-~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~l 381 (405)
..+.+.+-+...+|+|+++|-...- ..+|.++++..+.+.+...++..+.+++.|.+.+|..+|... +...-+.|-..
T Consensus 359 teqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~-dNkiiev~LD~ 437 (526)
T COG5064 359 TEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVV-DNKIIEVALDA 437 (526)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhcc-CccchhhhHHH
Confidence 5555555557899999995433222 446777777766666655667899999999999999999742 44455666665
Q ss_pred HHHhhc
Q 015513 382 LRLHSN 387 (405)
Q Consensus 382 l~~l~~ 387 (405)
++.+-+
T Consensus 438 ~eniLk 443 (526)
T COG5064 438 IENILK 443 (526)
T ss_pred HHHHHh
Confidence 554444
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.89 E-value=1.7e-22 Score=183.15 Aligned_cols=280 Identities=14% Similarity=0.103 Sum_probs=231.6
Q ss_pred hHHHHHHHHHhcch--hHHHHHHHHHHH-HHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCc
Q 015513 92 KDQVRKLVRDLDSG--HLRISTLKKMEA-LAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPS 168 (405)
Q Consensus 92 ~~~i~~lv~~l~~~--~~~~~Al~~L~~-l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~ 168 (405)
.++++.|.+.+.+. +.+..|..+.|. |+++.......++++|.||.++.|+.+...+ -.+.+|.|+|.|++++.
T Consensus 70 ~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~---mlqfEAaWalTNiaSGt 146 (526)
T COG5064 70 YSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRD---MLQFEAAWALTNIASGT 146 (526)
T ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchh---HHHHHHHHHHhhhccCc
Confidence 35678888888443 788899999975 4556656677899999999999999654322 23679999999999988
Q ss_pred hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhc-CChHHHH
Q 015513 169 NENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKEN-ISQQATK 247 (405)
Q Consensus 169 ~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~-~~~~~~~ 247 (405)
....+++++.| ++|.++.+|.+ ++.++++.|+|+|.|++.+.+..+.++ ...|++++|+.+|.+. .+....+
T Consensus 147 t~QTkvVvd~~--AVPlfiqlL~s----~~~~V~eQavWALGNiAGDS~~~RD~v-L~~galeplL~ll~ss~~~ismlR 219 (526)
T COG5064 147 TQQTKVVVDAG--AVPLFIQLLSS----TEDDVREQAVWALGNIAGDSEGCRDYV-LQCGALEPLLGLLLSSAIHISMLR 219 (526)
T ss_pred ccceEEEEeCC--chHHHHHHHcC----chHHHHHHHHHHhccccCCchhHHHHH-HhcCchHHHHHHHHhccchHHHHH
Confidence 77788889998 99999999998 899999999999999998888777777 7889999999999875 3458899
Q ss_pred HHHHHHHHhccCC---chhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHc
Q 015513 248 SGLHVLLQACPMG---GNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLR 324 (405)
Q Consensus 248 ~a~~aL~~L~~~~---~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~ 324 (405)
++.|+|.|||... .+...+ .-++|.|.+|+.+. |.++.-.|+|+++.|+..+..+..++-+.|..+.||++|..
T Consensus 220 n~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~ 296 (526)
T COG5064 220 NATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH 296 (526)
T ss_pred HhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC
Confidence 9999999999853 244444 24799999999986 88999999999999998887777776778999999998777
Q ss_pred cChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 325 VSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 325 ~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
.+...+..+++...++...+.. ..+.+++.|+++.+..+|.+ .-+.+|..|.+.+..+..
T Consensus 297 ~sa~iqtPalR~vGNIVTG~D~--QTqviI~~G~L~a~~~lLs~-~ke~irKEaCWTiSNITA 356 (526)
T COG5064 297 ESAKIQTPALRSVGNIVTGSDD--QTQVIINCGALKAFRSLLSS-PKENIRKEACWTISNITA 356 (526)
T ss_pred ccccccCHHHHhhcCeeecCcc--ceehheecccHHHHHHHhcC-hhhhhhhhhheeeccccc
Confidence 7778888999999999876654 57888999999999999874 456888888888776654
No 9
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.87 E-value=1.1e-22 Score=149.74 Aligned_cols=72 Identities=42% Similarity=0.892 Sum_probs=61.8
Q ss_pred CCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcC
Q 015513 6 VPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTHNG 79 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~~~ 79 (405)
+|++|+||||+++|+|||++++||||||.+|++|+.++ +.+||.|++++.. .++.||..|++.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~-~~~~P~t~~~l~~-~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQN-GGTDPFTRQPLSE-SDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTT-SSB-TTT-SB-SG-GGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcC-CCCCCCCCCcCCc-ccceECHHHHHHHHHHHHHcc
Confidence 69999999999999999999999999999999999873 6899999999986 899999999999999999874
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.77 E-value=2.8e-16 Score=160.80 Aligned_cols=256 Identities=16% Similarity=0.144 Sum_probs=209.7
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHH
Q 015513 106 HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGA 185 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~ 185 (405)
.....++..|-+++. +..++..+.+.|.|+.|+++|.+. +.+....++++|..|+... ++|..+.+.| +++.
T Consensus 264 qLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~----n~ellil~v~fLkkLSi~~-ENK~~m~~~g--iV~k 335 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRE----NEELLILAVTFLKKLSIFK-ENKDEMAESG--IVEK 335 (708)
T ss_pred HHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCH-HHHHHHHHcC--CHHH
Confidence 444567777888884 778888999999999999999754 2355788999999999886 6899999988 9999
Q ss_pred HHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHH
Q 015513 186 LMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVK 265 (405)
Q Consensus 186 Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~ 265 (405)
|++++.+ ++.+.+..+.++|+|||.+.+.+..++ +.|++|.|+.+|.++ ..+..++.+|++||..+++|..
T Consensus 336 L~kLl~s----~~~~l~~~aLrlL~NLSfd~~~R~~mV--~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~ 406 (708)
T PF05804_consen 336 LLKLLPS----ENEDLVNVALRLLFNLSFDPELRSQMV--SLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSM 406 (708)
T ss_pred HHHHhcC----CCHHHHHHHHHHHHHhCcCHHHHHHHH--HCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHH
Confidence 9999998 889999999999999999999888876 789999999999865 4567799999999999999999
Q ss_pred HHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCC
Q 015513 266 ITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSA 345 (405)
Q Consensus 266 ~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~ 345 (405)
+...++||.|+++|.++++..+...+++++.||+....+.+.+.+ +||++.|++..++..+ ......+++++.+.+
T Consensus 407 f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~-g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~ 482 (708)
T PF05804_consen 407 FAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCE-GNGLQSLMKRALKTRD---PLLLKLIRNISQHDG 482 (708)
T ss_pred HhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh-cCcHHHHHHHHHhccc---HHHHHHHHHHHhcCc
Confidence 999999999999988876677788899999999999988877765 6899999997655332 334578999998864
Q ss_pred CHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 015513 346 TYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHS 386 (405)
Q Consensus 346 ~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~ 386 (405)
. .+. +. .+.+..|+..+....++...-.+-.+|.++.
T Consensus 483 ~--~k~-~f-~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 483 P--LKE-LF-VDFIGDLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred h--HHH-HH-HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 3 233 33 3589999999876556666666666666554
No 11
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.73 E-value=3.4e-18 Score=122.74 Aligned_cols=63 Identities=51% Similarity=0.907 Sum_probs=59.0
Q ss_pred cccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 015513 9 YFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAW 74 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~ 74 (405)
+|.||||+++|+|||+++|||+|||.||.+|+.+ +.+||.|+++++. .++++|..|++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~~-~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS--HGTDPVTGQPLTH-EDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCCh-hhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999976 4689999999976 8999999999999987
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.73 E-value=7.5e-16 Score=157.71 Aligned_cols=216 Identities=14% Similarity=0.106 Sum_probs=178.1
Q ss_pred hHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHH
Q 015513 153 GLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKE 232 (405)
Q Consensus 153 ~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~ 232 (405)
....++.+|.||+.+. ..+..+...| .++.|+++|.+ ++.+....++.+|.+||...+++..+. +.|++++
T Consensus 265 Llrv~~~lLlNLAed~-~ve~kM~~~~--iV~~Lv~~Ldr----~n~ellil~v~fLkkLSi~~ENK~~m~--~~giV~k 335 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDP-RVELKMVNKG--IVSLLVKCLDR----ENEELLILAVTFLKKLSIFKENKDEMA--ESGIVEK 335 (708)
T ss_pred HHHHHHHHHHHHhcCh-HHHHHHHhcC--CHHHHHHHHcC----CCHHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHH
Confidence 3567888999999776 5666777777 99999999998 899999999999999999999999887 7799999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcc
Q 015513 233 MVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHA 312 (405)
Q Consensus 233 Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~ 312 (405)
|++++.++ +.+....++++|+|||.++++|..|++.|+||.|+.+|.++ ..+..++.+|++|+...++|..+.. .
T Consensus 336 L~kLl~s~-~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~f~~-T 410 (708)
T PF05804_consen 336 LLKLLPSE-NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSMFAY-T 410 (708)
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHHHhh-c
Confidence 99999988 88999999999999999999999999999999999999753 5678899999999999999998866 4
Q ss_pred cchHHHHHHHHccChh-hhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhccc
Q 015513 313 GAIAMVTKRLLRVSPA-TNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVW 389 (405)
Q Consensus 313 g~i~~Lv~~l~~~s~~-~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~ 389 (405)
+++|.+++.++..+.. .....++++.+|+.. +.+.+.|.+.|+++.|+.......++- .-.++|+++.+.
T Consensus 411 dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~---~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~ 481 (708)
T PF05804_consen 411 DCIPQLMQMLLENSEEEVQLELIALLINLALN---KRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHD 481 (708)
T ss_pred chHHHHHHHHHhCCCccccHHHHHHHHHHhcC---HHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcC
Confidence 6999999988776443 333456666667654 457889999899999998876433322 223556665553
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=2.9e-13 Score=123.35 Aligned_cols=280 Identities=17% Similarity=0.195 Sum_probs=214.2
Q ss_pred chHHHHHHHHHh----cchhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCC
Q 015513 91 NKDQVRKLVRDL----DSGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWS 166 (405)
Q Consensus 91 ~~~~i~~lv~~l----~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~ 166 (405)
+..++.-++..| .+.+.-...+..++.-+-.++.||..+++.++.+.+...|..... .....++.+++..|..
T Consensus 143 da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk---~~~VRel~~a~r~l~~ 219 (461)
T KOG4199|consen 143 DAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGK---TRTVRELYDAIRALLT 219 (461)
T ss_pred ccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCc---cHHHHHHHHHHHHhcC
Confidence 344444445554 234667778888998888999999999999999999988865422 2347888899999887
Q ss_pred Cch---------hhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHH
Q 015513 167 PSN---------ENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLL 237 (405)
Q Consensus 167 ~~~---------~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL 237 (405)
+++ ...+.++..| ++..|++.|.. +-++.+...+..+|..|+..++....|. +.|++..|++++
T Consensus 220 dDDiRV~fg~ah~hAr~ia~e~--~l~~L~Eal~A---~~dp~~L~~l~~tl~~lAVr~E~C~~I~--e~GGl~tl~~~i 292 (461)
T KOG4199|consen 220 DDDIRVVFGQAHGHARTIAKEG--ILTALTEALQA---GIDPDSLVSLSTTLKALAVRDEICKSIA--ESGGLDTLLRCI 292 (461)
T ss_pred CCceeeecchhhHHHHHHHHhh--hHHHHHHHHHc---cCCccHHHHHHHHHHHHHHHHHHHHHHH--HccCHHHHHHHH
Confidence 764 2345566666 78889999997 3678889999999999999999999887 789999999999
Q ss_pred hhcCCh---HHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCC-CCCcHHHHHHHHHHHh-cCHhhHHHHHhcc
Q 015513 238 KENISQ---QATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKP-EKSTTELIFNLLAQLC-SCADGRLKFREHA 312 (405)
Q Consensus 238 ~~~~~~---~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~-~~~~~e~a~~~L~~L~-~~~~~~~~i~~~~ 312 (405)
.+.... ...+.++..|+.|+.+++++..+|+.|+.+.++.++.... ++.+.+.++.++..|| +.+++..++++ +
T Consensus 293 ~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~ 371 (461)
T KOG4199|consen 293 DDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE-A 371 (461)
T ss_pred hhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-c
Confidence 874233 3557889999999999999999999999999999986543 6778899999999999 56777777766 6
Q ss_pred cchHHHHHHHHccC--hhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 015513 313 GAIAMVTKRLLRVS--PATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLH 385 (405)
Q Consensus 313 g~i~~Lv~~l~~~s--~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l 385 (405)
|+-...|+.|.... ...+.++...++++...+.+ ++..++..| +++|+..-.+. .+.-+..|...||=|
T Consensus 372 G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~--~~~~~l~~G-iE~Li~~A~~~-h~tce~~akaALRDL 442 (461)
T KOG4199|consen 372 GAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE--NRTILLANG-IEKLIRTAKAN-HETCEAAAKAALRDL 442 (461)
T ss_pred chHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh--ccchHHhcc-HHHHHHHHHhc-CccHHHHHHHHHHhc
Confidence 66677777554432 25577888888998876554 566667655 78888877643 444566666677744
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.58 E-value=1.1e-13 Score=144.64 Aligned_cols=268 Identities=16% Similarity=0.057 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCC--------chhHHHHHHHHHhcCCCchhhHHhhcccch
Q 015513 109 ISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNK--------TTGLEEALRILSLVWSPSNENKALVDHHNQ 180 (405)
Q Consensus 109 ~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~--------~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~ 180 (405)
+.|+..|-.++ .+++.|..+-+.|++.++..||.-.+..+. ..++..|..+|.||+.++..+|..+....
T Consensus 316 caA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r- 393 (2195)
T KOG2122|consen 316 CAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR- 393 (2195)
T ss_pred HHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh-
Confidence 36777776655 578999999999999999998865433221 13478899999999999988998888665
Q ss_pred hHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhh-ccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccC
Q 015513 181 DLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELA-SKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPM 259 (405)
Q Consensus 181 ~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~-~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~ 259 (405)
+.++.+|..|.+ ...++.+--+.+|+||+=.. .+-..+. .+.|-+..|+...-........++.+.|||||+.+
T Consensus 394 gfMeavVAQL~s----~peeL~QV~AsvLRNLSWRAD~nmKkvL-rE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAH 468 (2195)
T KOG2122|consen 394 GFMEAVVAQLIS----APEELLQVYASVLRNLSWRADSNMKKVL-RETGSVTALAACALRNKKESTLKAVLSALWNLSAH 468 (2195)
T ss_pred hHHHHHHHHHhc----ChHHHHHHHHHHHHhccccccccHHHHH-HhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhc
Confidence 499999999998 67788888999999998443 3333343 57788888888654433557889999999999985
Q ss_pred -CchhHHHHh-hcchHHHHHHhhcCC---CCCcHHHHHHHHHHHhc----CHhhHHHHHhcccchHHHHHHHHccChhhh
Q 015513 260 -GGNRVKITE-ANAVFELIELELTKP---EKSTTELIFNLLAQLCS----CADGRLKFREHAGAIAMVTKRLLRVSPATN 330 (405)
Q Consensus 260 -~~n~~~~v~-~g~v~~Lv~lL~~~~---~~~~~e~a~~~L~~L~~----~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~ 330 (405)
.+|+..|.. .|++..||.+|.-.. .-.+.|.|-++|.|.+. +.+.|+-+ .....+..|++.|...+-.+.
T Consensus 469 cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQIL-R~~NCLq~LLQ~LKS~SLTiV 547 (2195)
T KOG2122|consen 469 CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQIL-RRHNCLQTLLQHLKSHSLTIV 547 (2195)
T ss_pred ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHH-HHhhHHHHHHHHhhhcceEEe
Confidence 589999876 699999999997531 34688999999998764 34445544 445699999998777777888
Q ss_pred HHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 015513 331 DRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHS 386 (405)
Q Consensus 331 e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~ 386 (405)
.++.++||+|+-.++. .++.+.+.|+|+.|..|+++.......-.|+.+.++|.
T Consensus 548 SNaCGTLWNLSAR~p~--DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 548 SNACGTLWNLSARSPE--DQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred ecchhhhhhhhcCCHH--HHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 9999999999976553 57888899999999999997555555555555555544
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1.2e-12 Score=119.49 Aligned_cols=269 Identities=14% Similarity=0.111 Sum_probs=210.4
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHH
Q 015513 106 HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGA 185 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~ 185 (405)
....++|..|-.+.... ..+.++-+...++.+|....++. ++....+..+..-+...+.+|..+++.+ +++.
T Consensus 122 ~~l~ksL~al~~lt~~q----pdl~da~g~~vvv~lL~~~~~~~--dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~--il~L 193 (461)
T KOG4199|consen 122 SVLKKSLEAINSLTHKQ----PDLFDAEAMAVVLKLLALKVESE--EVTLLTLQWLQKACIMHEVNRQLFMELK--ILEL 193 (461)
T ss_pred hHHHHHHHHHHHhhcCC----cchhccccHHHHHHHHhcccchH--HHHHHHHHHHHHHHHHhHHHHHHHHHhh--HHHH
Confidence 56667777777766543 34667888999999997554332 2234444555555556678899999998 8888
Q ss_pred HHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhh--------cccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 015513 186 LMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLES--------TLNLDFFKEMVKLLKENISQQATKSGLHVLLQAC 257 (405)
Q Consensus 186 Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~--------~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~ 257 (405)
+...|..+ +...+...+.+++..|..+++.+...+ ....|++..|++.++-+.+|........+|..|+
T Consensus 194 i~~~l~~~---gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 194 ILQVLNRE---GKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHccc---CccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence 88777652 555677788899999987776554322 1356788999999998878999999999999999
Q ss_pred cCCchhHHHHhhcchHHHHHHhhcCCCCC---cHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccC--hhhhHH
Q 015513 258 PMGGNRVKITEANAVFELIELELTKPEKS---TTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVS--PATNDR 332 (405)
Q Consensus 258 ~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~---~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s--~~~~e~ 332 (405)
-.++-++.+++.|++..|++++.+.++.. +...++.+|..|+.+++.+..|++ .||.+.++.++.+.+ +..-+.
T Consensus 271 Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~-~gg~~~ii~l~~~h~~~p~Vi~~ 349 (461)
T KOG4199|consen 271 VRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVE-KGGLDKIITLALRHSDDPLVIQE 349 (461)
T ss_pred HHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHH-hcChHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999998843433 456789999999999999999987 789999999877764 456677
Q ss_pred HHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccC-cHHHHHHHHHHHHHhhcc
Q 015513 333 AVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADC-EKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 333 a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~-~~~~k~~A~~ll~~l~~~ 388 (405)
+..++..||-.+++ ....+++.|+-...+..|..++ ...++++|++++|++...
T Consensus 350 ~~a~i~~l~LR~pd--hsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r 404 (461)
T KOG4199|consen 350 VMAIISILCLRSPD--HSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR 404 (461)
T ss_pred HHHHHHHHHhcCcc--hHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 77888888887776 5888999999999999998876 467889999999987664
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.50 E-value=1.7e-12 Score=118.52 Aligned_cols=197 Identities=15% Similarity=0.115 Sum_probs=169.2
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
.+..|+.+|++ ..++.+++.|..++.+.+..+.++..+. +.|+++.+.++|.++ ++.+++.|+.+|.|++.+.+
T Consensus 13 ~l~~Ll~lL~~---t~dp~i~e~al~al~n~aaf~~nq~~Ir--~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 13 ELQKLLCLLES---TEDPFIQEKALIALGNSAAFPFNQDIIR--DLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDE 86 (254)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHhhccChhHHHHHH--HcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChh
Confidence 78999999996 2789999999999999998887777776 789999999999998 99999999999999999999
Q ss_pred hhHHHHhhcchHHHHHHhhcCC-CCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHh
Q 015513 262 NRVKITEANAVFELIELELTKP-EKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSI 340 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~~~-~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L 340 (405)
|+..+-. .++.+.+.+.+.+ +..++..++.+|.+|+...+.+..+. ..++.++.+|..++...+..++.+|.+|
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 9988643 6888888776643 56788899999999998887777764 3799999987777788888899999888
Q ss_pred cccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccCCC
Q 015513 341 SKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWNNS 392 (405)
Q Consensus 341 ~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~~~ 392 (405)
+.. +...++++.++++..++.+++.+.+...-..+-.++..+.++++..
T Consensus 162 S~n---p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 162 SEN---PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred ccC---HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 865 4578999999999999999997777788888899999998887655
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.49 E-value=2.4e-12 Score=117.57 Aligned_cols=195 Identities=13% Similarity=0.120 Sum_probs=160.2
Q ss_pred CchHHHHHHHHHhc---chhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCC
Q 015513 90 LNKDQVRKLVRDLD---SGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWS 166 (405)
Q Consensus 90 ~~~~~i~~lv~~l~---~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~ 166 (405)
++...+..|+..|. ++..+..|+.++.+.+. .+.++..+.+.|+++.+.++|.+++ ...++.|+.+|.|++.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~----~~vr~~AL~aL~Nls~ 83 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPN----PSVREKALNALNNLSV 83 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCC----hHHHHHHHHHHHhcCC
Confidence 45677888888773 46789999999998764 6789999999999999999998653 3558999999999987
Q ss_pred CchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHH
Q 015513 167 PSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQAT 246 (405)
Q Consensus 167 ~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~ 246 (405)
+. +++..|. . .++.+.+.+.+.. -+.+.|..+..+|.+|+..++....+. +.++.|+++|.+| +..++
T Consensus 84 ~~-en~~~Ik-~---~i~~Vc~~~~s~~--lns~~Q~agLrlL~nLtv~~~~~~~l~----~~i~~ll~LL~~G-~~~~k 151 (254)
T PF04826_consen 84 ND-ENQEQIK-M---YIPQVCEETVSSP--LNSEVQLAGLRLLTNLTVTNDYHHMLA----NYIPDLLSLLSSG-SEKTK 151 (254)
T ss_pred Ch-hhHHHHH-H---HHHHHHHHHhcCC--CCCHHHHHHHHHHHccCCCcchhhhHH----hhHHHHHHHHHcC-ChHHH
Confidence 75 5666653 2 5777777655522 467889999999999988776655544 6799999999998 89999
Q ss_pred HHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcC
Q 015513 247 KSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSC 301 (405)
Q Consensus 247 ~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~ 301 (405)
..++++|.||+.++.+...++.+.+++.++.++....+.++...++....||..+
T Consensus 152 ~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 152 VQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998754567788888888888653
No 18
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.49 E-value=1.3e-12 Score=131.48 Aligned_cols=288 Identities=13% Similarity=0.049 Sum_probs=216.4
Q ss_pred HHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchh
Q 015513 93 DQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNE 170 (405)
Q Consensus 93 ~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~ 170 (405)
-.+++.+..+.+ +..|..|...|..++..+.+.|..+.+.|+|+.||.+|.+.. .+++..|.++|.||......
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~----~evq~~acgaLRNLvf~~~~ 308 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRN----DEVQRQACGALRNLVFGKST 308 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCc----HHHHHHHHHHHHhhhcccCC
Confidence 356667777743 588889999999999999999999999999999999998653 35689999999999876544
Q ss_pred --hHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcC-------
Q 015513 171 --NKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENI------- 241 (405)
Q Consensus 171 --~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~------- 241 (405)
+|-.|.+.+ +|+.++++|+. -+|.++++....+|+||++.+.-+..+. ..++..|-+-+-.+.
T Consensus 309 ~~NKlai~~~~--Gv~~l~~~Lr~---t~D~ev~e~iTg~LWNLSS~D~lK~~ii---~~al~tLt~~vI~P~Sgw~~~~ 380 (717)
T KOG1048|consen 309 DSNKLAIKELN--GVPTLVRLLRH---TQDDEVRELITGILWNLSSNDALKMLII---TSALSTLTDNVIIPHSGWEEEP 380 (717)
T ss_pred cccchhhhhcC--ChHHHHHHHHh---hcchHHHHHHHHHHhcccchhHHHHHHH---HHHHHHHHHhhcccccccCCCC
Confidence 888888888 89999999996 2799999999999999999977776665 367777777653321
Q ss_pred ------ChHHHHHHHHHHHHhcc-CCchhHHHHh-hcchHHHHHHhhc-----CCCCCcHHHHHHHHHHHhcCHh-----
Q 015513 242 ------SQQATKSGLHVLLQACP-MGGNRVKITE-ANAVFELIELELT-----KPEKSTTELIFNLLAQLCSCAD----- 303 (405)
Q Consensus 242 ------~~~~~~~a~~aL~~L~~-~~~n~~~~v~-~g~v~~Lv~lL~~-----~~~~~~~e~a~~~L~~L~~~~~----- 303 (405)
+..+..++..+|+|+++ +.+.|.+|-+ .|.|..|+..++. ..+....|+++.+|.||..--+
T Consensus 381 ~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~ 460 (717)
T KOG1048|consen 381 APRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPP 460 (717)
T ss_pred cccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCH
Confidence 25677899999999999 7789999977 6999999999873 1256779999999999975322
Q ss_pred h-HHHHHh----------------------------------c----ccch-----HHHHHH---HHc--cChhhhHHHH
Q 015513 304 G-RLKFRE----------------------------------H----AGAI-----AMVTKR---LLR--VSPATNDRAV 334 (405)
Q Consensus 304 ~-~~~i~~----------------------------------~----~g~i-----~~Lv~~---l~~--~s~~~~e~a~ 334 (405)
. +..... + ..|+ |.+|+. ++. ......|.++
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasa 540 (717)
T KOG1048|consen 461 KYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASA 540 (717)
T ss_pred hhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhh
Confidence 0 000000 0 0000 123331 111 1346789999
Q ss_pred HHHHHhcccCC--CHHHHHHH-HhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccCCCC
Q 015513 335 HILSSISKFSA--TYEVVLEM-LSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWNNSP 393 (405)
Q Consensus 335 ~~L~~L~~~~~--~~~~~~~~-~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~ 393 (405)
++|-+|+-... ....+..+ .+..+.+.|+.+|+.+ .+.+...++.+|++|+...++.+
T Consensus 541 GaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~rnk~ 601 (717)
T KOG1048|consen 541 GALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDIRNKE 601 (717)
T ss_pred hhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCchhhh
Confidence 99999987643 23456666 5778999999999965 66777888888998888765443
No 19
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.45 E-value=3.8e-14 Score=91.75 Aligned_cols=40 Identities=38% Similarity=0.745 Sum_probs=31.6
Q ss_pred CcCCcccCCCccccCCCCcccHHHHHHHHhcCCC--CCCCCC
Q 015513 12 CPISLQIMKDPVTAITGISYDRESIEKWLKTAKD--TTCPVT 51 (405)
Q Consensus 12 Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~--~~cP~~ 51 (405)
||||.++|+|||+++|||+||+.||++||+..+. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999999986422 469986
No 20
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.37 E-value=7.4e-12 Score=126.10 Aligned_cols=196 Identities=19% Similarity=0.161 Sum_probs=160.7
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccC--
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPM-- 259 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~-- 259 (405)
-+|..+.+|.+ .++..|.+|+..|..++-.++..+.-+ ...|+|+.||.+|++. +.++++.|++||+||...
T Consensus 234 ~lpe~i~mL~~----q~~~~qsnaaaylQHlcfgd~~ik~~v-rqlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~ 307 (717)
T KOG1048|consen 234 TLPEVISMLMS----QDPSVQSNAAAYLQHLCFGDNKIKSRV-RQLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKS 307 (717)
T ss_pred ccHHHHHHHhc----cChhhhHHHHHHHHHHHhhhHHHHHHH-HHhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccC
Confidence 57888899998 899999999999999997766555444 5789999999999998 899999999999999973
Q ss_pred -CchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHcc-C-----------
Q 015513 260 -GGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRV-S----------- 326 (405)
Q Consensus 260 -~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~-s----------- 326 (405)
++|+..+.+.|.||.|+++|+...|.++++...++|+||++++.-+..++.+ ++..|...+... +
T Consensus 308 ~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~--al~tLt~~vI~P~Sgw~~~~~~~~~ 385 (717)
T KOG1048|consen 308 TDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS--ALSTLTDNVIIPHSGWEEEPAPRKA 385 (717)
T ss_pred CcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH--HHHHHHHhhcccccccCCCCccccc
Confidence 3589999999999999999997448899999999999999887777777654 678887765543 2
Q ss_pred --hhhhHHHHHHHHHhcccCCCHHHHHHHHh-cChHHHHHHHHh-----ccCcHHHHHHHHHHHHHhhc
Q 015513 327 --PATNDRAVHILSSISKFSATYEVVLEMLS-VGAVSKLCMVTQ-----ADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 327 --~~~~e~a~~~L~~L~~~~~~~~~~~~~~~-~G~v~~Ll~ll~-----~~~~~~~k~~A~~ll~~l~~ 387 (405)
...-.++.++|.+++... .+.++.|.+ .|.|..|+..++ +++++..-+++..+|+.++-
T Consensus 386 ~~~~vf~n~tgcLRNlSs~~--~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSY 452 (717)
T KOG1048|consen 386 EDSTVFRNVTGCLRNLSSAG--QEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSY 452 (717)
T ss_pred ccceeeehhhhhhccccchh--HHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCc
Confidence 122346788898888543 457888875 678999999987 35678888999999998864
No 21
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.28 E-value=4.5e-12 Score=121.30 Aligned_cols=70 Identities=17% Similarity=0.324 Sum_probs=62.9
Q ss_pred CCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHh
Q 015513 5 EVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTH 77 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~ 77 (405)
.+...|.||||.++|.+||+++|||+||..||.+|+.. ...||.|+..+.. ..+.+|..|.++|+.|...
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~--~~~CP~Cr~~~~~-~~Lr~N~~L~~iVe~~~~~ 91 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN--QPKCPLCRAEDQE-SKLRSNWLVSEIVESFKNL 91 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC--CCCCCCCCCcccc-ccCccchHHHHHHHHHHHh
Confidence 46678999999999999999999999999999999975 3589999999976 7899999999999999664
No 22
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.26 E-value=3.9e-12 Score=108.70 Aligned_cols=61 Identities=26% Similarity=0.486 Sum_probs=51.3
Q ss_pred CCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcC--------------CCCCCCCCCCCCCCCCCCcccHH
Q 015513 5 EVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTA--------------KDTTCPVTKQPLPRDSGLTSNHT 66 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~--------------~~~~cP~~~~~~~~~~~~~~n~~ 66 (405)
...++|.||||++.++|||+++|||.||+.||.+|+... +...||.|+.+++. ..++|...
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~-~~LvPiyg 88 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE-ATLVPIYG 88 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh-hcEEEeec
Confidence 456789999999999999999999999999999998521 13579999999976 77887653
No 23
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.25 E-value=7.5e-11 Score=124.11 Aligned_cols=228 Identities=13% Similarity=0.079 Sum_probs=179.2
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHH-hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcC-CCchhhHHhhcccchhHH
Q 015513 106 HLRISTLKKMEALAMENERNRKSLEE-AFVVRALVLFIITSYKGNKTTGLEEALRILSLVW-SPSNENKALVDHHNQDLI 183 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~~-~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~-~~~~~~~~~i~~~g~~~i 183 (405)
..+.+|+.+|-+|.-.+..||..+.. -|.++.+|.-|.+... ++......+|.||+ ..+...|+++.+.| .+
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pe----eL~QV~AsvLRNLSWRAD~nmKkvLrE~G--sV 439 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPE----ELLQVYASVLRNLSWRADSNMKKVLRETG--SV 439 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChH----HHHHHHHHHHHhccccccccHHHHHHhhh--hH
Confidence 67888999999999988889888876 6999999999976421 23455668999995 45556788888888 66
Q ss_pred HHHHH-HHhhhcCCCcHHhHHHHHHHHHHHHhhh-ccchhhhcccHHHHHHHHHHHhhc---CChHHHHHHHHHHHHhcc
Q 015513 184 GALMW-VLQWENNDRHVAVKTSAMIVLKMVLELA-SKGLLESTLNLDFFKEMVKLLKEN---ISQQATKSGLHVLLQACP 258 (405)
Q Consensus 184 ~~Lv~-lL~~~~~~~~~~~~~~A~~~L~~L~~~~-~~~~~i~~~~~g~i~~Lv~lL~~~---~~~~~~~~a~~aL~~L~~ 258 (405)
..|+. .|+. ...........+|+||+.+. +||..|. ...|++..||.+|.-. ......+.|-..|+|+++
T Consensus 440 taLa~~al~~----~kEsTLKavLSALWNLSAHcteNKA~iC-aVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS 514 (2195)
T KOG2122|consen 440 TALAACALRN----KKESTLKAVLSALWNLSAHCTENKAEIC-AVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSS 514 (2195)
T ss_pred HHHHHHHHHh----cccchHHHHHHHHhhhhhcccccchhhh-cccchHHHHHhhccccCCcchhhhhhcCccHHHHHHh
Confidence 66664 5554 45566778889999998765 6777777 5579999999999742 245678999999999876
Q ss_pred ----CCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc-CHhhHHHHHhcccchHHHHHHHHccChhhhHHH
Q 015513 259 ----MGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS-CADGRLKFREHAGAIAMVTKRLLRVSPATNDRA 333 (405)
Q Consensus 259 ----~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a 333 (405)
+++.|..+.+.+++..|+..|++. +-.+.-+++++||||.. +++.++.+.+ .|+|+.|-.+|........+-+
T Consensus 515 ~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNaCGTLWNLSAR~p~DQq~LwD-~gAv~mLrnLIhSKhkMIa~GS 592 (2195)
T KOG2122|consen 515 LIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARSPEDQQMLWD-DGAVPMLRNLIHSKHKMIAMGS 592 (2195)
T ss_pred HhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecchhhhhhhhcCCHHHHHHHHh-cccHHHHHHHHhhhhhhhhhhH
Confidence 456788888999999999999986 66788999999999985 5666766654 7899999996654455667778
Q ss_pred HHHHHHhcccCCC
Q 015513 334 VHILSSISKFSAT 346 (405)
Q Consensus 334 ~~~L~~L~~~~~~ 346 (405)
+.+|.+|-++-+.
T Consensus 593 aaALrNLln~RPA 605 (2195)
T KOG2122|consen 593 AAALRNLLNFRPA 605 (2195)
T ss_pred HHHHHHHhcCCch
Confidence 8899998887653
No 24
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.22 E-value=6.9e-11 Score=95.64 Aligned_cols=115 Identities=19% Similarity=0.143 Sum_probs=100.0
Q ss_pred cccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhh-hccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 015513 176 DHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLEL-ASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLL 254 (405)
Q Consensus 176 ~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~-~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~ 254 (405)
.+.| +++.|+.+|.+ ++...+..|+++|.+++.. ++....+. +.|+++.|+++|.++ ++.++..++++|.
T Consensus 4 ~~~~--~i~~l~~~l~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~~~i~~l~~~l~~~-~~~v~~~a~~~L~ 74 (120)
T cd00020 4 IQAG--GLPALVSLLSS----SDENVQREAAWALSNLSAGNNDNIQAVV--EAGGLPALVQLLKSE-DEEVVKAALWALR 74 (120)
T ss_pred HHcC--ChHHHHHHHHc----CCHHHHHHHHHHHHHHhcCCHHHHHHHH--HCCChHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 4556 89999999998 7899999999999999987 44444444 569999999999997 8999999999999
Q ss_pred HhccCC-chhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc
Q 015513 255 QACPMG-GNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS 300 (405)
Q Consensus 255 ~L~~~~-~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~ 300 (405)
+|+.+. ..+..+++.|+++.|++++.+. +..+++.++++|.+|+.
T Consensus 75 ~l~~~~~~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 75 NLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHccCcHHHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 999976 4677788899999999999886 78899999999999973
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.20 E-value=1.4e-10 Score=93.86 Aligned_cols=114 Identities=15% Similarity=0.176 Sum_probs=99.3
Q ss_pred cHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccC-CchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhh
Q 015513 226 NLDFFKEMVKLLKENISQQATKSGLHVLLQACPM-GGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADG 304 (405)
Q Consensus 226 ~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~-~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~ 304 (405)
+.|+++.|+++|.++ ++..+..++.+|.+++.+ ++++..+++.|++|.|+++|.+. +..+++.++++|.+|+.....
T Consensus 5 ~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 5 QAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcHH
Confidence 568999999999988 899999999999999997 67888999999999999999985 789999999999999987755
Q ss_pred HHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhc
Q 015513 305 RLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSIS 341 (405)
Q Consensus 305 ~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~ 341 (405)
........|+++.|++.+...+...++.+..+|.+|+
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 4444455789999999776666788888988888876
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.19 E-value=2.3e-08 Score=101.24 Aligned_cols=292 Identities=18% Similarity=0.184 Sum_probs=210.8
Q ss_pred HHHHHHHHhc--chhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhh
Q 015513 94 QVRKLVRDLD--SGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNEN 171 (405)
Q Consensus 94 ~i~~lv~~l~--~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~ 171 (405)
..+.|.+.+. ++.++.-+++.|+.++.+++.....+.+.+.++.++.+|.+.+ ..+.+.|..+|..|+......
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d----~~Va~~A~~~L~~l~~~~~~~ 153 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPD----LSVAKAAIKALKKLASHPEGL 153 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCc----HHHHHHHHHHHHHHhCCchhH
Confidence 3444555554 3588888999999998877776777888999999999997543 345789999999999876554
Q ss_pred HHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHH
Q 015513 172 KALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLH 251 (405)
Q Consensus 172 ~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~ 251 (405)
. .+...+ .+..|..++.. .+...|.++..++.+++...+...... .+.|+++.+++.|++. |.-++.+++.
T Consensus 154 ~-~l~~~~--~~~~L~~l~~~----~~~~vR~Rv~el~v~i~~~S~~~~~~~-~~sgll~~ll~eL~~d-DiLvqlnale 224 (503)
T PF10508_consen 154 E-QLFDSN--LLSKLKSLMSQ----SSDIVRCRVYELLVEIASHSPEAAEAV-VNSGLLDLLLKELDSD-DILVQLNALE 224 (503)
T ss_pred H-HHhCcc--hHHHHHHHHhc----cCHHHHHHHHHHHHHHHhcCHHHHHHH-HhccHHHHHHHHhcCc-cHHHHHHHHH
Confidence 3 454555 68889898886 688899999999999987766555555 5679999999999996 8999999999
Q ss_pred HHHHhccCCchhHHHHhhcchHHHHHHhhc----------------------------------------------CCCC
Q 015513 252 VLLQACPMGGNRVKITEANAVFELIELELT----------------------------------------------KPEK 285 (405)
Q Consensus 252 aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~----------------------------------------------~~~~ 285 (405)
.|..|+..+.+...+.+.|+++.|..++.. ..|.
T Consensus 225 ll~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~ 304 (503)
T PF10508_consen 225 LLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDP 304 (503)
T ss_pred HHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCCh
Confidence 999999988999999999999999988731 1245
Q ss_pred CcHHHHHHHHHHHhcCHhhHHHH-HhcccchHHHHHHHHcc----ChhhhHHHHHHHHHhcccCCC---HH---HHHHH-
Q 015513 286 STTELIFNLLAQLCSCADGRLKF-REHAGAIAMVTKRLLRV----SPATNDRAVHILSSISKFSAT---YE---VVLEM- 353 (405)
Q Consensus 286 ~~~e~a~~~L~~L~~~~~~~~~i-~~~~g~i~~Lv~~l~~~----s~~~~e~a~~~L~~L~~~~~~---~~---~~~~~- 353 (405)
..+..|+.+|+.++.+.+|+..+ ....+.+...++.+... +.+.+-.++.+|..+-....+ ++ ..+..
T Consensus 305 ~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~ 384 (503)
T PF10508_consen 305 TIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWY 384 (503)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 56677888999999999999888 55555666666644332 223455666666666332222 11 11221
Q ss_pred --HhcChHH-HHHHHHhccCcHHHHHHHHHHHHHhhcc-cC-----CCCCcchhh
Q 015513 354 --LSVGAVS-KLCMVTQADCEKYLKDRAKEILRLHSNV-WN-----NSPCIQVYL 399 (405)
Q Consensus 354 --~~~G~v~-~Ll~ll~~~~~~~~k~~A~~ll~~l~~~-~~-----~~~~~~~~~ 399 (405)
...+-.. .++.+++ .+-+++|-.|-.+|+.+..+ |. .+|.|--|+
T Consensus 385 ~~~~~~~~~~~l~~~~~-qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~l 438 (503)
T PF10508_consen 385 ESLSGSPLSNLLMSLLK-QPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYL 438 (503)
T ss_pred HHhcCCchHHHHHHHhc-CCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhh
Confidence 1223333 5566665 45689999999999877664 53 444444444
No 27
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=99.12 E-value=2e-11 Score=84.27 Aligned_cols=44 Identities=32% Similarity=0.733 Sum_probs=32.8
Q ss_pred cccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCCCC
Q 015513 9 YFICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPVTK 52 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~ 52 (405)
.|+||||++.|+|||.. .|||+|+|.+|.+|+.+++...||+.|
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 48999999999999987 799999999999999655566799965
No 28
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.11 E-value=1.6e-08 Score=102.41 Aligned_cols=252 Identities=15% Similarity=0.132 Sum_probs=189.0
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHH
Q 015513 94 QVRKLVRDLDSGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKA 173 (405)
Q Consensus 94 ~i~~lv~~l~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~ 173 (405)
.+..+++.+.....+.+++..++......+ ..+....+.+...|.+.+ .+..+.+..+|..+.... ....
T Consensus 4 ~~~~~l~~l~~~~~~~~~L~~l~~~~~~~~-----~l~~~~~~~lf~~L~~~~----~e~v~~~~~iL~~~l~~~-~~~~ 73 (503)
T PF10508_consen 4 WINELLEELSSKAERLEALPELKTELSSSP-----FLERLPEPVLFDCLNTSN----REQVELICDILKRLLSAL-SPDS 73 (503)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhhh-----HHHhchHHHHHHHHhhcC----hHHHHHHHHHHHHHHhcc-CHHH
Confidence 456677777777778888888876443222 112222233777776442 223556666666654322 2222
Q ss_pred hhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 015513 174 LVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVL 253 (405)
Q Consensus 174 ~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL 253 (405)
. . .+ ..+.|...|.+ .++.+|..++..|.++..+.+....+. .+.+.++.++..|.++ +..+.+.|..+|
T Consensus 74 l-~-~~--~~~~L~~gL~h----~~~~Vr~l~l~~l~~~~~~~~~~~~~~-~~~~l~~~i~~~L~~~-d~~Va~~A~~~L 143 (503)
T PF10508_consen 74 L-L-PQ--YQPFLQRGLTH----PSPKVRRLALKQLGRIARHSEGAAQLL-VDNELLPLIIQCLRDP-DLSVAKAAIKAL 143 (503)
T ss_pred H-H-HH--HHHHHHHHhcC----CCHHHHHHHHHHHHHHhcCCHHHHHHh-cCccHHHHHHHHHcCC-cHHHHHHHHHHH
Confidence 2 1 22 67888899998 899999999999999988776655555 6789999999999998 899999999999
Q ss_pred HHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHH
Q 015513 254 LQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRA 333 (405)
Q Consensus 254 ~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a 333 (405)
.+|+.++.+...+.+.+.++.|..++... +..++-++..++.+++...+.-...+...|.++.+++.+.......+-.+
T Consensus 144 ~~l~~~~~~~~~l~~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlna 222 (503)
T PF10508_consen 144 KKLASHPEGLEQLFDSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNA 222 (503)
T ss_pred HHHhCCchhHHHHhCcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHH
Confidence 99999988888888999999999999874 56778899999999997655555555667899999996654334678899
Q ss_pred HHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhcc
Q 015513 334 VHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQAD 369 (405)
Q Consensus 334 ~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~ 369 (405)
+.+|..|+.. +...+.+.+.|++++|..++...
T Consensus 223 lell~~La~~---~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 223 LELLSELAET---PHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred HHHHHHHHcC---hhHHHHHHhCCHHHHHHHHHhcc
Confidence 9999999973 34689999999999999999753
No 29
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.10 E-value=3e-08 Score=93.75 Aligned_cols=259 Identities=12% Similarity=0.074 Sum_probs=189.1
Q ss_pred HHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCc----hhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhh
Q 015513 118 LAMENERNRKSLEEAFVVRALVLFIITSYKGNKT----TGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWE 193 (405)
Q Consensus 118 l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~----~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~ 193 (405)
-..+++..+-.+++.|.++.++.++..--...+. .....+......|..+++..+.+- ..| ..+..++..++|
T Consensus 250 ~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~-~~p-~~l~~~~sw~~S- 326 (604)
T KOG4500|consen 250 KAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLH-ADP-QFLDFLESWFRS- 326 (604)
T ss_pred HHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHh-cCc-HHHHHHHHHhcC-
Confidence 3446788888999999999999999752112111 112233344444555554444443 334 478888888888
Q ss_pred cCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhc----CChHHHHHHHHHHHHhccCCchhHHHHhh
Q 015513 194 NNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKEN----ISQQATKSGLHVLLQACPMGGNRVKITEA 269 (405)
Q Consensus 194 ~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~----~~~~~~~~a~~aL~~L~~~~~n~~~~v~~ 269 (405)
.+...+..++.+|.|++..++.....+ +.|++..|+++|... .+.+.+.+++.||+||.-...|+..++.+
T Consensus 327 ---~d~~l~t~g~LaigNfaR~D~~ci~~v--~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~a 401 (604)
T KOG4500|consen 327 ---DDSNLITMGSLAIGNFARRDDICIQLV--QKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPA 401 (604)
T ss_pred ---CchhHHHHHHHHHHhhhccchHHHHHH--HHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhcccc
Confidence 899999999999999999999998887 789999999999641 37889999999999999999999999999
Q ss_pred cchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccCh--h---hhHHHHHHHHHhcccC
Q 015513 270 NAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSP--A---TNDRAVHILSSISKFS 344 (405)
Q Consensus 270 g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~--~---~~e~a~~~L~~L~~~~ 344 (405)
|++.+++..+... .+.++-.-+++|..+. +++..+..+-+--+.+++.|...+. + ......+.+..+-+++
T Consensus 402 GvteaIL~~lk~~-~ppv~fkllgTlrM~~---d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs 477 (604)
T KOG4500|consen 402 GVTEAILLQLKLA-SPPVTFKLLGTLRMIR---DSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHS 477 (604)
T ss_pred chHHHHHHHHHhc-CCcchHHHHHHHHHHH---hchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhh
Confidence 9999999999886 6677777777777764 4455444445555777776665532 1 2344556777777776
Q ss_pred CCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhccc
Q 015513 345 ATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVW 389 (405)
Q Consensus 345 ~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~ 389 (405)
....+...+.+.|+|+.++.++.+. .-..+..|.-.|-.+...|
T Consensus 478 ~~kdv~~tvpksg~ik~~Vsm~t~~-hi~mqnEalVal~~~~~~y 521 (604)
T KOG4500|consen 478 KYKDVILTVPKSGGIKEKVSMFTKN-HINMQNEALVALLSTESKY 521 (604)
T ss_pred HhhhhHhhccccccHHHHHHHHHHh-hHHHhHHHHHHHHHHHHHh
Confidence 5556888889999999999999753 4456666666666555544
No 30
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.07 E-value=4.5e-08 Score=92.55 Aligned_cols=290 Identities=10% Similarity=0.097 Sum_probs=195.9
Q ss_pred CchHHHHHHHHHhcch--hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCC---chhHHHHHHHHHhc
Q 015513 90 LNKDQVRKLVRDLDSG--HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNK---TTGLEEALRILSLV 164 (405)
Q Consensus 90 ~~~~~i~~lv~~l~~~--~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~---~~~~e~A~~~L~~L 164 (405)
++.+.+..|.+..+|+ +.-.+..+.|.++|-++.++|..+.+.||-..++.+|+.-..... .+....+.+.|.|-
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny 163 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY 163 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence 4444455555544543 677788899999999999999999999998888888865332211 12345566899998
Q ss_pred CCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhcc-chhhhcccHHHHHHHHHHHhhcCCh
Q 015513 165 WSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASK-GLLESTLNLDFFKEMVKLLKENISQ 243 (405)
Q Consensus 165 ~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~-~~~i~~~~~g~i~~Lv~lL~~~~~~ 243 (405)
..++++.+..+.+.| .++.|...+.-.. .+.+..+......++|.+.... -.... .+......|+++|.....+
T Consensus 164 ~l~~~~l~aq~~~~g--Vl~tL~~~~~I~~--qNaa~~e~ll~~f~nlls~~~e~~~~~~-~d~sl~~~l~~ll~~~v~~ 238 (604)
T KOG4500|consen 164 ILDSRELRAQVADAG--VLNTLAITYWIDW--QNAALTEKLLAPFFNLLSFVCEMLYPFC-KDCSLVFMLLQLLPSMVRE 238 (604)
T ss_pred hCCcHHHHHHHHhcc--cHHHHHHHhhccc--ccHHHHHHHHhccccHHHHHHHhhhhhh-ccchHHHHHHHHHHHhhcc
Confidence 888889999999998 9999988776422 4666667777777776654322 22222 3556778899999887678
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHH-------hcCHhhHHHHHhcccchH
Q 015513 244 QATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQL-------CSCADGRLKFREHAGAIA 316 (405)
Q Consensus 244 ~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L-------~~~~~~~~~i~~~~g~i~ 316 (405)
+..+..+..|...+.++.-+-.+++.|.+..++++++.-++-.-++.+...+-.. ...++.-.++......+.
T Consensus 239 d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~ 318 (604)
T KOG4500|consen 239 DIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLD 318 (604)
T ss_pred chhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHH
Confidence 8899999999999999999999999999999999998632333345555444333 334445455433221233
Q ss_pred HHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhc----cCcHHHHHHHHHHHHHhhc
Q 015513 317 MVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQA----DCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 317 ~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~----~~~~~~k~~A~~ll~~l~~ 387 (405)
.++.-+.+......-.++-++.++++ .+.....+++.|.+.+|+.++-. ++.-+.+..+...||.+.=
T Consensus 319 ~~~sw~~S~d~~l~t~g~LaigNfaR---~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 319 FLESWFRSDDSNLITMGSLAIGNFAR---RDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhhhc---cchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 33332211122334444455555554 34578999999999999999954 2233455566678886643
No 31
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.05 E-value=9.7e-11 Score=74.91 Aligned_cols=38 Identities=45% Similarity=0.908 Sum_probs=32.5
Q ss_pred CcCCcccCCCc-cccCCCCcccHHHHHHHHhcCCCCCCCCC
Q 015513 12 CPISLQIMKDP-VTAITGISYDRESIEKWLKTAKDTTCPVT 51 (405)
Q Consensus 12 Cpi~~~~m~dP-v~~~~g~~~~r~~I~~~~~~~~~~~cP~~ 51 (405)
||||.+.++|| ++++|||+||+.||++|++. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 89999999999 57799999999999999976 3689986
No 32
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.04 E-value=8.5e-11 Score=75.92 Aligned_cols=37 Identities=24% Similarity=0.604 Sum_probs=23.7
Q ss_pred CcCCcccCCC----ccccCCCCcccHHHHHHHHhcC--CCCCCC
Q 015513 12 CPISLQIMKD----PVTAITGISYDRESIEKWLKTA--KDTTCP 49 (405)
Q Consensus 12 Cpi~~~~m~d----Pv~~~~g~~~~r~~I~~~~~~~--~~~~cP 49 (405)
||||.+ |.+ |++++|||+||+.||++++..+ +...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999854 245677
No 33
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.03 E-value=6.1e-08 Score=92.41 Aligned_cols=260 Identities=11% Similarity=0.086 Sum_probs=166.8
Q ss_pred HHHHHHHHhhHHhHHHHHHh---chHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccc----hhHHHH
Q 015513 113 KKMEALAMENERNRKSLEEA---FVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHN----QDLIGA 185 (405)
Q Consensus 113 ~~L~~l~~~~~~~r~~i~~~---g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g----~~~i~~ 185 (405)
..++.+-+.....|..+++. +.+..++.+|... ..+.+.....+..+..+..+++...+.+.+.. +.....
T Consensus 32 ~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~ 109 (312)
T PF03224_consen 32 SLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSP 109 (312)
T ss_dssp HHHHHHHHHHH-------------------HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHH
T ss_pred HHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHH
Confidence 33444444444555556653 4477888888765 12234577888888888776665555554411 014677
Q ss_pred HHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHhccCCch
Q 015513 186 LMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENI---SQQATKSGLHVLLQACPMGGN 262 (405)
Q Consensus 186 Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~---~~~~~~~a~~aL~~L~~~~~n 262 (405)
+++++.+ ++..++..|+..|..|........... ..+.++.++++|++.. +.+....++.+|.+|...++.
T Consensus 110 fl~ll~~----~D~~i~~~a~~iLt~Ll~~~~~~~~~~--~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~ 183 (312)
T PF03224_consen 110 FLKLLDR----NDSFIQLKAAFILTSLLSQGPKRSEKL--VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY 183 (312)
T ss_dssp HHHH-S-----SSHHHHHHHHHHHHHHHTSTTT--HHH--HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH
T ss_pred HHHHhcC----CCHHHHHHHHHHHHHHHHcCCccccch--HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh
Confidence 8888887 899999999999999987765544432 2478888999887631 345668999999999999999
Q ss_pred hHHHHhhcchHHHHHHhh-----c-CCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHcc-ChhhhHHHHH
Q 015513 263 RVKITEANAVFELIELEL-----T-KPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRV-SPATNDRAVH 335 (405)
Q Consensus 263 ~~~~v~~g~v~~Lv~lL~-----~-~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~-s~~~~e~a~~ 335 (405)
|..+.+.|.++.|..+|. + .....++-.++-++|.|+-.++....+.. .+.|+.|++.+... .+.....+++
T Consensus 184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~L~~i~~~~~KEKvvRv~la 262 (312)
T PF03224_consen 184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK-KYLIPLLADILKDSIKEKVVRVSLA 262 (312)
T ss_dssp HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHH--SHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc-cchHHHHHHHHHhcccchHHHHHHH
Confidence 999999999999999992 2 22345778999999999988888888766 45899999944332 3466788999
Q ss_pred HHHHhcccCCCHHHHHHHHhcChHHHHHHHHhc-cCcHHHHHHHHHHH
Q 015513 336 ILSSISKFSATYEVVLEMLSVGAVSKLCMVTQA-DCEKYLKDRAKEIL 382 (405)
Q Consensus 336 ~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~-~~~~~~k~~A~~ll 382 (405)
++.++.....+. +...|+..|+++.+-.+... -.+++..+.-..+-
T Consensus 263 ~l~Nl~~~~~~~-~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 263 ILRNLLSKAPKS-NIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp HHHHTTSSSSTT-HHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred HHHHHHhccHHH-HHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999876643 88999998876666555533 24677776655443
No 34
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.5e-08 Score=96.93 Aligned_cols=194 Identities=14% Similarity=0.147 Sum_probs=150.3
Q ss_pred HHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHH
Q 015513 154 LEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEM 233 (405)
Q Consensus 154 ~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~L 233 (405)
...|+.+|.||+.+.. ....+.... .+..||+.|.. .+.+........|..|+-.++++..+. ..|.++.|
T Consensus 280 Lrva~ylLlNlAed~~-~ElKMrrkn--iV~mLVKaLdr----~n~~Ll~lv~~FLkKLSIf~eNK~~M~--~~~iveKL 350 (791)
T KOG1222|consen 280 LRVAVYLLLNLAEDIS-VELKMRRKN--IVAMLVKALDR----SNSSLLTLVIKFLKKLSIFDENKIVME--QNGIVEKL 350 (791)
T ss_pred HHHHHHHHHHHhhhhh-HHHHHHHHh--HHHHHHHHHcc----cchHHHHHHHHHHHHhhhhccchHHHH--hccHHHHH
Confidence 4567789999986643 223333334 88899999998 788888899999999999999999887 78999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhccc
Q 015513 234 VKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAG 313 (405)
Q Consensus 234 v~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g 313 (405)
++++... +++.++..+..|+||+....+|.+||..|.+|.|+.+|.+. .-..-|+.+|+.++.....+..+.- ..
T Consensus 351 ~klfp~~-h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d---~~~~iA~~~lYh~S~dD~~K~Mfay-Td 425 (791)
T KOG1222|consen 351 LKLFPIQ-HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD---TKHGIALNMLYHLSCDDDAKAMFAY-TD 425 (791)
T ss_pred HHhcCCC-CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc---ccchhhhhhhhhhccCcHHHHHHHH-HH
Confidence 9999887 89999999999999999999999999999999999999764 3346689999999887777877755 45
Q ss_pred chHHHHHHHHccChhh-hHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHH
Q 015513 314 AIAMVTKRLLRVSPAT-NDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCM 364 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~~~-~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ 364 (405)
+|+.+.+.++..+... .-.-++...+||-... +.+.+.+-.++..|+.
T Consensus 426 ci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR---NaQlvceGqgL~~LM~ 474 (791)
T KOG1222|consen 426 CIKLLMKDVLSGTGSEVDLALIALCINLCLNKR---NAQLVCEGQGLDLLME 474 (791)
T ss_pred HHHHHHHHHHhcCCceecHHHHHHHHHHHhccc---cceEEecCcchHHHHH
Confidence 9999999888765433 3333455566775433 3455555335554443
No 35
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.97 E-value=3.8e-10 Score=73.13 Aligned_cols=40 Identities=38% Similarity=0.854 Sum_probs=36.3
Q ss_pred CcCCcccCCCcc-ccCCCCcccHHHHHHHHhcCCCCCCCCC
Q 015513 12 CPISLQIMKDPV-TAITGISYDRESIEKWLKTAKDTTCPVT 51 (405)
Q Consensus 12 Cpi~~~~m~dPv-~~~~g~~~~r~~I~~~~~~~~~~~cP~~ 51 (405)
||||.+.+.+|+ +++|||+||+.||.+|++..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 8899999999999999985446779986
No 36
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=3.7e-07 Score=92.17 Aligned_cols=290 Identities=17% Similarity=0.162 Sum_probs=201.8
Q ss_pred CCCCCCchHHHHHHHHHhcc---hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHH
Q 015513 85 TPKSALNKDQVRKLVRDLDS---GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRIL 161 (405)
Q Consensus 85 ~~~~~~~~~~i~~lv~~l~~---~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L 161 (405)
.|+.+-..+.|+.|+.++.+ .+.|..|+..|+.+++ ++|..+. +.|+++|+..|.....+ ++....++..+
T Consensus 14 ~~k~~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D--~E~ik~~LdTl 87 (970)
T KOG0946|consen 14 PPKQQSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMD--PEIIKYALDTL 87 (970)
T ss_pred CCccccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCC--HHHHHHHHHHH
Confidence 34444557789999988844 2999999999999986 5665554 56788999999876544 45678899999
Q ss_pred HhcCCCch------hh----------HHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhc--cchhhh
Q 015513 162 SLVWSPSN------EN----------KALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELAS--KGLLES 223 (405)
Q Consensus 162 ~~L~~~~~------~~----------~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~--~~~~i~ 223 (405)
+++..+++ +. .+.+.... +-|..|+..+.. .+..+|-.|+.+|.+|.+... -+..+.
T Consensus 88 ~il~~~dd~~~v~dds~qsdd~g~~iae~fik~q-d~I~lll~~~e~----~DF~VR~~aIqLlsalls~r~~e~q~~ll 162 (970)
T KOG0946|consen 88 LILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQ-DNITLLLQSLEE----FDFHVRLYAIQLLSALLSCRPTELQDALL 162 (970)
T ss_pred HHHHhcCcchhhcccchhhhHHHHHHHHHHHcCc-hhHHHHHHHHHh----hchhhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 98876653 11 23333333 378888888887 899999999999999976543 233344
Q ss_pred cccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHh-hcchHHHHHHhhcCC--C-CCcHHHHHHHHHHHh
Q 015513 224 TLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITE-ANAVFELIELELTKP--E-KSTTELIFNLLAQLC 299 (405)
Q Consensus 224 ~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~-~g~v~~Lv~lL~~~~--~-~~~~e~a~~~L~~L~ 299 (405)
..+-+|..|+++|.+. -...|..++-.|..|+....+..++|. .+++..|..++...+ + .-+.+.++..|-||-
T Consensus 163 -~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLL 240 (970)
T KOG0946|consen 163 -VSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLL 240 (970)
T ss_pred -HCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 5678899999999987 567888999999999997776666665 689999999998642 3 358999999999999
Q ss_pred cCHhhHHHHHhcccchHHHHHHHHcc---Ch-----hhh------HHHHHHHHHhcc---cCC-CHHHHHHHHhcChHHH
Q 015513 300 SCADGRLKFREHAGAIAMVTKRLLRV---SP-----ATN------DRAVHILSSISK---FSA-TYEVVLEMLSVGAVSK 361 (405)
Q Consensus 300 ~~~~~~~~i~~~~g~i~~Lv~~l~~~---s~-----~~~------e~a~~~L~~L~~---~~~-~~~~~~~~~~~G~v~~ 361 (405)
..+...+.+..+.+-||.|.+ |+.. .+ ..+ -.+..++..+.. .++ ...+...|...+++..
T Consensus 241 K~N~SNQ~~FrE~~~i~rL~k-lL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~ 319 (970)
T KOG0946|consen 241 KNNISNQNFFREGSYIPRLLK-LLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDV 319 (970)
T ss_pred hhCcchhhHHhccccHHHHHh-hcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHH
Confidence 876655555566889999998 4443 11 011 123334444432 111 1245567889999999
Q ss_pred HHHHHhccC-cHHHHHHHHH-HHHHhhcc
Q 015513 362 LCMVTQADC-EKYLKDRAKE-ILRLHSNV 388 (405)
Q Consensus 362 Ll~ll~~~~-~~~~k~~A~~-ll~~l~~~ 388 (405)
|+.++-+.+ +..++-.++- +-.+.+.+
T Consensus 320 Lc~il~~~~vp~dIltesiitvAevVRgn 348 (970)
T KOG0946|consen 320 LCTILMHPGVPADILTESIITVAEVVRGN 348 (970)
T ss_pred HHHHHcCCCCcHhHHHHHHHHHHHHHHhc
Confidence 999987653 3334433333 33344443
No 37
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.87 E-value=7.8e-10 Score=100.46 Aligned_cols=67 Identities=18% Similarity=0.347 Sum_probs=60.4
Q ss_pred CcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHh
Q 015513 8 QYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTH 77 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~ 77 (405)
+-+.|-||++.|+-|+++|||||||.-||.+++.. +..||.|..+++. ..++.|..|.++|+.+..-
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~--~p~CP~C~~~~~E-s~Lr~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY--KPQCPTCCVTVTE-SDLRNNRILDEIVKSLNFA 88 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc--CCCCCceecccch-hhhhhhhHHHHHHHHHHHH
Confidence 34799999999999999999999999999999964 6889999999987 8999999999999988553
No 38
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.85 E-value=8.3e-10 Score=76.10 Aligned_cols=59 Identities=24% Similarity=0.447 Sum_probs=33.1
Q ss_pred CcccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 015513 8 QYFICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLI 71 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I 71 (405)
+-+.|++|.++|++||++ .|.|.||+.||.+.+. ..||+|..+-.. .++..|..|.++|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~----~~CPvC~~Paw~-qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG----SECPVCHTPAWI-QDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT----TB-SSS--B-S--SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC----CCCCCcCChHHH-HHHHhhhhhhccC
Confidence 457999999999999965 8999999999987653 349999998876 8899999888775
No 39
>PRK09687 putative lyase; Provisional
Probab=98.84 E-value=5.3e-07 Score=84.24 Aligned_cols=211 Identities=10% Similarity=0.031 Sum_probs=134.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHH
Q 015513 105 GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIG 184 (405)
Q Consensus 105 ~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~ 184 (405)
+..|..|++.|..+-..... ..-+++.|..++.. +.+..++..|+.+|..+....... ... +++
T Consensus 68 ~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~---D~d~~VR~~A~~aLG~~~~~~~~~-----~~~--a~~ 131 (280)
T PRK09687 68 PIERDIGADILSQLGMAKRC------QDNVFNILNNLALE---DKSACVRASAINATGHRCKKNPLY-----SPK--IVE 131 (280)
T ss_pred HHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhc---CCCHHHHHHHHHHHhccccccccc-----chH--HHH
Confidence 35666666666554321100 12345566655332 222345777888887775332110 111 455
Q ss_pred HHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhH
Q 015513 185 ALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRV 264 (405)
Q Consensus 185 ~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~ 264 (405)
.+...+.. .+..+|..|+.+|..+ . ...+++.|+.+|++. ++.++..|+.+|..+....
T Consensus 132 ~l~~~~~D----~~~~VR~~a~~aLg~~----------~--~~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~~~~---- 190 (280)
T PRK09687 132 QSQITAFD----KSTNVRFAVAFALSVI----------N--DEAAIPLLINLLKDP-NGDVRNWAAFALNSNKYDN---- 190 (280)
T ss_pred HHHHHhhC----CCHHHHHHHHHHHhcc----------C--CHHHHHHHHHHhcCC-CHHHHHHHHHHHhcCCCCC----
Confidence 56666665 6777888888887543 1 346788999999887 7889999999998883321
Q ss_pred HHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccC
Q 015513 265 KITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFS 344 (405)
Q Consensus 265 ~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~ 344 (405)
..+++.|+.+|.+. +..++..|+.+|..+- +..+||.|++.+-. .. ....++.+|..+..
T Consensus 191 ----~~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~-----------~~~av~~Li~~L~~-~~-~~~~a~~ALg~ig~-- 250 (280)
T PRK09687 191 ----PDIREAFVAMLQDK-NEEIRIEAIIGLALRK-----------DKRVLSVLIKELKK-GT-VGDLIIEAAGELGD-- 250 (280)
T ss_pred ----HHHHHHHHHHhcCC-ChHHHHHHHHHHHccC-----------ChhHHHHHHHHHcC-Cc-hHHHHHHHHHhcCC--
Confidence 25678889999775 7888999999987752 23478888885433 22 33344454444431
Q ss_pred CCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHH
Q 015513 345 ATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILR 383 (405)
Q Consensus 345 ~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~ 383 (405)
.-+++.|..+++.+.++.++.+|.+.|+
T Consensus 251 -----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 -----------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred -----------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 1378999999986779999999998876
No 40
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.81 E-value=2.7e-09 Score=72.28 Aligned_cols=47 Identities=30% Similarity=0.534 Sum_probs=40.5
Q ss_pred CcccCcCCcccCCCccccCCCCc-ccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKDPVTAITGIS-YDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~~~g~~-~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
+++.|+||++.++++++.+|||. ||..|+.+|+.. ...||+|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR--KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT--TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc--CCCCCcCChhhc
Confidence 46789999999999999999999 999999999974 578999998864
No 41
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=8.9e-07 Score=85.04 Aligned_cols=257 Identities=14% Similarity=0.169 Sum_probs=182.2
Q ss_pred hHHHHHHHHHhcch-----hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCC
Q 015513 92 KDQVRKLVRDLDSG-----HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWS 166 (405)
Q Consensus 92 ~~~i~~lv~~l~~~-----~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~ 166 (405)
++++..+-+++... ..-..|+.-|-+++. +-..-..++.-..|..||+.|...+ ....-..+..|..|+.
T Consensus 259 k~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n----~~Ll~lv~~FLkKLSI 333 (791)
T KOG1222|consen 259 KEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSN----SSLLTLVIKFLKKLSI 333 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccc----hHHHHHHHHHHHHhhh
Confidence 44566666666432 233345666677775 3333455667788999999997543 2346677788888988
Q ss_pred CchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHH
Q 015513 167 PSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQAT 246 (405)
Q Consensus 167 ~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~ 246 (405)
.. ++|..+.+.| .++.|+++... ..++.+.....+|+||+-+...+..++ ..|.+|.|+.+|.+. .-.
T Consensus 334 f~-eNK~~M~~~~--iveKL~klfp~----~h~dL~~~tl~LlfNlSFD~glr~KMv--~~GllP~l~~ll~~d---~~~ 401 (791)
T KOG1222|consen 334 FD-ENKIVMEQNG--IVEKLLKLFPI----QHPDLRKATLMLLFNLSFDSGLRPKMV--NGGLLPHLASLLDSD---TKH 401 (791)
T ss_pred hc-cchHHHHhcc--HHHHHHHhcCC----CCHHHHHHHHHHhhhccccccccHHHh--hccchHHHHHHhCCc---ccc
Confidence 76 6888898888 99999999998 899999999999999998888888776 679999999999865 345
Q ss_pred HHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccC
Q 015513 247 KSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVS 326 (405)
Q Consensus 247 ~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s 326 (405)
..|+..|+.++.+++.+..+....+|+.|.+.+.++.+.++.-..++.--|||....+-+-+++ +.|+..|++.-+...
T Consensus 402 ~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvce-GqgL~~LM~ra~k~~ 480 (791)
T KOG1222|consen 402 GIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCE-GQGLDLLMERAIKSR 480 (791)
T ss_pred hhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEec-CcchHHHHHHHhccc
Confidence 6789999999999999999999999999999998875666555555555688876655555544 667888877433221
Q ss_pred hhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHH
Q 015513 327 PATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKY 373 (405)
Q Consensus 327 ~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~ 373 (405)
+ -.-..++.+++.+.+. .+...++ -|..|...+..+.++.
T Consensus 481 D---~lLmK~vRniSqHeg~--tqn~Fid--yvgdLa~i~~nd~~E~ 520 (791)
T KOG1222|consen 481 D---LLLMKVVRNISQHEGA--TQNMFID--YVGDLAGIAKNDNSES 520 (791)
T ss_pred c---hHHHHHHHHhhhccch--HHHHHHH--HHHHHHHHhhcCchHH
Confidence 1 2234667777776542 2333333 4555555555444444
No 42
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.3e-06 Score=89.03 Aligned_cols=256 Identities=18% Similarity=0.177 Sum_probs=187.8
Q ss_pred hHHHHHHHHHhc---chhHHHHHHHHHH-HHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCC
Q 015513 92 KDQVRKLVRDLD---SGHLRISTLKKME-ALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSP 167 (405)
Q Consensus 92 ~~~i~~lv~~l~---~~~~~~~Al~~L~-~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~ 167 (405)
...+..|+..+. ++..|.+|+.+|. ++...+++.-.-|--.-.||.|+.+|+..+ ..+.+..|..+|.+|+..
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~---n~DIMl~AcRaltyl~ev 242 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEH---NFDIMLLACRALTYLCEV 242 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHhh
Confidence 457788888883 4588899999995 566666665555555678999999998643 235588999999999877
Q ss_pred chhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHH
Q 015513 168 SNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATK 247 (405)
Q Consensus 168 ~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~ 247 (405)
-+....++++.+ +||.|+.-|..- .-.++.+++..+|..|+.... ..+. ..|++...+.+|.=- +..+++
T Consensus 243 lP~S~a~vV~~~--aIPvl~~kL~~I---eyiDvAEQ~LqALE~iSR~H~--~AiL--~AG~l~a~LsylDFF-Si~aQR 312 (1051)
T KOG0168|consen 243 LPRSSAIVVDEH--AIPVLLEKLLTI---EYIDVAEQSLQALEKISRRHP--KAIL--QAGALSAVLSYLDFF-SIHAQR 312 (1051)
T ss_pred ccchhheeeccc--chHHHHHhhhhh---hhhHHHHHHHHHHHHHHhhcc--HHHH--hcccHHHHHHHHHHH-HHHHHH
Confidence 777788899988 999999655431 567888999999999987654 2333 579999888888654 667999
Q ss_pred HHHHHHHHhccC--CchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcC----HhhHHHHHhcccchHHHHHH
Q 015513 248 SGLHVLLQACPM--GGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSC----ADGRLKFREHAGAIAMVTKR 321 (405)
Q Consensus 248 ~a~~aL~~L~~~--~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~----~~~~~~i~~~~g~i~~Lv~~ 321 (405)
.|+.+..|.|.. .+.-..++ .++|.|-.+|... ++...|.++-.+..++.. ++--.++. ..|-|...++
T Consensus 313 ~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~-D~k~ies~~ic~~ri~d~f~h~~~kLdql~-s~dLi~~~~q- 387 (1051)
T KOG0168|consen 313 VALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQ-DKKPIESVCICLTRIADGFQHGPDKLDQLC-SHDLITNIQQ- 387 (1051)
T ss_pred HHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhcccChHHHHHHh-chhHHHHHHH-
Confidence 999999999984 34444444 4799999999886 788889999999888752 22233443 3567777777
Q ss_pred HHccCh-----hhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHh
Q 015513 322 LLRVSP-----ATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQ 367 (405)
Q Consensus 322 l~~~s~-----~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~ 367 (405)
|+..++ ...-.-++.|..+|..++. ..+...+.++..-|..+|+
T Consensus 388 Llsvt~t~Ls~~~~~~vIrmls~msS~~pl--~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 388 LLSVTPTILSNGTYTGVIRMLSLMSSGSPL--LFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred HHhcCcccccccchhHHHHHHHHHccCChH--HHHHHHHhhHHHHHHHHHh
Confidence 444432 2334455667777766553 6777888888888888886
No 43
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.79 E-value=1.2e-07 Score=90.42 Aligned_cols=219 Identities=11% Similarity=0.018 Sum_probs=151.5
Q ss_pred HHHHHHHHh-cchhHHHHHHHHHHHHHHhhHHhHHHHHHh------chHHHHHHHHHhhccCCCchhHHHHHHHHHhcCC
Q 015513 94 QVRKLVRDL-DSGHLRISTLKKMEALAMENERNRKSLEEA------FVVRALVLFIITSYKGNKTTGLEEALRILSLVWS 166 (405)
Q Consensus 94 ~i~~lv~~l-~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~------g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~ 166 (405)
.+..++..+ ++.+...+.+..+..+..+++...+.+.+. ....++++++.+. +...+..|+.+|..|..
T Consensus 59 ~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~----D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 59 LFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN----DSFIQLKAAFILTSLLS 134 (312)
T ss_dssp ---HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S----SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC----CHHHHHHHHHHHHHHHH
Confidence 455777777 667888889999998888887666666652 2466677766543 23447888888888865
Q ss_pred CchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHH------hhc
Q 015513 167 PSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLL------KEN 240 (405)
Q Consensus 167 ~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL------~~~ 240 (405)
..+....... .+ .++.++..|++..+..+.+.+..|+.+|.+|...+..+..+. +.|+++.|+++| .+.
T Consensus 135 ~~~~~~~~~~-~~--~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~--~~~~v~~l~~iL~~~~~~~~~ 209 (312)
T PF03224_consen 135 QGPKRSEKLV-KE--ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW--KSNGVSPLFDILRKQATNSNS 209 (312)
T ss_dssp STTT--HHHH-HH--HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH--THHHHHHHHHHHH--------
T ss_pred cCCccccchH-HH--HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH--hcCcHHHHHHHHHhhcccCCC
Confidence 5433222222 23 788888888753211455667999999999999999988887 689999999999 333
Q ss_pred CChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHh--hHHHHHhcccchHHH
Q 015513 241 ISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCAD--GRLKFREHAGAIAMV 318 (405)
Q Consensus 241 ~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~--~~~~i~~~~g~i~~L 318 (405)
.+....=.++-++|-|+.+++....+.+.+.||.|+++++....+.+..-++++|.||..... ....++. ++++++
T Consensus 210 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~--~~~l~~ 287 (312)
T PF03224_consen 210 SGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL--CGLLKT 287 (312)
T ss_dssp -HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH--H-HHHH
T ss_pred CchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH--ccHHHH
Confidence 466778899999999999999999999999999999999986566788999999999998766 5555554 356666
Q ss_pred HHHHH
Q 015513 319 TKRLL 323 (405)
Q Consensus 319 v~~l~ 323 (405)
++.|.
T Consensus 288 l~~L~ 292 (312)
T PF03224_consen 288 LQNLS 292 (312)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66444
No 44
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.77 E-value=5.7e-09 Score=93.42 Aligned_cols=49 Identities=24% Similarity=0.464 Sum_probs=41.1
Q ss_pred CCCcccCcCCcccCCCc--------cccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 6 VPQYFICPISLQIMKDP--------VTAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~dP--------v~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
..++..||||++.+.++ ++.+|||+||+.||.+|... ..+||.||.++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~--~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE--KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc--CCCCCCCCCEee
Confidence 34568999999988774 56689999999999999875 579999998874
No 45
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=6.6e-09 Score=91.19 Aligned_cols=76 Identities=37% Similarity=0.607 Sum_probs=69.4
Q ss_pred CCCCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC
Q 015513 3 EIEVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTHNGI 80 (405)
Q Consensus 3 ~~~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~~~~ 80 (405)
..++|+.++|.|+.++|+|||+.|+|-||+|.-|++.+.+-| ...|+|+.+++. .+++||..|+..|..|..+|+-
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvg-hfdpvtr~~Lte-~q~ipN~alkevIa~fl~~n~w 280 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVG-HFDPVTRWPLTE-YQLIPNLALKEVIAAFLKENEW 280 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhc-cCCchhcccCCH-HhhccchHHHHHHHHHHHhccc
Confidence 457899999999999999999999999999999999998753 468999999987 8999999999999999998853
No 46
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=7.9e-09 Score=90.07 Aligned_cols=58 Identities=28% Similarity=0.559 Sum_probs=49.8
Q ss_pred CcccCcCCcccCCCccccCCCCcccHHHHHHHHhcC-CCCCCCCCCCCCCCCCCCcccHH
Q 015513 8 QYFICPISLQIMKDPVTAITGISYDRESIEKWLKTA-KDTTCPVTKQPLPRDSGLTSNHT 66 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~-~~~~cP~~~~~~~~~~~~~~n~~ 66 (405)
..|-|-||++.-+|||+..|||-||=-||.+|+... ....||+|+...+. +.++|-+.
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~-~~vvPlYG 104 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI-DTVVPLYG 104 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCcccccccc-ceEEeeec
Confidence 469999999999999999999999999999999753 24569999999876 77877543
No 47
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.69 E-value=6.2e-09 Score=68.48 Aligned_cols=40 Identities=35% Similarity=0.767 Sum_probs=33.5
Q ss_pred cCcCCcccCC---CccccCCCCcccHHHHHHHHhcCCCCCCCCCC
Q 015513 11 ICPISLQIMK---DPVTAITGISYDRESIEKWLKTAKDTTCPVTK 52 (405)
Q Consensus 11 ~Cpi~~~~m~---dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~ 52 (405)
.||||++.|. .++.++|||.|++.||.+|++.+ .+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC--CcCCccC
Confidence 4999999994 46677999999999999999874 6999985
No 48
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.1e-08 Score=85.14 Aligned_cols=50 Identities=24% Similarity=0.580 Sum_probs=42.2
Q ss_pred cccCcCCcccCCC--ccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 015513 9 YFICPISLQIMKD--PVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGL 61 (405)
Q Consensus 9 ~~~Cpi~~~~m~d--Pv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~ 61 (405)
-|.||||++-++. ||...|||.||+.||++.++.. ..||+|+++++. .++
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~--~~CP~C~kkIt~-k~~ 182 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT--NKCPTCRKKITH-KQF 182 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHhC--CCCCCcccccch-hhh
Confidence 3899999999887 5567899999999999999763 689999998875 444
No 49
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.66 E-value=1.2e-08 Score=90.84 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=56.8
Q ss_pred CcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHh
Q 015513 8 QYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTH 77 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~ 77 (405)
.-+.|-||.+.++-|++.+||||||.-||.+++.+ +..||.|+.+... .-++-+..++..++.+..-
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~--qp~CP~Cr~~~~e-srlr~~s~~~ei~es~~~~ 90 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT--QPFCPVCREDPCE-SRLRGSSGSREINESHARN 90 (391)
T ss_pred hHHHhhhhhheeecceecccccchhHHHHHHHhcC--CCCCccccccHHh-hhcccchhHHHHHHhhhhc
Confidence 34699999999999999999999999999999965 5899999998875 6677777777777777553
No 50
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.3e-08 Score=95.59 Aligned_cols=68 Identities=22% Similarity=0.442 Sum_probs=58.7
Q ss_pred CCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 015513 6 VPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTHN 78 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~~ 78 (405)
..+++.||||.+.|++|++++|||+||+.||..+|. +...||.|+. . . ..+.+|..+..+++.+...+
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr~-~-~-~~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE--GPLSCPVCRP-P-S-RNLRPNVLLANLVERLRQLR 77 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC--CCcCCcccCC-c-h-hccCccHHHHHHHHHHHhcC
Confidence 467899999999999999999999999999999997 3678999996 3 3 36779999999988887654
No 51
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.2e-06 Score=80.20 Aligned_cols=184 Identities=17% Similarity=0.128 Sum_probs=147.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHH
Q 015513 105 GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIG 184 (405)
Q Consensus 105 ~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~ 184 (405)
.+.+..|+..|..++. +=+|-..+...|+..+++.+|.+.+ ..+++.|+++|...+.+++..+..+.+.| +++
T Consensus 97 le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~----~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~--~L~ 169 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSD----AELRELAARVIGTAVQNNPKSQEQVIELG--ALS 169 (342)
T ss_pred HHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCc----HHHHHHHHHHHHHHHhcCHHHHHHHHHcc--cHH
Confidence 3888899999999985 6677788999999999999887542 35699999999999999999999999998 999
Q ss_pred HHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhc-CChHHHHHHHHHHHHhccCCc-h
Q 015513 185 ALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKEN-ISQQATKSGLHVLLQACPMGG-N 262 (405)
Q Consensus 185 ~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~L~~~~~-n 262 (405)
.|+..|.+ +++...+.+|..++..|..+........ ...++...|.+.+.++ .+...+..++..+..|...+. .
T Consensus 170 ~Ll~~ls~---~~~~~~r~kaL~AissLIRn~~~g~~~f-l~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~ 245 (342)
T KOG2160|consen 170 KLLKILSS---DDPNTVRTKALFAISSLIRNNKPGQDEF-LKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD 245 (342)
T ss_pred HHHHHHcc---CCCchHHHHHHHHHHHHHhcCcHHHHHH-HhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh
Confidence 99999997 3777888999999999988766555544 4567799999999984 478889999999999887543 4
Q ss_pred hHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc
Q 015513 263 RVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS 300 (405)
Q Consensus 263 ~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~ 300 (405)
+..+-..|....+..+.... +..+.+.++.++..+..
T Consensus 246 ~d~~~~~~f~~~~~~l~~~l-~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 246 EDIASSLGFQRVLENLISSL-DFEVNEAALTALLSLLS 282 (342)
T ss_pred hhHHHHhhhhHHHHHHhhcc-chhhhHHHHHHHHHHHH
Confidence 44444456666666666664 77888888887776654
No 52
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.61 E-value=3.8e-08 Score=64.75 Aligned_cols=43 Identities=40% Similarity=0.920 Sum_probs=37.7
Q ss_pred cCcCCcccCCCccccC-CCCcccHHHHHHHHhcCCCCCCCCCCCC
Q 015513 11 ICPISLQIMKDPVTAI-TGISYDRESIEKWLKTAKDTTCPVTKQP 54 (405)
Q Consensus 11 ~Cpi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~~~~~cP~~~~~ 54 (405)
.||||.+.+.+|+.+. |||.|++.|+.+|+.. +...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 4999999999998775 9999999999999986 35789999865
No 53
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.8e-08 Score=89.30 Aligned_cols=50 Identities=16% Similarity=0.386 Sum_probs=44.6
Q ss_pred CCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 6 VPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.+..+.|.+|++.++||--+||||.||=+||.+|..+ ...||.||+++++
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e--k~eCPlCR~~~~p 285 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE--KAECPLCREKFQP 285 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc--ccCCCcccccCCC
Confidence 3456999999999999999999999999999999976 3569999999875
No 54
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.59 E-value=2.8e-05 Score=76.15 Aligned_cols=256 Identities=11% Similarity=0.060 Sum_probs=177.6
Q ss_pred hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhccc----chhHHHHHHHHHhhhcCCCcHHhHHHHHH
Q 015513 132 AFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHH----NQDLIGALMWVLQWENNDRHVAVKTSAMI 207 (405)
Q Consensus 132 ~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~----g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~ 207 (405)
...+..++.+|+... ..+.....+.++..+..+++..-..+.+. . +....++.+|.+ ++.-+...|+.
T Consensus 52 ~~y~~~~l~ll~~~~---~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~-~~~~~fl~lL~~----~d~~i~~~a~~ 123 (429)
T cd00256 52 GQYVKTFVNLLSQID---KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKK-KTWEPFFNLLNR----QDQFIVHMSFS 123 (429)
T ss_pred HHHHHHHHHHHhccC---cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccc-cchHHHHHHHcC----CchhHHHHHHH
Confidence 367788888886532 22346777777777766655433444332 2 256677888887 78889999999
Q ss_pred HHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCC-CCC
Q 015513 208 VLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKP-EKS 286 (405)
Q Consensus 208 ~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~-~~~ 286 (405)
+|..|.........-. ...-.+.-|...|+++.+...+..++.+|..|...++.|..+.+.++++.|+.+|+... +..
T Consensus 124 iLt~l~~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Q 202 (429)
T cd00256 124 ILAKLACFGLAKMEGS-DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQ 202 (429)
T ss_pred HHHHHHhcCccccchh-HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHH
Confidence 9999976443211110 00113334555666543567888999999999999999999999999999999998743 335
Q ss_pred cHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccC--hhhhHHHHHHHHHhcccCC----CHHHHHHHHhcChHH
Q 015513 287 TTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVS--PATNDRAVHILSSISKFSA----TYEVVLEMLSVGAVS 360 (405)
Q Consensus 287 ~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s--~~~~e~a~~~L~~L~~~~~----~~~~~~~~~~~G~v~ 360 (405)
+.-.++-+++.|+-.++..... ...+.|+.|++ +++.+ +.....++.+|.+|...+. .......|++.|..+
T Consensus 203 l~Y~~ll~lWlLSF~~~~~~~~-~~~~~i~~l~~-i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~ 280 (429)
T cd00256 203 LQYQSIFCIWLLTFNPHAAEVL-KRLSLIQDLSD-ILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK 280 (429)
T ss_pred HHHHHHHHHHHHhccHHHHHhh-ccccHHHHHHH-HHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH
Confidence 6788999999998777755544 44689999999 44544 4667788899999887542 223566788877655
Q ss_pred HHHHHHhcc--CcHHHHHHHHHHHHHhhcccCCCCCcchhh
Q 015513 361 KLCMVTQAD--CEKYLKDRAKEILRLHSNVWNNSPCIQVYL 399 (405)
Q Consensus 361 ~Ll~ll~~~--~~~~~k~~A~~ll~~l~~~~~~~~~~~~~~ 399 (405)
++..|+.. .++...+.-..+-..|.+....-..|+-|.
T Consensus 281 -~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~ 320 (429)
T cd00256 281 -TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYK 320 (429)
T ss_pred -HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 55555433 477888888888888888766666666665
No 55
>PRK09687 putative lyase; Provisional
Probab=98.58 E-value=4.5e-06 Score=78.00 Aligned_cols=196 Identities=12% Similarity=-0.010 Sum_probs=125.0
Q ss_pred hHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHH
Q 015513 134 VVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVL 213 (405)
Q Consensus 134 ~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~ 213 (405)
+++.+..++.+. +...+..|+++|..|-..... .. .+++.|..++.. +.+..++..|+.+|.++.
T Consensus 55 ~~~~l~~ll~~~----d~~vR~~A~~aLg~lg~~~~~------~~--~a~~~L~~l~~~---D~d~~VR~~A~~aLG~~~ 119 (280)
T PRK09687 55 VFRLAIELCSSK----NPIERDIGADILSQLGMAKRC------QD--NVFNILNNLALE---DKSACVRASAINATGHRC 119 (280)
T ss_pred HHHHHHHHHhCC----CHHHHHHHHHHHHhcCCCccc------hH--HHHHHHHHHHhc---CCCHHHHHHHHHHHhccc
Confidence 556666666543 234578888888887532210 11 267777776443 277888888888888875
Q ss_pred hhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHH
Q 015513 214 ELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFN 293 (405)
Q Consensus 214 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~ 293 (405)
.... . ....+++.|...+.+. ++.++..++.+|..+. +..+++.|+.+|.+. +..++..|+.
T Consensus 120 ~~~~----~--~~~~a~~~l~~~~~D~-~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d~-~~~VR~~A~~ 181 (280)
T PRK09687 120 KKNP----L--YSPKIVEQSQITAFDK-STNVRFAVAFALSVIN----------DEAAIPLLINLLKDP-NGDVRNWAAF 181 (280)
T ss_pred cccc----c--cchHHHHHHHHHhhCC-CHHHHHHHHHHHhccC----------CHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 4321 1 1246677777777777 7888888888885432 233788899999875 6788889999
Q ss_pred HHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHH
Q 015513 294 LLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKY 373 (405)
Q Consensus 294 ~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~ 373 (405)
+|..+.. .+...++.|++.+.......+..|+.+| .+... .-+++.|+..|+.+ .
T Consensus 182 aLg~~~~---------~~~~~~~~L~~~L~D~~~~VR~~A~~aL---g~~~~----------~~av~~Li~~L~~~-~-- 236 (280)
T PRK09687 182 ALNSNKY---------DNPDIREAFVAMLQDKNEEIRIEAIIGL---ALRKD----------KRVLSVLIKELKKG-T-- 236 (280)
T ss_pred HHhcCCC---------CCHHHHHHHHHHhcCCChHHHHHHHHHH---HccCC----------hhHHHHHHHHHcCC-c--
Confidence 9988722 1234667788855433344455554444 43222 24789999999853 2
Q ss_pred HHHHHHHHHHHhhc
Q 015513 374 LKDRAKEILRLHSN 387 (405)
Q Consensus 374 ~k~~A~~ll~~l~~ 387 (405)
.+..|+..|..+..
T Consensus 237 ~~~~a~~ALg~ig~ 250 (280)
T PRK09687 237 VGDLIIEAAGELGD 250 (280)
T ss_pred hHHHHHHHHHhcCC
Confidence 56677777766654
No 56
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.52 E-value=8.7e-08 Score=60.77 Aligned_cols=39 Identities=46% Similarity=0.962 Sum_probs=35.2
Q ss_pred CcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCC
Q 015513 12 CPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVT 51 (405)
Q Consensus 12 Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~ 51 (405)
||||++..++|++++|||.|+..|+.+|+.. +...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKS-GNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHh-CcCCCCCC
Confidence 8999999999999999999999999999973 35679986
No 57
>PHA02926 zinc finger-like protein; Provisional
Probab=98.49 E-value=9.2e-08 Score=82.80 Aligned_cols=52 Identities=15% Similarity=0.340 Sum_probs=41.2
Q ss_pred CCCCcccCcCCcccCCC---------ccccCCCCcccHHHHHHHHhcC----CCCCCCCCCCCCC
Q 015513 5 EVPQYFICPISLQIMKD---------PVTAITGISYDRESIEKWLKTA----KDTTCPVTKQPLP 56 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~d---------Pv~~~~g~~~~r~~I~~~~~~~----~~~~cP~~~~~~~ 56 (405)
...++..|+||++...+ +++.+|||+||..||.+|.... ....||.||..+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 35667899999988644 4677999999999999998642 1346999999874
No 58
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.47 E-value=6.2e-05 Score=73.71 Aligned_cols=280 Identities=10% Similarity=0.082 Sum_probs=170.8
Q ss_pred HHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhH
Q 015513 95 VRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENK 172 (405)
Q Consensus 95 i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~ 172 (405)
..+++..+.. .-.+..|...|..+...+..+.......-.+.-|...|++.+ ....+.-++..|..|...+ +.|
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~---~~~~~~~~v~~L~~LL~~~-~~R 178 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNIT---NNDYVQTAARCLQMLLRVD-EYR 178 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccC---CcchHHHHHHHHHHHhCCc-hHH
Confidence 3445555532 345666777776665443322111111112233444444332 1234777888888887665 688
Q ss_pred HhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHH
Q 015513 173 ALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHV 252 (405)
Q Consensus 173 ~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a 252 (405)
..+.+.+ +++.|+.+|+... .+.+.+.+++.+++-|+-.++..... ...+.|+.|+++++.....++.+.++.+
T Consensus 179 ~~f~~~~--~v~~L~~~L~~~~--~~~Ql~Y~~ll~lWlLSF~~~~~~~~--~~~~~i~~l~~i~k~s~KEKvvRv~l~~ 252 (429)
T cd00256 179 FAFVLAD--GVPTLVKLLSNAT--LGFQLQYQSIFCIWLLTFNPHAAEVL--KRLSLIQDLSDILKESTKEKVIRIVLAI 252 (429)
T ss_pred HHHHHcc--CHHHHHHHHhhcc--ccHHHHHHHHHHHHHHhccHHHHHhh--ccccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 8888777 8999999998622 36788999999999998776644443 3679999999999987677899999999
Q ss_pred HHHhccCC-------chhHHHHhhcchHHHHHHhhcC--CCCCcHHHHHHHHH-------HHhcCH--------------
Q 015513 253 LLQACPMG-------GNRVKITEANAVFELIELELTK--PEKSTTELIFNLLA-------QLCSCA-------------- 302 (405)
Q Consensus 253 L~~L~~~~-------~n~~~~v~~g~v~~Lv~lL~~~--~~~~~~e~a~~~L~-------~L~~~~-------------- 302 (405)
|+||.... .....|++.|+.+ ++..|... +|+++.+..-..-. .|++.+
T Consensus 253 l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WS 331 (429)
T cd00256 253 FRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWS 331 (429)
T ss_pred HHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCC
Confidence 99998743 2345667777655 55556543 24554443332222 222211
Q ss_pred ----------hhHHHHHhccc-chHHHHHHHHccCh--hhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhcc
Q 015513 303 ----------DGRLKFREHAG-AIAMVTKRLLRVSP--ATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQAD 369 (405)
Q Consensus 303 ----------~~~~~i~~~~g-~i~~Lv~~l~~~s~--~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~ 369 (405)
||-.++-+... .+..|++ ++..|. .....|..=+..+++..+. .+..+-+.|+=..++.+|. +
T Consensus 332 p~H~se~FW~EN~~kf~~~~~~llk~L~~-iL~~s~d~~~laVAc~Dige~vr~~P~--gr~i~~~lg~K~~vM~Lm~-h 407 (429)
T cd00256 332 PVHKSEKFWRENADRLNEKNYELLKILIH-LLETSVDPIILAVACHDIGEYVRHYPR--GKDVVEQLGGKQRVMRLLN-H 407 (429)
T ss_pred CCCCCchHHHHHHHHHHhcchHHHHHHHH-HHhcCCCcceeehhhhhHHHHHHHCcc--HHHHHHHcCcHHHHHHHhc-C
Confidence 23334433222 2345666 333332 2233333445556666554 4566667898888889998 5
Q ss_pred CcHHHHHHHHHHHHHh-hccc
Q 015513 370 CEKYLKDRAKEILRLH-SNVW 389 (405)
Q Consensus 370 ~~~~~k~~A~~ll~~l-~~~~ 389 (405)
.++++|..|-..++.+ ..+|
T Consensus 408 ~d~~Vr~eAL~avQklm~~~w 428 (429)
T cd00256 408 EDPNVRYEALLAVQKLMVHNW 428 (429)
T ss_pred CCHHHHHHHHHHHHHHHHhcC
Confidence 6889999988777644 4444
No 59
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=9.8e-06 Score=75.87 Aligned_cols=194 Identities=13% Similarity=0.081 Sum_probs=141.0
Q ss_pred CcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc-CCchhHHHHhhcchHHH
Q 015513 197 RHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP-MGGNRVKITEANAVFEL 275 (405)
Q Consensus 197 ~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~-~~~n~~~~v~~g~v~~L 275 (405)
.+.+.++.|..-|..+...-++...+. +.|++.+|+..+++. +...|+.|+++|...+. |+..+..+++.|+.+.|
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~--~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLI--SLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHh--hccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 678889999999999998888888776 789999999999988 89999999999999998 56788899999999999
Q ss_pred HHHhhcCCCCCcHHHHHHHHHHHhcCH-hhHHHHHhcccchHHHHHHHHcc--ChhhhHHHHHHHHHhcccCCCHHHHHH
Q 015513 276 IELELTKPEKSTTELIFNLLAQLCSCA-DGRLKFREHAGAIAMVTKRLLRV--SPATNDRAVHILSSISKFSATYEVVLE 352 (405)
Q Consensus 276 v~lL~~~~~~~~~e~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~~l~~~--s~~~~e~a~~~L~~L~~~~~~~~~~~~ 352 (405)
+..|.+..+..++..|+.+++.|-+.. .+..++.. .+|...|...+-.. +...+..++..+..|...... ....
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~-~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s--~~d~ 248 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK-LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS--DEDI 248 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh-cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh--hhhH
Confidence 999997655677889999999998754 47778766 56799999966552 345566677777666654332 2333
Q ss_pred HHhcChHHHHHHHHhccCcHHHHHHHHH-HHHHhhcccCCCCCcch
Q 015513 353 MLSVGAVSKLCMVTQADCEKYLKDRAKE-ILRLHSNVWNNSPCIQV 397 (405)
Q Consensus 353 ~~~~G~v~~Ll~ll~~~~~~~~k~~A~~-ll~~l~~~~~~~~~~~~ 397 (405)
+-..|. +..+..+.+.-....++.|.. ++..+........|+.+
T Consensus 249 ~~~~~f-~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~~~~ 293 (342)
T KOG2160|consen 249 ASSLGF-QRVLENLISSLDFEVNEAALTALLSLLSELSTRKELFVS 293 (342)
T ss_pred HHHhhh-hHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchhhhh
Confidence 444444 444444443445566666664 44444443333345554
No 60
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.6e-05 Score=81.17 Aligned_cols=203 Identities=14% Similarity=0.093 Sum_probs=138.7
Q ss_pred HHHHHHHHHh-cCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHH
Q 015513 154 LEEALRILSL-VWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKE 232 (405)
Q Consensus 154 ~e~A~~~L~~-L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~ 232 (405)
+-+|+.-|+. |...+++.-..+--. ..+|.|+.+|+. +.+.+++..|+++|.+|+..-..-..++ ++.++||.
T Consensus 185 Qleal~Elce~L~mgnEesLs~fpv~--slvp~Lv~LL~~---E~n~DIMl~AcRaltyl~evlP~S~a~v-V~~~aIPv 258 (1051)
T KOG0168|consen 185 QLEALTELCEMLSMGNEESLSGFPVK--SLVPVLVALLSH---EHNFDIMLLACRALTYLCEVLPRSSAIV-VDEHAIPV 258 (1051)
T ss_pred HHHHHHHHHHHHhhcchhhhccccHH--HHHHHHHHHHhc---cccHHHHHHHHHHHHHHHhhccchhhee-ecccchHH
Confidence 4444444433 344443333322222 289999999997 4789999999999999997655444555 67899999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc--CHhhHHHHHh
Q 015513 233 MVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS--CADGRLKFRE 310 (405)
Q Consensus 233 Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~--~~~~~~~i~~ 310 (405)
|+.-|..=...++.+.++.||..|+.. .-+.+.++|++...+..|.=- ...++..|+++-+|.|. .++...-+++
T Consensus 259 l~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v~e 335 (1051)
T KOG0168|consen 259 LLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHFVME 335 (1051)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchHHHH
Confidence 998666533678999999999999984 335678899999988877432 45789999999999996 3555565554
Q ss_pred cccchHHHHHHHHccChhhhHHHHHHHHHhc-ccCCCHHHHHHHHhcChHHHHHHHHhc
Q 015513 311 HAGAIAMVTKRLLRVSPATNDRAVHILSSIS-KFSATYEVVLEMLSVGAVSKLCMVTQA 368 (405)
Q Consensus 311 ~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~-~~~~~~~~~~~~~~~G~v~~Ll~ll~~ 368 (405)
.+|.|-.+|-.......|...-++..++ ......+..+++...|.+.....|+..
T Consensus 336 ---alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsv 391 (1051)
T KOG0168|consen 336 ---ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSV 391 (1051)
T ss_pred ---HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhc
Confidence 7898888544334455565555554443 344445566666666666666655543
No 61
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.37 E-value=2.9e-07 Score=60.35 Aligned_cols=41 Identities=20% Similarity=0.486 Sum_probs=34.6
Q ss_pred cCcCCcccC---CCccccCCCCcccHHHHHHHHhcCCCCCCCCCCC
Q 015513 11 ICPISLQIM---KDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQ 53 (405)
Q Consensus 11 ~Cpi~~~~m---~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~ 53 (405)
.||+|.+.+ +.|++++|||+||..||.++. +....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 389999999 347788999999999999998 23578999974
No 62
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.36 E-value=6.4e-07 Score=82.66 Aligned_cols=49 Identities=16% Similarity=0.369 Sum_probs=38.7
Q ss_pred CcccCcCCcc-cCCCcc----ccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 8 QYFICPISLQ-IMKDPV----TAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 8 ~~~~Cpi~~~-~m~dPv----~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
++..||+|+. ....|- +.+|||+||++||...|.. +...||.|+..+..
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~-~~~~CP~C~~~lrk 55 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC-CCCCCCCCCCccch
Confidence 4578999996 344553 3379999999999998865 36789999998865
No 63
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.33 E-value=7.1e-05 Score=81.40 Aligned_cols=229 Identities=15% Similarity=0.007 Sum_probs=115.4
Q ss_pred hHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCch
Q 015513 92 KDQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSN 169 (405)
Q Consensus 92 ~~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~ 169 (405)
...+..|++.|.+ +.+|..|+..|..+. ..++++.|+..|++. +..++..|+.+|..+....
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~----d~~VR~~Aa~aL~~l~~~~- 683 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDG----AAAVRRAAAEGLRELVEVL- 683 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCC----CHHHHHHHHHHHHHHHhcc-
Confidence 3445566666644 477777777776542 245678888888543 2345777777776653110
Q ss_pred hhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhc-----------cc-h-hhh--cccHHHHHHHH
Q 015513 170 ENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELAS-----------KG-L-LES--TLNLDFFKEMV 234 (405)
Q Consensus 170 ~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~-----------~~-~-~i~--~~~~g~i~~Lv 234 (405)
. ..+.|...|.+ .++.+|..|+..|..+...+. .. + ... +...+..+.|.
T Consensus 684 ---------~--~~~~L~~~L~~----~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~ 748 (897)
T PRK13800 684 ---------P--PAPALRDHLGS----PDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVA 748 (897)
T ss_pred ---------C--chHHHHHHhcC----CCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHH
Confidence 1 22344455555 566666666666655421000 00 0 000 00000112233
Q ss_pred HHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccc
Q 015513 235 KLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGA 314 (405)
Q Consensus 235 ~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~ 314 (405)
.++.+. ++.++..++.+|..+... +...++.|..++.+. +..++..|+.+|..+.... ..
T Consensus 749 ~~l~D~-~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~-d~~VR~aA~~aLg~~g~~~----------~~ 808 (897)
T PRK13800 749 GAATDE-NREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDP-DPLVRAAALAALAELGCPP----------DD 808 (897)
T ss_pred HHhcCC-CHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCC-CHHHHHHHHHHHHhcCCcc----------hh
Confidence 344444 445555555554444321 112356677777664 5667777777776663211 01
Q ss_pred hHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 015513 315 IAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLH 385 (405)
Q Consensus 315 i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l 385 (405)
++.++..+...+...+..|+.+|..+.. .-+++.|+.+|. +.+..+|..|+..|..+
T Consensus 809 ~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-------------~~a~~~L~~~L~-D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 809 VAAATAALRASAWQVRQGAARALAGAAA-------------DVAVPALVEALT-DPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccc-------------cchHHHHHHHhc-CCCHHHHHHHHHHHhcc
Confidence 2334443323233445555555544321 124577777776 56777787777777654
No 64
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.29 E-value=0.00025 Score=77.14 Aligned_cols=150 Identities=12% Similarity=-0.014 Sum_probs=103.7
Q ss_pred HHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhH
Q 015513 185 ALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRV 264 (405)
Q Consensus 185 ~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~ 264 (405)
.|...+.. .+.++|..++..|..+... ....++.|..+++++ ++.++..|+.+|..+....
T Consensus 746 ~l~~~l~D----~~~~VR~~aa~aL~~~~~~----------~~~~~~~L~~ll~D~-d~~VR~aA~~aLg~~g~~~---- 806 (897)
T PRK13800 746 SVAGAATD----ENREVRIAVAKGLATLGAG----------GAPAGDAVRALTGDP-DPLVRAAALAALAELGCPP---- 806 (897)
T ss_pred HHHHHhcC----CCHHHHHHHHHHHHHhccc----------cchhHHHHHHHhcCC-CHHHHHHHHHHHHhcCCcc----
Confidence 34455555 6677777777777666432 123478899999988 8999999999998885421
Q ss_pred HHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccC
Q 015513 265 KITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFS 344 (405)
Q Consensus 265 ~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~ 344 (405)
.+++.|+..|.+. +..++..|+.+|..+. ....++.|+.+|...+...+..|+.+|..+.
T Consensus 807 -----~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~-----------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~--- 866 (897)
T PRK13800 807 -----DDVAAATAALRAS-AWQVRQGAARALAGAA-----------ADVAVPALVEALTDPHLDVRKAAVLALTRWP--- 866 (897)
T ss_pred -----hhHHHHHHHhcCC-ChHHHHHHHHHHHhcc-----------ccchHHHHHHHhcCCCHHHHHHHHHHHhccC---
Confidence 1235577888775 7789999999998763 1235688888665555677777777776651
Q ss_pred CCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHH
Q 015513 345 ATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILR 383 (405)
Q Consensus 345 ~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~ 383 (405)
.++ .+.+.|...+. +.+..+|+.|+..|+
T Consensus 867 ~~~---------~a~~~L~~al~-D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 867 GDP---------AARDALTTALT-DSDADVRAYARRALA 895 (897)
T ss_pred CCH---------HHHHHHHHHHh-CCCHHHHHHHHHHHh
Confidence 221 23556666776 678889999998876
No 65
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.1e-06 Score=91.84 Aligned_cols=73 Identities=30% Similarity=0.569 Sum_probs=66.8
Q ss_pred CCCCCcccCcCCcccCCCccccC-CCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcC
Q 015513 4 IEVPQYFICPISLQIMKDPVTAI-TGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTHNG 79 (405)
Q Consensus 4 ~~~~~~~~Cpi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~~~ 79 (405)
.++|++|..|++..+|+|||++| +|++-||+.|+.++-. ..+.|.||.+++. +...||..|+..|+.|..++.
T Consensus 865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs--~~tdPFNR~pLt~-d~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS--DCTDPFNREPLTE-DMVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc--CCCCccccccCch-hhcCCCHHHHHHHHHHHHHhh
Confidence 35899999999999999999998 9999999999999876 3688999999997 899999999999999987753
No 66
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.26 E-value=1.2e-06 Score=78.58 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=55.0
Q ss_pred ccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHh
Q 015513 10 FICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTH 77 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~ 77 (405)
+.||+|+.++++|+-. +|||+||..||+..+-+. .+.||.|...----+.+.|+...+..|+.+...
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~ds-Df~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDS-DFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhc-cccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 8999999999999977 799999999999887664 688999965311126788998888888887664
No 67
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00056 Score=72.66 Aligned_cols=270 Identities=12% Similarity=0.119 Sum_probs=163.3
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHH-hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchh-hHHhhcccchhHH
Q 015513 106 HLRISTLKKMEALAMENERNRKSLEE-AFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNE-NKALVDHHNQDLI 183 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~~-~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~-~~~~i~~~g~~~i 183 (405)
.++..|++++..++...+.++..+.. ...+|.++..+......++......++.+|-.|....+. .+..+. ..|
T Consensus 174 ~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~----~ii 249 (1075)
T KOG2171|consen 174 PVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS----QII 249 (1075)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH----HHH
Confidence 58999999999888877655555555 467777877776543333322245566666666644332 122221 134
Q ss_pred HHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccch------------------------------------------h
Q 015513 184 GALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGL------------------------------------------L 221 (405)
Q Consensus 184 ~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~------------------------------------------~ 221 (405)
..-..+.++.. -+...|..|..+|..++....... .
T Consensus 250 ~~~l~Ia~n~~--l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~ 327 (1075)
T KOG2171|consen 250 QFSLEIAKNKE--LENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYR 327 (1075)
T ss_pred HHHHHHhhccc--ccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHH
Confidence 33334444321 455666666666666654411000 0
Q ss_pred hh-------ccc-------HHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHh--hcchHHHHHHhhcCCCC
Q 015513 222 ES-------TLN-------LDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITE--ANAVFELIELELTKPEK 285 (405)
Q Consensus 222 i~-------~~~-------~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~--~g~v~~Lv~lL~~~~~~ 285 (405)
+. ... .-.++.+-.+|.+. ++.-|++|+.||..++.+.. +.|.. ..+++..+..|.+. ++
T Consensus 328 ~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~--~~m~~~l~~Il~~Vl~~l~Dp-hp 403 (1075)
T KOG2171|consen 328 AAEQALDRLALHLGGKQVLPPLFEALEAMLQST-EWKERHAALLALSVIAEGCS--DVMIGNLPKILPIVLNGLNDP-HP 403 (1075)
T ss_pred HHHHHHHHHHhcCChhhehHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHHhhcCCC-CH
Confidence 00 000 11233444556666 88889999999988886432 12211 34666677777774 88
Q ss_pred CcHHHHHHHHHHHhcC--HhhHHHHHhcccchHHHHHHHHcc-ChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHH
Q 015513 286 STTELIFNLLAQLCSC--ADGRLKFREHAGAIAMVTKRLLRV-SPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKL 362 (405)
Q Consensus 286 ~~~e~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~~l~~~-s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~L 362 (405)
.++-.|+.++.+++.+ ++-..+. +.-.++.|+..+... +.+.+-+|+.++.+..-.+..+ ...-.++ +.+.++
T Consensus 404 rVr~AA~naigQ~stdl~p~iqk~~--~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~-~l~pYLd-~lm~~~ 479 (1075)
T KOG2171|consen 404 RVRYAALNAIGQMSTDLQPEIQKKH--HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS-ILEPYLD-GLMEKK 479 (1075)
T ss_pred HHHHHHHHHHHhhhhhhcHHHHHHH--HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH-HHHHHHH-HHHHHH
Confidence 9999999999999874 3333332 344667888855544 3477888888888877655432 3333333 567755
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhccc
Q 015513 363 CMVTQADCEKYLKDRAKEILRLHSNVW 389 (405)
Q Consensus 363 l~ll~~~~~~~~k~~A~~ll~~l~~~~ 389 (405)
+.+|...+++.+|+.|...|.......
T Consensus 480 l~~L~~~~~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 480 LLLLLQSSKPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 556655679999999999988776653
No 68
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2.6e-07 Score=85.14 Aligned_cols=68 Identities=24% Similarity=0.389 Sum_probs=55.7
Q ss_pred CCCcccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 015513 6 VPQYFICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAW 74 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~ 74 (405)
+-.+|.||||+.+++--++. .|+|.||+.||-+-+..+ ...||.|++.+.+...|.++...-.+|...
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~g-n~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSG-NNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc-CCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 45678999999999999988 599999999999998874 679999999886545677666666666554
No 69
>PF05536 Neurochondrin: Neurochondrin
Probab=98.12 E-value=0.00035 Score=71.32 Aligned_cols=244 Identities=14% Similarity=0.073 Sum_probs=150.2
Q ss_pred hHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchh---hHHhhcccchhHHHHHHHHHhhhc--C-CCcHHhHHHHHH
Q 015513 134 VVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNE---NKALVDHHNQDLIGALMWVLQWEN--N-DRHVAVKTSAMI 207 (405)
Q Consensus 134 ~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~---~~~~i~~~g~~~i~~Lv~lL~~~~--~-~~~~~~~~~A~~ 207 (405)
.+..-+++|++.. + +.+-.++.++..+..+++. .++.|-+.= +.+.+-++|++.. . ++....+.-|+.
T Consensus 6 ~l~~c~~lL~~~~-D---~~rfagL~lvtk~~~~~~~~~~~~~~v~~ai--g~~Fl~RLL~t~~~~~~~~~~~~~~Lavs 79 (543)
T PF05536_consen 6 SLEKCLSLLKSAD-D---TERFAGLLLVTKLLDADDEDSQTRRRVFEAI--GFKFLDRLLRTGSVPSDCPPEEYLSLAVS 79 (543)
T ss_pred HHHHHHHHhccCC-c---HHHHHHHHHHHHcCCCchhhHHHHHHHHHhc--ChhHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 3455567787654 2 2367777888888776543 233344443 4677888888622 0 123556788888
Q ss_pred HHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCc
Q 015513 208 VLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKST 287 (405)
Q Consensus 208 ~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~ 287 (405)
+|..++..++....-- -.+-||.|++.+....+..+...+..+|..++++++++..+++.|+|+.|.+.+.+ ....
T Consensus 80 vL~~f~~~~~~a~~~~--~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~--~~~~ 155 (543)
T PF05536_consen 80 VLAAFCRDPELASSPQ--MVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN--QSFQ 155 (543)
T ss_pred HHHHHcCChhhhcCHH--HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh--Ccch
Confidence 9999988665432211 13679999999988734499999999999999999999999999999999999987 3566
Q ss_pred HHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHc-cChhhhHHHHHHHHHhcc---cCC---CHHHHHHHHhcChHH
Q 015513 288 TELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLR-VSPATNDRAVHILSSISK---FSA---TYEVVLEMLSVGAVS 360 (405)
Q Consensus 288 ~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~s~~~~e~a~~~L~~L~~---~~~---~~~~~~~~~~~G~v~ 360 (405)
.+.|+.+|.+|+.... ....-++.-.+..++..|-+ .+....+.+..+|.-|.. ..+ .......---.....
T Consensus 156 ~E~Al~lL~~Lls~~~-~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~ 234 (543)
T PF05536_consen 156 MEIALNLLLNLLSRLG-QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRK 234 (543)
T ss_pred HHHHHHHHHHHHHhcc-hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHH
Confidence 8999999999986433 11111222223333332211 122223333333333332 221 000000001112344
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 361 KLCMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 361 ~Ll~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
-|-.+|++.-++..|..|-.+...+-+.
T Consensus 235 gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 235 GLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 5567778777888888777666666554
No 70
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.12 E-value=1.7e-06 Score=55.86 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=36.8
Q ss_pred CchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc
Q 015513 260 GGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS 300 (405)
Q Consensus 260 ~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~ 300 (405)
++++..++++|+||+|+.+|.+. +..+++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 56899999999999999999975 88999999999999974
No 71
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.10 E-value=5.9e-05 Score=60.83 Aligned_cols=134 Identities=16% Similarity=0.091 Sum_probs=106.3
Q ss_pred cHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhH
Q 015513 226 NLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGR 305 (405)
Q Consensus 226 ~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~ 305 (405)
..+-+..||+=..+..+.++++....-|.|.+.++-|-..+.+..++...+..|.+. ++.+++.+.+.|.|||....+.
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChHHH
Confidence 356788888888776689999999999999999999999999999999999999885 8889999999999999998888
Q ss_pred HHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHH
Q 015513 306 LKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLC 363 (405)
Q Consensus 306 ~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll 363 (405)
.-|++ ++|+|..+..+-+.....--.++..+..|+-.... .+.++...-++..+.
T Consensus 93 ~~I~e-a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt--~r~ell~p~Vv~~v~ 147 (173)
T KOG4646|consen 93 KFIRE-ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT--ERDELLSPAVVRTVQ 147 (173)
T ss_pred HHHHH-hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc--hhHHhccHHHHHHHH
Confidence 88755 78999988844333345556677888888854433 567766644444433
No 72
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2e-06 Score=76.50 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=43.2
Q ss_pred CCcccCcCCcccCCCccccCCCCcccHHHHHH-HHhcCCCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDPVTAITGISYDRESIEK-WLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~-~~~~~~~~~cP~~~~~~~~ 57 (405)
..+|.|+||.+.+.+|+.++|||.||-.||-. |-.+. ...||.||+...+
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k-~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKK-YEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhc-cccCchhhhhccc
Confidence 45899999999999999999999999999999 76553 5679999987643
No 73
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00029 Score=71.90 Aligned_cols=221 Identities=12% Similarity=0.052 Sum_probs=165.7
Q ss_pred chHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHH
Q 015513 133 FVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMV 212 (405)
Q Consensus 133 g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L 212 (405)
..|+.|+.-+.+.. -.+.+..|+..|..+++ .+|..++.. ++++|+..|..-. .+++....+..++.++
T Consensus 22 ETI~kLcDRvessT---L~eDRR~A~rgLKa~sr---kYR~~Vga~---Gmk~li~vL~~D~--~D~E~ik~~LdTl~il 90 (970)
T KOG0946|consen 22 ETIEKLCDRVESST---LLEDRRDAVRGLKAFSR---KYREEVGAQ---GMKPLIQVLQRDY--MDPEIIKYALDTLLIL 90 (970)
T ss_pred hHHHHHHHHHhhcc---chhhHHHHHHHHHHHHH---HHHHHHHHc---ccHHHHHHHhhcc--CCHHHHHHHHHHHHHH
Confidence 34555555554332 12448899999988874 567777765 5999999998632 6899999999999999
Q ss_pred Hhhhc------cchh----------hhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCC--chhHHH-HhhcchH
Q 015513 213 LELAS------KGLL----------ESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMG--GNRVKI-TEANAVF 273 (405)
Q Consensus 213 ~~~~~------~~~~----------i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~--~n~~~~-v~~g~v~ 273 (405)
...++ +... +++-..+.|..|+..+... +-.+|..+...|.+|-++. +-+..+ +..-+|.
T Consensus 91 ~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS 169 (970)
T KOG0946|consen 91 TSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGIS 169 (970)
T ss_pred HhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHH
Confidence 87663 1110 0123456788888888887 8899999999999997754 345444 4578999
Q ss_pred HHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccC----hhhhHHHHHHHHHhcccCCCHHH
Q 015513 274 ELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVS----PATNDRAVHILSSISKFSATYEV 349 (405)
Q Consensus 274 ~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s----~~~~e~a~~~L~~L~~~~~~~~~ 349 (405)
.|+.+|.+. .+.++..++-.|..|......-++++.-+++...|...+-... .-..+.|...|.+|-+.... +
T Consensus 170 ~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~S--N 246 (970)
T KOG0946|consen 170 KLMDLLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNIS--N 246 (970)
T ss_pred HHHHHHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcc--h
Confidence 999999985 7788999999999999888887887766778899998554322 25578899999998887665 5
Q ss_pred HHHHHhcChHHHHHHHHhc
Q 015513 350 VLEMLSVGAVSKLCMVTQA 368 (405)
Q Consensus 350 ~~~~~~~G~v~~Ll~ll~~ 368 (405)
+....+.|-|+.|..+|..
T Consensus 247 Q~~FrE~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 247 QNFFREGSYIPRLLKLLSV 265 (970)
T ss_pred hhHHhccccHHHHHhhcCc
Confidence 7778888899999977743
No 74
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.07 E-value=3.2e-06 Score=61.91 Aligned_cols=39 Identities=31% Similarity=0.743 Sum_probs=31.8
Q ss_pred CcCCcccCCCc------------c-ccCCCCcccHHHHHHHHhcCCCCCCCCCC
Q 015513 12 CPISLQIMKDP------------V-TAITGISYDRESIEKWLKTAKDTTCPVTK 52 (405)
Q Consensus 12 Cpi~~~~m~dP------------v-~~~~g~~~~r~~I~~~~~~~~~~~cP~~~ 52 (405)
|+||++.|.|| + ..+|||.|-..||++|++. ..+||.||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ--NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT--SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc--CCcCCCCC
Confidence 99999999554 2 3479999999999999976 35999996
No 75
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.8e-06 Score=87.73 Aligned_cols=53 Identities=17% Similarity=0.342 Sum_probs=46.4
Q ss_pred cccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 015513 9 YFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTS 63 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~ 63 (405)
-++||.|..-.+|-|+..|||.||..||+...+.. ...||.|+..|.. .++.+
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etR-qRKCP~Cn~aFga-nDv~~ 695 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETR-QRKCPKCNAAFGA-NDVHR 695 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHh-cCCCCCCCCCCCc-ccccc
Confidence 47999999999999999999999999999998763 6789999999976 55543
No 76
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.05 E-value=4e-05 Score=72.76 Aligned_cols=77 Identities=22% Similarity=0.460 Sum_probs=58.2
Q ss_pred ccCcCCcccCCCccccC-CCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAI-TGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTHNGIDRIPTPKS 88 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~~~~~~~~~~~~ 88 (405)
+.|.|++++-++||+.+ +||.|+|+-|++++.++ ..||+++++++. +++++-.. ..+-.|++
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~--G~DPIt~~pLs~-eelV~Ik~--------------~~~v~pk~ 63 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAET--GKDPITNEPLSI-EELVEIKV--------------PAQVRPKP 63 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHc--CCCCCCCCcCCH-HHeeeccc--------------cccccCCC
Confidence 57999999999999995 99999999999999875 589999999976 66655211 11233444
Q ss_pred CCchHHHHHHHHHhcc
Q 015513 89 ALNKDQVRKLVRDLDS 104 (405)
Q Consensus 89 ~~~~~~i~~lv~~l~~ 104 (405)
|. ...|+.|+..+.+
T Consensus 64 ~s-atSIPalL~~lQd 78 (506)
T KOG0289|consen 64 PS-ATSIPALLKTLQD 78 (506)
T ss_pred CC-ccchHHHHHHHHH
Confidence 33 3458888888754
No 77
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=4.4e-06 Score=81.07 Aligned_cols=72 Identities=18% Similarity=0.322 Sum_probs=55.0
Q ss_pred CCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcC---CCCCCCCCCCCCCCCCCCccc----HHHHHHHHHHHHhcC
Q 015513 7 PQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTA---KDTTCPVTKQPLPRDSGLTSN----HTLRRLIQAWCTHNG 79 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~---~~~~cP~~~~~~~~~~~~~~n----~~l~~~I~~~~~~~~ 79 (405)
+.+..||||++...-|+...|||.||-.||-++|... +...||.|+..+.. .++.|- ..-++.++..+..||
T Consensus 184 ~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~-kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 184 STDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL-KDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred CcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc-cceeeeeeccccccHHHHHHhcccC
Confidence 3378999999999999999999999999999999742 35679999988754 444432 223444677777777
No 78
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.97 E-value=0.00074 Score=67.78 Aligned_cols=145 Identities=12% Similarity=0.068 Sum_probs=104.7
Q ss_pred CcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc-CCchhHHHHhhcchHHH
Q 015513 197 RHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP-MGGNRVKITEANAVFEL 275 (405)
Q Consensus 197 ~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~-~~~n~~~~v~~g~v~~L 275 (405)
.+......|+..+.+++..-..-. .+..+..++.+||.+|..+ +..+...++++|.||.. ..+-+..+++.|+|..|
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~-tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALR-TGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-cCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 456666666666666653321111 1114567899999999888 78899999999999997 56789999999999999
Q ss_pred HHHhhcCCCCCcHHHHHHHHHHHhcCHhhHH--HHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCC
Q 015513 276 IELELTKPEKSTTELIFNLLAQLCSCADGRL--KFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSA 345 (405)
Q Consensus 276 v~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~--~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~ 345 (405)
.+++.+. +..++..++++|.++.-..+... +.... =+...++.++-......+|.+..+|+++...+.
T Consensus 467 ~s~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~k-i~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 467 ESMLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAK-IPANLILDLINDPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HHHhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHH-hhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence 9999985 88999999999999985544332 22221 123344443334556889999999999886643
No 79
>PF05536 Neurochondrin: Neurochondrin
Probab=97.96 E-value=0.00019 Score=73.20 Aligned_cols=154 Identities=13% Similarity=0.146 Sum_probs=116.9
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhcc----chhhhcccHHHHHHHHHHHhhcC------ChHHHHHHHH
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASK----GLLESTLNLDFFKEMVKLLKENI------SQQATKSGLH 251 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~----~~~i~~~~~g~i~~Lv~lL~~~~------~~~~~~~a~~ 251 (405)
.+..-+.+|++ .+.+.|-.+..++.++...++. ++.+. +.=+..-|-+||+++. ....+.-|+.
T Consensus 6 ~l~~c~~lL~~----~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~--~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavs 79 (543)
T PF05536_consen 6 SLEKCLSLLKS----ADDTERFAGLLLVTKLLDADDEDSQTRRRVF--EAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVS 79 (543)
T ss_pred HHHHHHHHhcc----CCcHHHHHHHHHHHHcCCCchhhHHHHHHHH--HhcChhHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 56777788887 6777778888888888765542 22233 2223466888888741 3456788999
Q ss_pred HHHHhccCCch--hHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhh
Q 015513 252 VLLQACPMGGN--RVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPAT 329 (405)
Q Consensus 252 aL~~L~~~~~n--~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~ 329 (405)
.|..+|..++. ...++ +-||.|++.+...++..+.+.++.+|..++.+++|+..++. .|+|+.|++.+ ...+..
T Consensus 80 vL~~f~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~-~~~~~~ 155 (543)
T PF05536_consen 80 VLAAFCRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEII-PNQSFQ 155 (543)
T ss_pred HHHHHcCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHH-HhCcch
Confidence 99999996653 34554 58999999998863338899999999999999999999987 68999999954 446778
Q ss_pred hHHHHHHHHHhcccCC
Q 015513 330 NDRAVHILSSISKFSA 345 (405)
Q Consensus 330 ~e~a~~~L~~L~~~~~ 345 (405)
.|.|..++.+++....
T Consensus 156 ~E~Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 156 MEIALNLLLNLLSRLG 171 (543)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999887544
No 80
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.96 E-value=2.8e-06 Score=78.00 Aligned_cols=66 Identities=17% Similarity=0.323 Sum_probs=52.1
Q ss_pred CCCcccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCC----CCcccHHHHHHHHHH
Q 015513 6 VPQYFICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDS----GLTSNHTLRRLIQAW 74 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~----~~~~n~~l~~~I~~~ 74 (405)
+-...+|++|..+|.|+-|+ .|=|||||+||-+++.. ..+||.|+..+.. + .+..+.+|+.++..+
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~--~~~CP~C~i~ih~-t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE--SKYCPTCDIVIHK-THPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH--hccCCccceeccC-ccccccCCcchHHHHHHHHH
Confidence 45567999999999999988 59999999999999987 5799999877643 3 355566666655443
No 81
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.91 E-value=8.3e-06 Score=79.67 Aligned_cols=66 Identities=24% Similarity=0.526 Sum_probs=52.7
Q ss_pred CCCcccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc-cHHHHHHHHHH
Q 015513 6 VPQYFICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTS-NHTLRRLIQAW 74 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~-n~~l~~~I~~~ 74 (405)
+++++.||+|..++.||+.. .|||.||+.||.+|... +..||.|+..+.. ....+ ...+++.+..|
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~~-~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN--HQKCPVCRQELTQ-AEELPVPRALRRELLKL 85 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc--CcCCcccccccch-hhccCchHHHHHHHHhc
Confidence 56779999999999999984 99999999999999876 6789999887765 33333 34456666655
No 82
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=1.8e-05 Score=78.32 Aligned_cols=73 Identities=36% Similarity=0.563 Sum_probs=65.3
Q ss_pred CCCCCcccCcCCcccCCCccccC-CCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcC
Q 015513 4 IEVPQYFICPISLQIMKDPVTAI-TGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTHNG 79 (405)
Q Consensus 4 ~~~~~~~~Cpi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~~~ 79 (405)
-++|++|..|++..+|+|||++| +|-+-+|+.|..++-. ..+.|.-|.|++- ++.+||..||+.|-.|....+
T Consensus 849 GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls--d~tDPFNRmPLtl-ddVtpn~eLrekIn~f~k~k~ 922 (929)
T COG5113 849 GDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS--DGTDPFNRMPLTL-DDVTPNAELREKINRFYKCKG 922 (929)
T ss_pred cCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc--CCCCccccCCCch-hhcCCCHHHHHHHHHHHhccc
Confidence 46999999999999999999996 8899999999999876 3689999999986 899999999999999866543
No 83
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=9.2e-06 Score=78.38 Aligned_cols=71 Identities=25% Similarity=0.432 Sum_probs=54.7
Q ss_pred CCCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCC----CCcccHHHHHHHHHHHH
Q 015513 4 IEVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDS----GLTSNHTLRRLIQAWCT 76 (405)
Q Consensus 4 ~~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~----~~~~n~~l~~~I~~~~~ 76 (405)
..++.+|-|-||...+.+||+++|||+||..||.+-... ...||.|+..+.... ...+|..++++|..|+.
T Consensus 79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~--~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~ 153 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ--ETECPLCRDELVELPALEQALSLNRLLCKLITKFLE 153 (398)
T ss_pred ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc--CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhh
Confidence 356889999999999999999999999999999997753 467999999885311 11234555566766655
No 84
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.87 E-value=0.00015 Score=58.61 Aligned_cols=132 Identities=17% Similarity=0.047 Sum_probs=102.6
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
-+..||.-.+. ..+.+.++....-|.|.+-++.|-... ...+++...|+-|... +...++.+...|.|+|..+.
T Consensus 17 Ylq~LV~efq~---tt~~eakeqv~ANLANFAYDP~Nys~L--rql~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~ 90 (173)
T KOG4646|consen 17 YLQHLVDEFQT---TTNIEAKEQVTANLANFAYDPINYSHL--RQLDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKT 90 (173)
T ss_pred HHHHHHHHHHH---hccHHHHHHHHHHHHhhccCcchHHHH--HHhhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChH
Confidence 45556655543 268889999888888888776554444 3778999999999988 89999999999999999999
Q ss_pred hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHh-hHHHHHhcccchHHHHHHHHcc
Q 015513 262 NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCAD-GRLKFREHAGAIAMVTKRLLRV 325 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~~l~~~ 325 (405)
|.+.|.+++.+|.++..+++. .+.+...|+.+|..|+-... .|..+. -|++|+.+.+.
T Consensus 91 n~~~I~ea~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~Rt~r~ell-----~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 91 NAKFIREALGLPLIIFVLSSP-PEITVHSAALFLQLLEFGERTERDELL-----SPAVVRTVQRW 149 (173)
T ss_pred HHHHHHHhcCCceEEeecCCC-hHHHHHHHHHHHHHhcCcccchhHHhc-----cHHHHHHHHHH
Confidence 999999999999999999885 66778889999999875322 344443 35666655443
No 85
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.81 E-value=0.00015 Score=54.97 Aligned_cols=88 Identities=22% Similarity=0.266 Sum_probs=69.1
Q ss_pred HHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCch
Q 015513 183 IGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGN 262 (405)
Q Consensus 183 i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n 262 (405)
|+.|++.|.+ +.++.+|..|+.+|..+ . ...+++.|+++++++ ++.++..|+.+|..+-
T Consensus 1 i~~L~~~l~~---~~~~~vr~~a~~~L~~~----------~--~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~----- 59 (88)
T PF13646_consen 1 IPALLQLLQN---DPDPQVRAEAARALGEL----------G--DPEAIPALIELLKDE-DPMVRRAAARALGRIG----- 59 (88)
T ss_dssp HHHHHHHHHT---SSSHHHHHHHHHHHHCC----------T--HHHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH-----
T ss_pred CHHHHHHHhc---CCCHHHHHHHHHHHHHc----------C--CHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC-----
Confidence 5788888843 28999999999998833 2 346799999999887 9999999999998772
Q ss_pred hHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHH
Q 015513 263 RVKITEANAVFELIELELTKPEKSTTELIFNLLA 296 (405)
Q Consensus 263 ~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~ 296 (405)
+..+++.|.+++.+..+..++..|+.+|+
T Consensus 60 -----~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -----DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45589999999987534456788887774
No 86
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.006 Score=65.16 Aligned_cols=252 Identities=16% Similarity=0.079 Sum_probs=147.9
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHH--hchHHHHHHHHHhhccC--------CCc----hhHHHHHHHHHhcCCCchhh
Q 015513 106 HLRISTLKKMEALAMENERNRKSLEE--AFVVRALVLFIITSYKG--------NKT----TGLEEALRILSLVWSPSNEN 171 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~~--~g~v~~Lv~lL~~~~~~--------~~~----~~~e~A~~~L~~L~~~~~~~ 171 (405)
..|..|+..|-.+++.-+...+.... .-.++.+..++.....+ .+. .--..|..+|-.++.+-..
T Consensus 264 ~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g- 342 (1075)
T KOG2171|consen 264 SIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG- 342 (1075)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh-
Confidence 67777888887777654433322222 23444444444322111 000 0023344555555433211
Q ss_pred HHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHH
Q 015513 172 KALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLH 251 (405)
Q Consensus 172 ~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~ 251 (405)
+.+. .. .++.+-.+|+| .+...|..|..+|..++.... +.++. .-...++..+..|+++ ++.+|-+|+.
T Consensus 343 -~~v~-p~--~~~~l~~~l~S----~~w~~R~AaL~Als~i~EGc~-~~m~~-~l~~Il~~Vl~~l~Dp-hprVr~AA~n 411 (1075)
T KOG2171|consen 343 -KQVL-PP--LFEALEAMLQS----TEWKERHAALLALSVIAEGCS-DVMIG-NLPKILPIVLNGLNDP-HPRVRYAALN 411 (1075)
T ss_pred -hheh-HH--HHHHHHHHhcC----CCHHHHHHHHHHHHHHHcccH-HHHHH-HHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 1111 11 45555577777 888889988888888875432 22222 2235666777777887 9999999999
Q ss_pred HHHHhccCC-chhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHH----HHHc-c
Q 015513 252 VLLQACPMG-GNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTK----RLLR-V 325 (405)
Q Consensus 252 aL~~L~~~~-~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~----~l~~-~ 325 (405)
|+..++.+- ..-.+--..-.+|.|+..+.+..+..++.+|+.+|.|......+ ..+ . .-++.|++ .|.. .
T Consensus 412 aigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l-~--pYLd~lm~~~l~~L~~~~ 487 (1075)
T KOG2171|consen 412 AIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SIL-E--PYLDGLMEKKLLLLLQSS 487 (1075)
T ss_pred HHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHH-H--HHHHHHHHHHHHHHhcCC
Confidence 999999853 33333344557788999998754668899999999998653222 222 1 23344444 2322 3
Q ss_pred ChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHH
Q 015513 326 SPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKD 376 (405)
Q Consensus 326 s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~ 376 (405)
+...+|.++.++..++....+. ..... .-.++.|...|+....+..|.
T Consensus 488 ~~~v~e~vvtaIasvA~AA~~~-F~pY~--d~~Mp~L~~~L~n~~~~d~r~ 535 (1075)
T KOG2171|consen 488 KPYVQEQAVTAIASVADAAQEK-FIPYF--DRLMPLLKNFLQNADDKDLRE 535 (1075)
T ss_pred chhHHHHHHHHHHHHHHHHhhh-hHhHH--HHHHHHHHHHHhCCCchhhHH
Confidence 5688999999999988654432 22221 125777778887654344443
No 87
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.76 E-value=5.4e-05 Score=48.67 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=36.6
Q ss_pred hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHh
Q 015513 169 NENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLE 214 (405)
Q Consensus 169 ~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~ 214 (405)
++++..+.+.| ++|.|+.+|++ .+.++++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g--~i~~Lv~ll~~----~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAG--GIPPLVQLLKS----PDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTT--HHHHHHHHTTS----SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcc--cHHHHHHHHcC----CCHHHHHHHHHHHHHHhC
Confidence 46788899998 99999999998 999999999999999973
No 88
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.015 Score=56.17 Aligned_cols=249 Identities=12% Similarity=0.104 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCc------h---hhHHhhcccc
Q 015513 109 ISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPS------N---ENKALVDHHN 179 (405)
Q Consensus 109 ~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~------~---~~~~~i~~~g 179 (405)
...++.++.++. -|.--..+++.++|+.|+.+|...+.+. --..+.+|..|+-.+ + ..-..+++++
T Consensus 102 hd~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI----~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~ 176 (536)
T KOG2734|consen 102 HDIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDI----AIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQ 176 (536)
T ss_pred HHHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchh----HHHHHHHHHHhhhhcccccccccHHHHHHHHHhcc
Confidence 446666776663 5666678899999999999998665442 456667888887422 1 1234455555
Q ss_pred hhHHHHHHHHHhhhc--CCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhc-CChHHHHHHHHHHHHh
Q 015513 180 QDLIGALMWVLQWEN--NDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKEN-ISQQATKSGLHVLLQA 256 (405)
Q Consensus 180 ~~~i~~Lv~lL~~~~--~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~L 256 (405)
.++.|+.-+..-- .........+...++.|+......-...+ .+.|.+.-|..-+... .-..-+.-|...|.-+
T Consensus 177 --vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~-~e~~ll~WLL~rl~~k~~f~aNk~YasEiLail 253 (536)
T KOG2734|consen 177 --VLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEI-VEQGLLSWLLKRLKGKAAFDANKQYASEILAIL 253 (536)
T ss_pred --HHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHH-HHhhHHHHHHHHHhcccCcchhHHHHHHHHHHH
Confidence 8888887766410 00223344667777888876655444444 4667766666644332 2234566777777777
Q ss_pred ccCC-chhHHHHhhcchHHHHHHhhc----CC----CCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccCh
Q 015513 257 CPMG-GNRVKITEANAVFELIELELT----KP----EKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSP 327 (405)
Q Consensus 257 ~~~~-~n~~~~v~~g~v~~Lv~lL~~----~~----~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~ 327 (405)
-.+. +|+.....-.+|..|++-+.. ++ +.+.-++-...|..+...++||..++..+ |+.. ..++++...
T Consensus 254 lq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~E-GlqL-m~Lmlr~Kk 331 (536)
T KOG2734|consen 254 LQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGE-GLQL-MNLMLREKK 331 (536)
T ss_pred hccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccc-cHHH-HHHHHHHHH
Confidence 6654 589888899999999988742 11 12334455555655657899999998755 5544 344555555
Q ss_pred hhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHh
Q 015513 328 ATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQ 367 (405)
Q Consensus 328 ~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~ 367 (405)
.....+..+|-....+.....++...++.+++..+..++-
T Consensus 332 ~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 332 VSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 6677788888887666554468889999888888886664
No 89
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.72 E-value=0.0016 Score=65.39 Aligned_cols=154 Identities=12% Similarity=0.045 Sum_probs=113.1
Q ss_pred cchhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhH
Q 015513 103 DSGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDL 182 (405)
Q Consensus 103 ~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~ 182 (405)
++......|+-.+++++..-..-|..+-..+++.+||++|..+. ......++++|.||...-...|....+.| +
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~----~~i~~~~lgai~NlVmefs~~kskfl~~n--g 462 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPE----IMIMGITLGAICNLVMEFSNLKSKFLRNN--G 462 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcc----hhHHHHHHHHHHHHHhhcccHHHHHHHcC--c
Confidence 34466667777888877655555555666899999999996442 23478889999999865556777788887 8
Q ss_pred HHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHH-HHHHHHHHHhhcCChHHHHHHHHHHHHhccCC-
Q 015513 183 IGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLD-FFKEMVKLLKENISQQATKSGLHVLLQACPMG- 260 (405)
Q Consensus 183 i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g-~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~- 260 (405)
|..+.+++.+ .++..+.++.|+|+++.-..+...... .... +-..++.+..++ ++.+++.++..|+||.-+.
T Consensus 463 Id~l~s~~~~----~~~n~r~~~~~~Lr~l~f~~de~~k~~-~~~ki~a~~i~~l~nd~-d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 463 IDILESMLTD----PDFNSRANSLWVLRHLMFNCDEEEKFQ-LLAKIPANLILDLINDP-DWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HHHHHHHhcC----CCchHHHHHHHHHHHHHhcchHHHHHH-HHHHhhHHHHHHHHhCC-CHHHHHHHHHHHHHhhcCcH
Confidence 9999999998 899999999999999986665544332 1112 234566677777 9999999999999998754
Q ss_pred chhHHHHh
Q 015513 261 GNRVKITE 268 (405)
Q Consensus 261 ~n~~~~v~ 268 (405)
+....+++
T Consensus 537 ~svdfll~ 544 (678)
T KOG1293|consen 537 KSVDFLLE 544 (678)
T ss_pred HHHHHHHH
Confidence 34444444
No 90
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.69 E-value=0.0049 Score=63.12 Aligned_cols=166 Identities=16% Similarity=0.152 Sum_probs=93.5
Q ss_pred cccHHHHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHH
Q 015513 62 TSNHTLRRLIQAWCTHNGIDRIPTPKSALNKDQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALV 139 (405)
Q Consensus 62 ~~n~~l~~~I~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv 139 (405)
..++.++++.--+...-.... +..-.-.+-.+.+.+.+ +..+.-|++.|.++. +++.. .-.++.+.
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~-----~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~-----~~l~~~v~ 120 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHED-----PELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMA-----EPLIPDVI 120 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTS-----HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHH-----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcc-----hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchh-----hHHHHHHH
Confidence 556778888777666543321 00001123345556644 467788889888876 22222 23467777
Q ss_pred HHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHH-Hhhhcc
Q 015513 140 LFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMV-LELASK 218 (405)
Q Consensus 140 ~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L-~~~~~~ 218 (405)
++|.+++ +-++..|+.++..+...+++ .+ +.. .++.+..+|.. .++.++..|+.++..+ ...+..
T Consensus 121 ~ll~~~~----~~VRk~A~~~l~~i~~~~p~---~~-~~~--~~~~l~~lL~d----~~~~V~~~a~~~l~~i~~~~~~~ 186 (526)
T PF01602_consen 121 KLLSDPS----PYVRKKAALALLKIYRKDPD---LV-EDE--LIPKLKQLLSD----KDPSVVSAALSLLSEIKCNDDSY 186 (526)
T ss_dssp HHHHSSS----HHHHHHHHHHHHHHHHHCHC---CH-HGG--HHHHHHHHTTH----SSHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHhcCCc----hHHHHHHHHHHHHHhccCHH---HH-HHH--HHHHHhhhccC----CcchhHHHHHHHHHHHccCcchh
Confidence 8887543 35588888888877644332 22 121 47788888887 8899999999999998 222211
Q ss_pred chhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 015513 219 GLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP 258 (405)
Q Consensus 219 ~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~ 258 (405)
.. + -...+..|.+++... ++-.+...++.|..++.
T Consensus 187 ~~-~---~~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 187 KS-L---IPKLIRILCQLLSDP-DPWLQIKILRLLRRYAP 221 (526)
T ss_dssp TT-H---HHHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTS
T ss_pred hh-h---HHHHHHHhhhccccc-chHHHHHHHHHHHhccc
Confidence 11 1 123344444444333 44455555555554444
No 91
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.69 E-value=0.0011 Score=64.09 Aligned_cols=247 Identities=13% Similarity=0.089 Sum_probs=161.3
Q ss_pred HHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHH
Q 015513 126 RKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSA 205 (405)
Q Consensus 126 r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A 205 (405)
.+.+...|++..|++++.+++-.. .++.+|..+|..+... ++++.++..| +..++.+.+. ...++.+...
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et--~vRve~~rlLEq~~~a--eN~d~va~~~---~~~Il~lAK~---~e~~e~aR~~ 242 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLET--SVRVEAARLLEQILVA--ENRDRVARIG---LGVILNLAKE---REPVELARSV 242 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhH--HHHHHHHHHHHHHHhh--hhhhHHhhcc---chhhhhhhhh---cCcHHHHHHH
Confidence 356777899999999998775432 4578888888887644 5677777654 3333344332 1678888899
Q ss_pred HHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCC--chhHHHHhhcchHHHHHHhhcCC
Q 015513 206 MIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMG--GNRVKITEANAVFELIELELTKP 283 (405)
Q Consensus 206 ~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~--~n~~~~v~~g~v~~Lv~lL~~~~ 283 (405)
+.+|.++-.+.+..-.-. +..|++..++-..+.. ++...+.++-||.|.+.+. ..++.|++..+-..|.-+-.+.
T Consensus 243 ~~il~~mFKHSeet~~~L-vaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk- 319 (832)
T KOG3678|consen 243 AGILEHMFKHSEETCQRL-VAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK- 319 (832)
T ss_pred HHHHHHHhhhhHHHHHHH-HhhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch-
Confidence 999999987654333222 4678999888777776 7999999999999998754 5788899998989999888875
Q ss_pred CCCcHHHHHHHHHHHhcCHhhHHHHHhcccc---hHHHHHHHHcc--------------------------ChhhhHHHH
Q 015513 284 EKSTTELIFNLLAQLCSCADGRLKFREHAGA---IAMVTKRLLRV--------------------------SPATNDRAV 334 (405)
Q Consensus 284 ~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~---i~~Lv~~l~~~--------------------------s~~~~e~a~ 334 (405)
|+-++-+|+-+...|+...|--..+ +..|. |.+|+..+.-. |..-...++
T Consensus 320 Del~R~~AClAV~vlat~KE~E~~V-rkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i 398 (832)
T KOG3678|consen 320 DELLRLHACLAVAVLATNKEVEREV-RKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCI 398 (832)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHH-hhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhh
Confidence 7778889999999998776643333 22222 33444321110 111111222
Q ss_pred HHHHHhcccC---CCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 335 HILSSISKFS---ATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 335 ~~L~~L~~~~---~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
++.+ +|-.. ..+.-....-+-|+|+.|-++.. ..+...-.-|.+.|..+.+.
T Consensus 399 ~AF~-l~~EAaIKs~Q~K~kVFseIGAIQaLKevaS-S~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 399 GAFY-LCAEAAIKSLQGKTKVFSEIGAIQALKEVAS-SPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred HHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHhccc
Confidence 2222 11110 01111233446789999988876 33444556677888888775
No 92
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.60 E-value=0.018 Score=58.96 Aligned_cols=135 Identities=16% Similarity=0.084 Sum_probs=89.8
Q ss_pred chhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHH
Q 015513 151 TTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFF 230 (405)
Q Consensus 151 ~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i 230 (405)
+..+..++.+|..++...+..... .. .++.+..++++ .+..+...|+.++..+..... . -..++
T Consensus 206 ~~~q~~il~~l~~~~~~~~~~~~~---~~--~i~~l~~~l~s----~~~~V~~e~~~~i~~l~~~~~----~---~~~~~ 269 (526)
T PF01602_consen 206 PWLQIKILRLLRRYAPMEPEDADK---NR--IIEPLLNLLQS----SSPSVVYEAIRLIIKLSPSPE----L---LQKAI 269 (526)
T ss_dssp HHHHHHHHHHHTTSTSSSHHHHHH---HH--HHHHHHHHHHH----HHHHHHHHHHHHHHHHSSSHH----H---HHHHH
T ss_pred hHHHHHHHHHHHhcccCChhhhhH---HH--HHHHHHHHhhc----cccHHHHHHHHHHHHhhcchH----H---HHhhH
Confidence 345667777777776554332211 22 67777788887 778888888888888765443 2 23788
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHH
Q 015513 231 KEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKF 308 (405)
Q Consensus 231 ~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i 308 (405)
++|+++|.+. ++..+-.++.+|..++... ...+. .....+..+....+..++..++.+|..++. .++...+
T Consensus 270 ~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~---~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~-~~n~~~I 340 (526)
T PF01602_consen 270 NPLIKLLSSS-DPNVRYIALDSLSQLAQSN---PPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLAN-ESNVKEI 340 (526)
T ss_dssp HHHHHHHTSS-SHHHHHHHHHHHHHHCCHC---HHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHhhcc-cchhehhHHHHHHHhhccc---chhhh--hhhhhhheecCCCChhHHHHHHHHHhhccc-ccchhhH
Confidence 9999999976 8889999999999999854 23333 222234455522367889999999999874 3444433
No 93
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.58 E-value=7.3e-05 Score=55.36 Aligned_cols=47 Identities=28% Similarity=0.473 Sum_probs=36.1
Q ss_pred ccCcCCcccCCC-cccc-CCCCcccHHHHHHHHhcC-CCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKD-PVTA-ITGISYDRESIEKWLKTA-KDTTCPVTKQPLP 56 (405)
Q Consensus 10 ~~Cpi~~~~m~d-Pv~~-~~g~~~~r~~I~~~~~~~-~~~~cP~~~~~~~ 56 (405)
-.||.|...=.| |++. .|||.|-..||.+|++.. ....||.||++..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 356666665555 7666 799999999999999863 2468999998753
No 94
>PTZ00429 beta-adaptin; Provisional
Probab=97.57 E-value=0.034 Score=58.85 Aligned_cols=177 Identities=8% Similarity=-0.003 Sum_probs=118.3
Q ss_pred hHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCch
Q 015513 92 KDQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSN 169 (405)
Q Consensus 92 ~~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~ 169 (405)
+..+..|-..|.+ ...+.++++.+-.....+.+. ....+-+++++.+. +.+.+.-..-.|.+.+...+
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~----d~elKKLvYLYL~~ya~~~p 100 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPST----DLELKKLVYLYVLSTARLQP 100 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcccCh
Confidence 3455556666643 366778888765443322211 12344455666543 23445666666666766544
Q ss_pred hhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHH
Q 015513 170 ENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSG 249 (405)
Q Consensus 170 ~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a 249 (405)
+. .+. ++..|.+-+.+ .++.+|..|+++|.++-... +. .-.++++.+.|.+. ++-+|+.|
T Consensus 101 el--alL-----aINtl~KDl~d----~Np~IRaLALRtLs~Ir~~~-----i~---e~l~~~lkk~L~D~-~pYVRKtA 160 (746)
T PTZ00429 101 EK--ALL-----AVNTFLQDTTN----SSPVVRALAVRTMMCIRVSS-----VL---EYTLEPLRRAVADP-DPYVRKTA 160 (746)
T ss_pred HH--HHH-----HHHHHHHHcCC----CCHHHHHHHHHHHHcCCcHH-----HH---HHHHHHHHHHhcCC-CHHHHHHH
Confidence 42 121 57777787877 89999999999988874321 11 24567777888877 89999999
Q ss_pred HHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcC
Q 015513 250 LHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSC 301 (405)
Q Consensus 250 ~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~ 301 (405)
+-++..+-.... ..+.+.|.++.|.++|.+. +..+..+|+.+|..+...
T Consensus 161 alai~Kly~~~p--elv~~~~~~~~L~~LL~D~-dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 161 AMGLGKLFHDDM--QLFYQQDFKKDLVELLNDN-NPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHHHHHHHhhCc--ccccccchHHHHHHHhcCC-CccHHHHHHHHHHHHHHh
Confidence 999999976433 2345678899999999875 889999999999999754
No 95
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=4.4e-05 Score=69.23 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=41.2
Q ss_pred ccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
-.|+||+..+.-||.++|+|.||.-||+--..+ +..+||+|+.++.+
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n-dk~~CavCR~pids 54 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKN-DKKTCAVCRFPIDS 54 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhc-CCCCCceecCCCCc
Confidence 369999999999999999999999999975544 36789999999965
No 96
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.065 Score=57.05 Aligned_cols=250 Identities=13% Similarity=0.116 Sum_probs=153.7
Q ss_pred chhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHH
Q 015513 104 SGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLI 183 (405)
Q Consensus 104 ~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i 183 (405)
.+..+.-|+..+..+.. +...-..+++.|.+..|+.+|-|.- ..++.++.+|..|++...-.++.+. .| ++
T Consensus 1785 ~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS~P-----S~R~~vL~vLYAL~S~~~i~keA~~-hg--~l 1855 (2235)
T KOG1789|consen 1785 HPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHSQP-----SMRARVLDVLYALSSNGQIGKEALE-HG--GL 1855 (2235)
T ss_pred CchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhcCh-----HHHHHHHHHHHHHhcCcHHHHHHHh-cC--ch
Confidence 34566677777766654 4444566778899989999986532 2389999999999987755555554 44 56
Q ss_pred HHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhc--cchhhh--------------------------------------
Q 015513 184 GALMWVLQWENNDRHVAVKTSAMIVLKMVLELAS--KGLLES-------------------------------------- 223 (405)
Q Consensus 184 ~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~--~~~~i~-------------------------------------- 223 (405)
..+..++-. ..++..+..|+.+|..+-...- .+..|.
T Consensus 1856 ~yil~~~c~---~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~ 1932 (2235)
T KOG1789|consen 1856 MYILSILCL---TNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEV 1932 (2235)
T ss_pred hhhhHHHhc---cCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHh
Confidence 566665554 2567777777777777643321 111000
Q ss_pred ------------------------------------------------------ccc------------HHHHHHHHHHH
Q 015513 224 ------------------------------------------------------TLN------------LDFFKEMVKLL 237 (405)
Q Consensus 224 ------------------------------------------------------~~~------------~g~i~~Lv~lL 237 (405)
+.. .|.++.+.+++
T Consensus 1933 ~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm 2012 (2235)
T KOG1789|consen 1933 TRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELM 2012 (2235)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHh
Confidence 000 01222222333
Q ss_pred hhc-CChHHHHHHHHHHHHhcc-CCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccch
Q 015513 238 KEN-ISQQATKSGLHVLLQACP-MGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAI 315 (405)
Q Consensus 238 ~~~-~~~~~~~~a~~aL~~L~~-~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i 315 (405)
... +.......-..|+..|-+ ++.-..++-.-|.+|-++..+.-. +..+-..|+.+|..|+.+.-...++.. ..++
T Consensus 2013 ~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~-n~s~P~SaiRVlH~Lsen~~C~~AMA~-l~~i 2090 (2235)
T KOG1789|consen 2013 SRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQ-NTSAPRSAIRVLHELSENQFCCDAMAQ-LPCI 2090 (2235)
T ss_pred cCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhc-CCcCcHHHHHHHHHHhhccHHHHHHhc-cccc
Confidence 221 111122222233333333 333444555679999999887654 456678999999999887665555543 4466
Q ss_pred HHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhcc
Q 015513 316 AMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQAD 369 (405)
Q Consensus 316 ~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~ 369 (405)
.+++..+++ ....-..|..+|..+.....+ +.+..+++.|.|+.|+.+|...
T Consensus 2091 ~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~-eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2091 DGIMKSMKK-QPSLMGLAAEALKRLMKRNTG-ELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred hhhHHHHHh-cchHHHHHHHHHHHHHHHhHH-HHHHHHhccCcHHHHHHHhccc
Confidence 667775443 334444888889888875443 5888899999999999999753
No 97
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.51 E-value=0.026 Score=54.87 Aligned_cols=265 Identities=12% Similarity=0.108 Sum_probs=167.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHH
Q 015513 105 GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIG 184 (405)
Q Consensus 105 ~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~ 184 (405)
.+++..+++.+|-+.. ++..-..+.+.+.=-.++..|...... ..++++|+.++..+..-.... +.+ ..+ .+.
T Consensus 39 ~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~--~~ER~QALkliR~~l~~~~~~-~~~-~~~--vvr 111 (371)
T PF14664_consen 39 KEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKN--DVEREQALKLIRAFLEIKKGP-KEI-PRG--VVR 111 (371)
T ss_pred HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCC--hHHHHHHHHHHHHHHHhcCCc-ccC-CHH--HHH
Confidence 5777788888887765 556667777877777777777654322 356889998887765332111 222 233 889
Q ss_pred HHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhH
Q 015513 185 ALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRV 264 (405)
Q Consensus 185 ~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~ 264 (405)
.+|.+..+ .+...+..|..+|..|+-.+.. . + ...||+..|++.+-++ ..+..+..+.++..+-.++..|+
T Consensus 112 alvaiae~----~~D~lr~~cletL~El~l~~P~--l-v-~~~gG~~~L~~~l~d~-~~~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 112 ALVAIAEH----EDDRLRRICLETLCELALLNPE--L-V-AECGGIRVLLRALIDG-SFSISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred HHHHHHhC----CchHHHHHHHHHHHHHHhhCHH--H-H-HHcCCHHHHHHHHHhc-cHhHHHHHHHHHHHHhCCcchhh
Confidence 99999997 7888999999999999876432 2 2 3569999999999886 55688899999999999888887
Q ss_pred HHHhhcchHHHHHHhhcC-----C-CC--CcHHHHHHHHHHHhcCHhhHHHHHhcc-cchHHHHHHHHccChhhhHHHHH
Q 015513 265 KITEANAVFELIELELTK-----P-EK--STTELIFNLLAQLCSCADGRLKFREHA-GAIAMVTKRLLRVSPATNDRAVH 335 (405)
Q Consensus 265 ~~v~~g~v~~Lv~lL~~~-----~-~~--~~~e~a~~~L~~L~~~~~~~~~i~~~~-g~i~~Lv~~l~~~s~~~~e~a~~ 335 (405)
.+...--+..++.-+.+. . +. +.-..+..++..+-.+-.|-..+..+. .++..||..|...+...++.-+.
T Consensus 183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ild 262 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILD 262 (371)
T ss_pred hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence 665433344444444332 0 11 123344445544444444433332222 45666666444333344444333
Q ss_pred HHHHh------------------------------cccC--------------CC------HHHHHHHHhcChHHHHHHH
Q 015513 336 ILSSI------------------------------SKFS--------------AT------YEVVLEMLSVGAVSKLCMV 365 (405)
Q Consensus 336 ~L~~L------------------------------~~~~--------------~~------~~~~~~~~~~G~v~~Ll~l 365 (405)
++..+ .... .+ .-....++++|.++.|+.+
T Consensus 263 ll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~l 342 (371)
T PF14664_consen 263 LLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVEL 342 (371)
T ss_pred HHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 33321 1000 00 0123456789999999999
Q ss_pred HhccCcHHHHHHHHHHHHHh
Q 015513 366 TQADCEKYLKDRAKEILRLH 385 (405)
Q Consensus 366 l~~~~~~~~k~~A~~ll~~l 385 (405)
.....++....+|.-+|.-+
T Consensus 343 i~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 343 IESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HhcCCCchHHHHHHHHHHHH
Confidence 99766788899998877643
No 98
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=8.9e-05 Score=66.40 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=40.9
Q ss_pred CcccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
.+..||+|++.-..|.++ +|||.||.-||..-.......+||.|+....
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 456999999999999977 6999999999998765434679999998764
No 99
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.44 E-value=0.00011 Score=71.34 Aligned_cols=49 Identities=18% Similarity=0.338 Sum_probs=42.5
Q ss_pred cccCcCCcccCCCccccCCCCcccHHHHHHHHhc---CCCCCCCCCCCCCCC
Q 015513 9 YFICPISLQIMKDPVTAITGISYDRESIEKWLKT---AKDTTCPVTKQPLPR 57 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~---~~~~~cP~~~~~~~~ 57 (405)
+..|-+|.+.-.||+...|.|+|||-||.++... +.+.+||.|...++-
T Consensus 536 ~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred ceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 4789999999999999999999999999999753 224789999988864
No 100
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.38 E-value=0.00025 Score=45.23 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=35.2
Q ss_pred CchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHh
Q 015513 260 GGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLC 299 (405)
Q Consensus 260 ~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~ 299 (405)
++++..+++.|++++|++++.++ +..+++.++++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHc
Confidence 35888899999999999999975 8899999999999996
No 101
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00011 Score=66.50 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=44.9
Q ss_pred ccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 015513 10 FICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLI 71 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I 71 (405)
|.|-||.+.|.+||+..|||+||..|-.+-+.. ...|++|.+... ..+-+...|....
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk--~~~c~vC~~~t~--g~~~~akeL~~~L 299 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK--GEKCYVCSQQTH--GSFNVAKELLVSL 299 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhcccccc--CCcceecccccc--cccchHHHHHHHH
Confidence 789999999999999999999999998777654 368999998763 3344444444433
No 102
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=7.5e-05 Score=76.47 Aligned_cols=45 Identities=22% Similarity=0.541 Sum_probs=40.4
Q ss_pred cccCcCCcccCCC-----ccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCC
Q 015513 9 YFICPISLQIMKD-----PVTAITGISYDRESIEKWLKTAKDTTCPVTKQPL 55 (405)
Q Consensus 9 ~~~Cpi~~~~m~d-----Pv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~ 55 (405)
+-.|+||.+.|.. |-.++|||.|...|+.+|+++ ..+||.||..+
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er--~qtCP~CR~~~ 340 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER--QQTCPTCRTVL 340 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHH--hCcCCcchhhh
Confidence 5689999999999 778899999999999999987 47999999844
No 103
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.33 E-value=0.033 Score=54.25 Aligned_cols=253 Identities=11% Similarity=0.109 Sum_probs=157.7
Q ss_pred HHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhh
Q 015513 114 KMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWE 193 (405)
Q Consensus 114 ~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~ 193 (405)
.|-.+-+.++.-|..+.-.-..+.+..++-+.. .+++..+..++..+..+.+.. ..+.+.+ .--.++.-|...
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~----~~vraa~yRilRy~i~d~~~l-~~~~~l~--id~~ii~SL~~~ 78 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDS----KEVRAAGYRILRYLISDEESL-QILLKLH--IDIFIIRSLDRD 78 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHHcCHHHH-HHHHHcC--CchhhHhhhccc
Confidence 344445566666665555455555554443321 345778888998887766444 4444443 233344556542
Q ss_pred cCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchH
Q 015513 194 NNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVF 273 (405)
Q Consensus 194 ~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~ 273 (405)
. .+...|++|...++.+.....+...+ ..|.+..+|.+..+. +...+..++++|..|+.. |-..++++|++.
T Consensus 79 ~--~~~~ER~QALkliR~~l~~~~~~~~~---~~~vvralvaiae~~-~D~lr~~cletL~El~l~--~P~lv~~~gG~~ 150 (371)
T PF14664_consen 79 N--KNDVEREQALKLIRAFLEIKKGPKEI---PRGVVRALVAIAEHE-DDRLRRICLETLCELALL--NPELVAECGGIR 150 (371)
T ss_pred C--CChHHHHHHHHHHHHHHHhcCCcccC---CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhh--CHHHHHHcCCHH
Confidence 1 45667899999999998775544433 469999999999987 778999999999999984 445678899999
Q ss_pred HHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHcc----C---h--hhhHHHHHHHHHhccc-
Q 015513 274 ELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRV----S---P--ATNDRAVHILSSISKF- 343 (405)
Q Consensus 274 ~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~----s---~--~~~e~a~~~L~~L~~~- 343 (405)
.|++.+.++ .-.+.+..+.++..+-.++..|.-+.. .--+..++.-.... . . ..-..+..++..+-+.
T Consensus 151 ~L~~~l~d~-~~~~~~~l~~~lL~lLd~p~tR~yl~~-~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW 228 (371)
T PF14664_consen 151 VLLRALIDG-SFSISESLLDTLLYLLDSPRTRKYLRP-GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSW 228 (371)
T ss_pred HHHHHHHhc-cHhHHHHHHHHHHHHhCCcchhhhhcC-CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcC
Confidence 999999886 444889999999999999998886643 22344444322211 0 1 1112223333322211
Q ss_pred CCCHHHHHHHH-hcChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 344 SATYEVVLEML-SVGAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 344 ~~~~~~~~~~~-~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
++ ..---. +..++..|+..|+. +.++.|+..-.++--+-+
T Consensus 229 ~G---Ll~l~~~~~~~lksLv~~L~~-p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 229 PG---LLYLSMNDFRGLKSLVDSLRL-PNPEIRKAILDLLFDLLR 269 (371)
T ss_pred Cc---eeeeecCCchHHHHHHHHHcC-CCHHHHHHHHHHHHHHHC
Confidence 11 000000 12468888999985 466678777766554433
No 104
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00013 Score=68.78 Aligned_cols=47 Identities=23% Similarity=0.430 Sum_probs=40.1
Q ss_pred ccCcCCcccCCC---ccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKD---PVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 10 ~~Cpi~~~~m~d---Pv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
+.|-||.|-|.+ =.++||+|.|=..||..|+.+. ...||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 699999998886 3478999999999999999875 4569999987654
No 105
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.0024 Score=62.76 Aligned_cols=189 Identities=11% Similarity=-0.021 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHH
Q 015513 110 STLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWV 189 (405)
Q Consensus 110 ~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~l 189 (405)
.++..|..+++.-..-|.-+.+...+++|+++|+.+... ...-+...++|+...-+..+..+.+.+ .|..|+.+
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peim----i~~~~t~~icn~vv~fsnL~~~fL~~~--iIdvl~~~ 481 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIM----IEFPDTIDICNKVVPFSNLGAGFLEKS--IIDVLVNL 481 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccce----eeccchhhhhheeeeccchHHHHHHhh--HHHHHHHH
Confidence 344555677665556677888899999999999865321 234566778887654445667777777 99999999
Q ss_pred HhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCC-c---hhHH
Q 015513 190 LQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMG-G---NRVK 265 (405)
Q Consensus 190 L~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~-~---n~~~ 265 (405)
+.+ .+...|.+..|+|+.+--+.++....-....-++..++++..++ ...+++..+..|+|+..+. . .+..
T Consensus 482 v~s----KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv 556 (743)
T COG5369 482 VMS----KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDV 556 (743)
T ss_pred hhc----chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc-ccccHHHHHHHHHhccccccccccccee
Confidence 998 88899999999999997665544222102234578899999888 8899999999999997632 2 2333
Q ss_pred HHhhc----chHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHh
Q 015513 266 ITEAN----AVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFRE 310 (405)
Q Consensus 266 ~v~~g----~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~ 310 (405)
+.++- .+.-|++.+... ++...+..+-+|.+++.++++...++.
T Consensus 557 ~~K~~p~~ylfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~ 604 (743)
T COG5369 557 FIKATPRRYLFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQ 604 (743)
T ss_pred EEecChHHHHHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHH
Confidence 33221 344566666665 444455668888888888877665543
No 106
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.28 E-value=0.0002 Score=66.30 Aligned_cols=52 Identities=21% Similarity=0.487 Sum_probs=41.6
Q ss_pred CCcccCcCCcccCCC---cccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCc
Q 015513 7 PQYFICPISLQIMKD---PVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLT 62 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~d---Pv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~ 62 (405)
...|.||||+..|.. -|.+ +|||.|...+|++.- ....||+|+.+|.. .+++
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~~-~DiI 166 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFTE-EDII 166 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCcccc-CCEE
Confidence 556999999999965 4434 999999999999984 13579999999986 5544
No 107
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.073 Score=49.30 Aligned_cols=216 Identities=14% Similarity=0.109 Sum_probs=134.1
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHH
Q 015513 94 QVRKLVRDLDSGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKA 173 (405)
Q Consensus 94 ~i~~lv~~l~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~ 173 (405)
-+..+.+.+...+....|+..|-+++. ++.-|+.+.+. .+..+++.+..+.. ..-.....+|.||++.+.....
T Consensus 45 ~lk~l~qL~~~~~~~~~a~~alVnlsq-~~~l~~~ll~~-~~k~l~~~~~~p~~----~lad~~cmlL~NLs~~~~~~~~ 118 (353)
T KOG2973|consen 45 LLKDLTQLLKDLDPAEPAATALVNLSQ-KEELRKKLLQD-LLKVLMDMLTDPQS----PLADLICMLLSNLSRDDDEVAA 118 (353)
T ss_pred hHHHHHHHccCcccccHHHHHHHHHHh-hHHHHHHHHHH-HHHHHHHHhcCccc----chHHHHHHHHHHhccCchHHHH
Confidence 344455555444335677788888875 45556666666 77777777764421 1256778899999998776554
Q ss_pred hhcc------cchhHHHHHHHHHhhhcCCCcH-HhHHHHHHHHHHHHhhhccchhhhcccHHH--HHHHHHHHhhcCChH
Q 015513 174 LVDH------HNQDLIGALMWVLQWENNDRHV-AVKTSAMIVLKMVLELASKGLLESTLNLDF--FKEMVKLLKENISQQ 244 (405)
Q Consensus 174 ~i~~------~g~~~i~~Lv~lL~~~~~~~~~-~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~--i~~Lv~lL~~~~~~~ 244 (405)
++.. .| .+..+....+++ .+. .--..-+.++.+|+.....+.... .... +..|+.+-. ..+.-
T Consensus 119 ll~~~~~~~~~~--lm~l~~~~~d~~---~n~~a~f~ylA~vf~nls~~~~gR~l~~--~~k~~p~~kll~ft~-~~s~v 190 (353)
T KOG2973|consen 119 LLTNLTEKKDSG--LMRLARAFCDKS---YNAYAEFHYLAPVFANLSQFEAGRKLLL--EPKRFPDQKLLPFTS-EDSQV 190 (353)
T ss_pred HHHhcccccccc--hHHHHHHHhCcc---cccccchhHHHHHHHHHhhhhhhhhHhc--chhhhhHhhhhcccc-cchhh
Confidence 4432 22 455555566652 332 223566778889988877766554 3232 222333322 21333
Q ss_pred HHHHHHHHHHHhccCCchhHHHHhh--cchHHHHHHh---------------------hc----CCCCCcHHHHHHHHHH
Q 015513 245 ATKSGLHVLLQACPMGGNRVKITEA--NAVFELIELE---------------------LT----KPEKSTTELIFNLLAQ 297 (405)
Q Consensus 245 ~~~~a~~aL~~L~~~~~n~~~~v~~--g~v~~Lv~lL---------------------~~----~~~~~~~e~a~~~L~~ 297 (405)
-+.-.+.+|.|.|....+...+.+. ...|.|+-=| .. .++..++..-+.+|..
T Consensus 191 Rr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~l 270 (353)
T KOG2973|consen 191 RRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLL 270 (353)
T ss_pred hccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHH
Confidence 3456678999999988888887763 3455543222 11 1256788999999999
Q ss_pred HhcCHhhHHHHHhcccchHHHHHHHHcc
Q 015513 298 LCSCADGRLKFREHAGAIAMVTKRLLRV 325 (405)
Q Consensus 298 L~~~~~~~~~i~~~~g~i~~Lv~~l~~~ 325 (405)
||....||+.+.. - |+.++++.+...
T Consensus 271 LcaT~~GRe~lR~-k-gvYpilRElhk~ 296 (353)
T KOG2973|consen 271 LCATRAGREVLRS-K-GVYPILRELHKW 296 (353)
T ss_pred HHhhhHhHHHHHh-c-CchHHHHHHhcC
Confidence 9999999999854 3 667777756554
No 108
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.0092 Score=55.04 Aligned_cols=187 Identities=16% Similarity=0.136 Sum_probs=123.6
Q ss_pred HHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCch
Q 015513 183 IGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGN 262 (405)
Q Consensus 183 i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n 262 (405)
+..++.+|.+ .++.++..|+.-|..+... ..+...- -+.-.++.|..|++.. .+ .+.|+.+|.|++....-
T Consensus 5 l~elv~ll~~----~sP~v~~~AV~~l~~lt~~-~~~~~~~-~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~l 75 (353)
T KOG2973|consen 5 LVELVELLHS----LSPPVRKAAVEHLLGLTGR-GLQSLSK-YSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKEEL 75 (353)
T ss_pred HHHHHHHhcc----CChHHHHHHHHHHhhcccc-chhhhcc-chhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHHH
Confidence 4467888888 8899999999999888766 2222222 2345678888898875 43 77899999999999999
Q ss_pred hHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHh-cc----cchHHHHHHHHccCh---hhhHHHH
Q 015513 263 RVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFRE-HA----GAIAMVTKRLLRVSP---ATNDRAV 334 (405)
Q Consensus 263 ~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~-~~----g~i~~Lv~~l~~~s~---~~~e~a~ 334 (405)
++.+.+. .+..++..+.+. .....+.++.+|.||+..++.-..+.. .. .++..+++.....+. ..-.+-+
T Consensus 76 ~~~ll~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA 153 (353)
T KOG2973|consen 76 RKKLLQD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLA 153 (353)
T ss_pred HHHHHHH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHH
Confidence 9998888 777777777663 567889999999999987776555432 11 456666665544433 2345666
Q ss_pred HHHHHhcccCCCHHHHHHHHhcCh--HHHHHHHHhccCcHHHHHHHHHHHHH
Q 015513 335 HILSSISKFSATYEVVLEMLSVGA--VSKLCMVTQADCEKYLKDRAKEILRL 384 (405)
Q Consensus 335 ~~L~~L~~~~~~~~~~~~~~~~G~--v~~Ll~ll~~~~~~~~k~~A~~ll~~ 384 (405)
.++.+|++... .|........ +++|+.+ .+..+..-|...+.+|++
T Consensus 154 ~vf~nls~~~~---gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN 201 (353)
T KOG2973|consen 154 PVFANLSQFEA---GRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKN 201 (353)
T ss_pred HHHHHHhhhhh---hhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHh
Confidence 77777877643 3444444332 2233222 323333344555566664
No 109
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.12 Score=50.14 Aligned_cols=243 Identities=16% Similarity=0.146 Sum_probs=160.7
Q ss_pred hHHHHHHHHHhc--chhHHHHHHHHHHHHHHhh-----H----HhHHHHHHhchHHHHHHHHHhhccCCC--chhHHHHH
Q 015513 92 KDQVRKLVRDLD--SGHLRISTLKKMEALAMEN-----E----RNRKSLEEAFVVRALVLFIITSYKGNK--TTGLEEAL 158 (405)
Q Consensus 92 ~~~i~~lv~~l~--~~~~~~~Al~~L~~l~~~~-----~----~~r~~i~~~g~v~~Lv~lL~~~~~~~~--~~~~e~A~ 158 (405)
-+++++|+..++ +.+....-+.-|+.++.++ . .--+.+++.+.++.|+.-+..-+.+.. ....+.++
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 456777777774 3477777777778887643 1 224567788999999998865443221 01257778
Q ss_pred HHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhc-cchhhhcccHHHHHHHHHHH
Q 015513 159 RILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELAS-KGLLESTLNLDFFKEMVKLL 237 (405)
Q Consensus 159 ~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~-~~~~i~~~~~g~i~~Lv~lL 237 (405)
+++-|+..-.+.....+++.| .+.-|+.-+.... .-..-+..|..+|.-+..... ++...+ ..++|..|++-+
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~--ll~WLL~rl~~k~--~f~aNk~YasEiLaillq~s~e~~~~~~--~l~GiD~lL~~l 277 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQG--LLSWLLKRLKGKA--AFDANKQYASEILAILLQNSDENRKLLG--PLDGIDVLLRQL 277 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhh--HHHHHHHHHhccc--CcchhHHHHHHHHHHHhccCchhhhhhc--CcccHHHHHhhc
Confidence 899999877777777777776 5544443232211 223346778888887766554 444444 556777777655
Q ss_pred h-----hc---CChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHh---hHH
Q 015513 238 K-----EN---ISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCAD---GRL 306 (405)
Q Consensus 238 ~-----~~---~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~---~~~ 306 (405)
. ++ ...+..++-...|..+-..+.|+..++...++....-+++. ....+..++.+|......++ +..
T Consensus 278 a~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~--Kk~sr~SalkvLd~am~g~~gt~~C~ 355 (536)
T KOG2734|consen 278 AVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE--KKVSRGSALKVLDHAMFGPEGTPNCN 355 (536)
T ss_pred chhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH--HHHhhhhHHHHHHHHHhCCCchHHHH
Confidence 2 21 12356677788888888888999999998888877777765 34557889999999887655 567
Q ss_pred HHHhcccchHHHHHHHHcc---------C-hhhhHHHHHHHHHhccc
Q 015513 307 KFREHAGAIAMVTKRLLRV---------S-PATNDRAVHILSSISKF 343 (405)
Q Consensus 307 ~i~~~~g~i~~Lv~~l~~~---------s-~~~~e~a~~~L~~L~~~ 343 (405)
++++ .+|...+.-..++. + ....|+-..+|+.+-..
T Consensus 356 kfVe-~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 356 KFVE-ILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HHHH-HHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 7766 66787777755532 1 24466777777776543
No 110
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.24 E-value=0.0037 Score=56.59 Aligned_cols=178 Identities=17% Similarity=0.100 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHHHHHhh--HHhHHHHHHh--chHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccch
Q 015513 105 GHLRISTLKKMEALAMEN--ERNRKSLEEA--FVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQ 180 (405)
Q Consensus 105 ~~~~~~Al~~L~~l~~~~--~~~r~~i~~~--g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~ 180 (405)
...+.+|+..|+.+...+ ......+.+. ..+..++..+.+.. ..+...|+.++..|+..-...-+...+
T Consensus 21 W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R----s~v~~~A~~~l~~l~~~l~~~~~~~~~--- 93 (228)
T PF12348_consen 21 WEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR----SKVSKTACQLLSDLARQLGSHFEPYAD--- 93 (228)
T ss_dssp HHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-------HHHHHHHHHHHHHHHHGGGGHHHHH---
T ss_pred HHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHhHhHHHHHH---
Confidence 488999999999999877 3333343331 44455555554432 234677888887776432111111121
Q ss_pred hHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHH-HHHHHHHHhhcCChHHHHHHHHHHHHhccC
Q 015513 181 DLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDF-FKEMVKLLKENISQQATKSGLHVLLQACPM 259 (405)
Q Consensus 181 ~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~-i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~ 259 (405)
..+|.|+..+.+ ++..+++.|..+|..+...-.. .... ++.+...+.+. ++.++..++..|..+...
T Consensus 94 ~~l~~Ll~~~~~----~~~~i~~~a~~~L~~i~~~~~~-------~~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 94 ILLPPLLKKLGD----SKKFIREAANNALDAIIESCSY-------SPKILLEILSQGLKSK-NPQVREECAEWLAIILEK 161 (228)
T ss_dssp HHHHHHHHGGG-------HHHHHHHHHHHHHHHTTS-H---------HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcc----ccHHHHHHHHHHHHHHHHHCCc-------HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHH
Confidence 278888888887 7788999999999999875431 1233 44555556666 899999999999888663
Q ss_pred Cc-hhHHHHh----hcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCH
Q 015513 260 GG-NRVKITE----ANAVFELIELELTKPEKSTTELIFNLLAQLCSCA 302 (405)
Q Consensus 260 ~~-n~~~~v~----~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~ 302 (405)
-. +...+-. ..+++.+...+.+. +.++++.|-.++..+...-
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHF 208 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHC
Confidence 32 2222211 34778888888875 8899999999999986543
No 111
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.22 E-value=0.028 Score=54.02 Aligned_cols=208 Identities=12% Similarity=0.050 Sum_probs=145.1
Q ss_pred HHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHH-HHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 183 IGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDF-FKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 183 i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~-i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
-+.++.+|.. ++.-..+.+.++|..++.....+.... +-.. ..-|-..+.++.+++....++++|..+...++
T Consensus 116 ~~~fl~ll~r----~d~~iv~~~~~Ils~la~~g~~~~~~~--e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e 189 (442)
T KOG2759|consen 116 WLSFLNLLNR----QDTFIVEMSFRILSKLACFGNCKMELS--ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE 189 (442)
T ss_pred hHHHHHHHhc----CChHHHHHHHHHHHHHHHhccccccch--HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc
Confidence 4567788887 788888889999999987665433221 2122 23344556665577889999999999999999
Q ss_pred hhHHHHhhcchHHHHHHhhc-CCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccC--hhhhHHHHHHHH
Q 015513 262 NRVKITEANAVFELIELELT-KPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVS--PATNDRAVHILS 338 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~-~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s--~~~~e~a~~~L~ 338 (405)
.|..++.+.++..|+..+.+ ..+--++-..+-.++.|.-.+...+.+ ...+.|+.|++ +++.+ +......++++.
T Consensus 190 yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~-~~~~li~~L~~-Ivk~~~KEKV~Rivlai~~ 267 (442)
T KOG2759|consen 190 YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKL-KRFDLIQDLSD-IVKESTKEKVTRIVLAIFR 267 (442)
T ss_pred hhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHH-hhccHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999953 224457788999999998776666555 55778999999 44432 355566778888
Q ss_pred HhcccCCCHHH----HHHHHhcChHHHHHHHHhcc--CcHHHHHHHHHHHHHhhcccCCCCCcchhh
Q 015513 339 SISKFSATYEV----VLEMLSVGAVSKLCMVTQAD--CEKYLKDRAKEILRLHSNVWNNSPCIQVYL 399 (405)
Q Consensus 339 ~L~~~~~~~~~----~~~~~~~G~v~~Ll~ll~~~--~~~~~k~~A~~ll~~l~~~~~~~~~~~~~~ 399 (405)
+++...++.+. ...|+..++ ++.+..|+.. .++.+.+.-..+-..|.....+-..||.|.
T Consensus 268 Nll~k~~~~~~~k~~~~~mv~~~v-~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~ 333 (442)
T KOG2759|consen 268 NLLDKGPDRETKKDIASQMVLCKV-LKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYK 333 (442)
T ss_pred HHhccCchhhHHHHHHHHHHhcCc-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 88876544333 345666554 4555555433 256677777777777777666666776664
No 112
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.20 E-value=0.046 Score=53.90 Aligned_cols=203 Identities=12% Similarity=-0.063 Sum_probs=107.8
Q ss_pred hHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHH
Q 015513 134 VVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVL 213 (405)
Q Consensus 134 ~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~ 213 (405)
++..|+..|.+.. ..++..++.+|..+-. .. +.+.|+.+|.+ .++.++..++.++..-
T Consensus 87 ~~~~L~~~L~d~~----~~vr~aaa~ALg~i~~-----------~~--a~~~L~~~L~~----~~p~vR~aal~al~~r- 144 (410)
T TIGR02270 87 DLRSVLAVLQAGP----EGLCAGIQAALGWLGG-----------RQ--AEPWLEPLLAA----SEPPGRAIGLAALGAH- 144 (410)
T ss_pred HHHHHHHHhcCCC----HHHHHHHHHHHhcCCc-----------hH--HHHHHHHHhcC----CChHHHHHHHHHHHhh-
Confidence 3777777776432 1246666667764321 12 56667777776 6777776666555441
Q ss_pred hhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHH
Q 015513 214 ELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFN 293 (405)
Q Consensus 214 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~ 293 (405)
. ....+.|..+|++. ++.++..|+++|..+-. ..++|.|...+.+. ++.++..|+.
T Consensus 145 ---------~---~~~~~~L~~~L~d~-d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~-~~~VR~aA~~ 200 (410)
T TIGR02270 145 ---------R---HDPGPALEAALTHE-DALVRAAALRALGELPR----------RLSESTLRLYLRDS-DPEVRFAALE 200 (410)
T ss_pred ---------c---cChHHHHHHHhcCC-CHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCC-CHHHHHHHHH
Confidence 1 12346777777766 77888888888766543 24555566666654 6777777777
Q ss_pred HHHHHhcCHhhHHHHHh--cccchHHHHH--HHHccChhhhHHHHHHHHHhcccCCCH-HHH---HHHHhcChHHHHHHH
Q 015513 294 LLAQLCSCADGRLKFRE--HAGAIAMVTK--RLLRVSPATNDRAVHILSSISKFSATY-EVV---LEMLSVGAVSKLCMV 365 (405)
Q Consensus 294 ~L~~L~~~~~~~~~i~~--~~g~i~~Lv~--~l~~~s~~~~e~a~~~L~~L~~~~~~~-~~~---~~~~~~G~v~~Ll~l 365 (405)
+|..+- .++....+.. ...|.+.-.. .++... ....++.-|..+....... ... -.+....+++.|+..
T Consensus 201 al~~lG-~~~A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~~a~~~L~~ll~d~~vr~~a~~AlG~lg~p~av~~L~~~ 277 (410)
T TIGR02270 201 AGLLAG-SRLAWGVCRRFQVLEGGPHRQRLLVLLAVA--GGPDAQAWLRELLQAAATRREALRAVGLVGDVEAAPWCLEA 277 (410)
T ss_pred HHHHcC-CHhHHHHHHHHHhccCccHHHHHHHHHHhC--CchhHHHHHHHHhcChhhHHHHHHHHHHcCCcchHHHHHHH
Confidence 776662 2322211110 0111111101 011100 1113333333333321100 011 111123467888888
Q ss_pred HhccCcHHHHHHHHHHHHHhhcc
Q 015513 366 TQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 366 l~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
+. .+.+++.|.+.++.+...
T Consensus 278 l~---d~~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 278 MR---EPPWARLAGEAFSLITGM 297 (410)
T ss_pred hc---CcHHHHHHHHHHHHhhCC
Confidence 76 345999999999999883
No 113
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.00029 Score=62.03 Aligned_cols=54 Identities=24% Similarity=0.533 Sum_probs=45.0
Q ss_pred CCcccCcCCcccCCCcc----ccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 015513 7 PQYFICPISLQIMKDPV----TAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTS 63 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv----~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~ 63 (405)
...|+||+|.+.+.+-+ +-+|||.|+..|.++.+.. ...||+|+.++.. .++++
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~--D~v~pv~d~plkd-rdiI~ 276 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK--DMVDPVTDKPLKD-RDIIG 276 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc--cccccCCCCcCcc-cceEe
Confidence 35699999999999943 5589999999999999853 5789999999986 66655
No 114
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.16 E-value=0.0075 Score=54.57 Aligned_cols=186 Identities=12% Similarity=0.081 Sum_probs=105.6
Q ss_pred CcHHhHHHHHHHHHHHHhhh---ccchhhhccc-HHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcch
Q 015513 197 RHVAVKTSAMIVLKMVLELA---SKGLLESTLN-LDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAV 272 (405)
Q Consensus 197 ~~~~~~~~A~~~L~~L~~~~---~~~~~i~~~~-~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v 272 (405)
.+.+.+..|+.-|..+.... +....+. .. ...+..+...+.+. ...+.+.|+.++..|+..-.+.-.-.-...+
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~-~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFV-ECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHH-HHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHH-HHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 78899999999999998766 1122211 00 02233555555555 5578899999999998754433332234588
Q ss_pred HHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCC--CHHHH
Q 015513 273 FELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSA--TYEVV 350 (405)
Q Consensus 273 ~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~--~~~~~ 350 (405)
|.|++.+.++ ...+++.|..+|..++..-..-..++ ++.+...+...++..+..++..+..+....+ .....
T Consensus 97 ~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 97 PPLLKKLGDS-KKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 9999999875 56788999999999987533111110 1222222223456777888877777765544 11111
Q ss_pred HHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccCC
Q 015513 351 LEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWNN 391 (405)
Q Consensus 351 ~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~~ 391 (405)
....-...++.+...+. |.++.+|+.|..++..+.++|++
T Consensus 171 ~~~~~~~l~~~l~~~l~-D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLS-DADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp -HHHHHHHHHHHHHHHT-SS-HHHHHHHHHHHHHHHHHH-H
T ss_pred ccchHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHCCH
Confidence 11101234555666665 88999999999999999887753
No 115
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.15 E-value=0.00016 Score=61.37 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=37.8
Q ss_pred ccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPL 55 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~ 55 (405)
|.|-||.+-++.||+..|||.||..|--+-... ...|-+|+...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k--g~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK--GDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc--CCcceecchhh
Confidence 999999999999999999999999996655543 36899998765
No 116
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=97.13 E-value=0.00045 Score=61.60 Aligned_cols=64 Identities=28% Similarity=0.370 Sum_probs=45.6
Q ss_pred ccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCC--C-CCCCCCcccHHHHHHHHH
Q 015513 10 FICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQP--L-PRDSGLTSNHTLRRLIQA 73 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~--~-~~~~~~~~n~~l~~~I~~ 73 (405)
++|||+......||+. .|||.|+|..|+..........||+-+.+ . ..+..+.+...+++-|++
T Consensus 177 ~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~ 244 (262)
T KOG2979|consen 177 NRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQ 244 (262)
T ss_pred ccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHHH
Confidence 6999999999999988 69999999999999854324569995544 1 112444454455555443
No 117
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.12 E-value=0.00015 Score=68.66 Aligned_cols=35 Identities=11% Similarity=0.258 Sum_probs=31.5
Q ss_pred CCcccCcCCcccCCCccccCCCCcccHHHHHHHHh
Q 015513 7 PQYFICPISLQIMKDPVTAITGISYDRESIEKWLK 41 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~ 41 (405)
++++.||||+..|+||++++|||+.||.|-..-..
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 67899999999999999999999999999775543
No 118
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.12 E-value=0.017 Score=56.07 Aligned_cols=235 Identities=10% Similarity=0.037 Sum_probs=142.0
Q ss_pred hHHHHHHHHHhcch----hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCC
Q 015513 92 KDQVRKLVRDLDSG----HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSP 167 (405)
Q Consensus 92 ~~~i~~lv~~l~~~----~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~ 167 (405)
..++.-|++.+..+ +++.+|.+.|..+. ..+|++.++.-| .-.+..+-+.. ..++.....+++|.++-++
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~---e~~e~aR~~~~il~~mFKH 252 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKER---EPVELARSVAGILEHMFKH 252 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhc---CcHHHHHHHHHHHHHHhhh
Confidence 34556677777543 66889999887664 357888888765 33333333321 1134467778899999888
Q ss_pred chhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhc--cchhhhcccHHHHHHHHHHHhhcCChHH
Q 015513 168 SNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELAS--KGLLESTLNLDFFKEMVKLLKENISQQA 245 (405)
Q Consensus 168 ~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~--~~~~i~~~~~g~i~~Lv~lL~~~~~~~~ 245 (405)
+++....+++.| ++..++-..+. .++....+++.+|.|++-+.. .++.++ +-.+-+=|.-|-.+. +.-.
T Consensus 253 Seet~~~Lvaa~--~lD~vl~~~rR----t~P~lLRH~ALAL~N~~L~~~~a~qrrmv--eKr~~EWLF~LA~sk-Del~ 323 (832)
T KOG3678|consen 253 SEETCQRLVAAG--GLDAVLYWCRR----TDPALLRHCALALGNCALHGGQAVQRRMV--EKRAAEWLFPLAFSK-DELL 323 (832)
T ss_pred hHHHHHHHHhhc--ccchheeeccc----CCHHHHHHHHHHhhhhhhhchhHHHHHHH--Hhhhhhhhhhhhcch-HHHH
Confidence 777666666677 78877766666 789999999999999986542 333333 334444455555554 6667
Q ss_pred HHHHHHHHHHhccCCchhHHHHhhc---chHHHHHHhhcCC-------------------------CCCcHHHHHHHHHH
Q 015513 246 TKSGLHVLLQACPMGGNRVKITEAN---AVFELIELELTKP-------------------------EKSTTELIFNLLAQ 297 (405)
Q Consensus 246 ~~~a~~aL~~L~~~~~n~~~~v~~g---~v~~Lv~lL~~~~-------------------------~~~~~e~a~~~L~~ 297 (405)
+-.|.-|+.-|+++.+--..+-+.| .|.+|+..+..+. +......++++.+-
T Consensus 324 R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 324 RLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred HHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 7788888888888776554444444 4445555443210 01112223333322
Q ss_pred Hh----cCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhc
Q 015513 298 LC----SCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSIS 341 (405)
Q Consensus 298 L~----~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~ 341 (405)
.+ ....|+.++..+-|+|+.|-+..-+........|..+|..|.
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviG 451 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIG 451 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence 22 133466677777789999887332222233445556665543
No 119
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00038 Score=64.86 Aligned_cols=47 Identities=23% Similarity=0.533 Sum_probs=39.2
Q ss_pred CCcccCcCCcccCCCc-------------cccCCCCcccHHHHHHHHhcCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDP-------------VTAITGISYDRESIEKWLKTAKDTTCPVTKQPL 55 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dP-------------v~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~ 55 (405)
.++-.|-||++-|-.| =-+||||.+--+|+..|.++. .+||+||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq--QTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ--QTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc--cCCCcccCcc
Confidence 3456899999885443 578999999999999999874 7999999984
No 120
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.03 E-value=0.0039 Score=47.07 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=66.0
Q ss_pred HHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHh
Q 015513 135 VRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLE 214 (405)
Q Consensus 135 v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~ 214 (405)
|+.|++.|.+ +.+...+..|+.+|..+. ++ . +++.|+.++++ .++.++..|+.+|..+.
T Consensus 1 i~~L~~~l~~---~~~~~vr~~a~~~L~~~~--~~---------~--~~~~L~~~l~d----~~~~vr~~a~~aL~~i~- 59 (88)
T PF13646_consen 1 IPALLQLLQN---DPDPQVRAEAARALGELG--DP---------E--AIPALIELLKD----EDPMVRRAAARALGRIG- 59 (88)
T ss_dssp HHHHHHHHHT---SSSHHHHHHHHHHHHCCT--HH---------H--HHHHHHHHHTS----SSHHHHHHHHHHHHCCH-
T ss_pred CHHHHHHHhc---CCCHHHHHHHHHHHHHcC--CH---------h--HHHHHHHHHcC----CCHHHHHHHHHHHHHhC-
Confidence 5788888843 223456888888888542 11 2 89999999987 89999999999999873
Q ss_pred hhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 015513 215 LASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLL 254 (405)
Q Consensus 215 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~ 254 (405)
+..+++.|.+++.+..+..++..|+.+|.
T Consensus 60 -----------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -----------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23568899999988646667888888873
No 121
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.089 Score=53.46 Aligned_cols=275 Identities=12% Similarity=0.070 Sum_probs=169.3
Q ss_pred hHHHHHHHHHhcch--hHHHHHHHHHHHHHHhhHHhHHH--HHH--hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcC
Q 015513 92 KDQVRKLVRDLDSG--HLRISTLKKMEALAMENERNRKS--LEE--AFVVRALVLFIITSYKGNKTTGLEEALRILSLVW 165 (405)
Q Consensus 92 ~~~i~~lv~~l~~~--~~~~~Al~~L~~l~~~~~~~r~~--i~~--~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~ 165 (405)
++.++.|...+.++ ..+.-|..+|..+++++.+.-+. .-+ .-.+|.++.+.+++ +++.+..|+..+-..-
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~----spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP----SPKIRSHAVGCVNQFI 202 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC----ChhHHHHHHhhhhhee
Confidence 56677788877654 56777888888888766543221 101 13467777777654 3455888888776544
Q ss_pred CCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHH
Q 015513 166 SPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQA 245 (405)
Q Consensus 166 ~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~ 245 (405)
... .+.+...-+ ..++.+..+-. +.++++|.+.+.+|..|......+..-- -.+.++-.+..-++. +..+
T Consensus 203 ~~~--~qal~~~iD-~Fle~lFalan----D~~~eVRk~vC~alv~Llevr~dkl~ph--l~~IveyML~~tqd~-dE~V 272 (885)
T KOG2023|consen 203 IIQ--TQALYVHID-KFLEILFALAN----DEDPEVRKNVCRALVFLLEVRPDKLVPH--LDNIVEYMLQRTQDV-DENV 272 (885)
T ss_pred ecC--cHHHHHHHH-HHHHHHHHHcc----CCCHHHHHHHHHHHHHHHHhcHHhcccc--hHHHHHHHHHHccCc-chhH
Confidence 332 233433222 24444444443 4899999999999999987665444322 246777777777776 7788
Q ss_pred HHHHHHHHHHhccCCchhHHHHh--hcchHHHHHHh----------hcCCC-----------------------------
Q 015513 246 TKSGLHVLLQACPMGGNRVKITE--ANAVFELIELE----------LTKPE----------------------------- 284 (405)
Q Consensus 246 ~~~a~~aL~~L~~~~~n~~~~v~--~g~v~~Lv~lL----------~~~~~----------------------------- 284 (405)
.-.|.+....++..+--+..+.. ...||.|++-+ .+..+
T Consensus 273 ALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~ 352 (885)
T KOG2023|consen 273 ALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADD 352 (885)
T ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccc
Confidence 88899999999988755554443 35677766432 20000
Q ss_pred ----------------CCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHH
Q 015513 285 ----------------KSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYE 348 (405)
Q Consensus 285 ----------------~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~ 348 (405)
=.++..++++|..|+.. -+..++.. .+|.|-+.|....=..+|.++-+|.+++.+
T Consensus 353 eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL~~--l~PlLk~~L~~~~W~vrEagvLAlGAIAEG----- 423 (885)
T KOG2023|consen 353 EDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV--FGDELLPI--LLPLLKEHLSSEEWKVREAGVLALGAIAEG----- 423 (885)
T ss_pred ccccccccccccccccccHhhccHHHHHHHHHh--hHHHHHHH--HHHHHHHHcCcchhhhhhhhHHHHHHHHHH-----
Confidence 13456666777766532 23333331 334444433222226789999999999854
Q ss_pred HHHHHHhcC--hHHHHHHHHhccCcHHHHHHHHHHHHHhhcccC
Q 015513 349 VVLEMLSVG--AVSKLCMVTQADCEKYLKDRAKEILRLHSNVWN 390 (405)
Q Consensus 349 ~~~~~~~~G--~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~ 390 (405)
+.+-|+..= .++.|+.+|. +-.+-+|..+.+.|...+...-
T Consensus 424 cM~g~~p~LpeLip~l~~~L~-DKkplVRsITCWTLsRys~wv~ 466 (885)
T KOG2023|consen 424 CMQGFVPHLPELIPFLLSLLD-DKKPLVRSITCWTLSRYSKWVV 466 (885)
T ss_pred HhhhcccchHHHHHHHHHHhc-cCccceeeeeeeeHhhhhhhHh
Confidence 444444422 5777788886 5577788888888887776543
No 122
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.00046 Score=60.80 Aligned_cols=38 Identities=29% Similarity=0.597 Sum_probs=33.5
Q ss_pred CCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhc
Q 015513 5 EVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKT 42 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~ 42 (405)
.|-+.-+|.+|.+.++|||+.+.||.|||.||.+++-.
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 34555699999999999999999999999999999754
No 123
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.98 E-value=0.077 Score=53.13 Aligned_cols=270 Identities=14% Similarity=0.074 Sum_probs=160.5
Q ss_pred HHHHHHHHHHhhHHhHHHHHHhchHHHHHHHH--Hh----hccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHH
Q 015513 111 TLKKMEALAMENERNRKSLEEAFVVRALVLFI--IT----SYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIG 184 (405)
Q Consensus 111 Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL--~~----~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~ 184 (405)
||.+||.+.+ ++.+-+.+....++..|.++= .. .....+.....+|+.+|+|+...++..|....+.| ..+
T Consensus 1 ~L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~--~~~ 77 (446)
T PF10165_consen 1 CLETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLG--LAE 77 (446)
T ss_pred CHHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcC--cHH
Confidence 3567777775 444556666666677766653 01 11122345689999999999888888999999888 888
Q ss_pred HHHHHHhhhcC-CCcHHhHHHHHHHHHHHHhhh-ccchhhhcccHHHHHHHHHHHhhc----------------CChHHH
Q 015513 185 ALMWVLQWENN-DRHVAVKTSAMIVLKMVLELA-SKGLLESTLNLDFFKEMVKLLKEN----------------ISQQAT 246 (405)
Q Consensus 185 ~Lv~lL~~~~~-~~~~~~~~~A~~~L~~L~~~~-~~~~~i~~~~~g~i~~Lv~lL~~~----------------~~~~~~ 246 (405)
.++..|+.... ..+.+......++|+-++... +.+..+. .+.+++..|+..|... .+....
T Consensus 78 ~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~-~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l 156 (446)
T PF10165_consen 78 KLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLI-EEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEAL 156 (446)
T ss_pred HHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHH-HHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHH
Confidence 99999987210 016788888999998887543 3343444 4557777777766321 133456
Q ss_pred HHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcC--------CCCCcHHHHHHHHHHHhcC-Hhh-------HHHH--
Q 015513 247 KSGLHVLLQACPMGGNRVKITEANAVFELIELELTK--------PEKSTTELIFNLLAQLCSC-ADG-------RLKF-- 308 (405)
Q Consensus 247 ~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~--------~~~~~~e~a~~~L~~L~~~-~~~-------~~~i-- 308 (405)
..++++++|+.........--..+.++.|+.+|..- +-.....+++.+|.++-.. .+. ...+
T Consensus 157 ~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~ 236 (446)
T PF10165_consen 157 SEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFP 236 (446)
T ss_pred HHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccC
Confidence 788899999987543332223355667776665421 1234566777888777321 111 0000
Q ss_pred -HhcccchHHHHHHHHcc----Ch----hhhHHHHHHHHHhcccCCCHHHHHHHHh----------------cChHHHHH
Q 015513 309 -REHAGAIAMVTKRLLRV----SP----ATNDRAVHILSSISKFSATYEVVLEMLS----------------VGAVSKLC 363 (405)
Q Consensus 309 -~~~~g~i~~Lv~~l~~~----s~----~~~e~a~~~L~~L~~~~~~~~~~~~~~~----------------~G~v~~Ll 363 (405)
......+..|++.|... .. ..-..-+.+|..++..+ ...++.+.. ...-.+|+
T Consensus 237 ~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~--~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLl 314 (446)
T PF10165_consen 237 EGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA--REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLL 314 (446)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc--HHHHHHHHHHhCCChhhcccCCCCCcchHHHHH
Confidence 01123455555543221 11 11223345555555543 234444443 23567899
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhc
Q 015513 364 MVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 364 ~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
.++.+.. +.+|+.++++|-.+.+
T Consensus 315 rLmt~~~-~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 315 RLMTSPD-PQLKDAVAELLFVLCK 337 (446)
T ss_pred HHhCCCC-chHHHHHHHHHHHHHh
Confidence 9998644 8899999998865554
No 124
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.84 E-value=0.12 Score=49.85 Aligned_cols=224 Identities=12% Similarity=0.079 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHH
Q 015513 106 HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGA 185 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~ 185 (405)
+...-+.++|..+.. -++.|..++.++++..++..|.+. ..+.+.+-..+-++..|+.+.. ..+.+...+ .|+.
T Consensus 172 ~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~--~~~~QlQYqsifciWlLtFn~~-~ae~~~~~~--li~~ 245 (442)
T KOG2759|consen 172 DYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILAST--KCGFQLQYQSIFCIWLLTFNPH-AAEKLKRFD--LIQD 245 (442)
T ss_pred chHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhcc--CcchhHHHHHHHHHHHhhcCHH-HHHHHhhcc--HHHH
Confidence 555667888888876 467799999999999999999632 3345778888888888887754 445555555 9999
Q ss_pred HHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhc---cch---hhhcccHHHHHHHHHHHhhc-C-ChHHHHHHHH------
Q 015513 186 LMWVLQWENNDRHVAVKTSAMIVLKMVLELAS---KGL---LESTLNLDFFKEMVKLLKEN-I-SQQATKSGLH------ 251 (405)
Q Consensus 186 Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~---~~~---~i~~~~~g~i~~Lv~lL~~~-~-~~~~~~~a~~------ 251 (405)
|..+++.. ....+-.-.+.++.|+....+ .+. ..+ + .+.++.-++.|... . |++.....-.
T Consensus 246 L~~Ivk~~---~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~m-v-~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~ 320 (442)
T KOG2759|consen 246 LSDIVKES---TKEKVTRIVLAIFRNLLDKGPDRETKKDIASQM-V-LCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLK 320 (442)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHH-H-hcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999972 334455667778888876552 112 112 1 23455555666543 2 3332221111
Q ss_pred -HHHHhccCC------------------------chhHHHHh--hcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc-CHh
Q 015513 252 -VLLQACPMG------------------------GNRVKITE--ANAVFELIELELTKPEKSTTELIFNLLAQLCS-CAD 303 (405)
Q Consensus 252 -aL~~L~~~~------------------------~n~~~~v~--~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~-~~~ 303 (405)
-...||+.+ +|...+-+ ...+..|+++|....|+.+-.-|+.=+....+ .++
T Consensus 321 ~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~ 400 (442)
T KOG2759|consen 321 NSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE 400 (442)
T ss_pred HHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch
Confidence 112222221 25556654 45889999999987567777788888888776 578
Q ss_pred hHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhc
Q 015513 304 GRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSIS 341 (405)
Q Consensus 304 ~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~ 341 (405)
|+..+ +.-||=..++++|-...+..+-+|+.++..|-
T Consensus 401 gk~vv-~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 401 GKAVV-EKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HhHHH-HHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 88776 45788899999555445677777777665543
No 125
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.79 E-value=0.17 Score=50.00 Aligned_cols=118 Identities=13% Similarity=-0.007 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
++..|+..|.. .+..++..++..|..+ . ..+..+.|+.+|++. ++.++..++.++..
T Consensus 87 ~~~~L~~~L~d----~~~~vr~aaa~ALg~i----------~--~~~a~~~L~~~L~~~-~p~vR~aal~al~~------ 143 (410)
T TIGR02270 87 DLRSVLAVLQA----GPEGLCAGIQAALGWL----------G--GRQAEPWLEPLLAAS-EPPGRAIGLAALGA------ 143 (410)
T ss_pred HHHHHHHHhcC----CCHHHHHHHHHHHhcC----------C--chHHHHHHHHHhcCC-ChHHHHHHHHHHHh------
Confidence 48888999987 7777888888888753 2 457788999999887 88999888877655
Q ss_pred hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHH
Q 015513 262 NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSS 339 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~ 339 (405)
......++|+.+|.+. +..++..|+.+|..|.. ...++.|...+...++.++..|+.++..
T Consensus 144 -----r~~~~~~~L~~~L~d~-d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 144 -----HRHDPGPALEAALTHE-DALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLL 204 (410)
T ss_pred -----hccChHHHHHHHhcCC-CHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1233567899999874 88899999999988742 2345555554333344555555555433
No 126
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.03 Score=59.46 Aligned_cols=139 Identities=12% Similarity=0.088 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHhcc-CCchhHHHHh----hcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHH
Q 015513 244 QATKSGLHVLLQACP-MGGNRVKITE----ANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMV 318 (405)
Q Consensus 244 ~~~~~a~~aL~~L~~-~~~n~~~~v~----~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~L 318 (405)
+-.+.++.||.|+.+ +++-...+.. -|-++.+..+|....+..++..|+.++..+....+.-..++. .|.+-.|
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~-~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLAT-CNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHh-hhHHHHH
Confidence 356788999999876 6654333322 488899999998866778999999999999887777777655 4577777
Q ss_pred HHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 319 TKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 319 v~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
+. |+...+..++.+..+|++|++. .+...++.+.|++..++.++-...++..|..|+++|.-+..
T Consensus 1819 L~-lLHS~PS~R~~vL~vLYAL~S~---~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1819 LT-LLHSQPSMRARVLDVLYALSSN---GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HH-HHhcChHHHHHHHHHHHHHhcC---cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 77 5566788899999999999864 35888999999999999999877789999999999886654
No 127
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.78 E-value=0.00041 Score=66.36 Aligned_cols=42 Identities=26% Similarity=0.623 Sum_probs=35.9
Q ss_pred cCcCCcccCCCcc----ccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 11 ICPISLQIMKDPV----TAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 11 ~Cpi~~~~m~dPv----~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
+||+|++-|.+-| ++.|.|+|--.|+.+||. .+||+||.-..
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~----~scpvcR~~q~ 222 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD----SSCPVCRYCQS 222 (493)
T ss_pred CcchhHhhcCccccceeeeecccccchHHHhhccc----CcChhhhhhcC
Confidence 8999999999977 457999999999999984 47999986443
No 128
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.73 E-value=0.035 Score=46.77 Aligned_cols=128 Identities=9% Similarity=0.089 Sum_probs=96.9
Q ss_pred cHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCC-CCCcHHHHHHHHHHHh
Q 015513 226 NLDFFKEMVKLLKENIS-----QQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKP-EKSTTELIFNLLAQLC 299 (405)
Q Consensus 226 ~~g~i~~Lv~lL~~~~~-----~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~-~~~~~e~a~~~L~~L~ 299 (405)
+.||+..|++++.++.. .+....++.++..|-.+.-.-....+...|.-.+..+.... +..+...|+++|.+++
T Consensus 9 ~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~V 88 (160)
T PF11841_consen 9 SRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIV 88 (160)
T ss_pred hccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHH
Confidence 45889999999998732 36667788888888776553445666677888888887643 6789999999999999
Q ss_pred cCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHH
Q 015513 300 SCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEML 354 (405)
Q Consensus 300 ~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~ 354 (405)
.++......+..+=.++.|+..|...+...+.++++.+.+|...+++. -+++|.
T Consensus 89 l~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~-~r~~i~ 142 (160)
T PF11841_consen 89 LNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS-KRKEIA 142 (160)
T ss_pred hCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH-HHHHHH
Confidence 877765555555668899999777767788999999999998876653 444443
No 129
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.72 E-value=0.0019 Score=44.30 Aligned_cols=55 Identities=13% Similarity=0.015 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHH
Q 015513 243 QQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQL 298 (405)
Q Consensus 243 ~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L 298 (405)
+.++..|+++|.+++........-....++|.|+.+|.+. +..++..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 4689999999999887666555555678999999999875 668999999999875
No 130
>PTZ00429 beta-adaptin; Provisional
Probab=96.71 E-value=0.86 Score=48.51 Aligned_cols=148 Identities=11% Similarity=0.063 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHh
Q 015513 135 VRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLE 214 (405)
Q Consensus 135 v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~ 214 (405)
++.++..++....+.++-++..|+.++..+-..++ +.+.+.+ .++.|..+|.. .++.+..+|+.+|..+..
T Consensus 138 ~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~--~~~~L~~LL~D----~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 138 LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQD--FKKDLVELLND----NNPVVASNAAAIVCEVND 208 (746)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccc--hHHHHHHHhcC----CCccHHHHHHHHHHHHHH
Confidence 33444433333334445568888887777754443 3444555 88899998887 899999999999999976
Q ss_pred hhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHH
Q 015513 215 LASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNL 294 (405)
Q Consensus 215 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~ 294 (405)
...... . ...+.+..|+..|.+. ++-.+-..+.+|.... +.+.... ...+..+...|++. +..+.-.|+.+
T Consensus 209 ~~~~~l--~-l~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~y~--P~~~~e~--~~il~~l~~~Lq~~-N~AVVl~Aik~ 279 (746)
T PTZ00429 209 YGSEKI--E-SSNEWVNRLVYHLPEC-NEWGQLYILELLAAQR--PSDKESA--ETLLTRVLPRMSHQ-NPAVVMGAIKV 279 (746)
T ss_pred hCchhh--H-HHHHHHHHHHHHhhcC-ChHHHHHHHHHHHhcC--CCCcHHH--HHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 543322 2 2346666677766654 4445555555553322 2221111 23455566666654 55667777777
Q ss_pred HHHHhc
Q 015513 295 LAQLCS 300 (405)
Q Consensus 295 L~~L~~ 300 (405)
+.++..
T Consensus 280 il~l~~ 285 (746)
T PTZ00429 280 VANLAS 285 (746)
T ss_pred HHHhcC
Confidence 777754
No 131
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.64 E-value=0.0032 Score=39.97 Aligned_cols=38 Identities=24% Similarity=0.121 Sum_probs=34.2
Q ss_pred hhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHH
Q 015513 170 ENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVL 213 (405)
Q Consensus 170 ~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~ 213 (405)
+++..+.+.| +++.|+.++.+ ++.+++..|+++|.+|+
T Consensus 3 ~~~~~i~~~g--~i~~L~~ll~~----~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAG--GLPALVELLKS----EDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCC--CHHHHHHHHcC----CCHHHHHHHHHHHHHHc
Confidence 4677888888 99999999997 89999999999999986
No 132
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.60 E-value=0.91 Score=45.51 Aligned_cols=235 Identities=12% Similarity=0.062 Sum_probs=141.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccC-CCchhHHHHHHHHHhcCCCchhhHHhhc-ccchhH
Q 015513 105 GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKG-NKTTGLEEALRILSLVWSPSNENKALVD-HHNQDL 182 (405)
Q Consensus 105 ~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~-~~~~~~e~A~~~L~~L~~~~~~~~~~i~-~~g~~~ 182 (405)
.....+|+++|.|+.-.++..|..+++.|..+.++..|+..... ...+..-....+|..++....+.+..+. +.+ +
T Consensus 46 ~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~--~ 123 (446)
T PF10165_consen 46 PDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH--G 123 (446)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh--h
Confidence 47788999999999999999999999999999999999876322 1223356677788777765555554544 444 7
Q ss_pred HHHHHHHHhhhc-------CC------CcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhc--------C
Q 015513 183 IGALMWVLQWEN-------ND------RHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKEN--------I 241 (405)
Q Consensus 183 i~~Lv~lL~~~~-------~~------~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~--------~ 241 (405)
+..++..|.... +. .+.+....+..+++|+.........- ...+.++.|+.+|..- .
T Consensus 124 ~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~--~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 124 VELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPE--EFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred HHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccch--hhhHHHHHHHHHHHHHhccCCCCCc
Confidence 777776665321 00 13444567778888887654433321 1345666666665421 1
Q ss_pred ChHHHHHHHHHHHHhccCC-ch-------hH----HHHhhcchHHHHHHhhcC----CCC---CcHHHHHHHHHHHhcCH
Q 015513 242 SQQATKSGLHVLLQACPMG-GN-------RV----KITEANAVFELIELELTK----PEK---STTELIFNLLAQLCSCA 302 (405)
Q Consensus 242 ~~~~~~~a~~aL~~L~~~~-~n-------~~----~~v~~g~v~~Lv~lL~~~----~~~---~~~e~a~~~L~~L~~~~ 302 (405)
......++..+|.|+-... +. .. ......++..|+.+|... .+. ....-.+.+|.+++...
T Consensus 202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~ 281 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA 281 (446)
T ss_pred chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence 2355677778888773210 00 00 112345677777777542 111 23344566777777653
Q ss_pred h-hHHHHHh---------------cccchHHHHHHHHccChhhhHHHHHHHHHhccc
Q 015513 303 D-GRLKFRE---------------HAGAIAMVTKRLLRVSPATNDRAVHILSSISKF 343 (405)
Q Consensus 303 ~-~~~~i~~---------------~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~ 343 (405)
+ .|..+.. ...--..|++++.......++.+...|+.||+.
T Consensus 282 ~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~ 338 (446)
T PF10165_consen 282 REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKE 338 (446)
T ss_pred HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhh
Confidence 3 3333321 112224566644433467788888999999864
No 133
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.0014 Score=58.12 Aligned_cols=54 Identities=19% Similarity=0.358 Sum_probs=42.1
Q ss_pred CCcccCcCCcccCCCc----cccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccc
Q 015513 7 PQYFICPISLQIMKDP----VTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSN 64 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dP----v~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n 64 (405)
...|+|||++-.|.+- ++.+|||.|.-.++++.. ..+|++|+..+...+.++.|
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik----as~C~~C~a~y~~~dvIvlN 166 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK----ASVCHVCGAAYQEDDVIVLN 166 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh----hccccccCCcccccCeEeeC
Confidence 3459999999999983 355999999999988774 46899999999763333334
No 134
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.56 E-value=0.2 Score=45.04 Aligned_cols=155 Identities=14% Similarity=0.079 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCc-hhHHHHHHHHHhcCCCc-hhhHHhhcccchhHH
Q 015513 106 HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKT-TGLEEALRILSLVWSPS-NENKALVDHHNQDLI 183 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~-~~~e~A~~~L~~L~~~~-~~~~~~i~~~g~~~i 183 (405)
....+|+.-|+-++. +++.|..+.++..=--|-.+|...+.+... -.+-.+++++..|.+.+ .+.-..+...+ .|
T Consensus 94 nRVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~Te--IV 170 (293)
T KOG3036|consen 94 NRVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTE--IV 170 (293)
T ss_pred chHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhh--hH
Confidence 556788888887775 677888999988777778888654433322 24667889999887644 34556666676 99
Q ss_pred HHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhccc-------HHHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 015513 184 GALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLN-------LDFFKEMVKLLKENISQQATKSGLHVLLQA 256 (405)
Q Consensus 184 ~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~-------~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 256 (405)
|..++.+.+ |+...+.-|+.++..+..++.+-.-+. .. .-.+..+|.-|.+..++...+++.++..+|
T Consensus 171 PlCLrime~----GSelSKtvA~fIlqKIlldD~GL~YiC-qt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrL 245 (293)
T KOG3036|consen 171 PLCLRIMES----GSELSKTVATFILQKILLDDVGLYYIC-QTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRL 245 (293)
T ss_pred HHHHHHHhc----ccHHHHHHHHHHHHHHhhccccHHHHH-HhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 999999998 899999999999998877665433222 11 123334444343434899999999999999
Q ss_pred ccCCchhHHHHh
Q 015513 257 CPMGGNRVKITE 268 (405)
Q Consensus 257 ~~~~~n~~~~v~ 268 (405)
+.++..|..+..
T Consensus 246 sdnprar~aL~~ 257 (293)
T KOG3036|consen 246 SDNPRARAALRS 257 (293)
T ss_pred cCCHHHHHHHHh
Confidence 999887776643
No 135
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.55 E-value=0.16 Score=48.75 Aligned_cols=155 Identities=15% Similarity=0.081 Sum_probs=96.6
Q ss_pred chHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHH
Q 015513 133 FVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMV 212 (405)
Q Consensus 133 g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L 212 (405)
-.++.+++++.+.+ ...+..|...|..+.. . .+++.+..++.. .+..++..|+.+|..+
T Consensus 43 ~~~~~~~~~l~~~~----~~vr~~aa~~l~~~~~-----------~--~av~~l~~~l~d----~~~~vr~~a~~aLg~~ 101 (335)
T COG1413 43 EAADELLKLLEDED----LLVRLSAAVALGELGS-----------E--EAVPLLRELLSD----EDPRVRDAAADALGEL 101 (335)
T ss_pred hhHHHHHHHHcCCC----HHHHHHHHHHHhhhch-----------H--HHHHHHHHHhcC----CCHHHHHHHHHHHHcc
Confidence 46777778777541 2336666666543321 1 278888999987 7888888888866665
Q ss_pred HhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCC-------
Q 015513 213 LELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEK------- 285 (405)
Q Consensus 213 ~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~------- 285 (405)
- ....+++|+.+|....+..++..++.+|..+-.. .++.+|++.+.+. ..
T Consensus 102 ~------------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~-~~~~a~~~~ 158 (335)
T COG1413 102 G------------DPEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDE-DSGSAAAAL 158 (335)
T ss_pred C------------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccc-hhhhhhhhc
Confidence 1 3456888999998533888999999998776542 2277788887664 21
Q ss_pred -----CcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcc
Q 015513 286 -----STTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISK 342 (405)
Q Consensus 286 -----~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~ 342 (405)
.++..+...|..+ .+...++.+...+.......+..+..+|..+..
T Consensus 159 ~~~~~~~r~~a~~~l~~~-----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~ 209 (335)
T COG1413 159 DAALLDVRAAAAEALGEL-----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGS 209 (335)
T ss_pred cchHHHHHHHHHHHHHHc-----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhc
Confidence 1233333333332 234456666665544445566666666665553
No 136
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.48 E-value=0.0044 Score=42.44 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=41.8
Q ss_pred HhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 015513 200 AVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQA 256 (405)
Q Consensus 200 ~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 256 (405)
.+|..|+++|.+++........-. ...+++.|+.+|+++ ++.++..|+++|.+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~--~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPY--LPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHH--HHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHH--HHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 578899999999875443333222 358899999999887 779999999999875
No 137
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0021 Score=59.24 Aligned_cols=48 Identities=25% Similarity=0.508 Sum_probs=41.0
Q ss_pred CCcccCcCCcccCCCccccC-CCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDPVTAI-TGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
|+.=.||+|.+--.+|-++. +|..||..||-.+..+ +.+||+|+.+..
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~--~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN--YGHCPVTGYPAS 346 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHh--cCCCCccCCcch
Confidence 44458999999999998775 6999999999999974 579999998764
No 138
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.37 E-value=0.011 Score=46.03 Aligned_cols=69 Identities=10% Similarity=0.067 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhccc
Q 015513 108 RISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHH 178 (405)
Q Consensus 108 ~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~ 178 (405)
+...++.|.+++-.++.+++.+.+.|++|.+++.-.-. +.++-.+|.|+.++.+|+.+++++++.|.+-
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD--~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID--DHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC--cccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 34566778899999999999999999999998875422 3345568999999999999999999888754
No 139
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=96.30 E-value=0.0039 Score=41.80 Aligned_cols=46 Identities=26% Similarity=0.469 Sum_probs=26.3
Q ss_pred cccCcCCcccCCCcccc-CCCCc--ccHHHHHHHHhcCCCCCCCCCCCC
Q 015513 9 YFICPISLQIMKDPVTA-ITGIS--YDRESIEKWLKTAKDTTCPVTKQP 54 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv~~-~~g~~--~~r~~I~~~~~~~~~~~cP~~~~~ 54 (405)
.+.|||+...|+-||-. .|.|. ||-...-+...+.+.-.||+|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 36899999999999955 68887 777665555544435679999763
No 140
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.052 Score=55.10 Aligned_cols=177 Identities=10% Similarity=0.070 Sum_probs=121.4
Q ss_pred hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHh--hcc-cchhHHHHHHHHHhhhcCCCcHHhHHHHHHH
Q 015513 132 AFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKAL--VDH-HNQDLIGALMWVLQWENNDRHVAVKTSAMIV 208 (405)
Q Consensus 132 ~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~--i~~-~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~ 208 (405)
..++|.|..+|.+.+... +|-|.++|..++.++.+.-+. ..+ .. -.+|.++.+.++ .++.+|..|+.+
T Consensus 127 pelLp~L~~~L~s~d~n~----~EgA~~AL~KIcEDsa~~lds~~~~rpl~-~mipkfl~f~~h----~spkiRs~A~~c 197 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNT----CEGAFGALQKICEDSAQFLDSDVLTRPLN-IMIPKFLQFFKH----PSPKIRSHAVGC 197 (885)
T ss_pred hhHHHHHHHHhcCCcccc----cchhHHHHHHHHhhhHHHHhhhcccCchH-HhHHHHHHHHhC----CChhHHHHHHhh
Confidence 457899999998765333 899999999998765432111 100 01 157888899998 899999999998
Q ss_pred HHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcH
Q 015513 209 LKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTT 288 (405)
Q Consensus 209 L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~ 288 (405)
+-............. -..+++.|..+-.+. ++++++....+|..|-.....+..=-=.++|..++...++. ++++.
T Consensus 198 vNq~i~~~~qal~~~--iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~-dE~VA 273 (885)
T KOG2023|consen 198 VNQFIIIQTQALYVH--IDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV-DENVA 273 (885)
T ss_pred hhheeecCcHHHHHH--HHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCc-chhHH
Confidence 877654433222222 236788888887666 99999999999988876544332222246777788877775 77899
Q ss_pred HHHHHHHHHHhcCHhhHHHHHhc-ccchHHHHHH
Q 015513 289 ELIFNLLAQLCSCADGRLKFREH-AGAIAMVTKR 321 (405)
Q Consensus 289 e~a~~~L~~L~~~~~~~~~i~~~-~g~i~~Lv~~ 321 (405)
-+|+.-...+|..+.-+..+..+ ...||.|++-
T Consensus 274 LEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~ 307 (885)
T KOG2023|consen 274 LEACEFWLALAEQPICKEVLQPYLDKLIPVLLSG 307 (885)
T ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHcc
Confidence 99999999999877555544321 2356666653
No 141
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.81 Score=42.97 Aligned_cols=225 Identities=14% Similarity=0.131 Sum_probs=137.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHH-HHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHH
Q 015513 105 GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLF-IITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLI 183 (405)
Q Consensus 105 ~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~l-L~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i 183 (405)
.++...|...+..++.. +..-+.+.+......+-.. |.....+ -.+...+.++..+.+-+++.......+| .+
T Consensus 142 deVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcnd---iaRvRVleLIieifSiSpesaneckkSG--Ll 215 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCND---IARVRVLELIIEIFSISPESANECKKSG--LL 215 (524)
T ss_pred HHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhh---HHHHHHHHHHHHHHhcCHHHHhHhhhhh--HH
Confidence 36667778888888763 3334455555444443221 1111111 2356667777777766666666666676 77
Q ss_pred HHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhc-CChHHHHHHH----HHHHHhcc
Q 015513 184 GALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKEN-ISQQATKSGL----HVLLQACP 258 (405)
Q Consensus 184 ~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~-~~~~~~~~a~----~aL~~L~~ 258 (405)
..|..-|+. ..+.-++-+++.+...|+..+..+.... ..|.|..+..++... .+|-.+-.++ +.+.+..-
T Consensus 216 dlLeaElkG---teDtLVianciElvteLaeteHgrefla--QeglIdlicnIIsGadsdPfekfralmgfgkffgkeai 290 (524)
T KOG4413|consen 216 DLLEAELKG---TEDTLVIANCIELVTELAETEHGREFLA--QEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAI 290 (524)
T ss_pred HHHHHHhcC---CcceeehhhHHHHHHHHHHHhhhhhhcc--hhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHH
Confidence 766666663 1567788899999999998877777655 678888888888643 2332222232 22223332
Q ss_pred CCchhHHHHhh--cchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHcc----ChhhhHH
Q 015513 259 MGGNRVKITEA--NAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRV----SPATNDR 332 (405)
Q Consensus 259 ~~~n~~~~v~~--g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~----s~~~~e~ 332 (405)
.+-.-.+++++ -+|.-..+++... |....+.|..+|..|-+..+|..-+... |-|..-.++.+. ....++.
T Consensus 291 mdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilGSnteGadlllkT--gppaaehllarafdqnahakqea 367 (524)
T KOG4413|consen 291 MDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILGSNTEGADLLLKT--GPPAAEHLLARAFDQNAHAKQEA 367 (524)
T ss_pred hhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhccCCcchhHHHhcc--CChHHHHHHHHHhcccccchHHH
Confidence 22222333332 2445556666665 8889999999999999888888877553 334443433332 2355788
Q ss_pred HHHHHHHhccc
Q 015513 333 AVHILSSISKF 343 (405)
Q Consensus 333 a~~~L~~L~~~ 343 (405)
++.+|.+++..
T Consensus 368 aihaLaaIage 378 (524)
T KOG4413|consen 368 AIHALAAIAGE 378 (524)
T ss_pred HHHHHHHhhcc
Confidence 88888888764
No 142
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.33 Score=49.07 Aligned_cols=172 Identities=15% Similarity=0.136 Sum_probs=108.7
Q ss_pred cHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHH
Q 015513 198 HVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIE 277 (405)
Q Consensus 198 ~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~ 277 (405)
....+..++..|..++.......... -...+|.|.+.|-+. .+++++++..+|..+++.-+|-.. . -.+|.|++
T Consensus 267 kWrtK~aslellg~m~~~ap~qLs~~--lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~dI--~-~~ip~Lld 340 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPKQLSLC--LPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPDI--Q-KIIPTLLD 340 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchHHHHHH--HhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHHH--H-HHHHHHHH
Confidence 45678889999998877655444333 468899999999887 899999999999999997777662 2 37888999
Q ss_pred HhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccch----HHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHH
Q 015513 278 LELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAI----AMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEM 353 (405)
Q Consensus 278 lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i----~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~ 353 (405)
-+.+. ... ...++..|..-. ....+. +-.+ |.|-+-+...+...+..++.+.+++|..-.++....
T Consensus 341 ~l~dp-~~~-~~e~~~~L~~tt-----FV~~V~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~la-- 410 (569)
T KOG1242|consen 341 ALADP-SCY-TPECLDSLGATT-----FVAEVD-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLA-- 410 (569)
T ss_pred HhcCc-ccc-hHHHHHhhccee-----eeeeec-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHh--
Confidence 88763 222 344444443211 001111 1223 333333333345666788899999998765542222
Q ss_pred HhcChHHHHHHHHhc---cCcHHHHHHHHHHH-HHhhcc
Q 015513 354 LSVGAVSKLCMVTQA---DCEKYLKDRAKEIL-RLHSNV 388 (405)
Q Consensus 354 ~~~G~v~~Ll~ll~~---~~~~~~k~~A~~ll-~~l~~~ 388 (405)
-.++.|+.-++. +..|++|.-|+..| .++.+.
T Consensus 411 ---pfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 411 ---PFLPSLLPGLKENLDDAVPEVRAVAARALGALLERL 446 (569)
T ss_pred ---hhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 244555544432 34689999998888 444443
No 143
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.09 E-value=1.5 Score=44.17 Aligned_cols=236 Identities=15% Similarity=0.119 Sum_probs=114.3
Q ss_pred HHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHh
Q 015513 135 VRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLE 214 (405)
Q Consensus 135 v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~ 214 (405)
...+..+|.+..++-..-+.-+++.++..++..+- .-+.+. . ++..|-.+|++ .....|-.|.++|-.|+.
T Consensus 262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv-~~~~~~--~--~vs~L~~fL~s----~rv~~rFsA~Riln~lam 332 (898)
T COG5240 262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENV-GSQFVD--Q--TVSSLRTFLKS----TRVVLRFSAMRILNQLAM 332 (898)
T ss_pred HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc-CHHHHH--H--HHHHHHHHHhc----chHHHHHHHHHHHHHHHh
Confidence 34444555444332111235666677766653320 011111 1 56666667776 778889999999999987
Q ss_pred hhccchhhh----------------------cc---cHHHHHHHHHHHhh---cCChHHHHHHHHHHHHhccCCchhHH-
Q 015513 215 LASKGLLES----------------------TL---NLDFFKEMVKLLKE---NISQQATKSGLHVLLQACPMGGNRVK- 265 (405)
Q Consensus 215 ~~~~~~~i~----------------------~~---~~g~i~~Lv~lL~~---~~~~~~~~~a~~aL~~L~~~~~n~~~- 265 (405)
....+.... +. ...-|..|++++-+ ..+...+..+..|++.||..-+.++.
T Consensus 333 ~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s 412 (898)
T COG5240 333 KYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLS 412 (898)
T ss_pred hCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHH
Confidence 544333111 01 12234455554432 12445667788888888875443222
Q ss_pred HH--------hhc-------chHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHH---H---Hhccc--------chH
Q 015513 266 IT--------EAN-------AVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLK---F---REHAG--------AIA 316 (405)
Q Consensus 266 ~v--------~~g-------~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~---i---~~~~g--------~i~ 316 (405)
+. +.| +|.++..++.. ++..+|.|+..|..--..-+..+- | ++.+| -|.
T Consensus 413 ~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~--~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvr 490 (898)
T COG5240 413 YLDFLGSSLLQEGGLEFKKYMVDAISDAMEN--DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVR 490 (898)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHH
Confidence 22 233 34445555443 345566665544433222111111 1 11110 111
Q ss_pred HHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 317 MVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 317 ~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
.+...++-...-.+..|+.+|...+-...+....+ .....|-+.+. +.++++|+.|..+|+.++.
T Consensus 491 hIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~-----sv~~~lkRcln-D~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 491 HIYNRLILENNIVRSAAVQALSKFALNISDVVSPQ-----SVENALKRCLN-DQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccCccccccHH-----HHHHHHHHHhh-cccHHHHHHHHHHHHhhhh
Confidence 22222222223345555666654444333321111 12222334444 6789999999999999884
No 144
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.0029 Score=59.96 Aligned_cols=60 Identities=23% Similarity=0.455 Sum_probs=45.0
Q ss_pred ccCcCCcccCCCcc-----ccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHH
Q 015513 10 FICPISLQIMKDPV-----TAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRL 70 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv-----~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~ 70 (405)
.+||||.+-..-|+ .+.|||-|-..||++|+.......||.|..+-.. .++.+-..+|..
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katk-r~i~~e~alR~q 69 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATK-RQIRPEYALRVQ 69 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHH-HHHHHHHHHHHH
Confidence 58999999888875 5579999999999999953223569999776655 556665555433
No 145
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.45 Score=48.11 Aligned_cols=251 Identities=13% Similarity=0.084 Sum_probs=146.6
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHH----HHHhcCCCchhhHHhhcccchh
Q 015513 106 HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALR----ILSLVWSPSNENKALVDHHNQD 181 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~----~L~~L~~~~~~~~~~i~~~g~~ 181 (405)
..+..|...+..+..+. .-..+.+.+.+..|...+.+...... +|.+.- +-.+|.. -.+-.
T Consensus 149 ~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~---re~~~~a~~~~~~~Lg~--------~~EPy-- 213 (569)
T KOG1242|consen 149 AERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALN---REAALLAFEAAQGNLGP--------PFEPY-- 213 (569)
T ss_pred HHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhc---HHHHHHHHHHHHHhcCC--------CCCch--
Confidence 44445555555544322 12344556667777777664432221 331111 1111211 11222
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
.++.+-.++.+.. +....+|+.|..+...+-..-.. .+ ++ -+++.++.=+.+. .+..+.+++..|..++...+
T Consensus 214 iv~~lp~il~~~~-d~~~~Vr~Aa~~a~kai~~~~~~---~a-VK-~llpsll~~l~~~-kWrtK~aslellg~m~~~ap 286 (569)
T KOG1242|consen 214 IVPILPSILTNFG-DKINKVREAAVEAAKAIMRCLSA---YA-VK-LLLPSLLGSLLEA-KWRTKMASLELLGAMADCAP 286 (569)
T ss_pred HHhhHHHHHHHhh-ccchhhhHHHHHHHHHHHHhcCc---ch-hh-HhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhch
Confidence 5555666665432 15667777777777666432110 01 11 3455555544444 78899999999999998877
Q ss_pred hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhc
Q 015513 262 NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSIS 341 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~ 341 (405)
..-...-..+||.|.+.|.+. .+++++.+..+|..++..-+|-. | . -.+|.|++.+-. .......++..|..-.
T Consensus 287 ~qLs~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~d-I-~--~~ip~Lld~l~d-p~~~~~e~~~~L~~tt 360 (569)
T KOG1242|consen 287 KQLSLCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPD-I-Q--KIIPTLLDALAD-PSCYTPECLDSLGATT 360 (569)
T ss_pred HHHHHHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHH-H-H--HHHHHHHHHhcC-cccchHHHHHhhccee
Confidence 777777789999999999885 88999999999999988666655 2 1 257778774322 2223444444443321
Q ss_pred ccCCCHHHHHHHHhcChHHHHHHHHhc---cCcHHHHHHHHHHHHHhhcccCCC
Q 015513 342 KFSATYEVVLEMLSVGAVSKLCMVTQA---DCEKYLKDRAKEILRLHSNVWNNS 392 (405)
Q Consensus 342 ~~~~~~~~~~~~~~~G~v~~Ll~ll~~---~~~~~~k~~A~~ll~~l~~~~~~~ 392 (405)
- -.-+++-.+..++.+|+. +.+..++++++.+..++.+-|.+-
T Consensus 361 F--------V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp 406 (569)
T KOG1242|consen 361 F--------VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDP 406 (569)
T ss_pred e--------eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCH
Confidence 1 111223344555555543 346778899999999998887543
No 146
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.94 E-value=0.0086 Score=39.97 Aligned_cols=42 Identities=26% Similarity=0.563 Sum_probs=32.8
Q ss_pred cCcCCcc--cCCCccccCCC-----CcccHHHHHHHHhcCCCCCCCCCC
Q 015513 11 ICPISLQ--IMKDPVTAITG-----ISYDRESIEKWLKTAKDTTCPVTK 52 (405)
Q Consensus 11 ~Cpi~~~--~m~dPv~~~~g-----~~~~r~~I~~~~~~~~~~~cP~~~ 52 (405)
.|-||++ .-.+|.+.||. |-+=+.|+.+|+...+..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4788886 45568788875 568899999999865567899985
No 147
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=0.11 Score=53.55 Aligned_cols=198 Identities=13% Similarity=0.042 Sum_probs=123.5
Q ss_pred chHHHHHHHHHhhccCC--Cch-hHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHH
Q 015513 133 FVVRALVLFIITSYKGN--KTT-GLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVL 209 (405)
Q Consensus 133 g~v~~Lv~lL~~~~~~~--~~~-~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L 209 (405)
+.+|.|+++|...+.+. +.. .-..|-..|..++.. +++-|+. . ++|.+-.-+++ .+..-++.|+-++
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~-~--Vl~Fiee~i~~----pdwr~reaavmAF 388 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIVP-H--VLPFIEENIQN----PDWRNREAAVMAF 388 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccchh-h--hHHHHHHhcCC----cchhhhhHHHHHH
Confidence 78889999987643322 111 123333444444321 2223333 2 55555556666 8888999999999
Q ss_pred HHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCC-chh-HHHHhhcchHHHHHHhhcCCCCCc
Q 015513 210 KMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMG-GNR-VKITEANAVFELIELELTKPEKST 287 (405)
Q Consensus 210 ~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~-~n~-~~~v~~g~v~~Lv~lL~~~~~~~~ 287 (405)
+.+-...+.....- ...++++.++.++.++ +.-++..++++|..++..- +.+ ...--.+.++.|++-|.+ ++.+
T Consensus 389 GSIl~gp~~~~Lt~-iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrv 464 (859)
T KOG1241|consen 389 GSILEGPEPDKLTP-IVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRV 464 (859)
T ss_pred HhhhcCCchhhhhH-HHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchH
Confidence 99887765544433 3468999999999977 8889999999999998743 211 122235677888888876 5788
Q ss_pred HHHHHHHHHHHhcCHh--h----HHHHHhcccchHHHHHHHHccCh-------hhhHHHHHHHHHhcccCCC
Q 015513 288 TELIFNLLAQLCSCAD--G----RLKFREHAGAIAMVTKRLLRVSP-------ATNDRAVHILSSISKFSAT 346 (405)
Q Consensus 288 ~e~a~~~L~~L~~~~~--~----~~~i~~~~g~i~~Lv~~l~~~s~-------~~~e~a~~~L~~L~~~~~~ 346 (405)
..+++|++.+|+..-. . ...... -..+.+++.|+...+ ..+-.|-.+|..|.+++++
T Consensus 465 a~N~CWAf~~Laea~~eA~~s~~qt~~~t--~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~ 534 (859)
T KOG1241|consen 465 ASNVCWAFISLAEAAYEAAVSNGQTDPAT--PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD 534 (859)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCccc--hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH
Confidence 9999999999984211 0 111111 133444554544432 3345566778877777664
No 148
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=2 Score=43.25 Aligned_cols=196 Identities=14% Similarity=0.058 Sum_probs=119.7
Q ss_pred hHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCC
Q 015513 181 DLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMG 260 (405)
Q Consensus 181 ~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~ 260 (405)
+.++.|..+|+. .+.+++..+-.+|.++-.+=.+...-+ .....++.||.-+.++ ++..+..|+.-|..+..-.
T Consensus 208 ~~ldGLf~~LsD----~s~eVr~~~~t~l~~fL~eI~s~P~s~-d~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~ 281 (675)
T KOG0212|consen 208 SLLDGLFNMLSD----SSDEVRTLTDTLLSEFLAEIRSSPSSM-DYDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIP 281 (675)
T ss_pred HHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHHHhcCcccc-CcccchhhccccccCC-cHHHHHHHHHHHHHHhcCC
Confidence 366778888886 788888777776666543322222222 2345678888888887 8889988998888888766
Q ss_pred chhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHH---HHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHH
Q 015513 261 GNRVKITEANAVFELIELELTKPEKSTTELIFNL---LAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHIL 337 (405)
Q Consensus 261 ~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~---L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L 337 (405)
.+....--+|++..++.++.+.....+++.+..+ |..++........+ +-...|..|.+.+.......+-.+..-+
T Consensus 282 g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~i-d~~~ii~vl~~~l~~~~~~tri~~L~Wi 360 (675)
T KOG0212|consen 282 GRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEI-DYGSIIEVLTKYLSDDREETRIAVLNWI 360 (675)
T ss_pred CcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhcccc-chHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 5555555578888888888775233566666554 34444444433332 2223445555533322334444455555
Q ss_pred HHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 338 SSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 338 ~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
..|-+..+.+ -.......++.|+.-|. +.++.+-..+-.++..+..
T Consensus 361 ~~l~~~~p~q---l~~h~~~if~tLL~tLs-d~sd~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 361 ILLYHKAPGQ---LLVHNDSIFLTLLKTLS-DRSDEVVLLALSLLASICS 406 (675)
T ss_pred HHHHhhCcch---hhhhccHHHHHHHHhhc-CchhHHHHHHHHHHHHHhc
Confidence 5566555542 22233456777777775 6778877777777765544
No 149
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.76 E-value=0.11 Score=43.73 Aligned_cols=125 Identities=9% Similarity=0.020 Sum_probs=89.3
Q ss_pred HHHHHhchHHHHHHHHHhhccC--CCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHH
Q 015513 127 KSLEEAFVVRALVLFIITSYKG--NKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTS 204 (405)
Q Consensus 127 ~~i~~~g~v~~Lv~lL~~~~~~--~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~ 204 (405)
..++..||+..|++++.+.... ...+....++.+..+|..+.--..+.+... .|...+..+.... .+..+.+.
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~---FI~Kia~~Vn~~~--~d~~i~q~ 79 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDS---FIKKIASYVNSSA--MDASILQR 79 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHH---HHHHHHHHHcccc--ccchHHHH
Confidence 4677889999999999865420 011335667888888876554344544432 7888888887632 47889999
Q ss_pred HHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 015513 205 AMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP 258 (405)
Q Consensus 205 A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~ 258 (405)
|...|.++..........+ .+.=-++.|+..|+.. +++.+..|...+-.|-.
T Consensus 80 sLaILEs~Vl~S~~ly~~V-~~evt~~~Li~hLq~~-~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 80 SLAILESIVLNSPKLYQLV-EQEVTLESLIRHLQVS-NQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHHHHHhCCHHHHHHH-hccCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHh
Confidence 9999999987666544444 3333478899999987 88999999988888765
No 150
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=95.70 E-value=0.0095 Score=43.02 Aligned_cols=43 Identities=28% Similarity=0.591 Sum_probs=34.2
Q ss_pred cCcCCcccCCC----cccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCC
Q 015513 11 ICPISLQIMKD----PVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPL 55 (405)
Q Consensus 11 ~Cpi~~~~m~d----Pv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~ 55 (405)
+||-|+--|.. ||.- .|+|.|--.||.+|+.. ...||.++++.
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T--k~~CPld~q~w 80 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT--KGVCPLDRQTW 80 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh--CCCCCCCCcee
Confidence 67777776632 5655 69999999999999976 46899998875
No 151
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.0064 Score=57.77 Aligned_cols=49 Identities=18% Similarity=0.437 Sum_probs=39.7
Q ss_pred CCcccCcCCcccCCCcc-------c-cCCCCcccHHHHHHHHhcCC-----CCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDPV-------T-AITGISYDRESIEKWLKTAK-----DTTCPVTKQPL 55 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv-------~-~~~g~~~~r~~I~~~~~~~~-----~~~cP~~~~~~ 55 (405)
-.+..|=||++...+++ + ..|.|+||..||.+|-.... ...||+||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 45789999999999987 3 45999999999999974332 36799999865
No 152
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.59 E-value=0.48 Score=43.24 Aligned_cols=155 Identities=15% Similarity=0.105 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCc-hhHHHHHHHHHhcCCC-chhhHHhhcccchhHH
Q 015513 106 HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKT-TGLEEALRILSLVWSP-SNENKALVDHHNQDLI 183 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~-~~~e~A~~~L~~L~~~-~~~~~~~i~~~g~~~i 183 (405)
+..++|+.-|+-++. +++.|..+.++...-.|-.+|...+..... ..+-.+++++..|.+. +.+.-..+.... .+
T Consensus 65 nRVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tE--ii 141 (262)
T PF04078_consen 65 NRVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTE--II 141 (262)
T ss_dssp HHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTT--HH
T ss_pred HHHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhc--hH
Confidence 556778888888886 788899999999988888998654322111 2345677888887663 445566666776 99
Q ss_pred HHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhccc-------HHHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 015513 184 GALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLN-------LDFFKEMVKLLKENISQQATKSGLHVLLQA 256 (405)
Q Consensus 184 ~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~-------~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 256 (405)
|..++.+.. |+.-.+.-|..++..+-.++.+-.-+. .. ..++..+|.-+....++...+...++-..|
T Consensus 142 plcLr~me~----GselSKtvAtfIlqKIL~dd~GL~yiC-~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRL 216 (262)
T PF04078_consen 142 PLCLRIMEF----GSELSKTVATFILQKILLDDVGLNYIC-QTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRL 216 (262)
T ss_dssp HHHHHHHHH----S-HHHHHHHHHHHHHHHHSHHHHHHHT-SSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----ccHHHHHHHHHHHHHHHcchhHHHHHh-cCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHH
Confidence 999999998 889999999999999887765433332 11 123444444344434899999999999999
Q ss_pred ccCCchhHHHHh
Q 015513 257 CPMGGNRVKITE 268 (405)
Q Consensus 257 ~~~~~n~~~~v~ 268 (405)
+.++..+..+.+
T Consensus 217 sdnprar~aL~~ 228 (262)
T PF04078_consen 217 SDNPRAREALRQ 228 (262)
T ss_dssp TTSTTHHHHHHH
T ss_pred ccCHHHHHHHHH
Confidence 999998888764
No 153
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.68 Score=46.21 Aligned_cols=186 Identities=10% Similarity=-0.018 Sum_probs=119.7
Q ss_pred HHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHh
Q 015513 159 RILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLK 238 (405)
Q Consensus 159 ~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~ 238 (405)
-.|..++.+..-.|.-+.... ..+.|+.+|+. .+..+..-+...+.|+-..-++-..-+ .+.|+|..|++++.
T Consensus 411 l~LkS~SrSV~~LRTgL~d~~--I~elLi~~Ls~----Peimi~~~~t~~icn~vv~fsnL~~~f-L~~~iIdvl~~~v~ 483 (743)
T COG5369 411 LFLKSMSRSVTFLRTGLLDYP--IVELLIDALSN----PEIMIEFPDTIDICNKVVPFSNLGAGF-LEKSIIDVLVNLVM 483 (743)
T ss_pred HHHHHhhHHHHHHHhhccccc--hHHHHHHHhcC----ccceeeccchhhhhheeeeccchHHHH-HHhhHHHHHHHHhh
Confidence 344445555444566667777 88999999987 555556666677777655444444444 56799999999999
Q ss_pred hcCChHHHHHHHHHHHHhccCCchh--HHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHh-h--HHHHHhcc-
Q 015513 239 ENISQQATKSGLHVLLQACPMGGNR--VKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCAD-G--RLKFREHA- 312 (405)
Q Consensus 239 ~~~~~~~~~~a~~aL~~L~~~~~n~--~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~-~--~~~i~~~~- 312 (405)
+. +...+++..|.|+.+..+.++- -++...-++.-++++..+. .=.+++..+.+|.|+.-... + ...+.-..
T Consensus 484 sK-DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~~K~~ 561 (743)
T COG5369 484 SK-DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKAT 561 (743)
T ss_pred cc-hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeEEecC
Confidence 87 7789999999999999977643 3455666778888888764 66899999999999864211 1 11110000
Q ss_pred ---cchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHh
Q 015513 313 ---GAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLS 355 (405)
Q Consensus 313 ---g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~ 355 (405)
--...|++.+-...+-..+...-+|.+++-..++ .+..+.+
T Consensus 562 p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~--l~~~V~~ 605 (743)
T COG5369 562 PRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDT--LDYIVQS 605 (743)
T ss_pred hHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccch--HHHHHHh
Confidence 0112333333223455566667777777754433 3444443
No 154
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.0031 Score=56.42 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=40.0
Q ss_pred cccCcCCcccCCCcc----------ccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 9 YFICPISLQIMKDPV----------TAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv----------~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
+=.|-+|++-+.+-| .++|||.|--.||.-|.--+...+||-|++...
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 357999998877766 679999999999999977655679999988753
No 155
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.47 E-value=0.33 Score=51.97 Aligned_cols=196 Identities=14% Similarity=0.006 Sum_probs=125.0
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHh--cCCCchhhH
Q 015513 95 VRKLVRDLDSGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSL--VWSPSNENK 172 (405)
Q Consensus 95 i~~lv~~l~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~--L~~~~~~~~ 172 (405)
++-.++-|=+..-|..||.-|..+..-.+=.-..-...|..|-++++|++...+ ..-.+..+.. |+.+ +.++
T Consensus 474 LPiVLQVLLSQvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~E-----LrpiLVFIWAKILAvD-~SCQ 547 (1387)
T KOG1517|consen 474 LPIVLQVLLSQVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARE-----LRPILVFIWAKILAVD-PSCQ 547 (1387)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHh-----hhhhHHHHHHHHHhcC-chhH
Confidence 333333333333445555555444433332223334569999999999876322 3333332222 4445 4555
Q ss_pred HhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHH
Q 015513 173 ALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHV 252 (405)
Q Consensus 173 ~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a 252 (405)
.-+++.+ +-..++.+|..+. .-+++-+..|+.+|..+..+-.-..... ...+.|..-...|.++..+-.+...+-+
T Consensus 548 ~dLvKe~--g~~YF~~vL~~~~-~~~~EqrtmaAFVLAviv~nf~lGQ~ac-l~~~li~iCle~lnd~~~pLLrQW~~ic 623 (1387)
T KOG1517|consen 548 ADLVKEN--GYKYFLQVLDPSQ-AIPPEQRTMAAFVLAVIVRNFKLGQKAC-LNGNLIGICLEHLNDDPEPLLRQWLCIC 623 (1387)
T ss_pred HHHHhcc--CceeEEEEecCcC-CCCHHHHHHHHHHHHHHHcccchhHHHh-ccccHHHHHHHHhcCCccHHHHHHHHHH
Confidence 5555443 3455666666411 1456788889999988876543333333 3556677667777774357789999999
Q ss_pred HHHhcc-CCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcC
Q 015513 253 LLQACP-MGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSC 301 (405)
Q Consensus 253 L~~L~~-~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~ 301 (405)
|..|-. ++++|..=++.++..-|+.+|++. -.+++..|+-+|..+...
T Consensus 624 LG~LW~d~~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 624 LGRLWEDYDEARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHHHhhhcchhhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHHHHhcc
Confidence 999987 466888888999999999999874 678999999999998874
No 156
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.44 E-value=0.0062 Score=57.48 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=40.5
Q ss_pred cCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 11 ICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 11 ~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.|-||-+-=+|=-+=||||-.|-.|+..|....+..+||+||..+.-
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 79999998888767799999999999999876546789999988753
No 157
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.43 E-value=1.4 Score=45.78 Aligned_cols=257 Identities=13% Similarity=0.106 Sum_probs=131.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHh--HHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchh--hHHhhcccch
Q 015513 105 GHLRISTLKKMEALAMENERN--RKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNE--NKALVDHHNQ 180 (405)
Q Consensus 105 ~~~~~~Al~~L~~l~~~~~~~--r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~--~~~~i~~~g~ 180 (405)
+.++.+|+..+..++.--... -+.+...|.| |-..|... .+++....+.+|..+...-.- ...-+ .+
T Consensus 813 a~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgee----ypEvLgsILgAikaI~nvigm~km~pPi--~d- 883 (1172)
T KOG0213|consen 813 AKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEE----YPEVLGSILGAIKAIVNVIGMTKMTPPI--KD- 883 (1172)
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcc----cHHHHHHHHHHHHHHHHhccccccCCCh--hh-
Confidence 467777777666665421111 1223334544 33444322 223344444444443221100 01111 23
Q ss_pred hHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCC
Q 015513 181 DLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMG 260 (405)
Q Consensus 181 ~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~ 260 (405)
.+|.|.-+|++ ....++++++.++..++.......-.. .=....=.|+++|+.. +.+.+++|..++..++.-
T Consensus 884 -llPrltPILkn----rheKVqen~IdLvg~IadrgpE~v~aR-EWMRIcfeLlelLkah-kK~iRRaa~nTfG~Iaka- 955 (1172)
T KOG0213|consen 884 -LLPRLTPILKN----RHEKVQENCIDLVGTIADRGPEYVSAR-EWMRICFELLELLKAH-KKEIRRAAVNTFGYIAKA- 955 (1172)
T ss_pred -hcccchHhhhh----hHHHHHHHHHHHHHHHHhcCcccCCHH-HHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHh-
Confidence 78999999998 888999999999999997765432211 0012344688899887 789999999998877742
Q ss_pred chhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHh
Q 015513 261 GNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSI 340 (405)
Q Consensus 261 ~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L 340 (405)
+.-..++..|++-|... +...+-...-+++..+ +...- -..+|.|+. .+.....-..-++|.+|
T Consensus 956 -----IGPqdVLatLlnnLkvq-eRq~RvcTtvaIaIVa---E~c~p----FtVLPalmn---eYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen 956 -----IGPQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVA---ETCGP----FTVLPALMN---EYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred -----cCHHHHHHHHHhcchHH-HHHhchhhhhhhhhhh---hhcCc----hhhhHHHHh---hccCchhHHHHhHHHHH
Confidence 22233445555555432 2111111111111111 11111 113444444 22222222233667777
Q ss_pred cccCCCHHHHHHHHh--cChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccCCCCCcch
Q 015513 341 SKFSATYEVVLEMLS--VGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWNNSPCIQV 397 (405)
Q Consensus 341 ~~~~~~~~~~~~~~~--~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~~~~~ 397 (405)
|.... -..+|.. .-++.+|+.-.--+.+...|+-|..+++-+.-......|.+.
T Consensus 1020 sf~Fe---yigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda 1075 (1172)
T KOG0213|consen 1020 SFMFE---YIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDA 1075 (1172)
T ss_pred HHHHH---HHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHH
Confidence 75421 1222221 113444443322366888899999999877766555556655
No 158
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.40 E-value=0.28 Score=52.45 Aligned_cols=202 Identities=14% Similarity=0.073 Sum_probs=128.4
Q ss_pred ccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhh-c-CChHHHHHHHHHHH
Q 015513 177 HHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKE-N-ISQQATKSGLHVLL 254 (405)
Q Consensus 177 ~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~-~-~~~~~~~~a~~aL~ 254 (405)
..| ..|-++++|++ ...+.+.--+.+=..+...+.++..-. ++.++-...+..|.+ . .+++-+..|+-.|.
T Consensus 510 sVG--IFPYVLKLLQS----~a~ELrpiLVFIWAKILAvD~SCQ~dL-vKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLA 582 (1387)
T KOG1517|consen 510 SVG--IFPYVLKLLQS----SARELRPILVFIWAKILAVDPSCQADL-VKENGYKYFLQVLDPSQAIPPEQRTMAAFVLA 582 (1387)
T ss_pred ccc--hHHHHHHHhcc----chHhhhhhHHHHHHHHHhcCchhHHHH-HhccCceeEEEEecCcCCCCHHHHHHHHHHHH
Confidence 456 89999999998 777887766666555554455555443 455666666777766 2 35688888999999
Q ss_pred HhccCC-chhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcC-HhhHHHHHhcccchHHHHHHHHccChhhhHH
Q 015513 255 QACPMG-GNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSC-ADGRLKFREHAGAIAMVTKRLLRVSPATNDR 332 (405)
Q Consensus 255 ~L~~~~-~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~ 332 (405)
.++.+- -.++...+.+.+..-++.|.++.+.-++.=.+-.|..|=.+ .+.|..=++ .++...|+.+|.....+++-.
T Consensus 583 viv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r-~~AhekL~~~LsD~vpEVRaA 661 (1387)
T KOG1517|consen 583 VIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRR-DNAHEKLILLLSDPVPEVRAA 661 (1387)
T ss_pred HHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccc-ccHHHHHHHHhcCccHHHHHH
Confidence 999864 47778888999999999998752344555556666666543 344554333 567888888554455677888
Q ss_pred HHHHHHHhcccC----C-CHHHHHH--------HHhcChHH----HHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 333 AVHILSSISKFS----A-TYEVVLE--------MLSVGAVS----KLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 333 a~~~L~~L~~~~----~-~~~~~~~--------~~~~G~v~----~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
|+-+|..+-... . ....+++ +.-+..+. .++.+++ ++++-.|..-+..|.-+..
T Consensus 662 AVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vs-dgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 662 AVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVS-DGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred HHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHh-ccchHHHHHHHHHHHHHHH
Confidence 888888866542 1 1112211 11112222 4555555 6777777655555554443
No 159
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.011 Score=56.15 Aligned_cols=43 Identities=26% Similarity=0.571 Sum_probs=37.1
Q ss_pred ccCcCCcccCCC---ccccCCCCcccHHHHHHHHhcCCC--CCCCCCCC
Q 015513 10 FICPISLQIMKD---PVTAITGISYDRESIEKWLKTAKD--TTCPVTKQ 53 (405)
Q Consensus 10 ~~Cpi~~~~m~d---Pv~~~~g~~~~r~~I~~~~~~~~~--~~cP~~~~ 53 (405)
|.|||..+--.| |+.+.|||.-+|.+|.+...+ |. ..||=|-.
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~n-g~~sfKCPYCP~ 382 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKN-GSQSFKCPYCPV 382 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhC-CCeeeeCCCCCc
Confidence 799999988877 999999999999999999865 35 66998843
No 160
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=1.4 Score=41.38 Aligned_cols=201 Identities=9% Similarity=0.082 Sum_probs=129.6
Q ss_pred cccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHH--HHHHHhhcCChHHHHHHHHHH
Q 015513 176 DHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKE--MVKLLKENISQQATKSGLHVL 253 (405)
Q Consensus 176 ~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~--Lv~lL~~~~~~~~~~~a~~aL 253 (405)
+..+ .++.++..+.. .+.++...|...|..++.....-..+. ....... ++.+-... +.-++-..+..+
T Consensus 125 vNae--ilklildcIgg----eddeVAkAAiesikrialfpaaleaiF--eSellDdlhlrnlaakc-ndiaRvRVleLI 195 (524)
T KOG4413|consen 125 VNAE--ILKLILDCIGG----EDDEVAKAAIESIKRIALFPAALEAIF--ESELLDDLHLRNLAAKC-NDIARVRVLELI 195 (524)
T ss_pred hhhh--HHHHHHHHHcC----CcHHHHHHHHHHHHHHHhcHHHHHHhc--ccccCChHHHhHHHhhh-hhHHHHHHHHHH
Confidence 3455 88888888886 889999999999999988776655555 3344333 33333333 556777788888
Q ss_pred HHhcc-CCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHH
Q 015513 254 LQACP-MGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDR 332 (405)
Q Consensus 254 ~~L~~-~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~ 332 (405)
..+.+ .++.....-..|.+..|..-+....|.-+....+.....|+....+|+-+. ..|.|..+-. +..+.+...=.
T Consensus 196 ieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgrefla-QeglIdlicn-IIsGadsdPfe 273 (524)
T KOG4413|consen 196 IEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLA-QEGLIDLICN-IISGADSDPFE 273 (524)
T ss_pred HHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcc-hhhHHHHHHH-HhhCCCCCcHH
Confidence 88877 455666667789999888888764466678888888889988777877654 4677777776 55554433323
Q ss_pred HHHHHHHhcccCCCHHHHHHHHhcC-------hHHHHHHHHhccCcHHHHHHHHHHHHHhhccc
Q 015513 333 AVHILSSISKFSATYEVVLEMLSVG-------AVSKLCMVTQADCEKYLKDRAKEILRLHSNVW 389 (405)
Q Consensus 333 a~~~L~~L~~~~~~~~~~~~~~~~G-------~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~ 389 (405)
..+++....+..+.. .+..+.+.. ++..-++++.. .++...+.|...+..+..+.
T Consensus 274 kfralmgfgkffgke-aimdvseeaicealiiaidgsfEmiEm-nDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 274 KFRALMGFGKFFGKE-AIMDVSEEAICEALIIAIDGSFEMIEM-NDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred HHHHHHHHHHHhcch-HHhhcCHHHHHHHHHHHHHhhHHhhhc-CCchHHHHHHHHHHhccCCc
Confidence 333333333322211 222222222 34445555553 47778899999999888764
No 161
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.23 E-value=0.5 Score=43.09 Aligned_cols=208 Identities=15% Similarity=0.106 Sum_probs=125.9
Q ss_pred HHHHhcchhHHHHHHHHHHHHHHhhHHhHHHHHH-hchHHHHHHHHHhhccCCCc--------hhHHHHHHHHHhcCCCc
Q 015513 98 LVRDLDSGHLRISTLKKMEALAMENERNRKSLEE-AFVVRALVLFIITSYKGNKT--------TGLEEALRILSLVWSPS 168 (405)
Q Consensus 98 lv~~l~~~~~~~~Al~~L~~l~~~~~~~r~~i~~-~g~v~~Lv~lL~~~~~~~~~--------~~~e~A~~~L~~L~~~~ 168 (405)
+|..+.+++.|..|+.+|..--...+.--..+-. -|.+..|+.-+-+.+..-++ .-..+|+++|..+++++
T Consensus 2 ~i~~L~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshp 81 (262)
T PF04078_consen 2 LILDLCNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHP 81 (262)
T ss_dssp HHHHTSSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-T
T ss_pred hhHHhcCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcCh
Confidence 5667777888998888775432222222222333 58888888776665532221 12467888888888875
Q ss_pred hhhHHhhcccchhHHHHHHHHHhhhcCC-CcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHH
Q 015513 169 NENKALVDHHNQDLIGALMWVLQWENND-RHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATK 247 (405)
Q Consensus 169 ~~~~~~i~~~g~~~i~~Lv~lL~~~~~~-~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~ 247 (405)
+.|....++. ..-.|.-+|...... .-...|-.+.++++.|...++....-.+...+.+|..++.++.| +.-.+.
T Consensus 82 -etr~~Fl~a~--iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKt 157 (262)
T PF04078_consen 82 -ETRMPFLKAH--IPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKT 157 (262)
T ss_dssp -TTHHHHHHTT--GGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHH
T ss_pred -HHHHHHHHcC--chhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHH
Confidence 5666666665 332344455431100 12345778888999998755433322234668999999999998 778888
Q ss_pred HHHHHHHHhccCCchhHHHHh--------hcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHH
Q 015513 248 SGLHVLLQACPMGGNRVKITE--------ANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFR 309 (405)
Q Consensus 248 ~a~~aL~~L~~~~~n~~~~v~--------~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~ 309 (405)
.|.-.+..+-.++.+-..+.. ..++..+|.-+...++..+-++.+..-.+|+.++..|.++.
T Consensus 158 vAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~ 227 (262)
T PF04078_consen 158 VATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALR 227 (262)
T ss_dssp HHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred HHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHH
Confidence 888888877665543222221 22444444444444467788889999999998888888774
No 162
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=95.19 E-value=0.015 Score=51.16 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=43.0
Q ss_pred ccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCC--CCCCCCCCCCCcccHHH
Q 015513 10 FICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPV--TKQPLPRDSGLTSNHTL 67 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~--~~~~~~~~~~~~~n~~l 67 (405)
.+|||+.+...-|++. .|+|.|++..|.+.+.-.-...||. |-+.... ..+...+.|
T Consensus 190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~-~~~v~d~Il 249 (275)
T COG5627 190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVV-DPYVCDHIL 249 (275)
T ss_pred ccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheec-cchhhhHHH
Confidence 4899999999999877 6999999999999986322356997 7666544 455555444
No 163
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.13 E-value=0.14 Score=37.24 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHH
Q 015513 245 ATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFR 309 (405)
Q Consensus 245 ~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~ 309 (405)
-.+.|++|+.++++.+.....+-+.++|+.++++....+.-.++--+.-+|..++.+.++.+.+-
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~ 67 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILD 67 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 36889999999999888888888889999999999876456899999999999999998888763
No 164
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=2.6 Score=44.22 Aligned_cols=106 Identities=20% Similarity=0.227 Sum_probs=64.7
Q ss_pred chHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHH
Q 015513 133 FVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMV 212 (405)
Q Consensus 133 g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L 212 (405)
+.+-.++..|+..-...+.-++..|+.+|.+++... ..+ +..|.+.+++++ .++-++.+|+.+...+
T Consensus 103 dvllLltNslknDL~s~nq~vVglAL~alg~i~s~E-mar--------dlapeVe~Ll~~----~~~~irKKA~Lca~r~ 169 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPE-MAR--------DLAPEVERLLQH----RDPYIRKKAALCAVRF 169 (866)
T ss_pred HHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHH-HhH--------HhhHHHHHHHhC----CCHHHHHHHHHHHHHH
Confidence 455566777765443333345788999999997542 221 156667788887 7899999999988877
Q ss_pred HhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 015513 213 LELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP 258 (405)
Q Consensus 213 ~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~ 258 (405)
-....+-. .-++++..++|.+. ++.+...++..+..+|.
T Consensus 170 irK~P~l~------e~f~~~~~~lL~ek-~hGVL~~~l~l~~e~c~ 208 (866)
T KOG1062|consen 170 IRKVPDLV------EHFVIAFRKLLCEK-HHGVLIAGLHLITELCK 208 (866)
T ss_pred HHcCchHH------HHhhHHHHHHHhhc-CCceeeeHHHHHHHHHh
Confidence 54332211 23445555555554 45555555555555554
No 165
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.99 E-value=0.024 Score=37.30 Aligned_cols=43 Identities=21% Similarity=0.386 Sum_probs=21.2
Q ss_pred CcCCcccC--CCcccc--CCCCcccHHHHHHHHhcCCCCCCCCCCCCC
Q 015513 12 CPISLQIM--KDPVTA--ITGISYDRESIEKWLKTAKDTTCPVTKQPL 55 (405)
Q Consensus 12 Cpi~~~~m--~dPv~~--~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~ 55 (405)
||+|.+.| +|--.. +||+..|+.|..+-.++ +...||-||+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~-~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN-EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS-S-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc-cCCCCCCCCCCC
Confidence 89999888 222233 59999999997777653 357899999875
No 166
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.97 E-value=0.24 Score=43.47 Aligned_cols=126 Identities=9% Similarity=-0.040 Sum_probs=86.4
Q ss_pred HHHHHHHHHhcCCCchhhHHhhcccc-------------hhHHHHHHHHHhhhc--CCCcHHhHHHHHHHHHHHHhhhcc
Q 015513 154 LEEALRILSLVWSPSNENKALVDHHN-------------QDLIGALMWVLQWEN--NDRHVAVKTSAMIVLKMVLELASK 218 (405)
Q Consensus 154 ~e~A~~~L~~L~~~~~~~~~~i~~~g-------------~~~i~~Lv~lL~~~~--~~~~~~~~~~A~~~L~~L~~~~~~ 218 (405)
-..++.+|.||+..+..++.++.... +..+..|+..+.... ..+...-....+.++.|++...+.
T Consensus 12 adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~g 91 (192)
T PF04063_consen 12 ADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEG 91 (192)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHH
Confidence 46677888888877655443432211 026777777665410 012344568889999999999988
Q ss_pred chhhhcccHHH--HHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHh---hcchHHHHHHhh
Q 015513 219 GLLESTLNLDF--FKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITE---ANAVFELIELEL 280 (405)
Q Consensus 219 ~~~i~~~~~g~--i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~---~g~v~~Lv~lL~ 280 (405)
+..+.....+. +..|+.++.+. +..-+.-++.+|.|+|...+....+.. .+++|.|+--|-
T Consensus 92 R~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 92 RQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 88776222333 67777777777 888888999999999998888877765 467777766665
No 167
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.97 E-value=1 Score=47.49 Aligned_cols=103 Identities=15% Similarity=0.087 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
++..+.+-+++ .|+.+|..|++++..+-.. ..+ ..+++++.+++.++ ++.+|+.|+-|+..+=.-
T Consensus 93 avNti~kDl~d----~N~~iR~~AlR~ls~l~~~----el~----~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~l-- 157 (757)
T COG5096 93 AVNTIQKDLQD----PNEEIRGFALRTLSLLRVK----ELL----GNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRL-- 157 (757)
T ss_pred HHHHHHhhccC----CCHHHHHHHHHHHHhcChH----HHH----HHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhc--
Confidence 56666677776 7888888888887776321 111 25677888888877 788888888888877653
Q ss_pred hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc
Q 015513 262 NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS 300 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~ 300 (405)
.+....+.|.+..+..++.+. ++.+..+|+.+|..+..
T Consensus 158 d~~l~~~~g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 158 DKDLYHELGLIDILKELVADS-DPIVIANALASLAEIDP 195 (757)
T ss_pred CHhhhhcccHHHHHHHHhhCC-CchHHHHHHHHHHHhch
Confidence 344556677888888888774 77888888888887753
No 168
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.95 E-value=0.0056 Score=62.50 Aligned_cols=46 Identities=24% Similarity=0.489 Sum_probs=38.2
Q ss_pred ccCcCCcccCCCcccc---CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTA---ITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~---~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
-.||+|..-+.|-.+. +|+|-||..||..|-.. ..+||+|+..|..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~--aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC--AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh--cccCchhhhhhhe
Confidence 3799999999997755 69999999999999764 4699999988753
No 169
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=94.89 E-value=0.072 Score=41.46 Aligned_cols=63 Identities=8% Similarity=0.058 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcc-CCchhHHHHhhcchHHHHHHhhcC-CCCCcHHHHHHHHHHHhcCHh-hHHHH
Q 015513 246 TKSGLHVLLQACP-MGGNRVKITEANAVFELIELELTK-PEKSTTELIFNLLAQLCSCAD-GRLKF 308 (405)
Q Consensus 246 ~~~a~~aL~~L~~-~~~n~~~~v~~g~v~~Lv~lL~~~-~~~~~~e~a~~~L~~L~~~~~-~~~~i 308 (405)
+...+++|.|||. +..++..+.+.|++|.++..-.-+ .++-++|.|+.++.+|+.... ++..+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5667889999998 567999999999999999886543 246799999999999997654 55544
No 170
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.85 E-value=0.73 Score=45.38 Aligned_cols=140 Identities=12% Similarity=0.184 Sum_probs=98.1
Q ss_pred HHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhc----cchhhhcccHHHHHHHHHHHhhc------CChHHHHHHHHHHHH
Q 015513 186 LMWVLQWENNDRHVAVKTSAMIVLKMVLELAS----KGLLESTLNLDFFKEMVKLLKEN------ISQQATKSGLHVLLQ 255 (405)
Q Consensus 186 Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~----~~~~i~~~~~g~i~~Lv~lL~~~------~~~~~~~~a~~aL~~ 255 (405)
+..++.. .+.+.|-.|......+...++ +++.+. ++-+.+-+=+||.++ .+.--+..+...|..
T Consensus 16 ~~~L~~~----k~D~e~fAaLllVTK~vK~~Di~a~~kk~vf--eAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLac 89 (698)
T KOG2611|consen 16 CLKLLKG----KRDEERFAALLLVTKFVKNDDIVALNKKLVF--EAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLAC 89 (698)
T ss_pred HHHHhcc----cChHHHHHHHHHHHHHhcccchhhhhhhhHH--HHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 4444554 667777777777788876654 444454 444567777888753 233456778888888
Q ss_pred hccCCc--hhHHHHhhcchHHHHHHhhcCCCCC------cHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccCh
Q 015513 256 ACPMGG--NRVKITEANAVFELIELELTKPEKS------TTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSP 327 (405)
Q Consensus 256 L~~~~~--n~~~~v~~g~v~~Lv~lL~~~~~~~------~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~ 327 (405)
.|+.++ ....+++ .||.|++.+..+.+++ +.+.+-..|...+..+.|...++. .|+++.+-+ +....+
T Consensus 90 FC~~pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia-~G~~~~~~Q-~y~~~~ 165 (698)
T KOG2611|consen 90 FCRVPELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIA-SGGLRVIAQ-MYELPD 165 (698)
T ss_pred HhCChhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHh-cCchHHHHH-HHhCCC
Confidence 999876 5666664 7999999998764554 788999999999999888888766 689999998 544443
Q ss_pred hhhHHHHH
Q 015513 328 ATNDRAVH 335 (405)
Q Consensus 328 ~~~e~a~~ 335 (405)
-..+.|+.
T Consensus 166 ~~~d~ala 173 (698)
T KOG2611|consen 166 GSHDMALA 173 (698)
T ss_pred CchhHHHH
Confidence 33333333
No 171
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.75 E-value=3.1 Score=37.63 Aligned_cols=214 Identities=14% Similarity=0.110 Sum_probs=133.8
Q ss_pred chHHHHHHHHHhcchhHHHHHHHHHHHHHHhhHHhHHHHH-HhchHHHHHHHHHhhccCCC--------chhHHHHHHHH
Q 015513 91 NKDQVRKLVRDLDSGHLRISTLKKMEALAMENERNRKSLE-EAFVVRALVLFIITSYKGNK--------TTGLEEALRIL 161 (405)
Q Consensus 91 ~~~~i~~lv~~l~~~~~~~~Al~~L~~l~~~~~~~r~~i~-~~g~v~~Lv~lL~~~~~~~~--------~~~~e~A~~~L 161 (405)
..+.+..++-.+.++..+..|+.+|..--+..+.--..+- .-|...+|..-.-+.+..-. ..-..+|+.+|
T Consensus 24 ~~dk~~~~i~~l~~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~Ll 103 (293)
T KOG3036|consen 24 NNDKAYQLILSLVSPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALL 103 (293)
T ss_pred cccchhhHHHHhhCCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHH
Confidence 3455777777777788888888877544332222222222 24666665554433321111 11257888888
Q ss_pred HhcCCCchhhHHhhcccchhHHHHHH-HHHhhhc-CCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhh
Q 015513 162 SLVWSPSNENKALVDHHNQDLIGALM-WVLQWEN-NDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKE 239 (405)
Q Consensus 162 ~~L~~~~~~~~~~i~~~g~~~i~~Lv-~lL~~~~-~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~ 239 (405)
.-++++. +.|....++. ||..+ .+|.... +....-.|-.+.+++..|...++.-....+...+++|-.++.+..
T Consensus 104 QcvASHp-dTr~~FL~A~---iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~ 179 (293)
T KOG3036|consen 104 QCVASHP-DTRRAFLRAH---IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMES 179 (293)
T ss_pred HHHhcCc-chHHHHHHcc---ChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhc
Confidence 8888876 5566666553 55433 4443210 013445788999999999877765443333567999999999999
Q ss_pred cCChHHHHHHHHHHHHhccCCchhHHHHh-h---c----chHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHH
Q 015513 240 NISQQATKSGLHVLLQACPMGGNRVKITE-A---N----AVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFR 309 (405)
Q Consensus 240 ~~~~~~~~~a~~aL~~L~~~~~n~~~~v~-~---g----~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~ 309 (405)
| +...+..|.-.+..+-.++.+-..+.. + - .+--++.-+.+.++..+..+++....+|+..+..|.++.
T Consensus 180 G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~ 256 (293)
T KOG3036|consen 180 G-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALR 256 (293)
T ss_pred c-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8 888888888888888777764333322 1 1 222233333333467788899999999999998888763
No 172
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.73 E-value=0.2 Score=38.77 Aligned_cols=68 Identities=12% Similarity=0.141 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHh--hcchHHHHHHhhcCCCCCcHHHHHHHHHHHh
Q 015513 227 LDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITE--ANAVFELIELELTKPEKSTTELIFNLLAQLC 299 (405)
Q Consensus 227 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~--~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~ 299 (405)
...+++++..+.+. +..+|-.|.++|+|++.... ..+.. ..+++.|.+++.+. ++.+ ..++..|.+|-
T Consensus 26 ~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~-d~~V-r~~a~~Ld~ll 95 (97)
T PF12755_consen 26 DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADP-DENV-RSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCC-chhH-HHHHHHHHHHh
Confidence 46789999999988 99999999999999987433 33332 46888888888774 6664 45567777764
No 173
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.01 Score=39.54 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=35.7
Q ss_pred ccCcCCcccCCCccccCCCCc-ccHHHHHHHHhcCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAITGIS-YDRESIEKWLKTAKDTTCPVTKQPL 55 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~~g~~-~~r~~I~~~~~~~~~~~cP~~~~~~ 55 (405)
--|.||.+--.|.|+--|||. .|..|=.+.|+. .+..||+||.++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA-LHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHc-cCCcCcchhhHH
Confidence 469999999999999999996 566775555554 478999999875
No 174
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.67 E-value=0.59 Score=40.62 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=78.7
Q ss_pred hHHHHHHHHHhcchhHHHHHHHHHHHHHHhhHH-hHHHHHHhchHHHHHHHHHhhccC-----CCchhHHHHHHHHHhcC
Q 015513 92 KDQVRKLVRDLDSGHLRISTLKKMEALAMENER-NRKSLEEAFVVRALVLFIITSYKG-----NKTTGLEEALRILSLVW 165 (405)
Q Consensus 92 ~~~i~~lv~~l~~~~~~~~Al~~L~~l~~~~~~-~r~~i~~~g~v~~Lv~lL~~~~~~-----~~~~~~e~A~~~L~~L~ 165 (405)
......++..+.+.....+.+..|+...+..+. --+.+++.||+..|+.+|...... .+.....+++.+|..|.
T Consensus 65 ~~~p~~~i~~L~~~~~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 65 KSSPEWYIKKLKSRPSTSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp CHHHHHHHHHHTTT--HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHccCccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 345566777776554444677777655554433 245777899999999999654321 12244677888999988
Q ss_pred CCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHH
Q 015513 166 SPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVL 213 (405)
Q Consensus 166 ~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~ 213 (405)
........++...+ .+..++..|.+ .+..++..++.+|..++
T Consensus 145 n~~~G~~~v~~~~~--~v~~i~~~L~s----~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPD--SVNLIALSLDS----PNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSS--HHHHHHHT--T----TSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcH--HHHHHHHHHCC----CCHHHHHHHHHHHHHHH
Confidence 77766566666555 99999999998 88999999999988775
No 175
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=94.49 E-value=2.2 Score=40.88 Aligned_cols=90 Identities=18% Similarity=0.178 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
.++.++..+.+ .+...+..|+..+..+. ...+++.|..+|.+. ++.++..|+.+|..+-
T Consensus 44 ~~~~~~~~l~~----~~~~vr~~aa~~l~~~~------------~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~~---- 102 (335)
T COG1413 44 AADELLKLLED----EDLLVRLSAAVALGELG------------SEEAVPLLRELLSDE-DPRVRDAAADALGELG---- 102 (335)
T ss_pred hHHHHHHHHcC----CCHHHHHHHHHHHhhhc------------hHHHHHHHHHHhcCC-CHHHHHHHHHHHHccC----
Confidence 68888899998 78888999988855542 346789999999998 8888888888654432
Q ss_pred hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHH
Q 015513 262 NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQL 298 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L 298 (405)
..-+++.|++++....+..++..+..+|..+
T Consensus 103 ------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~ 133 (335)
T COG1413 103 ------DPEAVPPLVELLENDENEGVRAAAARALGKL 133 (335)
T ss_pred ------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhc
Confidence 2347899999998533778899999999887
No 176
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=0.23 Score=50.54 Aligned_cols=234 Identities=14% Similarity=0.163 Sum_probs=131.5
Q ss_pred HHHHHHHHHhhccCCCchhHHHHHHH---HHhcCC--Cc--hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHH
Q 015513 135 VRALVLFIITSYKGNKTTGLEEALRI---LSLVWS--PS--NENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMI 207 (405)
Q Consensus 135 v~~Lv~lL~~~~~~~~~~~~e~A~~~---L~~L~~--~~--~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~ 207 (405)
....++.+++.+. .++.+|+.+ ..|..- .+ .+.++... ++...+...++. .+..+|..|+.
T Consensus 236 Y~~A~~~lsD~~e----~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D----~aF~~vC~~v~D----~sl~VRV~AaK 303 (823)
T KOG2259|consen 236 YSRAVKHLSDDYE----DVRKAAVQLVSVWGNRCPAPLERESEEEKLKD----AAFSSVCRAVRD----RSLSVRVEAAK 303 (823)
T ss_pred HHHHHHHhcchHH----HHHHHHHHHHHHHHhcCCCcccchhhhhhhHH----HHHHHHHHHHhc----CceeeeehHHH
Confidence 4445666665432 336666544 444441 11 11222222 266777777776 88889999999
Q ss_pred HHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHh--cc------------CCchhHHHHhhcchH
Q 015513 208 VLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQA--CP------------MGGNRVKITEANAVF 273 (405)
Q Consensus 208 ~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L--~~------------~~~n~~~~v~~g~v~ 273 (405)
+|+.+-...+.-..-. .+ ..+++=++.. ..+.+.......+- ++ .++.-..++..|+=-
T Consensus 304 ~lG~~~~vSee~i~QT-Ld----KKlms~lRRk--r~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACG 376 (823)
T KOG2259|consen 304 ALGEFEQVSEEIIQQT-LD----KKLMSRLRRK--RTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACG 376 (823)
T ss_pred HhchHHHhHHHHHHHH-HH----HHHhhhhhhh--hhcccchHHHHhcCCcccCccccccCchhhccccccccccccccc
Confidence 9988754332211111 11 2222222211 01112222222222 11 112344567788888
Q ss_pred HHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHH
Q 015513 274 ELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEM 353 (405)
Q Consensus 274 ~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~ 353 (405)
++|.-|.+. --++++.|+..+..|+.+.-+.. . .++.-||+++...-...+..|+.+|..|+.+- .
T Consensus 377 A~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA---~--~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l--------~ 442 (823)
T KOG2259|consen 377 ALVHGLEDE-FYEVRRAAVASLCSLATSSPGFA---V--RALDFLVDMFNDEIEVVRLKAIFALTMISVHL--------A 442 (823)
T ss_pred eeeeechHH-HHHHHHHHHHHHHHHHcCCCCcH---H--HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh--------e
Confidence 888877653 45789999999999986433322 2 25667788332223466778888888888652 2
Q ss_pred HhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccCCCCCcchhh------hhhcC
Q 015513 354 LSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWNNSPCIQVYL------LTRYQ 404 (405)
Q Consensus 354 ~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~~~~~~~------~~~~~ 404 (405)
++.--++.++..|. +.+..+|+....+|+..+- .+-.|+.... .++||
T Consensus 443 i~eeql~~il~~L~-D~s~dvRe~l~elL~~~~~--~d~~~i~m~v~~lL~~L~kyP 496 (823)
T KOG2259|consen 443 IREEQLRQILESLE-DRSVDVREALRELLKNARV--SDLECIDMCVAHLLKNLGKYP 496 (823)
T ss_pred ecHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHhhhCC
Confidence 22334667777777 7788999999999886554 2445666543 67887
No 177
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.016 Score=41.54 Aligned_cols=49 Identities=27% Similarity=0.425 Sum_probs=36.4
Q ss_pred CCcccCcCCcccCCC-cccc-CCCCcccHHHHHHHHhcCC-CCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKD-PVTA-ITGISYDRESIEKWLKTAK-DTTCPVTKQPL 55 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~d-Pv~~-~~g~~~~r~~I~~~~~~~~-~~~cP~~~~~~ 55 (405)
|-+-.||-|.-.=.| |.++ -|.|.|-..||.+|..... ...||.||+.+
T Consensus 29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 334467777655555 7776 6999999999999987532 35799999865
No 178
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.33 E-value=3.3 Score=42.27 Aligned_cols=253 Identities=13% Similarity=0.094 Sum_probs=130.6
Q ss_pred HHHHHhcc--hhHHHHHHHHHHHHHHhh--HHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCch--h
Q 015513 97 KLVRDLDS--GHLRISTLKKMEALAMEN--ERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSN--E 170 (405)
Q Consensus 97 ~lv~~l~~--~~~~~~Al~~L~~l~~~~--~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~--~ 170 (405)
.++..|.+ +.++.+|+.....+++-- ..--+.+...|.| |-.-|. ...+++....+.+++.+.+... .
T Consensus 608 tiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lg----e~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 608 TILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLG----EDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcC----cccHHHHHHHHHHHHHHhhhhcccc
Confidence 34445543 588888888777766521 1112334445544 223332 2223444555555555433211 1
Q ss_pred hHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHH
Q 015513 171 NKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGL 250 (405)
Q Consensus 171 ~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 250 (405)
.+.-+ .| .+|.|.-+|++ ....++.+.+..+..++.......-.. .=....=.|+++|++. +.+.+++|.
T Consensus 682 mqpPi--~~--ilP~ltPILrn----kh~Kv~~nti~lvg~I~~~~peyi~~r-EWMRIcfeLvd~Lks~-nKeiRR~A~ 751 (975)
T COG5181 682 MQPPI--SG--ILPSLTPILRN----KHQKVVANTIALVGTICMNSPEYIGVR-EWMRICFELVDSLKSW-NKEIRRNAT 751 (975)
T ss_pred cCCch--hh--ccccccHhhhh----hhHHHhhhHHHHHHHHHhcCcccCCHH-HHHHHHHHHHHHHHHh-hHHHHHhhh
Confidence 11122 24 89999999998 788899999999999987765432111 0012344689999988 889999999
Q ss_pred HHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhccc---chHHHHHHHHccCh
Q 015513 251 HVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAG---AIAMVTKRLLRVSP 327 (405)
Q Consensus 251 ~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g---~i~~Lv~~l~~~s~ 327 (405)
.++..++.- +.-..++..|++-|... +...+-...-+++..+ +..| .+|.|+. .+..
T Consensus 752 ~tfG~Is~a------iGPqdvL~~LlnnLkvq-eRq~RvctsvaI~iVa----------e~cgpfsVlP~lm~---dY~T 811 (975)
T COG5181 752 ETFGCISRA------IGPQDVLDILLNNLKVQ-ERQQRVCTSVAISIVA----------EYCGPFSVLPTLMS---DYET 811 (975)
T ss_pred hhhhhHHhh------cCHHHHHHHHHhcchHH-HHHhhhhhhhhhhhhH----------hhcCchhhHHHHHh---cccC
Confidence 998877752 11223444455544432 2111111111111111 1112 2344333 3322
Q ss_pred hhhHHHHHHHHHhcccCCCHHHHHHHH-h-cChHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 328 ATNDRAVHILSSISKFSATYEVVLEML-S-VGAVSKLCMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 328 ~~~e~a~~~L~~L~~~~~~~~~~~~~~-~-~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
...-..-++|.++|.... -...+- + .-.+.+|+.-.-.+.++..|+-|..+++-+.-+
T Consensus 812 Pe~nVQnGvLkam~fmFe---yig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 812 PEANVQNGVLKAMCFMFE---YIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred chhHHHHhHHHHHHHHHH---HHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence 222333466777765422 111111 1 123444443333356777888888887766553
No 179
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.27 E-value=4.4 Score=42.36 Aligned_cols=258 Identities=13% Similarity=0.067 Sum_probs=148.8
Q ss_pred chhHHHHHHHHHHHHHHh------hHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCch-hhHHhhc
Q 015513 104 SGHLRISTLKKMEALAME------NERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSN-ENKALVD 176 (405)
Q Consensus 104 ~~~~~~~Al~~L~~l~~~------~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~-~~~~~i~ 176 (405)
+..+|..|+.+|.+-... ++..|..|.+ .....-. ..+.+.+..|+..|..+..-.. -....+.
T Consensus 187 s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMq-----vvcEatq----~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~ 257 (859)
T KOG1241|consen 187 SAAVRLAALNALYNSLEFTKANFNNEMERNYIMQ-----VVCEATQ----SPDEEIQVAAFQCLVKIMSLYYEFMEPYME 257 (859)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhccHhhhceeee-----eeeeccc----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348888888888765442 2222322221 1122212 2234557777777777653221 1233332
Q ss_pred ccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhcc-----ch--hhh----------cccHHHHHHHHHHHhh
Q 015513 177 HHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASK-----GL--LES----------TLNLDFFKEMVKLLKE 239 (405)
Q Consensus 177 ~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~-----~~--~i~----------~~~~g~i~~Lv~lL~~ 239 (405)
+. ....-+.-.++ .+.++...|+..=.+++.++-. .. .-. ..-.+++|.|+++|..
T Consensus 258 ~a---lfaitl~amks----~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~k 330 (859)
T KOG1241|consen 258 QA---LFAITLAAMKS----DNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTK 330 (859)
T ss_pred HH---HHHHHHHHHcC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHh
Confidence 21 23333344555 7888888887776666654311 00 000 0113678888888854
Q ss_pred c------CChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcC---CCCCcHHHHHHHHHHHhcCHhh-HHHHH
Q 015513 240 N------ISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTK---PEKSTTELIFNLLAQLCSCADG-RLKFR 309 (405)
Q Consensus 240 ~------~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~---~~~~~~e~a~~~L~~L~~~~~~-~~~i~ 309 (405)
. .+....++|..+|.-++. .++...||+.+..+... ++-.-++.|+.++...-..++. +..-+
T Consensus 331 qde~~d~DdWnp~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~i 403 (859)
T KOG1241|consen 331 QDEDDDDDDWNPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPI 403 (859)
T ss_pred CCCCcccccCcHHHHHHHHHHHHHH-------HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHH
Confidence 1 244566677777655553 23344556666655432 2556688888898888766553 22222
Q ss_pred hcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 310 EHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 310 ~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
. .+++|.++.++...+--.++.+...|..++.+.++. ......-.+.++.++.-|.. .++.-.++.+.+-.|.++
T Consensus 404 V-~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~-~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 404 V-IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEA-IINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEA 478 (859)
T ss_pred H-hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhh-cccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHH
Confidence 3 468999999555344466788888888888876642 44555556777777777763 567777777777777764
No 180
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.24 E-value=4.7 Score=43.23 Aligned_cols=78 Identities=18% Similarity=0.107 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHHhhc-------CCh--------HHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHH
Q 015513 226 NLDFFKEMVKLLKEN-------ISQ--------QATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTEL 290 (405)
Q Consensus 226 ~~g~i~~Lv~lL~~~-------~~~--------~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~ 290 (405)
+.|++...++.|... .++ +....+++.|..|+..+.....++..+.+|.+-.|=...++..+-..
T Consensus 317 ~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~~lH~LEqvss~~~IGsl 396 (802)
T PF13764_consen 317 ESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLARGHEPTQLLIAEQLLPLLHRLEQVSSEEHIGSL 396 (802)
T ss_pred HhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHhhcCCCccchHHH
Confidence 567777777776542 122 23456778888888877655555667777444443322224555556
Q ss_pred HHHHHHHHhcCHh
Q 015513 291 IFNLLAQLCSCAD 303 (405)
Q Consensus 291 a~~~L~~L~~~~~ 303 (405)
|=.+|..|+.+++
T Consensus 397 AEnlLeal~~~~~ 409 (802)
T PF13764_consen 397 AENLLEALAENED 409 (802)
T ss_pred HHHHHHHHhcChh
Confidence 6666666665443
No 181
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=6.5 Score=41.37 Aligned_cols=172 Identities=17% Similarity=0.191 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCc--hhHHHHHHHHHhcCCCchhhHHhhcccchhHH
Q 015513 106 HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKT--TGLEEALRILSLVWSPSNENKALVDHHNQDLI 183 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~--~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i 183 (405)
=.|.+.|+.|+.+-..+++..+.+-+ .|.++....+...+. ....+++..+..+-... ..+.. ++
T Consensus 249 FLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~GnAILYE~V~TI~~I~~~~-~Lrvl-------ai 315 (866)
T KOG1062|consen 249 FLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAGNAILYECVRTIMDIRSNS-GLRVL-------AI 315 (866)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccchhHHHHHHHHHHHhccCCc-hHHHH-------HH
Confidence 45677777777776655554444321 223333322211110 12333333333332211 11111 34
Q ss_pred HHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchh
Q 015513 184 GALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNR 263 (405)
Q Consensus 184 ~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~ 263 (405)
..|-++|.+ .+..+|.-|...|..+...+.+..+-- =..+++.|+++ |...++.|++.++.|. +..|.
T Consensus 316 niLgkFL~n----~d~NirYvaLn~L~r~V~~d~~avqrH------r~tIleCL~Dp-D~SIkrralELs~~lv-n~~Nv 383 (866)
T KOG1062|consen 316 NILGKFLLN----RDNNIRYVALNMLLRVVQQDPTAVQRH------RSTILECLKDP-DVSIKRRALELSYALV-NESNV 383 (866)
T ss_pred HHHHHHhcC----CccceeeeehhhHHhhhcCCcHHHHHH------HHHHHHHhcCC-cHHHHHHHHHHHHHHh-ccccH
Confidence 444455554 555566666666666554443322111 13477888888 8999999999999887 45677
Q ss_pred HHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc--CHhhHHHH
Q 015513 264 VKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS--CADGRLKF 308 (405)
Q Consensus 264 ~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~--~~~~~~~i 308 (405)
..|++. |++.|... +++.+...+.-+..++. .+++++-|
T Consensus 384 ~~mv~e-----Ll~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~i 424 (866)
T KOG1062|consen 384 RVMVKE-----LLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHI 424 (866)
T ss_pred HHHHHH-----HHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHH
Confidence 777654 78888775 88889998888888885 35566643
No 182
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.14 E-value=1.7 Score=37.63 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=70.9
Q ss_pred cHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHH
Q 015513 198 HVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIE 277 (405)
Q Consensus 198 ~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~ 277 (405)
++.+|.+++.++..|+..-.+ ++ ...++.+...|+++ ++.+|+.|+.+|..|-..+--+.. ...+..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~v---e~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---LV---EPYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKVK---GQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---HH---HhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHH
Confidence 467889999999999875542 11 36788999999998 999999999999999876432221 223466777
Q ss_pred HhhcCCCCCcHHHHHHHHHHHhcC
Q 015513 278 LELTKPEKSTTELIFNLLAQLCSC 301 (405)
Q Consensus 278 lL~~~~~~~~~e~a~~~L~~L~~~ 301 (405)
++.+. ++.++..|...+..+...
T Consensus 71 ~l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHh
Confidence 77664 788999999999998754
No 183
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.037 Score=50.43 Aligned_cols=46 Identities=15% Similarity=0.290 Sum_probs=37.6
Q ss_pred cCcCCc-ccCCCcc----ccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 11 ICPISL-QIMKDPV----TAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 11 ~Cpi~~-~~m~dPv----~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.||+|+ +.+..|- +-+|||+.|.+|...-|..+ ...||.|+..+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g-~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLG-PAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcC-CCCCCcccchhhh
Confidence 499998 6677775 23899999999999999874 7889999987754
No 184
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=0.032 Score=52.01 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=39.9
Q ss_pred CcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
++-.||||.----..|..||||.-|+.||.+++-+ ...|-.|+....
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN--~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN--CKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc--CCeeeEecceee
Confidence 56789999988888889999999999999999865 467888876543
No 185
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.92 E-value=6.2 Score=40.99 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=65.6
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
++..|-.+|++ ....+|.-|...+..|++.......+ +.- ...++..|+...|..+++.|+..||.+|.. +
T Consensus 330 ~~~~Lg~fls~----rE~NiRYLaLEsm~~L~ss~~s~dav---K~h-~d~Ii~sLkterDvSirrravDLLY~mcD~-~ 400 (938)
T KOG1077|consen 330 AVNQLGQFLSH----RETNIRYLALESMCKLASSEFSIDAV---KKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDV-S 400 (938)
T ss_pred HHHHHHHHhhc----ccccchhhhHHHHHHHHhccchHHHH---HHH-HHHHHHHhccccchHHHHHHHHHHHHHhch-h
Confidence 34444455554 44555555555555555543222211 212 566777888555889999999999999954 5
Q ss_pred hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc
Q 015513 262 NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS 300 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~ 300 (405)
|.+.+|+. |+..|.+. +..++|+.+-=.+.|+.
T Consensus 401 Nak~IV~e-----lLqYL~tA-d~sireeivlKvAILaE 433 (938)
T KOG1077|consen 401 NAKQIVAE-----LLQYLETA-DYSIREEIVLKVAILAE 433 (938)
T ss_pred hHHHHHHH-----HHHHHhhc-chHHHHHHHHHHHHHHH
Confidence 77777653 66667664 77788887766666664
No 186
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.92 E-value=0.36 Score=38.66 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 015513 181 DLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQAC 257 (405)
Q Consensus 181 ~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~ 257 (405)
..+..|+.+|..+ .++....-|+.-|+.+....+..+.+. ...|+=..+++|+.++ +++++..|+.++..|-
T Consensus 43 ~llk~L~~lL~~s---~d~~~laVac~Dig~~vr~~p~gr~ii-~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKS---DDPTTLAVACHDIGEFVRHYPNGRNII-EKLGAKERVMELMNHE-DPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SH---HHHHHHHHHHHHHHHHHHH-GGGHHHH-HHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC---CCcceeehhhcchHHHHHHChhHHHHH-HhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 4788999999541 677788888889999987776666665 5778888899999998 9999999999987764
No 187
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.046 Score=51.71 Aligned_cols=50 Identities=14% Similarity=0.343 Sum_probs=34.9
Q ss_pred CcccCcCCcccCCC---cc-ccCCCCcccHHHHHHHHhcCCC-CCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKD---PV-TAITGISYDRESIEKWLKTAKD-TTCPVTKQPLPR 57 (405)
Q Consensus 8 ~~~~Cpi~~~~m~d---Pv-~~~~g~~~~r~~I~~~~~~~~~-~~cP~~~~~~~~ 57 (405)
-.-.|.||-+.+-. -- +-.|||+|.-.|+.+||+.... ..||+|+-.++.
T Consensus 3 i~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 3 IMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred ccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 34569999554322 11 3359999999999999975422 479999966544
No 188
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.69 E-value=1.8 Score=43.45 Aligned_cols=167 Identities=13% Similarity=0.065 Sum_probs=104.9
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHhcc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENI---SQQATKSGLHVLLQACP 258 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~---~~~~~~~a~~aL~~L~~ 258 (405)
....+.+++.+ ++...+..|...|..++.+........ ...++..|.+++.++. +.+.....++++..+-.
T Consensus 84 ~a~~i~e~l~~----~~~~~~~~a~k~l~sls~d~~fa~efi--~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elme 157 (713)
T KOG2999|consen 84 YAKRIMEILTE----GNNISKMEALKELDSLSLDPTFAEEFI--RCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELME 157 (713)
T ss_pred HHHHHHHHHhC----CCcHHHHHHHHHHhhccccHHHHHHHH--hcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh
Confidence 34456677887 777888778888888887766555554 5678899999999873 23444555555544432
Q ss_pred CCchhHHHHhhcchHHHHHHhhcC-CCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHH
Q 015513 259 MGGNRVKITEANAVFELIELELTK-PEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHIL 337 (405)
Q Consensus 259 ~~~n~~~~v~~g~v~~Lv~lL~~~-~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L 337 (405)
..--....+....|...+.+.+-. -+..+-..|+..|.++..+.......+.+.--+..|+..+-......+-.|.+.+
T Consensus 158 hgvvsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~ 237 (713)
T KOG2999|consen 158 HGVVSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALL 237 (713)
T ss_pred hceeeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHH
Confidence 221111112222333333443221 1567889999999999987764333334455788888866555556666788888
Q ss_pred HHhcccCCCHHHHHHHHh
Q 015513 338 SSISKFSATYEVVLEMLS 355 (405)
Q Consensus 338 ~~L~~~~~~~~~~~~~~~ 355 (405)
.++-..+++. -+.+|.+
T Consensus 238 nal~~~a~~~-~R~~~~~ 254 (713)
T KOG2999|consen 238 NALFRKAPDD-KRFEMAK 254 (713)
T ss_pred HHHHhhCChH-HHHHHHH
Confidence 8888777754 5555554
No 189
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=93.53 E-value=0.017 Score=41.76 Aligned_cols=48 Identities=19% Similarity=0.454 Sum_probs=22.7
Q ss_pred cccCcCCcccCC-C---cccc----CCCCcccHHHHHHHHhc--CCC-------CCCCCCCCCCC
Q 015513 9 YFICPISLQIMK-D---PVTA----ITGISYDRESIEKWLKT--AKD-------TTCPVTKQPLP 56 (405)
Q Consensus 9 ~~~Cpi~~~~m~-d---Pv~~----~~g~~~~r~~I~~~~~~--~~~-------~~cP~~~~~~~ 56 (405)
+..|+||...+. + |++. .||++|=..|+.+|+.. +.. ..||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 567999998755 2 5544 48999999999999863 111 24999988763
No 190
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.51 E-value=8.4 Score=42.29 Aligned_cols=219 Identities=13% Similarity=0.103 Sum_probs=112.6
Q ss_pred chhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHH
Q 015513 151 TTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFF 230 (405)
Q Consensus 151 ~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i 230 (405)
...|..+..+|..++... .....+.+ -+..+.+.|..+.+..+...+..+..+|..|-...+.-.... -...|
T Consensus 668 ~~vQkK~yrlL~~l~~~~-s~~~~~~q----~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~--i~k~I 740 (1176)
T KOG1248|consen 668 TKVQKKAYRLLEELSSSP-SGEGLVEQ----RIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL--IPKLI 740 (1176)
T ss_pred HHHHHHHHHHHHHHhcCC-chhhHHHH----HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHH--HHHHH
Confidence 356889999999988763 33333322 233333333221111445566666666666654333111111 12344
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhc------chHHHHHHhhcC--CCC-CcHHHHHHHHHHHhcC
Q 015513 231 KEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEAN------AVFELIELELTK--PEK-STTELIFNLLAQLCSC 301 (405)
Q Consensus 231 ~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g------~v~~Lv~lL~~~--~~~-~~~e~a~~~L~~L~~~ 301 (405)
+.++=.+++. +...++.|..+|..++. .....+.| .|...+..+..+ ++. ......+-++..+..
T Consensus 741 ~EvIL~~Ke~-n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~- 814 (1176)
T KOG1248|consen 741 PEVILSLKEV-NVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ- 814 (1176)
T ss_pred HHHHHhcccc-cHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH-
Confidence 4444444665 88999999999999983 11111122 444445555443 121 111111223333321
Q ss_pred HhhHHHHHhcccchHHHHHH----HHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHH
Q 015513 302 ADGRLKFREHAGAIAMVTKR----LLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDR 377 (405)
Q Consensus 302 ~~~~~~i~~~~g~i~~Lv~~----l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~ 377 (405)
....++. .+.++.+++. |-..+......|++.+..++..-++. .-.-...-.++.++.+++ +.....|.+
T Consensus 815 --e~~~~ld-~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~--~l~~~~~~LL~sll~ls~-d~k~~~r~K 888 (1176)
T KOG1248|consen 815 --EFKNILD-DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE--CLSPHLEELLPSLLALSH-DHKIKVRKK 888 (1176)
T ss_pred --HHhcccc-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH--HHhhhHHHHHHHHHHHHH-hhhHHHHHH
Confidence 2222222 2234444442 22234566778888888887765542 212122235677777666 456778888
Q ss_pred HHHHHHHhhcc
Q 015513 378 AKEILRLHSNV 388 (405)
Q Consensus 378 A~~ll~~l~~~ 388 (405)
.+-+|..|-+-
T Consensus 889 vr~LlekLirk 899 (1176)
T KOG1248|consen 889 VRLLLEKLIRK 899 (1176)
T ss_pred HHHHHHHHHHH
Confidence 88888877663
No 191
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.47 E-value=0.53 Score=36.40 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQA 256 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 256 (405)
.+++++..+.. .+..+|..|+.+|.+++........- .....+..|.+++.+. ++.++. ++..|-+|
T Consensus 28 Il~pVL~~~~D----~d~rVRy~AcEaL~ni~k~~~~~~l~--~f~~IF~~L~kl~~D~-d~~Vr~-~a~~Ld~l 94 (97)
T PF12755_consen 28 ILPPVLKCFDD----QDSRVRYYACEALYNISKVARGEILP--YFNEIFDALCKLSADP-DENVRS-AAELLDRL 94 (97)
T ss_pred HHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcCC-chhHHH-HHHHHHHH
Confidence 78888888887 89999999999999998765433222 2357788889988887 666554 44666554
No 192
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.46 E-value=0.033 Score=58.12 Aligned_cols=46 Identities=17% Similarity=0.410 Sum_probs=38.6
Q ss_pred ccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
+.|++|.+ ..+|++..|||.||+.|+.+.++......||.|+..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 78999999 88888999999999999999987542346999977654
No 193
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.44 E-value=0.14 Score=30.29 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 015513 229 FFKEMVKLLKENISQQATKSGLHVLLQACP 258 (405)
Q Consensus 229 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~ 258 (405)
.+|.+++++.++ ++++|.+|+.+|..++.
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 378899999998 99999999999998875
No 194
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.19 E-value=7.6 Score=36.57 Aligned_cols=223 Identities=13% Similarity=0.059 Sum_probs=134.1
Q ss_pred HHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHH
Q 015513 154 LEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEM 233 (405)
Q Consensus 154 ~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~L 233 (405)
+--|+.+|.++.... +.|.++-... ..-..++.+++.+. |..+.|.+...+++.|.-+......+- -....|.-|
T Consensus 166 rlfav~cl~~l~~~~-e~R~i~waen-tcs~r~~e~l~n~v--g~~qlQY~SL~~iw~lTf~~~~aqdi~-K~~dli~dl 240 (432)
T COG5231 166 RLFAVSCLSNLEFDV-EKRKIEWAEN-TCSRRFMEILQNYV--GVKQLQYNSLIIIWILTFSKECAQDID-KMDDLINDL 240 (432)
T ss_pred HHHHHHHHhhhhhhH-HHHHHHHHHh-hHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHhcCHHHHHHHH-HHHHHHHHH
Confidence 567888888887664 4555543332 25567889998765 788999999999999987665553332 224678888
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhccCC--chhHHHHhhcchHHHHHHhhcCC--CCCcHHHHHH---HHHH----HhcCH
Q 015513 234 VKLLKENISQQATKSGLHVLLQACPMG--GNRVKITEANAVFELIELELTKP--EKSTTELIFN---LLAQ----LCSCA 302 (405)
Q Consensus 234 v~lL~~~~~~~~~~~a~~aL~~L~~~~--~n~~~~v~~g~v~~Lv~lL~~~~--~~~~~e~a~~---~L~~----L~~~~ 302 (405)
+.+.+......+.+-.+..+.|++.-. +....+.-.|-+.+-+++|..+. |++++...-. .|.+ ||..+
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD 320 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 888887656678888899999998722 34445555665666677776542 3333222111 1111 11111
Q ss_pred h------------------------hHHHHHhcc-cchHHHHHHHHccChh--hhHHHHHHHHHhcccCCCHHHHHHHHh
Q 015513 303 D------------------------GRLKFREHA-GAIAMVTKRLLRVSPA--TNDRAVHILSSISKFSATYEVVLEMLS 355 (405)
Q Consensus 303 ~------------------------~~~~i~~~~-g~i~~Lv~~l~~~s~~--~~e~a~~~L~~L~~~~~~~~~~~~~~~ 355 (405)
+ |-..+..+. ..+..|.+ ++..... --..|..=+.++....+ +.+..+..
T Consensus 321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~-~lq~n~~nt~i~vAc~Di~~~Vr~~P--E~~~vl~K 397 (432)
T COG5231 321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKK-YLQSNNPNTWICVACSDIFQLVRASP--EINAVLSK 397 (432)
T ss_pred HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHH-HHhcCCCCceEeeeHhhHHHHHHhCc--hHHHHHHH
Confidence 1 111111111 12223333 2222211 12333344445554444 36777888
Q ss_pred cChHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 015513 356 VGAVSKLCMVTQADCEKYLKDRAKEILRLH 385 (405)
Q Consensus 356 ~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l 385 (405)
-|+=+.++.++. +.++++|-.|-..++.+
T Consensus 398 yg~k~~im~L~n-h~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 398 YGVKEIIMNLIN-HDDDDVKFEALQALQTC 426 (432)
T ss_pred hhhHHHHHHHhc-CCCchhhHHHHHHHHHH
Confidence 999999999997 56889999998888754
No 195
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.13 E-value=0.053 Score=49.85 Aligned_cols=45 Identities=24% Similarity=0.518 Sum_probs=36.4
Q ss_pred cccCcCCcccCCC---ccccCCCCcccHHHHHHHHhcC-CCCCCCCCCC
Q 015513 9 YFICPISLQIMKD---PVTAITGISYDRESIEKWLKTA-KDTTCPVTKQ 53 (405)
Q Consensus 9 ~~~Cpi~~~~m~d---Pv~~~~g~~~~r~~I~~~~~~~-~~~~cP~~~~ 53 (405)
-|+||+..+.-.| ||++.|||.--+.++...-+++ ..+.||-|..
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 4899999988877 9999999999999988876553 1345888854
No 196
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.07 E-value=6.1 Score=41.03 Aligned_cols=216 Identities=11% Similarity=0.071 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCch-hhHHhhcccchhHHHHH
Q 015513 108 RISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSN-ENKALVDHHNQDLIGAL 186 (405)
Q Consensus 108 ~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~-~~~~~i~~~g~~~i~~L 186 (405)
|..||.-|+.+ +.+++ .+-..+-...++.+|.+.+ ..+.-.+..++..|++..+ +.+-.+.. ++..|
T Consensus 166 qkaALclL~L~-r~spD---l~~~~~W~~riv~LL~D~~----~gv~ta~~sLi~~lvk~~p~~yk~~~~~----avs~L 233 (938)
T KOG1077|consen 166 QKAALCLLRLF-RKSPD---LVNPGEWAQRIVHLLDDQH----MGVVTAATSLIEALVKKNPESYKTCLPL----AVSRL 233 (938)
T ss_pred HHHHHHHHHHH-hcCcc---ccChhhHHHHHHHHhCccc----cceeeehHHHHHHHHHcCCHHHhhhHHH----HHHHH
Confidence 33444444444 33332 2223467788888886543 1234566677777765443 33333321 34334
Q ss_pred HHHHhhh---------cCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhc-CCh-----HHHHHHHH
Q 015513 187 MWVLQWE---------NNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKEN-ISQ-----QATKSGLH 251 (405)
Q Consensus 187 v~lL~~~---------~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~-~~~-----~~~~~a~~ 251 (405)
.++.... ++-.++=.+.+.+++|.++-..++...... -..+++.+....+.+ .+. .++.+.+-
T Consensus 234 ~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~--l~evl~~iLnk~~~~~~~k~vq~~na~naVLF 311 (938)
T KOG1077|consen 234 SRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRAR--LNEVLERILNKAQEPPKSKKVQHSNAKNAVLF 311 (938)
T ss_pred HHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHH--HHHHHHHHHhccccCccccchHhhhhHHHHHH
Confidence 3333321 012345567788888887744333322221 123444444444421 111 12222222
Q ss_pred HHHHhccC-CchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHH-ccChhh
Q 015513 252 VLLQACPM-GGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLL-RVSPAT 329 (405)
Q Consensus 252 aL~~L~~~-~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~-~~s~~~ 329 (405)
-..+|+.+ ++....+++ ++..|-.+|... +..++-.|+..+..|+.+.....++-.+ ...++..|. ......
T Consensus 312 eaI~l~~h~D~e~~ll~~--~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~s~davK~h---~d~Ii~sLkterDvSi 385 (938)
T KOG1077|consen 312 EAISLAIHLDSEPELLSR--AVNQLGQFLSHR-ETNIRYLALESMCKLASSEFSIDAVKKH---QDTIINSLKTERDVSI 385 (938)
T ss_pred HHHHHHHHcCCcHHHHHH--HHHHHHHHhhcc-cccchhhhHHHHHHHHhccchHHHHHHH---HHHHHHHhccccchHH
Confidence 23345553 444444443 677888888875 7889999999999999887666666443 345555332 223467
Q ss_pred hHHHHHHHHHhccc
Q 015513 330 NDRAVHILSSISKF 343 (405)
Q Consensus 330 ~e~a~~~L~~L~~~ 343 (405)
+..|+..|+.+|..
T Consensus 386 rrravDLLY~mcD~ 399 (938)
T KOG1077|consen 386 RRRAVDLLYAMCDV 399 (938)
T ss_pred HHHHHHHHHHHhch
Confidence 88999999999964
No 197
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.74 E-value=0.079 Score=49.19 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=32.6
Q ss_pred cCcCCcccCCC----ccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 11 ICPISLQIMKD----PVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 11 ~Cpi~~~~m~d----Pv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.||+|.+.|.- ..-.+||+..||-|...--+. -...||.||..+..
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-lngrcpacrr~y~d 65 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-LNGRCPACRRKYDD 65 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhh-ccCCChHhhhhccc
Confidence 49999999853 223479988888885443332 25689999998754
No 198
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.57 E-value=9.7 Score=36.18 Aligned_cols=191 Identities=13% Similarity=0.094 Sum_probs=97.0
Q ss_pred HHHHHHHhc--chhHHHHHHHHHHHHHHhhHHhHHHHHH---hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCC--
Q 015513 95 VRKLVRDLD--SGHLRISTLKKMEALAMENERNRKSLEE---AFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSP-- 167 (405)
Q Consensus 95 i~~lv~~l~--~~~~~~~Al~~L~~l~~~~~~~r~~i~~---~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~-- 167 (405)
+...+..+. +...|..+|..+..+...... ..+++ .-.+..+.+.++.. +.+++..|+.++..++..
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~--~d~v~~~~~tL~~~~~k~lkkg----~~~E~~lA~~~l~Ll~ltlg 118 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL--PDFVEDRRETLLDALLKSLKKG----KSEEQALAARALALLALTLG 118 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHHhhhcC
Confidence 444444442 357788888888766654322 22222 23455555656533 224456666666555432
Q ss_pred -chhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccc-hhhhcccHHHHHHHHH--HHhhc---
Q 015513 168 -SNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKG-LLESTLNLDFFKEMVK--LLKEN--- 240 (405)
Q Consensus 168 -~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~-~~i~~~~~g~i~~Lv~--lL~~~--- 240 (405)
.++...+.. . ..|.|..++.... .+...|..++.+|.-++-....- ..+. .....++.+.. .++.+
T Consensus 119 ~g~~~~ei~~-~---~~~~L~~~l~d~s--~~~~~R~~~~~aLai~~fv~~~d~~~~~-~~~~~le~if~~~~~~~~~~~ 191 (309)
T PF05004_consen 119 AGEDSEEIFE-E---LKPVLKRILTDSS--ASPKARAACLEALAICTFVGGSDEEETE-ELMESLESIFLLSILKSDGNA 191 (309)
T ss_pred CCccHHHHHH-H---HHHHHHHHHhCCc--cchHHHHHHHHHHHHHHHhhcCChhHHH-HHHHHHHHHHHHHhcCcCCCc
Confidence 122333332 2 6778888887621 34455556665555543221110 0000 00122332211 12221
Q ss_pred ------CChHHHHHHHHHHHHhccC-CchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHh
Q 015513 241 ------ISQQATKSGLHVLLQACPM-GGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLC 299 (405)
Q Consensus 241 ------~~~~~~~~a~~aL~~L~~~-~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~ 299 (405)
.++.+..+|+.+-.-|.+. +.....-.-...+|.|..+|.+. +.+++-.|-.+|+-|-
T Consensus 192 ~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 192 PVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSD-DVDVRIAAGEAIALLY 256 (309)
T ss_pred ccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 1245677777765555543 33222222245799999999985 7787777766666653
No 199
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.56 E-value=1.6 Score=38.34 Aligned_cols=122 Identities=15% Similarity=0.078 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHhccCCchhHHHHh----------------hcchHHHHHHhhcC-----CCCCcHHHHHHHHHHHhcC
Q 015513 243 QQATKSGLHVLLQACPMGGNRVKITE----------------ANAVFELIELELTK-----PEKSTTELIFNLLAQLCSC 301 (405)
Q Consensus 243 ~~~~~~a~~aL~~L~~~~~n~~~~v~----------------~g~v~~Lv~lL~~~-----~~~~~~e~a~~~L~~L~~~ 301 (405)
......++..|.||+..++....+.+ ..++..|++.+..+ +...-....+.+|.|++..
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 34556667777777777666554433 24778888888762 1345678899999999999
Q ss_pred HhhHHHHHhcccchHHHHHHH---HccChhhhHHHHHHHHHhcccCCCHHHHHHHHh---cChHHHHHHHHh
Q 015513 302 ADGRLKFREHAGAIAMVTKRL---LRVSPATNDRAVHILSSISKFSATYEVVLEMLS---VGAVSKLCMVTQ 367 (405)
Q Consensus 302 ~~~~~~i~~~~g~i~~Lv~~l---~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~---~G~v~~Ll~ll~ 367 (405)
+++|.-++....+..++-+++ -..+..-+.-+++++.+.|-... .-..++. .+.++.|+.-|-
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~---~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTD---SHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHh---HHHHhcCchhhhhHHHHHhhcc
Confidence 999999987655554444422 22234456677888888886543 3355554 467777776664
No 200
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.51 E-value=1.4 Score=40.48 Aligned_cols=95 Identities=15% Similarity=0.187 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhcc-CCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHh-cCHhhHHHHHhcccchHHHHHH
Q 015513 244 QATKSGLHVLLQACP-MGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLC-SCADGRLKFREHAGAIAMVTKR 321 (405)
Q Consensus 244 ~~~~~a~~aL~~L~~-~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~-~~~~~~~~i~~~~g~i~~Lv~~ 321 (405)
.....|+..|..+|. +++.|..+.+...+..|+.+|.......++-.++.+|..+. .++.|...+ ++.+|+..+++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~F-E~~~Gl~~v~~- 183 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDF-EELNGLSTVCS- 183 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHH-HHhCCHHHHHH-
Confidence 345668899999997 67789999999999999999965335677777777776654 567777766 66789999999
Q ss_pred HHccChhh---hHHHHHHHHHh
Q 015513 322 LLRVSPAT---NDRAVHILSSI 340 (405)
Q Consensus 322 l~~~s~~~---~e~a~~~L~~L 340 (405)
+++..... +-.++..|+-.
T Consensus 184 llk~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred HHccccccHHHhHHHHHHHHHH
Confidence 44543333 33455555543
No 201
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.38 E-value=0.1 Score=49.28 Aligned_cols=48 Identities=25% Similarity=0.383 Sum_probs=41.9
Q ss_pred cccCcCCcccCCC---ccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 9 YFICPISLQIMKD---PVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 9 ~~~Cpi~~~~m~d---Pv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.+.|.|+++.|.| |++.|.||+|-..+|+.|-..+ ...||.++..+..
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~-~i~dP~~~k~f~~ 380 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDD-GIGDPRTKKVFRY 380 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccC-CCcCCCCCccccH
Confidence 3689999999988 9999999999999999997654 3789999988764
No 202
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.27 E-value=9.8 Score=38.80 Aligned_cols=106 Identities=19% Similarity=0.204 Sum_probs=68.4
Q ss_pred HHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhccc
Q 015513 264 VKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKF 343 (405)
Q Consensus 264 ~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~ 343 (405)
..+| +|.+..++.-+.+. ++.++...+.+|+.+..+-......+. .|-+..|.+.++...+.++-.|+.+|..+-..
T Consensus 86 ~~~V-~~~~~h~lRg~esk-dk~VR~r~lqila~~~d~v~eIDe~l~-N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~ 162 (885)
T COG5218 86 EELV-AGTFYHLLRGTESK-DKKVRKRSLQILALLSDVVREIDEVLA-NGLLEKLSERLFDREKAVRREAVKVLCYYQEM 162 (885)
T ss_pred hHHH-HHHHHHHHhcccCc-chhHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc
Confidence 4444 46777777777664 888999999999998765433333333 35556666655544455555666666555544
Q ss_pred CCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHH
Q 015513 344 SATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAK 379 (405)
Q Consensus 344 ~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~ 379 (405)
..+++++ .+..|+.++|.++++++|+.|-
T Consensus 163 ~~neen~-------~~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 163 ELNEENR-------IVNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred cCChHHH-------HHHHHHHHHhcCcHHHHHHHHH
Confidence 4444333 3457778889999999888753
No 203
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.07 E-value=17 Score=37.95 Aligned_cols=187 Identities=13% Similarity=0.095 Sum_probs=105.6
Q ss_pred HHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhh
Q 015513 94 QVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNEN 171 (405)
Q Consensus 94 ~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~ 171 (405)
.++.|++.|.+ +.++..|...+..|++.+|+|--. .-|.+.++|.... ..+ ..-..+.+..+|+.-.+..
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~-----LAP~ffkllttSs-NNW--mLIKiiKLF~aLtplEPRL 253 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ-----LAPLFYKLLVTSS-NNW--VLIKLLKLFAALTPLEPRL 253 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-----ccHHHHHHHhccC-CCe--ehHHHHHHHhhccccCchh
Confidence 34556666643 466777777777777777766433 2455666665331 222 2455555555565444322
Q ss_pred HHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHH--HHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHH
Q 015513 172 KALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLK--MVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSG 249 (405)
Q Consensus 172 ~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~--~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a 249 (405)
++ +.++++..++.+. ........++.++- +++...++..... .=++..|-.++.+. ++..+=-+
T Consensus 254 ----gK---KLieplt~li~sT---~AmSLlYECvNTVVa~s~s~g~~d~~asi---qLCvqKLr~fieds-DqNLKYlg 319 (877)
T KOG1059|consen 254 ----GK---KLIEPITELMEST---VAMSLLYECVNTVVAVSMSSGMSDHSASI---QLCVQKLRIFIEDS-DQNLKYLG 319 (877)
T ss_pred ----hh---hhhhHHHHHHHhh---HHHHHHHHHHHHheeehhccCCCCcHHHH---HHHHHHHhhhhhcC-CccHHHHH
Confidence 11 2677788877761 11122222222222 1222211111111 23577777788877 88889899
Q ss_pred HHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHH
Q 015513 250 LHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKF 308 (405)
Q Consensus 250 ~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i 308 (405)
+-|++.+...+.- .|.+ --..++..|.+. |+.++-.|+..|..+.. .+|-..|
T Consensus 320 Llam~KI~ktHp~---~Vqa-~kdlIlrcL~Dk-D~SIRlrALdLl~gmVs-kkNl~eI 372 (877)
T KOG1059|consen 320 LLAMSKILKTHPK---AVQA-HKDLILRCLDDK-DESIRLRALDLLYGMVS-KKNLMEI 372 (877)
T ss_pred HHHHHHHhhhCHH---HHHH-hHHHHHHHhccC-CchhHHHHHHHHHHHhh-hhhHHHH
Confidence 9999888874432 2221 124467778775 89999999999999864 3444443
No 204
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=91.99 E-value=1.7 Score=39.88 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHH
Q 015513 107 LRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGAL 186 (405)
Q Consensus 107 ~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~L 186 (405)
....|++.|+-++--++..|..+.+..++..++.+|... ..+.++-.++.+|..+-.+++.+.+...+.+ ++..+
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~---~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~--Gl~~v 181 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPS---NPPAIQSACLDTLVCILLDSPENQRDFEELN--GLSTV 181 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccC---CCchHHHHHHHHHHHHHHcChHHHHHHHHhC--CHHHH
Confidence 355688888888888999999999999999999999432 1234577788877777777778888888887 89999
Q ss_pred HHHHhhhcCCCcHHhHHHHHHHHHHHH
Q 015513 187 MWVLQWENNDRHVAVKTSAMIVLKMVL 213 (405)
Q Consensus 187 v~lL~~~~~~~~~~~~~~A~~~L~~L~ 213 (405)
+.++++.. .+.+++.+.+..|.-..
T Consensus 182 ~~llk~~~--~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 182 CSLLKSKS--TDRELRLKCIEFLYFYL 206 (257)
T ss_pred HHHHcccc--ccHHHhHHHHHHHHHHH
Confidence 99999743 56677777777666443
No 205
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=0.16 Score=47.95 Aligned_cols=64 Identities=20% Similarity=0.291 Sum_probs=48.6
Q ss_pred ccCcCCcccCCC------ccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCC--CC--CCCCcccHHHHHHHHHH
Q 015513 10 FICPISLQIMKD------PVTAITGISYDRESIEKWLKTAKDTTCPVTKQPL--PR--DSGLTSNHTLRRLIQAW 74 (405)
Q Consensus 10 ~~Cpi~~~~m~d------Pv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~--~~--~~~~~~n~~l~~~I~~~ 74 (405)
+.|-||.+.+.. |-++.|||++|..|+.+....+ ...||.||.+. .. ...+..|..+-+.++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~-~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS-RILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCc-eeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 468888877765 8888999999999998887654 66799999883 21 13466778887777765
No 206
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=0.065 Score=53.89 Aligned_cols=60 Identities=23% Similarity=0.395 Sum_probs=40.7
Q ss_pred cccCcCCcccCC----CccccCCCCcccHHHHHHHHhcCCCCCCCCCCCC----CCCCCCCcccHHHHHHHHH
Q 015513 9 YFICPISLQIMK----DPVTAITGISYDRESIEKWLKTAKDTTCPVTKQP----LPRDSGLTSNHTLRRLIQA 73 (405)
Q Consensus 9 ~~~Cpi~~~~m~----dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~----~~~~~~~~~n~~l~~~I~~ 73 (405)
.++|+||...|. .||.+-||||.|+.|.+.-.. .+|| |+.. +...++...|++|-+.+..
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn----~scp-~~~De~~~~~~~~e~p~n~alL~~~~d 78 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN----ASCP-TKRDEDSSLMQLKEEPRNYALLRREHD 78 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh----ccCC-CCccccchhcChhhcchhHHHHHhhcc
Confidence 479999976664 599999999999999998753 4688 3321 1112445567776555433
No 207
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=91.74 E-value=6.3 Score=40.02 Aligned_cols=148 Identities=14% Similarity=0.034 Sum_probs=86.6
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
+...+..+|.+|..+.-..+...+++.+..++...-... .. ...+..|-.+|++. ....+-.|.+.|-.|+...+
T Consensus 261 ~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~-~~---~~~vs~L~~fL~s~-rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 261 ALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQ-FV---DQTVSSLRTFLKST-RVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHH-HH---HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhhCC
Confidence 445555666665522335667788888888876541111 11 24566677777776 66788899999999987554
Q ss_pred hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhc
Q 015513 262 NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSIS 341 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~ 341 (405)
.+....+ +-+=.|+.+. +..+...|..+|..- +..++-..++. .|+.++. ..|+..+-.++.++..||
T Consensus 336 ~kv~vcN----~evEsLIsd~-Nr~IstyAITtLLKT-Gt~e~idrLv~---~I~sfvh---D~SD~FKiI~ida~rsLs 403 (898)
T COG5240 336 QKVSVCN----KEVESLISDE-NRTISTYAITTLLKT-GTEETIDRLVN---LIPSFVH---DMSDGFKIIAIDALRSLS 403 (898)
T ss_pred ceeeecC----hhHHHHhhcc-cccchHHHHHHHHHc-CchhhHHHHHH---HHHHHHH---hhccCceEEeHHHHHHHH
Confidence 4433322 2223344443 566677777776553 33334444332 3455544 446666777777777777
Q ss_pred ccCCC
Q 015513 342 KFSAT 346 (405)
Q Consensus 342 ~~~~~ 346 (405)
...+.
T Consensus 404 l~Fp~ 408 (898)
T COG5240 404 LLFPS 408 (898)
T ss_pred hhCcH
Confidence 76553
No 208
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=91.73 E-value=22 Score=38.35 Aligned_cols=250 Identities=12% Similarity=0.119 Sum_probs=140.3
Q ss_pred HHHHhchHHHHHHHHHhhccCC-CchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCc----HHhH
Q 015513 128 SLEEAFVVRALVLFIITSYKGN-KTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRH----VAVK 202 (405)
Q Consensus 128 ~i~~~g~v~~Lv~lL~~~~~~~-~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~----~~~~ 202 (405)
.+.+.|++..|+.+|.+-.... ..+.....+.+|...+.- ..+|+.+.+.+ +++.|+..|..-...++ .+.-
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~--al~~LL~~L~~~l~~~~~~~~~~i~ 188 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELN--ALNRLLSVLNRALQANQNSSQAEIA 188 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcC--CHHHHHHHHHHHHhCccccccchHH
Confidence 4567899999999997643211 112234444555555554 57888888888 99999988753110123 5666
Q ss_pred HHHHHHHHHHHhhhccchhhh------cc-----cHHHHHHHHHHHhhc---CChHHHHHHHHHHHHhccCCchhHH-HH
Q 015513 203 TSAMIVLKMVLELASKGLLES------TL-----NLDFFKEMVKLLKEN---ISQQATKSGLHVLLQACPMGGNRVK-IT 267 (405)
Q Consensus 203 ~~A~~~L~~L~~~~~~~~~i~------~~-----~~g~i~~Lv~lL~~~---~~~~~~~~a~~aL~~L~~~~~n~~~-~v 267 (405)
+.-..++..|.........-. .. ...-+..|.+.+.+. .++...+..++.|-+|+...+.... ++
T Consensus 189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv 268 (802)
T PF13764_consen 189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV 268 (802)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH
Confidence 777777777755433211110 00 122366666666654 3678889999999999997654443 34
Q ss_pred hhcchHHHHHHhhcCCCC-CcHHHHHHHHHHHhc----CHh---hHHHHHhcccchHHHHHHHHccCh------------
Q 015513 268 EANAVFELIELELTKPEK-STTELIFNLLAQLCS----CAD---GRLKFREHAGAIAMVTKRLLRVSP------------ 327 (405)
Q Consensus 268 ~~g~v~~Lv~lL~~~~~~-~~~e~a~~~L~~L~~----~~~---~~~~i~~~~g~i~~Lv~~l~~~s~------------ 327 (405)
+ -+.+.+++=.-+.+. .--...+..+..++. +.. -|..++. .|.+...++.|....+
T Consensus 269 ~--~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-~GIv~~a~~YL~~~~P~~~~~~s~eWk~ 345 (802)
T PF13764_consen 269 E--HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-SGIVQDAIDYLLKHFPSLKNTDSPEWKE 345 (802)
T ss_pred H--HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hhHHHHHHHHHHHhCcccccCCCHHHHH
Confidence 3 233433422111010 000122333333332 221 2445554 6788888887766422
Q ss_pred ----hhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHH-hccCcHHHHHHHHHHHHHhhc
Q 015513 328 ----ATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVT-QADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 328 ----~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll-~~~~~~~~k~~A~~ll~~l~~ 387 (405)
..-..++..|..|+.... ..+.++..+.+ +++.-| ++.++..+=.-|-.+|..++.
T Consensus 346 ~l~~psLp~iL~lL~GLa~gh~---~tQ~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 346 FLSRPSLPYILRLLRGLARGHE---PTQLLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HhcCCcHHHHHHHHHHHHhcCH---HHHHHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 123567788888887643 34555666777 444444 444344555566666666655
No 209
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=91.36 E-value=1 Score=46.78 Aligned_cols=111 Identities=12% Similarity=0.108 Sum_probs=74.9
Q ss_pred HHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccch--hhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCC
Q 015513 183 IGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGL--LESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMG 260 (405)
Q Consensus 183 i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~--~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~ 260 (405)
+...++.|.+ .++.++++|+.++..|+..-..+. ..+ ...|. .|.+.|... .+++.-..+.||..+....
T Consensus 801 ~stiL~rLnn----ksa~vRqqaadlis~la~Vlktc~ee~~m-~~lGv--vLyEylgee-ypEvLgsILgAikaI~nvi 872 (1172)
T KOG0213|consen 801 CSTILWRLNN----KSAKVRQQAADLISSLAKVLKTCGEEKLM-GHLGV--VLYEYLGEE-YPEVLGSILGAIKAIVNVI 872 (1172)
T ss_pred HHHHHHHhcC----CChhHHHHHHHHHHHHHHHHHhccHHHHH-HHhhH--HHHHhcCcc-cHHHHHHHHHHHHHHHHhc
Confidence 3445566676 899999999999999986544332 112 12332 356666665 7888888888888776533
Q ss_pred chhHHH-HhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCH
Q 015513 261 GNRVKI-TEANAVFELIELELTKPEKSTTELIFNLLAQLCSCA 302 (405)
Q Consensus 261 ~n~~~~-v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~ 302 (405)
.-.+.. =-.|.+|.|..+|++. .+.++++....+..+|...
T Consensus 873 gm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~Iadrg 914 (1172)
T KOG0213|consen 873 GMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRG 914 (1172)
T ss_pred cccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcC
Confidence 211110 1147889999999875 7888999999999988643
No 210
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.31 E-value=17 Score=36.27 Aligned_cols=140 Identities=11% Similarity=0.043 Sum_probs=91.2
Q ss_pred HHHHHHHHHhcCCCch---hhHHhhcccchhHHHHHHHHHhhhc--C-CCcHHhHHHHHHHHHHHHhhhccch--hhhcc
Q 015513 154 LEEALRILSLVWSPSN---ENKALVDHHNQDLIGALMWVLQWEN--N-DRHVAVKTSAMIVLKMVLELASKGL--LESTL 225 (405)
Q Consensus 154 ~e~A~~~L~~L~~~~~---~~~~~i~~~g~~~i~~Lv~lL~~~~--~-~~~~~~~~~A~~~L~~L~~~~~~~~--~i~~~ 225 (405)
+-.|+-....+.++++ -+|+.+-+.- +.+.+-++|+++. + +.+...+.-++.+|...+..++-.. .+.
T Consensus 28 ~fAaLllVTK~vK~~Di~a~~kk~vfeAV--Gf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v-- 103 (698)
T KOG2611|consen 28 RFAALLLVTKFVKNDDIVALNKKLVFEAV--GFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMV-- 103 (698)
T ss_pred HHHHHHHHHHHhcccchhhhhhhhHHHHh--ccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHH--
Confidence 4444444444554432 2455565554 5777778887532 1 1234456778888888887765332 222
Q ss_pred cHHHHHHHHHHHhhcCChH------HHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHh
Q 015513 226 NLDFFKEMVKLLKENISQQ------ATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLC 299 (405)
Q Consensus 226 ~~g~i~~Lv~lL~~~~~~~------~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~ 299 (405)
+.||.|..++..+.+++ +.+.+-.+|+.+++.+.....++..|+++.+-.+-.-.+...-.+.++.++.-+.
T Consensus 104 --~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~ 181 (698)
T KOG2611|consen 104 --SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLV 181 (698)
T ss_pred --HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHH
Confidence 57899999998764555 7889999999999999999999999999999876543211222344555554443
No 211
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.29 E-value=0.14 Score=34.53 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=32.9
Q ss_pred cccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 9 YFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
+..|=.|...=...++++|||.-|+.|-.-+ . -.-||+|+.++..
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---r-YngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---R-YNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh---h-ccCCCCCCCcccC
Confidence 3456667777677889999999999883222 1 3459999999864
No 212
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=91.28 E-value=7.9 Score=41.06 Aligned_cols=94 Identities=21% Similarity=0.233 Sum_probs=71.7
Q ss_pred CCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccH
Q 015513 148 GNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNL 227 (405)
Q Consensus 148 ~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~ 227 (405)
+.+...|..|+..|..+- .++++. ..++++.+++.+ +++.+|..|+.++.++=.-+. ... .+.
T Consensus 103 d~N~~iR~~AlR~ls~l~-----~~el~~----~~~~~ik~~l~d----~~ayVRk~Aalav~kly~ld~--~l~--~~~ 165 (757)
T COG5096 103 DPNEEIRGFALRTLSLLR-----VKELLG----NIIDPIKKLLTD----PHAYVRKTAALAVAKLYRLDK--DLY--HEL 165 (757)
T ss_pred CCCHHHHHHHHHHHHhcC-----hHHHHH----HHHHHHHHHccC----CcHHHHHHHHHHHHHHHhcCH--hhh--hcc
Confidence 444566888888887662 223432 278899999998 899999999999999864432 222 366
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhccC
Q 015513 228 DFFKEMVKLLKENISQQATKSGLHVLLQACPM 259 (405)
Q Consensus 228 g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~ 259 (405)
|.+..+..++.+. +|.+..+|+.+|..+...
T Consensus 166 g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 166 GLIDILKELVADS-DPIVIANALASLAEIDPE 196 (757)
T ss_pred cHHHHHHHHhhCC-CchHHHHHHHHHHHhchh
Confidence 8899999999887 999999999999988754
No 213
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.95 E-value=3.5 Score=36.74 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCch-hHHHHHHHHHhcCCCch-hhHHhhcccchhHH
Q 015513 106 HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTT-GLEEALRILSLVWSPSN-ENKALVDHHNQDLI 183 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~-~~e~A~~~L~~L~~~~~-~~~~~i~~~g~~~i 183 (405)
+....|+..|+-++. .++.|..+.++..--.+-.+|...+++...+ .+-.+++++..|..+++ ..-+.+.... .+
T Consensus 115 nRvcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTe--iv 191 (315)
T COG5209 115 NRVCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTE--IV 191 (315)
T ss_pred hHHHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhh--HH
Confidence 556788888888775 6788888888887777777775443332212 35678888888876553 3344444454 89
Q ss_pred HHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhh------cccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 015513 184 GALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLES------TLNLDFFKEMVKLLKENISQQATKSGLHVLLQAC 257 (405)
Q Consensus 184 ~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~------~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~ 257 (405)
|..+++... ++.-.+.-|+.++..+..++..-.-+. -.-...+..++.-+-+..+....+.+.++-..||
T Consensus 192 PLcLrIme~----gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLs 267 (315)
T COG5209 192 PLCLRIMEL----GSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLS 267 (315)
T ss_pred HHHHHHHHh----hhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeec
Confidence 999999998 788888888888888766654433221 0012234444444433236788899999988999
Q ss_pred cCCchhHHHH
Q 015513 258 PMGGNRVKIT 267 (405)
Q Consensus 258 ~~~~n~~~~v 267 (405)
..++.|..+-
T Consensus 268 d~p~aR~lL~ 277 (315)
T COG5209 268 DKPHARALLS 277 (315)
T ss_pred CCHhHHHHHh
Confidence 8877776553
No 214
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.93 E-value=5.7 Score=40.14 Aligned_cols=186 Identities=17% Similarity=0.141 Sum_probs=111.9
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHH---HHHHHhcc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGL---HVLLQACP 258 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~---~aL~~L~~ 258 (405)
.++.++.-+.+ .+++.|..|..-|..+-.-........ ..|.+..+..++.+......++.+. ..|..+++
T Consensus 251 ~i~vlv~~l~s----s~~~iq~~al~Wi~efV~i~g~~~l~~--~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s 324 (675)
T KOG0212|consen 251 MINVLVPHLQS----SEPEIQLKALTWIQEFVKIPGRDLLLY--LSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS 324 (675)
T ss_pred chhhccccccC----CcHHHHHHHHHHHHHHhcCCCcchhhh--hhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh
Confidence 67888888887 889999999888888765544333333 4577777777776642222333333 23555555
Q ss_pred CCchhHHHHhhc-chHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHH
Q 015513 259 MGGNRVKITEAN-AVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHIL 337 (405)
Q Consensus 259 ~~~n~~~~v~~g-~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L 337 (405)
....... ++.| .+..|-+.++++ ..+.+-.++.-+..|-...-|+.-. -.....+.|.+.|-..|+..-..+..++
T Consensus 325 ~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~~-h~~~if~tLL~tLsd~sd~vvl~~L~ll 401 (675)
T KOG0212|consen 325 SERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLLV-HNDSIFLTLLKTLSDRSDEVVLLALSLL 401 (675)
T ss_pred hhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhhh-hccHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 4443333 4443 566677777664 5566666776666664443344333 2234667888866666778888999999
Q ss_pred HHhcccCCCHHHHHHHHhcChHHHHHHHHhc--cCcHHHHHHHHHHHHHh
Q 015513 338 SSISKFSATYEVVLEMLSVGAVSKLCMVTQA--DCEKYLKDRAKEILRLH 385 (405)
Q Consensus 338 ~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~--~~~~~~k~~A~~ll~~l 385 (405)
..+|+...+. |.++.++.+|+- ....-.+..+.-++|.+
T Consensus 402 a~i~~s~~~~---------~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRql 442 (675)
T KOG0212|consen 402 ASICSSSNSP---------NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQL 442 (675)
T ss_pred HHHhcCcccc---------cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Confidence 9999876553 333333333322 22334555555555543
No 215
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=90.88 E-value=0.74 Score=40.02 Aligned_cols=79 Identities=14% Similarity=0.131 Sum_probs=62.0
Q ss_pred hHHHHhhcchHHHHHHhhcC--------CCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHH
Q 015513 263 RVKITEANAVFELIELELTK--------PEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAV 334 (405)
Q Consensus 263 ~~~~v~~g~v~~Lv~lL~~~--------~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~ 334 (405)
...+++.|++..|+++|..- .+......++..|..|..+..|+..++.+.+++..++..|...+...+..+.
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 45678889999999888641 1224567789999999999999999999999999999977766678888899
Q ss_pred HHHHHhc
Q 015513 335 HILSSIS 341 (405)
Q Consensus 335 ~~L~~L~ 341 (405)
.+|..+|
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988887
No 216
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=90.78 E-value=0.8 Score=33.31 Aligned_cols=67 Identities=12% Similarity=0.038 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhc
Q 015513 202 KTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEAN 270 (405)
Q Consensus 202 ~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g 270 (405)
.+.|.+++.++++.+.....+- +.+.++.++++..+.....+|-.+.-+|.-++.+.+....+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~--~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLD--ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHh--hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 4679999999988766655543 568999999999876678899999999999999988888877665
No 217
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.65 E-value=1.4 Score=44.76 Aligned_cols=152 Identities=13% Similarity=0.105 Sum_probs=91.6
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccch--hhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccC
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGL--LESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPM 259 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~--~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~ 259 (405)
.+...+.+|++ .++.++++|+.+...|+..-.++- ... ...|. .|.+-|... .+++.-..+.|++.+.+.
T Consensus 605 ivStiL~~L~~----k~p~vR~~aadl~~sl~~vlk~c~e~~~l-~klg~--iLyE~lge~-ypEvLgsil~Ai~~I~sv 676 (975)
T COG5181 605 IVSTILKLLRS----KPPDVRIRAADLMGSLAKVLKACGETKEL-AKLGN--ILYENLGED-YPEVLGSILKAICSIYSV 676 (975)
T ss_pred HHHHHHHHhcC----CCccHHHHHHHHHHHHHHHHHhcchHHHH-HHHhH--HHHHhcCcc-cHHHHHHHHHHHHHHhhh
Confidence 45556677887 889999999999888875332111 111 12332 344455554 789988888888888764
Q ss_pred CchhHH-HHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHH
Q 015513 260 GGNRVK-ITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILS 338 (405)
Q Consensus 260 ~~n~~~-~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~ 338 (405)
..-+.. ==-.|.+|.|..+|++. ...+.++....+..+|.......-..+=...--.|++.|.......+..|...+.
T Consensus 677 ~~~~~mqpPi~~ilP~ltPILrnk-h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG 755 (975)
T COG5181 677 HRFRSMQPPISGILPSLTPILRNK-HQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFG 755 (975)
T ss_pred hcccccCCchhhccccccHhhhhh-hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Confidence 432211 01158999999999985 7888899999998888643321111110111223555444444455555665555
Q ss_pred Hhcc
Q 015513 339 SISK 342 (405)
Q Consensus 339 ~L~~ 342 (405)
.++.
T Consensus 756 ~Is~ 759 (975)
T COG5181 756 CISR 759 (975)
T ss_pred hHHh
Confidence 5543
No 218
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.59 E-value=0.5 Score=37.81 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHhccC-CchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHh
Q 015513 227 LDFFKEMVKLLKENISQQATKSGLHVLLQACPM-GGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLC 299 (405)
Q Consensus 227 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~-~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~ 299 (405)
...+..|+++|....++.....|+.=|..++.. +..|..+-+.|+=..+.+++... +.+++..|+.++..|-
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 457899999995543778888888888888884 44555555678888888988875 8899999999987764
No 219
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=90.19 E-value=8.7 Score=33.18 Aligned_cols=109 Identities=17% Similarity=0.098 Sum_probs=75.6
Q ss_pred hHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHH
Q 015513 153 GLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKE 232 (405)
Q Consensus 153 ~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~ 232 (405)
.+.+++-++.-|+..-+ . +++. .++.+...|+. .++.+|..|+.+|..|...+--+. +...+..
T Consensus 4 vR~n~i~~l~DL~~r~~---~-~ve~---~~~~l~~~L~D----~~~~VR~~al~~Ls~Li~~d~ik~-----k~~l~~~ 67 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYP---N-LVEP---YLPNLYKCLRD----EDPLVRKTALLVLSHLILEDMIKV-----KGQLFSR 67 (178)
T ss_pred HHHHHHHHHHHHHHhCc---H-HHHh---HHHHHHHHHCC----CCHHHHHHHHHHHHHHHHcCceee-----hhhhhHH
Confidence 46777788877764432 2 2222 68888888987 899999999999999987643222 3233477
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhc
Q 015513 233 MVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELT 281 (405)
Q Consensus 233 Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~ 281 (405)
++.++.+. +++++..|..++..+.... +...+ ...+|.++.-|..
T Consensus 68 ~l~~l~D~-~~~Ir~~A~~~~~e~~~~~-~~~~i--~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 68 ILKLLVDE-NPEIRSLARSFFSELLKKR-NPNII--YNNFPELISSLNN 112 (178)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHHHHhc-cchHH--HHHHHHHHHHHhC
Confidence 77888777 8999999999999998752 11122 3455666666654
No 220
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=90.09 E-value=2.2 Score=36.20 Aligned_cols=98 Identities=19% Similarity=0.144 Sum_probs=66.4
Q ss_pred CcHHhHHHHHHHHHHHHhh-hccchhhhcccHHHHHHHHHHHh--hcCChHHHHHHHHHHHHhccCCchhHHHHhhcchH
Q 015513 197 RHVAVKTSAMIVLKMVLEL-ASKGLLESTLNLDFFKEMVKLLK--ENISQQATKSGLHVLLQACPMGGNRVKITEANAVF 273 (405)
Q Consensus 197 ~~~~~~~~A~~~L~~L~~~-~~~~~~i~~~~~g~i~~Lv~lL~--~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~ 273 (405)
++.+....+..++..|-.. .+-...+. ...|+++.++.+.. .. +......++++|-.-|.+ +++..++...+++
T Consensus 55 ~~~d~~i~~~~~l~~lfp~~~dv~~~l~-~~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~d-~~~r~~I~~~~~~ 131 (157)
T PF11701_consen 55 GEMDSLIIAFSALTALFPGPPDVGSELF-LSEGFLESLLPLASRKSK-DRKVQKAALELLSAACID-KSCRTFISKNYVS 131 (157)
T ss_dssp HHCCHHHHHHHHHHHHCTTTHHHHHHHC-CTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTTS-HHHHHCCHHHCHH
T ss_pred ccchhHHHHHHHHHHHhCCCHHHHHHHH-hhhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHH
Confidence 4555777788887777432 23333344 46799999999998 44 788888888988766665 4555656667889
Q ss_pred HHHHHhhcCCCCC-cHHHHHHHHHH
Q 015513 274 ELIELELTKPEKS-TTELIFNLLAQ 297 (405)
Q Consensus 274 ~Lv~lL~~~~~~~-~~e~a~~~L~~ 297 (405)
.|-+++....+.. ++..|+-+|..
T Consensus 132 ~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 132 WLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHHccccchHHHHHHHHHHHhc
Confidence 9999996543444 77777766653
No 221
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=90.00 E-value=3.3 Score=35.39 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccC--
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPM-- 259 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~-- 259 (405)
-+..+..+|++ .+...+-.++.++..+....+...... ...-.+..|+.+|+...++..++.+..+|..|...
T Consensus 26 l~~ri~~LL~s----~~~~~rw~G~~Ll~~~~~~~~~e~l~~-~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 26 LVTRINSLLQS----KSAYSRWAGLCLLKVTVEQCSWEILLS-HGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHhCC----CChhhHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 44556677777 788889999988888877643323222 22346888999998876777888888888777542
Q ss_pred --CchhHHHHh---hcchHHHHHHhhcCCCCCcHHHHHHHHHHHh
Q 015513 260 --GGNRVKITE---ANAVFELIELELTKPEKSTTELIFNLLAQLC 299 (405)
Q Consensus 260 --~~n~~~~v~---~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~ 299 (405)
++-.+++.- .+.++.++.++.+ ....+.++.+|..|-
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLL 142 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHH
Confidence 233333332 3456666666643 355677777777664
No 222
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.64 E-value=10 Score=39.68 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=44.0
Q ss_pred HHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCc
Q 015513 95 VRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPS 168 (405)
Q Consensus 95 i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~ 168 (405)
..++.+.+.+ +-.+..+.-.+..+ ...+.+.+.+.|.++.|-+++.+. ++.+..+|+.+|.++...+
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl---~~~~~~~~~~~gl~~~L~~ll~D~----~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKL---FDIDPDLVEDSGLVDALKDLLSDS----NPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHh---hcCChhhccccchhHHHHHHhcCC----CchHHHHHHHHHHHHHHhC
Confidence 3455555543 35555555555444 334556778899999999999733 3355889999999887544
No 223
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.62 E-value=18 Score=38.06 Aligned_cols=222 Identities=11% Similarity=0.073 Sum_probs=123.4
Q ss_pred hHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHH-hcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHH
Q 015513 122 NERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILS-LVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVA 200 (405)
Q Consensus 122 ~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~-~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~ 200 (405)
...-|...++.|+...|.++....+.. ....+..+|. .+....... . ..++.+...+.+ +...-
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~----akl~~~~aL~~~i~f~~~~~------~--~v~~~~~s~~~~---d~~~~ 557 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEE----AKLKWYHALAGKIDFPGERS------Y--EVVKPLDSALHN---DEKGL 557 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchH----HHHHHHHHHhhhcCCCCCch------h--hhhhhhcchhhh---hHHHH
Confidence 334456678899999999998754322 2344444554 222221110 1 145555555554 12222
Q ss_pred hHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc-hhHHHHh-hcchHHHHHH
Q 015513 201 VKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG-NRVKITE-ANAVFELIEL 278 (405)
Q Consensus 201 ~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~-n~~~~v~-~g~v~~Lv~l 278 (405)
..-.+..++.||++.+++.+.-+ ...-+++.+-.++... ++..+.+++..+.||..++. ....+++ ...++.....
T Consensus 558 en~E~L~altnLas~s~s~r~~i-~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~ 635 (748)
T KOG4151|consen 558 ENFEALEALTNLASISESDRQKI-LKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLN 635 (748)
T ss_pred HHHHHHHHhhcccCcchhhHHHH-HHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHH
Confidence 23567778888987665443333 3444444444445554 78899999999999998775 3444555 3455555555
Q ss_pred hhcCCCCCcHHHHHHHHHHHhcCHhhHHH-HHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcC
Q 015513 279 ELTKPEKSTTELIFNLLAQLCSCADGRLK-FREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVG 357 (405)
Q Consensus 279 L~~~~~~~~~e~a~~~L~~L~~~~~~~~~-i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G 357 (405)
+.. .++...-.+++++..+....++.-. +.....+...++..+.......+...+....++.. ...+....++...
T Consensus 636 ~e~-~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~--~~~ei~~~~~~~~ 712 (748)
T KOG4151|consen 636 LEV-ADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE--ALFEIAEKIFETE 712 (748)
T ss_pred HHh-hhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH--HHHHHHHHhccch
Confidence 544 2555556666677655544443322 33334466677775555555666665555555442 2234555555555
Q ss_pred hHHHHH
Q 015513 358 AVSKLC 363 (405)
Q Consensus 358 ~v~~Ll 363 (405)
.++.+.
T Consensus 713 ~~~~l~ 718 (748)
T KOG4151|consen 713 VMELLS 718 (748)
T ss_pred HHHHHH
Confidence 444443
No 224
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=89.48 E-value=0.18 Score=34.29 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=23.7
Q ss_pred CcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQP 54 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~ 54 (405)
+.|.||.|++-|... .+.+.+.++...+.....||+|...
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchhh
Confidence 469999999843322 2334444444433224679999653
No 225
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.47 E-value=0.26 Score=37.66 Aligned_cols=27 Identities=26% Similarity=0.721 Sum_probs=23.3
Q ss_pred CCCCcccHHHHHHHHhcCCCCCCCCCCCC
Q 015513 26 ITGISYDRESIEKWLKTAKDTTCPVTKQP 54 (405)
Q Consensus 26 ~~g~~~~r~~I~~~~~~~~~~~cP~~~~~ 54 (405)
.|+|.|--.||.+|++. ...||.+.++
T Consensus 80 ~CNHaFH~hCisrWlkt--r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT--RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh--cCcCCCcCcc
Confidence 59999999999999986 4689998764
No 226
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=89.43 E-value=20 Score=34.09 Aligned_cols=192 Identities=14% Similarity=0.068 Sum_probs=104.3
Q ss_pred HHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccC---
Q 015513 183 IGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPM--- 259 (405)
Q Consensus 183 i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~--- 259 (405)
+...+..+.. .+...|+.|...|..+....-....+.....-.+..+.+.++.+ +.+-+..|++++.-|+..
T Consensus 45 L~~~Id~l~e----K~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 45 LKEAIDLLTE----KSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHh----cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCC
Confidence 3344445554 67888999999888876544322222101234567777778777 445666777777766654
Q ss_pred CchhHHHHhhcchHHHHHHhhcCCCCC--cHHHHHHHHHHHhc---C-HhhHHHHHhcccchHHHHHHH-HccCh-----
Q 015513 260 GGNRVKITEANAVFELIELELTKPEKS--TTELIFNLLAQLCS---C-ADGRLKFREHAGAIAMVTKRL-LRVSP----- 327 (405)
Q Consensus 260 ~~n~~~~v~~g~v~~Lv~lL~~~~~~~--~~e~a~~~L~~L~~---~-~~~~~~i~~~~g~i~~Lv~~l-~~~s~----- 327 (405)
.+....+.+ ...|+|...+.++ +.. ++..++.+|+.++- . .+.-...++ .+..+.... .....
T Consensus 120 g~~~~ei~~-~~~~~L~~~l~d~-s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~---~le~if~~~~~~~~~~~~~~ 194 (309)
T PF05004_consen 120 GEDSEEIFE-ELKPVLKRILTDS-SASPKARAACLEALAICTFVGGSDEEETEELME---SLESIFLLSILKSDGNAPVV 194 (309)
T ss_pred CccHHHHHH-HHHHHHHHHHhCC-ccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH---HHHHHHHHHhcCcCCCcccc
Confidence 234445554 5889999999876 333 33445555655542 1 112221111 122111101 11111
Q ss_pred ------hhhHH---HHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccC
Q 015513 328 ------ATNDR---AVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWN 390 (405)
Q Consensus 328 ------~~~e~---a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~ 390 (405)
...-. +++.|..++ +.. ...... ...++.|..+|++ ++..+|-.|.+.|.++-+..+
T Consensus 195 ~~~~~~~l~~aAL~aW~lLlt~~---~~~-~~~~~~-~~~~~~l~~lL~s-~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 195 AAEDDAALVAAALSAWALLLTTL---PDS-KLEDLL-EEALPALSELLDS-DDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred cCCCccHHHHHHHHHHHHHHhcC---CHH-HHHHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhh
Confidence 11112 233333222 222 222333 3468999999995 478899999999988866544
No 227
>PF04641 Rtf2: Rtf2 RING-finger
Probab=89.39 E-value=0.29 Score=45.32 Aligned_cols=36 Identities=28% Similarity=0.565 Sum_probs=32.4
Q ss_pred CCcccCcCCcccCCCcccc-CCCCcccHHHHHHHHhc
Q 015513 7 PQYFICPISLQIMKDPVTA-ITGISYDRESIEKWLKT 42 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~ 42 (405)
-.|+.|+|+++.|++||+. .-|+-|.+..|-+|+-.
T Consensus 32 ~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~ 68 (260)
T PF04641_consen 32 ARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLD 68 (260)
T ss_pred CCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHh
Confidence 4578999999999999977 59999999999999864
No 228
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.37 E-value=1 Score=26.54 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=24.6
Q ss_pred HHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHh
Q 015513 183 IGALMWVLQWENNDRHVAVKTSAMIVLKMVLE 214 (405)
Q Consensus 183 i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~ 214 (405)
+|.++++++. .++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D----~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLND----PSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-----SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC----CCHHHHHHHHHHHHHHHh
Confidence 6888899998 899999999999999875
No 229
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=89.23 E-value=37 Score=36.90 Aligned_cols=150 Identities=17% Similarity=0.215 Sum_probs=92.3
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
.+|.|-..+++ +.+..+..++.+++.....+..+.... -...|.....+++++ +.++++.|+.++-..+-
T Consensus 967 LlpkL~~~~~S----~a~~~rs~vvsavKfsisd~p~~id~~--lk~~ig~fl~~~~dp-Dl~VrrvaLvv~nSaah--- 1036 (1233)
T KOG1824|consen 967 LLPKLKLLLRS----EASNTRSSVVSAVKFSISDQPQPIDPL--LKQQIGDFLKLLRDP-DLEVRRVALVVLNSAAH--- 1036 (1233)
T ss_pred HHHHHHHHhcC----CCcchhhhhhheeeeeecCCCCccCHH--HHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHc---
Confidence 55667777777 777888888888777655554444333 236788889999998 99999999999877775
Q ss_pred hhHHHHhhcchHHHHHHhhc--------------CC-----C--CCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHH
Q 015513 262 NRVKITEANAVFELIELELT--------------KP-----E--KSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTK 320 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~--------------~~-----~--~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ 320 (405)
||..++. +..|-|+..|-+ |+ | -+++..|..+++.|......+.-+.. .+..+..
T Consensus 1037 NKpslIr-DllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~---Fl~~~~~ 1112 (1233)
T KOG1824|consen 1037 NKPSLIR-DLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITE---FLNHVED 1112 (1233)
T ss_pred cCHhHHH-HHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHH---HHHHHHh
Confidence 4444443 466666666532 11 2 25778888888888776666554421 1111111
Q ss_pred HHHccChhhhHHHHHHHHHhcccCCC
Q 015513 321 RLLRVSPATNDRAVHILSSISKFSAT 346 (405)
Q Consensus 321 ~l~~~s~~~~e~a~~~L~~L~~~~~~ 346 (405)
-| ......+-...-.|..|+..+++
T Consensus 1113 GL-~DhydiKmlt~l~l~rLa~lcPs 1137 (1233)
T KOG1824|consen 1113 GL-EDHYDIKMLTFLMLARLADLCPS 1137 (1233)
T ss_pred hc-chhhHHHHHHHHHHHHHHhhCcH
Confidence 01 11123344445555666666664
No 230
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.18 E-value=0.3 Score=46.40 Aligned_cols=45 Identities=33% Similarity=0.623 Sum_probs=36.7
Q ss_pred ccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
..|.+++..|.|||-...|-.|+-..|--|++.. .+=|++++++.
T Consensus 41 ~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~--g~nP~tG~kl~ 85 (518)
T KOG0883|consen 41 NHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKH--GTNPITGQKLD 85 (518)
T ss_pred hhceeccccccCcccccCCcEEeeehhhHHHHHc--CCCCCCCCccc
Confidence 3799999999999999999999999999999753 34455555554
No 231
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=89.12 E-value=24 Score=34.61 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=76.0
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHh-hc--CChHHHHHHHHHHHHhcc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLK-EN--ISQQATKSGLHVLLQACP 258 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~-~~--~~~~~~~~a~~aL~~L~~ 258 (405)
.+..|..++++.. --...+-..|+.++..+...+.....+. .+.|.++.+.+-+. .+ .+.++....-.+|..||.
T Consensus 107 L~~sL~~Il~n~~-~FG~~v~s~a~~ivs~~I~nePT~~~~l-~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 107 LLSSLKHILENPE-VFGPSVFSLAINIVSDFIHNEPTSFSIL-QEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred HHHHHHHHHhCcc-ccchHHHHHHHHHHHHHHhcCCchhHHH-HHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 4555556666410 0134556788888888887777777666 78899999999887 43 467888888899999999
Q ss_pred CCchhHHHHhhcchHHHHHHhhc
Q 015513 259 MGGNRVKITEANAVFELIELELT 281 (405)
Q Consensus 259 ~~~n~~~~v~~g~v~~Lv~lL~~ 281 (405)
|.+..+.+.+.++++.+++++.+
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCC
Confidence 99999999999999999999875
No 232
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=88.97 E-value=0.46 Score=44.62 Aligned_cols=59 Identities=15% Similarity=0.331 Sum_probs=44.8
Q ss_pred CCcccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 015513 7 PQYFICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAW 74 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~ 74 (405)
.+-|-||+|.+.|.-|+.= ..||.-|-.|=.+- ...||.|+.++.. +.+..+++.++..
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~-----~~~CP~Cr~~~g~----~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV-----SNKCPTCRLPIGN----IRCRAMEKVAEAV 105 (299)
T ss_pred hhhccCchhhccCcccceecCCCcEehhhhhhhh-----cccCCcccccccc----HHHHHHHHHHHhc
Confidence 3457899999999999755 57999999994322 3579999998864 3566777777765
No 233
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.93 E-value=0.91 Score=40.86 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHhhc-------chHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHH-HHHhcccch
Q 015513 244 QATKSGLHVLLQACPMGGNRVKITEAN-------AVFELIELELTKPEKSTTELIFNLLAQLCSCADGRL-KFREHAGAI 315 (405)
Q Consensus 244 ~~~~~a~~aL~~L~~~~~n~~~~v~~g-------~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~-~i~~~~g~i 315 (405)
.-++-|+++|..||-.+.|...+..-+ .+..|+++|....+...+|.|+.+|.+||...+.-. .+....+.|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 457899999999999888877666533 556677777665567889999999999998666433 455567899
Q ss_pred HHHHHHHH
Q 015513 316 AMVTKRLL 323 (405)
Q Consensus 316 ~~Lv~~l~ 323 (405)
..|+..|-
T Consensus 219 ~~Li~FiE 226 (257)
T PF12031_consen 219 SHLIAFIE 226 (257)
T ss_pred HHHHHHHH
Confidence 99998553
No 234
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.89 E-value=1.6 Score=39.34 Aligned_cols=83 Identities=14% Similarity=0.085 Sum_probs=64.8
Q ss_pred HHhHHHHHHHHHHHHhhhccchhhhccc------HHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc--hhHHHHhhc
Q 015513 199 VAVKTSAMIVLKMVLELASKGLLESTLN------LDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG--NRVKITEAN 270 (405)
Q Consensus 199 ~~~~~~A~~~L~~L~~~~~~~~~i~~~~------~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~--n~~~~v~~g 270 (405)
..-|..|..+|.+|+..+.|...+. .+ ...+..|+++|....++-.++-|...|.+|+..++ .+....+.+
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliL-aTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLIL-ATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceee-eCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 4557899999999998888777664 32 13556677777666688999999999999999876 445556789
Q ss_pred chHHHHHHhhcC
Q 015513 271 AVFELIELELTK 282 (405)
Q Consensus 271 ~v~~Lv~lL~~~ 282 (405)
+|..|+..+.+.
T Consensus 217 ~i~~Li~FiE~a 228 (257)
T PF12031_consen 217 CISHLIAFIEDA 228 (257)
T ss_pred hHHHHHHHHHHH
Confidence 999999999763
No 235
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.66 E-value=3.3 Score=43.18 Aligned_cols=105 Identities=9% Similarity=0.038 Sum_probs=78.6
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
++..++.=-.. .++..|..|.+++..+-... + ..-.+.+|.+.++++ ++.+++.++-.+..+= ..
T Consensus 87 avnt~~kD~~d----~np~iR~lAlrtm~~l~v~~-----i---~ey~~~Pl~~~l~d~-~~yvRktaa~~vakl~--~~ 151 (734)
T KOG1061|consen 87 AVNTFLKDCED----PNPLIRALALRTMGCLRVDK-----I---TEYLCDPLLKCLKDD-DPYVRKTAAVCVAKLF--DI 151 (734)
T ss_pred hhhhhhccCCC----CCHHHHHHHhhceeeEeehH-----H---HHHHHHHHHHhccCC-ChhHHHHHHHHHHHhh--cC
Confidence 55555554444 78888888888877663321 1 235678999999998 8888888877766653 35
Q ss_pred hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCH
Q 015513 262 NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCA 302 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~ 302 (405)
+.....+.|.++.|-.++.+. ++.+..+|+.+|..+....
T Consensus 152 ~~~~~~~~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 152 DPDLVEDSGLVDALKDLLSDS-NPMVVANALAALSEIHESH 191 (734)
T ss_pred ChhhccccchhHHHHHHhcCC-CchHHHHHHHHHHHHHHhC
Confidence 666778899999999999964 7889999999999997644
No 236
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=88.66 E-value=26 Score=37.69 Aligned_cols=227 Identities=18% Similarity=0.159 Sum_probs=140.3
Q ss_pred HHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHH
Q 015513 154 LEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEM 233 (405)
Q Consensus 154 ~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~L 233 (405)
...|.+++...+.....+..++.. .+...++.+.. +..+..+..|++++..-++. ..... .-.+++..|
T Consensus 467 l~Ra~~~i~~fs~~~~~~~~~~~~----fl~~~v~~l~~---~~~~~~ki~a~~~~~~~~~~---~vl~~-~~p~ild~L 535 (1005)
T KOG2274|consen 467 LLRAFLTISKFSSSTVINPQLLQH----FLNATVNALTM---DVPPPVKISAVRAFCGYCKV---KVLLS-LQPMILDGL 535 (1005)
T ss_pred HHHHHHHHHHHHhhhccchhHHHH----HHHHHHHhhcc---CCCCchhHHHHHHHHhccCc---eeccc-cchHHHHHH
Confidence 345556555444332222222211 34444455543 25566777777777766622 11112 346788888
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcC-CCCCcHHHHHHHHHHHhcCHhhHHHHHhcc
Q 015513 234 VKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTK-PEKSTTELIFNLLAQLCSCADGRLKFREHA 312 (405)
Q Consensus 234 v~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~-~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~ 312 (405)
..+.... +.++...-..+|...++.+.......++-+.|..+.+...- .++-+...+-.++..|+...++..-.. .
T Consensus 536 ~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~--e 612 (1005)
T KOG2274|consen 536 LQLASKS-SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ--E 612 (1005)
T ss_pred HHHcccc-cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH--H
Confidence 8887765 77888888899999999887777777888888888876543 256677777777777775433333221 2
Q ss_pred cchHHHHHHHHccC----hhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 313 GAIAMVTKRLLRVS----PATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 313 g~i~~Lv~~l~~~s----~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
..||.|+..|.... ......++.+|..+-+..+.+ .-+.++. -+++++....-...+..+-+.|-+.|+.+-.+
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~p-L~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSP-LPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCC-ccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 47999999543332 233556777777777766654 3333333 46777776663334667788899999977765
Q ss_pred -------cCCCCCcc
Q 015513 389 -------WNNSPCIQ 396 (405)
Q Consensus 389 -------~~~~~~~~ 396 (405)
|.++|.+.
T Consensus 691 ~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 691 TLEQLLTWHDEPGHN 705 (1005)
T ss_pred CHHHHHhhccCCCcc
Confidence 55555444
No 237
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.58 E-value=0.27 Score=46.41 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=36.8
Q ss_pred ccCcCCcccCCCccccCCCCc-ccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAITGIS-YDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~~g~~-~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
-.|=||+.--+|=+++||-|. .|..|-+.--- .+..||+||+++..
T Consensus 291 keCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~--q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 291 KECVICLSESRDTVVLPCRHLCLCSGCAKSLRY--QTNNCPICRQPIEE 337 (349)
T ss_pred CeeEEEecCCcceEEecchhhehhHhHHHHHHH--hhcCCCccccchHh
Confidence 579999999999999999998 68888665421 24579999998753
No 238
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.34 E-value=7.8 Score=35.82 Aligned_cols=178 Identities=17% Similarity=0.143 Sum_probs=101.1
Q ss_pred HHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHh-c-hHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCch
Q 015513 94 QVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEA-F-VVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSN 169 (405)
Q Consensus 94 ~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~-g-~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~ 169 (405)
....++..+.. .+.+.-++.-+|.++... ..-..+... + ....+..++...........+--++.++.|+..+..
T Consensus 64 ~~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~ 142 (268)
T PF08324_consen 64 WLILLLKILLSWPPESRFPALDLLRLAALHP-PASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP 142 (268)
T ss_dssp HHHHHHHHHCCS-CCC-HHHHHHHHHHCCCH-CHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhCCCccchhHHhHHHHHHhCc-cHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc
Confidence 34444444433 366777888888776543 333344433 2 355566666544323333446778899999987653
Q ss_pred hhHHhhcccchh-HHHHHHHHHhhhcCCC---cHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHH-hhcCChH
Q 015513 170 ENKALVDHHNQD-LIGALMWVLQWENNDR---HVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLL-KENISQQ 244 (405)
Q Consensus 170 ~~~~~i~~~g~~-~i~~Lv~lL~~~~~~~---~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL-~~~~~~~ 244 (405)
.+..+.... . .+...+..+... . +...+..++.++.|++..-.....-.-.....+..+++.+ ....+++
T Consensus 143 -~~~~~~~~~-~~~i~~~~~~~~~~---~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~E 217 (268)
T PF08324_consen 143 -GRQLLLSHF-DSSILELLSSLLSS---LLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEE 217 (268)
T ss_dssp -CHHHHHCTH-HTCHHHHCHCCCTT---S-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHH
T ss_pred -cHHHHHhcc-cchHHHHHHHHhhc---cccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHH
Confidence 455555443 1 122222222220 2 6778899999999998543322211101223566677743 3335889
Q ss_pred HHHHHHHHHHHhccCCchhHHHHh-hcchHHHHH
Q 015513 245 ATKSGLHVLLQACPMGGNRVKITE-ANAVFELIE 277 (405)
Q Consensus 245 ~~~~a~~aL~~L~~~~~n~~~~v~-~g~v~~Lv~ 277 (405)
+.-.++-||.+|...++......+ .|+-..+-.
T Consensus 218 a~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~ 251 (268)
T PF08324_consen 218 ALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSK 251 (268)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHhccChhHHHHHHHcChHHHHHH
Confidence 999999999999987777666665 344433333
No 239
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.64 E-value=0.61 Score=37.62 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=41.0
Q ss_pred CcccCcCCcccCCCcccc----CCCCcccHHHHHHHHhc-CCCCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKDPVTA----ITGISYDRESIEKWLKT-AKDTTCPVTKQPLPR 57 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~----~~g~~~~r~~I~~~~~~-~~~~~cP~~~~~~~~ 57 (405)
.-+.|-||++.-.|.--+ .||.+-|-.|.-..|+- .-+..||+|+.++.+
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 346899999999997755 49999999999987763 346789999998865
No 240
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=87.57 E-value=19 Score=39.85 Aligned_cols=278 Identities=12% Similarity=0.110 Sum_probs=142.6
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHh-hHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCC----Cchh
Q 015513 96 RKLVRDLDSGHLRISTLKKMEALAME-NERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWS----PSNE 170 (405)
Q Consensus 96 ~~lv~~l~~~~~~~~Al~~L~~l~~~-~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~----~~~~ 170 (405)
.+-++.+...+.+.+|+.-|+.++.. +++++ ---++|-++.++.++. ..++..|+..|..+-. -.+.
T Consensus 428 ts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~----a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 428 TSCIRALKTIQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSE----ADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCch----HHHHHHHHHHHHHHHhhccCCCcc
Confidence 34444556678899999999988863 22322 1245788888887543 2346677765555421 1222
Q ss_pred hHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhh------------------ccc-hhhhcccH----
Q 015513 171 NKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELA------------------SKG-LLESTLNL---- 227 (405)
Q Consensus 171 ~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~------------------~~~-~~i~~~~~---- 227 (405)
...+..+. .+|.|-.++... ....++..=|..|..||... .+. ........
T Consensus 500 daniF~eY---lfP~L~~l~~d~---~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~ 573 (1431)
T KOG1240|consen 500 DANIFPEY---LFPHLNHLLNDS---SAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQ 573 (1431)
T ss_pred cchhhHhh---hhhhhHhhhccC---ccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHH
Confidence 23444443 677777776641 12223322223333332110 011 00000000
Q ss_pred ---HHHH-HHHHHHhhcCChHHHHHHHHHHHHhccCC-chhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCH
Q 015513 228 ---DFFK-EMVKLLKENISQQATKSGLHVLLQACPMG-GNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCA 302 (405)
Q Consensus 228 ---g~i~-~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~-~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~ 302 (405)
..++ ..+.||.++ ++-+++.-+..|.-||..- ..+ .+.=.++.|+-.|.+. |..++..-..-+.-+|..-
T Consensus 574 ~L~~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfLNDk-Dw~LR~aFfdsI~gvsi~V 648 (1431)
T KOG1240|consen 574 ALHHTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGKEK---SNDVILSHLITFLNDK-DWRLRGAFFDSIVGVSIFV 648 (1431)
T ss_pred HHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHhcCc-cHHHHHHHHhhccceEEEE
Confidence 1122 233455544 5677777778877777521 110 1122567788888764 5555544444444443322
Q ss_pred hhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHH
Q 015513 303 DGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEIL 382 (405)
Q Consensus 303 ~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll 382 (405)
.-| .+ +++.+|.|.+-|....+-+-..|+++|..|++..- .+.+.=...++...-+|- ++..=+|+.+..++
T Consensus 649 G~r-s~--seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l----l~K~~v~~i~~~v~PlL~-hPN~WIR~~~~~iI 720 (1431)
T KOG1240|consen 649 GWR-SV--SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL----LRKPAVKDILQDVLPLLC-HPNLWIRRAVLGII 720 (1431)
T ss_pred eee-eH--HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc----cchHHHHHHHHhhhhhee-CchHHHHHHHHHHH
Confidence 212 11 24456666665444445667777888888877532 122111123333444444 56778899998888
Q ss_pred HHhhcccCC--CCCcchhhh
Q 015513 383 RLHSNVWNN--SPCIQVYLL 400 (405)
Q Consensus 383 ~~l~~~~~~--~~~~~~~~~ 400 (405)
-...+.+.. .-|+..++.
T Consensus 721 ~~~~~~ls~advyc~l~P~i 740 (1431)
T KOG1240|consen 721 AAIARQLSAADVYCKLMPLI 740 (1431)
T ss_pred HHHHhhhhhhhheEEeehhh
Confidence 877776643 346655443
No 241
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.81 E-value=3.1 Score=42.71 Aligned_cols=143 Identities=13% Similarity=0.079 Sum_probs=90.8
Q ss_pred HHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHH
Q 015513 128 SLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMI 207 (405)
Q Consensus 128 ~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~ 207 (405)
.|+..|+--++|.=|.+.+ .+++++|+..++.|+.+.+.. .. .++..|+.++.. ....+|..|+.
T Consensus 368 siI~sGACGA~VhGlEDEf----~EVR~AAV~Sl~~La~ssP~F----A~---~aldfLvDMfND----E~~~VRL~ai~ 432 (823)
T KOG2259|consen 368 SIIPSGACGALVHGLEDEF----YEVRRAAVASLCSLATSSPGF----AV---RALDFLVDMFND----EIEVVRLKAIF 432 (823)
T ss_pred ccccccccceeeeechHHH----HHHHHHHHHHHHHHHcCCCCc----HH---HHHHHHHHHhcc----HHHHHHHHHHH
Confidence 3556666666776665433 356999999999998766532 11 278899999887 78889999999
Q ss_pred HHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCc
Q 015513 208 VLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKST 287 (405)
Q Consensus 208 ~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~ 287 (405)
+|..++.+- . ....-++.+.+-|.+. +++++++.-..|.+.=..+.+...+ ++..|++-|.. .+.=
T Consensus 433 aL~~Is~~l------~-i~eeql~~il~~L~D~-s~dvRe~l~elL~~~~~~d~~~i~m----~v~~lL~~L~k--yPqD 498 (823)
T KOG2259|consen 433 ALTMISVHL------A-IREEQLRQILESLEDR-SVDVREALRELLKNARVSDLECIDM----CVAHLLKNLGK--YPQD 498 (823)
T ss_pred HHHHHHHHh------e-ecHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCcHHHHHH----HHHHHHHHhhh--CCCC
Confidence 999998762 2 2456677777888776 7777776666555443334344443 33334444432 1112
Q ss_pred HHHHHHHHHHHh
Q 015513 288 TELIFNLLAQLC 299 (405)
Q Consensus 288 ~e~a~~~L~~L~ 299 (405)
+...+.++..+.
T Consensus 499 rd~i~~cm~~iG 510 (823)
T KOG2259|consen 499 RDEILRCMGRIG 510 (823)
T ss_pred cHHHHHHHHHHh
Confidence 344555555543
No 242
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=86.70 E-value=31 Score=33.12 Aligned_cols=166 Identities=19% Similarity=0.163 Sum_probs=102.8
Q ss_pred HHHHHHHhcch--hHHHHHHHHHHHHHH-hhHHhHHHHHHh--chHHHHHHHHHhhccCCC---------chhHHHHHH-
Q 015513 95 VRKLVRDLDSG--HLRISTLKKMEALAM-ENERNRKSLEEA--FVVRALVLFIITSYKGNK---------TTGLEEALR- 159 (405)
Q Consensus 95 i~~lv~~l~~~--~~~~~Al~~L~~l~~-~~~~~r~~i~~~--g~v~~Lv~lL~~~~~~~~---------~~~~e~A~~- 159 (405)
+..+-+.+++. .....+++-|..++. .+....+.+... -..+.+.+++........ ...|...+.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 44445555543 456678888888887 565555555553 344567777743221110 034666665
Q ss_pred HHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHH-HHhhhc----cchhhhcccHHHHHHHH
Q 015513 160 ILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKM-VLELAS----KGLLESTLNLDFFKEMV 234 (405)
Q Consensus 160 ~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~-L~~~~~----~~~~i~~~~~g~i~~Lv 234 (405)
+|..|...++..+.-+.+.. +.+..+.+-|.. .+.++......+|.. +..+.. .+..+. ....+..|+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~-~~~~~l~k~l~~----D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~f--n~~~L~~l~ 210 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQK-KLMSALFKGLRK----DPPETVILILETLKDKVLKDSSVSRSTKCKLF--NEWTLSQLA 210 (330)
T ss_pred HHHHHccCCHHHHHHHHHcC-chHHHHHhcccC----CCHHHHHHHHHHHHHHhccCCCCChhhhhhhc--CHHHHHHHH
Confidence 44445555555554444443 267777777776 788888888888874 444332 233343 567899999
Q ss_pred HHHhhcCCh----HHHHHHHHHHHHhccCCchhHHHHh
Q 015513 235 KLLKENISQ----QATKSGLHVLLQACPMGGNRVKITE 268 (405)
Q Consensus 235 ~lL~~~~~~----~~~~~a~~aL~~L~~~~~n~~~~v~ 268 (405)
.+.... ++ .+.+.+-..|..+|.++.+-...-+
T Consensus 211 ~Ly~~~-~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d 247 (330)
T PF11707_consen 211 SLYSRD-GEDEKSSVADLVHEFLLALCTDPKHGVCFPD 247 (330)
T ss_pred HHhccc-CCcccchHHHHHHHHHHHHhcCCCcccccCC
Confidence 988765 45 8899999999999987765444333
No 243
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.70 E-value=42 Score=35.25 Aligned_cols=117 Identities=12% Similarity=0.055 Sum_probs=76.0
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
.+..+++-..+ .+..+|.+.+.+|..|.......... +..+..+.|..-|.+. .+.++..|+.+|..+=..+.
T Consensus 86 ~f~hlLRg~Es----kdk~VRfrvlqila~l~d~~~eidd~--vfn~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~ 158 (892)
T KOG2025|consen 86 TFYHLLRGTES----KDKKVRFRVLQILALLSDENAEIDDD--VFNKLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDPK 158 (892)
T ss_pred HHHHHHhcccC----cchhHHHHHHHHHHHHhccccccCHH--HHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCCC
Confidence 56666666666 78889999999999987633222222 2456677776666666 68899999999988874322
Q ss_pred hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcc
Q 015513 262 NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHA 312 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~ 312 (405)
+- +..++..++.+++.+++.+++. ++|.+++-++..+-.|++.+
T Consensus 159 de----e~~v~n~l~~liqnDpS~EVRR---aaLsnI~vdnsTlp~IveRa 202 (892)
T KOG2025|consen 159 DE----ECPVVNLLKDLIQNDPSDEVRR---AALSNISVDNSTLPCIVERA 202 (892)
T ss_pred CC----cccHHHHHHHHHhcCCcHHHHH---HHHHhhccCcccchhHHHHh
Confidence 11 1234566788887765666665 45666666665555554433
No 244
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.57 E-value=0.19 Score=54.86 Aligned_cols=47 Identities=28% Similarity=0.465 Sum_probs=38.8
Q ss_pred CCcccCcCCcccCCCc-cccCCCCcccHHHHHHHHhcCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDP-VTAITGISYDRESIEKWLKTAKDTTCPVTKQPL 55 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dP-v~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~ 55 (405)
-..+.|+||+++|+.- -+.-|||.||..|++-|... +..||.|+...
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~--~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA--SSRCPICKSIK 1198 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH--hccCcchhhhh
Confidence 3457999999999954 46689999999999999975 57899997543
No 245
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=86.18 E-value=6.1 Score=36.52 Aligned_cols=164 Identities=15% Similarity=0.123 Sum_probs=95.8
Q ss_pred HHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHH-HHHH
Q 015513 154 LEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLD-FFKE 232 (405)
Q Consensus 154 ~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g-~i~~ 232 (405)
+--++.+++.+..+.... ..+...+++....+..++....+..+...+.-+++++.|+-.+...+..+. ...+ .+..
T Consensus 80 ~fP~lDLlRl~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~-~~~~~~i~~ 157 (268)
T PF08324_consen 80 RFPALDLLRLAALHPPAS-DLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLL-SHFDSSILE 157 (268)
T ss_dssp -HHHHHHHHHHCCCHCHH-HHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHH-CTHHTCHHH
T ss_pred chhHHhHHHHHHhCccHH-HHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHH-hcccchHHH
Confidence 677888888887765443 344433311244444555432112567778899999999988877777666 3333 2333
Q ss_pred HHHHHhhcC---ChHHHHHHHHHHHHhccCC-chh-HHHHhhcchHHHHHHhhcC-CCCCcHHHHHHHHHHHhcCHhhHH
Q 015513 233 MVKLLKENI---SQQATKSGLHVLLQACPMG-GNR-VKITEANAVFELIELELTK-PEKSTTELIFNLLAQLCSCADGRL 306 (405)
Q Consensus 233 Lv~lL~~~~---~~~~~~~a~~aL~~L~~~~-~n~-~~~v~~g~v~~Lv~lL~~~-~~~~~~e~a~~~L~~L~~~~~~~~ 306 (405)
.+..+.... +..++.+++..++|++..- .++ ..-.....+..+++.+... .+.++.-+++.+|++|...+....
T Consensus 158 ~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~ 237 (268)
T PF08324_consen 158 LLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAK 237 (268)
T ss_dssp HCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHH
Confidence 333222221 5678888999999997622 111 1111223455666644332 367788899999999997666666
Q ss_pred HHHhcccchHHHHH
Q 015513 307 KFREHAGAIAMVTK 320 (405)
Q Consensus 307 ~i~~~~g~i~~Lv~ 320 (405)
...... ++...+.
T Consensus 238 ~~~~~l-~~~~~~~ 250 (268)
T PF08324_consen 238 QLAKSL-DVKSVLS 250 (268)
T ss_dssp HHCCCC-THHHHHH
T ss_pred HHHHHc-ChHHHHH
Confidence 654432 3444433
No 246
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.42 E-value=24 Score=36.21 Aligned_cols=74 Identities=18% Similarity=0.146 Sum_probs=46.9
Q ss_pred CcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccC-CchhHHHHhhcchHHH
Q 015513 197 RHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPM-GGNRVKITEANAVFEL 275 (405)
Q Consensus 197 ~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~-~~n~~~~v~~g~v~~L 275 (405)
++...+.-|+..|-.....-.. ....+|..+++|+.+. +..+|..|.+.|-.+|.. ++...++ +..|
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~------l~~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL 101 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPD------LQEEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVL 101 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GG------GHHHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T--T-HHHH-----HHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChh------hHHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHH
Confidence 5677778888877776543221 2346788888888887 888899999998888884 4555554 4568
Q ss_pred HHHhhcC
Q 015513 276 IELELTK 282 (405)
Q Consensus 276 v~lL~~~ 282 (405)
+.||.+.
T Consensus 102 ~QlL~td 108 (556)
T PF05918_consen 102 VQLLQTD 108 (556)
T ss_dssp HHHTT--
T ss_pred HHHHhcc
Confidence 8888764
No 247
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=85.37 E-value=47 Score=34.05 Aligned_cols=280 Identities=11% Similarity=0.065 Sum_probs=143.3
Q ss_pred HHHHHHHhcch---hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHH-HHH-HHHhhccCCCchhHHHHHHHHHhcCCCch
Q 015513 95 VRKLVRDLDSG---HLRISTLKKMEALAMENERNRKSLEEAFVVRA-LVL-FIITSYKGNKTTGLEEALRILSLVWSPSN 169 (405)
Q Consensus 95 i~~lv~~l~~~---~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~-Lv~-lL~~~~~~~~~~~~e~A~~~L~~L~~~~~ 169 (405)
+..+++..++. ..+++++..+...+...+. ...+...+++-. ++. -++.. .+..++-.|+.+|.+-..
T Consensus 135 m~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~e---t~~avRLaaL~aL~dsl~--- 207 (858)
T COG5215 135 MEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNE---TTSAVRLAALKALMDSLM--- 207 (858)
T ss_pred HHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHH---
Confidence 33444444432 7788899999887753222 223333343322 221 22211 122346677777776221
Q ss_pred hhHHhhcccc-h-hHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhh-ccchhhhcccHHHHHHHHHHHhhcCChHHH
Q 015513 170 ENKALVDHHN-Q-DLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELA-SKGLLESTLNLDFFKEMVKLLKENISQQAT 246 (405)
Q Consensus 170 ~~~~~i~~~g-~-~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~-~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~ 246 (405)
..+..+...+ + -.+.......++ ++.+++..|..+|..+-.-. ..-..++ +.-....+.+.+++. +.++.
T Consensus 208 fv~~nf~~E~erNy~mqvvceatq~----~d~e~q~aafgCl~kim~LyY~fm~~ym--E~aL~alt~~~mks~-nd~va 280 (858)
T COG5215 208 FVQGNFCYEEERNYFMQVVCEATQG----NDEELQHAAFGCLNKIMMLYYKFMQSYM--ENALAALTGRFMKSQ-NDEVA 280 (858)
T ss_pred HHHHhhcchhhhchhheeeehhccC----CcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCc-chHHH
Confidence 1122222111 0 022222333343 88899999999988875432 2222232 323333445566666 66777
Q ss_pred HHHHHHHHHhccCC-c--------------hhH--HHHhhcchHHHHHHhhcC-C----CC-CcHHHHHHHHHHHhcCHh
Q 015513 247 KSGLHVLLQACPMG-G--------------NRV--KITEANAVFELIELELTK-P----EK-STTELIFNLLAQLCSCAD 303 (405)
Q Consensus 247 ~~a~~aL~~L~~~~-~--------------n~~--~~v~~g~v~~Lv~lL~~~-~----~~-~~~e~a~~~L~~L~~~~~ 303 (405)
-.|...-..+|..+ + |.. ...-+.++|.|++||... . |. ..-..|...|..-+...
T Consensus 281 ~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~- 359 (858)
T COG5215 281 IQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK- 359 (858)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh-
Confidence 66666543444311 0 111 111246899999999762 1 11 22333333333222110
Q ss_pred hHHHHHhcccchHHHHHH-HHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHH
Q 015513 304 GRLKFREHAGAIAMVTKR-LLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEIL 382 (405)
Q Consensus 304 ~~~~i~~~~g~i~~Lv~~-l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll 382 (405)
...+++ . |-.+|+- +...+-..+|.++.++..+-.. +++..+..++. .++|.+..++. +..--+|+.+++.+
T Consensus 360 -gd~i~~-p--Vl~FvEqni~~~~w~nreaavmAfGSvm~g-p~~~~lT~~V~-qalp~i~n~m~-D~~l~vk~ttAwc~ 432 (858)
T COG5215 360 -GDKIMR-P--VLGFVEQNIRSESWANREAAVMAFGSVMHG-PCEDCLTKIVP-QALPGIENEMS-DSCLWVKSTTAWCF 432 (858)
T ss_pred -hhHhHH-H--HHHHHHHhccCchhhhHHHHHHHhhhhhcC-ccHHHHHhhHH-hhhHHHHHhcc-cceeehhhHHHHHH
Confidence 111111 1 2222321 1122346688999999988765 33445555554 46788877776 66777899999989
Q ss_pred HHhhcccC--CCCCcc
Q 015513 383 RLHSNVWN--NSPCIQ 396 (405)
Q Consensus 383 ~~l~~~~~--~~~~~~ 396 (405)
..+..+.. -+||.-
T Consensus 433 g~iad~va~~i~p~~H 448 (858)
T COG5215 433 GAIADHVAMIISPCGH 448 (858)
T ss_pred HHHHHHHHHhcCcccc
Confidence 88888653 446643
No 248
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.36 E-value=0.97 Score=43.52 Aligned_cols=46 Identities=13% Similarity=0.223 Sum_probs=33.3
Q ss_pred CcccCcCCcccCCC---ccccCCCCcccHHHHHHHHhc---CCC---CCCCCCCC
Q 015513 8 QYFICPISLQIMKD---PVTAITGISYDRESIEKWLKT---AKD---TTCPVTKQ 53 (405)
Q Consensus 8 ~~~~Cpi~~~~m~d---Pv~~~~g~~~~r~~I~~~~~~---~~~---~~cP~~~~ 53 (405)
.-|-|-||.+-..- -+.+||+|.||+.|...++.. .|. -.||.++-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 34789999976544 446799999999999999763 222 34877544
No 249
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=85.31 E-value=0.33 Score=50.02 Aligned_cols=66 Identities=17% Similarity=0.350 Sum_probs=46.7
Q ss_pred CcccCcCCcccCCCccccCCCCcccHHHHHHHHhcC-CCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 015513 8 QYFICPISLQIMKDPVTAITGISYDRESIEKWLKTA-KDTTCPVTKQPLPRDSGLTSNHTLRRLIQAW 74 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~-~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~ 74 (405)
..+.||||.+...+|+.+.|-|.||+.|+-.-|... +...||+|+..... ..........+++++.
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK-~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK-RSLRESPRFSQLSKES 86 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh-hhccccchHHHHHHHh
Confidence 457899999999999999999999999988755432 25679999865543 2233333344555543
No 250
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=85.20 E-value=15 Score=37.24 Aligned_cols=153 Identities=12% Similarity=0.020 Sum_probs=99.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCC---CCcHHHHHHHHHHHhcCHhhHH
Q 015513 230 FKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPE---KSTTELIFNLLAQLCSCADGRL 306 (405)
Q Consensus 230 i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~---~~~~e~a~~~L~~L~~~~~~~~ 306 (405)
...+.+++.++ ++..+..|++-|..++....-...+++...+..|..++.++.. ..+....+.++..|-.++--..
T Consensus 85 a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 45677788888 7788888999999999988889999999999999999988722 1233344444444433322112
Q ss_pred HHHhcccchHHHHHHH--HccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHH
Q 015513 307 KFREHAGAIAMVTKRL--LRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRL 384 (405)
Q Consensus 307 ~i~~~~g~i~~Lv~~l--~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~ 384 (405)
..+. ..+|...+..+ .+....+-..|+..|-.+..++.. ..+.+.+.--+..|+..++. +..+.+-.|-+++..
T Consensus 164 ~~~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~--~~~~v~eev~i~~li~hlq~-~n~~i~~~aial~na 239 (713)
T KOG2999|consen 164 ESVS-NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDT--LRQLVAEEVPIETLIRHLQV-SNQRIQTCAIALLNA 239 (713)
T ss_pred eecc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChH--HHHHHHhcCcHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 2112 12333333322 112335567788888887766543 56677777789999999985 455556568787775
Q ss_pred hhc
Q 015513 385 HSN 387 (405)
Q Consensus 385 l~~ 387 (405)
+-.
T Consensus 240 l~~ 242 (713)
T KOG2999|consen 240 LFR 242 (713)
T ss_pred HHh
Confidence 544
No 251
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=85.18 E-value=4.8 Score=33.49 Aligned_cols=79 Identities=22% Similarity=0.254 Sum_probs=63.6
Q ss_pred chHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccCCCC
Q 015513 314 AIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWNNSP 393 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~ 393 (405)
++..|.+.|...++..+-.|+.+|-.+.++++. ....++.+.+.+..|..++.....+.+|+++..+++.-.....+.|
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~-~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGT-HFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKP 120 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCH-HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 566777777666778888899999998888775 4777788889999999999766788999999999998777665553
No 252
>PRK14707 hypothetical protein; Provisional
Probab=85.11 E-value=92 Score=37.18 Aligned_cols=268 Identities=12% Similarity=0.049 Sum_probs=136.1
Q ss_pred HHHHHHHhc---chhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhh
Q 015513 95 VRKLVRDLD---SGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNEN 171 (405)
Q Consensus 95 i~~lv~~l~---~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~ 171 (405)
+.-++..++ +......+...|..+....+..+..+ ..-+|..++.-++.-... ..++.|+..|...-.+++..
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~---~~c~~aa~~la~~l~~~~~l 240 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPDT---PDCGNAVSALAERLADESRL 240 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHHcCcHHH
Confidence 444555553 23556667777765555555555544 556666666666533222 23777777776644444444
Q ss_pred HHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHH-HHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHH
Q 015513 172 KALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVL-KMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGL 250 (405)
Q Consensus 172 ~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L-~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 250 (405)
+..+-.. .+...++-|++|. +.....+|+..| ..|+.+..-... + +.--+.-.+.-|+.-.+..+...|+
T Consensus 241 ~~~~~~q---~va~~lN~lsKwp---~~~~C~~a~~~lA~rl~~~~~l~~a-l--~~q~vanalNalSKwpd~~vc~~Aa 311 (2710)
T PRK14707 241 RNELKPQ---ELGNALNALSKWA---DTPVCAAAASALAERLVDDPGLRKA-L--DPINVTQALNALSKWADLPVCAEAA 311 (2710)
T ss_pred HHhCChH---HHHHHHHHHhcCC---CchHHHHHHHHHHHHHhhhHHHHHh-c--CHHHHHHHHhhhhcCCCchHHHHHH
Confidence 4444322 6777888888774 444444555444 456544333222 2 2222223333333322444444444
Q ss_pred HHH-HHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHH-HHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccC--
Q 015513 251 HVL-LQACPMGGNRVKITEANAVFELIELELTKPEKSTTEL-IFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVS-- 326 (405)
Q Consensus 251 ~aL-~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~-a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s-- 326 (405)
..| ..|....+-+ +-.+.-.+...++-|+.=++..+... |...-..|+..++-+..+ + ..|+...+..+-+..
T Consensus 312 ~~la~rl~~d~~l~-~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l-~-~q~~a~~lNalsKWp~~ 388 (2710)
T PRK14707 312 IALAERLADDPELC-KALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL-E-PQGVSSVLNALSKWPDT 388 (2710)
T ss_pred HHHHHHHhccHhhh-hccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc-c-hhHHHHHHhhhhcCCCc
Confidence 444 4555544433 33455555666666654334444444 444445576666666664 3 446777766554432
Q ss_pred hhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHH
Q 015513 327 PATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEIL 382 (405)
Q Consensus 327 ~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll 382 (405)
..+...+...-..|.. +.+.++.| +.-.|.-++.-|...+...+...|+..|
T Consensus 389 ~~c~~aa~~LA~~l~~---d~~l~~~~-~~Q~van~lnalsKWPd~~~C~~aa~~l 440 (2710)
T PRK14707 389 PVCAAAASALAEHVVD---DLELRKGL-DPQGVSNALNALAKWPDLPICGQAVSAL 440 (2710)
T ss_pred hHHHHHHHHHHHHhcc---Chhhhhhc-chhhHHHHHHHhhcCCcchhHHHHHHHH
Confidence 2333333333333442 22234444 3344566666666566555555555443
No 253
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=84.65 E-value=2.5 Score=41.81 Aligned_cols=104 Identities=9% Similarity=-0.025 Sum_probs=67.9
Q ss_pred CcHHhHHHHHHHHHHHHhhhccchhhh--cccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHH--hhcch
Q 015513 197 RHVAVKTSAMIVLKMVLELASKGLLES--TLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKIT--EANAV 272 (405)
Q Consensus 197 ~~~~~~~~A~~~L~~L~~~~~~~~~i~--~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v--~~g~v 272 (405)
.+..++.+|.+.|+++...-+....-. ....|.+..+..-.-.+...+++-+|.-++.||-+++.-+-+-. ..-++
T Consensus 496 d~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F 575 (728)
T KOG4535|consen 496 DKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAF 575 (728)
T ss_pred hhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHH
Confidence 456788999999999976543211111 01124444444332222367899999999999998765322211 23478
Q ss_pred HHHHHHhhcCCCCCcHHHHHHHHHHHhc
Q 015513 273 FELIELELTKPEKSTTELIFNLLAQLCS 300 (405)
Q Consensus 273 ~~Lv~lL~~~~~~~~~e~a~~~L~~L~~ 300 (405)
+.|..++.+..+=.++-.|+++|..-..
T Consensus 576 ~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 576 NALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 8899999886566788999999977643
No 254
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.18 E-value=50 Score=34.99 Aligned_cols=136 Identities=13% Similarity=0.005 Sum_probs=87.2
Q ss_pred HHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHH
Q 015513 172 KALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLH 251 (405)
Q Consensus 172 ~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~ 251 (405)
+...++.| +...|.++..- +..+.+..+..+|. +.-+ ..-. .....++++-+.+.....-...-.++.
T Consensus 497 ~~~~Ik~~--~~~aLlrl~~~----q~e~akl~~~~aL~--~~i~-f~~~---~~~~v~~~~~s~~~~d~~~~en~E~L~ 564 (748)
T KOG4151|consen 497 RAKKIKPG--GYEALLRLGQQ----QFEEAKLKWYHALA--GKID-FPGE---RSYEVVKPLDSALHNDEKGLENFEALE 564 (748)
T ss_pred cCcccccc--HHHHHHHHHHH----hchHHHHHHHHHHh--hhcC-CCCC---chhhhhhhhcchhhhhHHHHHHHHHHH
Confidence 45555566 88889888876 66677777777776 1111 0000 124567777777765422233446888
Q ss_pred HHHHhccCC-chhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhc-ccchHHHHH
Q 015513 252 VLLQACPMG-GNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREH-AGAIAMVTK 320 (405)
Q Consensus 252 aL~~L~~~~-~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~-~g~i~~Lv~ 320 (405)
++.||++.. ..|..+.+.-.++-+-+++.+. +...+..++..+.||.-++.-..+.+.+ ..+.+....
T Consensus 565 altnLas~s~s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~ 634 (748)
T KOG4151|consen 565 ALTNLASISESDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNL 634 (748)
T ss_pred HhhcccCcchhhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHH
Confidence 999999854 4677788877777655665553 6677888999999998888765555433 445555544
No 255
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=84.05 E-value=6.7 Score=32.59 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP 258 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~ 258 (405)
++..|.+-|.+ +++..+..|..+|..+..+.......-+.+.+++..|++++....++.+++.++..+.+-+.
T Consensus 42 a~ral~krl~~----~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLS----KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcC----CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 77788888887 89999999999999988764332222114779999999999876688999999999988765
No 256
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=83.77 E-value=24 Score=36.05 Aligned_cols=196 Identities=13% Similarity=0.093 Sum_probs=105.3
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHH-HHHHhhcCChHHHHHHHHHHHH-hcc-
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEM-VKLLKENISQQATKSGLHVLLQ-ACP- 258 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~L-v~lL~~~~~~~~~~~a~~aL~~-L~~- 258 (405)
.+..+++.... +.....+..+..++.+.+...+....+. ..+..+-.+ ..-++++.+..+|-+|+++|++ |-.
T Consensus 134 lm~~mv~nvg~---eqp~~~k~~sl~~~gy~ces~~Pe~li~-~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv 209 (858)
T COG5215 134 LMEEMVRNVGD---EQPVSGKCESLGICGYHCESEAPEDLIQ-MSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV 209 (858)
T ss_pred HHHHHHHhccc---cCchHhHHHHHHHHHHHhhccCHHHHHH-HhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Confidence 33344444443 3456678899999999987766544443 333333333 3355666678899999999988 322
Q ss_pred -----CCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHcc-ChhhhHH
Q 015513 259 -----MGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRV-SPATNDR 332 (405)
Q Consensus 259 -----~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~-s~~~~e~ 332 (405)
++++|..+.+ ...+.-+. ++.+++..|.+.|..+-...-...+..-+ .++..|...-+.. .+...-.
T Consensus 210 ~~nf~~E~erNy~mq-----vvceatq~-~d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~nd~va~q 282 (858)
T COG5215 210 QGNFCYEEERNYFMQ-----VVCEATQG-NDEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQNDEVAIQ 282 (858)
T ss_pred HHhhcchhhhchhhe-----eeehhccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcchHHHHH
Confidence 2223433332 12233333 47788888888888876543322223221 2444444333322 3344455
Q ss_pred HHHHHHHhcccCCCHHHHHHHH----------------hcChHHHHHHHHhccC----cH--HHHHHHHHHHHHhhcccC
Q 015513 333 AVHILSSISKFSATYEVVLEML----------------SVGAVSKLCMVTQADC----EK--YLKDRAKEILRLHSNVWN 390 (405)
Q Consensus 333 a~~~L~~L~~~~~~~~~~~~~~----------------~~G~v~~Ll~ll~~~~----~~--~~k~~A~~ll~~l~~~~~ 390 (405)
++..-..+|...-+ .--+.. -+.++|.|+.||...+ .+ ..-..|...|+++..+-+
T Consensus 283 avEfWsticeEeid--~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g 360 (858)
T COG5215 283 AVEFWSTICEEEID--GEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG 360 (858)
T ss_pred HHHHHHHHHHHHhh--hHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh
Confidence 55543356643211 111111 1237899999997622 11 234566677887776533
No 257
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=83.22 E-value=7.3 Score=33.27 Aligned_cols=114 Identities=14% Similarity=0.154 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhh--cchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhh
Q 015513 227 LDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEA--NAVFELIELELTKPEKSTTELIFNLLAQLCSCADG 304 (405)
Q Consensus 227 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~--g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~ 304 (405)
...+..+..+|+++ ++..+-.++..+..++...+ ...+.+. --+..|+.+|....+..+++.++.+|..|.....+
T Consensus 24 ~~l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 24 HKLVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35677788889887 78889889888888887532 3444443 36777888888754567888999999888754333
Q ss_pred HHHHHhc--ccchHHHHHHHHccCh--hhhHHHHHHHHHhcc
Q 015513 305 RLKFREH--AGAIAMVTKRLLRVSP--ATNDRAVHILSSISK 342 (405)
Q Consensus 305 ~~~i~~~--~g~i~~Lv~~l~~~s~--~~~e~a~~~L~~L~~ 342 (405)
...+..+ ...++.++..++.... ...+.+..+|..+-.
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLP 143 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3222211 1245555555544333 445555555555443
No 258
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.20 E-value=8.7 Score=31.46 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=62.9
Q ss_pred chHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhc--cCcHHHHHHHHHHHHHhhcccCC
Q 015513 314 AIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQA--DCEKYLKDRAKEILRLHSNVWNN 391 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~--~~~~~~k~~A~~ll~~l~~~~~~ 391 (405)
++..|-+.|...++..+-.|+.+|-.+.++++.. ...++.....+..|+.++.. ...+.+|+++..+++.......+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~-f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKP-FHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH-HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4566667666667788888999999999887753 66666666777778888865 35789999999999988888776
Q ss_pred C-CCcc
Q 015513 392 S-PCIQ 396 (405)
Q Consensus 392 ~-~~~~ 396 (405)
+ |..+
T Consensus 117 ~~~~~~ 122 (133)
T cd03561 117 HSEDLP 122 (133)
T ss_pred CCccch
Confidence 6 4443
No 259
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=82.90 E-value=6.6 Score=32.75 Aligned_cols=79 Identities=18% Similarity=0.299 Sum_probs=63.2
Q ss_pred chHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccCCCC
Q 015513 314 AIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWNNSP 393 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~ 393 (405)
++..|.+.|....+..+-.|+.+|-.+.++++. ....++.....+..|..++.......+|++...+++.......+.|
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~-~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~ 116 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGK-RFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDP 116 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH-HHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 566777777666678888899999999998885 4777888888999999999755678999999999987776655444
No 260
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=82.54 E-value=48 Score=31.90 Aligned_cols=184 Identities=14% Similarity=0.088 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHHHhhHHhHH-----HHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccch
Q 015513 106 HLRISTLKKMEALAMENERNRK-----SLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQ 180 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~-----~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~ 180 (405)
+.+........++.+.....+. .+.. --|-++..|-..+...+ .--.+-..|.....++. ..+.+....
T Consensus 91 EsrKdv~~if~~llr~~~~~~~~p~v~yl~~--~~peil~~L~~gy~~~d--ial~~g~mlRec~k~e~-l~~~iL~~~- 164 (335)
T PF08569_consen 91 ESRKDVAQIFSNLLRRQIGSRSPPTVDYLER--HRPEILDILLRGYENPD--IALNCGDMLRECIKHES-LAKIILYSE- 164 (335)
T ss_dssp HHHHHHHHHHHHHHT--BTTB--HHHHHHHT----THHHHHHHHGGGSTT--THHHHHHHHHHHTTSHH-HHHHHHTSG-
T ss_pred cccccHHHHHHHHHhhccCCCCCchHHHHHh--CCHHHHHHHHHHhcCcc--ccchHHHHHHHHHhhHH-HHHHHhCcH-
Confidence 5566666666666655433332 2222 11333444444444432 24556678888887764 344555554
Q ss_pred hHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccch-hhh-cccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 015513 181 DLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGL-LES-TLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP 258 (405)
Q Consensus 181 ~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~-~i~-~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~ 258 (405)
.+-.+...... .+-++...|..++..|-....... ... ..-..++...-.||.++ +--.++.+++.|..|-.
T Consensus 165 -~f~~ff~~~~~----~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslkLL~elll 238 (335)
T PF08569_consen 165 -CFWKFFKYVQL----PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLKLLGELLL 238 (335)
T ss_dssp -GGGGHHHHTTS----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhcC----CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHHHHHHHHH
Confidence 67778888887 899999999999999765432111 111 01235677788888887 88999999999999999
Q ss_pred CCchhHHHHh----hcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCH
Q 015513 259 MGGNRVKITE----ANAVFELIELELTKPEKSTTELIFNLLAQLCSCA 302 (405)
Q Consensus 259 ~~~n~~~~v~----~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~ 302 (405)
+..|-..|.. ..-+..+..+|++. ++.++-+|..+.-.-...+
T Consensus 239 dr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 239 DRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp SGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-S
T ss_pred chhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCC
Confidence 9988776654 45677777888875 7788999998887665544
No 261
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=82.36 E-value=0.6 Score=44.46 Aligned_cols=45 Identities=9% Similarity=0.203 Sum_probs=37.2
Q ss_pred cccCcCCcccCCC----ccccCCCCcccHHHHHHHHhcCCCCCCCCCCC
Q 015513 9 YFICPISLQIMKD----PVTAITGISYDRESIEKWLKTAKDTTCPVTKQ 53 (405)
Q Consensus 9 ~~~Cpi~~~~m~d----Pv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~ 53 (405)
++.|-.|++.+-- ---+||.|.|--.|+++++.+++..+||.|++
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4789999987632 23579999999999999998877889999983
No 262
>PRK14707 hypothetical protein; Provisional
Probab=82.34 E-value=1.2e+02 Score=36.35 Aligned_cols=221 Identities=11% Similarity=-0.019 Sum_probs=110.0
Q ss_pred CCchHHHHHHHHHhc---chhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcC
Q 015513 89 ALNKDQVRKLVRDLD---SGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVW 165 (405)
Q Consensus 89 ~~~~~~i~~lv~~l~---~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~ 165 (405)
.++..++...+..++ +......|...|..-..++.+-++.+---| |.-++.-|+.- .+ ...+..++..|..-.
T Consensus 369 ~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~-van~lnalsKW-Pd--~~~C~~aa~~lA~~l 444 (2710)
T PRK14707 369 DLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQG-VSNALNALAKW-PD--LPICGQAVSALAGRL 444 (2710)
T ss_pred ccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhh-HHHHHHHhhcC-Cc--chhHHHHHHHHHHHH
Confidence 345566777777764 346777888888766667777777664444 44444555322 22 234677776666544
Q ss_pred CCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHH
Q 015513 166 SPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQA 245 (405)
Q Consensus 166 ~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~ 245 (405)
.++.+.++.+.-. .|...+..|++|. .++...+.|-.+...|+.+.+-+..+- -.++...|=.|=+-+.....
T Consensus 445 a~d~~l~~~~~p~---~va~~LnalSKWP--d~p~c~~aa~~La~~l~~~~~l~~a~~--~q~~~~~L~aLSK~Pd~~~c 517 (2710)
T PRK14707 445 AHDTELCKALDPI---NVTQALDALSKWP--DTPICGQTASALAARLAHERRLRKALK--PQEVVIALHSLSKWPDTPIC 517 (2710)
T ss_pred hccHHHHhhcChH---HHHHHHHHhhcCC--CChhHHHHHHHHHHHhcccHHHHhhcC--HHHHHHHHHHhhcCCCcHHH
Confidence 4555666655543 3556667777775 444444555455556665544333221 23333333333333323333
Q ss_pred HHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHH
Q 015513 246 TKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRL 322 (405)
Q Consensus 246 ~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l 322 (405)
.+++.+.-..+.....-...|-.. -+..+++-|...++....+.++..|..+.........-+. .-.|..++..+
T Consensus 518 ~~A~~~lA~rl~~~~~l~~~~~~~-~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~-aq~Vs~llNaL 592 (2710)
T PRK14707 518 AEAASALAERVVDELQLRKAFDAH-QVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLH-RQGVVIVLNAL 592 (2710)
T ss_pred HHHHHHHHHHhccchhhhhhhhhH-HHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhh-hhHHHHHHHhh
Confidence 344444434444322222222222 2233344444333455666666666665433222222222 34566666644
No 263
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=81.98 E-value=38 Score=37.21 Aligned_cols=153 Identities=14% Similarity=0.051 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHH
Q 015513 227 LDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRL 306 (405)
Q Consensus 227 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~ 306 (405)
.++++.|...|++. +..++-.|++-+..+....+ ..+++. +|...++++....+...=.-++-+|+.|+.-+=-.-
T Consensus 340 E~vie~Lls~l~d~-dt~VrWSaAKg~grvt~rlp--~~Lad~-vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDT-DTVVRWSAAKGLGRVTSRLP--PELADQ-VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCC-cchhhHHHHHHHHHHHccCc--HHHHHH-HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 36777888888887 88999999999999988655 344443 677777876654334555567788888875322111
Q ss_pred HHHhcccchHHHHHHHHcc--------ChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHH
Q 015513 307 KFREHAGAIAMVTKRLLRV--------SPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRA 378 (405)
Q Consensus 307 ~i~~~~g~i~~Lv~~l~~~--------s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A 378 (405)
..++ ..+|.+++.+... +...++.|.-++|++++..+.. ...-.++ .....|+-..--|..-..|+.|
T Consensus 416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~-~l~p~l~-~L~s~LL~~AlFDrevncRRAA 491 (1133)
T KOG1943|consen 416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS-DLKPVLQ-SLASALLIVALFDREVNCRRAA 491 (1133)
T ss_pred HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh-hhhHHHH-HHHHHHHHHHhcCchhhHhHHH
Confidence 1112 2556666544221 2356889999999999865432 1222222 1222222222225555667777
Q ss_pred HHHHHHhhc
Q 015513 379 KEILRLHSN 387 (405)
Q Consensus 379 ~~ll~~l~~ 387 (405)
.+.++-...
T Consensus 492 sAAlqE~VG 500 (1133)
T KOG1943|consen 492 SAALQENVG 500 (1133)
T ss_pred HHHHHHHhc
Confidence 776664444
No 264
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=81.06 E-value=10 Score=31.63 Aligned_cols=74 Identities=20% Similarity=0.237 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccC
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPM 259 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~ 259 (405)
++..|.+-|.+ +++.++..|..+|..+..+.......-+.+.+++..|++++....++.++...+..|...+..
T Consensus 38 a~ral~KRl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLNH----KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 77777788887 889999999999999987665433222146799999999998855889999999999887653
No 265
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=80.76 E-value=2.5 Score=35.38 Aligned_cols=48 Identities=23% Similarity=0.435 Sum_probs=35.1
Q ss_pred CcccCcCCcccCCCccccCCCCc-----ccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKDPVTAITGIS-----YDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~~~g~~-----~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
.+-.|=||.+--. +...||..+ -=++|+++|....+...||.|+.++.
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3457999988753 444566532 25899999998766778999998874
No 266
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=80.63 E-value=47 Score=30.60 Aligned_cols=202 Identities=17% Similarity=0.105 Sum_probs=109.5
Q ss_pred hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHH
Q 015513 132 AFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKM 211 (405)
Q Consensus 132 ~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~ 211 (405)
..+|++|+..|...+.. +-++.+|..+|..+- . ++ .++.+-+..+. ...++++-+..++..
T Consensus 66 ~~Av~~l~~vl~desq~--pmvRhEAaealga~~-~-~~-----------~~~~l~k~~~d----p~~~v~ETc~lAi~r 126 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQE--PMVRHEAAEALGAIG-D-PE-----------SLEILTKYIKD----PCKEVRETCELAIKR 126 (289)
T ss_pred chhhHHHHHHhcccccc--hHHHHHHHHHHHhhc-c-hh-----------hHHHHHHHhcC----CccccchHHHHHHHH
Confidence 45788888888654322 234667777777664 1 12 22233333322 444555555555555
Q ss_pred HHhhhccc------hhhh-----cccHHHHHHHHHHHhhcCChH-HHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHh
Q 015513 212 VLELASKG------LLES-----TLNLDFFKEMVKLLKENISQQ-ATKSGLHVLLQACPMGGNRVKITEANAVFELIELE 279 (405)
Q Consensus 212 L~~~~~~~------~~i~-----~~~~g~i~~Lv~lL~~~~~~~-~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL 279 (405)
+--.+... ..+. -...+-+..|-..|.+...+. -+..|.-.|+|+-. ..+|-.|++-+
T Consensus 127 le~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l 196 (289)
T KOG0567|consen 127 LEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGL 196 (289)
T ss_pred HHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhc
Confidence 52211100 0000 001122444444444431111 23334444443321 22455566666
Q ss_pred hcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccC--hhhhHHHHHHHHHhcccCCCHHHHHHHHhcC
Q 015513 280 LTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVS--PATNDRAVHILSSISKFSATYEVVLEMLSVG 357 (405)
Q Consensus 280 ~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s--~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G 357 (405)
..+ +.-.+..++.+|++|- +.-+||.|.+.|.... +-.+-.|+.+|.+++.. -
T Consensus 197 ~~~-SalfrhEvAfVfGQl~-----------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-------------~ 251 (289)
T KOG0567|consen 197 ADD-SALFRHEVAFVFGQLQ-----------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-------------D 251 (289)
T ss_pred ccc-hHHHHHHHHHHHhhcc-----------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-------------H
Confidence 654 5667888889998872 3447888888666543 35567788888888742 2
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 358 AVSKLCMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 358 ~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
.++.|...+. +..+.+++.+...|.++...
T Consensus 252 ~~~vL~e~~~-D~~~vv~esc~valdm~eye 281 (289)
T KOG0567|consen 252 CVEVLKEYLG-DEERVVRESCEVALDMLEYE 281 (289)
T ss_pred HHHHHHHHcC-CcHHHHHHHHHHHHHHHHHh
Confidence 3455556665 56788888888888876554
No 267
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.18 E-value=1.4 Score=43.11 Aligned_cols=48 Identities=13% Similarity=0.240 Sum_probs=31.8
Q ss_pred cccCcCCc-ccCCCcc---ccCCCCcccHHHHHHHHhcC----CCCCCCC--CCCCCC
Q 015513 9 YFICPISL-QIMKDPV---TAITGISYDRESIEKWLKTA----KDTTCPV--TKQPLP 56 (405)
Q Consensus 9 ~~~Cpi~~-~~m~dPv---~~~~g~~~~r~~I~~~~~~~----~~~~cP~--~~~~~~ 56 (405)
...|+||. +.+...- +..|||.||..|..++++.. ....||. |...++
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~ 203 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT 203 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence 36899999 3332212 45699999999999998731 1345776 555554
No 268
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=80.10 E-value=9.1 Score=31.38 Aligned_cols=80 Identities=21% Similarity=0.313 Sum_probs=62.0
Q ss_pred chHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCc-HHHHHHHHHHHHHhhcccCCC
Q 015513 314 AIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCE-KYLKDRAKEILRLHSNVWNNS 392 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~-~~~k~~A~~ll~~l~~~~~~~ 392 (405)
++..|-+.|...++..+-.|+.+|-.+.++++. ....++.+...+..|..++....+ +.+|+++..++..-.....+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~-~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~ 116 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGS-KFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKND 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH-HHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 556677777766778888999999999988775 477788888899999999876544 348999999988877776655
Q ss_pred CC
Q 015513 393 PC 394 (405)
Q Consensus 393 ~~ 394 (405)
|-
T Consensus 117 ~~ 118 (133)
T smart00288 117 PD 118 (133)
T ss_pred CC
Confidence 43
No 269
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=79.84 E-value=0.66 Score=36.34 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=26.3
Q ss_pred CCCCcccCcCCcccCCCcc--ccCCCCcccHHHHH
Q 015513 5 EVPQYFICPISLQIMKDPV--TAITGISYDRESIE 37 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv--~~~~g~~~~r~~I~ 37 (405)
.+.++-.|++|++.+.+++ +.||||.|-..|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3566778999999998766 44999999888864
No 270
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=79.82 E-value=11 Score=30.79 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChH-HHHHHHHHHHHhcc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQ-ATKSGLHVLLQACP 258 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~-~~~~a~~aL~~L~~ 258 (405)
++..|-+-|.+ +++..+..|..+|..+..+.......-+.+.+++..|++++...++.. +++.++..+..-+.
T Consensus 38 a~r~l~krl~~----~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNN----KNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 67777777887 899999999999999987743322221147789999999998864444 88888888877665
No 271
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.68 E-value=11 Score=41.34 Aligned_cols=137 Identities=12% Similarity=0.021 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHH
Q 015513 134 VVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVL 213 (405)
Q Consensus 134 ~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~ 213 (405)
..|.++...+.+....+++.+..|.-+|..+.--+.+ +.+. .+|.|+.++..+ .++-+|.|++..+..|+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fces---~l~llftimeks---p~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCES---HLPLLFTIMEKS---PSPRIRSNLVVALGDLA 989 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHHH---HHHHHHHHHhcC---CCceeeecchheccchh
Confidence 3455555555443334455677777777776432212 2222 689999999852 78899999999999987
Q ss_pred hhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHH
Q 015513 214 ELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIF 292 (405)
Q Consensus 214 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~ 292 (405)
-.-.+-. + -.-+.|-+.|++. ++.+++.|+.+|.+|-.++--+. -|.++-+..+|.++ +..++..|=
T Consensus 990 v~fpnli-----e-~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndmiKV----KGql~eMA~cl~D~-~~~IsdlAk 1056 (1251)
T KOG0414|consen 990 VRFPNLI-----E-PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDMIKV----KGQLSEMALCLEDP-NAEISDLAK 1056 (1251)
T ss_pred hhccccc-----c-hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhhhHh----cccHHHHHHHhcCC-cHHHHHHHH
Confidence 6543322 1 3346678888887 89999999999999987653222 47788888888775 666666665
No 272
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.62 E-value=0.98 Score=47.41 Aligned_cols=42 Identities=24% Similarity=0.450 Sum_probs=34.8
Q ss_pred cccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCC
Q 015513 9 YFICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPL 55 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~ 55 (405)
.-.|..|.-.+.=|++- .|||.|-++|.+ + +...||.|.-.+
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~-~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----D-KEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc----c-CcccCCccchhh
Confidence 35899999999999877 799999999987 3 257899996543
No 273
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=79.47 E-value=69 Score=31.77 Aligned_cols=110 Identities=13% Similarity=0.043 Sum_probs=75.7
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhh-hcc-------------chhhhcccHHHHHHHHHHHhhcCChHHHH
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLEL-ASK-------------GLLESTLNLDFFKEMVKLLKENISQQATK 247 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~-~~~-------------~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~ 247 (405)
.+..|+.+|.+ .+....|+..+.-|..+ ++. ++.+ ..-.+|.|++-.++. +.+.+.
T Consensus 272 ~~~~L~~lL~~------~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~---F~~~~p~L~~~~~~~-~~~~k~ 341 (415)
T PF12460_consen 272 LLDKLLELLSS------PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRF---FTQVLPKLLEGFKEA-DDEIKS 341 (415)
T ss_pred HHHHHHHHhCC------hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHH---HHHHHHHHHHHHhhc-ChhhHH
Confidence 45556666554 56677888888888766 221 1111 134567777777765 556888
Q ss_pred HHHHHHHHhccCCchhHHHHh-hcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCH
Q 015513 248 SGLHVLLQACPMGGNRVKITE-ANAVFELIELELTKPEKSTTELIFNLLAQLCSCA 302 (405)
Q Consensus 248 ~a~~aL~~L~~~~~n~~~~v~-~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~ 302 (405)
+-+.||.++..+-+....+-+ ...+|.|++-|... +..++..++.+|..+....
T Consensus 342 ~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 342 NYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcC
Confidence 899999999887664444444 46888899999764 7778999999998887543
No 274
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=79.12 E-value=18 Score=38.53 Aligned_cols=157 Identities=13% Similarity=0.050 Sum_probs=101.3
Q ss_pred HHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHH--HHHHHHh
Q 015513 114 KMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIG--ALMWVLQ 191 (405)
Q Consensus 114 ~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~--~Lv~lL~ 191 (405)
.|-+...+++.+-+.+.+.|++..+...+...+.+ +.+..+++.|.+++...+ .+.....-. .+. .+-.++.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~---~~~~~il~~l~n~~~~~~-~~~~~~~~~--~~~~~~f~~~~~ 567 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNE---ELHRKILGLLGNLAEVLE-LRELLMIFE--FIDFSVFKVLLN 567 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccch---hHHHHHHHHHHHHHHHhh-hhhhhhHHH--HHHHHHHHHHHh
Confidence 45567778899999999999999999999866322 447889999999986542 222221111 222 2223444
Q ss_pred hhcCCCcHHhHHHHHHHHHHHHhhhccchhhh----------------------cccHHHHHH-HHHHHhhcCChHHHHH
Q 015513 192 WENNDRHVAVKTSAMIVLKMVLELASKGLLES----------------------TLNLDFFKE-MVKLLKENISQQATKS 248 (405)
Q Consensus 192 ~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~----------------------~~~~g~i~~-Lv~lL~~~~~~~~~~~ 248 (405)
.| ...+.-.+|+.+|..+....+...... .....-+.+ +-+++.....+.....
T Consensus 568 ~w---~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lW 644 (699)
T KOG3665|consen 568 KW---DSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLW 644 (699)
T ss_pred hc---chhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHH
Confidence 42 344677888888888766533211000 011122334 5556666556788899
Q ss_pred HHHHHHHhcc-CCchhHHHHhhcchHHHHHHh
Q 015513 249 GLHVLLQACP-MGGNRVKITEANAVFELIELE 279 (405)
Q Consensus 249 a~~aL~~L~~-~~~n~~~~v~~g~v~~Lv~lL 279 (405)
|++++.++.. ++++.+.+.+.|.++.+.+.-
T Consensus 645 al~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 645 ALWTIKNVLEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred HHHHHHHHHHcChhhhhhhHhccchhhhhhcc
Confidence 9999999987 556887788888888777654
No 275
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.10 E-value=84 Score=34.99 Aligned_cols=179 Identities=12% Similarity=0.103 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHHHhhH-HhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCC----chhhHHhhcccch
Q 015513 106 HLRISTLKKMEALAMENE-RNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSP----SNENKALVDHHNQ 180 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~-~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~----~~~~~~~i~~~g~ 180 (405)
..+..++.+|..+.+..+ ++. .++.. .|+-++=+++. .+...+..|..+|.++... ++.+-. .+
T Consensus 712 ~~~~~rl~~L~~L~~~~~~e~~-~~i~k-~I~EvIL~~Ke----~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~--- 780 (1176)
T KOG1248|consen 712 PAQASRLKCLKRLLKLLSAEHC-DLIPK-LIPEVILSLKE----VNVKARRNAFALLVFIGAIQSSLDDGNEP--AS--- 780 (1176)
T ss_pred HHHHHHHHHHHHHHHhccHHHH-HHHHH-HHHHHHHhccc----ccHHHHhhHHHHHHHHHHHHhhhcccccc--hH---
Confidence 566677777777776554 211 11111 22222222232 2234488898888888621 001000 11
Q ss_pred hHHHHHHHHHhhhcCCCcHHhHHHHH--HHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 015513 181 DLIGALMWVLQWENNDRHVAVKTSAM--IVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP 258 (405)
Q Consensus 181 ~~i~~Lv~lL~~~~~~~~~~~~~~A~--~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~ 258 (405)
..|..++..+.-.. -..+.+..|. -++..+..+..+-.-.. .-.+.|..+...|.+. +++.++.|...+.-++.
T Consensus 781 ~~lnefl~~Isagl--~gd~~~~~as~Ivai~~il~e~~~~ld~~-~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~ 856 (1176)
T KOG1248|consen 781 AILNEFLSIISAGL--VGDSTRVVASDIVAITHILQEFKNILDDE-TLEKLISMVCLYLASN-SREIAKAAIGFIKVLVY 856 (1176)
T ss_pred HHHHHHHHHHHhhh--cccHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 26777777776511 0233333333 33333333222111000 0123444455555566 89999999999999887
Q ss_pred C-CchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc
Q 015513 259 M-GGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS 300 (405)
Q Consensus 259 ~-~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~ 300 (405)
. ++....--..-.+|.++.++.+. ...++...-..|..|+.
T Consensus 857 ~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 857 KFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred cCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHH
Confidence 4 34433333344788888877764 44556666666666654
No 276
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=79.07 E-value=14 Score=36.87 Aligned_cols=153 Identities=10% Similarity=0.061 Sum_probs=85.2
Q ss_pred HHHHhcc--hhHHHHHHHHHHHHHHh---h-HHhHHHHHHhchHHHHHHHHHhh---ccCCCchhHHHHHHHHHhcCCCc
Q 015513 98 LVRDLDS--GHLRISTLKKMEALAME---N-ERNRKSLEEAFVVRALVLFIITS---YKGNKTTGLEEALRILSLVWSPS 168 (405)
Q Consensus 98 lv~~l~~--~~~~~~Al~~L~~l~~~---~-~~~r~~i~~~g~v~~Lv~lL~~~---~~~~~~~~~e~A~~~L~~L~~~~ 168 (405)
++..+.+ -..|.++.+.+.++... + +..+..-...-++ .|.+++... +.+. .++..+|+.+|.|+..--
T Consensus 438 il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~~~~A~~~~Ad~-dkV~~navraLgnllQvl 515 (728)
T KOG4535|consen 438 ILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKMLRSAIEASADK-DKVKSNAVRALGNLLQFL 515 (728)
T ss_pred HHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHHHHHHHHhhhhh-hhhhhHHHHHHhhHHHHH
Confidence 3344444 27788888888877642 1 1111111111111 122222221 1111 245778888888875321
Q ss_pred -----hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCCh
Q 015513 169 -----NENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQ 243 (405)
Q Consensus 169 -----~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~ 243 (405)
..+++++. + +.+..+...+.. +...++=||+-++.||-+++.-+.+-.-...-+++.|..|+.+..+-
T Consensus 516 q~i~~~~~~e~~~--~-~~~~l~~~v~~~----~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NF 588 (728)
T KOG4535|consen 516 QPIEKPTFAEIIE--E-SIQALISTVLTE----AAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNF 588 (728)
T ss_pred HHhhhccHHHHHH--H-HHHhcccceecc----cccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccc
Confidence 11222221 2 022222233344 67889999999999998876543333212345788999999887688
Q ss_pred HHHHHHHHHHHHhccC
Q 015513 244 QATKSGLHVLLQACPM 259 (405)
Q Consensus 244 ~~~~~a~~aL~~L~~~ 259 (405)
+++..|+.+|.--..-
T Consensus 589 KVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 589 KVRIRAAAALSVPGKR 604 (728)
T ss_pred eEeehhhhhhcCCCCc
Confidence 9999999998766553
No 277
>PF14353 CpXC: CpXC protein
Probab=78.60 E-value=1.3 Score=36.11 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=31.9
Q ss_pred cccCcCCcccCCCccccCCCCcccHHHHHHHHhcC-CCCCCCCCCCCCC
Q 015513 9 YFICPISLQIMKDPVTAITGISYDRESIEKWLKTA-KDTTCPVTKQPLP 56 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~-~~~~cP~~~~~~~ 56 (405)
+++||-|+..|.-.+-..-.-..+....++-+... -..+||.|+..+.
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 46899999999887744333345566666666321 1357999998764
No 278
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=78.50 E-value=1.7 Score=33.94 Aligned_cols=49 Identities=22% Similarity=0.548 Sum_probs=28.6
Q ss_pred CCcccCcCCcccCCCccccC-CC-----CcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDPVTAI-TG-----ISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~-~g-----~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
++.+.||||+++-..=|-+. .+ .-|++.++.+...++ . .=|.+|++++.
T Consensus 38 ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~-~-~HPLSREpit~ 92 (113)
T PF06416_consen 38 EEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREG-A-PHPLSREPITP 92 (113)
T ss_dssp CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT-----TTT-----T
T ss_pred HHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcC-C-CCCCccCCCCh
Confidence 34479999999988877553 22 349999999998774 3 34899988864
No 279
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=78.49 E-value=12 Score=30.98 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=60.6
Q ss_pred chHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhc-----cCcHHHHHHHHHHHHHhhcc
Q 015513 314 AIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQA-----DCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~-----~~~~~~k~~A~~ll~~l~~~ 388 (405)
++..+.+.|...++..+-.|+.+|-.+.++++. ....++.+...+..|+.++.. .....+|++...+++.-...
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~-~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGE-RFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH-HHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 566677766666677788899999999988875 477888888899999999952 24678999999988877766
Q ss_pred cCCCC
Q 015513 389 WNNSP 393 (405)
Q Consensus 389 ~~~~~ 393 (405)
..+.|
T Consensus 118 f~~~p 122 (139)
T cd03567 118 LPHEP 122 (139)
T ss_pred hcccc
Confidence 55443
No 280
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=78.26 E-value=19 Score=30.60 Aligned_cols=112 Identities=15% Similarity=0.191 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhh-------------------------c-------ccHHH
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLES-------------------------T-------LNLDF 229 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~-------------------------~-------~~~g~ 229 (405)
.++.|.++|+. +.+.+.|..++++|+.|..-+..+.... . --..+
T Consensus 11 LL~~L~~iLk~---e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vv 87 (160)
T PF11865_consen 11 LLDILLNILKT---EQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVV 87 (160)
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHH
Confidence 45556666665 3456677777777777654443322210 0 01135
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhccCCc-hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHH
Q 015513 230 FKEMVKLLKENISQQATKSGLHVLLQACPMGG-NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQL 298 (405)
Q Consensus 230 i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~-n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L 298 (405)
+..|+++|+++.-..-...+..|+.++..... .+.... .-++|.++..+++. +...+|.-+.-|..|
T Consensus 88 i~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~-~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 88 INALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTC-PDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 66788888776323334456666666553222 222222 24888888888865 446666665555554
No 281
>PHA02862 5L protein; Provisional
Probab=78.23 E-value=2 Score=35.18 Aligned_cols=45 Identities=18% Similarity=0.436 Sum_probs=32.5
Q ss_pred cCcCCcccCCCccccCCCCc-----ccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 11 ICPISLQIMKDPVTAITGIS-----YDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 11 ~Cpi~~~~m~dPv~~~~g~~-----~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
.|=||++-=.+. .-||+.+ -=++|+++|+...+...||.|+.++.
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 478888765444 4566532 34789999997655678999998874
No 282
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=77.60 E-value=64 Score=30.35 Aligned_cols=169 Identities=12% Similarity=0.082 Sum_probs=98.3
Q ss_pred HHHHHH-HHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCC
Q 015513 182 LIGALM-WVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMG 260 (405)
Q Consensus 182 ~i~~Lv-~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~ 260 (405)
.+..|+ .-+++ .+..+|+.|..+|+-.+--+.. . ....++.+...++.+ +..++..|+++|..+....
T Consensus 27 ll~~lI~P~v~~----~~~~vR~~al~cLGl~~Lld~~---~---a~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~ 95 (298)
T PF12719_consen 27 LLDSLILPAVQS----SDPAVRELALKCLGLCCLLDKE---L---AKEHLPLFLQALQKD-DEEVKITALKALFDLLLTH 95 (298)
T ss_pred HHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhChH---H---HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHc
Confidence 455555 45566 7889999999999998876541 1 235577788888766 8899999999999987632
Q ss_pred c--hhHH-------HHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhh--
Q 015513 261 G--NRVK-------ITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPAT-- 329 (405)
Q Consensus 261 ~--n~~~-------~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~-- 329 (405)
+ .-.. .-....+..+.+.+.+. +.+++..|+..++.|--.+.-.. ....+..|+-.-+......
T Consensus 96 g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~ 170 (298)
T PF12719_consen 96 GIDIFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQ 170 (298)
T ss_pred CchhccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcH
Confidence 2 1111 12245677777888775 66777777777777654322111 0122333433222222111
Q ss_pred --hHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhcc
Q 015513 330 --NDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQAD 369 (405)
Q Consensus 330 --~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~ 369 (405)
++.-...+-..|..+. ..++.+..+.++.+..++...
T Consensus 171 ~LrQ~L~~Ffp~y~~s~~---~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 171 RLRQCLSVFFPVYASSSP---ENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHHhCc
Confidence 1222222223343222 345666667777777777653
No 283
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=77.59 E-value=0.82 Score=40.96 Aligned_cols=51 Identities=14% Similarity=0.316 Sum_probs=32.4
Q ss_pred cccCcCCcccC-CCcc-ccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccc
Q 015513 9 YFICPISLQIM-KDPV-TAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSN 64 (405)
Q Consensus 9 ~~~Cpi~~~~m-~dPv-~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n 64 (405)
+..|--|+.-= .||. ++.|+|.||-.|...-. ...||.|++++.. ..+.+|
T Consensus 3 ~VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~----~~~C~lCkk~ir~-i~l~~s 55 (233)
T KOG4739|consen 3 FVHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS----PDVCPLCKKSIRI-IQLNRS 55 (233)
T ss_pred eEEeccccccCCCCceeeeechhhhhhhhcccCC----ccccccccceeee-eecccc
Confidence 45566555211 5555 55899999999954321 2489999998754 444444
No 284
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.18 E-value=2.7 Score=29.95 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=25.9
Q ss_pred CCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHH
Q 015513 28 GISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTL 67 (405)
Q Consensus 28 g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l 67 (405)
-||||..|-+..+ +..||.|+-.+.. ...+|...|
T Consensus 28 EcTFCadCae~~l----~g~CPnCGGelv~-RP~RPaa~L 62 (84)
T COG3813 28 ECTFCADCAENRL----HGLCPNCGGELVA-RPIRPAAKL 62 (84)
T ss_pred eeehhHhHHHHhh----cCcCCCCCchhhc-CcCChHHHH
Confidence 4799999988776 3589999988864 556664433
No 285
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=77.17 E-value=74 Score=30.92 Aligned_cols=93 Identities=20% Similarity=0.231 Sum_probs=60.8
Q ss_pred hHHHHHHHHHhcc---hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHH-HHHHHhcCCC
Q 015513 92 KDQVRKLVRDLDS---GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEA-LRILSLVWSP 167 (405)
Q Consensus 92 ~~~i~~lv~~l~~---~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A-~~~L~~L~~~ 167 (405)
.+++..++..+.+ ...|+.++-.|..-+. ++..|..+...|.+..+++.+.....+. ....+ +.++.-++.+
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~---~~~l~~a~i~~~l~~d 95 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDD---ILALATAAILYVLSRD 95 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchH---HHHHHHHHHHHHHccC
Confidence 5677788888752 3778888888877765 7888999999999999999995432221 13333 3445545544
Q ss_pred chhhHHhhcccchhHHHHHHHHHh
Q 015513 168 SNENKALVDHHNQDLIGALMWVLQ 191 (405)
Q Consensus 168 ~~~~~~~i~~~g~~~i~~Lv~lL~ 191 (405)
. ..-..+...+ .+..+++++.
T Consensus 96 ~-~~~~l~~~~~--~~~ll~~Ll~ 116 (361)
T PF07814_consen 96 G-LNMHLLLDRD--SLRLLLKLLK 116 (361)
T ss_pred C-cchhhhhchh--HHHHHHHHhc
Confidence 3 3334444444 6666677777
No 286
>PLN02195 cellulose synthase A
Probab=77.12 E-value=1.7 Score=46.88 Aligned_cols=45 Identities=13% Similarity=0.190 Sum_probs=35.0
Q ss_pred cCcCCcc-----cCCCcccc--CCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 11 ICPISLQ-----IMKDPVTA--ITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 11 ~Cpi~~~-----~m~dPv~~--~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
.|.||++ .+-+|.+. .||.-.||.|.+ +-.+.|+..||.|+..+.
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye-yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLE-YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhh-hhhhcCCccCCccCCccc
Confidence 6999997 45567766 499889999984 544446889999998876
No 287
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=76.95 E-value=44 Score=28.17 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCCchhh-HHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHH
Q 015513 154 LEEALRILSLVWSPSNEN-KALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKE 232 (405)
Q Consensus 154 ~e~A~~~L~~L~~~~~~~-~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~ 232 (405)
.-.++.+|..|-...++. ..++...| .++.++.+..+.. .+...+..++.+|-.-+.+...+..|. ..+++-
T Consensus 60 ~i~~~~~l~~lfp~~~dv~~~l~~~eg--~~~~l~~~~~~~~--~~~~~~~~~lell~aAc~d~~~r~~I~---~~~~~~ 132 (157)
T PF11701_consen 60 LIIAFSALTALFPGPPDVGSELFLSEG--FLESLLPLASRKS--KDRKVQKAALELLSAACIDKSCRTFIS---KNYVSW 132 (157)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHHCCTTT--HHHHHHHHHH-CT--S-HHHHHHHHHHHHHHTTSHHHHHCCH---HHCHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhhh--HHHHHHHHHhccc--CCHHHHHHHHHHHHHHHccHHHHHHHH---HHHHHH
Confidence 677777777776555544 45555555 8999998888211 666666666666666555544444443 467888
Q ss_pred HHHHHhhcCChH-HHHHHHHHHH
Q 015513 233 MVKLLKENISQQ-ATKSGLHVLL 254 (405)
Q Consensus 233 Lv~lL~~~~~~~-~~~~a~~aL~ 254 (405)
|-++++.+.+.. .+..|+-.|.
T Consensus 133 L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 133 LKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHHccccchHHHHHHHHHHHh
Confidence 988887653444 5655555543
No 288
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=76.46 E-value=9.7 Score=31.47 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=61.9
Q ss_pred chHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHH---HHHHHHHHHHHhhcccC
Q 015513 314 AIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKY---LKDRAKEILRLHSNVWN 390 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~---~k~~A~~ll~~l~~~~~ 390 (405)
++..|-+.|...++..+-.|+.+|-.+.++++. ....++.....+..|..++....... +|+++..+++.......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~-~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~ 121 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGP-RFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFK 121 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH-HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHC
Confidence 566777777777788899999999999988764 47777777788999999887655444 89999999998887764
Q ss_pred CCC
Q 015513 391 NSP 393 (405)
Q Consensus 391 ~~~ 393 (405)
..|
T Consensus 122 ~~~ 124 (140)
T PF00790_consen 122 SDP 124 (140)
T ss_dssp TST
T ss_pred CCC
Confidence 443
No 289
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=76.38 E-value=1.9 Score=39.84 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=31.7
Q ss_pred cccCcCCcccCCC----ccccCCCCcccHHHHHHHHhcCCCCCCCCCCC
Q 015513 9 YFICPISLQIMKD----PVTAITGISYDRESIEKWLKTAKDTTCPVTKQ 53 (405)
Q Consensus 9 ~~~Cpi~~~~m~d----Pv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~ 53 (405)
++-||||.+.+.+ |..++|||+-=..|.++.... +.+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~--~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE--GYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc--CCCCCcccc
Confidence 4569999977654 778899998655666655543 388999976
No 290
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=76.18 E-value=82 Score=30.90 Aligned_cols=96 Identities=9% Similarity=0.158 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhhc--CChHHHHHHHHHHHHhccCCc-hhHHHHhhcchHHHHHHhh-cC--CCCCcHHHHHHHHHHHhc
Q 015513 227 LDFFKEMVKLLKEN--ISQQATKSGLHVLLQACPMGG-NRVKITEANAVFELIELEL-TK--PEKSTTELIFNLLAQLCS 300 (405)
Q Consensus 227 ~g~i~~Lv~lL~~~--~~~~~~~~a~~aL~~L~~~~~-n~~~~v~~g~v~~Lv~lL~-~~--~~~~~~e~a~~~L~~L~~ 300 (405)
...+..|..++++. ..+.+-..|+..+..+-.++. .-..+.++|.++.+++.+. .+ ++.++--..-.+|..||-
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 34556677777764 356778888888888888776 5555678999999999998 43 133444455568888999
Q ss_pred CHhhHHHHHhcccchHHHHHHHH
Q 015513 301 CADGRLKFREHAGAIAMVTKRLL 323 (405)
Q Consensus 301 ~~~~~~~i~~~~g~i~~Lv~~l~ 323 (405)
+.+|.+++.. .+.++.+++.+.
T Consensus 185 N~~Gl~~~~~-~~~l~~~f~if~ 206 (379)
T PF06025_consen 185 NNRGLEKVKS-SNPLDKLFEIFT 206 (379)
T ss_pred CHHHHHHHHh-cChHHHHHHHhC
Confidence 9999999976 579999999443
No 291
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=76.15 E-value=70 Score=30.08 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=98.2
Q ss_pred chhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhh-------
Q 015513 151 TTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLES------- 223 (405)
Q Consensus 151 ~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~------- 223 (405)
...++.|+..|...+.-+.+ ++.. .++.+...+.. ++.+++..|+.+|..+.........-.
T Consensus 41 ~~vR~~al~cLGl~~Lld~~----~a~~---~l~l~~~~~~~----~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~ 109 (298)
T PF12719_consen 41 PAVRELALKCLGLCCLLDKE----LAKE---HLPLFLQALQK----DDEEVKITALKALFDLLLTHGIDIFDSESDNDES 109 (298)
T ss_pred HHHHHHHHHHHHHHHHhChH----HHHH---HHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHcCchhccchhccCcc
Confidence 35689999999887765432 2222 67788888876 799999999999999875433221111
Q ss_pred cccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCC---CCCcHHHHHHHHHHHhc
Q 015513 224 TLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKP---EKSTTELIFNLLAQLCS 300 (405)
Q Consensus 224 ~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~---~~~~~e~a~~~L~~L~~ 300 (405)
......+..+.+.|.+. +++++..|+..+..|-.++.... ...++..|+-+-.+.. +..++..-..-+-..|.
T Consensus 110 ~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~ 185 (298)
T PF12719_consen 110 VDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYAS 185 (298)
T ss_pred chHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHc
Confidence 01235777888888887 88999999999999876554332 2345555665555431 22344444444555564
Q ss_pred C-HhhHHHHHhcccchHHHHHHHHcc
Q 015513 301 C-ADGRLKFREHAGAIAMVTKRLLRV 325 (405)
Q Consensus 301 ~-~~~~~~i~~~~g~i~~Lv~~l~~~ 325 (405)
. .+++..+ . ...+|.+-. +...
T Consensus 186 s~~~~Q~~l-~-~~f~~~l~~-~~~~ 208 (298)
T PF12719_consen 186 SSPENQERL-A-EAFLPTLRT-LSNA 208 (298)
T ss_pred CCHHHHHHH-H-HHHHHHHHH-HHhC
Confidence 4 4455554 3 346676665 4443
No 292
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.11 E-value=1.3e+02 Score=33.03 Aligned_cols=128 Identities=12% Similarity=0.024 Sum_probs=76.1
Q ss_pred hchHHHHHHHHHhhccCC----CchhHHHHHHHHHhcCC---CchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHH
Q 015513 132 AFVVRALVLFIITSYKGN----KTTGLEEALRILSLVWS---PSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTS 204 (405)
Q Consensus 132 ~g~v~~Lv~lL~~~~~~~----~~~~~e~A~~~L~~L~~---~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~ 204 (405)
.|.++.+++.|.+..... +....+-|+.++.+|+. .....+..+..- .+..+.-.+++ ...-.|.+
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f---lv~hVfP~f~s----~~g~Lrar 481 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF---LVNHVFPEFQS----PYGYLRAR 481 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH---HHHHhhHhhcC----chhHHHHH
Confidence 478888899887432221 12335667777776651 111122222111 23333344455 66678899
Q ss_pred HHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhh
Q 015513 205 AMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEA 269 (405)
Q Consensus 205 A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~ 269 (405)
|++++..+++.+=....+. ..+++...+.|.+..+..++-.|+-||..+-++.+....-+.+
T Consensus 482 ac~vl~~~~~~df~d~~~l---~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~ 543 (1010)
T KOG1991|consen 482 ACWVLSQFSSIDFKDPNNL---SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA 543 (1010)
T ss_pred HHHHHHHHHhccCCChHHH---HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence 9999999986542222222 3667777777774337889999999999988866544333443
No 293
>PLN02189 cellulose synthase
Probab=76.00 E-value=1.8 Score=47.09 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=33.8
Q ss_pred cCcCCccc-----CCCcccc--CCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 11 ICPISLQI-----MKDPVTA--ITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 11 ~Cpi~~~~-----m~dPv~~--~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
+|+||++- .-+|.+. .||.-.||.|.| +-.+.|+..||.|+..+.
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cye-yer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE-YERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhcCCccCcccCCchh
Confidence 89999975 3456655 388889999985 433345889999998765
No 294
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=75.96 E-value=0.91 Score=37.90 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=18.0
Q ss_pred CcccCcCCcccCCCccccCCC
Q 015513 8 QYFICPISLQIMKDPVTAITG 28 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~~~g 28 (405)
++.+||||++.-.+.|++-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 467999999999999988654
No 295
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=75.62 E-value=1.2 Score=41.38 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=19.0
Q ss_pred cccCcCCcccCC--C-ccccCCCCcccHH
Q 015513 9 YFICPISLQIMK--D-PVTAITGISYDRE 34 (405)
Q Consensus 9 ~~~Cpi~~~~m~--d-Pv~~~~g~~~~r~ 34 (405)
.|.||+|+..|. + ...-+.||+|+..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 389999999985 2 2344678988764
No 296
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=75.36 E-value=19 Score=29.43 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhh--cCChHHHHHHHHHHHHhccC
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKE--NISQQATKSGLHVLLQACPM 259 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~--~~~~~~~~~a~~aL~~L~~~ 259 (405)
++..|-+-|.+ +++..+..|+.+|..+..+.......-+.+..++..|++++.. ..++.+++.++..|.+.+..
T Consensus 38 a~raL~krl~~----~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKY----GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcC----CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 67777788887 8999999999999999876544222211355888889999986 45788999999999887763
No 297
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.14 E-value=34 Score=32.20 Aligned_cols=134 Identities=12% Similarity=0.156 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc-hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHH
Q 015513 229 FFKEMVKLLKENISQQATKSGLHVLLQACPMGG-NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLK 307 (405)
Q Consensus 229 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~-n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~ 307 (405)
++...++.|.+. +++.+-.++..|+.|+..+. ...-+. .-++..+++-++.. ...+...|+.+++-+...-.+...
T Consensus 89 al~~~l~~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 89 ALKQALKKLSSD-DWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHhchH-HHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666665 77778888888888876442 222222 23556666666553 456778888888888754333222
Q ss_pred HHhcccchHHHHHHHHccChh----hhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHH
Q 015513 308 FREHAGAIAMVTKRLLRVSPA----TNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKE 380 (405)
Q Consensus 308 i~~~~g~i~~Lv~~l~~~s~~----~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ 380 (405)
- ....++..|+..+.. ..+.|-.+|.++.+...- +-+++.|+..++ +..++++.+++.
T Consensus 166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp---------~~~L~~L~~~~~-~~n~r~r~~a~~ 227 (334)
T KOG2933|consen 166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP---------QKLLRKLIPILQ-HSNPRVRAKAAL 227 (334)
T ss_pred H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh---------HHHHHHHHHHHh-hhchhhhhhhhc
Confidence 1 233344434333322 267788888888765331 224555555555 446666666654
No 298
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=75.01 E-value=2.5 Score=28.61 Aligned_cols=26 Identities=23% Similarity=0.524 Sum_probs=22.6
Q ss_pred ccCcCCcccC--CCcccc--CCCCcccHHH
Q 015513 10 FICPISLQIM--KDPVTA--ITGISYDRES 35 (405)
Q Consensus 10 ~~Cpi~~~~m--~dPv~~--~~g~~~~r~~ 35 (405)
-.|++|++.| .|.+++ .||-.|=|.|
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C 35 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDC 35 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHH
Confidence 4799999999 788877 4999999998
No 299
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=74.77 E-value=2.3 Score=33.50 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=11.5
Q ss_pred CCCCcccCcCCcccCCC
Q 015513 5 EVPQYFICPISLQIMKD 21 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~d 21 (405)
++=...+||-|+.-|.|
T Consensus 5 elGtKR~Cp~CG~kFYD 21 (108)
T PF09538_consen 5 ELGTKRTCPSCGAKFYD 21 (108)
T ss_pred ccCCcccCCCCcchhcc
Confidence 34445788888877665
No 300
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=74.27 E-value=3.3 Score=35.92 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=32.1
Q ss_pred CCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 015513 7 PQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTHN 78 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~~ 78 (405)
+..|.||-|+.-+ ||+- ..+ . .+.||.|+.++...+.-..-..|++.|+....+-
T Consensus 115 ~~~Y~Cp~C~~ry----------tf~e-----A~~-~-~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~ 169 (178)
T PRK06266 115 NMFFFCPNCHIRF----------TFDE-----AME-Y-GFRCPQCGEMLEEYDNSELIKELKEQIKELEEEL 169 (178)
T ss_pred CCEEECCCCCcEE----------eHHH-----Hhh-c-CCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHh
Confidence 4568899887422 3432 222 2 5899999999865222222345666666665543
No 301
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=73.69 E-value=28 Score=28.73 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhcc--chhhhcccHHHHHHHHHHHhhcCChH---HHHHHHHHHHHh
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASK--GLLESTLNLDFFKEMVKLLKENISQQ---ATKSGLHVLLQA 256 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~--~~~i~~~~~g~i~~Lv~lL~~~~~~~---~~~~a~~aL~~L 256 (405)
++..|.+-|.+ +++..+..|+.+|..+..+... ...+ .+..++..|++++.+..... +++.++..|...
T Consensus 43 a~~~l~krl~~----~~~~vq~~aL~lld~lvkNcg~~f~~ev--~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 43 AARALRKRLKH----GNPNVQLLALTLLDALVKNCGPRFHREV--ASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHHHHHHHTT----SSHHHHHHHHHHHHHHHHHSHHHHHHHH--TSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC----CCHHHHHHHHHHHHHHHHcCCHHHHHHH--hHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 67777788887 8999999999999999876533 2333 36789999999998764444 788888887666
Q ss_pred cc
Q 015513 257 CP 258 (405)
Q Consensus 257 ~~ 258 (405)
+.
T Consensus 117 ~~ 118 (140)
T PF00790_consen 117 AE 118 (140)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 302
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.56 E-value=1.3e+02 Score=32.03 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=11.9
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcc
Q 015513 233 MVKLLKENISQQATKSGLHVLLQACP 258 (405)
Q Consensus 233 Lv~lL~~~~~~~~~~~a~~aL~~L~~ 258 (405)
.+++|.++ +.++++.++.....|++
T Consensus 322 vLrvLss~-dldvr~Ktldi~ldLvs 346 (948)
T KOG1058|consen 322 VLRVLSSP-DLDVRSKTLDIALDLVS 346 (948)
T ss_pred HHHHcCcc-cccHHHHHHHHHHhhhh
Confidence 33344443 45555555555555544
No 303
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=73.16 E-value=1.5e+02 Score=32.53 Aligned_cols=132 Identities=14% Similarity=0.108 Sum_probs=86.4
Q ss_pred HHHHHHHHHhcCCCchhh-HHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHH
Q 015513 154 LEEALRILSLVWSPSNEN-KALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKE 232 (405)
Q Consensus 154 ~e~A~~~L~~L~~~~~~~-~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~ 232 (405)
+-.|+.+|..++.+.-.. ...+ ++++++.+...++. .....+.....++..|..........- .-.-++..
T Consensus 626 Rl~AvkAlt~Ia~S~l~i~l~~~---l~~il~~l~~flrK----~~r~lr~~~l~a~~~L~~~~~~~~~~~-~~e~vL~e 697 (1233)
T KOG1824|consen 626 RLTAVKALTLIAMSPLDIDLSPV---LTEILPELASFLRK----NQRALRLATLTALDKLVKNYSDSIPAE-LLEAVLVE 697 (1233)
T ss_pred HHHHHHHHHHHHhccceeehhhh---HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHHHH
Confidence 677888888887554221 1111 11378899999987 555666666666666655442222111 11234555
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHH
Q 015513 233 MVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQ 297 (405)
Q Consensus 233 Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~ 297 (405)
+-.|+... +..+.+.|+..|..+..........+..-+++.++.++++. -++..|+.++..
T Consensus 698 l~~Lises-dlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp---llqg~al~~~l~ 758 (1233)
T KOG1824|consen 698 LPPLISES-DLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSP---LLQGGALSALLL 758 (1233)
T ss_pred hhhhhhHH-HHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCc---cccchHHHHHHH
Confidence 55666666 77889999999999998887777777778999999999863 555556555544
No 304
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=73.03 E-value=2 Score=35.91 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCC
Q 015513 44 KDTTCPVTKQPLPR 57 (405)
Q Consensus 44 ~~~~cP~~~~~~~~ 57 (405)
+.+.||.|+..+..
T Consensus 122 ~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 122 GTFTCPRCGEELEE 135 (147)
T ss_pred CcEECCCCCCEEEE
Confidence 35789999998754
No 305
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=72.52 E-value=26 Score=38.97 Aligned_cols=108 Identities=15% Similarity=0.078 Sum_probs=74.7
Q ss_pred HHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc-----
Q 015513 184 GALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP----- 258 (405)
Q Consensus 184 ~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~----- 258 (405)
+.+...+++ -...+.+.+|+.+|..|+..-+....+ ..++|-+|.+++++ ..+++..|+.+|..+-.
T Consensus 425 s~lts~IR~---lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~~ 496 (1431)
T KOG1240|consen 425 SVLTSCIRA---LKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDS-EADVRATALETLTELLALVRDI 496 (1431)
T ss_pred HHHHHHHHh---hhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccCC
Confidence 334444443 156788999999999998654433332 26789999999998 88999999999887654
Q ss_pred CCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc
Q 015513 259 MGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS 300 (405)
Q Consensus 259 ~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~ 300 (405)
.+.+...+.+. .+|.|-.++.+.....++-.-+.-|+.||.
T Consensus 497 ~~~daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 497 PPSDANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred CcccchhhHhh-hhhhhHhhhccCccceehhhHHhhHHHHHH
Confidence 22356666665 888888888874244555555556666654
No 306
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=72.39 E-value=81 Score=29.12 Aligned_cols=74 Identities=22% Similarity=0.186 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHH
Q 015513 154 LEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEM 233 (405)
Q Consensus 154 ~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~L 233 (405)
+.++..++..|-+. .+||.|.+.|.... .++-+|..|+.+|..++. ..+++.|
T Consensus 204 rhEvAfVfGQl~s~-------------~ai~~L~k~L~d~~--E~pMVRhEaAeALGaIa~------------e~~~~vL 256 (289)
T KOG0567|consen 204 RHEVAFVFGQLQSP-------------AAIPSLIKVLLDET--EHPMVRHEAAEALGAIAD------------EDCVEVL 256 (289)
T ss_pred HHHHHHHHhhccch-------------hhhHHHHHHHHhhh--cchHHHHHHHHHHHhhcC------------HHHHHHH
Confidence 56777777665311 17999998887543 678899999999998754 3567788
Q ss_pred HHHHhhcCChHHHHHHHHHHHH
Q 015513 234 VKLLKENISQQATKSGLHVLLQ 255 (405)
Q Consensus 234 v~lL~~~~~~~~~~~a~~aL~~ 255 (405)
.+.+.+. ++-+++.+.-+|.-
T Consensus 257 ~e~~~D~-~~vv~esc~valdm 277 (289)
T KOG0567|consen 257 KEYLGDE-ERVVRESCEVALDM 277 (289)
T ss_pred HHHcCCc-HHHHHHHHHHHHHH
Confidence 8888876 56666666665543
No 307
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=72.20 E-value=1.3e+02 Score=31.46 Aligned_cols=179 Identities=10% Similarity=0.102 Sum_probs=96.1
Q ss_pred cHHhHHHHHHHHHHHHhhhccchhhhc--ccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHH
Q 015513 198 HVAVKTSAMIVLKMVLELASKGLLEST--LNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFEL 275 (405)
Q Consensus 198 ~~~~~~~A~~~L~~L~~~~~~~~~i~~--~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~L 275 (405)
+.+.+--|..+|+.+..+......... ..+.++..|+..+. . ++.-+-.++++|.|+-.+.-++..+... ...+
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~-~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i 632 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-A-DPANQLLVVRCLANLFSNPAGRELFMSR--LESI 632 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-c-chhHHHHHHHHHHHhccCHHHHHHHHHH--HHHH
Confidence 577788888888888776654443330 12335556666655 3 6777888999999999987777776553 2222
Q ss_pred HHHh---hcCCCCCcHHHHHHHHHHHhcC-HhhHHHHHhcccchHHHHHHHHcc--ChhhhHHHHHHHHHhcccCCCHHH
Q 015513 276 IELE---LTKPEKSTTELIFNLLAQLCSC-ADGRLKFREHAGAIAMVTKRLLRV--SPATNDRAVHILSSISKFSATYEV 349 (405)
Q Consensus 276 v~lL---~~~~~~~~~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~~--s~~~~e~a~~~L~~L~~~~~~~~~ 349 (405)
...+ .+.++..++........|++.. ..... ..++.+.|...+... ....-|...++|.+|.+....+..
T Consensus 633 ~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~ 708 (745)
T KOG0301|consen 633 LDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDAS 708 (745)
T ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHH
Confidence 2222 2222344444333333344321 11111 134555555544332 112225555555555554333334
Q ss_pred HHHHHhcChHHHHHHHHhcc-CcHHHHHHHHHHHHH
Q 015513 350 VLEMLSVGAVSKLCMVTQAD-CEKYLKDRAKEILRL 384 (405)
Q Consensus 350 ~~~~~~~G~v~~Ll~ll~~~-~~~~~k~~A~~ll~~ 384 (405)
...+.+.-.+..+..-+... ..+..+.-|..++++
T Consensus 709 ~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~~il~~ 744 (745)
T KOG0301|consen 709 VIQLAKNRSVDSIAKKLKEAVSNPSGKNIARDILSL 744 (745)
T ss_pred HHHHHHhcCHHHHHHHHHHhccCchhhHHHHHHHhc
Confidence 45554444566666666542 356677777776654
No 308
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.12 E-value=19 Score=37.67 Aligned_cols=103 Identities=18% Similarity=0.074 Sum_probs=64.1
Q ss_pred hcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHH
Q 015513 269 ANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYE 348 (405)
Q Consensus 269 ~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~ 348 (405)
+|.+..|++-..+. +..++-..+.+|..|......+...+- .+....+...+...-+.++-.|+-+|..+-....++
T Consensus 84 ~~~f~hlLRg~Esk-dk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESK-DKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHHhcccCc-chhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence 45666666666554 788899999999998764333333222 233344444344444556666666666665433332
Q ss_pred HHHHHHhcChHHHHHHHHhccCcHHHHHHHHH
Q 015513 349 VVLEMLSVGAVSKLCMVTQADCEKYLKDRAKE 380 (405)
Q Consensus 349 ~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ 380 (405)
+..++..+..++|.++++++|+.|-.
T Consensus 161 ------e~~v~n~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 161 ------ECPVVNLLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred ------cccHHHHHHHHHhcCCcHHHHHHHHH
Confidence 13467788899999999999987643
No 309
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=72.08 E-value=2.5 Score=28.43 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=20.9
Q ss_pred CcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQP 54 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~ 54 (405)
+|+.||+|+.--++-+--.+ -+.+ -.-.||.|++.
T Consensus 3 ~Wi~CP~CgnKTR~kir~DT-----------~LkN-fPlyCpKCK~E 37 (55)
T PF14205_consen 3 EWILCPICGNKTRLKIREDT-----------VLKN-FPLYCPKCKQE 37 (55)
T ss_pred eEEECCCCCCccceeeecCc-----------eecc-ccccCCCCCce
Confidence 57899999965555432111 0111 14579999875
No 310
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=71.77 E-value=2.4 Score=46.25 Aligned_cols=45 Identities=20% Similarity=0.400 Sum_probs=33.9
Q ss_pred cCcCCccc-----CCCcccc--CCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 11 ICPISLQI-----MKDPVTA--ITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 11 ~Cpi~~~~-----m~dPv~~--~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
.|.||++- .-||.+. .||--.||.|.| +-.+.|+..||.|+..+.
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCCchh
Confidence 89999974 3456665 488889999985 433346889999998765
No 311
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=71.46 E-value=4.2 Score=26.15 Aligned_cols=40 Identities=13% Similarity=0.416 Sum_probs=21.0
Q ss_pred CcCCcccCCCccccC---CCCcccHHHHHHHHhcCCCCCCCCC
Q 015513 12 CPISLQIMKDPVTAI---TGISYDRESIEKWLKTAKDTTCPVT 51 (405)
Q Consensus 12 Cpi~~~~m~dPv~~~---~g~~~~r~~I~~~~~~~~~~~cP~~ 51 (405)
|-+|.++..-=+.-+ |+-.+=..|++.+|.......||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 456666655555443 7777888899999976433469986
No 312
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.45 E-value=1.1e+02 Score=32.77 Aligned_cols=92 Identities=11% Similarity=0.142 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHH
Q 015513 242 SQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKR 321 (405)
Q Consensus 242 ~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~ 321 (405)
++-+|+.|+.||-.|=+-+ . . -+.-.+..+=.||.+. +..+...|+.+....| ++. -.++ | +-...|-++
T Consensus 156 s~yVRk~AA~AIpKLYsLd--~-e-~k~qL~e~I~~LLaD~-splVvgsAv~AF~evC--Per-ldLI-H-knyrklC~l 225 (968)
T KOG1060|consen 156 SPYVRKTAAHAIPKLYSLD--P-E-QKDQLEEVIKKLLADR-SPLVVGSAVMAFEEVC--PER-LDLI-H-KNYRKLCRL 225 (968)
T ss_pred cHHHHHHHHHhhHHHhcCC--h-h-hHHHHHHHHHHHhcCC-CCcchhHHHHHHHHhc--hhH-HHHh-h-HHHHHHHhh
Confidence 6677777777765554321 1 1 1123344444444443 6667777777777765 332 2222 1 245556665
Q ss_pred HHccChhhhHHHHHHHHHhccc
Q 015513 322 LLRVSPATNDRAVHILSSISKF 343 (405)
Q Consensus 322 l~~~s~~~~e~a~~~L~~L~~~ 343 (405)
|....+..+-..+..|..-|+.
T Consensus 226 l~dvdeWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 226 LPDVDEWGQVVLINMLTRYARH 247 (968)
T ss_pred ccchhhhhHHHHHHHHHHHHHh
Confidence 5455566677777777666654
No 313
>PLN02436 cellulose synthase A
Probab=70.94 E-value=2.7 Score=45.80 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=33.8
Q ss_pred cCcCCccc-----CCCcccc--CCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 11 ICPISLQI-----MKDPVTA--ITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 11 ~Cpi~~~~-----m~dPv~~--~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
.|.||++- .-||.+. .||.-.||.|.+ +-.+.|+..||.|+..+.
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye-yer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCYE-YERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhcCCccCcccCCchh
Confidence 89999964 3446666 488889999985 433345789999998765
No 314
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=70.72 E-value=29 Score=28.67 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhh-----cCChHHHHHHHHHHHHh
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKE-----NISQQATKSGLHVLLQA 256 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~-----~~~~~~~~~a~~aL~~L 256 (405)
++..+.+-|.+ +++..+..|..+|..+..+-......-+.+-+++..|++++.. ..+..++...+..|..-
T Consensus 39 a~rai~krl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 39 AVRLLAHKIQS----PQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred HHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 67777788887 8899999999999998876544332221467899999999964 14678888888888766
Q ss_pred cc
Q 015513 257 CP 258 (405)
Q Consensus 257 ~~ 258 (405)
+.
T Consensus 115 ~~ 116 (139)
T cd03567 115 TL 116 (139)
T ss_pred HH
Confidence 54
No 315
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=70.05 E-value=1.6e+02 Score=31.66 Aligned_cols=188 Identities=11% Similarity=0.003 Sum_probs=96.9
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
.+|.++..++. ..+.++.+-.+.+..+-...+..-.-. .....++.++.+-... ...++.+..+.+..++....
T Consensus 438 llp~~~~~l~d----e~~~V~lnli~~ls~~~~v~~v~g~~~-~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~ 511 (759)
T KOG0211|consen 438 LLPLLIGNLKD----EDPIVRLNLIDKLSLLEEVNDVIGIST-VSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG 511 (759)
T ss_pred cChhhhhhcch----hhHHHHHhhHHHHHHHHhccCcccchh-hhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh
Confidence 34556666665 778888887776644432222111111 3456788888887766 78899999999888887543
Q ss_pred hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhc
Q 015513 262 NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSIS 341 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~ 341 (405)
..+.+.-..+.+..-+.+. ...+++.|+..|..|+..-...... . --++.++......+-..+-..+.++..|+
T Consensus 512 --~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~~w~~-~--~~i~k~L~~~~q~~y~~R~t~l~si~~la 585 (759)
T KOG0211|consen 512 --VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGSEWAR-L--EEIPKLLAMDLQDNYLVRMTTLFSIHELA 585 (759)
T ss_pred --hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCcchhH-H--HhhHHHHHHhcCcccchhhHHHHHHHHHH
Confidence 2333322222222223222 3467788888887777532222221 1 13455544333322222222233333333
Q ss_pred ccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 342 KFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 342 ~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
...+.+ +...-.++.+..+.. +..+.+|=+++..|.-+.+
T Consensus 586 ~v~g~e-----i~~~~Llp~~~~l~~-D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 586 EVLGQE-----ITCEDLLPVFLDLVK-DPVANVRINVAKHLPKILK 625 (759)
T ss_pred HHhccH-----HHHHHHhHHHHHhcc-CCchhhhhhHHHHHHHHHh
Confidence 322222 222234445545443 5666677777666665544
No 316
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=69.97 E-value=1.1e+02 Score=33.27 Aligned_cols=174 Identities=16% Similarity=0.111 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCch-hhHHhhcccchhHH
Q 015513 105 GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSN-ENKALVDHHNQDLI 183 (405)
Q Consensus 105 ~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~-~~~~~i~~~g~~~i 183 (405)
...+.+|+..+.....+.. ...+.|....+..+++....+.+..+...|+..|..++..-. ..+.... + ..
T Consensus 267 WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~--~--v~ 338 (815)
T KOG1820|consen 267 WKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK--N--VF 338 (815)
T ss_pred hHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH--h--hc
Confidence 3888899998877765332 122334444444444443334444456667777776654321 1223322 2 56
Q ss_pred HHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc-CC-c
Q 015513 184 GALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP-MG-G 261 (405)
Q Consensus 184 ~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~-~~-~ 261 (405)
+.+..-+.. .....+..+..++-..+.. . .-...++....+++++ ++..+......+..... .+ .
T Consensus 339 p~lld~lke----kk~~l~d~l~~~~d~~~ns-------~-~l~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 339 PSLLDRLKE----KKSELRDALLKALDAILNS-------T-PLSKMSEAILEALKGK-NPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred chHHHHhhh----ccHHHHHHHHHHHHHHHhc-------c-cHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHhhcCCc
Confidence 666666664 4555555555555554431 1 1125567788888988 88888776666554443 33 2
Q ss_pred hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc
Q 015513 262 NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS 300 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~ 300 (405)
+...-.-.+++|.++....+. +..++..|..++..+-.
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 222222246888888888774 78888888888877653
No 317
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=69.80 E-value=0.38 Score=34.35 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=22.0
Q ss_pred cccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 9 YFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
+..||.|++.| .-..|+-+|..|-.++.. ...||.|++++.
T Consensus 1 e~~CP~C~~~L----~~~~~~~~C~~C~~~~~~---~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQEL----EWQGGHYHCEACQKDYKK---EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBE----EEETTEEEETTT--EEEE---EEE-TTT-SB-E
T ss_pred CCcCCCCCCcc----EEeCCEEECcccccccee---cccCCCcccHHH
Confidence 46899999864 233478888888554422 247999999874
No 318
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=69.74 E-value=3.9 Score=24.58 Aligned_cols=10 Identities=40% Similarity=0.803 Sum_probs=7.9
Q ss_pred CCCCCCCCCC
Q 015513 45 DTTCPVTKQP 54 (405)
Q Consensus 45 ~~~cP~~~~~ 54 (405)
...||+|+.+
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 4689999874
No 319
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=69.65 E-value=1.2e+02 Score=30.01 Aligned_cols=187 Identities=11% Similarity=0.056 Sum_probs=105.1
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHH-hhc---CChHHHHHHHHHHHHhc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLL-KEN---ISQQATKSGLHVLLQAC 257 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL-~~~---~~~~~~~~a~~aL~~L~ 257 (405)
.+..++.+..+ ..+...+..++..+..|...-.... .. ..++..+..-+ ... ..+...+...|....|.
T Consensus 190 ll~~l~~~~~~---~~~~~~~~~~~~~la~LvNK~~~~~-~l---~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv 262 (415)
T PF12460_consen 190 LLQSLLNLALS---SEDEFSRLAALQLLASLVNKWPDDD-DL---DEFLDSLLQSISSSEDSELRPQALEILIWITKALV 262 (415)
T ss_pred HHHHHHHHHHc---CCChHHHHHHHHHHHHHHcCCCChh-hH---HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHH
Confidence 45556665554 2456666777777776654311111 11 13444444444 111 12233344444444444
Q ss_pred c-CCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcC-Hhh-------------HHHHHhcccchHHHHHHH
Q 015513 258 P-MGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSC-ADG-------------RLKFREHAGAIAMVTKRL 322 (405)
Q Consensus 258 ~-~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~-~~~-------------~~~i~~~~g~i~~Lv~~l 322 (405)
. +++... ..+..|+++|.+ +.+...++..+..|... ++- |+++.. -.+|.|++..
T Consensus 263 ~R~~~~~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~ 332 (415)
T PF12460_consen 263 MRGHPLAT-----ELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGF 332 (415)
T ss_pred HcCCchHH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHH
Confidence 3 222222 245668888854 46678888888888776 322 445543 2677887754
Q ss_pred HccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 323 LRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 323 ~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
...++..+.....+|..|.++-+..-...++- ..+|.|+.-|.. .+..++..+-.+|..+-+.
T Consensus 333 ~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~--~LlPLLlqsL~~-~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 333 KEADDEIKSNYLTALSHLLKNVPKSVLLPELP--TLLPLLLQSLSL-PDADVLLSSLETLKMILEE 395 (415)
T ss_pred hhcChhhHHHHHHHHHHHHhhCCHHHHHHHHH--HHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHc
Confidence 44444567788888888888766432222222 267777777764 3556888888888766653
No 320
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=69.52 E-value=1.1e+02 Score=29.27 Aligned_cols=222 Identities=14% Similarity=0.046 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhhHHhHHHHH-HhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHH
Q 015513 109 ISTLKKMEALAMENERNRKSLE-EAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALM 187 (405)
Q Consensus 109 ~~Al~~L~~l~~~~~~~r~~i~-~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv 187 (405)
.-|++.|.++.- .++.|..+- +.-.-..++..++..- +..+.|-..+-++..|+.+. ++.+.|.+.. +-+..|+
T Consensus 167 lfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~v--g~~qlQY~SL~~iw~lTf~~-~~aqdi~K~~-dli~dli 241 (432)
T COG5231 167 LFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYV--GVKQLQYNSLIIIWILTFSK-ECAQDIDKMD-DLINDLI 241 (432)
T ss_pred HHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHhcCH-HHHHHHHHHH-HHHHHHH
Confidence 345555555543 334444333 3334455677776542 22456788888888887654 5555555544 3677788
Q ss_pred HHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhh-cccHHHHHHHHHHHhh-cC-ChHHHHHHHH-------------
Q 015513 188 WVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLES-TLNLDFFKEMVKLLKE-NI-SQQATKSGLH------------- 251 (405)
Q Consensus 188 ~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~-~~~~g~i~~Lv~lL~~-~~-~~~~~~~a~~------------- 251 (405)
.+.+. .....+-.-++.++.++.+.. .+..|. ..-.|-+.+-|.+|.. ++ +.+.+...-.
T Consensus 242 ~iVk~---~~keKV~Rlc~~Iv~n~~dK~-pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~ 317 (432)
T COG5231 242 AIVKE---RAKEKVLRLCCGIVANVLDKS-PKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLC 317 (432)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHhccc-ccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhh
Confidence 88876 123445567778888887632 222222 0012324445555543 22 2222211100
Q ss_pred ----HHHHh-----ccC---------CchhHHHHh--hcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc-CHhhHHHHHh
Q 015513 252 ----VLLQA-----CPM---------GGNRVKITE--ANAVFELIELELTKPEKSTTELIFNLLAQLCS-CADGRLKFRE 310 (405)
Q Consensus 252 ----aL~~L-----~~~---------~~n~~~~v~--~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~-~~~~~~~i~~ 310 (405)
-+..| +-. ..|...+.+ ...+..|.++|+...+...-.-|+.=+..+.+ .+|++.-+..
T Consensus 318 ~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~K 397 (432)
T COG5231 318 IFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSK 397 (432)
T ss_pred HHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHH
Confidence 01111 111 126666665 45889999999986333345566766766664 5777776644
Q ss_pred cccchHHHHHHHHccChhhhHHHHHHHHHh
Q 015513 311 HAGAIAMVTKRLLRVSPATNDRAVHILSSI 340 (405)
Q Consensus 311 ~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L 340 (405)
-|+-..+++++-...++.+=.|+.++..+
T Consensus 398 -yg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 398 -YGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred -hhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 67778888855444456666666666554
No 321
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=69.46 E-value=3.5 Score=43.09 Aligned_cols=37 Identities=5% Similarity=-0.084 Sum_probs=30.7
Q ss_pred CCCcccCcCCcccCCCcc----ccC---CCCcccHHHHHHHHhc
Q 015513 6 VPQYFICPISLQIMKDPV----TAI---TGISYDRESIEKWLKT 42 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~dPv----~~~---~g~~~~r~~I~~~~~~ 42 (405)
.++.-.|++|..-+.+|| +.+ |+|.||..||..|.++
T Consensus 93 ~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~Dq 136 (1134)
T KOG0825|consen 93 TAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQ 136 (1134)
T ss_pred cccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHH
Confidence 355679999999999966 345 9999999999999864
No 322
>PHA03096 p28-like protein; Provisional
Probab=69.03 E-value=3.1 Score=38.87 Aligned_cols=43 Identities=21% Similarity=0.402 Sum_probs=29.4
Q ss_pred cCcCCcccCCC--------ccccCCCCcccHHHHHHHHhcC-CCCCCCCCCC
Q 015513 11 ICPISLQIMKD--------PVTAITGISYDRESIEKWLKTA-KDTTCPVTKQ 53 (405)
Q Consensus 11 ~Cpi~~~~m~d--------Pv~~~~g~~~~r~~I~~~~~~~-~~~~cP~~~~ 53 (405)
.|-||++.-.+ =++..|.|.||-.||..|-.+. ...+||.|+.
T Consensus 180 ~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 180 ICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 68888865443 1233699999999999997542 2345777654
No 323
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.80 E-value=3.4 Score=40.76 Aligned_cols=69 Identities=22% Similarity=0.235 Sum_probs=50.1
Q ss_pred CCCCcccCcCC-cccCCCcccc--CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 015513 5 EVPQYFICPIS-LQIMKDPVTA--ITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCT 76 (405)
Q Consensus 5 ~~~~~~~Cpi~-~~~m~dPv~~--~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~ 76 (405)
..++.+.||+| .+.|.|-.++ .|+.+||..||.+.+... .||.|++.-.....+.++..++..+.....
T Consensus 215 ~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~---~~~~c~~~~~~~~~~~~p~~~r~~~n~~~a 286 (448)
T KOG0314|consen 215 ELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISK---SMCVCGASNVLADDLLPPKTLRDTINRILA 286 (448)
T ss_pred cCCccccCceecchhhHHHHHhhhhhcccCCccccccccccc---cCCcchhhcccccccCCchhhHHHHHHHHh
Confidence 46888999999 8999999988 589999999999887543 344444322122567777778777665433
No 324
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=68.52 E-value=3.8 Score=34.79 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCC
Q 015513 45 DTTCPVTKQPLPR 57 (405)
Q Consensus 45 ~~~cP~~~~~~~~ 57 (405)
.+.||.|+.++..
T Consensus 128 ~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 128 NFTCPRCGAMLDY 140 (158)
T ss_pred CCcCCCCCCEeee
Confidence 5899999998854
No 325
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=68.28 E-value=7.4 Score=33.52 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHh
Q 015513 45 DTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTH 77 (405)
Q Consensus 45 ~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~ 77 (405)
.++||.|+..+...+.......+.+.++....+
T Consensus 132 ~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~ 164 (176)
T COG1675 132 GFTCPKCGEDLEEYDSSEEIEELESELDELEEE 164 (176)
T ss_pred CCCCCCCCchhhhccchHHHHHHHHHHHHHHHH
Confidence 389999999986523333445566666666554
No 326
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.90 E-value=1.8e+02 Score=31.44 Aligned_cols=57 Identities=7% Similarity=0.118 Sum_probs=40.4
Q ss_pred CchHHHHHHHHHhcch--hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhcc
Q 015513 90 LNKDQVRKLVRDLDSG--HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYK 147 (405)
Q Consensus 90 ~~~~~i~~lv~~l~~~--~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~ 147 (405)
++.+.....+..+.++ ..+-+++..|+.+.+.. +....+...+++......|++.++
T Consensus 724 ~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~Lkdeds 782 (982)
T KOG4653|consen 724 VDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDS 782 (982)
T ss_pred ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCc
Confidence 4455566666777664 78889999999998754 334455567888888888876543
No 327
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=67.69 E-value=51 Score=25.45 Aligned_cols=67 Identities=15% Similarity=0.082 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHH
Q 015513 226 NLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNL 294 (405)
Q Consensus 226 ~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~ 294 (405)
..+.+..|++.+... +....+.++..|..|..++.....+.+-|++..|-++= +..++..+...-.+
T Consensus 28 ~~~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr-~~~~~~~~~~id~i 94 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFP-PVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLR-PNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHH-hcCCHHHHHHHHHH
Confidence 446677788887776 56689999999999999999999999999999855543 32233434333333
No 328
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.67 E-value=5.3 Score=31.02 Aligned_cols=34 Identities=32% Similarity=0.385 Sum_probs=23.5
Q ss_pred CCCCcccCcCCcccCC----CccccC-CCCcccHHHHHH
Q 015513 5 EVPQYFICPISLQIMK----DPVTAI-TGISYDRESIEK 38 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~----dPv~~~-~g~~~~r~~I~~ 38 (405)
.+-..-+||-|+.-|. ||++.| ||.+|-++..+.
T Consensus 5 eLGtKridPetg~KFYDLNrdPiVsPytG~s~P~s~fe~ 43 (129)
T COG4530 5 ELGTKRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFEE 43 (129)
T ss_pred cccccccCccccchhhccCCCccccCcccccchHHHHHh
Confidence 3445568999987664 588876 888886665443
No 329
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.46 E-value=1.4e+02 Score=30.03 Aligned_cols=164 Identities=18% Similarity=0.094 Sum_probs=97.2
Q ss_pred hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchh-hHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHH
Q 015513 132 AFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNE-NKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLK 210 (405)
Q Consensus 132 ~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~-~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~ 210 (405)
.|....++..|.....+.+...+.-|+..|.+.+..-++ .+.... ..+..++.-|.. +.+.+++-.|+.+|.
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~----~~ldaii~gL~D---~~~~~V~leam~~Lt 325 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT----TQLDAIIRGLYD---DLNEEVQLEAMKCLT 325 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH----HHHHHHHHHHhc---CCccHHHHHHHHHHH
Confidence 466666666555444444445688899999999877333 222211 256666766665 367888889999888
Q ss_pred HHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc--CCchhHHHHh---hcchHHHHHHhhcCCCC
Q 015513 211 MVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP--MGGNRVKITE---ANAVFELIELELTKPEK 285 (405)
Q Consensus 211 ~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~--~~~n~~~~v~---~g~v~~Lv~lL~~~~~~ 285 (405)
.+.....+..... --..+.-.+..+.++. +++++-+|..+...|+. +.+.+..+++ .+..|.++. |.+. .
T Consensus 326 ~v~~~~~~~~l~~-~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllh-l~d~-~- 400 (533)
T KOG2032|consen 326 MVLEKASNDDLES-YLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLH-LQDP-N- 400 (533)
T ss_pred HHHHhhhhcchhh-hchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceee-eCCC-C-
Confidence 8876554443222 1123334566677777 88999999888888776 3345555553 244444443 3331 2
Q ss_pred CcHHHHHHHHHHHhcCHhhHHH
Q 015513 286 STTELIFNLLAQLCSCADGRLK 307 (405)
Q Consensus 286 ~~~e~a~~~L~~L~~~~~~~~~ 307 (405)
.....|+......|.-.-.|+.
T Consensus 401 p~va~ACr~~~~~c~p~l~rke 422 (533)
T KOG2032|consen 401 PYVARACRSELRTCYPNLVRKE 422 (533)
T ss_pred hHHHHHHHHHHHhcCchhHHHH
Confidence 2245677777776654444444
No 330
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=67.40 E-value=1.1e+02 Score=33.14 Aligned_cols=187 Identities=14% Similarity=0.108 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHH
Q 015513 152 TGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFK 231 (405)
Q Consensus 152 ~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~ 231 (405)
+.+.+|+.-+.....+. +..+.+...+.+-.++..... +.|..+...|+..|..++..-.....-. ..+.++
T Consensus 268 K~R~Eale~l~~~l~e~---~~~~~~~~~~ll~~~~ki~~k---DaN~~v~~~aa~~l~~ia~~lr~~~~~~--~~~v~p 339 (815)
T KOG1820|consen 268 KDRKEALEELVAILEEA---KKEIVKGYTGLLGILLKIRLK---DANINVVMLAAQILELIAKKLRPLFRKY--AKNVFP 339 (815)
T ss_pred HHHHHHHHHHHHHHhcc---ccccccCcchHHHHHHHHhcc---CcchhHHHHHHHHHHHHHHhcchhhHHH--HHhhcc
Confidence 34667776665554332 111222110134444454444 3677788889999988875432221111 236678
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhh----HHH
Q 015513 232 EMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADG----RLK 307 (405)
Q Consensus 232 ~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~----~~~ 307 (405)
.|.+-+.+. ...+++.+..++...+-.. .-.-..+.+++.+..+ .+.++......+.......+. +..
T Consensus 340 ~lld~lkek-k~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~~~~~~~~~~~t 411 (815)
T KOG1820|consen 340 SLLDRLKEK-KSELRDALLKALDAILNST------PLSKMSEAILEALKGK-NPQIKGECLLLLDRKLRKLGPKTVEKET 411 (815)
T ss_pred hHHHHhhhc-cHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHhhcCCcCcchhh
Confidence 888888876 6778888888877666411 1123556777888876 777788877777776543331 222
Q ss_pred HHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHh
Q 015513 308 FREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQ 367 (405)
Q Consensus 308 i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~ 367 (405)
+ .+.++.++..+-.....++..|..++..+.+..+ .+++.+++.-+.
T Consensus 412 ~---~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G----------e~~~~k~L~~~~ 458 (815)
T KOG1820|consen 412 V---KTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG----------EEVFKKLLKDLD 458 (815)
T ss_pred H---HHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHhhc
Confidence 2 1355666653323334566666666665555433 355666666655
No 331
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=67.19 E-value=1.2e+02 Score=29.12 Aligned_cols=208 Identities=11% Similarity=0.061 Sum_probs=131.6
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchh--hh--cccHHHHHHHHHHHhhc-CChHHHHHHHHHHHHh
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLL--ES--TLNLDFFKEMVKLLKEN-ISQQATKSGLHVLLQA 256 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~--i~--~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~L 256 (405)
.+..|+..|.. -+.+.+..++.+..++.....+... .+ +.. --+.++..|-.+ .+++..-.+...|+..
T Consensus 77 ll~~Li~~L~~----L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~--~~peil~~L~~gy~~~dial~~g~mlRec 150 (335)
T PF08569_consen 77 LLYLLIRNLPK----LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER--HRPEILDILLRGYENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHHHHHTGGG----S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT----THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhh----CCCcccccHHHHHHHHHhhccCCCCCchHHHHHh--CCHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 88889998987 8999999999999998765432221 11 011 113333333333 3566777788888888
Q ss_pred ccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHh-cCHhhHHHHHhc--ccchHHHHHHHHccChhhhHHH
Q 015513 257 CPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLC-SCADGRLKFREH--AGAIAMVTKRLLRVSPATNDRA 333 (405)
Q Consensus 257 ~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~-~~~~~~~~i~~~--~g~i~~Lv~~l~~~s~~~~e~a 333 (405)
..++.-.+.+.....+-.+.+.+... .=++...|..++..|- .+..--..++.. ...+....++|...+...+..+
T Consensus 151 ~k~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 151 IKHESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp TTSHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HhhHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 88877777888888888888887654 5567788888888854 344433343322 1233334443323345778889
Q ss_pred HHHHHHhcccCCCHHHHHHHHhcC-hHHHHHHHHhccCcHHHHHHHHHHHHHhhcccCCCCCcch
Q 015513 334 VHILSSISKFSATYEVVLEMLSVG-AVSKLCMVTQADCEKYLKDRAKEILRLHSNVWNNSPCIQV 397 (405)
Q Consensus 334 ~~~L~~L~~~~~~~~~~~~~~~~G-~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~~~~~ 397 (405)
+..|..|-....+..+...-+... -+..++.+|+ +.+..+|-.|--+++++..+.+.++.+..
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~-d~sk~Iq~eAFhvFKvFVANp~K~~~I~~ 293 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLR-DKSKNIQFEAFHVFKVFVANPNKPPPIVD 293 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH-SS-BHHHHH
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhc-CcchhhhHHHHHHHHHHHhCCCCChHHHH
Confidence 999999876655544555555444 4566666666 67889999999999999988776665544
No 332
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=67.00 E-value=3.5 Score=44.88 Aligned_cols=46 Identities=15% Similarity=0.325 Sum_probs=34.4
Q ss_pred ccCcCCccc-----CCCcccc--CCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 10 FICPISLQI-----MKDPVTA--ITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 10 ~~Cpi~~~~-----m~dPv~~--~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
-.|.||++- .-||.+. .||.-.||.|.+ +-.+.|+..||.|+..+.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cye-ye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYE-YERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCCchh
Confidence 379999974 4457666 488889999995 433346889999998765
No 333
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=66.80 E-value=4 Score=32.81 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=17.5
Q ss_pred CCCCcccCcCCcccCCC----ccccC-CCCcccH
Q 015513 5 EVPQYFICPISLQIMKD----PVTAI-TGISYDR 33 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~d----Pv~~~-~g~~~~r 33 (405)
..-...+||-|+.-|.| |++.| ||.+|..
T Consensus 5 elGtKr~Cp~cg~kFYDLnk~p~vcP~cg~~~~~ 38 (129)
T TIGR02300 5 DLGTKRICPNTGSKFYDLNRRPAVSPYTGEQFPP 38 (129)
T ss_pred hhCccccCCCcCccccccCCCCccCCCcCCccCc
Confidence 33445789999877755 55543 5555443
No 334
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=66.12 E-value=1.9 Score=38.32 Aligned_cols=47 Identities=11% Similarity=0.166 Sum_probs=35.2
Q ss_pred CCcccCcCCc-ccCCCcc----ccC-CCCcccHHHHHHHHhcCCCCCCC--CCCCC
Q 015513 7 PQYFICPISL-QIMKDPV----TAI-TGISYDRESIEKWLKTAKDTTCP--VTKQP 54 (405)
Q Consensus 7 ~~~~~Cpi~~-~~m~dPv----~~~-~g~~~~r~~I~~~~~~~~~~~cP--~~~~~ 54 (405)
-.+-.||+|. +.+-+|- +.| |=|..|-+|..+-|..+ .-.|| -|++-
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~G-pAqCP~~gC~kI 62 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRG-PAQCPYKGCGKI 62 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCC-CCCCCCccHHHH
Confidence 4456899998 5666664 225 99999999999999874 77899 56543
No 335
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=65.83 E-value=2.1e+02 Score=31.24 Aligned_cols=138 Identities=14% Similarity=0.047 Sum_probs=81.9
Q ss_pred HHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHH
Q 015513 155 EEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMV 234 (405)
Q Consensus 155 e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv 234 (405)
..-..+|...++.+++..... ++. ..|.++.+..+.+ .++.+...+-.++..|+....+-..+. .-.||.|+
T Consensus 548 ~llmE~Ls~vv~~dpef~as~-~sk--I~P~~i~lF~k~s--~DP~V~~~~qd~f~el~q~~~~~g~m~---e~~iPsli 619 (1005)
T KOG2274|consen 548 VLLMEALSSVVKLDPEFAASM-ESK--ICPLTINLFLKYS--EDPQVASLAQDLFEELLQIAANYGPMQ---ERLIPSLI 619 (1005)
T ss_pred HHHHHHHHHHhccChhhhhhh-hcc--hhHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHhhcchH---HHHHHHHH
Confidence 333346666666665533332 333 7788877666544 788888888889999987554433332 46799999
Q ss_pred HHHhhcC---ChHHHHHHHHHHHHhccCCc-hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc
Q 015513 235 KLLKENI---SQQATKSGLHVLLQACPMGG-NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS 300 (405)
Q Consensus 235 ~lL~~~~---~~~~~~~a~~aL~~L~~~~~-n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~ 300 (405)
..|.... .......|+..|--+..+.+ --....-.-++|++.+..-...|...-..+-.+|..+-.
T Consensus 620 sil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 620 SVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 9997651 24555566666665555432 112222234778888775433255555666666666544
No 336
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=65.06 E-value=1.1e+02 Score=27.68 Aligned_cols=150 Identities=11% Similarity=0.101 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCCCchhhHHhhcccchhHHHHHH-HHHhhh-cCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHH
Q 015513 154 LEEALRILSLVWSPSNENKALVDHHNQDLIGALM-WVLQWE-NNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFK 231 (405)
Q Consensus 154 ~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv-~lL~~~-~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~ 231 (405)
...|+.+|.-++++. +.|+....+. +|.++ ..|... .|..-.-.|..+..++..|..+++.-..-.+.....+|
T Consensus 117 vcnaL~lLQclaShP-etk~~Fl~Ah---iplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivP 192 (315)
T COG5209 117 VCNALNLLQCLASHP-ETKKVFLDAH---IPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVP 192 (315)
T ss_pred HHHHHHHHHHHhcCc-chheeeeecc---cceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHH
Confidence 467888888888775 6777777664 55433 333211 11133446788999999998876543322224568899
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHh----h----cchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHh
Q 015513 232 EMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITE----A----NAVFELIELELTKPEKSTTELIFNLLAQLCSCAD 303 (405)
Q Consensus 232 ~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~----~----g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~ 303 (405)
.+.+++..+ +.-.+..|.-.+..+-.++..-..+.+ . .++..++.-+-+.....+...++..-.+||..++
T Consensus 193 LcLrIme~g-SElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~ 271 (315)
T COG5209 193 LCLRIMELG-SELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPH 271 (315)
T ss_pred HHHHHHHhh-hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHh
Confidence 999999887 655666666666655555543222221 1 2333333333332255677788888888888888
Q ss_pred hHHHH
Q 015513 304 GRLKF 308 (405)
Q Consensus 304 ~~~~i 308 (405)
.|..+
T Consensus 272 aR~lL 276 (315)
T COG5209 272 ARALL 276 (315)
T ss_pred HHHHH
Confidence 77765
No 337
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=64.92 E-value=2.9 Score=27.50 Aligned_cols=40 Identities=20% Similarity=0.595 Sum_probs=21.7
Q ss_pred CcCCcccCCC--ccccCCCCc-----ccHHHHHHHHhcCCCCCCCCC
Q 015513 12 CPISLQIMKD--PVTAITGIS-----YDRESIEKWLKTAKDTTCPVT 51 (405)
Q Consensus 12 Cpi~~~~m~d--Pv~~~~g~~-----~~r~~I~~~~~~~~~~~cP~~ 51 (405)
|=||++.-.+ |.+.||+-+ .=+.|+++|+...+...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 3455543332 567776533 236799999986556678876
No 338
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.06 E-value=2.1e+02 Score=30.74 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=43.7
Q ss_pred CcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHH
Q 015513 197 RHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELI 276 (405)
Q Consensus 197 ~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv 276 (405)
.++-+|..|+.+|-.|=+-+. . .....++.+-.||.+. ++.+.-.|+.|.-.+|- ++-.++. +-...|-
T Consensus 155 ~s~yVRk~AA~AIpKLYsLd~--e----~k~qL~e~I~~LLaD~-splVvgsAv~AF~evCP---erldLIH-knyrklC 223 (968)
T KOG1060|consen 155 PSPYVRKTAAHAIPKLYSLDP--E----QKDQLEEVIKKLLADR-SPLVVGSAVMAFEEVCP---ERLDLIH-KNYRKLC 223 (968)
T ss_pred CcHHHHHHHHHhhHHHhcCCh--h----hHHHHHHHHHHHhcCC-CCcchhHHHHHHHHhch---hHHHHhh-HHHHHHH
Confidence 677788888888877743321 1 1233344444455555 78888888888777774 4444443 3345555
Q ss_pred HHhhc
Q 015513 277 ELELT 281 (405)
Q Consensus 277 ~lL~~ 281 (405)
.+|.+
T Consensus 224 ~ll~d 228 (968)
T KOG1060|consen 224 RLLPD 228 (968)
T ss_pred hhccc
Confidence 55543
No 339
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=64.03 E-value=9.7 Score=27.76 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=20.3
Q ss_pred ccCcCCcccC-----CCcccc--CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIM-----KDPVTA--ITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 10 ~~Cpi~~~~m-----~dPv~~--~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
-+|.||++-. -+|.+. .|+--.||.|.+--.++ |...||.|+.++..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErke-g~q~CpqCkt~ykr 63 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKE-GNQVCPQCKTRYKR 63 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHT-S-SB-TTT--B---
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhc-CcccccccCCCccc
Confidence 3799998643 235555 47777899998865555 57899999977643
No 340
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=62.92 E-value=4.3 Score=23.01 Aligned_cols=9 Identities=22% Similarity=0.379 Sum_probs=5.1
Q ss_pred cCcCCcccC
Q 015513 11 ICPISLQIM 19 (405)
Q Consensus 11 ~Cpi~~~~m 19 (405)
.||-|....
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 366666544
No 341
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=62.44 E-value=40 Score=35.31 Aligned_cols=105 Identities=12% Similarity=0.045 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhh-ccchhhhcccHHHHHHHHHHHhhc---CChHHHHHHHHHHHHhc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELA-SKGLLESTLNLDFFKEMVKLLKEN---ISQQATKSGLHVLLQAC 257 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~-~~~~~i~~~~~g~i~~Lv~lL~~~---~~~~~~~~a~~aL~~L~ 257 (405)
++..+..++.+ +.... ..|+.+|..|.... .. +...+..+..|++.. .++..+..|+-++..|.
T Consensus 396 av~~i~~~I~~----~~~~~-~ea~~~l~~l~~~~~~P-------t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv 463 (618)
T PF01347_consen 396 AVKFIKDLIKS----KKLTD-DEAAQLLASLPFHVRRP-------TEELLKELFELAKSPKVKNSPYLRETALLSLGSLV 463 (618)
T ss_dssp HHHHHHHHHHT----T-S-H-HHHHHHHHHHHHT------------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc----CCCCH-HHHHHHHHHHHhhcCCC-------CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHh
Confidence 56666677765 33332 34666676665432 11 335566666666542 35566777776666664
Q ss_pred c----CC------chhHHHHhhcchHHHHHHhhc---CCCCCcHHHHHHHHHHH
Q 015513 258 P----MG------GNRVKITEANAVFELIELELT---KPEKSTTELIFNLLAQL 298 (405)
Q Consensus 258 ~----~~------~n~~~~v~~g~v~~Lv~lL~~---~~~~~~~e~a~~~L~~L 298 (405)
. .. ......+..-+++.|...|.. ..+...+-.++.+|+|+
T Consensus 464 ~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~ 517 (618)
T PF01347_consen 464 HKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL 517 (618)
T ss_dssp HHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc
Confidence 3 31 111222334577888877762 12345566788888887
No 342
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=62.33 E-value=33 Score=36.99 Aligned_cols=149 Identities=17% Similarity=0.106 Sum_probs=90.5
Q ss_pred hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhc-ccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHH
Q 015513 132 AFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVD-HHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLK 210 (405)
Q Consensus 132 ~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~-~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~ 210 (405)
...+|.|++...... +.. +..=+.+|.++-.+.+ +..+. +-. ..+|.|+.-|+- .+...|..+..++.
T Consensus 866 ~~ivP~l~~~~~t~~--~~~--K~~yl~~LshVl~~vP--~~vllp~~~-~LlPLLLq~Ls~----~D~~v~vstl~~i~ 934 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAP--GSQ--KHNYLEALSHVLTNVP--KQVLLPQFP-MLLPLLLQALSM----PDVIVRVSTLRTIP 934 (1030)
T ss_pred HhhHHHHHHHhccCC--ccc--hhHHHHHHHHHHhcCC--HHhhccchh-hHHHHHHHhcCC----CccchhhhHhhhhh
Confidence 467788887776322 211 3333444444433333 23333 333 367777788876 88999999988888
Q ss_pred HHHhhhccchhhhcccHHHHHHHHHHHhhcCC--hHHHHHHHHHHHHhcc-CCchhHHHHhhcchHHHHHHhhcCCCCCc
Q 015513 211 MVLELASKGLLESTLNLDFFKEMVKLLKENIS--QQATKSGLHVLLQACP-MGGNRVKITEANAVFELIELELTKPEKST 287 (405)
Q Consensus 211 ~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~--~~~~~~a~~aL~~L~~-~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~ 287 (405)
-+......-...- -.-.++.|..+=++..+ ..++..|+.+|..|.. .+.+.-.--+..++.+|++.|.+. ..-+
T Consensus 935 ~~l~~~~tL~t~~--~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlV 1011 (1030)
T KOG1967|consen 935 MLLTESETLQTEH--LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLV 1011 (1030)
T ss_pred HHHHhccccchHH--HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHH
Confidence 8765543322111 11356666666555522 6789999999999998 555544444556788888888764 4456
Q ss_pred HHHHHHH
Q 015513 288 TELIFNL 294 (405)
Q Consensus 288 ~e~a~~~ 294 (405)
+++|+.+
T Consensus 1012 R~eAv~t 1018 (1030)
T KOG1967|consen 1012 RKEAVDT 1018 (1030)
T ss_pred HHHHHHH
Confidence 6666543
No 343
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=62.21 E-value=2.4 Score=38.81 Aligned_cols=51 Identities=20% Similarity=0.417 Sum_probs=26.9
Q ss_pred CCcccCcCCcccCCC-------------cccc-CCCCcccHHHHHHH-Hhc--C-CCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKD-------------PVTA-ITGISYDRESIEKW-LKT--A-KDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~d-------------Pv~~-~~g~~~~r~~I~~~-~~~--~-~~~~cP~~~~~~~~ 57 (405)
+.-|.|++|+.++.. |-.- -||--|.|-++.+= +.. + ..+.||.|++.|.+
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFAD 227 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFAD 227 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcc
Confidence 445677777766554 2211 24445554433321 111 1 13579999998865
No 344
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=62.14 E-value=5.2 Score=37.69 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=36.8
Q ss_pred CCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPL 55 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~ 55 (405)
+++-.|-||-+-..=--++||||..|..|--+.-.-.....||+|+..-
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 4557999999988888899999999999965542111146799998753
No 345
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=62.05 E-value=1e+02 Score=32.52 Aligned_cols=149 Identities=13% Similarity=0.097 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhhc-CChHHHHHHHHHHHHhccCCc---hhHH---HHh------hcc----hHHHHHHhhcCCCCCcHHH
Q 015513 228 DFFKEMVKLLKEN-ISQQATKSGLHVLLQACPMGG---NRVK---ITE------ANA----VFELIELELTKPEKSTTEL 290 (405)
Q Consensus 228 g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~L~~~~~---n~~~---~v~------~g~----v~~Lv~lL~~~~~~~~~e~ 290 (405)
|.+..|+..+.+. ..+..++.....|.+++.+.. +-+. ++. .|. ...++++|.+. +-.++..
T Consensus 240 ~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdse-s~tlRc~ 318 (1128)
T COG5098 240 GLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSE-SFTLRCC 318 (1128)
T ss_pred HHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhccc-chhHHHH
Confidence 5566667666654 245666777777888777542 1111 111 111 34567788764 4556677
Q ss_pred HHHHHHHHhcCHhhHHHHHhc-----ccchHHHHHHHHccChhhhHHHHHHHHHhcccCCC-HHHHHHHHhcChHHHHHH
Q 015513 291 IFNLLAQLCSCADGRLKFREH-----AGAIAMVTKRLLRVSPATNDRAVHILSSISKFSAT-YEVVLEMLSVGAVSKLCM 364 (405)
Q Consensus 291 a~~~L~~L~~~~~~~~~i~~~-----~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~-~~~~~~~~~~G~v~~Ll~ 364 (405)
.+.+.+|+...-....+.+++ +.-|..|++.+....+-++-.|+.++..++..+.- ..-+.++ +.....
T Consensus 319 ~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev-----~~lv~r 393 (1128)
T COG5098 319 FLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEV-----IRLVGR 393 (1128)
T ss_pred HHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHH-----HHHHHH
Confidence 777888877532211122121 11344455544445677888899999988876542 1233333 334445
Q ss_pred HHhccCcHHHHHHHHHHHH
Q 015513 365 VTQADCEKYLKDRAKEILR 383 (405)
Q Consensus 365 ll~~~~~~~~k~~A~~ll~ 383 (405)
-+| +.+..+|++|..++.
T Consensus 394 ~lq-Drss~VRrnaikl~S 411 (1128)
T COG5098 394 RLQ-DRSSVVRRNAIKLCS 411 (1128)
T ss_pred Hhh-hhhHHHHHHHHHHHH
Confidence 566 678889999988776
No 346
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=61.82 E-value=2.1e+02 Score=30.02 Aligned_cols=161 Identities=9% Similarity=0.017 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHH---HhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhH
Q 015513 106 HLRISTLKKMEALAMENERNRKSLE---EAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDL 182 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~---~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~ 182 (405)
+.+.-|+..||.+.++...+-..+- ....+..++..+. .++..+-.++..|.|+-.+. -.++.+...- ..
T Consensus 559 ~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-----~~~an~ll~vR~L~N~f~~~-~g~~~~~s~~-~~ 631 (745)
T KOG0301|consen 559 EMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-----ADPANQLLVVRCLANLFSNP-AGRELFMSRL-ES 631 (745)
T ss_pred HHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-----cchhHHHHHHHHHHHhccCH-HHHHHHHHHH-HH
Confidence 5566788888888876544432222 1234444444443 12234677889999998773 4455554321 11
Q ss_pred HHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhh--hccchhhhcccHHHHHHHHHHHhh----cCChHHHHHHHHHHHHh
Q 015513 183 IGALMWVLQWENNDRHVAVKTSAMIVLKMVLEL--ASKGLLESTLNLDFFKEMVKLLKE----NISQQATKSGLHVLLQA 256 (405)
Q Consensus 183 i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~--~~~~~~i~~~~~g~i~~Lv~lL~~----~~~~~~~~~a~~aL~~L 256 (405)
+...+--.++ +.+...+..-+....|++.. ..+. +.|+.+.|...+.. -.+.++.-..+.||.+|
T Consensus 632 i~~~~~~~~s---~~~knl~ia~atlaln~sv~l~~~~~------~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL 702 (745)
T KOG0301|consen 632 ILDPVIEASS---LSNKNLQIALATLALNYSVLLIQDNE------QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTL 702 (745)
T ss_pred Hhhhhhhhhc---ccchhHHHHHHHHHHHHHHHHHhccc------ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 2112222222 13344544444445555422 1111 12444444444433 22445666778888999
Q ss_pred ccCCchhHHHHhhcchHHHHHHhhcC
Q 015513 257 CPMGGNRVKITEANAVFELIELELTK 282 (405)
Q Consensus 257 ~~~~~n~~~~v~~g~v~~Lv~lL~~~ 282 (405)
+..+.+..++.+.--|..+++-+++.
T Consensus 703 ~t~~~~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 703 MTVDASVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred ccccHHHHHHHHhcCHHHHHHHHHHh
Confidence 99988999988877788888888764
No 347
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=61.44 E-value=8.4 Score=42.53 Aligned_cols=41 Identities=29% Similarity=0.701 Sum_probs=29.7
Q ss_pred CCCCcccCcCCc--ccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 015513 5 EVPQYFICPISL--QIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRD 58 (405)
Q Consensus 5 ~~~~~~~Cpi~~--~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~ 58 (405)
++|.++.||-|+ +.+.|+-+ .+| |+- ....||.|+.++..+
T Consensus 910 PL~PHY~Cp~Cky~Ef~~d~sv-gsG--fDL----------pdK~CPkCg~pl~kD 952 (1444)
T COG2176 910 PLPPHYLCPECKYSEFIDDGSV-GSG--FDL----------PDKDCPKCGTPLKKD 952 (1444)
T ss_pred CCCccccCCCCceeeeecCCCc-CCC--CCC----------CCCCCCcCCCccccC
Confidence 579999999998 67777743 334 421 256899999998653
No 348
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=60.38 E-value=4.2 Score=27.12 Aligned_cols=13 Identities=23% Similarity=0.887 Sum_probs=11.0
Q ss_pred CCCCcccCcCCcc
Q 015513 5 EVPQYFICPISLQ 17 (405)
Q Consensus 5 ~~~~~~~Cpi~~~ 17 (405)
++|+++.||+|+.
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 4799999999974
No 349
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.29 E-value=2.4e+02 Score=31.76 Aligned_cols=108 Identities=14% Similarity=0.177 Sum_probs=64.0
Q ss_pred HHHHHHhhcCCCCCcHHHHHHHHHHHhcC----HhhHHHH--HhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCC
Q 015513 273 FELIELELTKPEKSTTELIFNLLAQLCSC----ADGRLKF--REHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSAT 346 (405)
Q Consensus 273 ~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~----~~~~~~i--~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~ 346 (405)
-.|+++|... +-.++...+.+++++... .+..... +. +..+..|.+.+...+.-++..+..+...|+....-
T Consensus 315 ~~lv~lld~e-s~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r-~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~ 392 (1251)
T KOG0414|consen 315 TLLVDLLDSE-SYTLRNAVLEICANLVASELRDEELEEMSKSLR-DELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSI 392 (1251)
T ss_pred HHHHHhcCCc-hHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHH-HHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCC
Confidence 3456666553 556777888888887642 2211111 11 12456666666666778888888888888876543
Q ss_pred H-HHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 347 Y-EVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 347 ~-~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
. ..+.++++ +++.. ++ +.+.-+|++|..++..+...
T Consensus 393 p~~~~~eV~~-la~gr----l~-DkSslVRk~Ai~Ll~~~L~~ 429 (1251)
T KOG0414|consen 393 PLGSRTEVLE-LAIGR----LE-DKSSLVRKNAIQLLSSLLDR 429 (1251)
T ss_pred CccHHHHHHH-HHhcc----cc-cccHHHHHHHHHHHHHHHhc
Confidence 2 12223222 22222 23 55778899999888866654
No 350
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=60.22 E-value=3.1 Score=27.12 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=22.7
Q ss_pred CCCcccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 19 MKDPVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 19 m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
|.+--++ ...|-.|..|+...+.. ...||+|+++++.
T Consensus 10 f~~k~Li~C~dHYLCl~CLt~ml~~--s~~C~iC~~~LPt 47 (50)
T PF03854_consen 10 FANKGLIKCSDHYLCLNCLTLMLSR--SDRCPICGKPLPT 47 (50)
T ss_dssp S--SSEEE-SS-EEEHHHHHHT-SS--SSEETTTTEE---
T ss_pred hcCCCeeeecchhHHHHHHHHHhcc--ccCCCcccCcCcc
Confidence 3443344 45699999999999865 5789999999853
No 351
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=60.14 E-value=1.7e+02 Score=31.38 Aligned_cols=156 Identities=9% Similarity=0.037 Sum_probs=91.1
Q ss_pred HHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhc---------------
Q 015513 160 ILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLEST--------------- 224 (405)
Q Consensus 160 ~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~--------------- 224 (405)
+|.++..+.++..+.+.+.+ ++..+...+... ...+.+..+...+.+++...+.......
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~--g~~~~~~~l~~f---~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 568 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNG--GMKLLFKCLESF---DNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNK 568 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcc--cHHHHHHHHhhc---cchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhh
Confidence 56677777777667777777 899999999863 5678899999999999987755443220
Q ss_pred -----ccHHHHHHHHHHHhhc---CChHHHHHHHHHHHHhcc-CCchhHHHHhhcchHH-HHHHhhcCCCCCcHHHHHHH
Q 015513 225 -----LNLDFFKEMVKLLKEN---ISQQATKSGLHVLLQACP-MGGNRVKITEANAVFE-LIELELTKPEKSTTELIFNL 294 (405)
Q Consensus 225 -----~~~g~i~~Lv~lL~~~---~~~~~~~~a~~aL~~L~~-~~~n~~~~v~~g~v~~-Lv~lL~~~~~~~~~e~a~~~ 294 (405)
...-+...|..++.++ .....+..+...+..... .......+.....+.+ +..++.........--|+++
T Consensus 569 w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~t 648 (699)
T KOG3665|consen 569 WDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWT 648 (699)
T ss_pred cchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHH
Confidence 0111233333333331 112223333333333222 2222333333444555 66666654456677888899
Q ss_pred HHHHhcCHhhHHHHHhcccchHHHHH
Q 015513 295 LAQLCSCADGRLKFREHAGAIAMVTK 320 (405)
Q Consensus 295 L~~L~~~~~~~~~i~~~~g~i~~Lv~ 320 (405)
+.++........+.+...|+++.+.+
T Consensus 649 i~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (699)
T KOG3665|consen 649 IKNVLEQNKEYCKLVRESNGFELIEN 674 (699)
T ss_pred HHHHHHcChhhhhhhHhccchhhhhh
Confidence 99988654334444455677777776
No 352
>PLN02400 cellulose synthase
Probab=59.54 E-value=4.6 Score=44.21 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=33.5
Q ss_pred cCcCCccc-----CCCcccc--CCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 11 ICPISLQI-----MKDPVTA--ITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 11 ~Cpi~~~~-----m~dPv~~--~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
+|.||++- .-+|.+. .||--.||.|.| +-.+.|+..||.|+..+.
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE-YERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCYE-YERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchhh-eecccCCccCcccCCccc
Confidence 89999964 3446665 488889999985 433346789999998765
No 353
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=58.51 E-value=8.3 Score=37.20 Aligned_cols=34 Identities=21% Similarity=0.467 Sum_probs=23.7
Q ss_pred ccCCCCcccH-----HHHHHHHhcCC-----------CCCCCCCCCCCCC
Q 015513 24 TAITGISYDR-----ESIEKWLKTAK-----------DTTCPVTKQPLPR 57 (405)
Q Consensus 24 ~~~~g~~~~r-----~~I~~~~~~~~-----------~~~cP~~~~~~~~ 57 (405)
.-+|+.-||| +|+.+||...+ .-.||.||.++.-
T Consensus 303 ~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 303 EPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred CCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 3356677755 89999986321 3459999998764
No 354
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=58.02 E-value=9.4 Score=40.06 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=10.2
Q ss_pred cCcCCcccCCCccccCCCCcccHHH
Q 015513 11 ICPISLQIMKDPVTAITGISYDRES 35 (405)
Q Consensus 11 ~Cpi~~~~m~dPv~~~~g~~~~r~~ 35 (405)
.||-|+.. .+.|+.||..|
T Consensus 3 ~Cp~Cg~~------n~~~akFC~~C 21 (645)
T PRK14559 3 ICPQCQFE------NPNNNRFCQKC 21 (645)
T ss_pred cCCCCCCc------CCCCCcccccc
Confidence 46666653 34455555555
No 355
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=57.47 E-value=1.2e+02 Score=25.68 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHh-cCHhhH
Q 015513 227 LDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLC-SCADGR 305 (405)
Q Consensus 227 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~-~~~~~~ 305 (405)
...++.|.++|+++.+...|..++++|..|-.-+..+.+.++.+.= .................. .... ...|..
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~----~~~~~~~~~~~~~~~l~~-~~~~~~~ee~y 83 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD----SKSSENSNDESTDISLPM-MGISPSSEEYY 83 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC----ccccccccccchhhHHhh-ccCCCchHHHH
Confidence 4567889999998778999999999999998877766664432211 000000011222221111 1111 122222
Q ss_pred HHHHhcccchHHHHHHHHccC-hhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHH
Q 015513 306 LKFREHAGAIAMVTKRLLRVS-PATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEIL 382 (405)
Q Consensus 306 ~~i~~~~g~i~~Lv~~l~~~s-~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll 382 (405)
.. -.+..|++.+...+ .......+.++..+.+..+.. +...+- -.++.++..++ .+++..++.--.-|
T Consensus 84 ~~-----vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~-cv~~L~--~viP~~l~~i~-~~~~~~~e~~~~qL 152 (160)
T PF11865_consen 84 PT-----VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLK-CVPYLP--QVIPIFLRVIR-TCPDSLREFYFQQL 152 (160)
T ss_pred HH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcC-chhHHH--HHhHHHHHHHH-hCCHHHHHHHHHHH
Confidence 22 25677777443332 233345667766666543322 333322 37888999998 45667777644333
No 356
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=57.20 E-value=1.9e+02 Score=28.05 Aligned_cols=93 Identities=14% Similarity=0.050 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHH-HHHhccCCc
Q 015513 183 IGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHV-LLQACPMGG 261 (405)
Q Consensus 183 i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a-L~~L~~~~~ 261 (405)
+..++.=+.+ +.+...|..++.-|..-+.+.+.+..+. .+|....+++.+....+.....-++.+ ++-++....
T Consensus 23 v~ylld~l~~---~~~~s~Rr~sll~La~K~~~~~Fr~~~r--a~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~ 97 (361)
T PF07814_consen 23 VEYLLDGLES---SSSSSVRRSSLLELASKCADPQFRRQFR--AHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL 97 (361)
T ss_pred HHHHHhhccc---CCCccHHHHHHHHHHHHhCCHHHHHHHH--HcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc
Confidence 4444444553 2566777777777777777777777776 789999999999654233344444444 444555555
Q ss_pred hhHHHHhhcchHHHHHHhh
Q 015513 262 NRVKITEANAVFELIELEL 280 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~ 280 (405)
+-..+-+.+....++.++.
T Consensus 98 ~~~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 98 NMHLLLDRDSLRLLLKLLK 116 (361)
T ss_pred chhhhhchhHHHHHHHHhc
Confidence 5555556677777788887
No 357
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=57.19 E-value=6.6 Score=32.01 Aligned_cols=43 Identities=14% Similarity=0.379 Sum_probs=31.0
Q ss_pred cccCcCCcccCCC--ccc-cCCCCc------ccHHHHHHHHhcCCCCCCCCCCC
Q 015513 9 YFICPISLQIMKD--PVT-AITGIS------YDRESIEKWLKTAKDTTCPVTKQ 53 (405)
Q Consensus 9 ~~~Cpi~~~~m~d--Pv~-~~~g~~------~~r~~I~~~~~~~~~~~cP~~~~ 53 (405)
.+-|.||.+...+ =|+ ++||-+ ||..|+++|-.+ ....|.=|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~--~~rDPfnR~ 77 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE--RNRDPFNRN 77 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh--ccCCCcccc
Confidence 4679999988887 443 366644 999999999643 456777544
No 358
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=57.03 E-value=2.2e+02 Score=28.63 Aligned_cols=189 Identities=15% Similarity=0.133 Sum_probs=102.3
Q ss_pred HHHHHHHHHhhccCCCchhHHHHHHHHHhc-CCCchhh-HHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHH
Q 015513 135 VRALVLFIITSYKGNKTTGLEEALRILSLV-WSPSNEN-KALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMV 212 (405)
Q Consensus 135 v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L-~~~~~~~-~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L 212 (405)
++.+..+|..-..+...+.++.|+.-|..+ +.+.... -+... ..+..++++|+.+ .+...+..|.++|..+
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~----~iL~~l~EvL~d~---~~~~~k~laLrvL~~m 357 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA----EILLLLLEVLSDS---EDEIIKKLALRVLREM 357 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH----HHHHHHHHHHccc---hhhHHHHHHHHHHHHH
Confidence 334444554332222234577787744444 3332211 12221 1566677888752 6778899999999999
Q ss_pred HhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHH-HHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHH
Q 015513 213 LELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGL-HVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELI 291 (405)
Q Consensus 213 ~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~-~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a 291 (405)
+.....+-.-. ..-+|..+++.-++. ..++...|. .++.-+++...-+...+ +..++... |....-.+
T Consensus 358 l~~Q~~~l~Ds--tE~ai~K~Leaa~ds-~~~v~~~Aeed~~~~las~~P~~~I~~-------i~~~Ilt~-D~~~~~~~ 426 (516)
T KOG2956|consen 358 LTNQPARLFDS--TEIAICKVLEAAKDS-QDEVMRVAEEDCLTTLASHLPLQCIVN-------ISPLILTA-DEPRAVAV 426 (516)
T ss_pred HHhchHhhhch--HHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHhhCchhHHHH-------HhhHHhcC-cchHHHHH
Confidence 87654433222 233455555555555 445555555 44566677665443321 22223222 43333344
Q ss_pred HHHHHHHhc--CHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhccc
Q 015513 292 FNLLAQLCS--CADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKF 343 (405)
Q Consensus 292 ~~~L~~L~~--~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~ 343 (405)
+..+..|+. ..|.-.-++. ...|.+++.--..+..++..++-+|.++.+.
T Consensus 427 iKm~Tkl~e~l~~EeL~~ll~--diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 427 IKMLTKLFERLSAEELLNLLP--DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred HHHHHHHHhhcCHHHHHHhhh--hhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 445555553 2333333333 3678888855555678888888888877654
No 359
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=57.01 E-value=43 Score=25.47 Aligned_cols=68 Identities=13% Similarity=0.052 Sum_probs=48.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc
Q 015513 230 FKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS 300 (405)
Q Consensus 230 i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~ 300 (405)
+...+..|.++ .+.+|..++..|..|..... ....--.+++..+...|.+. |.-+--+|...|..|+.
T Consensus 5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHH
Confidence 34455666676 67899999999999987655 22222246777777777774 77788889999998875
No 360
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=56.45 E-value=4.8 Score=26.48 Aligned_cols=13 Identities=23% Similarity=0.887 Sum_probs=8.2
Q ss_pred CCCCcccCcCCcc
Q 015513 5 EVPQYFICPISLQ 17 (405)
Q Consensus 5 ~~~~~~~Cpi~~~ 17 (405)
++|+++.||+|+-
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 4799999999974
No 361
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.20 E-value=2.9e+02 Score=29.72 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=49.1
Q ss_pred hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHH
Q 015513 132 AFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKM 211 (405)
Q Consensus 132 ~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~ 211 (405)
..+...+..+|.+....-..-+.-+|+.++.+|.... -+.+. + ++..|--++++ .....|-.|.++|..
T Consensus 240 ~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~---~r~l~--p--avs~Lq~flss----p~~~lRfaAvRtLnk 308 (865)
T KOG1078|consen 240 QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTN---SRELA--P--AVSVLQLFLSS----PKVALRFAAVRTLNK 308 (865)
T ss_pred ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccC---Hhhcc--h--HHHHHHHHhcC----cHHHHHHHHHHHHHH
Confidence 4555666677665543221123667878888776432 22332 2 56666677777 788899999999999
Q ss_pred HHhhhccc
Q 015513 212 VLELASKG 219 (405)
Q Consensus 212 L~~~~~~~ 219 (405)
++.....+
T Consensus 309 vAm~~P~~ 316 (865)
T KOG1078|consen 309 VAMKHPQA 316 (865)
T ss_pred HHHhCCcc
Confidence 98765443
No 362
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=55.81 E-value=1.6e+02 Score=26.63 Aligned_cols=126 Identities=13% Similarity=0.135 Sum_probs=75.6
Q ss_pred chhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHH
Q 015513 151 TTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFF 230 (405)
Q Consensus 151 ~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i 230 (405)
++.+...+..|..++.++..+.. - ++..+..+... +..+.+.-+.+.+..+-..++ .. -+.+
T Consensus 15 ~~~~~~~L~~L~~l~~~~~~~~~-----~--v~~~L~~L~~~----~~~~~~~~~~rLl~~lw~~~~---r~----f~~L 76 (234)
T PF12530_consen 15 PELQLPLLEALPSLACHKNVCVP-----P--VLQTLVSLVEQ----GSLELRYVALRLLTLLWKAND---RH----FPFL 76 (234)
T ss_pred hHHHHHHHHHHHHHhccCccchh-----H--HHHHHHHHHcC----CchhHHHHHHHHHHHHHHhCc---hH----HHHH
Confidence 34567777888888766511111 1 44555555554 555555566666666654332 11 1556
Q ss_pred HHHHHHH--h------hc-CChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHh-hcCCCCCcHHHHHHHHHHHh
Q 015513 231 KEMVKLL--K------EN-ISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELE-LTKPEKSTTELIFNLLAQLC 299 (405)
Q Consensus 231 ~~Lv~lL--~------~~-~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL-~~~~~~~~~e~a~~~L~~L~ 299 (405)
..++..+ + ++ ...+..-..+.++..+|...++ --...++.+-..| .+. ++.++..++..|..||
T Consensus 77 ~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~-~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 77 QPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSC-DEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHH
Confidence 6555551 1 11 2334445556788899986666 2234778888888 454 6778889999999998
No 363
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=55.72 E-value=52 Score=31.53 Aligned_cols=79 Identities=10% Similarity=0.100 Sum_probs=51.1
Q ss_pred HhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhc--CChHHHHHHHHHHHHhccCCchhHHHHh-------hc
Q 015513 200 AVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKEN--ISQQATKSGLHVLLQACPMGGNRVKITE-------AN 270 (405)
Q Consensus 200 ~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~--~~~~~~~~a~~aL~~L~~~~~n~~~~v~-------~g 270 (405)
.+|-.|+..|.++..+......+...+.+++..|+++++.+ .....+..|+.+|..++....-...++. .|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 34455666666665444444444424566999999999864 4568899999999999985543333332 46
Q ss_pred chHHHHHH
Q 015513 271 AVFELIEL 278 (405)
Q Consensus 271 ~v~~Lv~l 278 (405)
+++.+++-
T Consensus 317 iL~~llR~ 324 (329)
T PF06012_consen 317 ILPQLLRK 324 (329)
T ss_pred cHHHHHHH
Confidence 66666654
No 364
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=55.66 E-value=2.6e+02 Score=29.00 Aligned_cols=141 Identities=13% Similarity=0.097 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhh-hccchhhhcccHHHHHHHHHHHhhc---CChHHHHHHHHHHHHh-
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLEL-ASKGLLESTLNLDFFKEMVKLLKEN---ISQQATKSGLHVLLQA- 256 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~-~~~~~~i~~~~~g~i~~Lv~lL~~~---~~~~~~~~a~~aL~~L- 256 (405)
++..+...+.+ +.... ..|+.++..+... .. -+...+..+..|++++ .++..+..|.-++..|
T Consensus 358 a~~~i~~~i~~----~~~~~-~ea~~~~~~~~~~~~~-------Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv 425 (574)
T smart00638 358 ALKFIKQWIKN----KKITP-LEAAQLLAVLPHTARY-------PTEEILKALFELAESPEVQKQPYLRESALLAYGSLV 425 (574)
T ss_pred HHHHHHHHHHc----CCCCH-HHHHHHHHHHHHhhhc-------CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHH
Confidence 66667777776 33332 2344444443322 11 1345667778888753 2445566666665555
Q ss_pred ---ccCCchhHHHHhhcchHHHHHHhhcC---CCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHcc---Ch
Q 015513 257 ---CPMGGNRVKITEANAVFELIELELTK---PEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRV---SP 327 (405)
Q Consensus 257 ---~~~~~n~~~~v~~g~v~~Lv~lL~~~---~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~---s~ 327 (405)
|.+.+.....+-...++.|.+.|... .+...+-..+.+|+|+. +...+..|...+... +.
T Consensus 426 ~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g-----------~~~~i~~l~~~l~~~~~~~~ 494 (574)
T smart00638 426 RRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG-----------HPSSIKVLEPYLEGAEPLST 494 (574)
T ss_pred HHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC-----------ChhHHHHHHHhcCCCCCCCH
Confidence 43333322223344778888877542 13333456777777762 222344444433211 22
Q ss_pred hhhHHHHHHHHHhcccCC
Q 015513 328 ATNDRAVHILSSISKFSA 345 (405)
Q Consensus 328 ~~~e~a~~~L~~L~~~~~ 345 (405)
..+-.|+.+|..++...+
T Consensus 495 ~iR~~Av~Alr~~a~~~p 512 (574)
T smart00638 495 FIRLAAILALRNLAKRDP 512 (574)
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 345556666666654333
No 365
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=55.25 E-value=12 Score=25.34 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=20.7
Q ss_pred CCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 28 GISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 28 g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
-.|||..|-+..+ +..||.|+-.|..
T Consensus 28 ECTFC~~C~e~~l----~~~CPNCgGelv~ 53 (57)
T PF06906_consen 28 ECTFCADCAETML----NGVCPNCGGELVR 53 (57)
T ss_pred eCcccHHHHHHHh----cCcCcCCCCcccc
Confidence 3589999999887 2489999987753
No 366
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=55.11 E-value=3.5e+02 Score=31.52 Aligned_cols=129 Identities=13% Similarity=0.142 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCch--hHHHHhhcchHHHHHHh
Q 015513 202 KTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGN--RVKITEANAVFELIELE 279 (405)
Q Consensus 202 ~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n--~~~~v~~g~v~~Lv~lL 279 (405)
..+|.++...|+...+... .-.+.+..++..|.++ ....|..|+++|..+..-+.. ....|+.|+. .-+
T Consensus 794 ~~~a~li~~~la~~r~f~~----sfD~yLk~Il~~l~e~-~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R~ 864 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQ----SFDPYLKLILSVLGEN-AIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GRL 864 (1692)
T ss_pred chhHHHHHHHHHhhhHHHH----hhHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----Hhh
Confidence 3566666666665544322 1236778888888876 788999999999999886652 2233444433 333
Q ss_pred hcCCCCCcHHHHHHHHHHHhc-CHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCC
Q 015513 280 LTKPEKSTTELIFNLLAQLCS-CADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSAT 346 (405)
Q Consensus 280 ~~~~~~~~~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~ 346 (405)
.+ +...++|.|+..++.-.. .++--.+.. ..+.+.++..+-.++.+++.++.-+|...++
T Consensus 865 ~D-ssasVREAaldLvGrfvl~~~e~~~qyY------~~i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 865 ND-SSASVREAALDLVGRFVLSIPELIFQYY------DQIIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred cc-chhHHHHHHHHHHhhhhhccHHHHHHHH------HHHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 33 267889999999986443 343333332 2334445555667788888888888876664
No 367
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=54.82 E-value=1.2e+02 Score=32.14 Aligned_cols=75 Identities=7% Similarity=0.002 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhH
Q 015513 226 NLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGR 305 (405)
Q Consensus 226 ~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~ 305 (405)
..++|..|...--+..+.+++++|.-+|.-++..+.+ ..|..|++|.+.-+..++--++.+|..-|.....+
T Consensus 552 nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~ 623 (929)
T KOG2062|consen 552 NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK 623 (929)
T ss_pred chhhHHHhhcccccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH
Confidence 3466777777743434889999999999888775433 34666777776435678888899999888877777
Q ss_pred HHH
Q 015513 306 LKF 308 (405)
Q Consensus 306 ~~i 308 (405)
.++
T Consensus 624 eAi 626 (929)
T KOG2062|consen 624 EAI 626 (929)
T ss_pred HHH
Confidence 765
No 368
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=54.67 E-value=3.4 Score=22.12 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=9.9
Q ss_pred ccCcCCcccCCCcc
Q 015513 10 FICPISLQIMKDPV 23 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv 23 (405)
|.||+|+..|.++-
T Consensus 1 y~C~~C~~~f~~~~ 14 (23)
T PF00096_consen 1 YKCPICGKSFSSKS 14 (23)
T ss_dssp EEETTTTEEESSHH
T ss_pred CCCCCCCCccCCHH
Confidence 56788877777654
No 369
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=54.66 E-value=7.6 Score=27.26 Aligned_cols=12 Identities=25% Similarity=0.850 Sum_probs=8.9
Q ss_pred ccHHHHHHHHhc
Q 015513 31 YDRESIEKWLKT 42 (405)
Q Consensus 31 ~~r~~I~~~~~~ 42 (405)
|||.|+.+|...
T Consensus 12 FCRNCLskWy~~ 23 (68)
T PF06844_consen 12 FCRNCLSKWYRE 23 (68)
T ss_dssp --HHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 370
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=54.31 E-value=66 Score=24.46 Aligned_cols=84 Identities=11% Similarity=0.064 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCch
Q 015513 183 IGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGN 262 (405)
Q Consensus 183 i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n 262 (405)
....+..|.+ ..+.+|.++...|..|....+ ...+ ...+++..+...|++. ++-+--+|.+.|..|+...+.
T Consensus 5 ~~~al~~L~d----p~~PvRa~gL~~L~~Li~~~~-~~~~--~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLND----PLPPVRAHGLVLLRKLIESKS-EPVI--DIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccC----CCcchHHHHHHHHHHHHHcCC-cchh--hHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH
Confidence 4444555665 778899999999999987665 1222 2356777788888887 778888888888888864432
Q ss_pred hHHHHhhcchHHHHHHhhc
Q 015513 263 RVKITEANAVFELIELELT 281 (405)
Q Consensus 263 ~~~~v~~g~v~~Lv~lL~~ 281 (405)
.++|.|++...+
T Consensus 77 -------~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 -------EVLPILLDEYAD 88 (92)
T ss_pred -------HHHHHHHHHHhC
Confidence 245555555443
No 371
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.97 E-value=3e+02 Score=29.32 Aligned_cols=247 Identities=11% Similarity=0.096 Sum_probs=135.9
Q ss_pred HHHHhcc--hhHHHHHHHHHHHHHH-hhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHh
Q 015513 98 LVRDLDS--GHLRISTLKKMEALAM-ENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKAL 174 (405)
Q Consensus 98 lv~~l~~--~~~~~~Al~~L~~l~~-~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~ 174 (405)
++..|++ +=.+.+|+-.|..+.- -.+.-| -.+|.|+.-|. +.++.++..|+.++++|+.-++. ..
T Consensus 149 v~tLL~sskpYvRKkAIl~lykvFLkYPeAlr------~~FprL~EkLe----DpDp~V~SAAV~VICELArKnPk--ny 216 (877)
T KOG1059|consen 149 VFTLLNSSKPYVRKKAILLLYKVFLKYPEALR------PCFPRLVEKLE----DPDPSVVSAAVSVICELARKNPQ--NY 216 (877)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh------hhHHHHHHhcc----CCCchHHHHHHHHHHHHHhhCCc--cc
Confidence 3444443 3566677766654332 222222 23455555554 44456699999999999987654 44
Q ss_pred hcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 015513 175 VDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLL 254 (405)
Q Consensus 175 i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~ 254 (405)
+- .-|.+..+|..+ .|.=....-+.+..+|+--+ ...+ ...+++|.+++.+..-....=.+..++-
T Consensus 217 L~-----LAP~ffkllttS---sNNWmLIKiiKLF~aLtplE---PRLg---KKLieplt~li~sT~AmSLlYECvNTVV 282 (877)
T KOG1059|consen 217 LQ-----LAPLFYKLLVTS---SNNWVLIKLLKLFAALTPLE---PRLG---KKLIEPITELMESTVAMSLLYECVNTVV 282 (877)
T ss_pred cc-----ccHHHHHHHhcc---CCCeehHHHHHHHhhccccC---chhh---hhhhhHHHHHHHhhHHHHHHHHHHHHhe
Confidence 42 445677777653 23333444455555554322 2333 3688999999886411111111111111
Q ss_pred --HhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc-CHhhHHHHHhcccchHHHHHHHHccChhhhH
Q 015513 255 --QACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS-CADGRLKFREHAGAIAMVTKRLLRVSPATND 331 (405)
Q Consensus 255 --~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e 331 (405)
+++....+....+.. +|.-|-.++.+. |..++-.++-+++.+.. ++..-.+ + -..+++.|.......+-
T Consensus 283 a~s~s~g~~d~~asiqL-CvqKLr~fieds-DqNLKYlgLlam~KI~ktHp~~Vqa---~---kdlIlrcL~DkD~SIRl 354 (877)
T KOG1059|consen 283 AVSMSSGMSDHSASIQL-CVQKLRIFIEDS-DQNLKYLGLLAMSKILKTHPKAVQA---H---KDLILRCLDDKDESIRL 354 (877)
T ss_pred eehhccCCCCcHHHHHH-HHHHHhhhhhcC-CccHHHHHHHHHHHHhhhCHHHHHH---h---HHHHHHHhccCCchhHH
Confidence 344443344444443 566666677664 88999988888888874 2322221 1 23344434344556777
Q ss_pred HHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHH-hccCcHHHHHHHHHHHHHhhc
Q 015513 332 RAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVT-QADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 332 ~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll-~~~~~~~~k~~A~~ll~~l~~ 387 (405)
.|+..|+.+.+. .+..+++ ..|+.-+ .++++.---+..-.++.+++.
T Consensus 355 rALdLl~gmVsk----kNl~eIV-----k~LM~~~~~ae~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 355 RALDLLYGMVSK----KNLMEIV-----KTLMKHVEKAEGTNYRDELLTRIISICSQ 402 (877)
T ss_pred HHHHHHHHHhhh----hhHHHHH-----HHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence 888888887753 3555543 4455444 444444334556667777766
No 372
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=53.88 E-value=2.3e+02 Score=28.00 Aligned_cols=152 Identities=14% Similarity=0.073 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHH--HhchHHHHHHHHHhhccCC---CchhHHHHHHHHHhcCCCchhhHHhhcccch
Q 015513 106 HLRISTLKKMEALAMENERNRKSLE--EAFVVRALVLFIITSYKGN---KTTGLEEALRILSLVWSPSNENKALVDHHNQ 180 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~--~~g~v~~Lv~lL~~~~~~~---~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~ 180 (405)
.-+...|.+++.++++...-..... ....+-.+..+=.+..... +..+.-+|+..|+|+..++...+....+..
T Consensus 61 t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~- 139 (532)
T KOG4464|consen 61 THRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHSQRAQDLFLENP- 139 (532)
T ss_pred hhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhccHHHHHHHHhhh-
Confidence 4556777888888765322110000 0122222222211111111 125678999999999988888887777665
Q ss_pred hHHHHHHHHHhhhc-CCCcHHhHHHHHHHHHHHHhhh-ccchhhhcccHHHHHHHHHHHhhc--CC---------hHH--
Q 015513 181 DLIGALMWVLQWEN-NDRHVAVKTSAMIVLKMVLELA-SKGLLESTLNLDFFKEMVKLLKEN--IS---------QQA-- 245 (405)
Q Consensus 181 ~~i~~Lv~lL~~~~-~~~~~~~~~~A~~~L~~L~~~~-~~~~~i~~~~~g~i~~Lv~lL~~~--~~---------~~~-- 245 (405)
....+...+.... +.-...++..=.++|+-|..-. +.+.... .+.+|++-+-+.|.+. .+ ++-
T Consensus 140 -~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~-~~l~Gl~~lt~~led~lgidse~n~~~l~pqe~n 217 (532)
T KOG4464|consen 140 -LTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLI-AELLGLELLTNWLEDKLGIDSEINVPPLNPQETN 217 (532)
T ss_pred -hHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHH-HHhcccHHHHHHhhccccCCCCcCCCCCCHHHHH
Confidence 4444444333211 0022334555666777665433 3444444 5678888888888653 11 122
Q ss_pred -HHHHHHHHHHhccCC
Q 015513 246 -TKSGLHVLLQACPMG 260 (405)
Q Consensus 246 -~~~a~~aL~~L~~~~ 260 (405)
.-.++++++|+....
T Consensus 218 ~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 218 RACEALKVFFNVTCDS 233 (532)
T ss_pred HHHHHHHHHhheeecc
Confidence 335667778877643
No 373
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=51.94 E-value=2e+02 Score=26.60 Aligned_cols=213 Identities=14% Similarity=0.124 Sum_probs=117.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHH
Q 015513 105 GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIG 184 (405)
Q Consensus 105 ~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~ 184 (405)
+..|.+|+..|..+...-+... ....-|..|+.+..+...+. .....++..|..|.....-...... ..+.
T Consensus 13 ~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~--~~~~~~l~gl~~L~~~~~~~~~~~~----~i~~ 83 (262)
T PF14500_consen 13 PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDH--ACVQPALKGLLALVKMKNFSPESAV----KILR 83 (262)
T ss_pred HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccH--hhHHHHHHHHHHHHhCcCCChhhHH----HHHH
Confidence 4777888888877766544322 33445788888887765443 2244556555555432210000100 0222
Q ss_pred HHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhH
Q 015513 185 ALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRV 264 (405)
Q Consensus 185 ~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~ 264 (405)
.+..-..-. .-....|...-.+|..|.........- ...+++..+++++....||+-...+...+..+...-+.
T Consensus 84 ~l~~~~~~q--~~~q~~R~~~~~ll~~l~~~~~~~l~~--~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-- 157 (262)
T PF14500_consen 84 SLFQNVDVQ--SLPQSTRYAVYQLLDSLLENHREALQS--MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-- 157 (262)
T ss_pred HHHHhCChh--hhhHHHHHHHHHHHHHHHHHhHHHHHh--chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--
Confidence 222211110 033456677777788776554322222 24578999999998877999999999998888765442
Q ss_pred HHHhhcchHHHHHHhhc--------C-CCC-C-cHHHHHHHHHH-HhcCHhhHHHHHhcccchHHHHHHHHccChhhhHH
Q 015513 265 KITEANAVFELIELELT--------K-PEK-S-TTELIFNLLAQ-LCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDR 332 (405)
Q Consensus 265 ~~v~~g~v~~Lv~lL~~--------~-~~~-~-~~e~a~~~L~~-L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~ 332 (405)
...+.-+.+.+.. . +++ . .++.-...|.+ |+.++ .+. .-++|.|++.|...+...+..
T Consensus 158 ----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~----~fa--~~~~p~LleKL~s~~~~~K~D 227 (262)
T PF14500_consen 158 ----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP----LFA--PFAFPLLLEKLDSTSPSVKLD 227 (262)
T ss_pred ----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH----hhH--HHHHHHHHHHHcCCCcHHHHH
Confidence 2223333343321 1 121 2 34444444433 33322 222 237899999887777777777
Q ss_pred HHHHHHHhcc
Q 015513 333 AVHILSSISK 342 (405)
Q Consensus 333 a~~~L~~L~~ 342 (405)
+..+|..-+.
T Consensus 228 ~L~tL~~c~~ 237 (262)
T PF14500_consen 228 SLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHH
Confidence 7777766443
No 374
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=51.54 E-value=3e+02 Score=28.53 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=51.0
Q ss_pred chHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHH
Q 015513 133 FVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMV 212 (405)
Q Consensus 133 g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L 212 (405)
.++..++.+..+. +..++..|+..|-.+|.++++ .+.+ ....|+.+|.+ .+.......-.+|..|
T Consensus 59 ~Ai~a~~DLcEDe----d~~iR~~aik~lp~~ck~~~~---~v~k----vaDvL~QlL~t----dd~~E~~~v~~sL~~l 123 (556)
T PF05918_consen 59 EAINAQLDLCEDE----DVQIRKQAIKGLPQLCKDNPE---HVSK----VADVLVQLLQT----DDPVELDAVKNSLMSL 123 (556)
T ss_dssp HHHHHHHHHHT-S----SHHHHHHHHHHGGGG--T--T----HHH----HHHHHHHHTT-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc----cHHHHHHHHHhHHHHHHhHHH---HHhH----HHHHHHHHHhc----ccHHHHHHHHHHHHHH
Confidence 4566667766532 234577888888888876543 2321 56667888887 5555555555555555
Q ss_pred HhhhccchhhhcccHHHHHHHHHHHh---hcCChHHHHHHHHHHHH
Q 015513 213 LELASKGLLESTLNLDFFKEMVKLLK---ENISQQATKSGLHVLLQ 255 (405)
Q Consensus 213 ~~~~~~~~~i~~~~~g~i~~Lv~lL~---~~~~~~~~~~a~~aL~~ 255 (405)
-..+. .+.+..|.+-+. ++ +..+++.++..|..
T Consensus 124 l~~d~---------k~tL~~lf~~i~~~~~~-de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 124 LKQDP---------KGTLTGLFSQIESSKSG-DEQVRERALKFLRE 159 (556)
T ss_dssp HHH-H---------HHHHHHHHHHHH---HS--HHHHHHHHHHHHH
T ss_pred HhcCc---------HHHHHHHHHHHHhcccC-chHHHHHHHHHHHH
Confidence 43321 234444555444 44 56677777776643
No 375
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=51.29 E-value=3.1e+02 Score=28.64 Aligned_cols=213 Identities=10% Similarity=0.041 Sum_probs=101.6
Q ss_pred HHHHHhc---hHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCc-hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhH
Q 015513 127 KSLEEAF---VVRALVLFIITSYKGNKTTGLEEALRILSLVWSPS-NENKALVDHHNQDLIGALMWVLQWENNDRHVAVK 202 (405)
Q Consensus 127 ~~i~~~g---~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~-~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~ 202 (405)
+.+..+| ++..+..++.+.... -.+|..+|..|.... .-.++ .+..+..++.+.....+...+
T Consensus 386 Dal~~aGT~~av~~i~~~I~~~~~~-----~~ea~~~l~~l~~~~~~Pt~e--------~l~~l~~L~~~~~~~~~~~l~ 452 (618)
T PF01347_consen 386 DALPQAGTNPAVKFIKDLIKSKKLT-----DDEAAQLLASLPFHVRRPTEE--------LLKELFELAKSPKVKNSPYLR 452 (618)
T ss_dssp HHHHHH-SHHHHHHHHHHHHTT-S------HHHHHHHHHHHHHT-----HH--------HHHHHHHHHT-HHHHT-HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHhhcCCCCHH--------HHHHHHHHHhCccccCChhHH
Confidence 3444444 455666677653211 244555555443221 11112 344444444421000355666
Q ss_pred HHHHHHHHHHHhhhccc----------hhhhcccHHHHHHHHHHHhh---cCChHHHHHHHHHHHHhccCCchhHHHHhh
Q 015513 203 TSAMIVLKMVLELASKG----------LLESTLNLDFFKEMVKLLKE---NISQQATKSGLHVLLQACPMGGNRVKITEA 269 (405)
Q Consensus 203 ~~A~~~L~~L~~~~~~~----------~~i~~~~~g~i~~Lv~lL~~---~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~ 269 (405)
..|+..+..|....-.. ... .....++.|...|.. ..+.+.+..+++||.|+-. .
T Consensus 453 ~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~ 520 (618)
T PF01347_consen 453 ETALLSLGSLVHKYCVNSDSAEFCDPCSRC--IIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------P 520 (618)
T ss_dssp HHHHHHHHHHHHHHHTT-----------SS----GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------G
T ss_pred HHHHHHHHHHhCceeecccccccccccchh--hHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------c
Confidence 77777777765322111 111 123556667776662 2366788899999998853 3
Q ss_pred cchHHHHHHhhcCC--CCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCH
Q 015513 270 NAVFELIELELTKP--EKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATY 347 (405)
Q Consensus 270 g~v~~Lv~lL~~~~--~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~ 347 (405)
..++.|...+.... +..++-.|+.+|..++.... .. ..+.|.. ++.......|.-+.|+..|-...++.
T Consensus 521 ~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~--~~------v~~~l~~-I~~n~~e~~EvRiaA~~~lm~~~P~~ 591 (618)
T PF01347_consen 521 ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP--EK------VREILLP-IFMNTTEDPEVRIAAYLILMRCNPSP 591 (618)
T ss_dssp GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H--HH------HHHHHHH-HHH-TTS-HHHHHHHHHHHHHT---H
T ss_pred hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc--HH------HHHHHHH-HhcCCCCChhHHHHHHHHHHhcCCCH
Confidence 46777777776541 33456667777766643211 11 2234445 32323344455555555555554542
Q ss_pred HHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHH
Q 015513 348 EVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEIL 382 (405)
Q Consensus 348 ~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll 382 (405)
..+..+...+..+.+..+.......|
T Consensus 592 ---------~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 592 ---------SVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp ---------HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 34556666777666666665555544
No 376
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=50.66 E-value=9.8 Score=33.42 Aligned_cols=45 Identities=18% Similarity=0.375 Sum_probs=34.8
Q ss_pred ccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
-.|.+|+.+.-.=+-- .||-.|-+.|+++++.+ ...||.|+.-.+
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~--~~~cphc~d~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR--RDICPHCGDLWT 227 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc--cCcCCchhcccC
Confidence 3799999876655433 58888999999999976 578999976543
No 377
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.78 E-value=98 Score=29.27 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
++...+..|.+ .+.+....+.-.|..|+........-. =...|-.+++=+++. ...+.++|..++..+.++-.
T Consensus 89 al~~~l~~L~s----~dW~~~vdgLn~irrLs~fh~e~l~~~--L~~vii~vvkslKNl-RS~VsraA~~t~~difs~ln 161 (334)
T KOG2933|consen 89 ALKQALKKLSS----DDWEDKVDGLNSIRRLSEFHPESLNPM--LHEVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLN 161 (334)
T ss_pred HHHHHHHHhch----HHHHHHhhhHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555 566666666666666665543211111 134566667777776 55788888888888877544
Q ss_pred hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcC
Q 015513 262 NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSC 301 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~ 301 (405)
+...-.-.+.+-.|+.--... ..-+++.|-.+|..+...
T Consensus 162 ~~i~~~ld~lv~~Ll~ka~~d-nrFvreda~kAL~aMV~~ 200 (334)
T KOG2933|consen 162 NSIDQELDDLVTQLLHKASQD-NRFVREDAEKALVAMVNH 200 (334)
T ss_pred HHHHHHHHHHHHHHHhhhccc-chHHHHHHHHHHHHHHhc
Confidence 433322223333222221111 334788888888887643
No 378
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=49.64 E-value=7.5 Score=32.45 Aligned_cols=24 Identities=21% Similarity=0.646 Sum_probs=16.9
Q ss_pred CCCCcccHHHHHHHHhc---------CCCCCCCCCCCC
Q 015513 26 ITGISYDRESIEKWLKT---------AKDTTCPVTKQP 54 (405)
Q Consensus 26 ~~g~~~~r~~I~~~~~~---------~~~~~cP~~~~~ 54 (405)
.+||+|+ -||.. .|..+||+|+..
T Consensus 9 ~~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~ 41 (148)
T PF06676_consen 9 ENGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGST 41 (148)
T ss_pred CCCCccc-----eecCCHHHHHHHHHcCCccCCCCCCC
Confidence 4789995 47642 246789999864
No 379
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=49.21 E-value=3.4e+02 Score=29.11 Aligned_cols=86 Identities=24% Similarity=0.238 Sum_probs=56.8
Q ss_pred CCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHH
Q 015513 196 DRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFEL 275 (405)
Q Consensus 196 ~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~L 275 (405)
+.+.++|..|+.+|.-++.. +...++..|.+|.+..++-+|--++.||.--|.+..++..+ ..+.+|
T Consensus 566 D~nDDVrRaAVialGFVl~~----------dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi---~lLepl 632 (929)
T KOG2062|consen 566 DVNDDVRRAAVIALGFVLFR----------DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI---NLLEPL 632 (929)
T ss_pred ccchHHHHHHHHHheeeEec----------ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH---HHHhhh
Confidence 35666666666666654332 34567888999998889999999999999989887777654 233333
Q ss_pred HHHhhcCCCCCcHHHHHHHHHHH
Q 015513 276 IELELTKPEKSTTELIFNLLAQL 298 (405)
Q Consensus 276 v~lL~~~~~~~~~e~a~~~L~~L 298 (405)
+. + +..-++.-|+-+++.+
T Consensus 633 ~~---D-~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 633 TS---D-PVDFVRQGALIALAMI 651 (929)
T ss_pred hc---C-hHHHHHHHHHHHHHHH
Confidence 32 2 2334566666666554
No 380
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=49.15 E-value=3e+02 Score=31.96 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=67.4
Q ss_pred HHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc-CCch
Q 015513 184 GALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP-MGGN 262 (405)
Q Consensus 184 ~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~-~~~n 262 (405)
..++..|.. .....|..|..+|..+...+.... ....+-...-.-+.+. +..+|++|+..+..... +++.
T Consensus 819 k~Il~~l~e----~~ialRtkAlKclS~ive~Dp~vL----~~~dvq~~Vh~R~~Ds-sasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 819 KLILSVLGE----NAIALRTKALKCLSMIVEADPSVL----SRPDVQEAVHGRLNDS-SASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred HHHHHHhcC----chHHHHHHHHHHHHHHHhcChHhh----cCHHHHHHHHHhhccc-hhHHHHHHHHHHhhhhhccHHH
Confidence 444555554 778899999999999977654321 1233333333334444 67899999999875443 3332
Q ss_pred hHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHH
Q 015513 263 RVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLK 307 (405)
Q Consensus 263 ~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~ 307 (405)
..+ ....+++-+.+. ...++.++..+|..+|....+..+
T Consensus 890 ~~q-----yY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~~ 928 (1692)
T KOG1020|consen 890 IFQ-----YYDQIIERILDT-GVSVRKRVIKILRDICEETPDFSK 928 (1692)
T ss_pred HHH-----HHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCChhh
Confidence 222 223344444443 578899999999999975544443
No 381
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.33 E-value=2.2e+02 Score=28.81 Aligned_cols=140 Identities=11% Similarity=0.046 Sum_probs=72.9
Q ss_pred ChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHH
Q 015513 242 SQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKR 321 (405)
Q Consensus 242 ~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~ 321 (405)
+...+..|++.|.|.++.-..+..-...-.+..++.-|.++.+.++.-.+...|..+.....++.- . .+-++.-+++
T Consensus 271 ~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l--~-~~~l~ialrl 347 (533)
T KOG2032|consen 271 SAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL--E-SYLLNIALRL 347 (533)
T ss_pred hhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch--h-hhchhHHHHH
Confidence 567888999999999986333322222335566666666654667777888888777654444332 1 2333333331
Q ss_pred ---HHccChhhhHHHHHHHHHhcccC---CCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 322 ---LLRVSPATNDRAVHILSSISKFS---ATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 322 ---l~~~s~~~~e~a~~~L~~L~~~~---~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
.....+..+-.|..+...|+... .+....+.+.. +. .+|+.-++ +..+..-.+....++.+-.
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k-~~-~~lllhl~-d~~p~va~ACr~~~~~c~p 416 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKK-RL-APLLLHLQ-DPNPYVARACRSELRTCYP 416 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHh-cc-ccceeeeC-CCChHHHHHHHHHHHhcCc
Confidence 11123444555555555554433 33333332222 33 34444444 4455544555555554433
No 382
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=47.45 E-value=9.7 Score=23.07 Aligned_cols=10 Identities=30% Similarity=0.909 Sum_probs=7.6
Q ss_pred CCCCCCCCCC
Q 015513 45 DTTCPVTKQP 54 (405)
Q Consensus 45 ~~~cP~~~~~ 54 (405)
...||+|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 3579999875
No 383
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=47.43 E-value=1.1e+02 Score=25.19 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=58.4
Q ss_pred chHHHHHHHHcc-ChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHH-HHHHHhcc--CcHHHHHHHHHHHHHhhccc
Q 015513 314 AIAMVTKRLLRV-SPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSK-LCMVTQAD--CEKYLKDRAKEILRLHSNVW 389 (405)
Q Consensus 314 ~i~~Lv~~l~~~-s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~-Ll~ll~~~--~~~~~k~~A~~ll~~l~~~~ 389 (405)
++..|-+.|... .+...-.|+.+|-.+.++++. ....++.....+.. |+.++... ....+|++...+++......
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~-~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGH-RFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccH-HHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 566666666432 455667788999999988875 47777887788887 88888632 34588999999999888776
Q ss_pred CCCCC
Q 015513 390 NNSPC 394 (405)
Q Consensus 390 ~~~~~ 394 (405)
.+.|-
T Consensus 118 ~~~~~ 122 (141)
T cd03565 118 RGSPD 122 (141)
T ss_pred CCCcc
Confidence 66553
No 384
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=47.39 E-value=6.4 Score=20.84 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=6.8
Q ss_pred ccCcCCcccCCCc
Q 015513 10 FICPISLQIMKDP 22 (405)
Q Consensus 10 ~~Cpi~~~~m~dP 22 (405)
|.||+|+..|.++
T Consensus 1 ~~C~~C~~~~~~~ 13 (24)
T PF13894_consen 1 FQCPICGKSFRSK 13 (24)
T ss_dssp EE-SSTS-EESSH
T ss_pred CCCcCCCCcCCcH
Confidence 4577777666554
No 385
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=47.35 E-value=1.5e+02 Score=31.97 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc--hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc-CHhh
Q 015513 228 DFFKEMVKLLKENISQQATKSGLHVLLQACPMGG--NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS-CADG 304 (405)
Q Consensus 228 g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~--n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~-~~~~ 304 (405)
..-..+.+.+.++ ++...+..+.++.+++.-.. .++ ...-.++-..-.... -..+.+....+|.+++. .++.
T Consensus 441 ~lW~~l~~~~~~~-~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~-~~~~~~~~~~il~rls~~~~~~ 515 (727)
T PF12726_consen 441 NLWKALLKSLDSD-NPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKS-LGQITDLISQILERLSDFDPSH 515 (727)
T ss_pred HHHHHHHHhhcCC-ChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHH
Confidence 4455566666665 77788888888888887442 222 111111112222211 23456677888888886 4566
Q ss_pred HHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcC
Q 015513 305 RLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVG 357 (405)
Q Consensus 305 ~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G 357 (405)
-..+..+.++..+++..++.......+.|..+|.......+..+..+++++..
T Consensus 516 L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~ 568 (727)
T PF12726_consen 516 LKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSN 568 (727)
T ss_pred HHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 77777778899999998887777899999999999997655556677766644
No 386
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=47.13 E-value=2.4e+02 Score=26.12 Aligned_cols=65 Identities=17% Similarity=0.183 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHh
Q 015513 229 FFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLC 299 (405)
Q Consensus 229 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~ 299 (405)
.+.-|+++|.++ .+-.+...+..|+.+-..-+.+.. ..+..+.+|+++|.+ +....|+.+|....
T Consensus 189 ~l~~Ll~lL~n~-~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t----~~~~eAL~VLd~~v 253 (262)
T PF14225_consen 189 ILTFLLGLLENG-PPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQT----DLWMEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHHhCC-cHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCC----ccHHHHHHHHHHHH
Confidence 444567777776 567788888888888775554433 556788888888865 34667777776654
No 387
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.82 E-value=1.2e+02 Score=31.28 Aligned_cols=68 Identities=12% Similarity=0.173 Sum_probs=43.1
Q ss_pred cHHHHHHHHHH-HhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCH
Q 015513 226 NLDFFKEMVKL-LKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCA 302 (405)
Q Consensus 226 ~~g~i~~Lv~l-L~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~ 302 (405)
..|++..|... .+++ +.+++++|.-||.-+|..+.+ .++..+++|...-+..++.-.+-+|..-|...
T Consensus 549 n~~vv~~lLh~avsD~-nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~ 617 (926)
T COG5116 549 NLGVVSTLLHYAVSDG-NDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGT 617 (926)
T ss_pred cchhHhhhheeecccC-chHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCC
Confidence 34667777776 4455 889999999999888876543 44555666655323445555555665555443
No 388
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.61 E-value=4.2e+02 Score=28.88 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=61.2
Q ss_pred HHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHcc--ChhhhHHHHHHHHHhcccCCCHHHHHH
Q 015513 275 LIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRV--SPATNDRAVHILSSISKFSATYEVVLE 352 (405)
Q Consensus 275 Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~--s~~~~e~a~~~L~~L~~~~~~~~~~~~ 352 (405)
.+..+++ ++...+..+++.|++||.-..++..-.-++ .+..++. +..+ +...+..|+.++..+-+..+.. ....
T Consensus 852 fl~gvre-pd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e-v~~~Il~-l~~~d~s~~vRRaAv~li~~lL~~tg~d-lLpi 927 (982)
T KOG4653|consen 852 FLSGVRE-PDHEFRASSLANLGQLCQLLAFQVSDFFHE-VLQLILS-LETTDGSVLVRRAAVHLLAELLNGTGED-LLPI 927 (982)
T ss_pred HHHhcCC-chHHHHHhHHHHHHHHHHHHhhhhhHHHHH-HHHHHHH-HHccCCchhhHHHHHHHHHHHHhccchh-hHHH
Confidence 3344443 356678899999999996544322211111 3333444 2233 3456778888888777654422 2221
Q ss_pred H--HhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 353 M--LSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 353 ~--~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
. .--.....+...+..+..+..|-.|...+..+-.
T Consensus 928 lr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 928 LRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 1 1223455566666667788888888776665544
No 389
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=46.59 E-value=14 Score=27.90 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=27.1
Q ss_pred ccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
-.|-||..-...| ||.||..| .+ ....|..|+..+.
T Consensus 45 ~~C~~CK~~v~q~-----g~~YCq~C--AY----kkGiCamCGKki~ 80 (90)
T PF10235_consen 45 SKCKICKTKVHQP-----GAKYCQTC--AY----KKGICAMCGKKIL 80 (90)
T ss_pred ccccccccccccC-----CCccChhh--hc----ccCcccccCCeec
Confidence 3788888866555 99999999 12 2458999999874
No 390
>PRK07758 hypothetical protein; Provisional
Probab=45.93 E-value=15 Score=28.02 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=20.2
Q ss_pred CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHH
Q 015513 26 ITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHT 66 (405)
Q Consensus 26 ~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~ 66 (405)
.-||+|.++. ..++||.|.....+..++.|-..
T Consensus 11 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~LS 43 (95)
T PRK07758 11 EKGHEYYKSS--------DCPTCPTCEKERKPKEGFLSLLS 43 (95)
T ss_pred hcccceeccC--------CCCCCcccccccCCCCCCCcccc
Confidence 3588886643 25788888776544345555443
No 391
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=45.16 E-value=3.7e+02 Score=28.04 Aligned_cols=110 Identities=11% Similarity=0.102 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHH
Q 015513 227 LDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRL 306 (405)
Q Consensus 227 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~ 306 (405)
.|.+..+++-+.++ +..++...+..|.-++.+-......+-.|.+..|.+-+.+. ++.++..|+.+|..+-....+-+
T Consensus 90 ~~~~~h~lRg~esk-dk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 90 AGTFYHLLRGTESK-DKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHhcccCc-chhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccCChH
Confidence 47777777777777 88899999999988887554444555567777777777775 77889999999988754322211
Q ss_pred HHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCC
Q 015513 307 KFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSA 345 (405)
Q Consensus 307 ~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~ 345 (405)
-. .+..|+. ++.. +...|.-..+|.++....+
T Consensus 168 n~-----~~n~l~~-~vqn-DPS~EVRr~allni~vdns 199 (885)
T COG5218 168 NR-----IVNLLKD-IVQN-DPSDEVRRLALLNISVDNS 199 (885)
T ss_pred HH-----HHHHHHH-HHhc-CcHHHHHHHHHHHeeeCCC
Confidence 11 1112333 3332 3334444556677666543
No 392
>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton]
Probab=44.57 E-value=15 Score=33.18 Aligned_cols=52 Identities=15% Similarity=0.214 Sum_probs=34.5
Q ss_pred CCCCCCcccCcCCcccCCCccccCCCCcccHHHHHH---HHhcCCCCCCCCCCCCC
Q 015513 3 EIEVPQYFICPISLQIMKDPVTAITGISYDRESIEK---WLKTAKDTTCPVTKQPL 55 (405)
Q Consensus 3 ~~~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~---~~~~~~~~~cP~~~~~~ 55 (405)
+.++-.++.||-|.+.|.-||--.|....+-+.|-. .|-. .+.+|..|.+|+
T Consensus 177 aRevk~eLyClrChD~mgipiCgaC~rpIeervi~amgKhWHv-eHFvCa~CekPF 231 (332)
T KOG2272|consen 177 AREVKGELYCLRCHDKMGIPICGACRRPIEERVIFAMGKHWHV-EHFVCAKCEKPF 231 (332)
T ss_pred hhhhccceeccccccccCCcccccccCchHHHHHHHhccccch-hheeehhcCCcc
Confidence 345677888888888888888766665555555532 2322 267788887775
No 393
>PRK05978 hypothetical protein; Provisional
Probab=44.40 E-value=13 Score=30.97 Aligned_cols=11 Identities=9% Similarity=0.398 Sum_probs=6.0
Q ss_pred CCCCCCCCCCC
Q 015513 46 TTCPVTKQPLP 56 (405)
Q Consensus 46 ~~cP~~~~~~~ 56 (405)
.+||.|+.++.
T Consensus 53 ~~C~~CG~~~~ 63 (148)
T PRK05978 53 DHCAACGEDFT 63 (148)
T ss_pred CCccccCCccc
Confidence 45666655553
No 394
>PLN03086 PRLI-interacting factor K; Provisional
Probab=44.26 E-value=28 Score=35.78 Aligned_cols=52 Identities=15% Similarity=0.307 Sum_probs=29.6
Q ss_pred CCCCcccCcCCcccCC------------CccccCCCCcccHHHHHHHHhcC---CCCCCCCCCCCCC
Q 015513 5 EVPQYFICPISLQIMK------------DPVTAITGISYDRESIEKWLKTA---KDTTCPVTKQPLP 56 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~------------dPv~~~~g~~~~r~~I~~~~~~~---~~~~cP~~~~~~~ 56 (405)
.+++++.||.|++.|. .|+.-+||..+.|..+.++.... ....|+.|+..+.
T Consensus 449 el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~CpCg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~ 515 (567)
T PLN03086 449 EAKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCPCGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQ 515 (567)
T ss_pred ccccCccCCCCCCccchHHHHHHHHhcCCCccCCCCCCcchhHHHhhhhccCCCCceeCCCCCCccc
Confidence 3456677777766553 24444477777776666664321 1234777766653
No 395
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=43.91 E-value=1.9e+02 Score=30.62 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=82.4
Q ss_pred hHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHH
Q 015513 134 VVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVL 213 (405)
Q Consensus 134 ~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~ 213 (405)
..+.++.+|.....+.++..|+.++..+-.++..-+. ..+ +.. .+|.+-.+-.. ..+..++.+++.++..+.
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~--~~v-k~~--ilP~l~~l~~~---tt~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV--PFV-KQA--ILPRLKNLAFK---TTNLYVKVNVLPCLAGLI 457 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH--HHH-HHH--HHHHhhcchhc---ccchHHHHHHHHHHHHHH
Confidence 3444455555444455556789999888877643321 222 222 66666665333 167889999999999988
Q ss_pred hhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcC
Q 015513 214 ELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTK 282 (405)
Q Consensus 214 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~ 282 (405)
..-+ +..+. .-+.++.+-.+.. ++.....-+++..++.....++..++...++|.++.+...+
T Consensus 458 q~lD-~~~v~----d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 458 QRLD-KAAVL----DELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHH-HHHhH----HHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 3221 22221 3344444444444 77777777777777777665544555567999998887654
No 396
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=43.68 E-value=63 Score=25.65 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhh
Q 015513 229 FFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEA 269 (405)
Q Consensus 229 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~ 269 (405)
+|+.||.-|.+. ++++...|..+|...|..+..-..++..
T Consensus 9 ~i~lLv~QL~D~-~~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDP-SPEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 578899999887 8899999999999999987666666653
No 397
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=43.50 E-value=42 Score=26.37 Aligned_cols=38 Identities=16% Similarity=0.047 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcC
Q 015513 245 ATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTK 282 (405)
Q Consensus 245 ~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~ 282 (405)
......+.|..|+..++--..+++.|+++.|+.||...
T Consensus 62 dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~He 99 (108)
T PF08216_consen 62 DLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHE 99 (108)
T ss_pred HHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCC
Confidence 34567788889999999888999999999999999764
No 398
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=43.27 E-value=26 Score=19.74 Aligned_cols=26 Identities=23% Similarity=0.125 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhh
Q 015513 245 ATKSGLHVLLQACPMGGNRVKITEANAVFELIELEL 280 (405)
Q Consensus 245 ~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~ 280 (405)
++..|+++|.++.. .-++|+|++.|.
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 35566777766654 447788887764
No 399
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.13 E-value=5.9e+02 Score=29.53 Aligned_cols=168 Identities=13% Similarity=0.106 Sum_probs=92.1
Q ss_pred CcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhc--CChHHHHHHHHHHHHhccCC-chhHHHHhhcchH
Q 015513 197 RHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKEN--ISQQATKSGLHVLLQACPMG-GNRVKITEANAVF 273 (405)
Q Consensus 197 ~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~--~~~~~~~~a~~aL~~L~~~~-~n~~~~v~~g~v~ 273 (405)
...+.+.....+|.++.........-. -..+++.|-.+...+ ......+.+...|+-++++- ..-..=.=.+.|.
T Consensus 854 ~~~evr~~sl~~l~silet~ge~ll~~--w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lid 931 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEHLLHG--WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLID 931 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchhhccc--cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHH
Confidence 556777788888888765443222111 123333333333222 13456667777777777643 1111112246777
Q ss_pred HHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHH-----HHHHhcccCCCHH
Q 015513 274 ELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVH-----ILSSISKFSATYE 348 (405)
Q Consensus 274 ~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~-----~L~~L~~~~~~~~ 348 (405)
.++..-+...|-.+--.|++.+|.+...-.++..=..+.+.-...++.+.. +...++.--. .+.+|++...+.
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s-s~~~~~~l~e~lwi~ll~~L~~~~~ds- 1009 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS-SMKSKEILPEVLWIMLLVHLADLCEDS- 1009 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc-cccchhhhhhHHHHHHHHHHHHHhccc-
Confidence 777777665567788889999999875444433222333333344443322 3333332222 233455555442
Q ss_pred HHHHHHhcChHHHHHHHHhccC
Q 015513 349 VVLEMLSVGAVSKLCMVTQADC 370 (405)
Q Consensus 349 ~~~~~~~~G~v~~Ll~ll~~~~ 370 (405)
+.-++.|+++-+.+.+.+++
T Consensus 1010 --r~eVRngAvqtlfri~~Shg 1029 (1610)
T KOG1848|consen 1010 --RAEVRNGAVQTLFRIFNSHG 1029 (1610)
T ss_pred --hHHHhhhHHHHHHHHHhhhc
Confidence 34466799999999998876
No 400
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=42.87 E-value=2.4 Score=41.02 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=29.7
Q ss_pred CCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
--+|+|.+|++.+.||..+. -|..-|-. . -...||.|.+.|+-
T Consensus 265 iGdyiCqLCK~kYeD~F~LA-QHrC~RIV------~-vEYrCPEC~KVFsC 307 (500)
T KOG3993|consen 265 IGDYICQLCKEKYEDAFALA-QHRCPRIV------H-VEYRCPECDKVFSC 307 (500)
T ss_pred HHHHHHHHHHHhhhhHHHHh-hccCCeeE------E-eeecCCcccccccC
Confidence 34799999999999999886 33322211 1 13579999988753
No 401
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=42.47 E-value=5.3e+02 Score=28.87 Aligned_cols=216 Identities=15% Similarity=0.051 Sum_probs=117.8
Q ss_pred hHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHH
Q 015513 134 VVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVL 213 (405)
Q Consensus 134 ~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~ 213 (405)
+|+..+..|.+...+.+..++=-|+.-+..++...+ ..+.. . +|...+.++.- ..+...-..|+.+|..|+
T Consensus 338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad-~---vi~svid~~~p---~e~~~aWHgacLaLAELA 408 (1133)
T KOG1943|consen 338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELAD-Q---VIGSVIDLFNP---AEDDSAWHGACLALAELA 408 (1133)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHH-H---HHHHHHHhcCc---CCchhHHHHHHHHHHHHH
Confidence 344444444333333334445566666666665543 23322 1 66666675553 244666778888999887
Q ss_pred hhhccchhhhcccHHHHHHHHHHHh----h---cCChHHHHHHHHHHHHhccCCc-h-hHHHHhhcchHHHHHHhhcCCC
Q 015513 214 ELASKGLLESTLNLDFFKEMVKLLK----E---NISQQATKSGLHVLLQACPMGG-N-RVKITEANAVFELIELELTKPE 284 (405)
Q Consensus 214 ~~~~~~~~i~~~~~g~i~~Lv~lL~----~---~~~~~~~~~a~~aL~~L~~~~~-n-~~~~v~~g~v~~Lv~lL~~~~~ 284 (405)
...--..... ..+++.+++-|. . .....+|.+|+-++|.++..-+ + -+.++..=+-..|+..+.+. +
T Consensus 409 ~rGlLlps~l---~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr-e 484 (1133)
T KOG1943|consen 409 LRGLLLPSLL---EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR-E 484 (1133)
T ss_pred hcCCcchHHH---HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc-h
Confidence 6542211111 244555554442 1 1245789999999999987432 2 22233322222344445553 6
Q ss_pred CCcHHHHHHHHHHHhcCHhh--------------------------HHHHHhcccchHHHHHHHHcc-----ChhhhHHH
Q 015513 285 KSTTELIFNLLAQLCSCADG--------------------------RLKFREHAGAIAMVTKRLLRV-----SPATNDRA 333 (405)
Q Consensus 285 ~~~~e~a~~~L~~L~~~~~~--------------------------~~~i~~~~g~i~~Lv~~l~~~-----s~~~~e~a 333 (405)
..++..|.++|-...+.-.+ ...+..-.|-..++++.++.. +...+|.+
T Consensus 485 vncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irela 564 (1133)
T KOG1943|consen 485 VNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELA 564 (1133)
T ss_pred hhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHH
Confidence 77888888888776542111 112222234455565555432 35668888
Q ss_pred HHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhc
Q 015513 334 VHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQA 368 (405)
Q Consensus 334 ~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~ 368 (405)
..+|..|+.- ..+-...+.+++|+.-.-+
T Consensus 565 a~aL~~Ls~~------~pk~~a~~~L~~lld~~ls 593 (1133)
T KOG1943|consen 565 AYALHKLSLT------EPKYLADYVLPPLLDSTLS 593 (1133)
T ss_pred HHHHHHHHHh------hHHhhcccchhhhhhhhcC
Confidence 8888887743 3334445678888876654
No 402
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=42.35 E-value=3.1e+02 Score=26.16 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=100.3
Q ss_pred HHHHHHHHHhhccCCCchhHHHHHHHHHhcCC-Cch-hhHHhhcccchhHHHHHHHHHhhhcCCCc---------HHhHH
Q 015513 135 VRALVLFIITSYKGNKTTGLEEALRILSLVWS-PSN-ENKALVDHHNQDLIGALMWVLQWENNDRH---------VAVKT 203 (405)
Q Consensus 135 v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~-~~~-~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~---------~~~~~ 203 (405)
+..+.+.|.+.. ......++.+|.++.. +.. ..++++..-+ =..+.|.+++.....+.. ..+|.
T Consensus 58 ~k~lyr~L~~~~----~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd-~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~ 132 (330)
T PF11707_consen 58 LKLLYRSLSSSK----PSLTNPALRLLTAIVSFDGGALAREVLRSFD-FSLKSLPKLLTPRKKEKEKDSESSKSKPSIRT 132 (330)
T ss_pred HHHHHHHhCcCc----HHHHHHHHHHHHHHHccCCHHHHHHHHHhcC-CchhhHHHHhccccccccccccccccCcCHHH
Confidence 555566665432 2235577777777766 332 2333333222 134455555532100011 27888
Q ss_pred HHHHHHHHHHhhhc--cchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHH-hccCC----chhHHHHhhcchHHHH
Q 015513 204 SAMIVLKMVLELAS--KGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQ-ACPMG----GNRVKITEANAVFELI 276 (405)
Q Consensus 204 ~A~~~L~~L~~~~~--~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~-L~~~~----~n~~~~v~~g~v~~Lv 276 (405)
+.+..+..+....+ .+..+. ...+.+..+.+-|... +.+.....+.+|.. +..++ ..+..+-+..++..|+
T Consensus 133 ~fI~F~Lsfl~~~~~~~~~~lL-~~~~~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~ 210 (330)
T PF11707_consen 133 NFIRFWLSFLSSGDPELKRDLL-SQKKLMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLA 210 (330)
T ss_pred HHHHHHHHHHccCCHHHHHHHH-HcCchHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHH
Confidence 88888877765433 334444 4556678888888775 78899999999985 44333 2566666778889999
Q ss_pred HHhhcCCCC----CcHHHHHHHHHHHhcCHhh
Q 015513 277 ELELTKPEK----STTELIFNLLAQLCSCADG 304 (405)
Q Consensus 277 ~lL~~~~~~----~~~e~a~~~L~~L~~~~~~ 304 (405)
.+.... ++ .+.+.+-..|..+|.++..
T Consensus 211 ~Ly~~~-~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 211 SLYSRD-GEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred HHhccc-CCcccchHHHHHHHHHHHHhcCCCc
Confidence 976654 44 7889999999999976653
No 403
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=41.62 E-value=20 Score=37.61 Aligned_cols=45 Identities=18% Similarity=0.377 Sum_probs=33.0
Q ss_pred cccCcCCcccCCCcccc--CCCCcccHHHHHHHHhcCCCCCCCC-CCCCC
Q 015513 9 YFICPISLQIMKDPVTA--ITGISYDRESIEKWLKTAKDTTCPV-TKQPL 55 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv~~--~~g~~~~r~~I~~~~~~~~~~~cP~-~~~~~ 55 (405)
.|.|.||.--.+---.+ -|||.---+|..+||..+ ..||. |+...
T Consensus 1028 ~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~g--d~CpsGCGC~C 1075 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTG--DVCPSGCGCHC 1075 (1081)
T ss_pred eeeeeeEeeEeeccchhhccccccccHHHHHHHHhcC--CcCCCCCCcCc
Confidence 46788887555544333 599999999999999874 58997 66544
No 404
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.53 E-value=19 Score=36.19 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=29.5
Q ss_pred CcccCcCCcccCCC-ccccCCCCcccHHHHHHHHhc
Q 015513 8 QYFICPISLQIMKD-PVTAITGISYDRESIEKWLKT 42 (405)
Q Consensus 8 ~~~~Cpi~~~~m~d-Pv~~~~g~~~~r~~I~~~~~~ 42 (405)
....|.||.+-..+ .+.+.|||.||..|+..++..
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 45789999988886 666689999999999999864
No 405
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.00 E-value=6.5e+02 Score=29.48 Aligned_cols=258 Identities=12% Similarity=0.142 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHH
Q 015513 134 VVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVL 213 (405)
Q Consensus 134 ~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~ 213 (405)
.||.|.++=-+++.. ...|..-+++.-.. +.|..+.+.=.+.+.-|+.-|.+ ....+|+.++.+|..|.
T Consensus 999 LIPrLyRY~yDP~~~-----Vq~aM~sIW~~Li~--D~k~~vd~y~neIl~eLL~~lt~----kewRVReasclAL~dLl 1067 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKK-----VQDAMTSIWNALIT--DSKKVVDEYLNEILDELLVNLTS----KEWRVREASCLALADLL 1067 (1702)
T ss_pred hhHHHhhhccCCcHH-----HHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHHH
Q ss_pred hhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHh--------ccCCchhHHHHhhcchHHHHHHhhcCCCC
Q 015513 214 ELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQA--------CPMGGNRVKITEANAVFELIELELTKPEK 285 (405)
Q Consensus 214 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L--------~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~ 285 (405)
...+.....- .-......+.+..++= ...+|++|-++...| ......+..-+-+.++|.|++-=--..-.
T Consensus 1068 ~g~~~~~~~e-~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~ 1145 (1702)
T KOG0915|consen 1068 QGRPFDQVKE-KLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVN 1145 (1702)
T ss_pred cCCChHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchH
Q ss_pred CcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhh-----------hHHHHHHHHH-hcccCCCHHHHHHH
Q 015513 286 STTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPAT-----------NDRAVHILSS-ISKFSATYEVVLEM 353 (405)
Q Consensus 286 ~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~-----------~e~a~~~L~~-L~~~~~~~~~~~~~ 353 (405)
+++..+++++.-|+.+....-+--- +.-||.|++..-...+.. ...|+..++. .++.++-=+.....
T Consensus 1146 evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~c 1224 (1702)
T KOG0915|consen 1146 EVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKC 1224 (1702)
T ss_pred HHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHH
Q ss_pred Hh-------cChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccCCC--CCcchhhhhhcCC
Q 015513 354 LS-------VGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWNNS--PCIQVYLLTRYQG 405 (405)
Q Consensus 354 ~~-------~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~~~--~~~~~~~~~~~~~ 405 (405)
++ .-.+|.+.+++.++-.-.+|-.++..+-.+..-+... |=...+|++=+||
T Consensus 1225 i~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g 1285 (1702)
T KOG0915|consen 1225 INYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPG 1285 (1702)
T ss_pred HHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhc
No 406
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=40.99 E-value=16 Score=25.32 Aligned_cols=13 Identities=38% Similarity=1.017 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCC
Q 015513 45 DTTCPVTKQPLPR 57 (405)
Q Consensus 45 ~~~cP~~~~~~~~ 57 (405)
|.+||.||.++++
T Consensus 3 HkHC~~CG~~Ip~ 15 (59)
T PF09889_consen 3 HKHCPVCGKPIPP 15 (59)
T ss_pred CCcCCcCCCcCCc
Confidence 6799999998864
No 407
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=40.07 E-value=2.5e+02 Score=24.38 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=47.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhccCCc-hhHHHHhhcchHHHH----HHhhcCCCCCcHHHHHHHHHHHhcC
Q 015513 230 FKEMVKLLKENISQQATKSGLHVLLQACPMGG-NRVKITEANAVFELI----ELELTKPEKSTTELIFNLLAQLCSC 301 (405)
Q Consensus 230 i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~-n~~~~v~~g~v~~Lv----~lL~~~~~~~~~e~a~~~L~~L~~~ 301 (405)
-..|+..|....+.......+++|..|..+-. +|- +.|.++.++ .++.+. |..++..++.++..|...
T Consensus 103 H~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~-d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 103 HRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHR-DPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence 34566667666677888899999999988655 332 235555544 444553 788899999999888653
No 408
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=39.92 E-value=15 Score=35.31 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=34.5
Q ss_pred CCcccCcCCcccCCCcc----ccCCCCcccHHHHHHHHhcCCC-----CCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDPV----TAITGISYDRESIEKWLKTAKD-----TTCPVTKQPL 55 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv----~~~~g~~~~r~~I~~~~~~~~~-----~~cP~~~~~~ 55 (405)
..+|.||+...+|.+-- +..+|..||-.+|++......+ .--|.+|+.+
T Consensus 99 ~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~Di 156 (518)
T KOG0883|consen 99 EGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRADI 156 (518)
T ss_pred CCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhce
Confidence 56799999999999853 3369999999999986321111 1246776654
No 409
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=39.88 E-value=19 Score=22.37 Aligned_cols=11 Identities=27% Similarity=0.450 Sum_probs=8.4
Q ss_pred CCCCCCCCCCC
Q 015513 45 DTTCPVTKQPL 55 (405)
Q Consensus 45 ~~~cP~~~~~~ 55 (405)
...||.|+..+
T Consensus 26 ~~~CP~Cg~~~ 36 (41)
T smart00834 26 LATCPECGGDV 36 (41)
T ss_pred CCCCCCCCCcc
Confidence 45799998854
No 410
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=39.79 E-value=34 Score=33.87 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=30.4
Q ss_pred CCCCCccc-CcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHH
Q 015513 4 IEVPQYFI-CPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTL 67 (405)
Q Consensus 4 ~~~~~~~~-Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l 67 (405)
.+++.+.. ||-|..+.+.|-. +.|+ .-.||.|+..+..+.....+..+
T Consensus 7 ~~~~~~~~~C~~Cd~l~~~~~l-~~g~---------------~a~CpRCg~~L~~~~~~~~~~~l 55 (403)
T TIGR00155 7 HHPAAKHILCSQCDMLVALPRI-ESGQ---------------KAACPRCGTTLTVGWDWSLQRPA 55 (403)
T ss_pred cCCCCCeeeCCCCCCcccccCC-CCCC---------------eeECCCCCCCCcCCCCCCHHHHH
Confidence 34555554 9999999988844 3232 34799999998543334344333
No 411
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=39.37 E-value=14 Score=20.83 Aligned_cols=9 Identities=22% Similarity=0.844 Sum_probs=4.9
Q ss_pred cCcCCcccC
Q 015513 11 ICPISLQIM 19 (405)
Q Consensus 11 ~Cpi~~~~m 19 (405)
.||||.+.|
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 466665544
No 412
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=39.14 E-value=4.6e+02 Score=27.13 Aligned_cols=64 Identities=11% Similarity=0.126 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhc-CChHHHHHHHHHHHH
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKEN-ISQQATKSGLHVLLQ 255 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~ 255 (405)
.++.|..++.... ..+...|..|+++|..++.... ..+-+.|..++.+. .++++|.+|..+|..
T Consensus 478 ~i~~l~~~l~~~~-~~~~~iR~~Av~Alr~~a~~~p---------~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 478 SIKVLEPYLEGAE-PLSTFIRLAAILALRNLAKRDP---------RKVQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 4455555554100 1456789999999998875332 12345567777663 467888777766543
No 413
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.98 E-value=58 Score=32.80 Aligned_cols=81 Identities=17% Similarity=0.273 Sum_probs=58.5
Q ss_pred chHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhcc-CcHHHHHHHHHHHHHhhcccCCC
Q 015513 314 AIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQAD-CEKYLKDRAKEILRLHSNVWNNS 392 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~-~~~~~k~~A~~ll~~l~~~~~~~ 392 (405)
++..|.+.|...++..+-.|+.+|-.+.++++. .....+.+.+++..++...... ....+|+++-.+|. .|++.
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~-~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~----~W~~a 113 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGY-SFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELID----TWQQA 113 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHH----HHHHH
Confidence 455555655445567788888888888888775 3667888899999999888776 67788888777665 56666
Q ss_pred CCc-chhh
Q 015513 393 PCI-QVYL 399 (405)
Q Consensus 393 ~~~-~~~~ 399 (405)
.|. ..|+
T Consensus 114 f~~~~~~~ 121 (470)
T KOG1087|consen 114 FCGPDGYL 121 (470)
T ss_pred ccCCCCcc
Confidence 665 4443
No 414
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=37.97 E-value=1.9e+02 Score=22.34 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHH
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHV 252 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a 252 (405)
.+..|++.... .+...++.+...|..|...+....... +.|+..-|-++=..- ++..+...-..
T Consensus 31 Ll~~LleWFnf----~~~~~~~~VL~Ll~~L~~~~~a~~~l~--~iG~~~fL~klr~~~-~~~~~~~id~i 94 (98)
T PF14726_consen 31 LLKQLLEWFNF----PPVPMKEEVLALLLRLLKSPYAAQILR--DIGAVRFLSKLRPNV-EPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHHhCC----CCCccHHHHHHHHHHHHhCcHHHHHHH--HccHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 44444444443 566688899999999988876666554 667766655443332 44444444333
No 415
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=37.68 E-value=2.8e+02 Score=24.17 Aligned_cols=72 Identities=14% Similarity=0.062 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhh-hccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCC
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLEL-ASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMG 260 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~-~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~ 260 (405)
-+|.++.=|+. .....+.-|...+..|... ...+..-+ -...|.+|-.-|.+. ++++...++.+|..|+...
T Consensus 39 ~Lpif~dGL~E----t~~Py~flA~~g~~dll~~~~~~kilPv--lPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 39 YLPIFFDGLRE----TEHPYRFLARQGIKDLLERGGGEKILPV--LPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSS 111 (183)
T ss_pred HHHHHHhhhhc----cCccHHHHHHHHHHHHHHhcchhHHHHH--HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence 56777766665 6677777888888887666 33332222 245667777777777 8999999999999996543
No 416
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=37.63 E-value=29 Score=30.02 Aligned_cols=34 Identities=24% Similarity=0.727 Sum_probs=24.0
Q ss_pred ccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQ 53 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~ 53 (405)
++||.|+.+|-|-+ |---+.+|-+|.. .||.-.+
T Consensus 88 YICPFTGKVF~DNt-----~~nPQDAIYDWvS-----kCPeN~E 121 (238)
T PF10915_consen 88 YICPFTGKVFGDNT-----HPNPQDAIYDWVS-----KCPENTE 121 (238)
T ss_pred EEcCCcCccccCCC-----CCChHHHHHHHHh-----hCCccch
Confidence 68999999888864 2334788888863 5777543
No 417
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=37.29 E-value=2.7e+02 Score=28.31 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=50.7
Q ss_pred ccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc---CCc-----------hhHHHHhhcchHHHHHHhhcCCCCCcHHH
Q 015513 225 LNLDFFKEMVKLLKENISQQATKSGLHVLLQACP---MGG-----------NRVKITEANAVFELIELELTKPEKSTTEL 290 (405)
Q Consensus 225 ~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~---~~~-----------n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~ 290 (405)
.+.+.|+.|+++|....+...+.+|+..|..+.. +.. --..++....|..|++.+..+........
T Consensus 59 ~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn 138 (475)
T PF04499_consen 59 AEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVN 138 (475)
T ss_pred HHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHH
Confidence 3578999999999876688888888888777633 211 23445666777777777664213445566
Q ss_pred HHHHHHHHhc
Q 015513 291 IFNLLAQLCS 300 (405)
Q Consensus 291 a~~~L~~L~~ 300 (405)
++.++-.|-+
T Consensus 139 ~v~IlieLIR 148 (475)
T PF04499_consen 139 GVSILIELIR 148 (475)
T ss_pred HHHHHHHHHH
Confidence 6666666653
No 418
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=36.92 E-value=12 Score=28.55 Aligned_cols=40 Identities=10% Similarity=0.291 Sum_probs=27.6
Q ss_pred CCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 6 VPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
+..+|.||.|...= .+.|+.++.. .-|...|.+|.+.|+.
T Consensus 20 ldt~FnClfcnHek------~v~~~~Dk~~------~iG~~sC~iC~esFqt 59 (109)
T KOG3214|consen 20 LDTQFNCLFCNHEK------SVSCTLDKKH------NIGKASCRICEESFQT 59 (109)
T ss_pred hheeeccCcccccc------ceeeeehhhc------Ccceeeeeehhhhhcc
Confidence 45679999998643 5566766643 1246689999988854
No 419
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=36.69 E-value=2.1e+02 Score=31.21 Aligned_cols=110 Identities=15% Similarity=0.210 Sum_probs=64.4
Q ss_pred hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCC-cHHhHHHHHHHHH
Q 015513 132 AFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDR-HVAVKTSAMIVLK 210 (405)
Q Consensus 132 ~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~-~~~~~~~A~~~L~ 210 (405)
....|.|++.|+-++ ...+-.++.++.-+..... .++.+.-+..+|.+..+-++. +. ...+|+.|..+|.
T Consensus 908 ~~LlPLLLq~Ls~~D----~~v~vstl~~i~~~l~~~~---tL~t~~~~Tlvp~lLsls~~~--~n~~~~VR~~ALqcL~ 978 (1030)
T KOG1967|consen 908 PMLLPLLLQALSMPD----VIVRVSTLRTIPMLLTESE---TLQTEHLSTLVPYLLSLSSDN--DNNMMVVREDALQCLN 978 (1030)
T ss_pred hhHHHHHHHhcCCCc----cchhhhHhhhhhHHHHhcc---ccchHHHhHHHHHHHhcCCCC--CcchhHHHHHHHHHHH
Confidence 355666666665432 2335555555544432211 222221102566665554441 12 2678999999999
Q ss_pred HHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHH
Q 015513 211 MVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHV 252 (405)
Q Consensus 211 ~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a 252 (405)
.|...-..+.... -...++.+|.+.|.++ .--+|+.|..+
T Consensus 979 aL~~~~P~~~l~~-fr~~Vl~al~k~LdDk-KRlVR~eAv~t 1018 (1030)
T KOG1967|consen 979 ALTRRLPTKSLLS-FRPLVLRALIKILDDK-KRLVRKEAVDT 1018 (1030)
T ss_pred HHhccCCCccccc-ccHHHHHHhhhccCcH-HHHHHHHHHHH
Confidence 9988544444444 4578899999999887 56677777765
No 420
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=35.26 E-value=93 Score=29.25 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCC---------------chhHHHHhhcchHHHHHHhhc
Q 015513 226 NLDFFKEMVKLLKENISQQATKSGLHVLLQACPMG---------------GNRVKITEANAVFELIELELT 281 (405)
Q Consensus 226 ~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~---------------~n~~~~v~~g~v~~Lv~lL~~ 281 (405)
....+..+++-|... +...+-.|+++|..++.+. .|...+.+.|++++|+++|..
T Consensus 58 ~~~~i~~ll~~L~~~-~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 58 RKDFIEKLLDQLESS-DSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 346778888888877 7778888888888886632 167778889999999999964
No 421
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=35.05 E-value=2.9e+02 Score=29.24 Aligned_cols=124 Identities=11% Similarity=0.100 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
.+|.|..-+.. .+..+|+.++..+-.++..-+. .. ++.-.+|.|-.+.....+..++.+++-++..+. +
T Consensus 390 IlplL~~S~~~----~~~~iQ~~~L~~lptv~e~iD~--~~--vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q 458 (700)
T KOG2137|consen 390 ILPLLYRSLED----SDVQIQELALQILPTVAESIDV--PF--VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---Q 458 (700)
T ss_pred HHHHHHHHhcC----cchhhHHHHHHhhhHHHHhccH--HH--HHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---H
Confidence 44444444444 7788888888888887765442 12 245667777666544447788888888888887 2
Q ss_pred hhHHHHhhcchHH---HHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHH
Q 015513 262 NRVKITEANAVFE---LIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKR 321 (405)
Q Consensus 262 n~~~~v~~g~v~~---Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~ 321 (405)
.+-.+.+++. +.+-.... +..+.-..+.+..++....-++..+. +...+|.++-+
T Consensus 459 ---~lD~~~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g~ev~-~~~VlPlli~l 516 (700)
T KOG2137|consen 459 ---RLDKAAVLDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSGVEVM-AENVLPLLIPL 516 (700)
T ss_pred ---HHHHHHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccceeee-hhhhhhhhhhh
Confidence 2222333333 44444332 55666666666666654333322222 23456666653
No 422
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=34.70 E-value=1.9e+02 Score=22.54 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=47.3
Q ss_pred chHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHH-----hccCcHHHHHHHHHHHHHh
Q 015513 314 AIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVT-----QADCEKYLKDRAKEILRLH 385 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll-----~~~~~~~~k~~A~~ll~~l 385 (405)
++..|-+.|...+....-.|+.+|-.+.++++. ....++.+......++.+. ..+-+..+|+++..++...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~-~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGE-RFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH-HHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 455566655555567777888888888888775 4666776666655555431 1123678899998888754
No 423
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=34.51 E-value=2.2e+02 Score=23.49 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHH-HHHHHhhc--CChHHHHHHHHHHHHhcc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKE-MVKLLKEN--ISQQATKSGLHVLLQACP 258 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~-Lv~lL~~~--~~~~~~~~a~~aL~~L~~ 258 (405)
++..|-+-|.+ +.++..+..|..+|..+..+.......-+.+-+++.. |++++... .+..++...+..+...+.
T Consensus 39 a~ralkkRl~~---~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNG---NKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHcc---CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 66666666653 1577888889888888876654333221135689987 99999743 245788888888877765
No 424
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=34.40 E-value=1.8e+02 Score=29.45 Aligned_cols=43 Identities=7% Similarity=0.101 Sum_probs=35.2
Q ss_pred HHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccC
Q 015513 348 EVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWN 390 (405)
Q Consensus 348 ~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~ 390 (405)
...+.+.+.+.|+.|+.+|....+...+..|+.+|+.+-+..+
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 5677777899999999999866678899999999887766543
No 425
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=34.11 E-value=13 Score=24.77 Aligned_cols=9 Identities=33% Similarity=0.508 Sum_probs=7.2
Q ss_pred CCCCCCCCC
Q 015513 45 DTTCPVTKQ 53 (405)
Q Consensus 45 ~~~cP~~~~ 53 (405)
...||.|+.
T Consensus 26 ~~~CP~Cg~ 34 (52)
T TIGR02605 26 LATCPECGG 34 (52)
T ss_pred CCCCCCCCC
Confidence 457999987
No 426
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=33.86 E-value=24 Score=19.77 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=12.0
Q ss_pred cccCcCCcccCCCcccc
Q 015513 9 YFICPISLQIMKDPVTA 25 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv~~ 25 (405)
.|.|++|...|.+.-.+
T Consensus 1 q~~C~~C~k~f~~~~~~ 17 (27)
T PF12171_consen 1 QFYCDACDKYFSSENQL 17 (27)
T ss_dssp -CBBTTTTBBBSSHHHH
T ss_pred CCCcccCCCCcCCHHHH
Confidence 37788888888876543
No 427
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=33.57 E-value=21 Score=33.35 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=20.1
Q ss_pred ccCCCCcccHHHHHHHHhcCCCCCCCCCCCCC
Q 015513 24 TAITGISYDRESIEKWLKTAKDTTCPVTKQPL 55 (405)
Q Consensus 24 ~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~ 55 (405)
+++|.|.||-.|-..- ..+.||.|-.++
T Consensus 106 mIPCkHvFCl~CAr~~----~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 106 MIPCKHVFCLECARSD----SDKICPLCDDRV 133 (389)
T ss_pred ccccchhhhhhhhhcC----ccccCcCcccHH
Confidence 7899999999984321 145799996543
No 428
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=33.24 E-value=2.5e+02 Score=25.99 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQA 256 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 256 (405)
.+-.|+.+|.+ +..-.+.....+|..+-..-+.+...+ .+.|.+|.++|+++. -..|+.+|.+.
T Consensus 189 ~l~~Ll~lL~n----~~~w~~~~~L~iL~~ll~~~d~~~~~~---~dlispllrlL~t~~----~~eAL~VLd~~ 252 (262)
T PF14225_consen 189 ILTFLLGLLEN----GPPWLRRKTLQILKVLLPHVDMRSPHG---ADLISPLLRLLQTDL----WMEALEVLDEI 252 (262)
T ss_pred HHHHHHHHHhC----CcHHHHHHHHHHHHHHhccccCCCCcc---hHHHHHHHHHhCCcc----HHHHHHHHHHH
Confidence 56678888887 788999999999999987666555544 579999999998763 33355555443
No 429
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=33.11 E-value=5.9e+02 Score=27.28 Aligned_cols=105 Identities=9% Similarity=0.090 Sum_probs=75.3
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
-+|.|+..+..+ ++|.+|.+|+..|..+...-.+-. + .--..|.+-|.+. +..+++.++.++.+|-....
T Consensus 934 hlpllIt~mek~---p~P~IR~NaVvglgD~~vcfN~~~-----d-e~t~yLyrrL~De-~~~V~rtclmti~fLilagq 1003 (1128)
T COG5098 934 HLPLLITSMEKH---PIPRIRANAVVGLGDFLVCFNTTA-----D-EHTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQ 1003 (1128)
T ss_pred HHHHHHHHHhhC---CCcceeccceeeccccceehhhhh-----H-HHHHHHHHHhcch-hhHHHHHHHHHHHHHHHccc
Confidence 589999999852 789999999998888765332211 1 2234566666665 78899999999998865332
Q ss_pred hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcC
Q 015513 262 NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSC 301 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~ 301 (405)
-+ -.|-.+-++.+|.+. +.++.+.|-..+..++..
T Consensus 1004 ~K----VKGqlg~ma~~L~de-da~Isdmar~fft~~a~K 1038 (1128)
T COG5098 1004 LK----VKGQLGKMALLLTDE-DAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred ee----eccchhhhHhhccCC-cchHHHHHHHHHHHHHhc
Confidence 22 147777788888775 888899888888888753
No 430
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=32.62 E-value=1.2e+02 Score=25.36 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=19.2
Q ss_pred chHHHHHHhhcCCCCCcHHHHHHHHHHHhc
Q 015513 271 AVFELIELELTKPEKSTTELIFNLLAQLCS 300 (405)
Q Consensus 271 ~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~ 300 (405)
-|.+||++|.+. +..+.+.|+.+|.+-.-
T Consensus 95 NV~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 95 NVQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp THHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred cHHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 367888888764 77888889988877543
No 431
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.45 E-value=6.7e+02 Score=27.10 Aligned_cols=66 Identities=9% Similarity=-0.067 Sum_probs=44.3
Q ss_pred HHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 185 ALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 185 ~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
.+-..|++ ........|+.++.+|.... .+.+. .++..|--+++++ ....+-+|.++|..++....
T Consensus 249 fl~s~l~~----K~emV~~EaArai~~l~~~~--~r~l~----pavs~Lq~flssp-~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 249 FLESCLRH----KSEMVIYEAARAIVSLPNTN--SRELA----PAVSVLQLFLSSP-KVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred HHHHHHhc----hhHHHHHHHHHHHhhccccC--Hhhcc----hHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHhCC
Confidence 33344554 56677788888888885432 22222 3666677777776 67888999999999987554
No 432
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=32.45 E-value=5.3e+02 Score=25.94 Aligned_cols=9 Identities=33% Similarity=0.730 Sum_probs=5.2
Q ss_pred hHHHHHHHH
Q 015513 358 AVSKLCMVT 366 (405)
Q Consensus 358 ~v~~Ll~ll 366 (405)
++..|+.+|
T Consensus 251 ~i~~L~~iL 259 (464)
T PF11864_consen 251 AIRTLCDIL 259 (464)
T ss_pred HHHHHHHHH
Confidence 455566666
No 433
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=32.26 E-value=27 Score=23.49 Aligned_cols=12 Identities=33% Similarity=0.847 Sum_probs=6.2
Q ss_pred CCCCCCCCCCCC
Q 015513 46 TTCPVTKQPLPR 57 (405)
Q Consensus 46 ~~cP~~~~~~~~ 57 (405)
..||+|+.+|+.
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 389999988854
No 434
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=32.21 E-value=13 Score=20.27 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=11.3
Q ss_pred ccCcCCcccCCCccc
Q 015513 10 FICPISLQIMKDPVT 24 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~ 24 (405)
|.|.+|...|.++..
T Consensus 1 ~~C~~C~~~f~s~~~ 15 (25)
T PF12874_consen 1 FYCDICNKSFSSENS 15 (25)
T ss_dssp EEETTTTEEESSHHH
T ss_pred CCCCCCCCCcCCHHH
Confidence 578888888877654
No 435
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.57 E-value=24 Score=26.45 Aligned_cols=12 Identities=17% Similarity=0.783 Sum_probs=11.0
Q ss_pred ccHHHHHHHHhc
Q 015513 31 YDRESIEKWLKT 42 (405)
Q Consensus 31 ~~r~~I~~~~~~ 42 (405)
|||.|+.+|..+
T Consensus 43 FCRNCLs~Wy~e 54 (104)
T COG3492 43 FCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHH
Confidence 999999999865
No 436
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=31.38 E-value=2.7e+02 Score=22.26 Aligned_cols=64 Identities=17% Similarity=0.138 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhcCC---hHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHH
Q 015513 228 DFFKEMVKLLKENIS---QQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLL 295 (405)
Q Consensus 228 g~i~~Lv~lL~~~~~---~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L 295 (405)
..+..+.+++....+ .+..+.+++++......- .-..+.+.+.++.+.++|. ++..++.|+.+|
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~-~~~~i~~~~~l~~~~~~l~---~~~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWI-PIELIINSNLLNLIFQLLQ---SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTT---SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC-CHHHhccHHHHHHHHHHcC---CHHHHHHHHHhC
Confidence 345555666655422 788899999999988743 4455667789999999994 346688887765
No 437
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=31.28 E-value=31 Score=27.06 Aligned_cols=18 Identities=39% Similarity=0.628 Sum_probs=14.3
Q ss_pred cccc---CCCCcccHHHHHHHH
Q 015513 22 PVTA---ITGISYDRESIEKWL 40 (405)
Q Consensus 22 Pv~~---~~g~~~~r~~I~~~~ 40 (405)
||-+ .|+ |.||.||++|-
T Consensus 65 PVFiAQHATa-tCCRgCL~KWH 85 (111)
T PF13811_consen 65 PVFIAQHATA-TCCRGCLEKWH 85 (111)
T ss_pred CeeeecCCCc-cchHHHHHHHh
Confidence 7755 355 89999999995
No 438
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=30.10 E-value=15 Score=23.33 Aligned_cols=25 Identities=12% Similarity=0.217 Sum_probs=13.8
Q ss_pred CCCCcccHHHHHHHHhcCCCCCCCCCCC
Q 015513 26 ITGISYDRESIEKWLKTAKDTTCPVTKQ 53 (405)
Q Consensus 26 ~~g~~~~r~~I~~~~~~~~~~~cP~~~~ 53 (405)
.|||.|+... ... +.....||.|+.
T Consensus 10 ~Cg~~fe~~~--~~~-~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQ--SIS-EDDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEE--EcC-CCCCCcCCCCCC
Confidence 4666665432 111 112457999987
No 439
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.06 E-value=32 Score=31.79 Aligned_cols=28 Identities=11% Similarity=0.274 Sum_probs=20.4
Q ss_pred cccHHHHHHHHhcC-----------CCCCCCCCCCCCCC
Q 015513 30 SYDRESIEKWLKTA-----------KDTTCPVTKQPLPR 57 (405)
Q Consensus 30 ~~~r~~I~~~~~~~-----------~~~~cP~~~~~~~~ 57 (405)
..|++|+.+|+... |.-+||.|++.+.-
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 36789999997421 24579999998754
No 440
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=30.05 E-value=56 Score=34.45 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=38.7
Q ss_pred CcccCcCCcccCCCcccc-CCCCcccHH--HHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 015513 8 QYFICPISLQIMKDPVTA-ITGISYDRE--SIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLI 71 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~-~~g~~~~r~--~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I 71 (405)
--|.|||++.-|.=|+-- .|.|-=|-. ..-+..+....-.||+|.+...- +.++-..-+-..+
T Consensus 305 vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~-e~l~iD~~~~~iL 370 (636)
T KOG2169|consen 305 VSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPF-EGLIIDGYFLNIL 370 (636)
T ss_pred eEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccc-cchhhhHHHHHHH
Confidence 348999999999999844 688654433 33333222223459999887654 5555544444333
No 441
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.75 E-value=1.6e+02 Score=29.74 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhc-CChHHHHHHHHHHHH
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKEN-ISQQATKSGLHVLLQ 255 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~ 255 (405)
++..|.+.+.+ .+..++..|..+|.-+..+.......-+.+.+++..+|.+.+.. .+..+++.++..|..
T Consensus 39 AvralkKRi~~----k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 39 AVRALKKRLNS----KNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHhcc----CCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 66666677776 67788889998888777655443331114779999999999886 788999999998854
No 442
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=29.71 E-value=2.6e+02 Score=24.51 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=33.3
Q ss_pred HhHHHHHHhchHHHHHHHHHhhccCC-----------C---chhHHHHHHHHHhcCCCchhhHHhhcc
Q 015513 124 RNRKSLEEAFVVRALVLFIITSYKGN-----------K---TTGLEEALRILSLVWSPSNENKALVDH 177 (405)
Q Consensus 124 ~~r~~i~~~g~v~~Lv~lL~~~~~~~-----------~---~~~~e~A~~~L~~L~~~~~~~~~~i~~ 177 (405)
.+.+.+.+.|++..++.+|+.+.... + .+....+..+|..++.++.+++..+.+
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~ 101 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK 101 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 34556777899999999998765432 0 122345556666666666666665553
No 443
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=29.38 E-value=30 Score=23.32 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=10.5
Q ss_pred CCCCcccHHHHHHHHhcCCCCCCCCC
Q 015513 26 ITGISYDRESIEKWLKTAKDTTCPVT 51 (405)
Q Consensus 26 ~~g~~~~r~~I~~~~~~~~~~~cP~~ 51 (405)
.|||.|.. .|..... +...||.|
T Consensus 33 ~Cgh~w~~-~v~~R~~--~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKA-SVNDRTR--RGKGCPYC 55 (55)
T ss_pred CCCCeeEc-cHhhhcc--CCCCCCCC
Confidence 35666632 3333221 23567766
No 444
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.30 E-value=24 Score=37.74 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=26.3
Q ss_pred CCcccCcCCccc-CCCcc-ccCCCCcccHHHHHHHHh
Q 015513 7 PQYFICPISLQI-MKDPV-TAITGISYDRESIEKWLK 41 (405)
Q Consensus 7 ~~~~~Cpi~~~~-m~dPv-~~~~g~~~~r~~I~~~~~ 41 (405)
...=+|-+|+.. +..|. +.+|||.|-+.||++...
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 334479999854 34465 559999999999999854
No 445
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=29.20 E-value=3.8e+02 Score=23.17 Aligned_cols=112 Identities=14% Similarity=0.075 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHH
Q 015513 152 TGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFK 231 (405)
Q Consensus 152 ~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~ 231 (405)
..+..|+.++..+... -++--. ..+|.|+.+..+ .+..++..|...+..+....++-.... -..|+.
T Consensus 23 ~vr~~Al~~l~~il~q-----GLvnP~--~cvp~lIAL~ts----~~~~ir~~A~~~l~~l~eK~~s~v~~~--~~~gi~ 89 (187)
T PF12830_consen 23 SVRLAALQVLELILRQ-----GLVNPK--QCVPTLIALETS----PNPSIRSRAYQLLKELHEKHESLVESR--YSEGIR 89 (187)
T ss_pred HHHHHHHHHHHHHHhc-----CCCChH--HHHhHhhhhhCC----CChHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHH
Confidence 3466777766654321 122111 389999999988 899999999999999976554322221 122344
Q ss_pred HHHHHHhh-cCChH--H---HHHHHHHHHHhcc-CCchhHHHHhhcchHHHHHHhhc
Q 015513 232 EMVKLLKE-NISQQ--A---TKSGLHVLLQACP-MGGNRVKITEANAVFELIELELT 281 (405)
Q Consensus 232 ~Lv~lL~~-~~~~~--~---~~~a~~aL~~L~~-~~~n~~~~v~~g~v~~Lv~lL~~ 281 (405)
.-.++-+. ..+.. . ....+..|+.+.. +..+|..++ ..|++.+..
T Consensus 90 ~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl-----~~l~k~f~~ 141 (187)
T PF12830_consen 90 LAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFL-----KSLLKQFDF 141 (187)
T ss_pred HHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHH-----HHHHHHHHh
Confidence 43333322 10111 1 5667778888877 445777764 446666654
No 446
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=28.90 E-value=15 Score=24.91 Aligned_cols=16 Identities=13% Similarity=0.490 Sum_probs=13.0
Q ss_pred CCcccCcCCcccCCCc
Q 015513 7 PQYFICPISLQIMKDP 22 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dP 22 (405)
+..|.||-|+.+|++.
T Consensus 15 E~~lrCPRC~~~FR~~ 30 (65)
T COG4049 15 EEFLRCPRCGMVFRRR 30 (65)
T ss_pred ceeeeCCchhHHHHHh
Confidence 4458999999999885
No 447
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.63 E-value=31 Score=31.84 Aligned_cols=43 Identities=12% Similarity=0.222 Sum_probs=31.0
Q ss_pred CcccCcCCcccCCCcccc--C--CCCcccHHHHHHHHhcC---CCCCCCC
Q 015513 8 QYFICPISLQIMKDPVTA--I--TGISYDRESIEKWLKTA---KDTTCPV 50 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~--~--~g~~~~r~~I~~~~~~~---~~~~cP~ 50 (405)
..++|-+|++-+.|---+ + .+|.||--|=.+.++++ +...||.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 348999999999994333 2 47999988877776653 2345776
No 448
>PRK00420 hypothetical protein; Validated
Probab=28.56 E-value=21 Score=28.28 Aligned_cols=13 Identities=23% Similarity=0.508 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCC
Q 015513 44 KDTTCPVTKQPLP 56 (405)
Q Consensus 44 ~~~~cP~~~~~~~ 56 (405)
|...||.|+..+.
T Consensus 39 g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 39 GEVVCPVHGKVYI 51 (112)
T ss_pred CceECCCCCCeee
Confidence 4567999988653
No 449
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=27.76 E-value=21 Score=27.65 Aligned_cols=45 Identities=24% Similarity=0.319 Sum_probs=15.1
Q ss_pred cCcCCcccC--CCcccc--CCCCcccHHHHHHHH-hcCCCCCCCCCCCCC
Q 015513 11 ICPISLQIM--KDPVTA--ITGISYDRESIEKWL-KTAKDTTCPVTKQPL 55 (405)
Q Consensus 11 ~Cpi~~~~m--~dPv~~--~~g~~~~r~~I~~~~-~~~~~~~cP~~~~~~ 55 (405)
.||+|...+ .|+... +.||+|.|=++.--- ..-+..+||.|+...
T Consensus 16 ~C~~C~~~i~~~~~~~~~C~~GH~w~RC~lT~l~i~~~~~r~C~~C~~~~ 65 (99)
T PF12660_consen 16 KCPICGAPIPFDDLDEAQCENGHVWPRCALTFLPIQTPGVRVCPVCGRRA 65 (99)
T ss_dssp -------------SSEEE-TTS-EEEB-SSS-SBS-SS-EEE-TTT--EE
T ss_pred cccccccccccCCcCEeECCCCCEEeeeeeeeeeeccCCeeEcCCCCCEE
Confidence 699999855 676544 689999774433211 111135699998764
No 450
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=26.91 E-value=4.7e+02 Score=23.52 Aligned_cols=131 Identities=18% Similarity=0.247 Sum_probs=74.9
Q ss_pred cchhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhH
Q 015513 103 DSGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDL 182 (405)
Q Consensus 103 ~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~ 182 (405)
.++..+...+..|-.++..+..+. .=.+..|+.+.... ......-+...+..++..++..- + .
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~----~~~~~~~~~rLl~~lw~~~~r~f------~--~ 75 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQG----SLELRYVALRLLTLLWKANDRHF------P--F 75 (234)
T ss_pred CChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCC----chhHHHHHHHHHHHHHHhCchHH------H--H
Confidence 345777788888888876541211 12233444444322 11112356677777776553211 2 4
Q ss_pred HHHHHHH--Hh---hhc-CCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHH-hhcCChHHHHHHHHHHHH
Q 015513 183 IGALMWV--LQ---WEN-NDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLL-KENISQQATKSGLHVLLQ 255 (405)
Q Consensus 183 i~~Lv~l--L~---~~~-~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL-~~~~~~~~~~~a~~aL~~ 255 (405)
+..++.. ++ +.. .....+.....+..+..++....+ -+ ...++.+-.+| ++. ++.++..++.+|..
T Consensus 76 L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~---~g---~~ll~~ls~~L~~~~-~~~~~alale~l~~ 148 (234)
T PF12530_consen 76 LQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD---HG---VDLLPLLSGCLNQSC-DEVAQALALEALAP 148 (234)
T ss_pred HHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh---hH---HHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 4444433 11 101 012334445556678888876665 22 36788888889 565 77889999999999
Q ss_pred hc
Q 015513 256 AC 257 (405)
Q Consensus 256 L~ 257 (405)
||
T Consensus 149 Lc 150 (234)
T PF12530_consen 149 LC 150 (234)
T ss_pred HH
Confidence 99
No 451
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=26.83 E-value=2.1e+02 Score=20.09 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=27.9
Q ss_pred cChHHHHHHHHhccC-cHHHHHHHHHHHHH-hhcccC
Q 015513 356 VGAVSKLCMVTQADC-EKYLKDRAKEILRL-HSNVWN 390 (405)
Q Consensus 356 ~G~v~~Ll~ll~~~~-~~~~k~~A~~ll~~-l~~~~~ 390 (405)
.|.+..|+.++.... +..+|..|+.+|+. +.++|.
T Consensus 13 p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~ 49 (77)
T PF03810_consen 13 PGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWS 49 (77)
T ss_dssp TCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCc
Confidence 388999999995444 78999999999995 556676
No 452
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=26.76 E-value=75 Score=31.30 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=29.5
Q ss_pred CCcccCcCCcccCCCccccCCCCcccHHHHHHHHhc-CCCCCCCCCCCCCCCCCCCcccHHHH
Q 015513 7 PQYFICPISLQIMKDPVTAITGISYDRESIEKWLKT-AKDTTCPVTKQPLPRDSGLTSNHTLR 68 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~-~~~~~cP~~~~~~~~~~~~~~n~~l~ 68 (405)
+..|.||+|..-|.+- -+.+-+.. .+.+.|-.|+.++-.+..-.|+...+
T Consensus 126 ~~~Y~Cp~C~kkyt~L------------ea~~L~~~~~~~F~C~~C~gelveDe~~~~~~e~~ 176 (436)
T KOG2593|consen 126 VAGYVCPNCQKKYTSL------------EALQLLDNETGEFHCENCGGELVEDENKLPSKESR 176 (436)
T ss_pred cccccCCccccchhhh------------HHHHhhcccCceEEEecCCCchhcccccCchHHHH
Confidence 5668888888755442 22333332 24577888888775545555555444
No 453
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=26.69 E-value=38 Score=25.57 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=18.7
Q ss_pred cccCCCCcccHHHHHHHHhcCCCCCCCCC
Q 015513 23 VTAITGISYDRESIEKWLKTAKDTTCPVT 51 (405)
Q Consensus 23 v~~~~g~~~~r~~I~~~~~~~~~~~cP~~ 51 (405)
|++|.|+.|++..|.+-+.. .||+.
T Consensus 10 VtIp~G~KYdK~wLl~~iq~----~c~v~ 34 (88)
T PF09162_consen 10 VTIPYGKKYDKDWLLNSIQS----HCSVP 34 (88)
T ss_dssp EEETTGGGS-HHHHHHHHHH----HSSS-
T ss_pred EEecCCcccCHHHHHHHHHH----HCCCC
Confidence 78999999999999988754 46543
No 454
>PHA00626 hypothetical protein
Probab=26.57 E-value=47 Score=22.60 Aligned_cols=13 Identities=15% Similarity=0.084 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCCC
Q 015513 45 DTTCPVTKQPLPR 57 (405)
Q Consensus 45 ~~~cP~~~~~~~~ 57 (405)
...||.|+-.++.
T Consensus 23 rYkCkdCGY~ft~ 35 (59)
T PHA00626 23 DYVCCDCGYNDSK 35 (59)
T ss_pred ceEcCCCCCeech
Confidence 3457777666543
No 455
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=26.55 E-value=1.5e+02 Score=28.35 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhccCCchhHHHHhhc--chHHHHHHhhcCC--CCCcHHHHHHHHHHHhcCHhhHHH
Q 015513 246 TKSGLHVLLQACPMGGNRVKITEAN--AVFELIELELTKP--EKSTTELIFNLLAQLCSCADGRLK 307 (405)
Q Consensus 246 ~~~a~~aL~~L~~~~~n~~~~v~~g--~v~~Lv~lL~~~~--~~~~~e~a~~~L~~L~~~~~~~~~ 307 (405)
|-.|+..|..+.........+...+ .+..|++++.... ...++..|+.+|..++........
T Consensus 239 RllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 239 RLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHH
Confidence 3344444444454555666676665 9999999998752 346788888888888864433333
No 456
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=26.46 E-value=47 Score=38.45 Aligned_cols=41 Identities=24% Similarity=0.586 Sum_probs=26.8
Q ss_pred CCCCCcccCcCCc--ccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 4 IEVPQYFICPISL--QIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 4 ~~~~~~~~Cpi~~--~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.++|.++.||-|+ +.+.|. ...|| |+- ....||.|+.++..
T Consensus 903 dPL~phy~C~~C~~~ef~~~~-~~~sG--~Dl----------pdk~Cp~Cg~~~~k 945 (1437)
T PRK00448 903 NPLPPHYVCPNCKYSEFFTDG-SVGSG--FDL----------PDKDCPKCGTKLKK 945 (1437)
T ss_pred CCCCccccCcccccccccccc-ccccc--ccC----------ccccCccccccccc
Confidence 3678899999998 444444 23345 211 24679999988754
No 457
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=26.36 E-value=30 Score=31.82 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=31.3
Q ss_pred ccCcCCcccCCCccccCCCCc------------------ccHHHHHHHHhcC---CCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAITGIS------------------YDRESIEKWLKTA---KDTTCPVTKQPLP 56 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~~g~~------------------~~r~~I~~~~~~~---~~~~cP~~~~~~~ 56 (405)
+.|+||+..|.-|=++. ||. -||+-+....+.. ....|+.|++.|.
T Consensus 188 c~C~iCGKaFSRPWLLQ-GHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFs 254 (279)
T KOG2462|consen 188 CECGICGKAFSRPWLLQ-GHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFA 254 (279)
T ss_pred cccccccccccchHHhh-cccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHH
Confidence 57899999888776654 433 3666666666542 1456999988763
No 458
>PRK04023 DNA polymerase II large subunit; Validated
Probab=26.35 E-value=96 Score=34.16 Aligned_cols=44 Identities=9% Similarity=0.000 Sum_probs=26.7
Q ss_pred ccCcCCcccCCCccccCCCC-----cccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAITGI-----SYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~~g~-----~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
..||-|+....-..--.||. .||..| .+. .+...||.|+.....
T Consensus 627 RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~--~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 627 RKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIE--VEEDECEKCGREPTP 675 (1121)
T ss_pred ccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCc--CCCCcCCCCCCCCCc
Confidence 57888887652221113773 488888 221 124579999988754
No 459
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=26.22 E-value=6.9e+02 Score=25.26 Aligned_cols=83 Identities=16% Similarity=0.132 Sum_probs=49.8
Q ss_pred cHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHH
Q 015513 198 HVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIE 277 (405)
Q Consensus 198 ~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~ 277 (405)
..+.++.|..-|..+..+.+...+-- .....+..+++.|.+..+...++-|++.|..++.+...+-.=-..-+|--+++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq-~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQ-HFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHH-HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 45556667665666555443322221 12356677888888755888999999999999987654322111235555555
Q ss_pred Hhhc
Q 015513 278 LELT 281 (405)
Q Consensus 278 lL~~ 281 (405)
.-.+
T Consensus 379 aa~d 382 (516)
T KOG2956|consen 379 AAKD 382 (516)
T ss_pred HHhC
Confidence 5444
No 460
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=25.88 E-value=8.3 Score=36.25 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=19.8
Q ss_pred ccCcCCcccCCCccccCC---C--CcccHHHHHHHHhcCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAIT---G--ISYDRESIEKWLKTAKDTTCPVTKQPL 55 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~~---g--~~~~r~~I~~~~~~~~~~~cP~~~~~~ 55 (405)
=.||+|+..=.=-++... | |-+|..|=.+|--. ...||.|+..-
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~--R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV--RIKCPYCGNTD 221 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE----TTS-TTT---S
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec--CCCCcCCCCCC
Confidence 499999975444444443 5 45788887888332 45799998753
No 461
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=25.76 E-value=44 Score=22.92 Aligned_cols=13 Identities=23% Similarity=0.583 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCC
Q 015513 45 DTTCPVTKQPLPR 57 (405)
Q Consensus 45 ~~~cP~~~~~~~~ 57 (405)
|.+||+|++.++.
T Consensus 8 H~HC~VCg~aIp~ 20 (64)
T COG4068 8 HRHCVVCGKAIPP 20 (64)
T ss_pred CccccccCCcCCC
Confidence 6789999998865
No 462
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=25.73 E-value=3.6e+02 Score=21.75 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=48.7
Q ss_pred chHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhc-ChHHHHHHHHhc-c------CcHHHHHHHHHHHHHh
Q 015513 314 AIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSV-GAVSKLCMVTQA-D------CEKYLKDRAKEILRLH 385 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~-G~v~~Ll~ll~~-~------~~~~~k~~A~~ll~~l 385 (405)
.+..|.+.|...+.-++-.++.+|..||...+ +..+..+.+. -.|..+..+=.. + ....+|+.|.+++.++
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~-~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN-SDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC-HHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 34556676666666777889999999998765 4466666643 345554444331 1 1457899999999987
Q ss_pred hc
Q 015513 386 SN 387 (405)
Q Consensus 386 ~~ 387 (405)
-.
T Consensus 118 f~ 119 (122)
T cd03572 118 FS 119 (122)
T ss_pred hc
Confidence 54
No 463
>COG1773 Rubredoxin [Energy production and conversion]
Probab=25.57 E-value=35 Score=23.22 Aligned_cols=13 Identities=23% Similarity=0.705 Sum_probs=10.4
Q ss_pred CCCCcccCcCCcc
Q 015513 5 EVPQYFICPISLQ 17 (405)
Q Consensus 5 ~~~~~~~Cpi~~~ 17 (405)
++|++..||.|+-
T Consensus 32 dlPd~w~CP~Cg~ 44 (55)
T COG1773 32 DLPDDWVCPECGV 44 (55)
T ss_pred hCCCccCCCCCCC
Confidence 4788888998874
No 464
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=25.37 E-value=81 Score=28.58 Aligned_cols=32 Identities=9% Similarity=0.100 Sum_probs=20.9
Q ss_pred CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 26 ITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 26 ~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.||+.|.+..+...........||.|+..+.+
T Consensus 121 ~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP 152 (235)
T cd01408 121 KCKHKYPGDWMREDIFNQEVPKCPRCGGLVKP 152 (235)
T ss_pred cCCCcCCHHHHHHHHhCCCCccCCCCCCCccC
Confidence 37788877665555433224679999877754
No 465
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=25.36 E-value=74 Score=32.15 Aligned_cols=65 Identities=11% Similarity=0.158 Sum_probs=38.8
Q ss_pred HHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHH
Q 015513 275 LIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSS 339 (405)
Q Consensus 275 Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~ 339 (405)
+++.+..+.++++++.|..++.+++-+.++|....-+..--..+++.+...-....+.+..++.-
T Consensus 332 ~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~ 396 (763)
T KOG4231|consen 332 ALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAI 396 (763)
T ss_pred HHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHH
Confidence 34444444467899999999999999988888554433333344553333334444444444443
No 466
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=25.33 E-value=53 Score=30.95 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=34.3
Q ss_pred ccCcCCcccCCC----ccccCCCCc-----ccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKD----PVTAITGIS-----YDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 10 ~~Cpi~~~~m~d----Pv~~~~g~~-----~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
..|=||...... |...||..+ .-|.|++.|+...+...|..|...+..
T Consensus 79 ~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 79 PICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 789999875532 566665432 348999999975556789999876643
No 467
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=25.13 E-value=80 Score=24.68 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=30.5
Q ss_pred ccCcCCcccCCCccccC--------C---CCcccHHHHHHHHhcC-------CCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAI--------T---GISYDRESIEKWLKTA-------KDTTCPVTKQP 54 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~--------~---g~~~~r~~I~~~~~~~-------~~~~cP~~~~~ 54 (405)
-+|-.|.+--.|+.+.. | .-.||..|+..+..++ ..-.||.|+.-
T Consensus 8 ~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 8 KTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 36777777666666543 3 4569999999887542 23459998763
No 468
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=25.12 E-value=52 Score=21.98 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=20.0
Q ss_pred CcccCcCCcccCCCc-cccCCCCcccHHHHHH
Q 015513 8 QYFICPISLQIMKDP-VTAITGISYDRESIEK 38 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dP-v~~~~g~~~~r~~I~~ 38 (405)
+-|.|-.|...+.+. .....|.-||+.|..+
T Consensus 25 ~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~ 56 (58)
T PF00412_consen 25 ECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQK 56 (58)
T ss_dssp TTSBETTTTCBTTTSSEEEETTEEEEHHHHHH
T ss_pred cccccCCCCCccCCCeeEeECCEEECHHHHhh
Confidence 346777777777765 3445667777777554
No 469
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=25.04 E-value=21 Score=33.71 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=27.2
Q ss_pred ccCcCCcccCCCcccc----CCC--CcccHHHHHHHHhcCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTA----ITG--ISYDRESIEKWLKTAKDTTCPVTKQP 54 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~----~~g--~~~~r~~I~~~~~~~~~~~cP~~~~~ 54 (405)
=.||+|+..=.--++. ..| |-+|--|=.+|--. ...||.|+..
T Consensus 185 ~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~--R~~C~~Cg~~ 233 (305)
T TIGR01562 185 TLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV--RVKCSHCEES 233 (305)
T ss_pred CcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc--CccCCCCCCC
Confidence 3899999743322232 245 44677787778432 4579999874
No 470
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=24.97 E-value=2.9e+02 Score=28.13 Aligned_cols=60 Identities=7% Similarity=0.068 Sum_probs=47.9
Q ss_pred CcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 015513 197 RHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP 258 (405)
Q Consensus 197 ~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~ 258 (405)
.+++.+..|..++.+++-+.+++.... -+...-..+++++..+ .+++-+.++.|+..+-.
T Consensus 340 ~n~~l~~qa~~~v~~~~~~~~~r~~~~-tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 340 KNPELQRQALLAVGNLAFCLENRRILI-TSPSLRELLMRLIVTP-EPRVNKAAARALAILGE 399 (763)
T ss_pred cChHHHHHHHHHHHHheeccccccccc-CChHHHHHHHHHhccc-ccccchhhhHHHHHhhh
Confidence 789999999999999998888877555 5666777888888876 67777777777766653
No 471
>PF12773 DZR: Double zinc ribbon
Probab=24.91 E-value=79 Score=20.56 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=8.5
Q ss_pred CCCCCCCCCCCCC
Q 015513 45 DTTCPVTKQPLPR 57 (405)
Q Consensus 45 ~~~cP~~~~~~~~ 57 (405)
...||.|+..+..
T Consensus 29 ~~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 29 KKICPNCGAENPP 41 (50)
T ss_pred CCCCcCCcCCCcC
Confidence 3568888776543
No 472
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=24.31 E-value=38 Score=26.21 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=24.1
Q ss_pred CCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 5 EVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
.+|.-|.||-|++ ..=||.+ .| + .++.+||.|+....
T Consensus 17 klpt~f~CP~Cge-~~v~v~~------~k-----~---~~h~~C~~CG~y~~ 53 (99)
T PRK14892 17 KLPKIFECPRCGK-VSISVKI------KK-----N---IAIITCGNCGLYTE 53 (99)
T ss_pred CCCcEeECCCCCC-eEeeeec------CC-----C---cceEECCCCCCccC
Confidence 4678899999995 2333332 22 1 24778999997653
No 473
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=24.17 E-value=1.6e+02 Score=30.33 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=22.8
Q ss_pred hcchHHHHHH-hhcCCCCCcHHHHHHHHHHHhc
Q 015513 269 ANAVFELIEL-ELTKPEKSTTELIFNLLAQLCS 300 (405)
Q Consensus 269 ~g~v~~Lv~l-L~~~~~~~~~e~a~~~L~~L~~ 300 (405)
.|+|..|+.. ++++ +.+++..|+.+|.-.|-
T Consensus 550 ~~vv~~lLh~avsD~-nDDVrRAAViAlGfvc~ 581 (926)
T COG5116 550 LGVVSTLLHYAVSDG-NDDVRRAAVIALGFVCC 581 (926)
T ss_pred chhHhhhheeecccC-chHHHHHHHHheeeeEe
Confidence 4667777777 4444 77889999999988764
No 474
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=23.86 E-value=5.1e+02 Score=24.02 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELAS 217 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~ 217 (405)
.+|.++.++.. .+++.|..++.+|..+...-.
T Consensus 120 iiP~iL~llDD----~~~~~K~~G~~lL~~ll~~~~ 151 (282)
T PF10521_consen 120 IIPPILNLLDD----YSPEIKIQGCQLLHHLLEKVP 151 (282)
T ss_pred HHhhHHHHhcC----CCHHHHHHHHHHHHHHHHhCC
Confidence 68888899997 789999999999999976543
No 475
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=23.65 E-value=64 Score=36.75 Aligned_cols=41 Identities=27% Similarity=0.655 Sum_probs=26.5
Q ss_pred CCCCCcccCcCCc--ccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 4 IEVPQYFICPISL--QIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 4 ~~~~~~~~Cpi~~--~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.+++.++.||-|+ +.+.|. ...|| |+- ....||.|+.++..
T Consensus 678 dPL~phy~c~~c~~~ef~~~~-~~~sg--~dl----------p~k~cp~c~~~~~~ 720 (1213)
T TIGR01405 678 NPLPPHYLCPNCKYSEFITDG-SVGSG--FDL----------PDKDCPKCGAPLKK 720 (1213)
T ss_pred CCCcccccCcccccccccccc-ccccc--ccC----------ccccCccccccccc
Confidence 4678899999998 344444 23344 211 24679999988754
No 476
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=23.61 E-value=6.2e+02 Score=26.99 Aligned_cols=58 Identities=12% Similarity=-0.032 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHHhccC-CchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHh
Q 015513 242 SQQATKSGLHVLLQACPM-GGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLC 299 (405)
Q Consensus 242 ~~~~~~~a~~aL~~L~~~-~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~ 299 (405)
.+..+..++..|..+... +.--..+++...++.|++.|..+.+..+...|+.+|..|-
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 456788999999998875 5567778899999999999987545556667777766654
No 477
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=23.24 E-value=32 Score=19.19 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=9.1
Q ss_pred CcccCcCCcccCC
Q 015513 8 QYFICPISLQIMK 20 (405)
Q Consensus 8 ~~~~Cpi~~~~m~ 20 (405)
..|.||+|..-|.
T Consensus 13 k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 13 KPYKCPYCGKSFS 25 (26)
T ss_dssp SSEEESSSSEEES
T ss_pred CCCCCCCCcCeeC
Confidence 3478888887654
No 478
>PRK01343 zinc-binding protein; Provisional
Probab=23.21 E-value=85 Score=21.57 Aligned_cols=14 Identities=14% Similarity=0.031 Sum_probs=9.6
Q ss_pred cccCcCCcccCCCc
Q 015513 9 YFICPISLQIMKDP 22 (405)
Q Consensus 9 ~~~Cpi~~~~m~dP 22 (405)
...||||+..+..+
T Consensus 9 ~~~CP~C~k~~~~~ 22 (57)
T PRK01343 9 TRPCPECGKPSTRE 22 (57)
T ss_pred CCcCCCCCCcCcCC
Confidence 36788888766544
No 479
>PHA00732 hypothetical protein
Probab=22.85 E-value=1.1e+02 Score=22.54 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=21.2
Q ss_pred ccCcCCcccCCCccccCCCCcccHHHHHHHHhc-CCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAITGISYDRESIEKWLKT-AKDTTCPVTKQPLP 56 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~-~~~~~cP~~~~~~~ 56 (405)
|.|++|+..|..- ..++..... .....|+.|++.+.
T Consensus 2 y~C~~Cgk~F~s~-----------s~Lk~H~r~~H~~~~C~~CgKsF~ 38 (79)
T PHA00732 2 FKCPICGFTTVTL-----------FALKQHARRNHTLTKCPVCNKSYR 38 (79)
T ss_pred ccCCCCCCccCCH-----------HHHHHHhhcccCCCccCCCCCEeC
Confidence 5688887776553 233333321 11347999988774
No 480
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=22.59 E-value=4.1e+02 Score=24.38 Aligned_cols=86 Identities=12% Similarity=0.127 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhc-CChHHHHHHHHHHHHhccCC
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKEN-ISQQATKSGLHVLLQACPMG 260 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~L~~~~ 260 (405)
+.+.++++++. +++. --..++.....+-.+.... +..|-++.|-+++.++ .+.-+|.+|..+|..+....
T Consensus 74 A~~~li~l~~~---~~~~-----~~~l~GD~~tE~l~~ilas-v~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~ 144 (249)
T PF06685_consen 74 ALPPLIRLFSQ---DDDF-----LEDLFGDFITEDLPRILAS-VGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEG 144 (249)
T ss_pred hHHHHHHHHcC---Ccch-----HHHHHcchhHhHHHHHHHH-HhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcC
Confidence 89999999985 1221 1112222222222222222 2346788888888876 35668999999999998854
Q ss_pred -chhHHHHhhcchHHHHHH
Q 015513 261 -GNRVKITEANAVFELIEL 278 (405)
Q Consensus 261 -~n~~~~v~~g~v~~Lv~l 278 (405)
..|..+++ .++.++.-
T Consensus 145 ~~~Re~vi~--~f~~ll~~ 161 (249)
T PF06685_consen 145 PISREEVIQ--YFRELLNY 161 (249)
T ss_pred CCCHHHHHH--HHHHHHHH
Confidence 46777765 34444444
No 481
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=22.26 E-value=76 Score=36.44 Aligned_cols=49 Identities=14% Similarity=0.284 Sum_probs=30.8
Q ss_pred cccCcCCcc--cCCCcc-ccCCCCcccHHHHHHHHhc--CC------CCCCCCCCCCCCC
Q 015513 9 YFICPISLQ--IMKDPV-TAITGISYDRESIEKWLKT--AK------DTTCPVTKQPLPR 57 (405)
Q Consensus 9 ~~~Cpi~~~--~m~dPv-~~~~g~~~~r~~I~~~~~~--~~------~~~cP~~~~~~~~ 57 (405)
+-.|-||.. +=-.|. -+.|||.|--.|....+++ .| -..||+|+.++.+
T Consensus 3486 DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred CceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 346888873 223355 4589999966665554432 12 2359999988754
No 482
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=22.16 E-value=4e+02 Score=23.00 Aligned_cols=68 Identities=10% Similarity=0.102 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCC
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMG 260 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~ 260 (405)
-++.++++..+ .+...+..|+.+|..+..-.=- .=..++|.|+.|..++ ++..+..|...+..+....
T Consensus 9 yl~~Il~~~~~----~~~~vr~~Al~~l~~il~qGLv------nP~~cvp~lIAL~ts~-~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLS----SDDSVRLAALQVLELILRQGLV------NPKQCVPTLIALETSP-NPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhC----CCHHHHHHHHHHHHHHHhcCCC------ChHHHHhHhhhhhCCC-ChHHHHHHHHHHHHHHHHh
Confidence 45555665565 7888999999988877543211 1124689999999887 8999999999999998643
No 483
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=22.16 E-value=8.1e+02 Score=25.46 Aligned_cols=145 Identities=16% Similarity=0.238 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc-------hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc
Q 015513 228 DFFKEMVKLLKENISQQATKSGLHVLLQACPMGG-------NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS 300 (405)
Q Consensus 228 g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~-------n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~ 300 (405)
|-++.||+-++++ +++...+++..|.....+.. +--++..... +-|++....-.+...+..-+.+|+.||.
T Consensus 47 ~dLellVeriqd~-d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~y-~dl~~iydkw~~~n~K~~LaDilS~l~m 124 (881)
T COG5110 47 GDLELLVERIQDP-DIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNY-LDLLEIYDKWLEGNKKRWLADILSALCM 124 (881)
T ss_pred ccHHHHHHHhhCC-ChHHHHHHHHHHHHHHhccccccccCCchhhhcCCCc-chHHHHHhhccCcchhhHHHHHHHHHee
Confidence 6688999999998 89999999999998865432 2123333222 2344444332345667777888999886
Q ss_pred CHhh--HHHHH--hccc-----------chHHHHHHHHcc----------C-hhhhHHHHHHHHHhcccCCCHHHHHHHH
Q 015513 301 CADG--RLKFR--EHAG-----------AIAMVTKRLLRV----------S-PATNDRAVHILSSISKFSATYEVVLEML 354 (405)
Q Consensus 301 ~~~~--~~~i~--~~~g-----------~i~~Lv~~l~~~----------s-~~~~e~a~~~L~~L~~~~~~~~~~~~~~ 354 (405)
...+ +.+.+ .-.| -|..|...+-.. + ....+.+..+.--+-++..+.+.+.-++
T Consensus 125 ~yse~~kh~sL~YRl~g~i~D~~~WGHeYvrhLa~eI~ev~n~~~e~daps~~dt~~l~l~ivpfflkHNaE~dAiDlL~ 204 (881)
T COG5110 125 VYSENGKHKSLAYRLEGNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMDAPSFADTRDLGLEIVPFFLKHNAEFDAIDLLV 204 (881)
T ss_pred ecccccchhhHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhcchhhccCCchhHHHHHHHHHhHHHHhcccchHHHHHHH
Confidence 4332 22111 1011 122333222111 1 2345667777777777777778899999
Q ss_pred hcChHHHHHHHHhccCcHHH
Q 015513 355 SVGAVSKLCMVTQADCEKYL 374 (405)
Q Consensus 355 ~~G~v~~Ll~ll~~~~~~~~ 374 (405)
+.|+|++++.+...++-.++
T Consensus 205 Evg~Iekv~~fVd~~n~~Rv 224 (881)
T COG5110 205 EVGGIEKVLDFVDTHNYNRV 224 (881)
T ss_pred HhcchhhhhhhhcccchhHH
Confidence 99999999999876654443
No 484
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=22.08 E-value=65 Score=19.11 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=19.8
Q ss_pred cCcCCcccCCC--ccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCC
Q 015513 11 ICPISLQIMKD--PVTAITGISYDRESIEKWLKTAKDTTCPVTKQPL 55 (405)
Q Consensus 11 ~Cpi~~~~m~d--Pv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~ 55 (405)
.|+.|.+.+.+ .++..-|..|-.. .+.|..|+.+|
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~----------Cf~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPE----------CFKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEeCCcccccc----------CCCCcccCCcC
Confidence 47788887776 3333334433221 35677777665
No 485
>PHA00733 hypothetical protein
Probab=22.06 E-value=1.9e+02 Score=23.39 Aligned_cols=44 Identities=20% Similarity=0.369 Sum_probs=25.7
Q ss_pred cccCcCCcccCCCccccCCCCcccHHHHHHHHhc--CCCCCCCCCCCCCCC
Q 015513 9 YFICPISLQIMKDPVTAITGISYDRESIEKWLKT--AKDTTCPVTKQPLPR 57 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~--~~~~~cP~~~~~~~~ 57 (405)
...|.||...+.+|..+.. +.| +.++... .....|+.|+..+..
T Consensus 40 ~~~~~~~~~~~~~~~~l~~-~~~----l~~~~~~~~~kPy~C~~Cgk~Fss 85 (128)
T PHA00733 40 RLIRAVVKTLIYNPQLLDE-SSY----LYKLLTSKAVSPYVCPLCLMPFSS 85 (128)
T ss_pred hHHHHHHhhhccChhhhcc-hHH----HHhhcccCCCCCccCCCCCCcCCC
Confidence 4788888888888877653 223 2222211 113467777776643
No 486
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=21.46 E-value=31 Score=28.12 Aligned_cols=10 Identities=30% Similarity=0.620 Sum_probs=7.4
Q ss_pred CCCCCCCCCC
Q 015513 44 KDTTCPVTKQ 53 (405)
Q Consensus 44 ~~~~cP~~~~ 53 (405)
|...||+|+.
T Consensus 43 G~v~CPvC~~ 52 (131)
T COG1645 43 GEVFCPVCGY 52 (131)
T ss_pred CeEECCCCCc
Confidence 4567999984
No 487
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=21.44 E-value=61 Score=27.79 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=23.1
Q ss_pred CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 26 ITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 26 ~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.||+.|...-+...........||.|+..+.+
T Consensus 110 ~C~~~~~~~~~~~~~~~~~~~~C~~C~~~lrp 141 (178)
T PF02146_consen 110 KCGKEYDREDIVDSIDEEEPPRCPKCGGLLRP 141 (178)
T ss_dssp TTSBEEEGHHHHHHHHTTSSCBCTTTSCBEEE
T ss_pred CCCccccchhhcccccccccccccccCccCCC
Confidence 58888888777766554435689999987643
No 488
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.03 E-value=78 Score=27.07 Aligned_cols=31 Identities=19% Similarity=0.626 Sum_probs=23.1
Q ss_pred cCCCCcccHHHHHHHHhc----CCC-----CCCCCCCCCC
Q 015513 25 AITGISYDRESIEKWLKT----AKD-----TTCPVTKQPL 55 (405)
Q Consensus 25 ~~~g~~~~r~~I~~~~~~----~~~-----~~cP~~~~~~ 55 (405)
+.||..|-+-|+.+|+.. .+. ..||-|..++
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI 227 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence 479999999999999852 111 3599997665
No 489
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=20.95 E-value=1.4e+02 Score=20.55 Aligned_cols=29 Identities=28% Similarity=0.255 Sum_probs=21.3
Q ss_pred HHHHhccCCchhHHHHhhcchHHHHHHhh
Q 015513 252 VLLQACPMGGNRVKITEANAVFELIELEL 280 (405)
Q Consensus 252 aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~ 280 (405)
+|.-||.....|..+-+.|+-+.|=++=.
T Consensus 1 ~LllL~~T~~GR~~lR~~~vY~IlRe~h~ 29 (58)
T PF04064_consen 1 ALLLLCATREGREYLREKGVYPILRELHK 29 (58)
T ss_pred CHhHHhccHHHHHHHHHcCchHHHHHHHh
Confidence 36778888889988888877665555443
No 490
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=20.84 E-value=1e+02 Score=30.06 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=27.7
Q ss_pred CCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 6 VPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.++-..||-|.-.+.=| .++.||+ -.||.|++.+..
T Consensus 15 ~~~~~~C~eCd~~~~~P-~l~~~q~---------------A~CPRC~~~l~~ 50 (418)
T COG2995 15 PGHLILCPECDMLVSLP-RLDSGQS---------------AYCPRCGHTLTR 50 (418)
T ss_pred ccceecCCCCCceeccc-cCCCCCc---------------ccCCCCCCcccc
Confidence 44557999999999888 6665543 479999998864
No 491
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=20.82 E-value=81 Score=33.67 Aligned_cols=48 Identities=21% Similarity=0.403 Sum_probs=35.9
Q ss_pred CcccCcCCc--ccCCCccccCCCCc-----ccHHHHHHHHhcCCCCCCCCCCCCC
Q 015513 8 QYFICPISL--QIMKDPVTAITGIS-----YDRESIEKWLKTAKDTTCPVTKQPL 55 (405)
Q Consensus 8 ~~~~Cpi~~--~~m~dPv~~~~g~~-----~~r~~I~~~~~~~~~~~cP~~~~~~ 55 (405)
++-+|-||. +.=.||.--||..+ --|+|+-+|..-.+...|-.|+.++
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 347899997 45566876677655 3588999999865567899998764
No 492
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=20.67 E-value=38 Score=21.39 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=11.9
Q ss_pred cCcCCcccCCCccc-cCC----CCcccHHH
Q 015513 11 ICPISLQIMKDPVT-AIT----GISYDRES 35 (405)
Q Consensus 11 ~Cpi~~~~m~dPv~-~~~----g~~~~r~~ 35 (405)
-||+|+- +|=.- .+. |+-||+.|
T Consensus 5 pCP~CGG--~DrFri~~d~~~~G~~~C~~C 32 (40)
T PF08273_consen 5 PCPICGG--KDRFRIFDDKDGRGTWICRQC 32 (40)
T ss_dssp --TTTT---TTTEEEETT----S-EEETTT
T ss_pred CCCCCcC--ccccccCcCcccCCCEECCCC
Confidence 4899986 44433 233 77787776
No 493
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=20.51 E-value=4.5e+02 Score=22.11 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHH
Q 015513 228 DFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLK 307 (405)
Q Consensus 228 g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~ 307 (405)
.-...|+.+|+.+ ...-.+..+..|.+=..-.-.-..-|+++.+..++.-=.. .+.-.+..|+..|+.+-+
T Consensus 22 ~Qt~~lielLk~~-~~~~~~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~-~~~Is~~~Av~LLGtM~G------- 92 (154)
T PF11791_consen 22 EQTAELIELLKNP-PAGEEAFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEIS-SPLISPAEAVELLGTMLG------- 92 (154)
T ss_dssp HHHHHHHHHHHS---TT-HHHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS--BTTB-HHHHHHHHTTS-S-------
T ss_pred HHHHHHHHHHhCC-CCccHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCcc-CCCcCHHHHHHHHhhccC-------
Confidence 3445577777765 2222333344443333221122233555544444332111 122346677777766532
Q ss_pred HHhcccchHHHHHHHHccChhhhHHHHHHHHHh
Q 015513 308 FREHAGAIAMVTKRLLRVSPATNDRAVHILSSI 340 (405)
Q Consensus 308 i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L 340 (405)
+--|.+||++|........+.|+.+|.+.
T Consensus 93 ----GYNV~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 93 ----GYNVQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp ----STTHHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred ----CCcHHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 23578999955434456667777777653
No 494
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=20.45 E-value=1e+03 Score=25.77 Aligned_cols=123 Identities=14% Similarity=0.054 Sum_probs=71.3
Q ss_pred hchHHHHHHHHHhhcc-CCC---chhHHHHHHHHHhcCC--Cch-hhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHH
Q 015513 132 AFVVRALVLFIITSYK-GNK---TTGLEEALRILSLVWS--PSN-ENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTS 204 (405)
Q Consensus 132 ~g~v~~Lv~lL~~~~~-~~~---~~~~e~A~~~L~~L~~--~~~-~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~ 204 (405)
.|.++.+++.|..... ..+ ....|-|+..+.++.. ..+ .....+ +.= .++.++-.+++ ...-.+.+
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~m-e~f--iv~hv~P~f~s----~ygfL~Sr 479 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVM-EYF--IVNHVIPAFRS----NYGFLKSR 479 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHH-HHH--HHHHhhHhhcC----cccchHHH
Confidence 4889999999943221 111 1223556666665532 111 111111 111 33444445565 56667889
Q ss_pred HHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHH
Q 015513 205 AMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKI 266 (405)
Q Consensus 205 A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~ 266 (405)
|+..+..++.+=..... ...+.+.....+++. +..++-.|+-||.-+-.+.+...++
T Consensus 480 ace~is~~eeDfkd~~i----ll~aye~t~ncl~nn-~lpv~ieAalAlq~fi~~~q~h~k~ 536 (970)
T COG5656 480 ACEFISTIEEDFKDNGI----LLEAYENTHNCLKNN-HLPVMIEAALALQFFIFNEQSHEKF 536 (970)
T ss_pred HHHHHHHHHHhcccchH----HHHHHHHHHHHHhcC-CcchhhhHHHHHHHHHhchhhhHHH
Confidence 99999888433222221 236677778888886 7788888888888888776554444
No 495
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=20.32 E-value=33 Score=22.94 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=6.8
Q ss_pred ccCcCCcccCCCc
Q 015513 10 FICPISLQIMKDP 22 (405)
Q Consensus 10 ~~Cpi~~~~m~dP 22 (405)
-+||+|..+++.+
T Consensus 25 atCP~C~a~~~~s 37 (54)
T PF09237_consen 25 ATCPICGAVIRQS 37 (54)
T ss_dssp EE-TTT--EESSH
T ss_pred CCCCcchhhccch
Confidence 4788888776654
No 496
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=20.26 E-value=1.9e+02 Score=22.85 Aligned_cols=39 Identities=8% Similarity=0.060 Sum_probs=30.5
Q ss_pred chHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHh
Q 015513 271 AVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFRE 310 (405)
Q Consensus 271 ~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~ 310 (405)
+|+.|+.-|.+. +.++...|+.+|...|...+.-..++.
T Consensus 9 ~i~lLv~QL~D~-~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDP-SPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 578888888875 778999999999999987755555443
No 497
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=20.05 E-value=4.7e+02 Score=21.06 Aligned_cols=48 Identities=21% Similarity=0.383 Sum_probs=31.7
Q ss_pred HHHHHHHHhc--chhHHHHHHHHHHHHHHh-hHHhHHHHHH-hchHHHHHHH
Q 015513 94 QVRKLVRDLD--SGHLRISTLKKMEALAME-NERNRKSLEE-AFVVRALVLF 141 (405)
Q Consensus 94 ~i~~lv~~l~--~~~~~~~Al~~L~~l~~~-~~~~r~~i~~-~g~v~~Lv~l 141 (405)
-+..|.+.|. ++.++.++|+.|..++.. ++..+..+.+ ...|..+..+
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f 90 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANY 90 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHc
Confidence 3455667773 468899999999988875 4455666665 4555554444
Done!