Query 015513
Match_columns 405
No_of_seqs 310 out of 2118
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 13:56:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 2.6E-32 9E-37 262.2 25.1 271 106-388 47-335 (354)
2 3nmz_A APC variant protein; pr 100.0 4.8E-31 1.6E-35 260.9 22.7 268 109-388 166-451 (458)
3 3nmz_A APC variant protein; pr 100.0 1.6E-28 5.6E-33 242.8 25.8 277 105-387 96-408 (458)
4 1xm9_A Plakophilin 1; armadill 100.0 1.7E-28 5.7E-33 244.9 21.4 280 94-388 3-361 (457)
5 3l6x_A Catenin delta-1; cateni 100.0 1.1E-27 3.6E-32 242.2 24.9 287 91-390 46-387 (584)
6 3nmw_A APC variant protein; AR 100.0 2.3E-28 7.8E-33 234.8 16.1 244 92-347 72-339 (354)
7 1xm9_A Plakophilin 1; armadill 100.0 3.9E-27 1.3E-31 235.0 21.7 283 91-388 42-450 (457)
8 3now_A UNC-45 protein, SD10334 100.0 1.2E-26 4E-31 242.1 25.3 281 92-387 420-737 (810)
9 3l6x_A Catenin delta-1; cateni 99.9 3.7E-26 1.3E-30 231.0 25.4 284 92-388 89-477 (584)
10 3ul1_B Importin subunit alpha- 99.9 1.2E-26 4E-31 234.8 21.1 285 91-387 98-387 (510)
11 3ul1_B Importin subunit alpha- 99.9 1.2E-26 4.1E-31 234.7 20.9 280 94-387 58-345 (510)
12 3tpo_A Importin subunit alpha- 99.9 4.4E-26 1.5E-30 231.6 22.5 285 91-387 117-406 (529)
13 3now_A UNC-45 protein, SD10334 99.9 3.9E-26 1.3E-30 238.1 20.1 279 93-388 495-783 (810)
14 3tpo_A Importin subunit alpha- 99.9 9.1E-26 3.1E-30 229.3 21.9 285 92-387 161-449 (529)
15 4b8j_A Importin subunit alpha- 99.9 2E-24 6.7E-29 219.2 23.1 282 92-387 73-358 (528)
16 4hxt_A De novo protein OR329; 99.9 1.9E-24 6.5E-29 197.1 20.5 242 133-392 2-246 (252)
17 4db8_A Armadillo-repeat protei 99.9 1.3E-24 4.6E-29 198.8 18.3 236 93-342 12-251 (252)
18 4hxt_A De novo protein OR329; 99.9 6E-24 2.1E-28 193.8 21.1 237 94-345 3-244 (252)
19 4b8j_A Importin subunit alpha- 99.9 1.5E-23 5E-28 212.7 25.6 280 92-388 116-401 (528)
20 4db8_A Armadillo-repeat protei 99.9 3.9E-24 1.3E-28 195.7 16.0 237 133-387 12-251 (252)
21 3tt9_A Plakophilin-2; cell adh 99.9 6E-24 2.1E-28 191.1 14.7 197 93-301 8-230 (233)
22 3tt9_A Plakophilin-2; cell adh 99.9 2.8E-24 9.7E-29 193.3 12.3 199 134-343 9-230 (233)
23 1wa5_B Importin alpha subunit; 99.9 5.3E-23 1.8E-27 208.8 22.6 279 92-388 129-413 (530)
24 1jdh_A Beta-catenin; beta-cate 99.9 1.2E-22 4.1E-27 205.4 24.8 282 92-387 58-385 (529)
25 2jdq_A Importin alpha-1 subuni 99.9 2.6E-22 8.9E-27 198.7 26.5 279 93-387 64-347 (450)
26 1wa5_B Importin alpha subunit; 99.9 1.1E-22 3.8E-27 206.5 22.6 278 93-387 87-370 (530)
27 2z6h_A Catenin beta-1, beta-ca 99.9 1.5E-22 5.1E-27 210.4 23.3 283 92-388 55-383 (644)
28 1jdh_A Beta-catenin; beta-cate 99.9 9E-22 3.1E-26 199.0 25.3 282 91-388 15-340 (529)
29 2z6h_A Catenin beta-1, beta-ca 99.9 1.3E-21 4.4E-26 203.3 25.6 281 91-387 12-336 (644)
30 2jdq_A Importin alpha-1 subuni 99.9 1.6E-21 5.3E-26 193.1 25.0 281 92-388 106-391 (450)
31 2kr4_A Ubiquitin conjugation f 99.9 4E-23 1.4E-27 156.2 6.2 75 4-81 9-83 (85)
32 2z6g_A B-catenin; FULL-length, 99.9 9.6E-21 3.3E-25 200.5 26.4 281 93-387 192-518 (780)
33 2kre_A Ubiquitin conjugation f 99.9 8.9E-23 3E-27 158.8 7.1 75 4-81 24-98 (100)
34 4db6_A Armadillo repeat protei 99.9 1.9E-21 6.5E-26 172.8 16.2 194 94-300 13-209 (210)
35 1wgm_A Ubiquitin conjugation f 99.9 1.5E-22 5.2E-27 156.9 7.7 76 4-82 17-93 (98)
36 4db6_A Armadillo repeat protei 99.9 3.2E-21 1.1E-25 171.4 16.9 194 182-387 13-209 (210)
37 2z6g_A B-catenin; FULL-length, 99.9 2.9E-20 9.8E-25 196.9 23.5 280 92-387 149-472 (780)
38 1xqr_A HSPBP1 protein; armadil 99.9 2.6E-20 9E-25 174.2 19.4 183 106-301 55-239 (296)
39 2f42_A STIP1 homology and U-bo 99.8 1.4E-21 4.7E-26 166.7 6.8 76 3-80 100-175 (179)
40 3opb_A SWI5-dependent HO expre 99.8 5.7E-20 2E-24 188.6 16.1 251 125-389 449-730 (778)
41 1t1h_A Gspef-atpub14, armadill 99.8 7.6E-21 2.6E-25 141.8 6.8 76 3-80 2-77 (78)
42 1xqr_A HSPBP1 protein; armadil 99.8 2.7E-19 9.3E-24 167.3 18.1 181 153-343 56-239 (296)
43 2yu4_A E3 SUMO-protein ligase 99.8 5.8E-20 2E-24 141.7 5.3 75 5-80 3-85 (94)
44 3opb_A SWI5-dependent HO expre 99.8 1.1E-17 3.9E-22 171.7 21.4 281 92-387 295-635 (778)
45 2c2l_A CHIP, carboxy terminus 99.8 2E-19 6.9E-24 167.6 6.5 76 3-80 202-277 (281)
46 3ztg_A E3 ubiquitin-protein li 99.7 3.4E-18 1.2E-22 131.6 8.2 79 3-81 7-86 (92)
47 2bay_A PRE-mRNA splicing facto 99.6 3.6E-17 1.2E-21 114.7 2.1 55 9-66 3-58 (61)
48 3fl2_A E3 ubiquitin-protein li 99.6 3.8E-16 1.3E-20 127.0 5.2 70 7-77 50-119 (124)
49 3htk_C E3 SUMO-protein ligase 99.6 1.6E-16 5.5E-21 141.6 3.2 71 6-77 178-251 (267)
50 3grl_A General vesicular trans 99.6 8.6E-14 2.9E-18 139.6 20.6 283 87-384 15-339 (651)
51 3m62_A Ubiquitin conjugation f 99.6 9.6E-16 3.3E-20 159.1 6.3 75 3-80 885-960 (968)
52 1z6u_A NP95-like ring finger p 99.6 1.6E-15 5.4E-20 127.1 5.2 71 6-77 75-145 (150)
53 2yur_A Retinoblastoma-binding 99.5 5.5E-15 1.9E-19 108.5 5.8 61 4-64 10-71 (74)
54 2y43_A E3 ubiquitin-protein li 99.5 3.3E-15 1.1E-19 116.4 4.1 69 7-78 20-89 (99)
55 2egp_A Tripartite motif-contai 99.5 8.6E-16 2.9E-20 114.5 -1.4 66 4-70 7-77 (79)
56 2ckl_A Polycomb group ring fin 99.5 1.4E-14 4.8E-19 114.7 4.8 68 6-76 12-84 (108)
57 2ecw_A Tripartite motif-contai 99.5 6.1E-15 2.1E-19 111.4 2.3 65 5-70 15-83 (85)
58 3lrq_A E3 ubiquitin-protein li 99.5 1.5E-14 5.2E-19 112.7 4.5 71 6-78 19-90 (100)
59 2ecv_A Tripartite motif-contai 99.5 8.1E-15 2.8E-19 110.7 2.0 65 5-70 15-83 (85)
60 2csy_A Zinc finger protein 183 99.5 2.5E-14 8.7E-19 106.9 4.2 64 4-71 10-73 (81)
61 1jm7_B BARD1, BRCA1-associated 99.5 1.3E-14 4.5E-19 116.5 2.6 68 6-78 19-87 (117)
62 2ckl_B Ubiquitin ligase protei 99.5 3.1E-14 1E-18 121.6 4.3 70 6-76 51-121 (165)
63 3hct_A TNF receptor-associated 99.4 3.3E-14 1.1E-18 114.4 4.1 69 5-75 14-82 (118)
64 2djb_A Polycomb group ring fin 99.4 1E-13 3.6E-18 101.1 6.4 58 4-64 10-68 (72)
65 2ecy_A TNF receptor-associated 99.4 1.2E-13 4E-18 99.0 5.9 52 5-57 11-62 (66)
66 4ayc_A E3 ubiquitin-protein li 99.4 5.9E-14 2E-18 116.1 4.7 64 7-75 51-114 (138)
67 1jm7_A BRCA1, breast cancer ty 99.4 7.4E-14 2.5E-18 111.2 5.0 69 7-76 19-88 (112)
68 3l11_A E3 ubiquitin-protein li 99.4 2.5E-14 8.7E-19 114.5 1.7 70 5-75 11-86 (115)
69 3grl_A General vesicular trans 99.4 9.2E-12 3.2E-16 125.0 19.8 283 91-387 58-394 (651)
70 2ysl_A Tripartite motif-contai 99.4 3.6E-13 1.2E-17 98.5 5.2 53 5-57 16-69 (73)
71 2ysj_A Tripartite motif-contai 99.4 6.9E-13 2.4E-17 94.0 5.2 47 5-51 16-63 (63)
72 1rmd_A RAG1; V(D)J recombinati 99.3 2.9E-13 9.8E-18 108.5 3.4 67 6-74 20-87 (116)
73 1g25_A CDK-activating kinase a 99.3 5.9E-13 2E-17 95.0 4.3 55 8-64 2-61 (65)
74 3hcs_A TNF receptor-associated 99.3 5.6E-13 1.9E-17 114.3 4.1 68 5-74 14-81 (170)
75 3knv_A TNF receptor-associated 99.3 2E-13 6.8E-18 112.9 0.1 69 5-74 27-103 (141)
76 3ng2_A RNF4, snurf, ring finge 99.3 1.2E-12 3.9E-17 95.2 3.3 58 4-64 5-69 (71)
77 2ecj_A Tripartite motif-contai 99.3 3E-12 1E-16 89.0 5.3 47 5-51 11-58 (58)
78 2ct2_A Tripartite motif protei 99.3 5.9E-12 2E-16 95.5 6.2 54 4-57 10-68 (88)
79 2d8t_A Dactylidin, ring finger 99.3 2.1E-12 7.3E-17 93.7 3.4 51 5-57 11-61 (71)
80 1e4u_A Transcriptional repress 99.2 1.9E-11 6.3E-16 90.0 6.0 53 4-57 6-62 (78)
81 2ea6_A Ring finger protein 4; 99.2 7.9E-12 2.7E-16 90.1 3.8 50 5-56 11-67 (69)
82 2xeu_A Ring finger protein 4; 99.2 4.7E-12 1.6E-16 89.8 2.2 54 8-64 2-62 (64)
83 2ect_A Ring finger protein 126 99.2 2.3E-11 7.8E-16 90.0 4.8 57 5-64 11-70 (78)
84 3ltm_A Alpha-REP4; protein eng 99.1 6.3E-09 2.1E-13 91.8 18.7 191 132-392 18-208 (211)
85 1chc_A Equine herpes virus-1 r 99.1 8.2E-11 2.8E-15 84.5 4.1 49 7-57 3-52 (68)
86 1bor_A Transcription factor PM 99.1 3.1E-11 1.1E-15 83.1 1.6 46 7-57 4-49 (56)
87 2ecm_A Ring finger and CHY zin 99.0 1.4E-10 4.7E-15 79.5 3.9 47 8-56 4-54 (55)
88 1iym_A EL5; ring-H2 finger, ub 99.0 1.3E-10 4.4E-15 79.7 3.5 48 6-55 2-53 (55)
89 4ap4_A E3 ubiquitin ligase RNF 99.0 8.2E-11 2.8E-15 96.3 2.8 54 7-63 5-65 (133)
90 2ep4_A Ring finger protein 24; 99.0 3.7E-10 1.3E-14 82.4 5.8 51 5-57 11-64 (74)
91 2ecn_A Ring finger protein 141 99.0 4.8E-11 1.6E-15 86.2 0.9 50 5-57 11-60 (70)
92 2kiz_A E3 ubiquitin-protein li 99.0 3E-10 1E-14 81.7 5.0 51 5-57 10-63 (69)
93 1oyz_A Hypothetical protein YI 99.0 4.8E-08 1.6E-12 90.0 21.0 223 94-386 24-249 (280)
94 2l0b_A E3 ubiquitin-protein li 99.0 2.2E-10 7.7E-15 87.2 3.9 50 6-57 37-89 (91)
95 3ltj_A Alpharep-4; protein eng 99.0 5.6E-08 1.9E-12 84.9 19.4 187 88-341 9-197 (201)
96 3ltm_A Alpha-REP4; protein eng 99.0 3.4E-08 1.1E-12 87.0 18.0 188 91-345 17-206 (211)
97 3ltj_A Alpharep-4; protein eng 99.0 4.9E-08 1.7E-12 85.2 18.7 186 132-387 13-198 (201)
98 1x4j_A Ring finger protein 38; 98.9 3.5E-10 1.2E-14 82.8 3.4 49 7-57 21-72 (75)
99 1v87_A Deltex protein 2; ring- 98.9 7.9E-10 2.7E-14 88.0 5.3 52 6-57 22-94 (114)
100 4ic3_A E3 ubiquitin-protein li 98.9 2.8E-10 9.7E-15 83.0 1.6 45 7-57 22-67 (74)
101 4gmo_A Putative uncharacterize 98.9 6.8E-09 2.3E-13 108.1 10.5 194 182-386 35-257 (684)
102 1oyz_A Hypothetical protein YI 98.8 1.7E-07 5.9E-12 86.2 18.7 223 92-383 53-278 (280)
103 2y1n_A E3 ubiquitin-protein li 98.8 2.2E-09 7.6E-14 101.9 4.6 48 9-57 332-379 (389)
104 2ecg_A Baculoviral IAP repeat- 98.8 2.2E-09 7.6E-14 78.5 3.1 45 7-57 23-68 (75)
105 1wim_A KIAA0161 protein; ring 98.8 1.1E-09 3.6E-14 84.0 1.4 68 7-76 3-83 (94)
106 4gmo_A Putative uncharacterize 98.8 9.7E-08 3.3E-12 99.4 15.4 198 92-299 33-257 (684)
107 4ap4_A E3 ubiquitin ligase RNF 98.8 1.6E-09 5.6E-14 88.5 1.4 55 7-64 70-131 (133)
108 4fdd_A Transportin-1; heat rep 98.7 9.3E-07 3.2E-11 94.3 22.6 274 93-388 128-430 (852)
109 2vje_A E3 ubiquitin-protein li 98.7 6E-09 2.1E-13 73.5 3.6 51 4-56 3-56 (64)
110 2ecl_A Ring-box protein 2; RNF 98.7 9.2E-09 3.1E-13 76.3 3.6 47 8-56 14-75 (81)
111 2vje_B MDM4 protein; proto-onc 98.6 1.3E-08 4.6E-13 71.5 3.1 47 8-56 6-55 (63)
112 4fdd_A Transportin-1; heat rep 98.6 1.8E-06 6.1E-11 92.1 19.0 272 96-386 218-511 (852)
113 2yho_A E3 ubiquitin-protein li 98.6 1.2E-08 4E-13 75.3 1.0 45 7-57 16-61 (79)
114 3dpl_R Ring-box protein 1; ubi 98.5 6.2E-08 2.1E-12 75.4 4.4 46 9-56 37-100 (106)
115 1b3u_A Protein (protein phosph 98.5 3.8E-06 1.3E-10 85.1 18.0 254 106-389 296-550 (588)
116 1ibr_B P95, importin beta-1 su 98.5 4.5E-06 1.5E-10 81.8 17.7 279 93-390 128-440 (462)
117 2d8s_A Cellular modulator of i 98.4 2E-07 6.8E-12 68.6 5.1 52 6-57 12-70 (80)
118 1b3u_A Protein (protein phosph 98.4 1.1E-05 3.6E-10 81.7 19.2 252 105-386 101-352 (588)
119 2ea5_A Cell growth regulator w 98.4 3E-07 1E-11 65.5 4.8 45 7-57 13-58 (68)
120 2vgl_B AP-2 complex subunit be 98.3 2E-05 6.9E-10 80.5 18.0 186 134-342 122-311 (591)
121 2vgl_B AP-2 complex subunit be 98.2 4.8E-05 1.7E-09 77.7 18.3 260 93-388 49-312 (591)
122 4a0k_B E3 ubiquitin-protein li 98.2 2.2E-07 7.6E-12 73.4 0.0 45 10-56 49-111 (117)
123 2qk2_A LP04448P; mini spindles 98.1 4.1E-05 1.4E-09 68.7 13.1 187 185-390 19-208 (242)
124 1qgr_A Protein (importin beta 98.0 0.0013 4.6E-08 69.6 24.6 276 94-389 129-439 (876)
125 3b2a_A TON_1937, putative unch 97.9 0.00038 1.3E-08 60.9 15.7 228 133-388 33-262 (265)
126 2bpt_A Importin beta-1 subunit 97.9 0.0008 2.7E-08 71.2 21.8 277 95-389 500-813 (861)
127 1w63_A Adapter-related protein 97.9 0.00058 2E-08 70.0 20.0 244 105-388 156-415 (618)
128 1qgr_A Protein (importin beta 97.9 0.00048 1.6E-08 73.1 19.8 258 106-388 343-680 (876)
129 1u6g_C TIP120 protein, CAND1; 97.9 5.5E-05 1.9E-09 83.8 12.7 273 93-390 6-287 (1230)
130 3b2a_A TON_1937, putative unch 97.9 0.00013 4.6E-09 63.8 11.8 210 64-302 9-220 (265)
131 2bpt_A Importin beta-1 subunit 97.9 0.00063 2.2E-08 72.0 19.6 271 97-389 415-713 (861)
132 1w63_A Adapter-related protein 97.9 0.0015 5.1E-08 67.0 21.7 181 106-323 49-229 (618)
133 1u6g_C TIP120 protein, CAND1; 97.8 0.00098 3.3E-08 73.8 20.1 231 93-346 48-288 (1230)
134 1ibr_B P95, importin beta-1 su 97.8 0.00066 2.3E-08 66.2 16.5 270 95-388 3-289 (462)
135 2db0_A 253AA long hypothetical 97.7 0.01 3.4E-07 50.1 20.0 214 91-341 30-245 (253)
136 2qk2_A LP04448P; mini spindles 97.7 0.00038 1.3E-08 62.2 12.2 180 98-300 20-205 (242)
137 1te4_A Conserved protein MTH18 97.7 9.4E-05 3.2E-09 59.6 7.1 120 132-297 11-130 (131)
138 2ct0_A Non-SMC element 1 homol 97.7 4.3E-05 1.5E-09 54.9 4.3 47 10-56 16-63 (74)
139 1te4_A Conserved protein MTH18 97.6 6E-06 2E-10 66.8 -0.5 117 182-338 13-129 (131)
140 3dad_A FH1/FH2 domain-containi 97.6 0.0023 7.9E-08 59.3 15.9 186 184-377 121-326 (339)
141 2qk1_A Protein STU2; STU2P, XM 97.6 0.00064 2.2E-08 61.3 12.1 195 186-391 21-224 (249)
142 3dad_A FH1/FH2 domain-containi 97.5 0.0023 8E-08 59.3 14.3 154 94-258 119-286 (339)
143 1vyx_A ORF K3, K3RING; zinc-bi 97.5 0.00011 3.9E-09 50.5 4.2 49 8-56 5-58 (60)
144 2qk1_A Protein STU2; STU2P, XM 97.4 0.0013 4.4E-08 59.3 11.8 184 151-345 30-223 (249)
145 3vk6_A E3 ubiquitin-protein li 97.4 0.00011 3.9E-09 54.9 3.8 45 11-56 3-48 (101)
146 2iw3_A Elongation factor 3A; a 97.0 0.073 2.5E-06 56.8 21.9 266 94-389 55-326 (986)
147 2vgl_A Adaptor protein complex 97.0 0.097 3.3E-06 53.5 22.4 207 104-341 200-432 (621)
148 2iw3_A Elongation factor 3A; a 96.9 0.057 1.9E-06 57.6 19.8 260 96-390 17-283 (986)
149 1ho8_A Vacuolar ATP synthase s 96.8 0.12 4.3E-06 50.2 19.5 226 154-385 185-474 (480)
150 2jun_A Midline-1; B-BOX, TRIM, 96.6 0.00079 2.7E-08 51.6 2.2 34 8-41 2-38 (101)
151 2vgl_A Adaptor protein complex 96.6 0.26 8.9E-06 50.3 21.6 143 97-259 115-271 (621)
152 3k1l_B Fancl; UBC, ring, RWD, 96.6 0.00037 1.3E-08 64.3 0.0 47 10-56 309-372 (381)
153 3i2d_A E3 SUMO-protein ligase 96.5 0.0021 7.1E-08 60.3 4.6 63 10-73 250-315 (371)
154 4ady_A RPN2, 26S proteasome re 96.4 0.22 7.5E-06 52.7 19.4 173 182-392 508-681 (963)
155 1ho8_A Vacuolar ATP synthase s 96.3 0.62 2.1E-05 45.3 20.7 251 132-399 76-362 (480)
156 2fv2_A RCD1 required for cell 96.2 0.12 4E-06 45.9 13.6 213 93-309 3-233 (268)
157 4ady_A RPN2, 26S proteasome re 96.0 0.42 1.4E-05 50.6 19.5 138 182-345 542-679 (963)
158 4fo9_A E3 SUMO-protein ligase 96.0 0.0055 1.9E-07 57.3 4.5 64 9-73 215-281 (360)
159 1wa5_C Importin alpha RE-expor 95.8 0.25 8.6E-06 53.0 17.5 223 152-388 420-671 (960)
160 3tjz_B Coatomer subunit gamma; 95.3 0.33 1.1E-05 45.7 14.0 136 136-301 71-206 (355)
161 2fv2_A RCD1 required for cell 95.1 0.38 1.3E-05 42.7 12.9 155 106-268 71-234 (268)
162 3oc3_A Helicase MOT1, MOT1; re 94.9 1 3.6E-05 44.6 16.2 246 95-383 176-432 (800)
163 3nw0_A Non-structural maintena 94.8 0.022 7.7E-07 50.6 4.3 48 10-57 181-229 (238)
164 3ebb_A Phospholipase A2-activa 94.8 1.3 4.3E-05 40.8 16.2 157 106-269 117-274 (304)
165 4ffb_C Protein STU2; tubulin f 94.3 0.24 8.2E-06 44.8 10.1 184 99-301 15-213 (278)
166 3ebb_A Phospholipase A2-activa 92.8 1.1 3.8E-05 41.1 11.8 179 134-323 104-285 (304)
167 3tjz_B Coatomer subunit gamma; 92.2 4 0.00014 38.3 15.0 138 182-343 69-206 (355)
168 2x19_B Importin-13; nuclear tr 91.9 11 0.00039 39.9 20.3 221 152-391 464-718 (963)
169 4ffb_C Protein STU2; tubulin f 91.7 0.95 3.3E-05 40.7 10.0 189 183-390 12-215 (278)
170 2x1g_F Cadmus; transport prote 91.6 8.8 0.0003 40.9 19.1 220 152-390 479-725 (971)
171 2db0_A 253AA long hypothetical 91.1 6.3 0.00022 33.3 21.1 215 132-387 31-246 (253)
172 2of3_A ZYG-9; multifunctional 90.9 4.6 0.00016 36.1 13.3 100 182-299 133-235 (266)
173 2f31_A Diaphanous protein homo 90.8 7.9 0.00027 33.8 16.9 161 111-278 21-207 (233)
174 3eg5_B Protein diaphanous homo 90.4 12 0.00041 35.4 18.8 165 110-282 86-276 (383)
175 4hat_C Exportin-1; heat repeat 89.7 1.7 5.8E-05 46.9 11.1 150 197-355 465-631 (1023)
176 3oc3_A Helicase MOT1, MOT1; re 87.1 0.44 1.5E-05 47.2 4.0 155 199-385 242-402 (800)
177 3u0r_A Apoptosis inhibitor 5; 86.7 6.5 0.00022 38.1 11.8 73 197-282 40-112 (507)
178 3mjh_B Early endosome antigen 86.1 0.13 4.5E-06 30.3 -0.2 17 9-25 5-21 (34)
179 1weo_A Cellulose synthase, cat 85.4 1.7 5.7E-05 31.5 5.2 47 10-57 17-70 (93)
180 2bnx_A Diaphanous protein homo 85.0 26 0.00089 33.0 17.8 163 111-281 25-213 (386)
181 1lsh_A Lipovitellin (LV-1N, LV 84.3 49 0.0017 35.7 19.5 175 182-387 392-576 (1056)
182 1wa5_C Importin alpha RE-expor 83.6 33 0.0011 36.4 17.1 178 150-340 471-668 (960)
183 3c2g_A SYS-1 protein; beta-cat 83.2 2.7 9.2E-05 39.1 7.0 175 209-386 266-469 (619)
184 1upk_A MO25 protein; transfera 82.8 24 0.00083 32.5 13.3 185 106-302 93-285 (341)
185 2x19_B Importin-13; nuclear tr 82.7 16 0.00056 38.7 14.3 175 197-385 461-644 (963)
186 2of3_A ZYG-9; multifunctional 82.3 26 0.00089 31.2 13.2 130 242-387 100-236 (266)
187 3c2g_A SYS-1 protein; beta-cat 82.1 18 0.0006 33.7 11.9 133 155-297 261-400 (619)
188 2f31_A Diaphanous protein homo 82.0 25 0.00084 30.5 15.9 148 227-376 42-217 (233)
189 1x5b_A Signal transducing adap 80.8 8.3 0.00028 31.7 8.7 73 182-258 53-125 (163)
190 4hat_C Exportin-1; heat repeat 80.6 8.8 0.0003 41.4 11.1 153 133-300 447-618 (1023)
191 2x1g_F Cadmus; transport prote 80.1 17 0.00058 38.7 13.2 174 198-387 477-663 (971)
192 2jvx_A NF-kappa-B essential mo 78.7 0.57 1.9E-05 26.3 0.6 18 7-24 1-18 (28)
193 2bnx_A Diaphanous protein homo 78.6 21 0.00072 33.7 12.0 141 182-324 48-213 (386)
194 3ldz_A STAM-1, signal transduc 77.8 12 0.0004 29.9 8.5 72 182-258 43-114 (140)
195 3zyq_A Hepatocyte growth facto 77.7 9.2 0.00032 33.2 8.5 73 182-258 46-118 (226)
196 1x5b_A Signal transducing adap 76.6 8.5 0.00029 31.6 7.5 79 314-393 53-131 (163)
197 3ibv_A Exportin-T; karyopherin 76.6 70 0.0024 34.2 16.6 223 152-390 458-733 (980)
198 3g2s_A C-terminal fragment of 75.4 14 0.00047 29.8 8.3 73 182-258 49-126 (149)
199 2kkx_A Uncharacterized protein 74.6 2.9 0.0001 30.9 3.6 49 7-57 25-79 (102)
200 3eg5_B Protein diaphanous homo 73.8 60 0.002 30.5 16.7 140 227-368 108-275 (383)
201 3zyq_A Hepatocyte growth facto 71.3 7.2 0.00025 33.9 6.1 79 314-393 46-124 (226)
202 1juq_A ADP-ribosylation factor 71.1 19 0.00064 29.7 8.4 71 182-258 51-128 (171)
203 2ko5_A Ring finger protein Z; 71.1 1.6 5.4E-05 32.0 1.4 45 10-57 29-73 (99)
204 1dvp_A HRS, hepatocyte growth 70.9 17 0.00057 31.3 8.4 71 182-258 43-115 (220)
205 1mhq_A ADP-ribosylation factor 70.4 15 0.00053 29.5 7.5 73 182-258 39-116 (148)
206 1dvp_A HRS, hepatocyte growth 68.8 8.6 0.00029 33.2 6.0 79 314-393 43-121 (220)
207 1upk_A MO25 protein; transfera 65.9 82 0.0028 29.0 14.3 208 182-399 79-295 (341)
208 6rxn_A Rubredoxin; electron tr 65.2 2 6.9E-05 27.2 0.9 13 5-17 26-38 (46)
209 3g2s_A C-terminal fragment of 65.0 15 0.00052 29.6 6.4 78 314-392 49-131 (149)
210 3m1i_C Exportin-1; heat repeat 64.7 40 0.0014 36.2 11.6 144 197-346 465-622 (1049)
211 3m1i_C Exportin-1; heat repeat 64.1 79 0.0027 33.9 13.8 99 152-259 468-570 (1049)
212 2kre_A Ubiquitin conjugation f 63.5 5.1 0.00017 29.9 3.0 34 8-43 62-95 (100)
213 2jne_A Hypothetical protein YF 63.4 0.25 8.7E-06 36.4 -4.1 40 10-56 33-72 (101)
214 3ldz_A STAM-1, signal transduc 61.6 17 0.00057 28.9 6.0 78 314-393 43-120 (140)
215 1juq_A ADP-ribosylation factor 61.1 15 0.0005 30.4 5.7 78 314-392 51-133 (171)
216 2cs3_A Protein C14ORF4, MY039 61.1 14 0.00049 26.0 4.7 44 7-50 13-63 (93)
217 1mhq_A ADP-ribosylation factor 61.1 14 0.00048 29.7 5.5 79 314-393 39-122 (148)
218 1e8j_A Rubredoxin; iron-sulfur 60.9 3.1 0.00011 27.1 1.2 14 5-18 32-45 (52)
219 4rxn_A Rubredoxin; electron tr 60.0 2.8 9.6E-05 27.5 0.9 14 5-18 32-45 (54)
220 3u0r_A Apoptosis inhibitor 5; 55.8 33 0.0011 33.3 7.8 30 182-215 66-95 (507)
221 1yk4_A Rubredoxin, RD; electro 55.7 3.7 0.00013 26.7 0.9 14 5-18 31-44 (52)
222 2v3b_B Rubredoxin 2, rubredoxi 54.8 3.8 0.00013 27.0 0.8 14 5-18 32-45 (55)
223 2kn9_A Rubredoxin; metalloprot 54.6 4.3 0.00015 29.1 1.1 17 5-21 56-72 (81)
224 2xqn_T Testin, TESS; metal-bin 53.6 7.4 0.00025 30.1 2.6 47 7-57 28-75 (126)
225 3pst_A Protein DOA1; protein d 51.9 91 0.0031 29.7 10.2 109 152-266 277-397 (425)
226 1elk_A Target of MYB1; superhe 51.8 32 0.0011 27.8 6.2 79 314-393 54-136 (157)
227 1dx8_A Rubredoxin; electron tr 51.2 4.7 0.00016 28.0 0.9 14 5-18 36-49 (70)
228 1lsh_A Lipovitellin (LV-1N, LV 50.6 2E+02 0.007 30.9 14.0 122 106-261 455-579 (1056)
229 1wgm_A Ubiquitin conjugation f 49.6 10 0.00035 28.1 2.6 33 9-43 57-89 (98)
230 1m3v_A FLIN4, fusion of the LI 49.1 13 0.00044 28.6 3.3 47 9-57 32-81 (122)
231 1elk_A Target of MYB1; superhe 49.1 76 0.0026 25.5 8.1 74 182-258 54-130 (157)
232 3uk3_C Zinc finger protein 217 48.2 7.5 0.00026 24.6 1.5 42 8-57 3-44 (57)
233 3qml_C Protein SLS1, nucleotid 48.1 1.2E+02 0.0041 27.5 9.8 137 153-299 44-188 (315)
234 2o35_A Hypothetical protein DU 47.0 7.6 0.00026 28.7 1.4 12 31-42 43-54 (105)
235 3fyb_A Protein of unknown func 45.9 8.1 0.00028 28.5 1.4 12 31-42 42-53 (104)
236 3vhs_A ATPase wrnip1; zinc fin 44.9 5.4 0.00018 21.4 0.3 13 9-21 6-18 (29)
237 4gzn_C ZFP-57, zinc finger pro 43.2 9.7 0.00033 25.2 1.5 42 8-57 3-44 (60)
238 2xjy_A Rhombotin-2; oncoprotei 42.3 16 0.00054 28.3 2.9 49 7-57 27-78 (131)
239 2ct7_A Ring finger protein 31; 40.8 2.9 9.9E-05 30.4 -1.7 29 11-39 27-61 (86)
240 2rgt_A Fusion of LIM/homeobox 40.7 35 0.0012 27.8 4.9 47 7-57 31-77 (169)
241 2eps_A POZ-, at HOOK-, and zin 40.4 15 0.00052 23.0 2.1 39 7-56 10-52 (54)
242 1vdy_A Hypothetical protein (R 40.3 94 0.0032 24.6 7.1 78 314-392 50-135 (140)
243 2epq_A POZ-, at HOOK-, and zin 38.3 16 0.00055 21.7 1.9 15 8-22 9-23 (45)
244 2jtn_A LIM domain-binding prot 38.1 28 0.00096 28.8 3.9 47 7-57 85-131 (182)
245 3gae_A Protein DOA1; UFD3, CDC 36.4 56 0.0019 28.7 5.8 104 152-261 105-220 (253)
246 3l3f_X Protein DOA1, DOA1/UFD3 35.8 83 0.0028 29.3 7.0 104 152-261 214-329 (362)
247 2gmg_A Hypothetical protein PF 35.3 13 0.00046 27.8 1.3 29 19-54 65-93 (105)
248 2ctd_A Zinc finger protein 512 35.2 28 0.00097 25.2 3.1 40 9-57 34-74 (96)
249 2gqj_A Zinc finger protein KIA 35.2 18 0.00063 26.1 2.1 42 8-57 23-66 (98)
250 2jrp_A Putative cytoplasmic pr 34.4 2.1 7.1E-05 30.7 -3.2 40 10-56 3-42 (81)
251 2ytm_A Zinc finger protein 28 34.3 36 0.0012 20.1 3.1 16 8-23 11-26 (46)
252 1bbo_A Human enhancer-binding 34.2 9.6 0.00033 24.1 0.3 37 10-57 2-41 (57)
253 1iml_A CRIP, cysteine rich int 34.2 26 0.00088 24.1 2.6 45 7-55 25-71 (76)
254 2d8x_A Protein pinch; LIM doma 33.7 30 0.001 23.3 2.8 31 10-40 32-63 (70)
255 1x6e_A Zinc finger protein 24; 33.3 9.1 0.00031 25.8 0.0 43 7-57 12-54 (72)
256 1wig_A KIAA1808 protein; LIM d 33.1 18 0.00062 24.8 1.6 29 10-38 32-62 (73)
257 1rut_X Flinc4, fusion protein 33.1 9.1 0.00031 32.1 0.0 49 7-57 30-81 (188)
258 2ytt_A Zinc finger protein 473 32.8 35 0.0012 20.2 2.8 16 8-23 11-26 (46)
259 2dar_A PDZ and LIM domain prot 32.8 33 0.0011 24.5 3.1 36 11-56 27-62 (90)
260 2lce_A B-cell lymphoma 6 prote 32.5 20 0.0007 24.1 1.8 43 7-57 15-57 (74)
261 2ely_A Zinc finger protein 224 32.5 38 0.0013 20.0 3.0 16 8-23 11-26 (46)
262 3l9t_A Putative uncharacterize 32.3 1.9E+02 0.0066 25.0 8.3 147 181-355 71-218 (240)
263 2d8z_A Four and A half LIM dom 32.2 36 0.0012 22.8 3.1 31 9-39 31-62 (70)
264 2lv2_A Insulinoma-associated p 31.8 11 0.00037 27.1 0.2 40 7-57 26-68 (85)
265 2cup_A Skeletal muscle LIM-pro 31.2 18 0.00062 26.5 1.4 46 8-57 32-78 (101)
266 2em8_A Zinc finger protein 224 30.2 36 0.0012 20.1 2.6 15 8-22 11-25 (46)
267 1x6a_A LIMK-2, LIM domain kina 30.2 44 0.0015 23.1 3.4 21 11-31 17-37 (81)
268 2l4z_A DNA endonuclease RBBP8, 29.3 36 0.0012 26.2 2.9 37 10-56 62-99 (123)
269 2emh_A Zinc finger protein 484 29.1 34 0.0012 20.1 2.3 16 8-23 11-26 (46)
270 2cur_A Skeletal muscle LIM-pro 29.0 49 0.0017 22.0 3.3 32 9-40 31-63 (69)
271 2emp_A Zinc finger protein 347 28.4 40 0.0014 19.8 2.6 15 8-22 11-25 (46)
272 3gjx_A Exportin-1; transport, 28.3 5.3E+02 0.018 27.7 12.7 98 152-258 494-595 (1073)
273 1x61_A Thyroid receptor intera 28.3 56 0.0019 21.9 3.6 31 10-40 34-65 (72)
274 1nyp_A Pinch protein; LIM doma 28.2 35 0.0012 22.5 2.4 23 11-33 7-29 (66)
275 1llm_C Chimera of ZIF23-GCN4; 28.1 22 0.00074 24.9 1.4 42 8-57 2-43 (88)
276 2adr_A ADR1; transcription reg 27.9 14 0.00048 23.6 0.3 38 9-57 2-42 (60)
277 2dlq_A GLI-kruppel family memb 27.7 37 0.0013 25.1 2.8 17 7-23 5-21 (124)
278 2d9h_A Zinc finger protein 692 27.4 25 0.00086 23.8 1.6 43 8-57 6-50 (78)
279 2emk_A Zinc finger protein 28 27.3 42 0.0014 19.8 2.5 15 8-22 11-25 (46)
280 2ee8_A Protein ODD-skipped-rel 27.2 50 0.0017 23.7 3.4 16 7-22 15-30 (106)
281 2eoo_A ZFP-95, zinc finger pro 26.6 43 0.0015 19.7 2.4 16 8-23 11-26 (46)
282 3pst_A Protein DOA1; protein d 26.5 3.2E+02 0.011 25.9 9.4 130 154-300 243-389 (425)
283 1ard_A Yeast transcription fac 26.4 28 0.00095 17.7 1.3 12 10-21 3-14 (29)
284 2jmo_A Parkin; IBR, E3 ligase, 26.2 8.2 0.00028 27.5 -1.3 31 9-39 25-68 (80)
285 1p7a_A BF3, BKLF, kruppel-like 26.0 25 0.00086 19.5 1.2 15 8-22 10-24 (37)
286 2emy_A Zinc finger protein 268 25.7 37 0.0013 20.0 2.0 16 8-23 11-26 (46)
287 2k5c_A Uncharacterized protein 24.9 17 0.00059 25.7 0.2 11 10-20 52-62 (95)
288 2kdx_A HYPA, hydrogenase/ureas 24.9 30 0.001 26.5 1.7 21 26-54 78-99 (119)
289 1znf_A 31ST zinc finger from X 24.9 25 0.00086 17.6 0.9 13 10-22 2-14 (27)
290 2m0e_A Zinc finger and BTB dom 24.7 33 0.0011 17.2 1.4 9 47-55 4-12 (29)
291 1klr_A Zinc finger Y-chromosom 24.7 31 0.0011 17.6 1.3 13 10-22 3-15 (30)
292 2epr_A POZ-, at HOOK-, and zin 24.6 13 0.00044 22.6 -0.4 17 7-23 10-26 (48)
293 2ytd_A Zinc finger protein 473 24.5 38 0.0013 19.9 1.9 15 8-22 11-25 (46)
294 2kvh_A Zinc finger and BTB dom 24.3 22 0.00076 17.9 0.6 14 9-22 3-16 (27)
295 3rru_A TOM1L1 protein; structu 24.2 1.8E+02 0.006 23.2 6.3 76 182-260 54-132 (152)
296 3rru_A TOM1L1 protein; structu 24.1 95 0.0032 24.9 4.6 79 314-393 54-136 (152)
297 1s24_A Rubredoxin 2; electron 24.0 29 0.00098 25.1 1.3 40 7-54 33-77 (87)
298 2emx_A Zinc finger protein 268 24.0 42 0.0014 19.5 2.0 15 8-22 9-23 (44)
299 2cor_A Pinch protein; LIM doma 23.9 38 0.0013 23.5 2.0 37 11-57 17-53 (79)
300 1j2o_A FLIN2, fusion of rhombo 23.8 69 0.0023 24.0 3.6 36 7-42 28-66 (114)
301 2m0d_A Zinc finger and BTB dom 23.8 23 0.00077 18.2 0.6 14 9-22 3-16 (30)
302 2kmk_A Zinc finger protein GFI 23.6 27 0.00091 23.7 1.1 39 10-56 2-40 (82)
303 3gae_A Protein DOA1; UFD3, CDC 23.5 62 0.0021 28.4 3.7 129 154-300 71-217 (253)
304 2yu8_A Zinc finger protein 347 23.4 53 0.0018 19.2 2.4 17 8-24 11-27 (46)
305 2dj7_A Actin-binding LIM prote 23.3 32 0.0011 24.0 1.5 38 9-56 15-53 (80)
306 2ytk_A Zinc finger protein 347 23.1 39 0.0013 19.9 1.7 15 8-22 11-25 (46)
307 1a1h_A QGSR zinc finger peptid 22.9 31 0.0011 23.9 1.4 14 9-22 4-19 (90)
308 1x64_A Alpha-actinin-2 associa 22.9 42 0.0014 23.9 2.1 39 9-57 25-63 (89)
309 2elr_A Zinc finger protein 406 22.8 33 0.0011 18.7 1.2 15 8-22 8-22 (36)
310 2emm_A ZFP-95, zinc finger pro 22.6 40 0.0014 19.8 1.7 15 8-22 11-25 (46)
311 1rik_A E6APC1 peptide; E6-bind 22.2 27 0.00093 17.8 0.7 13 10-22 3-15 (29)
312 1paa_A Yeast transcription fac 21.9 36 0.0012 17.4 1.2 13 10-22 3-15 (30)
313 1wyh_A SLIM 2, skeletal muscle 21.9 47 0.0016 22.3 2.1 21 11-31 7-29 (72)
314 1f2i_G Fusion of N-terminal 17 21.8 34 0.0012 22.7 1.4 42 8-57 18-61 (73)
315 1x62_A C-terminal LIM domain p 21.5 43 0.0015 23.1 1.9 38 8-55 14-51 (79)
316 2m0f_A Zinc finger and BTB dom 21.4 25 0.00086 17.8 0.5 13 10-22 3-15 (29)
317 2lvu_A Zinc finger and BTB dom 26.8 20 0.00068 17.9 0.0 13 10-22 3-15 (26)
318 2fiy_A Protein FDHE homolog; F 21.2 9.8 0.00033 34.8 -2.1 45 8-54 181-231 (309)
319 1wii_A Hypothetical UPF0222 pr 21.1 36 0.0012 24.5 1.3 41 4-56 18-58 (85)
320 2dlk_A Novel protein; ZF-C2H2 20.9 79 0.0027 21.0 3.2 14 9-22 7-22 (79)
321 3gs3_A Symplekin, LD45768P; he 20.8 4.2E+02 0.014 23.1 8.8 101 183-298 17-117 (257)
322 2kpi_A Uncharacterized protein 20.7 47 0.0016 21.7 1.7 14 6-19 7-20 (56)
323 2yt9_A Zinc finger-containing 20.4 24 0.00081 24.9 0.3 17 7-23 5-21 (95)
324 2ctu_A Zinc finger protein 483 20.4 22 0.00075 23.5 0.0 35 8-57 17-51 (73)
325 1yc5_A NAD-dependent deacetyla 20.3 37 0.0013 29.7 1.5 32 26-57 126-157 (246)
326 1x3h_A Leupaxin; paxillin fami 20.2 96 0.0033 21.2 3.6 20 11-30 17-36 (80)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=2.6e-32 Score=262.24 Aligned_cols=271 Identities=17% Similarity=0.084 Sum_probs=228.2
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhcc-------CCCchhHHHHHHHHHhcCCCchhhHHhhccc
Q 015513 106 HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYK-------GNKTTGLEEALRILSLVWSPSNENKALVDHH 178 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~-------~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~ 178 (405)
..+.+|++.|.+++.+ +++|+.|++.|++++|+.+|.+... ..+...+++|+++|.||+.+++++|..+...
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 5566899999999975 7999999999999999999964310 0113468999999999999887788888654
Q ss_pred chhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhh--hccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 015513 179 NQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLEL--ASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQA 256 (405)
Q Consensus 179 g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~--~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 256 (405)
+ ++||.|+.+|++ ++.++++.|+++|.+|+.. ++++..+. +.|+|++||++|....+.++++.|+.+|+||
T Consensus 126 ~-GaIp~LV~LL~s----~~~~v~~~A~~aL~nLs~~~~~~~k~~i~--~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nL 198 (354)
T 3nmw_A 126 K-GCMRALVAQLKS----ESEDLQQVIASVLRNLSWRADVNSKKTLR--EVGSVKALMECALEVKKESTLKSVLSALWNL 198 (354)
T ss_dssp H-HHHHHHHHGGGC----SCHHHHHHHHHHHHHHHTTCCHHHHHHHH--HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHCC----CCHHHHHHHHHHHHHHhccCCHHHHHHHH--HCCCHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4 279999999998 8999999999999999975 45566665 7799999999865433789999999999999
Q ss_pred cc-CCchhHHHH-hhcchHHHHHHhhcCCCC---CcHHHHHHHHHHHhc----CHhhHHHHHhcccchHHHHHHHHccCh
Q 015513 257 CP-MGGNRVKIT-EANAVFELIELELTKPEK---STTELIFNLLAQLCS----CADGRLKFREHAGAIAMVTKRLLRVSP 327 (405)
Q Consensus 257 ~~-~~~n~~~~v-~~g~v~~Lv~lL~~~~~~---~~~e~a~~~L~~L~~----~~~~~~~i~~~~g~i~~Lv~~l~~~s~ 327 (405)
+. +++|+..++ ..|++|+|+++|.++.+. .+++.|+++|.+|+. +++++..+++ .|+++.|+++|...+.
T Consensus 199 s~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~~~~~ 277 (354)
T 3nmw_A 199 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSL 277 (354)
T ss_dssp HTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHTTCSCH
T ss_pred HccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-cCCHHHHHHHHcCCCh
Confidence 99 668998988 799999999999875332 389999999999995 7888887765 7899999997766677
Q ss_pred hhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 328 ATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 328 ~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
..++.|+.+|++|+.. +++.++.+++.|+++.|+.+|++ .++.+|+.|++.|+.+...
T Consensus 278 ~v~~~A~~aL~nLa~~--~~~~~~~i~~~G~i~~Lv~LL~s-~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 278 TIVSNACGTLWNLSAR--NPKDQEALWDMGAVSMLKNLIHS-KHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHHHHHHHHTSS--CHHHHHHHHHTTHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcC
Confidence 8899999999999854 35689999999999999999985 5788899999999988875
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=4.8e-31 Score=260.89 Aligned_cols=268 Identities=17% Similarity=0.081 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhcc-------CCCchhHHHHHHHHHhcCCCchhhHHhhcccchh
Q 015513 109 ISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYK-------GNKTTGLEEALRILSLVWSPSNENKALVDHHNQD 181 (405)
Q Consensus 109 ~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~-------~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~ 181 (405)
.+|++.|.+++. ++++|..|++.|++++|+.+|..... ..+...+++|+++|.||+.+++.++..+...+ +
T Consensus 166 ~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~-G 243 (458)
T 3nmz_A 166 CPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK-G 243 (458)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCH-H
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcC-C
Confidence 489999999965 68999999999999999999964210 01134589999999999998877888776444 2
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhh--hccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc-
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLEL--ASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP- 258 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~--~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~- 258 (405)
+||.|+.+|++ ++.++++.|+++|.+|+.. ++++..+. +.|+|++||++|....+..+++.|+.+|+||+.
T Consensus 244 aIp~LV~LL~s----~~~~v~~~A~~aL~nLs~~~~~~~k~~I~--~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~ 317 (458)
T 3nmz_A 244 CMRALVAQLKS----ESEDLQQVIASVLRNLSWRADVNSKKTLR--EVGSVKALMECALEVKKESTLKSVLSALWNLSAH 317 (458)
T ss_dssp HHHHHHHGGGC----SCHHHHHHHHHHHHHHTSSCCHHHHHHHH--HTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhC----CCHHHHHHHHHHHHHHhcCCCHHHHHHHH--HcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccC
Confidence 79999999998 8999999999999999974 35566665 789999999986553388999999999999999
Q ss_pred CCchhHHHH-hhcchHHHHHHhhcCCCC---CcHHHHHHHHHHHhc----CHhhHHHHHhcccchHHHHHHHHccChhhh
Q 015513 259 MGGNRVKIT-EANAVFELIELELTKPEK---STTELIFNLLAQLCS----CADGRLKFREHAGAIAMVTKRLLRVSPATN 330 (405)
Q Consensus 259 ~~~n~~~~v-~~g~v~~Lv~lL~~~~~~---~~~e~a~~~L~~L~~----~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~ 330 (405)
+++|+..++ .+|++|+|+++|..+.+. .+++.|+++|.+|+. +++++..+++ .|+|+.|+++|...+...+
T Consensus 318 ~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~~~~~~v~ 396 (458)
T 3nmz_A 318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIV 396 (458)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHSSCSCHHHH
T ss_pred CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHHHHcCCChHHH
Confidence 778999998 799999999999876332 389999999999995 7788887765 7899999996666677889
Q ss_pred HHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 331 DRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 331 e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
+.|+.+|++|+.. +++.+..+++.|+++.|+.+|++ .++.+|+.|++.|+.+..+
T Consensus 397 ~~A~~aL~nLa~~--~~~~~~~i~~~G~I~~Lv~LL~s-~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 397 SNACGTLWNLSAR--NPKDQEALWDMGAVSMLKNLIHS-KHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHHHHHHSS--CHHHHHHHHHHTHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcC
Confidence 9999999999954 35689999999999999999985 5788999999999988875
No 3
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=242.79 Aligned_cols=277 Identities=15% Similarity=0.110 Sum_probs=223.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHhHHHHHHhchH----------HHHHHHHHhhccCCC---chhH-------HHHHHHHHhc
Q 015513 105 GHLRISTLKKMEALAMENERNRKSLEEAFVV----------RALVLFIITSYKGNK---TTGL-------EEALRILSLV 164 (405)
Q Consensus 105 ~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v----------~~Lv~lL~~~~~~~~---~~~~-------e~A~~~L~~L 164 (405)
++.+.+|+++|.+++...++......+.|++ +.+++++.+.....+ ..+. -.|+++|.|+
T Consensus 96 ~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nl 175 (458)
T 3nmz_A 96 KEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL 175 (458)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHh
Confidence 4889999999999999988888888888988 667777766531111 0123 3899999999
Q ss_pred CCCchhhHHhhcccchhHHHHHHHHHhhh-------cCCCcHHhHHHHHHHHHHHHhhhc-cchhhhcccHHHHHHHHHH
Q 015513 165 WSPSNENKALVDHHNQDLIGALMWVLQWE-------NNDRHVAVKTSAMIVLKMVLELAS-KGLLESTLNLDFFKEMVKL 236 (405)
Q Consensus 165 ~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~-------~~~~~~~~~~~A~~~L~~L~~~~~-~~~~i~~~~~g~i~~Lv~l 236 (405)
+.+ +++|..+.+.| +++.|+.+|.+. .+..+...+.+|+++|.+|+..++ ++..+. ...|+|++||++
T Consensus 176 s~~-~e~R~~i~~~G--~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~-~~~GaIp~LV~L 251 (458)
T 3nmz_A 176 SFD-EEHRHAMNELG--GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC-SMKGCMRALVAQ 251 (458)
T ss_dssp TTS-HHHHHHHHHTT--HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HCHHHHHHHHHG
T ss_pred cCC-HHHHHHHHHCC--CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHH-HcCCcHHHHHHH
Confidence 766 68999999998 999999999530 000346789999999999997765 444443 345779999999
Q ss_pred HhhcCChHHHHHHHHHHHHhccC--CchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc-CHhhHHHHHhccc
Q 015513 237 LKENISQQATKSGLHVLLQACPM--GGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS-CADGRLKFREHAG 313 (405)
Q Consensus 237 L~~~~~~~~~~~a~~aL~~L~~~--~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~-~~~~~~~i~~~~g 313 (405)
|+++ ++++++.|+++|+||+.. ++||..++++|+||+|+++|....+..+++.|+.+|++|+. +++++..++...|
T Consensus 252 L~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~G 330 (458)
T 3nmz_A 252 LKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG 330 (458)
T ss_dssp GGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTT
T ss_pred HhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcC
Confidence 9987 899999999999999985 46899999999999999986543367889999999999998 7889999876789
Q ss_pred chHHHHHHHHccCh----hhhHHHHHHHHHhccc-CCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 314 AIAMVTKRLLRVSP----ATNDRAVHILSSISKF-SATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~----~~~e~a~~~L~~L~~~-~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
+++.|+++|...++ ..++.|..+|++|+.. ...++.++.+++.|+++.|+.+|.+ ++..+++.|+++|..+..
T Consensus 331 al~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~-~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 331 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC-SCHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC-CChHHHHHHHHHHHHHHc
Confidence 99999996544443 2688899999999962 2335688999999999999999984 577899999999988873
No 4
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=1.7e-28 Score=244.88 Aligned_cols=280 Identities=13% Similarity=0.054 Sum_probs=229.0
Q ss_pred HHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhh
Q 015513 94 QVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNEN 171 (405)
Q Consensus 94 ~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~ 171 (405)
.++.|++.+++ ++.+..|++.|++++..++.+|..+++.|+||.|+.+|++. +...++.|+++|.||+.+++++
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~----~~~~~~~A~~aL~nLa~~~~~~ 78 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP----NQNVQQAAAGALRNLVFRSTTN 78 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS----CHHHHHHHHHHHHHHHSSCHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCHHH
Confidence 46788888854 58899999999999988888898999999999999999854 2356899999999999887789
Q ss_pred HHhhcccchhHHHHHHHHHh-hhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHh--------hc--
Q 015513 172 KALVDHHNQDLIGALMWVLQ-WENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLK--------EN-- 240 (405)
Q Consensus 172 ~~~i~~~g~~~i~~Lv~lL~-~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~--------~~-- 240 (405)
|..|.+.| +||.|+.+|+ + ++.+.++.|+++|.+|+..++++..++ + |++++|+++|. ++
T Consensus 79 k~~i~~~G--~i~~Lv~lL~~~----~~~~~~~~a~~aL~nLa~~~~~~~~i~--~-g~i~~Lv~ll~~~~s~~~~~~~~ 149 (457)
T 1xm9_A 79 KLETRRQN--GIREAVSLLRRT----GNAEIQKQLTGLLWNLSSTDELKEELI--A-DALPVLADRVIIPFSGWCDGNSN 149 (457)
T ss_dssp HHHHHHTT--CHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTSSSTHHHHH--H-HHHHHHHHHTTHHHHTCC-----
T ss_pred HHHHHHcC--CHHHHHHHHhhC----CCHHHHHHHHHHHHHHhcCHHhHHHHH--h-ccHHHHHHHHhccccccccCccc
Confidence 99999998 9999999999 6 789999999999999999877777676 6 99999999993 22
Q ss_pred -----CChHHHHHHHHHHHHhccCCchhHHHHhh-cchHHHHHHhhcC-----CCCCcHHHHHHHHHHHhcCHh------
Q 015513 241 -----ISQQATKSGLHVLLQACPMGGNRVKITEA-NAVFELIELELTK-----PEKSTTELIFNLLAQLCSCAD------ 303 (405)
Q Consensus 241 -----~~~~~~~~a~~aL~~L~~~~~n~~~~v~~-g~v~~Lv~lL~~~-----~~~~~~e~a~~~L~~L~~~~~------ 303 (405)
.+..+.+.|+++|+|||.+++++..+++. |++|+|+.+|.++ .+..+++.++++|.+|+...+
T Consensus 150 ~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~ 229 (457)
T 1xm9_A 150 MSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTR 229 (457)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCH
T ss_pred hhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcch
Confidence 13456679999999999998899999998 9999999999852 256789999999999973211
Q ss_pred ---------------------------------------------hHHHHHhcccchHHHHHHHHcc-ChhhhHHHHHHH
Q 015513 304 ---------------------------------------------GRLKFREHAGAIAMVTKRLLRV-SPATNDRAVHIL 337 (405)
Q Consensus 304 ---------------------------------------------~~~~i~~~~g~i~~Lv~~l~~~-s~~~~e~a~~~L 337 (405)
+.. .+-+.|+++.|+.+|... ++..++.|+.+|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL 308 (457)
T 1xm9_A 230 YRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSG-WLYHSDAIRTYLNLMGKSKKDATLEACAGAL 308 (457)
T ss_dssp HHHHHHTC----------------------------CCCCCSSCCGGG-GGGSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred hhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHH-HHhCcchHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 111 123457889999966544 357889999999
Q ss_pred HHhcccCCCH--HHHHHHH-hcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 338 SSISKFSATY--EVVLEML-SVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 338 ~~L~~~~~~~--~~~~~~~-~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
++|+...... ...+.++ +.|+++.|+.+|++ +++.+|..|+++|+.+...
T Consensus 309 ~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~-~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 309 QNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS-GNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTC-SCHHHHHHHHHHHHHHHTS
T ss_pred HHhccCcCcchHHHHHHHHHHcCCchHHHHHHhC-CCHhHHHHHHHHHHHHhcC
Confidence 9999765442 2323444 68999999999985 5788999999999999874
No 5
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=1.1e-27 Score=242.24 Aligned_cols=287 Identities=12% Similarity=0.054 Sum_probs=230.9
Q ss_pred chHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCC-
Q 015513 91 NKDQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSP- 167 (405)
Q Consensus 91 ~~~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~- 167 (405)
+..+++.||+.|.+ ...+.+|++.|++++..++.+|..|++.|+||+||.+|++.+ ..+++.|+++|.||+.+
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~----~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPK----KEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSS----HHHHHHHHHHHHHHTSSS
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCC----HHHHHHHHHHHHHHHccC
Confidence 45579999999954 488899999999999999999999999999999999998643 45699999999999985
Q ss_pred chhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhh--------
Q 015513 168 SNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKE-------- 239 (405)
Q Consensus 168 ~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~-------- 239 (405)
++++|..|.+.| +|+.|+.+|++ +.+.+.+++|+++|++|+..++++..|+ . +++++|+++|..
T Consensus 122 ~~~nk~~I~~~G--aIp~LV~LL~s---~~~~~~~e~aa~aL~nLS~~~~~k~~I~--~-~alp~Lv~LL~~p~sg~~~~ 193 (584)
T 3l6x_A 122 DQDNKIAIKNCD--GVPALVRLLRK---ARDMDLTEVITGTLWNLSSHDSIKMEIV--D-HALHALTDEVIIPHSGWERE 193 (584)
T ss_dssp CHHHHHHHHHTT--HHHHHHHHHHH---CCSHHHHHHHHHHHHHHTTSGGGHHHHH--H-HTHHHHHHHTHHHHHCCC--
T ss_pred CHHHHHHHHHcC--CHHHHHHHHcC---CCCHHHHHHHHHHHHHHhCCchhhHHHH--h-ccHHHHHHHHhccccccccc
Confidence 578999999998 99999999997 3578899999999999999888888886 3 679999998721
Q ss_pred ---------cCChHHHHHHHHHHHHhccCCc-hhHHHHhh-cchHHHHHHhhcC-----CCCCcHHHHHHHHHHHhcCHh
Q 015513 240 ---------NISQQATKSGLHVLLQACPMGG-NRVKITEA-NAVFELIELELTK-----PEKSTTELIFNLLAQLCSCAD 303 (405)
Q Consensus 240 ---------~~~~~~~~~a~~aL~~L~~~~~-n~~~~v~~-g~v~~Lv~lL~~~-----~~~~~~e~a~~~L~~L~~~~~ 303 (405)
..+..+++.|+++|+||+.+.+ +|..+++. |++++|+.+|.+. .+...++.|+++|.||+...+
T Consensus 194 ~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~ 273 (584)
T 3l6x_A 194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVH 273 (584)
T ss_dssp --------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccc
Confidence 1246899999999999999775 58888884 7788999999752 255688999999999997632
Q ss_pred hHH-------------------------HHHhcccchHHHHHHHHc-cChhhhHHHHHHHHHhcccCCC--HHHHHHHHh
Q 015513 304 GRL-------------------------KFREHAGAIAMVTKRLLR-VSPATNDRAVHILSSISKFSAT--YEVVLEMLS 355 (405)
Q Consensus 304 ~~~-------------------------~i~~~~g~i~~Lv~~l~~-~s~~~~e~a~~~L~~L~~~~~~--~~~~~~~~~ 355 (405)
... ..+-+.++|+.|+.+|.. .+...+|.|+.+|++||..... ..++..+.+
T Consensus 274 ~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~ 353 (584)
T 3l6x_A 274 REIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQ 353 (584)
T ss_dssp HHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTS
T ss_pred ccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHH
Confidence 110 001123456677885533 3468899999999999875421 123445556
Q ss_pred cChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccC
Q 015513 356 VGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWN 390 (405)
Q Consensus 356 ~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~ 390 (405)
.|+++.|+.||++ .++.+++.|+++|+.|.....
T Consensus 354 ~~glp~Lv~LL~s-~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 354 EKALSAIADLLTN-EHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp HHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCS
T ss_pred cCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhCChh
Confidence 8999999999985 578999999999999988644
No 6
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=2.3e-28 Score=234.84 Aligned_cols=244 Identities=14% Similarity=0.045 Sum_probs=205.1
Q ss_pred hHHHHHHHHHhc-------------chhHHHHHHHHHHHHHHhhHHhHHHHHH-hchHHHHHHHHHhhccCCCchhHHHH
Q 015513 92 KDQVRKLVRDLD-------------SGHLRISTLKKMEALAMENERNRKSLEE-AFVVRALVLFIITSYKGNKTTGLEEA 157 (405)
Q Consensus 92 ~~~i~~lv~~l~-------------~~~~~~~Al~~L~~l~~~~~~~r~~i~~-~g~v~~Lv~lL~~~~~~~~~~~~e~A 157 (405)
..+++.|+..+. +...+.+|++.|.+++..++.+|..+.. .|+||.|+.+|.+. +.+.++.|
T Consensus 72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~----~~~v~~~A 147 (354)
T 3nmw_A 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE----SEDLQQVI 147 (354)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCS----CHHHHHHH
T ss_pred cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCC----CHHHHHHH
Confidence 457777877773 2367899999999999988889988865 56799999999854 23569999
Q ss_pred HHHHHhcCCC-chhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHh-hhccchhhhcccHHHHHHHHH
Q 015513 158 LRILSLVWSP-SNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLE-LASKGLLESTLNLDFFKEMVK 235 (405)
Q Consensus 158 ~~~L~~L~~~-~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~-~~~~~~~i~~~~~g~i~~Lv~ 235 (405)
+++|.+|+.. ++++|..+.+.| +||.|+.+|.+ .++.+.++.|+.+|++|+. .++++..+. ...|+++.|++
T Consensus 148 ~~aL~nLs~~~~~~~k~~i~~~G--~Ip~Lv~lL~~---~~~~~~~~~A~~aL~nLs~~~~~nk~~i~-~~~Gai~~Lv~ 221 (354)
T 3nmw_A 148 ASVLRNLSWRADVNSKKTLREVG--SVKALMECALE---VKKESTLKSVLSALWNLSAHCTENKADIC-AVDGALAFLVG 221 (354)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHTT--HHHHHHHHHHH---CCCHHHHHHHHHHHHHHHTTCHHHHHHHH-HSTTHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHCC--CHHHHHHHHhc---CCCHHHHHHHHHHHHHHHccChhhhHHHH-HhcCcHHHHHH
Confidence 9999999875 567899999988 99999998643 1788999999999999998 556676665 46799999999
Q ss_pred HHhhcCCh---HHHHHHHHHHHHhcc----CCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc-CHhhHHH
Q 015513 236 LLKENISQ---QATKSGLHVLLQACP----MGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS-CADGRLK 307 (405)
Q Consensus 236 lL~~~~~~---~~~~~a~~aL~~L~~----~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~-~~~~~~~ 307 (405)
+|+++.+. ++++.|+++|+||+. +++++..++++|++|+|+++|.++ +..+++.|+++|++|+. +++++..
T Consensus 222 lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~ 300 (354)
T 3nmw_A 222 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEA 300 (354)
T ss_dssp HTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99876222 589999999999996 778999999999999999999986 77899999999999994 6778888
Q ss_pred HHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCH
Q 015513 308 FREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATY 347 (405)
Q Consensus 308 i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~ 347 (405)
+++ .|+|++|++++...+...++.|..+|.+|+...++.
T Consensus 301 i~~-~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 301 LWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHH-TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 765 799999999655556788999999999999887653
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.95 E-value=3.9e-27 Score=234.97 Aligned_cols=283 Identities=11% Similarity=0.050 Sum_probs=220.0
Q ss_pred chHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHH-hhccCCCchhHHHHHHHHHhcCCC
Q 015513 91 NKDQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFII-TSYKGNKTTGLEEALRILSLVWSP 167 (405)
Q Consensus 91 ~~~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~-~~~~~~~~~~~e~A~~~L~~L~~~ 167 (405)
...+++.|++.+++ +..+..|++.|++++..++++|..|++.|+||.|+++|. +. +.+.++.|+++|.||+.+
T Consensus 42 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~----~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG----NAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCC----CHHHHHHHHHHHHHHHTS
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCC----CHHHHHHHHHHHHHHhcC
Confidence 35678899999954 478999999999999988999999999999999999997 32 245699999999999988
Q ss_pred chhhHHhhcccchhHHHHHHHHHh--------hhcC---C-CcHHhHHHHHHHHHHHHhhhccchhhhcccH-HHHHHHH
Q 015513 168 SNENKALVDHHNQDLIGALMWVLQ--------WENN---D-RHVAVKTSAMIVLKMVLELASKGLLESTLNL-DFFKEMV 234 (405)
Q Consensus 168 ~~~~~~~i~~~g~~~i~~Lv~lL~--------~~~~---~-~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~-g~i~~Lv 234 (405)
+++|..+.+ | ++|.|+.+|. +... + .+.+++.+|+++|.+|+..++++..+. +. |++++|+
T Consensus 118 -~~~~~~i~~-g--~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~--~~~g~i~~Lv 191 (457)
T 1xm9_A 118 -DELKEELIA-D--ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR--NYSGLIDSLM 191 (457)
T ss_dssp -SSTHHHHHH-H--HHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHT--TSTTHHHHHH
T ss_pred -HHhHHHHHh-c--cHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHH--HcCCCHHHHH
Confidence 578888888 8 9999999993 2000 0 134556699999999998866666554 55 8888888
Q ss_pred HHHhh---------------------------------------------------------------------------
Q 015513 235 KLLKE--------------------------------------------------------------------------- 239 (405)
Q Consensus 235 ~lL~~--------------------------------------------------------------------------- 239 (405)
.+|++
T Consensus 192 ~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (457)
T 1xm9_A 192 AYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEET 271 (457)
T ss_dssp HHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCS
T ss_pred HHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCcccccc
Confidence 88764
Q ss_pred -----------------------cCChHHHHHHHHHHHHhccCCch------hHHHHhhcchHHHHHHhhcCCCCCcHHH
Q 015513 240 -----------------------NISQQATKSGLHVLLQACPMGGN------RVKITEANAVFELIELELTKPEKSTTEL 290 (405)
Q Consensus 240 -----------------------~~~~~~~~~a~~aL~~L~~~~~n------~~~~v~~g~v~~Lv~lL~~~~~~~~~e~ 290 (405)
+.++..++.|+++|.||+.+... +..+.++|++|+|+++|.++ +..++..
T Consensus 272 ~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~ 350 (457)
T 1xm9_A 272 NPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRS 350 (457)
T ss_dssp SCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHH
T ss_pred CchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHH
Confidence 11345667789999999985432 22334689999999999986 7889999
Q ss_pred HHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccCh------hhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHH
Q 015513 291 IFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSP------ATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCM 364 (405)
Q Consensus 291 a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~------~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ 364 (405)
|+++|.+|+.+.+++..+. .|+|++|+++|...+. .....++.+|.++.... .+....+.+.|++++|+.
T Consensus 351 A~~aL~nls~~~~~~~~i~--~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~--~~~~~~i~~~g~l~~L~~ 426 (457)
T 1xm9_A 351 GASLLSNMSRHPLLHRVMG--NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ--PQLAKQYFSSSMLNNIIN 426 (457)
T ss_dssp HHHHHHHHHTSGGGHHHHH--HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC--THHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHH--HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC--HHHHHHHHHcCCHHHHHH
Confidence 9999999999888887763 4799999995543322 23345666666766544 347888999999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHhhcc
Q 015513 365 VTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 365 ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
++.++.++.++++|..+|..+-.+
T Consensus 427 L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 427 LCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred HHcCCCcHHHHHHHHHHHHHHHcc
Confidence 999654889999999998865543
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=1.2e-26 Score=242.07 Aligned_cols=281 Identities=16% Similarity=0.091 Sum_probs=233.3
Q ss_pred hHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhH-----------------------------HhH---HHHHHhchHHH
Q 015513 92 KDQVRKLVRDLDS--GHLRISTLKKMEALAMENE-----------------------------RNR---KSLEEAFVVRA 137 (405)
Q Consensus 92 ~~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~-----------------------------~~r---~~i~~~g~v~~ 137 (405)
...++.||..+++ ...+..|++.|.+++...+ .++ +.++++|+||.
T Consensus 420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~ 499 (810)
T 3now_A 420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA 499 (810)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence 5678888888854 4889999999999997432 233 68889999999
Q ss_pred HHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhc
Q 015513 138 LVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELAS 217 (405)
Q Consensus 138 Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~ 217 (405)
|+.+|++.+ ...++.|+++|.||+.+ ++++..+.+.| ++|.|+.+|++ ++...+++|+++|.+|+...+
T Consensus 500 LV~LL~s~s----~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~G--aip~Lv~LL~s----~~~~~k~~Aa~AL~nL~~~~~ 568 (810)
T 3now_A 500 LCALAKTES----HNSQELIARVLNAVCGL-KELRGKVVQEG--GVKALLRMALE----GTEKGKRHATQALARIGITIN 568 (810)
T ss_dssp HHHHHTCCC----HHHHHHHHHHHHHHHTS-HHHHHHHHHTT--HHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCC----HHHHHHHHHHHHHHcCC-HHHHHHHHHCC--CHHHHHHHHcc----CCHHHHHHHHHHHHHHhcCCC
Confidence 999998642 45699999999999965 46899999998 99999999998 889999999999999987654
Q ss_pred cchhhhc-ccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCC-chhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHH
Q 015513 218 KGLLEST-LNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMG-GNRVKITEANAVFELIELELTKPEKSTTELIFNLL 295 (405)
Q Consensus 218 ~~~~i~~-~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~-~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L 295 (405)
....+.. ...|++++|+++|.++.+...+..|+++|.||+... +++..++++|++|.|+.+|.++ +..+++.|+.+|
T Consensus 569 p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L 647 (810)
T 3now_A 569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCL 647 (810)
T ss_dssp HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHH
T ss_pred hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 4332210 124799999999986534455678999999999975 6899999999999999999986 789999999999
Q ss_pred HHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHh-cChHHHHHHHHhccCcHHH
Q 015513 296 AQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLS-VGAVSKLCMVTQADCEKYL 374 (405)
Q Consensus 296 ~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~-~G~v~~Ll~ll~~~~~~~~ 374 (405)
.||+.+++.+..++...|+++.|+.++...+...++.|..+|.+|+..+ +...+.+++ .|+++.|+.+|.+ ++..+
T Consensus 648 ~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s--~~~~~~ii~~~g~I~~Lv~LL~s-~d~~v 724 (810)
T 3now_A 648 CNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS--VKCCEKILAIASWLDILHTLIAN-PSPAV 724 (810)
T ss_dssp HHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC--HHHHHHHHTSTTHHHHHHHHHTC-SSHHH
T ss_pred HHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC--HHHHHHHHHHcCCHHHHHHHHCC-CCHHH
Confidence 9999999999998754689999999555445678888999999998753 346888888 9999999999984 68888
Q ss_pred HHHHHHHHHHhhc
Q 015513 375 KDRAKEILRLHSN 387 (405)
Q Consensus 375 k~~A~~ll~~l~~ 387 (405)
|+.|.++|..+..
T Consensus 725 q~~A~~aL~NL~~ 737 (810)
T 3now_A 725 QHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9888888887765
No 9
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.95 E-value=3.7e-26 Score=230.98 Aligned_cols=284 Identities=14% Similarity=0.084 Sum_probs=215.8
Q ss_pred hHHHHHHHHHhcc--hhHHHHHHHHHHHHHHh-hHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCc
Q 015513 92 KDQVRKLVRDLDS--GHLRISTLKKMEALAME-NERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPS 168 (405)
Q Consensus 92 ~~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~-~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~ 168 (405)
..+|+.||+.|.+ .+.+.+|+++|++++.. +++||..|+++|+|+.|+.+|.+.. +.+.++.|+++|.+|+.++
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~---~~~~~e~aa~aL~nLS~~~ 165 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKAR---DMDLTEVITGTLWNLSSHD 165 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCC---SHHHHHHHHHHHHHHTTSG
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCC---CHHHHHHHHHHHHHHhCCc
Confidence 4688999999965 48999999999999985 6899999999999999999998632 2356899999999999864
Q ss_pred hhhHHhhcccchhHHHHHHHHHhhh----c----------CCCcHHhHHHHHHHHHHHHhhhcc-chhhhcccHHH----
Q 015513 169 NENKALVDHHNQDLIGALMWVLQWE----N----------NDRHVAVKTSAMIVLKMVLELASK-GLLESTLNLDF---- 229 (405)
Q Consensus 169 ~~~~~~i~~~g~~~i~~Lv~lL~~~----~----------~~~~~~~~~~A~~~L~~L~~~~~~-~~~i~~~~~g~---- 229 (405)
++|..|.+ + +++.|+.+|... . ...+..++++|+++|.||+...++ +..+. ...|+
T Consensus 166 -~~k~~I~~-~--alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~-~~~Gli~~L 240 (584)
T 3l6x_A 166 -SIKMEIVD-H--ALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLR-ECDGLVDAL 240 (584)
T ss_dssp -GGHHHHHH-H--THHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHH-HSTTHHHHH
T ss_pred -hhhHHHHh-c--cHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCCcHHHH
Confidence 78888875 4 799999987210 0 002468889999999999876533 33332 22233
Q ss_pred ---------------------------------------------------------------------HHHHHHHHhhc
Q 015513 230 ---------------------------------------------------------------------FKEMVKLLKEN 240 (405)
Q Consensus 230 ---------------------------------------------------------------------i~~Lv~lL~~~ 240 (405)
++.|+.+|+.+
T Consensus 241 V~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s 320 (584)
T 3l6x_A 241 IFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES 320 (584)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccC
Confidence 34445555443
Q ss_pred CChHHHHHHHHHHHHhccCC-----chhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccch
Q 015513 241 ISQQATKSGLHVLLQACPMG-----GNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAI 315 (405)
Q Consensus 241 ~~~~~~~~a~~aL~~L~~~~-----~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i 315 (405)
.++.++++|++||.|||.+. .++..+.+.|++|.|++||.++ +..+++.|+++|.+|+.+..++..| . .|+|
T Consensus 321 ~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~~I-~-~g~i 397 (584)
T 3l6x_A 321 KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDARNKELI-G-KHAI 397 (584)
T ss_dssp CCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCSCHHHH-H-HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCChhHHHHH-H-hCCH
Confidence 35677788888888887654 2344555689999999999986 7889999999999999998888776 4 6899
Q ss_pred HHHHHHHHccC--------hhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhcc-CcHHHHHHHHHHHHHhh
Q 015513 316 AMVTKRLLRVS--------PATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQAD-CEKYLKDRAKEILRLHS 386 (405)
Q Consensus 316 ~~Lv~~l~~~s--------~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~-~~~~~k~~A~~ll~~l~ 386 (405)
|.||++|...+ ......+..+|.+|+. .+.++++.+++.|++++|+.++.++ .++..++.|+.+|..+-
T Consensus 398 p~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a--~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 398 PNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA--ENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc--CCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 99999554432 2334556666666664 3456899999999999999999864 47889999999999886
Q ss_pred cc
Q 015513 387 NV 388 (405)
Q Consensus 387 ~~ 388 (405)
.+
T Consensus 476 ~~ 477 (584)
T 3l6x_A 476 GY 477 (584)
T ss_dssp TS
T ss_pred cC
Confidence 53
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=1.2e-26 Score=234.76 Aligned_cols=285 Identities=14% Similarity=0.120 Sum_probs=234.7
Q ss_pred chHHHHHHHHHhcc---hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCC
Q 015513 91 NKDQVRKLVRDLDS---GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSP 167 (405)
Q Consensus 91 ~~~~i~~lv~~l~~---~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~ 167 (405)
+.+.|+.||+.|.+ +..|.+|++.|.+++..+++++..+++.|+||.|+.+|++++ ..+++.|+++|.||+.+
T Consensus 98 ~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~----~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 98 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH----AHISEQAVWALGNIAGD 173 (510)
T ss_dssp HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC----HHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCC----HHHHHHHHHHHHHHHhC
Confidence 34678889998842 478999999999999999999999999999999999998643 45699999999999998
Q ss_pred chhhHHhhcccchhHHHHHHHHHhhhc-CCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHH
Q 015513 168 SNENKALVDHHNQDLIGALMWVLQWEN-NDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQAT 246 (405)
Q Consensus 168 ~~~~~~~i~~~g~~~i~~Lv~lL~~~~-~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~ 246 (405)
.++++..+.+.| +++.|+.+|.+.. +......+.+++++|.+++........+. ...|+++.|+++|.++ +++++
T Consensus 174 ~~~~r~~v~~~G--~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~-~~~~~lp~L~~LL~~~-~~~v~ 249 (510)
T 3ul1_B 174 GSAFRDLVIKHG--AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD-AVEQILPTLVRLLHHN-DPEVL 249 (510)
T ss_dssp CHHHHHHHHHTT--CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHH-HHHHHHHHHHHHTTCS-CHHHH
T ss_pred CHHHHHHHHHcC--ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHH-HHHhHHHHHHHHHhcC-CHHHH
Confidence 888999999998 9999999998610 00234467899999999998766555544 3468999999999998 89999
Q ss_pred HHHHHHHHHhccCCchh-HHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHcc
Q 015513 247 KSGLHVLLQACPMGGNR-VKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRV 325 (405)
Q Consensus 247 ~~a~~aL~~L~~~~~n~-~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~ 325 (405)
..|+++|.+|+.+..++ ..+++.|++|.|+++|.+. +..++..++.+|.+|+...+.....+...|+++.|+++|...
T Consensus 250 ~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~ 328 (510)
T 3ul1_B 250 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 328 (510)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS
T ss_pred HHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC
Confidence 99999999999977654 4567899999999999985 778999999999999876655444444578999999965555
Q ss_pred ChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 326 SPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 326 s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
....++.|+.+|.+|+... ...+..+++.|+++.|+.++++ ++..+|..|+++|..+..
T Consensus 329 ~~~v~~~A~~aL~nl~a~~--~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 329 KTNIQKEATWTMSNITAGR--QDQIQQVVNHGLVPFLVGVLSK-ADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp SHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCc--HHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence 5677888999999998654 4578889999999999999984 577888888888887764
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=1.2e-26 Score=234.70 Aligned_cols=280 Identities=13% Similarity=0.083 Sum_probs=232.2
Q ss_pred HHHHHHHHhcc--hhHHHHHHHHHHHHH-HhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchh
Q 015513 94 QVRKLVRDLDS--GHLRISTLKKMEALA-MENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNE 170 (405)
Q Consensus 94 ~i~~lv~~l~~--~~~~~~Al~~L~~l~-~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~ 170 (405)
.++.+|+.+.+ .+.|.+|+..+|.+. ++.....+.+++.|+||.||.+|++.+ ....+.+|+|+|.||+.++++
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~---~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD---CSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTT---CHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCC---CHHHHHHHHHHHHHHhcCCHH
Confidence 48889999954 488999999998754 444445688999999999999997432 235689999999999988888
Q ss_pred hHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcC----ChHHH
Q 015513 171 NKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENI----SQQAT 246 (405)
Q Consensus 171 ~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~----~~~~~ 246 (405)
++..+++.| +||.|+.+|++ ++.++++.|+++|.+|+.+.+..+..+ .+.|++++|+.+|.... .....
T Consensus 135 ~~~~vv~~G--aIp~Lv~lL~s----~~~~v~e~A~~aL~nLa~d~~~~r~~v-~~~G~i~~Ll~lL~~~~~~~~~~~~~ 207 (510)
T 3ul1_B 135 QTKAVVDGG--AIPAFISLLAS----PHAHISEQAVWALGNIAGDGSAFRDLV-IKHGAIDPLLALLAVPDLSTLACGYL 207 (510)
T ss_dssp HHHHHHHTT--HHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTCHHHHHHHTCSSCGGGSCHHHH
T ss_pred HHHHHHHCC--CHHHHHHHHcC----CCHHHHHHHHHHHHHHHhCCHHHHHHH-HHcCChHHHHHHHHhccchhhhHHHH
Confidence 999999998 99999999998 899999999999999998755444444 47899999999998641 23567
Q ss_pred HHHHHHHHHhccCCchhHHH-HhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHcc
Q 015513 247 KSGLHVLLQACPMGGNRVKI-TEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRV 325 (405)
Q Consensus 247 ~~a~~aL~~L~~~~~n~~~~-v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~ 325 (405)
+.++++|.+++.+..+...+ ...|++|.|+.+|.+. +..++..|+++|.+|+..++++...+...|+++.|++++...
T Consensus 208 ~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 286 (510)
T 3ul1_B 208 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 286 (510)
T ss_dssp HHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC
Confidence 89999999999977654443 4478999999999886 788999999999999988777666666689999999977666
Q ss_pred ChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 326 SPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 326 s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
+...+..++.+|++|+..+ +.....+++.|+++.|+.+|. +..+.+|+.|+++|..+..
T Consensus 287 ~~~v~~~al~aL~nl~~~~--~~~~~~i~~~g~l~~L~~LL~-~~~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 287 ELPIVTPALRAIGNIVTGT--DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITA 345 (510)
T ss_dssp CHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTGGGGCC-CTT-CSSHHHHHHHHHHHHHHTT
T ss_pred ChhhhhHHHHHHHHhhcCC--HHHHHHHhhccchHHHHHHhc-CCCHHHHHHHHHHHHHHHc
Confidence 6788999999999998653 457888999999999999998 4578889999999988765
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.94 E-value=4.4e-26 Score=231.59 Aligned_cols=285 Identities=13% Similarity=0.112 Sum_probs=234.8
Q ss_pred chHHHHHHHHHhcc---hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCC
Q 015513 91 NKDQVRKLVRDLDS---GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSP 167 (405)
Q Consensus 91 ~~~~i~~lv~~l~~---~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~ 167 (405)
+.+.++.||+.+.. +..+.+|++.|.+++..++.++..+++.|+||.|+.+|.+++ ...++.|+++|.+|+.+
T Consensus 117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~----~~v~e~A~~aL~nLa~~ 192 (529)
T 3tpo_A 117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH----AHISEQAVWALGNIAGA 192 (529)
T ss_dssp HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC----HHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC----HHHHHHHHHHHHHHhcc
Confidence 35678888988842 478999999999999999999999999999999999998653 35699999999999998
Q ss_pred chhhHHhhcccchhHHHHHHHHHhhhc-CCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHH
Q 015513 168 SNENKALVDHHNQDLIGALMWVLQWEN-NDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQAT 246 (405)
Q Consensus 168 ~~~~~~~i~~~g~~~i~~Lv~lL~~~~-~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~ 246 (405)
+++++..+.+.| +++.|+.+|.... +......+.+++++|.+++........+. ...|+++.|+++|.++ +++++
T Consensus 193 ~~~~r~~i~~~g--~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~-~~~~~lp~L~~LL~~~-~~~v~ 268 (529)
T 3tpo_A 193 GSAFRDLVIKHG--AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD-AVEQILPTLVRLLHHN-DPEVL 268 (529)
T ss_dssp CHHHHHHHHHTT--CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHH-HHHHHHHHHHHHTTSS-CHHHH
T ss_pred CHHHHHHHHHcC--CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHH-HHhhHHHHHHHHhcCC-cHHHH
Confidence 889999999998 9999999998511 00234567899999999998766555444 3468999999999998 89999
Q ss_pred HHHHHHHHHhccCCch-hHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHcc
Q 015513 247 KSGLHVLLQACPMGGN-RVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRV 325 (405)
Q Consensus 247 ~~a~~aL~~L~~~~~n-~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~ 325 (405)
..|+++|.+|+.+.++ ...+++.|++|.|+++|.+. +..++..++.+|.+|+...+.....+...|+++.|++++...
T Consensus 269 ~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~ 347 (529)
T 3tpo_A 269 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 347 (529)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS
T ss_pred HHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC-ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC
Confidence 9999999999997754 45567899999999999885 778999999999999876554444444578999999966555
Q ss_pred ChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 326 SPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 326 s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
+...++.|+.+|.+|+... ...+..+++.|+++.|+.+|.+ ++..+|..|+++|..+..
T Consensus 348 ~~~i~~~a~~aL~nl~~~~--~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 348 KTNIQKEATWTMSNITAGR--QDQIQQVVNHGLVPFLVGVLSK-ADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp SHHHHHHHHHHHHHHHTSC--HHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccc--HHHHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHHHc
Confidence 6677888999999998654 4578888999999999999985 577788888888877654
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.94 E-value=3.9e-26 Score=238.13 Aligned_cols=279 Identities=14% Similarity=0.078 Sum_probs=232.2
Q ss_pred HHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchh
Q 015513 93 DQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNE 170 (405)
Q Consensus 93 ~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~ 170 (405)
..++.|+..+++ +..|.+|++.|.+++. ++.+|..+++.|++++|+.+|.+.. ...++.|+++|.+|+.+.+.
T Consensus 495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~----~~~k~~Aa~AL~nL~~~~~p 569 (810)
T 3now_A 495 GITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGT----EKGKRHATQALARIGITINP 569 (810)
T ss_dssp THHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSC----HHHHHHHHHHHHHHHHHSCH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCC----HHHHHHHHHHHHHHhcCCCh
Confidence 456778888754 5899999999999995 5679999999999999999998642 34589999999999764322
Q ss_pred hHHhhc---ccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhh-ccchhhhcccHHHHHHHHHHHhhcCChHHH
Q 015513 171 NKALVD---HHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELA-SKGLLESTLNLDFFKEMVKLLKENISQQAT 246 (405)
Q Consensus 171 ~~~~i~---~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~-~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~ 246 (405)
...+. ..+ ++|+|+.+|.+ +.+...+..|+++|.||+..+ +.+..+. +.|+++.|+.+|.++ ++.++
T Consensus 570 -~~~~~~~~~~~--aIppLv~LL~~---~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii--~aG~l~~Lv~LL~s~-~~~Vq 640 (810)
T 3now_A 570 -EVSFSGQRSLD--VIRPLLNLLQQ---DCTALENFESLMALTNLASMNESVRQRII--KEQGVSKIEYYLMED-HLYLT 640 (810)
T ss_dssp -HHHTTTHHHHH--THHHHHHTTST---TSCHHHHHHHHHHHHHHTTSCHHHHHHHH--HTTHHHHHHHHHHSC-CTTHH
T ss_pred -hhhhcchhhhc--HHHHHHHHhCC---CCcHHHHHHHHHHHHHHhcCCHHHHHHHH--HcCCHHHHHHHHcCC-CHHHH
Confidence 12211 124 89999999986 235556678999999999874 4555555 679999999999987 88999
Q ss_pred HHHHHHHHHhccCCchhHHHHh-hcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc-CHhhHHHHHhcccchHHHHHHHHc
Q 015513 247 KSGLHVLLQACPMGGNRVKITE-ANAVFELIELELTKPEKSTTELIFNLLAQLCS-CADGRLKFREHAGAIAMVTKRLLR 324 (405)
Q Consensus 247 ~~a~~aL~~L~~~~~n~~~~v~-~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~ 324 (405)
+.|+++|.||+.+++++..+++ .|+++.|+.++.+. +..+++.|+++|++|+. +++....++...|++++|++++..
T Consensus 641 ~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s 719 (810)
T 3now_A 641 RAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN 719 (810)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC
Confidence 9999999999999999999886 79999999999885 78899999999999998 677778877657999999997766
Q ss_pred cChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhcc--CcHHHHHHHHHHHHHhhcc
Q 015513 325 VSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQAD--CEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 325 ~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~--~~~~~k~~A~~ll~~l~~~ 388 (405)
.+...+..|+.+|.+++..+ .+....+++.|++++|+.+++.. ....+.+.|...|+.+-++
T Consensus 720 ~d~~vq~~A~~aL~NL~~~s--~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 720 PSPAVQHRGIVIILNMINAG--EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp SSHHHHHHHHHHHHHHHTTC--HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCC--HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 67788999999999998743 45789999999999999999754 3688999999999988875
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.94 E-value=9.1e-26 Score=229.28 Aligned_cols=285 Identities=11% Similarity=0.096 Sum_probs=235.4
Q ss_pred hHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccC-CCchhHHHHHHHHHhcCCCc
Q 015513 92 KDQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKG-NKTTGLEEALRILSLVWSPS 168 (405)
Q Consensus 92 ~~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~-~~~~~~e~A~~~L~~L~~~~ 168 (405)
.+.++.|+..+.+ ...+..|+++|.+++.+++.+|..+.+.|++++|+.+|...+.. .....+..++++|.+++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 4567888888854 48899999999999999999999999999999999999754322 12234788999999998776
Q ss_pred hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHH
Q 015513 169 NENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKS 248 (405)
Q Consensus 169 ~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~ 248 (405)
..........+ ++|.|+.+|.+ ++.+++..|+++|.+|+...+.....+ ...|+++.|+.+|.++ +..++..
T Consensus 241 ~~~~~~~~~~~--~lp~L~~LL~~----~~~~v~~~a~~aL~~l~~~~~~~~~~v-~~~g~i~~Lv~lL~~~-~~~v~~~ 312 (529)
T 3tpo_A 241 NPAPPLDAVEQ--ILPTLVRLLHH----NDPEVLADSCWAISYLTDGPNERIEMV-VKKGVVPQLVKLLGAT-ELPIVTP 312 (529)
T ss_dssp TTCCCHHHHHH--HHHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHHHHHHH-HTTTCHHHHHHHHTCS-CHHHHHH
T ss_pred cchhhHHHHhh--HHHHHHHHhcC----CcHHHHHHHHHHHHHhhhhhhhhHHHH-HhccchHHHHHHhcCC-ChhHHHH
Confidence 44444444445 89999999998 899999999999999998776665555 5789999999999998 8999999
Q ss_pred HHHHHHHhccCC-chhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccCh
Q 015513 249 GLHVLLQACPMG-GNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSP 327 (405)
Q Consensus 249 a~~aL~~L~~~~-~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~ 327 (405)
++++|.||+... .++..+++.|++++|+.+|.+. +..+++.|+++|.+|+.+.......+.+.|++|.|+.++...+.
T Consensus 313 a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~ 391 (529)
T 3tpo_A 313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 391 (529)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCH
Confidence 999999999854 5777889999999999999885 77899999999999998655544444557899999997776677
Q ss_pred hhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 328 ATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 328 ~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
..+..|+.+|.+++.... .+.+..+++.|++++|+.+|.+ .++.++..+...|..+-+
T Consensus 392 ~v~~~A~~aL~nl~~~~~-~~~~~~l~~~g~i~~L~~LL~~-~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 392 KTQKAAAWAITNYTSGGT-VEQIVYLVHCGIIEPLMNLLSA-KDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHHHHHHHHHSC-HHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC-HHHHHHHHHCcCHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 889999999999987643 4578889999999999999985 467778888777776544
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=2e-24 Score=219.16 Aligned_cols=282 Identities=16% Similarity=0.090 Sum_probs=235.9
Q ss_pred hHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhH-HhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCc
Q 015513 92 KDQVRKLVRDLDS--GHLRISTLKKMEALAMENE-RNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPS 168 (405)
Q Consensus 92 ~~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~-~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~ 168 (405)
...++.|++.+.+ +..+..|++.|+.++.... .++..+++.|+|+.|+.+|.+.+ +...++.|+++|.+++.+.
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~---~~~v~~~A~~~L~~l~~~~ 149 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED---FPQLQFEAAWALTNIASGT 149 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTT---CHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCC---CHHHHHHHHHHHHHHhCCC
Confidence 4568899999854 4889999999999876544 67888999999999999997542 1356899999999999987
Q ss_pred hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhcc-chhhhcccHHHHHHHHHHHhhcCChHHHH
Q 015513 169 NENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASK-GLLESTLNLDFFKEMVKLLKENISQQATK 247 (405)
Q Consensus 169 ~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~-~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~ 247 (405)
++++..+.+.| +++.|+.+|.+ ++..+++.|+++|.+|+..... +..+. ..|++++|+.+|....++.++.
T Consensus 150 ~~~~~~~~~~g--~i~~L~~lL~~----~~~~v~~~a~~aL~~l~~~~~~~~~~i~--~~g~l~~Ll~lL~~~~~~~v~~ 221 (528)
T 4b8j_A 150 SENTKVVIDHG--AVPIFVKLLGS----SSDDVREQAVWALGNVAGDSPKCRDLVL--ANGALLPLLAQLNEHTKLSMLR 221 (528)
T ss_dssp HHHHHHHHHTT--HHHHHHHHTTC----SCHHHHHHHHHHHHHHHHTCHHHHHHHH--HTTCHHHHHHTCCTTCCHHHHH
T ss_pred HHHHHHHHhCC--cHHHHHHHhcC----CCHHHHHHHHHHHHHHhCCChhhHHHHH--HCCcHHHHHHHHhcCCCHHHHH
Confidence 78888888888 99999999998 8999999999999999976443 44443 6799999999995444899999
Q ss_pred HHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccCh
Q 015513 248 SGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSP 327 (405)
Q Consensus 248 ~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~ 327 (405)
.++++|.+|+.+..+....+..|++|.|+.+|.+. +..++..|+++|.+|+...+.+...+...|+++.|+++|...+.
T Consensus 222 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~ 300 (528)
T 4b8j_A 222 NATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 300 (528)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCCh
Confidence 99999999999866666666799999999999885 78899999999999998777665555557999999996665567
Q ss_pred hhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 328 ATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 328 ~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
..++.|+.+|.+|+... +...+.+++.|+++.|+.+|+.+.++.++..|+++|..+..
T Consensus 301 ~v~~~a~~~L~nl~~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 301 SVLIPALRTVGNIVTGD--DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HHHHHHHHHHHHHTTSC--HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCC--HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 88899999999999754 45788889999999999999954488899999999998875
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=1.9e-24 Score=197.12 Aligned_cols=242 Identities=17% Similarity=0.119 Sum_probs=208.3
Q ss_pred chHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHH
Q 015513 133 FVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMV 212 (405)
Q Consensus 133 g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L 212 (405)
|+|+.|+.+|.+.+ .+.+..|+++|.+++..+++++..+.+.| +++.|+.+|++ ++.+++..|+++|.+|
T Consensus 2 ~~i~~L~~~L~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~~----~~~~v~~~a~~~L~~l 71 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD----SETQKEAARDLAEIASGPASAIKAIVDAG--GVEVLVKLLTS----TDSEVQKEAARALANI 71 (252)
T ss_dssp CHHHHHHHHTTCSC----HHHHHHHHHHHHHHHTSCHHHHHHHHHTT--HHHHHHHHTTC----SCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCCC----HHHHHHHHHHHHHHhcCCcHHHHHHHHCC--CHHHHHHHHhC----CCHHHHHHHHHHHHHH
Confidence 78999999998643 45689999999999988777888888888 99999999998 8899999999999999
Q ss_pred Hhh-hccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc-CCchhHHHHhhcchHHHHHHhhcCCCCCcHHH
Q 015513 213 LEL-ASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP-MGGNRVKITEANAVFELIELELTKPEKSTTEL 290 (405)
Q Consensus 213 ~~~-~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~-~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~ 290 (405)
+.. ++.+..+. +.|+++.|+++|+++ +++++..|+++|.+|+. +++++..+++.|++|.|+++|.+. +..++..
T Consensus 72 ~~~~~~~~~~~~--~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~ 147 (252)
T 4hxt_A 72 ASGPDEAIKAIV--DAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKE 147 (252)
T ss_dssp TTSCHHHHHHHH--HTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHH
T ss_pred HcCChHHHHHHH--HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHH
Confidence 987 55555554 779999999999987 89999999999999995 667899999999999999999985 7889999
Q ss_pred HHHHHHHHhcCHhhH-HHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhcc
Q 015513 291 IFNLLAQLCSCADGR-LKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQAD 369 (405)
Q Consensus 291 a~~~L~~L~~~~~~~-~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~ 369 (405)
++++|.+|+...+.. ..+. +.|+++.|++++...+...++.++.+|.+|+.. ++..++.+.+.|+++.|+.+++ +
T Consensus 148 a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~i~~L~~ll~-~ 223 (252)
T 4hxt_A 148 AARALANIASGPDEAIKAIV-DAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PTSAIKAIVDAGGVEVLQKLLT-S 223 (252)
T ss_dssp HHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--BHHHHHHHHHTTHHHHHHHGGG-C
T ss_pred HHHHHHHHHcCCHHHHHHHH-HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHC-C
Confidence 999999999865544 5554 478999999966555668899999999999964 3457889999999999999998 4
Q ss_pred CcHHHHHHHHHHHHHhhcccCCC
Q 015513 370 CEKYLKDRAKEILRLHSNVWNNS 392 (405)
Q Consensus 370 ~~~~~k~~A~~ll~~l~~~~~~~ 392 (405)
.++.+|+.|..+|..+.....+.
T Consensus 224 ~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 224 TDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp SCHHHHHHHHHHHHHHHHTCBCC
T ss_pred CcHHHHHHHHHHHHHHHcCCCcc
Confidence 67899999999999998865443
No 17
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=1.3e-24 Score=198.79 Aligned_cols=236 Identities=17% Similarity=0.208 Sum_probs=201.4
Q ss_pred HHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchh
Q 015513 93 DQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNE 170 (405)
Q Consensus 93 ~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~ 170 (405)
.....++..+.+ ++.+..|++.|+++...++.++..+++.|+++.|+.+|++.+ ...++.|+++|.+++.++++
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN----EQILQEALWALSNIASGGNE 87 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC----HHHHHHHHHHHHHHTTSCHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC----HHHHHHHHHHHHHHhcCCHH
Confidence 346677777744 589999999998777668888999999999999999998643 45689999999999987778
Q ss_pred hHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHH
Q 015513 171 NKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGL 250 (405)
Q Consensus 171 ~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 250 (405)
++..+.+.| +++.|+.+|++ ++.+++..|+++|.+|+...+.+.... .+.|+++.|+++|+++ ++.+++.|+
T Consensus 88 ~~~~i~~~g--~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~lL~~~-~~~v~~~a~ 159 (252)
T 4db8_A 88 QIQAVIDAG--ALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAV-IDAGALPALVQLLSSP-NEQILQEAL 159 (252)
T ss_dssp HHHHHHHTT--HHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHH-HHTTHHHHHHHGGGCS-CHHHHHHHH
T ss_pred HHHHHHHcC--CHHHHHHHHcC----CCHHHHHHHHHHHHHhhcCCchHHHHH-HHCCCHHHHHHHHhCC-CHHHHHHHH
Confidence 899999888 99999999998 899999999999999998887773333 4779999999999988 899999999
Q ss_pred HHHHHhccCC-chhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcC-HhhHHHHHhcccchHHHHHHHHccChh
Q 015513 251 HVLLQACPMG-GNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSC-ADGRLKFREHAGAIAMVTKRLLRVSPA 328 (405)
Q Consensus 251 ~aL~~L~~~~-~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~~s~~ 328 (405)
++|.+|+... +++..+++.|++|.|+++|.++ +..+++.|+++|.+|+.. ++.+..+. +.|+++.|++++...+..
T Consensus 160 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~ 237 (252)
T 4db8_A 160 WALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVK-EAGALEKLEQLQSHENEK 237 (252)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHTTTTCSSSH
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCcHHHHHHHhCCCCHH
Confidence 9999999855 5777788999999999999986 788999999999999954 55566655 478999999966655678
Q ss_pred hhHHHHHHHHHhcc
Q 015513 329 TNDRAVHILSSISK 342 (405)
Q Consensus 329 ~~e~a~~~L~~L~~ 342 (405)
.++.|..+|.+|++
T Consensus 238 v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 238 IQKEAQEALEKLQS 251 (252)
T ss_dssp HHHTHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhc
Confidence 88999999988874
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.92 E-value=6e-24 Score=193.79 Aligned_cols=237 Identities=19% Similarity=0.147 Sum_probs=204.7
Q ss_pred HHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhh
Q 015513 94 QVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNEN 171 (405)
Q Consensus 94 ~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~ 171 (405)
+++.|+..+.+ ++.+..|++.|.+++..++.++..+++.|+++.|+.+|++.+ ...++.|+++|.+|+.++++.
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~ 78 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD----SEVQKEAARALANIASGPDEA 78 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC----HHHHHHHHHHHHHHTTSCHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC----HHHHHHHHHHHHHHHcCChHH
Confidence 57888888854 488999999999999988889999999999999999998642 456899999999999987788
Q ss_pred HHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHh-hhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHH
Q 015513 172 KALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLE-LASKGLLESTLNLDFFKEMVKLLKENISQQATKSGL 250 (405)
Q Consensus 172 ~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~-~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 250 (405)
+..+.+.| +++.|+.+|++ ++.+++..|+++|.+|+. .++.+..+. +.|+++.|+++|+++ ++.++..++
T Consensus 79 ~~~~~~~~--~i~~l~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~~l~~~-~~~~~~~a~ 149 (252)
T 4hxt_A 79 IKAIVDAG--GVEVLVKLLTS----TDSEVQKEAARALANIASGPDEAIKAIV--DAGGVEVLVKLLTST-DSEVQKEAA 149 (252)
T ss_dssp HHHHHHTT--HHHHHHHHTTC----SSHHHHHHHHHHHHHHTTSCHHHHHHHH--HTTHHHHHHHHTTCS-CHHHHHHHH
T ss_pred HHHHHHCC--CHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHH--HCCCHHHHHHHHcCC-CHHHHHHHH
Confidence 99999888 99999999998 899999999999999994 445555554 679999999999988 899999999
Q ss_pred HHHHHhccCC-chhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcC-HhhHHHHHhcccchHHHHHHHHccChh
Q 015513 251 HVLLQACPMG-GNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSC-ADGRLKFREHAGAIAMVTKRLLRVSPA 328 (405)
Q Consensus 251 ~aL~~L~~~~-~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~~s~~ 328 (405)
++|.+|+... +++..+++.|++|.|+.+|.+. +..+++.|+++|.+|+.. ++.+..+. +.|+++.|++++...+..
T Consensus 150 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~ 227 (252)
T 4hxt_A 150 RALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIV-DAGGVEVLQKLLTSTDSE 227 (252)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHH-HTTHHHHHHHGGGCSCHH
T ss_pred HHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHCCCcHH
Confidence 9999999855 4567889999999999999975 788999999999999984 44555554 478999999966655678
Q ss_pred hhHHHHHHHHHhcccCC
Q 015513 329 TNDRAVHILSSISKFSA 345 (405)
Q Consensus 329 ~~e~a~~~L~~L~~~~~ 345 (405)
.++.|..+|.+|+....
T Consensus 228 v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 228 VQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 89999999999987654
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.92 E-value=1.5e-23 Score=212.72 Aligned_cols=280 Identities=16% Similarity=0.129 Sum_probs=236.4
Q ss_pred hHHHHHHHHHhcc---hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCc
Q 015513 92 KDQVRKLVRDLDS---GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPS 168 (405)
Q Consensus 92 ~~~i~~lv~~l~~---~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~ 168 (405)
...++.|++.+.+ +..+..|++.|.+++..++.++..+++.|+++.|+.+|.+. +...++.|+++|.+|+.+.
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~----~~~v~~~a~~aL~~l~~~~ 191 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS----SDDVREQAVWALGNVAGDS 191 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC----CHHHHHHHHHHHHHHhCCC
Confidence 3567788888843 57899999999999998899999999999999999999863 2456999999999999887
Q ss_pred hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHH
Q 015513 169 NENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKS 248 (405)
Q Consensus 169 ~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~ 248 (405)
+.++..+.+.| +++.|+.+|.. +.+...+..|+++|.+|+.......... ..|+++.|+.+|.++ ++.++..
T Consensus 192 ~~~~~~i~~~g--~l~~Ll~lL~~---~~~~~v~~~a~~~L~~L~~~~~~~~~~~--~~~~l~~L~~lL~~~-~~~v~~~ 263 (528)
T 4b8j_A 192 PKCRDLVLANG--ALLPLLAQLNE---HTKLSMLRNATWTLSNFCRGKPQPSFEQ--TRPALPALARLIHSN-DEEVLTD 263 (528)
T ss_dssp HHHHHHHHHTT--CHHHHHHTCCT---TCCHHHHHHHHHHHHHHHCSSSCCCHHH--HTTHHHHHHHHTTCC-CHHHHHH
T ss_pred hhhHHHHHHCC--cHHHHHHHHhc---CCCHHHHHHHHHHHHHHHcCCCCCcHHH--HHHHHHHHHHHHCCC-CHHHHHH
Confidence 78888888887 99999999953 2789999999999999998754444444 369999999999987 8999999
Q ss_pred HHHHHHHhccCCchh-HHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHh-hHHHHHhcccchHHHHHHHHcc-
Q 015513 249 GLHVLLQACPMGGNR-VKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCAD-GRLKFREHAGAIAMVTKRLLRV- 325 (405)
Q Consensus 249 a~~aL~~L~~~~~n~-~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~~l~~~- 325 (405)
|+++|.+|+...+++ ..+++.|++|.|+.+|.+. +..+++.|+.+|.+|+...+ ....++ +.|+++.|+++|...
T Consensus 264 a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~ 341 (528)
T 4b8j_A 264 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDDAQTQCII-DHQALPCLLSLLTQNL 341 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHHHHHHHcCCHHHHHHHH-HhhhHHHHHHHHcCCC
Confidence 999999999877655 5678899999999999886 77899999999999998544 455554 478999999977666
Q ss_pred ChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 326 SPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 326 s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
+...+..|+.+|.+|+.. +......+++.|+++.|+.+|+. .++.+|..|+++|..+...
T Consensus 342 ~~~v~~~A~~~L~nl~~~--~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 342 KKSIKKEACWTISNITAG--NKDQIQAVINAGIIGPLVNLLQT-AEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp CHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTCHHHHHHHHHH-SCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCC--CHHHHHHHHHCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHcC
Confidence 667888999999999864 34577888999999999999985 4788999999999888765
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.91 E-value=3.9e-24 Score=195.73 Aligned_cols=237 Identities=17% Similarity=0.140 Sum_probs=199.4
Q ss_pred chHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHH
Q 015513 133 FVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMV 212 (405)
Q Consensus 133 g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L 212 (405)
...+.++..|.+.+ .+.+..|++.|.++...+++.+..+.+.| +++.|+.+|++ .+.+.+..|+++|.+|
T Consensus 12 ~~~~~~~~~L~s~~----~~~~~~a~~~L~~~l~~~~~~~~~~~~~g--~i~~L~~lL~~----~~~~v~~~a~~~L~~l 81 (252)
T 4db8_A 12 SELPQMTQQLNSDD----MQEQLSATRKFSQILSDGNEQIQAVIDAG--ALPALVQLLSS----PNEQILQEALWALSNI 81 (252)
T ss_dssp CSHHHHHHHHHSSC----SSHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHGGGC----SCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCCC----HHHHHHHHHHHHHHHcCCCchHHHHHHcC--cHHHHHHHHcC----CCHHHHHHHHHHHHHH
Confidence 45788899998653 34589999999775544566778888888 99999999998 7899999999999999
Q ss_pred Hhh-hccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchh-HHHHhhcchHHHHHHhhcCCCCCcHHH
Q 015513 213 LEL-ASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNR-VKITEANAVFELIELELTKPEKSTTEL 290 (405)
Q Consensus 213 ~~~-~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~-~~~v~~g~v~~Lv~lL~~~~~~~~~e~ 290 (405)
+.. ++++..+. +.|+++.|+++|+++ ++.+++.|+++|.+|+.+.+++ ..+++.|++|.|+++|.++ +..+++.
T Consensus 82 ~~~~~~~~~~i~--~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~ 157 (252)
T 4db8_A 82 ASGGNEQIQAVI--DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQE 157 (252)
T ss_dssp TTSCHHHHHHHH--HTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHH
T ss_pred hcCCHHHHHHHH--HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC-CHHHHHH
Confidence 974 45555554 679999999999998 8999999999999999999888 8899999999999999885 7789999
Q ss_pred HHHHHHHHhcCHh-hHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhcc
Q 015513 291 IFNLLAQLCSCAD-GRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQAD 369 (405)
Q Consensus 291 a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~ 369 (405)
|+++|.+|+...+ .+..+ .+.|+++.|++++...+...++.++.+|.+|+... +..+..+++.|+++.|+.+++.
T Consensus 158 a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~ll~~- 233 (252)
T 4db8_A 158 ALWALSNIASGGNEQIQAV-IDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQKQAVKEAGALEKLEQLQSH- 233 (252)
T ss_dssp HHHHHHHHTTSCHHHHHHH-HHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHTTTTC-
T ss_pred HHHHHHHHHcCChHHHHHH-HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHCCcHHHHHHHhCC-
Confidence 9999999998554 44454 44789999999665556688999999999999543 4578889999999999999984
Q ss_pred CcHHHHHHHHHHHHHhhc
Q 015513 370 CEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 370 ~~~~~k~~A~~ll~~l~~ 387 (405)
.++.+|+.|..+|..+.+
T Consensus 234 ~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 234 ENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp SSSHHHHTHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 577899999999987764
No 21
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=6e-24 Score=191.13 Aligned_cols=197 Identities=14% Similarity=0.084 Sum_probs=169.0
Q ss_pred HHHHHHHHHhcc--h--hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCc
Q 015513 93 DQVRKLVRDLDS--G--HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPS 168 (405)
Q Consensus 93 ~~i~~lv~~l~~--~--~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~ 168 (405)
-.++.+|+.+++ + +.+..|++.|++++..++.+|..|++.|+||+|+.+|++. +.+.++.|+++|.||+.++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~----~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ----NEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC----CHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHhCC
Confidence 358889999854 3 5678899999999999999999999999999999999864 2456999999999999877
Q ss_pred hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHh---hc-----
Q 015513 169 NENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLK---EN----- 240 (405)
Q Consensus 169 ~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~---~~----- 240 (405)
+++|..|.+.| +||.|+.+|++ .++.+++++|+.+|++|+..++++..++ + +++++|++++. ++
T Consensus 84 ~~nk~~I~~~G--aI~~Lv~lL~~---~~~~~~~e~a~~aL~nLS~~~~~k~~i~--~-~~i~~Lv~ll~~p~sG~~~~~ 155 (233)
T 3tt9_A 84 NDNKLEVAELN--GVPRLLQVLKQ---TRDLETKKQITGLLWNLSSNDKLKNLMI--T-EALLTLTENIIIPFSGWPEGD 155 (233)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHH---CCCHHHHHHHHHHHHHHHTSGGGHHHHH--H-HHHHHHCCCCCHHHHCCCGGG
T ss_pred HHHHHHHHHcC--CHHHHHHHHcc---CCCHHHHHHHHHHHHHHHcChhhHHHHH--h-ccHHHHHHHHhccccCCcccc
Confidence 78999999998 99999999985 2689999999999999999998888886 4 67999999763 11
Q ss_pred -------CChHHHHHHHHHHHHhccCC-chhHHHHhh-cchHHHHHHhhcC-----CCCCcHHHHHHHHHHHhcC
Q 015513 241 -------ISQQATKSGLHVLLQACPMG-GNRVKITEA-NAVFELIELELTK-----PEKSTTELIFNLLAQLCSC 301 (405)
Q Consensus 241 -------~~~~~~~~a~~aL~~L~~~~-~n~~~~v~~-g~v~~Lv~lL~~~-----~~~~~~e~a~~~L~~L~~~ 301 (405)
.+.+++++|+.+|+||++.+ ++|+.|.+. |+|+.|+.+++.+ .+...+|+++.+|.||+..
T Consensus 156 ~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 156 YPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 15689999999999999855 899999985 7899999999863 2456799999999999853
No 22
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=2.8e-24 Score=193.27 Aligned_cols=199 Identities=16% Similarity=0.130 Sum_probs=167.7
Q ss_pred hHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHH
Q 015513 134 VVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVL 213 (405)
Q Consensus 134 ~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~ 213 (405)
.+|.||.+|.+.+.. .+.+..|++.|.+|+..+++++..|.+.| +||.||.+|++ ++.++|+.|+++|.+|+
T Consensus 9 ~i~~lV~lL~s~~~~--~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G--~Ip~LV~lL~s----~~~~vq~~Aa~aL~nLa 80 (233)
T 3tt9_A 9 TLERAVSMLEADHML--PSRISAAATFIQHECFQKSEARKRVNQLR--GILKLLQLLKV----QNEDVQRAVCGALRNLV 80 (233)
T ss_dssp CHHHHHHTCCSSCCC--HHHHHHHHHHHHHHHHHCHHHHHHHHHTT--HHHHHHHGGGC----CCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCch--HHHHHHHHHHHHHHHcCCcHHHHHHHHcC--CHHHHHHHHcC----CCHHHHHHHHHHHHHHH
Confidence 589999999865321 24578899999999987778999999998 99999999998 89999999999999999
Q ss_pred hh-hccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhh---cC-------
Q 015513 214 EL-ASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELEL---TK------- 282 (405)
Q Consensus 214 ~~-~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~---~~------- 282 (405)
.. ++++..+. +.|+|++|+++|++..+.++++.|+.+|+||+..+++|..+++. ++|+|++++. ++
T Consensus 81 ~~~~~nk~~I~--~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~ 157 (233)
T 3tt9_A 81 FEDNDNKLEVA--ELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYP 157 (233)
T ss_dssp TTCHHHHHHHH--HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCC
T ss_pred hCCHHHHHHHH--HcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccc
Confidence 74 56777776 78999999999985338899999999999999999999999874 6999998763 12
Q ss_pred -----CCCCcHHHHHHHHHHHhc-CHhhHHHHHhcccchHHHHHHHHcc------ChhhhHHHHHHHHHhccc
Q 015513 283 -----PEKSTTELIFNLLAQLCS-CADGRLKFREHAGAIAMVTKRLLRV------SPATNDRAVHILSSISKF 343 (405)
Q Consensus 283 -----~~~~~~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~------s~~~~e~a~~~L~~L~~~ 343 (405)
.+..++++|.++|.+|+. +.++|.++.+..|+|+.||.++... ++..+|+|+.+|++|+..
T Consensus 158 ~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 158 KANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 134688999999999987 5689999988888899999966442 346789999999999964
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.91 E-value=5.3e-23 Score=208.83 Aligned_cols=279 Identities=13% Similarity=0.082 Sum_probs=233.4
Q ss_pred hHHHHHHHHHhcc---hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCc
Q 015513 92 KDQVRKLVRDLDS---GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPS 168 (405)
Q Consensus 92 ~~~i~~lv~~l~~---~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~ 168 (405)
...++.|++.+.+ +..+..|++.|.+++..++.++..+++.|+++.|+.+|.+. +...++.|+++|.+|+.+.
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~----~~~vr~~A~~aL~~l~~~~ 204 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG----SVEVKEQAIWALGNVAGDS 204 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhCCC
Confidence 3457778888743 47899999999999998888899999999999999999864 2456999999999999887
Q ss_pred hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhh-ccchhhhcccHHHHHHHHHHHhhcCChHHHH
Q 015513 169 NENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELA-SKGLLESTLNLDFFKEMVKLLKENISQQATK 247 (405)
Q Consensus 169 ~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~-~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~ 247 (405)
++++..+...| +++.|+.+|.+ .+.+++..|+++|.+|+... ....... ..|+++.|+.+|.++ ++.++.
T Consensus 205 ~~~~~~~~~~~--~l~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~--~~~~l~~L~~lL~~~-d~~v~~ 275 (530)
T 1wa5_B 205 TDYRDYVLQCN--AMEPILGLFNS----NKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAKLIYSM-DTETLV 275 (530)
T ss_dssp HHHHHHHHHTT--CHHHHHHGGGS----CCHHHHHHHHHHHHHHHCCSSSCCCHHH--HGGGHHHHHHHTTCC-CHHHHH
T ss_pred ccchHHHHHcC--cHHHHHHHhcc----CCHHHHHHHHHHHHHHhCCCCCCCcHHH--HHhHHHHHHHHHcCC-CHHHHH
Confidence 78888888887 99999999998 88999999999999999765 3333333 468999999999987 899999
Q ss_pred HHHHHHHHhccCC-chhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHh-hHHHHHhcccchHHHHHHHHcc
Q 015513 248 SGLHVLLQACPMG-GNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCAD-GRLKFREHAGAIAMVTKRLLRV 325 (405)
Q Consensus 248 ~a~~aL~~L~~~~-~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~~l~~~ 325 (405)
.|+++|.+|+... +....+++.|++|.|+.+|.+. +..+++.|+.+|.+|+...+ ....++ +.|+++.|+++|...
T Consensus 276 ~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~ 353 (530)
T 1wa5_B 276 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALRAVGNIVTGNDLQTQVVI-NAGVLPALRLLLSSP 353 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHHHHHHHHHHHcCCHHHHHHHH-HcchHHHHHHHHcCC
Confidence 9999999999865 4677788899999999999875 77899999999999997544 444444 468999999966555
Q ss_pred ChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 326 SPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 326 s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
....++.|+.+|.+|+..+ ....+.+++.|+++.|+.+|+ +.++.+|..|.++|..+...
T Consensus 354 ~~~vr~~A~~aL~~l~~~~--~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 354 KENIKKEACWTISNITAGN--TEQIQAVIDANLIPPLVKLLE-VAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTCHHHHHHHHH-HSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHh-cCCHHHHHHHHHHHHHHHhc
Confidence 5677888899999988643 346778889999999999998 45788999999999888654
No 24
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.91 E-value=1.2e-22 Score=205.38 Aligned_cols=282 Identities=12% Similarity=0.060 Sum_probs=230.6
Q ss_pred hHHHHHHHHHhc---chhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCc
Q 015513 92 KDQVRKLVRDLD---SGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPS 168 (405)
Q Consensus 92 ~~~i~~lv~~l~---~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~ 168 (405)
...++.|++.+. +...+..|+..|++++.. +.++..+.+.|+++.|+.+|++.+ ...+..|+++|.+|+.++
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~ 132 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPV----DSVLFYAITTLHNLLLHQ 132 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSC----HHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCC----HHHHHHHHHHHHHHhcCC
Confidence 357888888883 357899999999999875 459999999999999999997642 456899999999999876
Q ss_pred hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhh-hccchhhhcccHHHHHHHHHHHhhcCChHHHH
Q 015513 169 NENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLEL-ASKGLLESTLNLDFFKEMVKLLKENISQQATK 247 (405)
Q Consensus 169 ~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~-~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~ 247 (405)
+..+..+.+.| +++.|+.+|++ ++.+.+..++.+|.+++.. ++++..+. ..|+++.|+++|+++.+...+.
T Consensus 133 ~~~~~~i~~~g--~i~~L~~ll~~----~~~~~~~~~~~~L~~la~~~~~~~~~i~--~~~~i~~L~~ll~~~~~~~~~~ 204 (529)
T 1jdh_A 133 EGAKMAVRLAG--GLQKMVALLNK----TNVKFLAITTDCLQILAYGNQESKLIIL--ASGGPQALVNIMRTYTYEKLLW 204 (529)
T ss_dssp TTHHHHHHHHT--HHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCHHHHHHHH--HTTHHHHHHHHHHHCCCHHHHH
T ss_pred cchHHHHHHcC--CHHHHHHHHhc----CCHHHHHHHHHHHHHHHhCCHHHHHHHH--HCCCHHHHHHHHHhCChHHHHH
Confidence 67788888887 99999999998 8899999999999999975 45555555 6699999999999875667778
Q ss_pred HHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcC--------------------------------------CCCCcHH
Q 015513 248 SGLHVLLQACPMGGNRVKITEANAVFELIELELTK--------------------------------------PEKSTTE 289 (405)
Q Consensus 248 ~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~--------------------------------------~~~~~~e 289 (405)
.+..+|++|+.+++++..+++.|+++.|++++.++ .+..+++
T Consensus 205 ~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 284 (529)
T 1jdh_A 205 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVT 284 (529)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHH
Confidence 89999999999999999999989887777666432 2456778
Q ss_pred HHHHHHHHHhcC-HhhHHHHHhcccchHHHHHHHHccC--hhhhHHHHHHHHHhcccCCC-HHHHHHHHhcChHHHHHHH
Q 015513 290 LIFNLLAQLCSC-ADGRLKFREHAGAIAMVTKRLLRVS--PATNDRAVHILSSISKFSAT-YEVVLEMLSVGAVSKLCMV 365 (405)
Q Consensus 290 ~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~~s--~~~~e~a~~~L~~L~~~~~~-~~~~~~~~~~G~v~~Ll~l 365 (405)
.|+++|.+|+.. ++++..+.. .|+++.|++++...+ ...++.++.+|++|+...++ +..+..+++.|+++.|+.+
T Consensus 285 ~a~~~L~~L~~~~~~~~~~~~~-~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~l 363 (529)
T 1jdh_A 285 CAAGILSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 363 (529)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHH
Confidence 888888888875 457777655 789999999765433 47789999999999876554 3367788899999999999
Q ss_pred HhccCcHHHHHHHHHHHHHhhc
Q 015513 366 TQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 366 l~~~~~~~~k~~A~~ll~~l~~ 387 (405)
|+.+.++.++..|.++|..+..
T Consensus 364 L~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 364 LHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp TSTTCCHHHHHHHHHHHHHHTT
T ss_pred hccccchHHHHHHHHHHHHHhc
Confidence 9866556888899999888875
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=2.6e-22 Score=198.68 Aligned_cols=279 Identities=12% Similarity=0.086 Sum_probs=231.7
Q ss_pred HHHHHHHHHhcc---hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCch
Q 015513 93 DQVRKLVRDLDS---GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSN 169 (405)
Q Consensus 93 ~~i~~lv~~l~~---~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~ 169 (405)
..++.|++.+.+ +..+..|++.|.+++..++.++..+++.|+++.|+.+|++. +...++.|+++|.+++.+.+
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~vr~~a~~~L~~l~~~~~ 139 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE----FEDVQEQAVWALGNIAGDST 139 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHccCCH
Confidence 567788887743 48899999999999988788888889999999999999854 34569999999999998877
Q ss_pred hhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhh-ccchhhhcccHHHHHHHHHHHhhcCChHHHHH
Q 015513 170 ENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELA-SKGLLESTLNLDFFKEMVKLLKENISQQATKS 248 (405)
Q Consensus 170 ~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~-~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~ 248 (405)
+.+..+.+.| +++.|+.++.+ +.+..++..|+++|.+|+... ....... ..++++.|+++++++ ++.++..
T Consensus 140 ~~~~~~~~~~--~i~~L~~~l~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~l~~L~~~l~~~-~~~v~~~ 211 (450)
T 2jdq_A 140 MCRDYVLDCN--ILPPLLQLFSK---QNRLTMTRNAVWALSNLCRGKSPPPEFAK--VSPCLNVLSWLLFVS-DTDVLAD 211 (450)
T ss_dssp HHHHHHHHTT--CHHHHHHHTTS---CCCHHHHHHHHHHHHHHHCCSSSCCCGGG--TGGGHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHHHHHCC--CHHHHHHHhcC---CCCHHHHHHHHHHHHHHhCCCCCCCCHHH--HHHHHHHHHHHHccC-CHHHHHH
Confidence 7888888877 99999999995 268899999999999999764 2222222 268999999999987 8999999
Q ss_pred HHHHHHHhccCC-chhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccCh
Q 015513 249 GLHVLLQACPMG-GNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSP 327 (405)
Q Consensus 249 a~~aL~~L~~~~-~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~ 327 (405)
++++|.+|+.+. +++..+++.|++|.|+.+|.+. +..+++.|+.+|.+|+...+.....+.+.|+++.|++++...+.
T Consensus 212 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 290 (450)
T 2jdq_A 212 ACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN-DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKE 290 (450)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC-chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCH
Confidence 999999999865 5777788899999999999875 77899999999999998765544433446899999996655556
Q ss_pred hhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 328 ATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 328 ~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
..+..|+.+|.+|+..+ ....+.+++.|+++.|+.+|+ +.++.+|..|.++|..+..
T Consensus 291 ~vr~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 291 SIKKEACWTISNITAGN--RAQIQTVIDANIFPALISILQ-TAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHHH-HSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHh-cCCHHHHHHHHHHHHHHHc
Confidence 77888999999998643 346778888999999999998 4578899999999887765
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.90 E-value=1.1e-22 Score=206.49 Aligned_cols=278 Identities=14% Similarity=0.079 Sum_probs=231.5
Q ss_pred HHHHHHHHHhcc--hhHHHHHHHHHHHHHHh-hHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCch
Q 015513 93 DQVRKLVRDLDS--GHLRISTLKKMEALAME-NERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSN 169 (405)
Q Consensus 93 ~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~-~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~ 169 (405)
..++.|+..+.+ +..+..|+..|+.+... +..++..+++.|+++.|+.+|.+.+ +...+..|+++|.+++...+
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~---~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ---PEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS---CHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCC---CHHHHHHHHHHHHHHhCCCH
Confidence 458888888854 48889999999988653 3456678889999999999997541 24568999999999998877
Q ss_pred hhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhh-ccchhhhcccHHHHHHHHHHHhhcCChHHHHH
Q 015513 170 ENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELA-SKGLLESTLNLDFFKEMVKLLKENISQQATKS 248 (405)
Q Consensus 170 ~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~-~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~ 248 (405)
+.+..+.+.| +++.|+.+|.+ .+.++++.|+++|.+|+... ..+..+. ..|+++.|+.+|.+. ++.++..
T Consensus 164 ~~~~~~~~~g--~i~~Lv~lL~~----~~~~vr~~A~~aL~~l~~~~~~~~~~~~--~~~~l~~L~~ll~~~-~~~v~~~ 234 (530)
T 1wa5_B 164 AQTKVVVDAD--AVPLFIQLLYT----GSVEVKEQAIWALGNVAGDSTDYRDYVL--QCNAMEPILGLFNSN-KPSLIRT 234 (530)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHH----CCHHHHHHHHHHHHHHHTTCHHHHHHHH--HTTCHHHHHHGGGSC-CHHHHHH
T ss_pred HHHHHHHHCC--CHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCccchHHHH--HcCcHHHHHHHhccC-CHHHHHH
Confidence 7888888787 99999999998 89999999999999999764 3444444 569999999999986 8999999
Q ss_pred HHHHHHHhccCC-chhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCH-hhHHHHHhcccchHHHHHHHHccC
Q 015513 249 GLHVLLQACPMG-GNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCA-DGRLKFREHAGAIAMVTKRLLRVS 326 (405)
Q Consensus 249 a~~aL~~L~~~~-~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~~l~~~s 326 (405)
|+++|.+|+.+. ++.......|++|.|+.+|.+. +..++..|+++|.+|+... +.+..++. .|+++.|++++...+
T Consensus 235 a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~ 312 (530)
T 1wa5_B 235 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHES 312 (530)
T ss_dssp HHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSC
T ss_pred HHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCC
Confidence 999999999876 5666677789999999999885 7789999999999999764 45555544 689999999665556
Q ss_pred hhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 327 PATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 327 ~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
...++.|+.+|.+|+... +...+.+++.|+++.|+.+|+. ....+|..|.++|..+..
T Consensus 313 ~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~lL~~-~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 313 TLVQTPALRAVGNIVTGN--DLQTQVVINAGVLPALRLLLSS-PKENIKKEACWTISNITA 370 (530)
T ss_dssp HHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHcCC--HHHHHHHHHcchHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence 678899999999998654 3467788899999999999985 478899999999998875
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.90 E-value=1.5e-22 Score=210.36 Aligned_cols=283 Identities=12% Similarity=0.062 Sum_probs=230.9
Q ss_pred hHHHHHHHHHhc---chhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCc
Q 015513 92 KDQVRKLVRDLD---SGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPS 168 (405)
Q Consensus 92 ~~~i~~lv~~l~---~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~ 168 (405)
...++.|++.+. +.+.+..|+..|++++... .++..+.+.|+++.|+.+|++.+ ...+..|+++|.+|+...
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~----~~v~~~A~~aL~nL~~~~ 129 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPV----DSVLFYAITTLHNLLLHQ 129 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH-HHHHHHHTTTHHHHHHHHTTCSS----HHHHHHHHHHHHHHHHHS
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh-hhHHHHHHcCCHHHHHHHHhCCC----HHHHHHHHHHHHHHHhCc
Confidence 356888888884 3488899999999998754 59999999999999999997642 456899999999999776
Q ss_pred hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHh-hhccchhhhcccHHHHHHHHHHHhhcCChHHHH
Q 015513 169 NENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLE-LASKGLLESTLNLDFFKEMVKLLKENISQQATK 247 (405)
Q Consensus 169 ~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~-~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~ 247 (405)
+..+..+.+.| +++.|+.+|++ ++...+..++.+|.+|+. .++++..+. +.|+++.|+++|++......+.
T Consensus 130 ~~~~~~v~~~g--~i~~Lv~lL~~----~~~~~~~~a~~~L~~La~~~~~~~~~i~--~~g~v~~Lv~lL~~~~~~~~~~ 201 (644)
T 2z6h_A 130 EGAKMAVRLAG--GLQKMVALLNK----TNVKFLAITTDCLQILAYGNQESKLIIL--ASGGPQALVNIMRTYTYEKLLW 201 (644)
T ss_dssp TTHHHHHHHTT--HHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCHHHHHHHH--HTTHHHHHHHHHTTCCCHHHHH
T ss_pred chhHHHHHHCC--ChHHHHHHHCc----CCHHHHHHHHHHHHHHHhcCcHHHHHHH--HcCChHHHHHHHHcCChHHHHH
Confidence 67788888888 99999999998 788888888899999996 456666665 6799999999999875667889
Q ss_pred HHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcC--------------------------------------CCCCcHH
Q 015513 248 SGLHVLLQACPMGGNRVKITEANAVFELIELELTK--------------------------------------PEKSTTE 289 (405)
Q Consensus 248 ~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~--------------------------------------~~~~~~e 289 (405)
.++.+|++|+.+++++..+++.|+++.|++++.++ .+..+++
T Consensus 202 ~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~ 281 (644)
T 2z6h_A 202 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVT 281 (644)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHH
Confidence 99999999999999999999999888887665431 2456778
Q ss_pred HHHHHHHHHhcC-HhhHHHHHhcccchHHHHHHHHccC--hhhhHHHHHHHHHhcccCCCH-HHHHHHHhcChHHHHHHH
Q 015513 290 LIFNLLAQLCSC-ADGRLKFREHAGAIAMVTKRLLRVS--PATNDRAVHILSSISKFSATY-EVVLEMLSVGAVSKLCMV 365 (405)
Q Consensus 290 ~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~~s--~~~~e~a~~~L~~L~~~~~~~-~~~~~~~~~G~v~~Ll~l 365 (405)
.|+++|.+|+.. .+++..++. .|+++.|++++...+ ...++.|+.+|.+|+...++. ..+..+++.|+++.|+.+
T Consensus 282 ~a~~aL~~L~~~~~~~~~~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~l 360 (644)
T 2z6h_A 282 CAAGILSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 360 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHH
Confidence 888888888875 456666655 789999999776543 578899999999998765543 345568889999999999
Q ss_pred HhccCcHHHHHHHHHHHHHhhcc
Q 015513 366 TQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 366 l~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
|+++..+.+++.|.++|..+...
T Consensus 361 L~~~~~~~v~~~a~~~L~nLa~~ 383 (644)
T 2z6h_A 361 LHPPSHWPLIKATVGLIRNLALC 383 (644)
T ss_dssp TSTTCCHHHHHHHHHHHHHHTTS
T ss_pred hCccCchHHHHHHHHHHHHHccC
Confidence 98665678899999999888753
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.89 E-value=9e-22 Score=198.98 Aligned_cols=282 Identities=15% Similarity=0.088 Sum_probs=226.8
Q ss_pred chHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHH-hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCC
Q 015513 91 NKDQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEE-AFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSP 167 (405)
Q Consensus 91 ~~~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~-~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~ 167 (405)
....++.|+..+++ +..+..|+..|.+++.++ .++..+.+ .|+++.|+++|.+.. +...+..|+.+|.+|+.+
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~~~---~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTN---DVETARCTAGTLHNLSHH 90 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTTS
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhcCC---CHHHHHHHHHHHHHHHcC
Confidence 35568888888854 588999999999999754 56767765 599999999997531 235689999999999987
Q ss_pred chhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHH
Q 015513 168 SNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATK 247 (405)
Q Consensus 168 ~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~ 247 (405)
+ +++..+.+.| +++.|+.+|++ +++.++..|+++|.+|+...++....+ .+.|+++.|+++|+++ +++.+.
T Consensus 91 ~-~~~~~i~~~g--~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~g~i~~L~~ll~~~-~~~~~~ 161 (529)
T 1jdh_A 91 R-EGLLAIFKSG--GIPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGAKMAV-RLAGGLQKMVALLNKT-NVKFLA 161 (529)
T ss_dssp H-HHHHHHHHTT--HHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCTTHHHHH-HHHTHHHHHHHGGGCC-CHHHHH
T ss_pred c-hhHHHHHHcC--CHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcchHHHH-HHcCCHHHHHHHHhcC-CHHHHH
Confidence 5 5888888888 99999999998 889999999999999998754444333 4789999999999987 889999
Q ss_pred HHHHHHHHhccC-CchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHc--
Q 015513 248 SGLHVLLQACPM-GGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLR-- 324 (405)
Q Consensus 248 ~a~~aL~~L~~~-~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-- 324 (405)
.++.+|.+++.. ++++..+++.|+++.|+++|.++.+...++.++.+|.+|+.+++++..++. .|+++.|++++..
T Consensus 162 ~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~~~~L~~ll~~~~ 240 (529)
T 1jdh_A 162 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPS 240 (529)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSSC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhCCC
Confidence 999999999984 679999999999999999999864456777899999999998888888765 5677766653322
Q ss_pred -------------------------------------cChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHh
Q 015513 325 -------------------------------------VSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQ 367 (405)
Q Consensus 325 -------------------------------------~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~ 367 (405)
.+...++.+..+|.+|+... .+.+..+.+.|+++.|+.+|.
T Consensus 241 ~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~--~~~~~~~~~~~~v~~L~~ll~ 318 (529)
T 1jdh_A 241 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVL 318 (529)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC--HHHHHHHHHTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHHHH
Confidence 23345666777777777543 457888999999999999998
Q ss_pred ccC-cHHHHHHHHHHHHHhhcc
Q 015513 368 ADC-EKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 368 ~~~-~~~~k~~A~~ll~~l~~~ 388 (405)
... .+.+++.|..+|..+...
T Consensus 319 ~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 319 RAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSS
T ss_pred ccCCHHHHHHHHHHHHHHHHcC
Confidence 633 478999999999988653
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.89 E-value=1.3e-21 Score=203.34 Aligned_cols=281 Identities=16% Similarity=0.101 Sum_probs=228.1
Q ss_pred chHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHH-hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCC
Q 015513 91 NKDQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEE-AFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSP 167 (405)
Q Consensus 91 ~~~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~-~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~ 167 (405)
....++.|+..+.+ +..+..|+..|.+++.+. .++..+.. .|+++.|+++|.+. .+.+.+..|+.+|.+|+.+
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~---~~~~~~~~A~~~L~~Ls~~ 87 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLSHH 87 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHTTS
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcC
Confidence 44568888888854 588999999999999765 46777765 59999999999753 1345689999999999987
Q ss_pred chhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHH
Q 015513 168 SNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATK 247 (405)
Q Consensus 168 ~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~ 247 (405)
. +++..+.+.| +++.|+.+|++ ++..++..|+++|.+|+...+.....+ .+.|+++.|+++|+++ +++.+.
T Consensus 88 ~-~~~~~i~~~g--~i~~Lv~lL~~----~~~~v~~~A~~aL~nL~~~~~~~~~~v-~~~g~i~~Lv~lL~~~-~~~~~~ 158 (644)
T 2z6h_A 88 R-EGLLAIFKSG--GIPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGAKMAV-RLAGGLQKMVALLNKT-NVKFLA 158 (644)
T ss_dssp H-HHHHHHHTTT--HHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHSTTHHHHH-HHTTHHHHHHHGGGCC-CHHHHH
T ss_pred h-hhHHHHHHcC--CHHHHHHHHhC----CCHHHHHHHHHHHHHHHhCcchhHHHH-HHCCChHHHHHHHCcC-CHHHHH
Confidence 6 5888888888 99999999998 889999999999999998764444333 4679999999999998 788899
Q ss_pred HHHHHHHHhcc-CCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHc--
Q 015513 248 SGLHVLLQACP-MGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLR-- 324 (405)
Q Consensus 248 ~a~~aL~~L~~-~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-- 324 (405)
.++.+|.+|+. +++++..+++.|+++.|+++|.+...+.+++.++.+|.+|+.+++++..++. .|+++.|++++..
T Consensus 159 ~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~-~g~l~~L~~ll~~~~ 237 (644)
T 2z6h_A 159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPS 237 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHH-TTHHHHHHTTTTCSC
T ss_pred HHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhcCC
Confidence 99999999997 6789999999999999999998764456788999999999999999998876 5778777764322
Q ss_pred -------------------------------------cChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHh
Q 015513 325 -------------------------------------VSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQ 367 (405)
Q Consensus 325 -------------------------------------~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~ 367 (405)
.+...++.+..+|.+|+... .+.++.+.+.|+++.|+.+|.
T Consensus 238 ~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~--~~~~~~v~~~g~v~~Lv~lL~ 315 (644)
T 2z6h_A 238 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVL 315 (644)
T ss_dssp HHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHH
Confidence 22345566677777776542 357888899999999999998
Q ss_pred ccCc-HHHHHHHHHHHHHhhc
Q 015513 368 ADCE-KYLKDRAKEILRLHSN 387 (405)
Q Consensus 368 ~~~~-~~~k~~A~~ll~~l~~ 387 (405)
...+ +.+++.|..+|..+..
T Consensus 316 ~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 316 RAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp HHTTCHHHHHHHHHHHHHHTS
T ss_pred ccCCcHHHHHHHHHHHHHHhc
Confidence 6443 7899999999998864
No 30
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.89 E-value=1.6e-21 Score=193.08 Aligned_cols=281 Identities=13% Similarity=0.130 Sum_probs=228.7
Q ss_pred hHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCc-
Q 015513 92 KDQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPS- 168 (405)
Q Consensus 92 ~~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~- 168 (405)
...++.|++.+.+ +..+..|++.|.+++..++.++..+.+.|+++.|+.+|.+. .+...++.|+++|.+|+.+.
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~---~~~~v~~~a~~~L~~l~~~~~ 182 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ---NRLTMTRNAVWALSNLCRGKS 182 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC---CCHHHHHHHHHHHHHHHCCSS
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC---CCHHHHHHHHHHHHHHhCCCC
Confidence 3467778888854 48899999999999998888999999999999999999742 23456899999999998764
Q ss_pred hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHH
Q 015513 169 NENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKS 248 (405)
Q Consensus 169 ~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~ 248 (405)
+..+..+. .+ +++.|+.++.+ ++..++..|+++|.+|+.......... ...|+++.|+++|.++ ++.++..
T Consensus 183 ~~~~~~~~-~~--~l~~L~~~l~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~ll~~~-~~~v~~~ 253 (450)
T 2jdq_A 183 PPPEFAKV-SP--CLNVLSWLLFV----SDTDVLADACWALSYLSDGPNDKIQAV-IDAGVCRRLVELLMHN-DYKVVSP 253 (450)
T ss_dssp SCCCGGGT-GG--GHHHHHHHTTC----CCHHHHHHHHHHHHHHTSSSHHHHHHH-HHTTTHHHHHHHTTCS-CHHHHHH
T ss_pred CCCCHHHH-HH--HHHHHHHHHcc----CCHHHHHHHHHHHHHHHCCCcHHHHHH-HHcCcHHHHHHHHCCC-chhHHHH
Confidence 33333333 45 89999999998 889999999999999987543333333 3568999999999987 8999999
Q ss_pred HHHHHHHhccCCc-hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc-CHhhHHHHHhcccchHHHHHHHHccC
Q 015513 249 GLHVLLQACPMGG-NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS-CADGRLKFREHAGAIAMVTKRLLRVS 326 (405)
Q Consensus 249 a~~aL~~L~~~~~-n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~s 326 (405)
|+++|.+|+...+ .+..+++.|++|.|+.+|.+. +..+++.|+++|.+|+. +.+....++. .|+++.|++.+....
T Consensus 254 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~ 331 (450)
T 2jdq_A 254 ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVID-ANIFPALISILQTAE 331 (450)
T ss_dssp HHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHHSC
T ss_pred HHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHhcCC
Confidence 9999999998765 455578899999999999885 77899999999999996 4556666654 689999999776666
Q ss_pred hhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 327 PATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 327 ~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
...+..+..+|.+++.... ++..+.+++.|+++.|+.+++. .++.+++.|...|..+...
T Consensus 332 ~~v~~~a~~~L~~l~~~~~-~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 332 FRTRKEAAWAITNATSGGS-AEQIKYLVELGCIKPLCDLLTV-MDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHHHHHHHHHCC-HHHHHHHHHHTCHHHHHHGGGS-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC-HHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHHHHHh
Confidence 7888999999999987532 3467778899999999999984 5788999999888877653
No 31
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.88 E-value=4e-23 Score=156.19 Aligned_cols=75 Identities=31% Similarity=0.417 Sum_probs=69.2
Q ss_pred CCCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCC
Q 015513 4 IEVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTHNGID 81 (405)
Q Consensus 4 ~~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~~~~~ 81 (405)
..+|++|+||||+++|+|||+++|||+|||.||++||.. +.+||.|++++.. .++.||..|+++|+.|+.+++..
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~-~~l~pn~~L~~~i~~~~~~~~~~ 83 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN--SPTDPFNRQMLTE-SMLEPVPELKEQIQAWMREKQSS 83 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCG-GGCEECHHHHHHHHHHHHHHHHT
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc--CCCCCCCcCCCCh-HhcchHHHHHHHHHHHHHHhhhc
Confidence 468999999999999999999999999999999999985 4789999999986 89999999999999999987643
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.87 E-value=9.6e-21 Score=200.55 Aligned_cols=281 Identities=12% Similarity=0.065 Sum_probs=227.1
Q ss_pred HHHHHHHHHhc---chhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCch
Q 015513 93 DQVRKLVRDLD---SGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSN 169 (405)
Q Consensus 93 ~~i~~lv~~l~---~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~ 169 (405)
..+..|++.+. +...+..|+..|++++.. +.++..+.+.|+|+.|+.+|++.+ ...+..|+++|.+|+...+
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~----~~v~~~A~~aL~nLa~~~~ 266 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPV----DSVLFHAITTLHNLLLHQE 266 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSC----HHHHHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCC----HHHHHHHHHHHHHHhCCCh
Confidence 56777787774 458899999999998874 567999999999999999997642 4568999999999998766
Q ss_pred hhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhh-hccchhhhcccHHHHHHHHHHHhhcCChHHHHH
Q 015513 170 ENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLEL-ASKGLLESTLNLDFFKEMVKLLKENISQQATKS 248 (405)
Q Consensus 170 ~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~-~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~ 248 (405)
+.+..+.+.| +++.|+.+|.+ .+...+..|+.+|.+|+.. ++++..+. ..|+++.|+++|+++.....+..
T Consensus 267 ~~~~~v~~~g--~v~~Lv~lL~~----~~~~v~~~a~~aL~~La~~~~e~~~~i~--~~~~i~~Lv~lL~~~~~~~~~~~ 338 (780)
T 2z6g_A 267 GAKMAVRLAG--GLQKMVALLNK----TNVKFLAITTDCLQILAYGNQESKLIIL--ASGGPQALVNIMRTYTYEKLLWT 338 (780)
T ss_dssp THHHHHHHTT--HHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCHHHHHHHH--TTTHHHHHHHHHTTCCCHHHHHH
T ss_pred hhHHHHHHcC--CHHHHHHHHhc----CCHHHHHHHHHHHHHHhcCChHHHHHHH--HcCCHHHHHHHHhcCCHHHHHHH
Confidence 7888888888 99999999998 7889999999999999864 45555555 56999999999998745566778
Q ss_pred HHHHHHHhccCCchhHHHHhhcchHHHHHHhhcC--------------------------------------CCCCcHHH
Q 015513 249 GLHVLLQACPMGGNRVKITEANAVFELIELELTK--------------------------------------PEKSTTEL 290 (405)
Q Consensus 249 a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~--------------------------------------~~~~~~e~ 290 (405)
++.+|.+|+.+.+++..+++.|+++.|+.+|.+. .+..+++.
T Consensus 339 a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~ 418 (780)
T 2z6g_A 339 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTC 418 (780)
T ss_dssp HHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHH
Confidence 8999999999989999999888887777665431 14567788
Q ss_pred HHHHHHHHhcCH-hhHHHHHhcccchHHHHHHHHccC--hhhhHHHHHHHHHhcccCCCH-HHHHHHHhcChHHHHHHHH
Q 015513 291 IFNLLAQLCSCA-DGRLKFREHAGAIAMVTKRLLRVS--PATNDRAVHILSSISKFSATY-EVVLEMLSVGAVSKLCMVT 366 (405)
Q Consensus 291 a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~~l~~~s--~~~~e~a~~~L~~L~~~~~~~-~~~~~~~~~G~v~~Ll~ll 366 (405)
|+++|.+|+..+ +++..++. .|+++.|+++|...+ ...++.|+.+|.+|+...++. ..+..++..|+++.|+.+|
T Consensus 419 A~~aL~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL 497 (780)
T 2z6g_A 419 AAGILSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLL 497 (780)
T ss_dssp HHHHHHHHTSSCHHHHHHHHT-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHh
Confidence 888888888764 45666654 789999999776533 278899999999998765543 2456788899999999999
Q ss_pred hccCcHHHHHHHHHHHHHhhc
Q 015513 367 QADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 367 ~~~~~~~~k~~A~~ll~~l~~ 387 (405)
.....+.+++.|+++|..+..
T Consensus 498 ~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 498 HPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp STTCCHHHHHHHHHHHHHHHS
T ss_pred cCCChHHHHHHHHHHHHHHhc
Confidence 866566899999999998875
No 33
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.87 E-value=8.9e-23 Score=158.80 Aligned_cols=75 Identities=31% Similarity=0.420 Sum_probs=69.3
Q ss_pred CCCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCC
Q 015513 4 IEVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTHNGID 81 (405)
Q Consensus 4 ~~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~~~~~ 81 (405)
..+|++|+||||+++|+|||+++|||+|||.||++||.. +.+||.|++++.. .++.||..|++.|+.|+.+|+..
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~-~~L~pn~~Lk~~I~~~~~~~~~~ 98 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN--SPTDPFNRQTLTE-SMLEPVPELKEQIQAWMREKQNS 98 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS--CSBCSSSCCBCCT-TSSEECHHHHHHHHHHHHTTTCC
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc--CCCCCCCCCCCCh-hhceECHHHHHHHHHHHHHhhhc
Confidence 468999999999999999999999999999999999974 5789999999986 89999999999999999988643
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=1.9e-21 Score=172.85 Aligned_cols=194 Identities=20% Similarity=0.222 Sum_probs=168.8
Q ss_pred HHHHHHHHhc--chhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhh
Q 015513 94 QVRKLVRDLD--SGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNEN 171 (405)
Q Consensus 94 ~i~~lv~~l~--~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~ 171 (405)
..+.|+..+. ++..+..|++.|.+++..++.++..+.+.|+++.|+.+|.+. +...++.|+++|.+|+.++++.
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSCHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCcHH
Confidence 3445556664 358899999999999988999999999999999999999754 2456899999999999877788
Q ss_pred HHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHH
Q 015513 172 KALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLH 251 (405)
Q Consensus 172 ~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~ 251 (405)
+..+.+.| +++.|+.+|++ ++..++..|+++|.+|+.......... .+.|+++.|+++|+++ ++.+++.|++
T Consensus 89 ~~~i~~~g--~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~ll~~~-~~~v~~~a~~ 160 (210)
T 4db6_A 89 IQAVIDAG--ALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAV-IDAGALPALVQLLSSP-NEQILQEALW 160 (210)
T ss_dssp HHHHHHTT--CHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHH-HHTTHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HHHHHHCC--CHHHHHHHHcC----CcHHHHHHHHHHHHHHHcCCHHHHHHH-HHcCcHHHHHHHHcCC-CHHHHHHHHH
Confidence 88888888 99999999998 899999999999999997554443333 4679999999999998 8999999999
Q ss_pred HHHHhccC-CchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc
Q 015513 252 VLLQACPM-GGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS 300 (405)
Q Consensus 252 aL~~L~~~-~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~ 300 (405)
+|.+|+.. ++++..+++.|+++.|++++.++ +..+++.|+.+|.+|+.
T Consensus 161 aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence 99999997 56888899999999999999985 78899999999999975
No 35
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.87 E-value=1.5e-22 Score=156.87 Aligned_cols=76 Identities=28% Similarity=0.473 Sum_probs=70.0
Q ss_pred CCCCCcccCcCCcccCCCccccCCC-CcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCC
Q 015513 4 IEVPQYFICPISLQIMKDPVTAITG-ISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTHNGIDR 82 (405)
Q Consensus 4 ~~~~~~~~Cpi~~~~m~dPv~~~~g-~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~~~~~~ 82 (405)
..+|++|+||||+++|+|||+++|| |+|||.||++||.. +.+||+|++++.. .+++||..|++.|+.|+.+++..+
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~l~~-~~L~pn~~Lk~~I~~~~~~~~~~~ 93 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPLTM-DQIRPNTELKEKIQRWLAERKQQS 93 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBCCT-TTSEECHHHHHHHHHHHHHSTTCS
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh--CCCCCCCCCCCCh-hhceEcHHHHHHHHHHHHHcchhh
Confidence 3589999999999999999999999 99999999999975 4689999999986 899999999999999999987643
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=3.2e-21 Score=171.37 Aligned_cols=194 Identities=16% Similarity=0.127 Sum_probs=167.1
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhh-ccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc-C
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELA-SKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP-M 259 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~-~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~-~ 259 (405)
..+.|+.+|++ .+.+.+..|+++|.+|+... +.+..+. +.|+++.|+++|+++ ++.+++.|+++|.+|+. +
T Consensus 13 ~~~~l~~LL~s----~~~~v~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 13 ELPQMVQQLNS----PDQQELQSALRKLSQIASGGNEQIQAVI--DAGALPALVQLLSSP-NEQILQEALWALSNIASGG 85 (210)
T ss_dssp CHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHH--HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHhcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCC
Confidence 78899999998 89999999999999999554 4444444 679999999999998 89999999999999996 5
Q ss_pred CchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHh-hHHHHHhcccchHHHHHHHHccChhhhHHHHHHHH
Q 015513 260 GGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCAD-GRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILS 338 (405)
Q Consensus 260 ~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~ 338 (405)
++++..+++.|++|.|+.+|.++ +..+++.|+++|.+|+...+ .+..++ +.|+++.|++++...+...++.++.+|.
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 163 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALS 163 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 57889999999999999999986 78899999999999996544 445554 5789999999666556788999999999
Q ss_pred HhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 339 SISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 339 ~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
+|+..+ +..+..+.+.|+++.|+.+++ +.++.+|+.|..+|+.+.+
T Consensus 164 ~l~~~~--~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 164 NIASGG--NEQKQAVKEAGALEKLEQLQS-HENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTSC--HHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHCC
T ss_pred HHHcCC--cHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHhc
Confidence 999754 457888999999999999998 5688999999999998764
No 37
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.86 E-value=2.9e-20 Score=196.91 Aligned_cols=280 Identities=16% Similarity=0.100 Sum_probs=224.3
Q ss_pred hHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHH-hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCc
Q 015513 92 KDQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEE-AFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPS 168 (405)
Q Consensus 92 ~~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~-~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~ 168 (405)
...++.|+..+.+ ...+..|+..|.+++... .++..+.+ .|+++.|+.+|.+. .+...++.|+.+|.+|+...
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-~~~~~i~~~~~~i~~Lv~~L~~~---~d~~vr~~Aa~aL~~Ls~~~ 224 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNT---NDVETARCTSGTLHNLSHHR 224 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-HHHHHHTTCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHTSH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-hhHHHHHhccChHHHHHHHHcCC---CCHHHHHHHHHHHHHHhCCc
Confidence 3456777777743 588999999999999754 56667775 59999999999754 13456899999999998775
Q ss_pred hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHH
Q 015513 169 NENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKS 248 (405)
Q Consensus 169 ~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~ 248 (405)
+++..+.+.| +|+.|+.+|++ ++..++..|+++|.+|+...+.....+ .+.|+++.|+++|+++ +..++..
T Consensus 225 -~~~~~i~~~g--~I~~Lv~lL~~----~~~~v~~~A~~aL~nLa~~~~~~~~~v-~~~g~v~~Lv~lL~~~-~~~v~~~ 295 (780)
T 2z6g_A 225 -EGLLAIFKSG--GIPALVNMLGS----PVDSVLFHAITTLHNLLLHQEGAKMAV-RLAGGLQKMVALLNKT-NVKFLAI 295 (780)
T ss_dssp -HHHHHHHHTT--HHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHSTTHHHHH-HHTTHHHHHHHGGGCC-CHHHHHH
T ss_pred -hhHHHHHHcC--CHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCChhhHHHH-HHcCCHHHHHHHHhcC-CHHHHHH
Confidence 5678888887 99999999998 889999999999999998765544444 4679999999999987 8899999
Q ss_pred HHHHHHHhcc-CCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHH----
Q 015513 249 GLHVLLQACP-MGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLL---- 323 (405)
Q Consensus 249 a~~aL~~L~~-~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~---- 323 (405)
++.+|.+|+. +++++..+++.|+++.|+.+|.++.....++.++.+|.+|+.+.+++..++. .|+++.|+.++.
T Consensus 296 a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~l~~Ll~lL~~~~~ 374 (780)
T 2z6g_A 296 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQ 374 (780)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHH-TTHHHHHGGGTTCSCH
T ss_pred HHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHH-hchHHHHHHHHcCCch
Confidence 9999999997 5679999999999999999998864445677899999999998888888765 566666665322
Q ss_pred -----------------------------------ccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhc
Q 015513 324 -----------------------------------RVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQA 368 (405)
Q Consensus 324 -----------------------------------~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~ 368 (405)
..+...++.|+.+|.+|+... .+.+..+++.|+++.|+.+|..
T Consensus 375 ~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~--~~~~~~i~~~g~i~~Lv~lL~~ 452 (780)
T 2z6g_A 375 RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLR 452 (780)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC--HHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHCCCHHHHHHHHHc
Confidence 123355667777788887643 3578888999999999999986
Q ss_pred cC-cHHHHHHHHHHHHHhhc
Q 015513 369 DC-EKYLKDRAKEILRLHSN 387 (405)
Q Consensus 369 ~~-~~~~k~~A~~ll~~l~~ 387 (405)
.. .+.+++.|..+|..+..
T Consensus 453 ~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 453 AGDREDITEPAICALRHLTS 472 (780)
T ss_dssp HTTCHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHHHHHHHHHh
Confidence 43 35899999999998865
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.85 E-value=2.6e-20 Score=174.24 Aligned_cols=183 Identities=16% Similarity=0.163 Sum_probs=159.6
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHH-HHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHH
Q 015513 106 HLRISTLKKMEALAMENERNRKSLEEAFVVRALVL-FIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIG 184 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~-lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~ 184 (405)
+.+..|+..|..++. +.+|...+.+.|++++|+. +|.++ +..+++.|+++|.+++.+++.++..+.+.| +++
T Consensus 55 e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~----~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g--~l~ 127 (296)
T 1xqr_A 55 QEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAG----AAGLRWRAAQLIGTCSQNVAAIQEQVLGLG--ALR 127 (296)
T ss_dssp HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCS----SHHHHHHHHHHHHHHHTTCHHHHHHHHHTT--HHH
T ss_pred HHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCC----CHHHHHHHHHHHHHHHhCCHHHHHHHHHCC--CHH
Confidence 678889999999986 4568888999999999999 99754 245699999999999998888999999988 999
Q ss_pred HHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccC-Cchh
Q 015513 185 ALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPM-GGNR 263 (405)
Q Consensus 185 ~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~-~~n~ 263 (405)
.|+.+|++ +.+..++.+|+++|.+|+.+.......+ .+.|+++.|+.+|+++ +..+++.|+++|.+|+.. ++.+
T Consensus 128 ~Ll~LL~~---~~~~~v~~~A~~ALsnl~~~~~~~~~~~-~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~ 202 (296)
T 1xqr_A 128 KLLRLLDR---DACDTVRVKALFAISCLVREQEAGLLQF-LRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHK 202 (296)
T ss_dssp HHHHHHHH---CSCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHcc---CCCHHHHHHHHHHHHHHHcCCcHHHHHH-HHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHH
Confidence 99999997 2478999999999999987654433333 3579999999999998 899999999999999884 5688
Q ss_pred HHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcC
Q 015513 264 VKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSC 301 (405)
Q Consensus 264 ~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~ 301 (405)
..+++.|++|+|+.+|.+. +..+++.|+.+|.+|+..
T Consensus 203 ~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 203 GTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHcCC-ChhHHHHHHHHHHHHHhC
Confidence 8999999999999999986 889999999999999976
No 39
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.84 E-value=1.4e-21 Score=166.72 Aligned_cols=76 Identities=34% Similarity=0.652 Sum_probs=70.2
Q ss_pred CCCCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC
Q 015513 3 EIEVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTHNGI 80 (405)
Q Consensus 3 ~~~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~~~~ 80 (405)
...+|++|+||||+++|+|||+++|||||||.||++||..++ .+||+|+.++.. .+++||..|+++|+.|+.+||.
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~-~tcP~t~~~l~~-~~L~pN~~Lk~~Ie~~~~~~~~ 175 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG-HFDPVTRSPLTQ-DQLIPNLAMKEVIDAFIQENGW 175 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC-SBCTTTCCBCCG-GGCEECHHHHHHHHHHHHHCTT
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC-CCCCCCcCCCCh-hhCcchHHHHHHHHHHHHHCCC
Confidence 357899999999999999999999999999999999998753 479999999986 8999999999999999999986
No 40
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.83 E-value=5.7e-20 Score=188.61 Aligned_cols=251 Identities=13% Similarity=0.079 Sum_probs=196.9
Q ss_pred hHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHH---h
Q 015513 125 NRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVA---V 201 (405)
Q Consensus 125 ~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~---~ 201 (405)
++..+.++|+|+.|+.++++.+ ...++.|+++|.+|+.+ +++|..+++.| +++.|+.+|.+ ++.. .
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~s----~~~re~A~~aL~nLS~d-~~~R~~lvqqG--al~~LL~lL~s----~~~~~~~~ 517 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNLS----PNCKQQVVRIIYNITRS-KNFIPQLAQQG--AVKIILEYLAN----KQDIGEPI 517 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGSC----HHHHHHHHHHHHHHHTS-GGGHHHHHHTT--HHHHHHHHTTC----C---CCHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCC----HHHHHHHHHHHHHHcCC-HHHHHHHHHCC--CHHHHHHHHhc----CCCcchHH
Confidence 6778889999999999997643 34599999999999876 57899999988 99999999997 4433 7
Q ss_pred HHHHHHHHHHHHhhhccchhhhc-ccHHHHHHHHHHHhhcCCh-------------HHHHHHHHHHHHhccCCch-----
Q 015513 202 KTSAMIVLKMVLELASKGLLEST-LNLDFFKEMVKLLKENISQ-------------QATKSGLHVLLQACPMGGN----- 262 (405)
Q Consensus 202 ~~~A~~~L~~L~~~~~~~~~i~~-~~~g~i~~Lv~lL~~~~~~-------------~~~~~a~~aL~~L~~~~~n----- 262 (405)
+.+|+.+|.+|+...+....+.. ...|+|++|++||..+... -.+..|+.||.||++.++|
T Consensus 518 k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~ 597 (778)
T 3opb_A 518 RILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEV 597 (778)
T ss_dssp HHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHH
Confidence 99999999999866554443320 1148999999999831111 2377999999999998743
Q ss_pred hHHHHhh-cchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhH-HHHHhc-----ccchHHHHHHHHccChhhhHHHHH
Q 015513 263 RVKITEA-NAVFELIELELTKPEKSTTELIFNLLAQLCSCADGR-LKFREH-----AGAIAMVTKRLLRVSPATNDRAVH 335 (405)
Q Consensus 263 ~~~~v~~-g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~-~~i~~~-----~g~i~~Lv~~l~~~s~~~~e~a~~ 335 (405)
|..+++. |++|.|.++|.++ +..++..|+.++.||+.+++++ .++... .++++.||.++.......+..|..
T Consensus 598 r~~Ii~~~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAag 676 (778)
T 3opb_A 598 CKHIVSTKVYWSTIENLMLDE-NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAA 676 (778)
T ss_dssp HHHHHHSHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHH
Confidence 7888985 9999999999985 7789999999999999999876 355332 124889999554444577788888
Q ss_pred HHHHhcccCCCHHHHHHHHhc-ChHHHHHHHHhcc-CcHHHHHHHHHHHHHhhccc
Q 015513 336 ILSSISKFSATYEVVLEMLSV-GAVSKLCMVTQAD-CEKYLKDRAKEILRLHSNVW 389 (405)
Q Consensus 336 ~L~~L~~~~~~~~~~~~~~~~-G~v~~Ll~ll~~~-~~~~~k~~A~~ll~~l~~~~ 389 (405)
+|.+++.. ++.+.+.+++. ++++.++.+++.. ..+.++..++.++..+..+.
T Consensus 677 ALAnLts~--~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 677 IFANIATT--IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHHHHH--CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCC--ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 88887643 34577888876 7999999999853 68899999999999999854
No 41
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.82 E-value=7.6e-21 Score=141.78 Aligned_cols=76 Identities=51% Similarity=0.998 Sum_probs=70.4
Q ss_pred CCCCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC
Q 015513 3 EIEVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTHNGI 80 (405)
Q Consensus 3 ~~~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~~~~ 80 (405)
+.++|++|.||||+++|+|||+++|||+||+.||.+|+.. +..+||.|++++.. .++.+|..|+++|+.|..++++
T Consensus 2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~~~-~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA-GHKTCPKSQETLLH-AGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT-TCCBCTTTCCBCSS-CCCEECTTTHHHHHHHHHHSCC
T ss_pred CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH-CcCCCCCCcCCCCh-hhCccCHHHHHHHHHHHHHcCC
Confidence 4678999999999999999999999999999999999975 36789999999976 7899999999999999999876
No 42
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.82 E-value=2.7e-19 Score=167.35 Aligned_cols=181 Identities=12% Similarity=0.067 Sum_probs=153.1
Q ss_pred hHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHH-HHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHH
Q 015513 153 GLEEALRILSLVWSPSNENKALVDHHNQDLIGALMW-VLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFK 231 (405)
Q Consensus 153 ~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~-lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~ 231 (405)
.+..|+..|.++..+. ++...+.+.| +++.|+. +|.+ +++.+++.|+++|.+++.+.+..+..+ .+.|+++
T Consensus 56 ~k~~Al~~L~~lv~~~-dna~~~~~~G--~l~~Lv~~lL~s----~~~~vr~~Aa~~Lg~ia~~n~~~~~~v-v~~g~l~ 127 (296)
T 1xqr_A 56 EREGALELLADLCENM-DNAADFCQLS--GMHLLVGRYLEA----GAAGLRWRAAQLIGTCSQNVAAIQEQV-LGLGALR 127 (296)
T ss_dssp HHHHHHHHHHHHHTSH-HHHHHHHHTT--HHHHHHHTTTTC----SSHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTHHH
T ss_pred HHHHHHHHHHHHHhCh-hhHHHHHHcC--CHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhCCHHHHHHH-HHCCCHH
Confidence 4778889999998765 4667677787 8999999 9998 899999999999999998665444444 4779999
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhccCC-chhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcC-HhhHHHHH
Q 015513 232 EMVKLLKENISQQATKSGLHVLLQACPMG-GNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSC-ADGRLKFR 309 (405)
Q Consensus 232 ~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~-~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~-~~~~~~i~ 309 (405)
+|+.+|+++.+..+++.|++||.+|+.+. ++...++++|++|+|+.+|.++ +..++..|+++|.+|+.. ++.+..++
T Consensus 128 ~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 128 KLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 99999997547899999999999999865 4567788999999999999986 889999999999999864 55677766
Q ss_pred hcccchHHHHHHHHccChhhhHHHHHHHHHhccc
Q 015513 310 EHAGAIAMVTKRLLRVSPATNDRAVHILSSISKF 343 (405)
Q Consensus 310 ~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~ 343 (405)
+ .|++++|+++|...+...++.++.+|.+|...
T Consensus 207 ~-~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 207 S-MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp H-TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred H-cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 5 79999999976655678899999999999976
No 43
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.8e-20 Score=141.71 Aligned_cols=75 Identities=27% Similarity=0.506 Sum_probs=64.7
Q ss_pred CCCCcccCcCCcccCCCccccC-CCCcccHHHHHHHHhcC----CCCCCCC--CCCC-CCCCCCCcccHHHHHHHHHHHH
Q 015513 5 EVPQYFICPISLQIMKDPVTAI-TGISYDRESIEKWLKTA----KDTTCPV--TKQP-LPRDSGLTSNHTLRRLIQAWCT 76 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~----~~~~cP~--~~~~-~~~~~~~~~n~~l~~~I~~~~~ 76 (405)
..+++|+||||+++|+|||+++ |||+|||.||++||..+ +..+||+ |+.. +.. .++.||..|+++|+.|..
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~-~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK-SDLIQDEALRRAIENHNK 81 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG-GGEEECHHHHHHHHHHHT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH-hhCcCCHHHHHHHHHHHH
Confidence 3578899999999999999996 99999999999999863 2468999 5544 765 899999999999999998
Q ss_pred hcCC
Q 015513 77 HNGI 80 (405)
Q Consensus 77 ~~~~ 80 (405)
+++.
T Consensus 82 ~~~r 85 (94)
T 2yu4_A 82 KRHR 85 (94)
T ss_dssp TCCS
T ss_pred Hhcc
Confidence 8753
No 44
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.1e-17 Score=171.66 Aligned_cols=281 Identities=12% Similarity=0.121 Sum_probs=207.4
Q ss_pred hHHHHHHHHHhcchhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhh
Q 015513 92 KDQVRKLVRDLDSGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNEN 171 (405)
Q Consensus 92 ~~~i~~lv~~l~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~ 171 (405)
+..++-|...+++...+..|+-.|..+..........+. ...+.++++|.+. ....++.|+..|..|+.+. +.
T Consensus 295 ~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~si~--~La~~~~~~L~~~----~~~~~~~AvEgLaYLSl~~-~V 367 (778)
T 3opb_A 295 ENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLK--QLSEIFINAISRR----IVPKVEMSVEALAYLSLKA-SV 367 (778)
T ss_dssp HHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCCHH--HHHHHHHHHTTTC----CHHHHHHHHHHHHHHTTSS-HH
T ss_pred HhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCcHH--HHHHHHHHHHhcC----CccHHHHHHHHHHHHhCCH-HH
Confidence 334444555556667777788888777664433222221 2445555555432 2334899999999999876 67
Q ss_pred HHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhcc---------------------------------
Q 015513 172 KALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASK--------------------------------- 218 (405)
Q Consensus 172 ~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~--------------------------------- 218 (405)
|+.+++.. ++++.|+.+++. .++.....-++.+|.||+...++
T Consensus 368 Ke~L~~d~-~~L~~Lv~llk~---~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~ 443 (778)
T 3opb_A 368 KIMIRSNE-SFTEILLTMIKS---QKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE 443 (778)
T ss_dssp HHHHHHCH-HHHHHHHHHHTT---TCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHH
T ss_pred HHHHHhCH-HHHHHHHHHHhC---CCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchH
Confidence 77777665 489999999984 15677888899999999864331
Q ss_pred -----chhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCC--cHHHH
Q 015513 219 -----GLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKS--TTELI 291 (405)
Q Consensus 219 -----~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~--~~e~a 291 (405)
+.... .+.|+++.|+.+++++ ++.+++.|+++|.+|+.++++|..+++.|++++|+.+|.++.+.. .++.|
T Consensus 444 ~v~~~~~~~l-~eaGvIp~Lv~Ll~S~-s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~A 521 (778)
T 3opb_A 444 DILLFNEKYI-LRTELISFLKREMHNL-SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILG 521 (778)
T ss_dssp HHHHHHHHHT-TTTTHHHHHHHHGGGS-CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHH
T ss_pred HHHHHHHHHH-HHCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHH
Confidence 11223 5789999999999998 899999999999999999999999999999999999999863322 78999
Q ss_pred HHHHHHHhcCHhhHHHHHh--cccchHHHHHHHHcc-Ch--------------hhhHHHHHHHHHhcccCCC--HHHHHH
Q 015513 292 FNLLAQLCSCADGRLKFRE--HAGAIAMVTKRLLRV-SP--------------ATNDRAVHILSSISKFSAT--YEVVLE 352 (405)
Q Consensus 292 ~~~L~~L~~~~~~~~~i~~--~~g~i~~Lv~~l~~~-s~--------------~~~e~a~~~L~~L~~~~~~--~~~~~~ 352 (405)
+.+|++|..+.+....+-. ..|+|++|++ |+.. .. ..+-.|+.+|.+|+....+ ++.++.
T Consensus 522 A~ALArLlis~np~~~f~~~~~~~aI~pLv~-LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~ 600 (778)
T 3opb_A 522 CRALTRMLIFTNPGLIFKKYSALNAIPFLFE-LLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKH 600 (778)
T ss_dssp HHHHHHHHHTSCHHHHSSSSCSTTHHHHHHH-TSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHcCCCccccchHHHHH-HcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 9999999866554444311 1389999999 4442 11 1255788999999987532 346788
Q ss_pred HHhc-ChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 353 MLSV-GAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 353 ~~~~-G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
+++. |+++.|..+|.+ ..+.+|+.|++++.++..
T Consensus 601 Ii~~~ga~~~L~~LL~s-~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 601 IVSTKVYWSTIENLMLD-ENVPLQRSTLELISNMMS 635 (778)
T ss_dssp HHHSHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHhC-CCHHHHHHHHHHHHHHhC
Confidence 8985 999999999985 477899999999998886
No 45
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.77 E-value=2e-19 Score=167.58 Aligned_cols=76 Identities=33% Similarity=0.664 Sum_probs=69.9
Q ss_pred CCCCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC
Q 015513 3 EIEVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTHNGI 80 (405)
Q Consensus 3 ~~~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~~~~ 80 (405)
..++|++|+||||+++|+|||+++|||||||.||++||..+ ..+||+|+.+++. .+++||..|+++|+.|+.+||.
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~-~~~cP~~~~~~~~-~~l~~n~~l~~~i~~~~~~~~~ 277 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV-GHFNPVTRSPLTQ-EQLIPNLAMKEVIDAFISENGW 277 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT-CSSCTTTCCCCCG-GGCEECHHHHHHHHHHHTTCSC
T ss_pred CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC-CCCCcCCCCCCch-hcCcccHHHHHHHHHHHHHCCC
Confidence 34689999999999999999999999999999999999874 4569999999986 8999999999999999999875
No 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.74 E-value=3.4e-18 Score=131.56 Aligned_cols=79 Identities=28% Similarity=0.435 Sum_probs=69.9
Q ss_pred CCCCCCcccCcCCcccCCCccccC-CCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCC
Q 015513 3 EIEVPQYFICPISLQIMKDPVTAI-TGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTHNGID 81 (405)
Q Consensus 3 ~~~~~~~~~Cpi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~~~~~ 81 (405)
...++++|.||||.++|.|||+++ |||+||+.||.+||...+...||.|+.++.....+.+|..|+++|+.|...++..
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 86 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT 86 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence 446789999999999999999999 9999999999999986545789999999743378999999999999999988653
No 47
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.64 E-value=3.6e-17 Score=114.65 Aligned_cols=55 Identities=20% Similarity=0.441 Sum_probs=49.2
Q ss_pred cccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHH
Q 015513 9 YFICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHT 66 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~ 66 (405)
.|.||||+++|+|||++ +|||+|||.+|++|+.++ .+||+|++++.. .+++||..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~--~~cP~t~~~L~~-~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT--GNDPITNEPLSI-EEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH--SBCTTTCCBCCG-GGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC--CCCcCCcCCCCh-hhcEECcc
Confidence 58999999999999999 899999999999999864 469999999986 88988753
No 48
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.61 E-value=3.8e-16 Score=127.00 Aligned_cols=70 Identities=14% Similarity=0.356 Sum_probs=62.2
Q ss_pred CCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHh
Q 015513 7 PQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTH 77 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~ 77 (405)
++++.||||.+.|.|||+++|||+||+.||.+|+..+ ...||.|+.++.....+.+|..|+++++.|...
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ-VFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT-CCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC-cCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 5678999999999999999999999999999999853 568999999997546899999999999988653
No 49
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.6e-16 Score=141.57 Aligned_cols=71 Identities=15% Similarity=0.298 Sum_probs=63.4
Q ss_pred CCCcccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCC--CCCCCCCCCCCcccHHHHHHHHHHHHh
Q 015513 6 VPQYFICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPV--TKQPLPRDSGLTSNHTLRRLIQAWCTH 77 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~--~~~~~~~~~~~~~n~~l~~~I~~~~~~ 77 (405)
...+|+||||+++|+|||+. .|||+|||.||.+||..++...||+ |++.+.. .++.||..|+++|+.|..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~-~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM-RDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG-GGEEECHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch-hhCCcCHHHHHHHHHHHHH
Confidence 35679999999999999986 9999999999999998654568999 9999976 8999999999999999774
No 50
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.58 E-value=8.6e-14 Score=139.62 Aligned_cols=283 Identities=15% Similarity=0.162 Sum_probs=206.2
Q ss_pred CCCCchHHHHHHHHHhcch---hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHh
Q 015513 87 KSALNKDQVRKLVRDLDSG---HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSL 163 (405)
Q Consensus 87 ~~~~~~~~i~~lv~~l~~~---~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~ 163 (405)
.++...+.|+.|..++++. +.|+.|+..|+.++++ +|.. +..++++.|+..|+....+ .+....++..|.+
T Consensus 15 ~~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~-Vg~~~l~~li~~L~~d~~D--~e~v~~~LetL~~ 88 (651)
T 3grl_A 15 PQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLE-VGIQAMEHLIHVLQTDRSD--SEIIGYALDTLYN 88 (651)
T ss_dssp ---CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTH-HHHHTHHHHHHHHHSCTTC--HHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHH-hhhhhHHHHHHHHhccccc--HHHHHHHHHHHHH
Confidence 3345578899999998543 9999999999999763 3433 4578899999999865433 4557778888877
Q ss_pred cCCCchh-----------------hHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhcc--chhhhc
Q 015513 164 VWSPSNE-----------------NKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASK--GLLEST 224 (405)
Q Consensus 164 L~~~~~~-----------------~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~--~~~i~~ 224 (405)
+...+++ ..+.+.+.. +.|+.|+.+|.+ .+...|.+++.+|..|+..... ...+.
T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~-~~i~~Ll~lL~~----~df~vR~~alqlL~~L~~~r~~~~Q~~Il- 162 (651)
T 3grl_A 89 IISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQ-ENVTLLLSLLEE----FDFHVRWPGVKLLTSLLKQLGPQVQQIIL- 162 (651)
T ss_dssp HHCCC--------------CHHHHHHHHHHHST-HHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHSHHHHHHHHH-
T ss_pred HhCCCCcccccccccccchHHHHHHHHHHHcCC-ccHHHHHHHhcC----ccHHHHHHHHHHHHHHHhcCcHHHHHHHH-
Confidence 5433221 122333333 389999999998 8999999999999999876644 33443
Q ss_pred ccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHh-hcchHHHHHHhhcCC---CCCcHHHHHHHHHHHhc
Q 015513 225 LNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITE-ANAVFELIELELTKP---EKSTTELIFNLLAQLCS 300 (405)
Q Consensus 225 ~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~-~g~v~~Lv~lL~~~~---~~~~~e~a~~~L~~L~~ 300 (405)
...++|+.||++|++. ....|..|+..|.+|+.+..+..+++. .|+++.|+.++.... ...+.+.++.+|.+|..
T Consensus 163 ~~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr 241 (651)
T 3grl_A 163 VSPMGVSRLMDLLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLK 241 (651)
T ss_dssp HSTTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT
T ss_pred hCcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh
Confidence 4679999999999987 788999999999999997766666655 599999999998741 12578999999999998
Q ss_pred CHh-hHHHHHhcccchHHHHHHHHccChh-------hhHH---HHHHHHHhcccCC----CHHHHHHHHhcChHHHHHHH
Q 015513 301 CAD-GRLKFREHAGAIAMVTKRLLRVSPA-------TNDR---AVHILSSISKFSA----TYEVVLEMLSVGAVSKLCMV 365 (405)
Q Consensus 301 ~~~-~~~~i~~~~g~i~~Lv~~l~~~s~~-------~~e~---a~~~L~~L~~~~~----~~~~~~~~~~~G~v~~Ll~l 365 (405)
.+. |+..|.+ .|+++.|.. ++..... ...+ ++.++..|+..+. ...++..+.+.|+++.|+.+
T Consensus 242 ~N~sNQ~~FrE-t~~i~~L~~-LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~l 319 (651)
T 3grl_A 242 NNNSNQNFFKE-GSYIQRMKP-WFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTI 319 (651)
T ss_dssp TCHHHHHHHHH-TTCGGGGGG-GGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cCHHHHHHHHH-cCCHHHHHH-HhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHH
Confidence 654 6666654 789999998 4443221 1122 4556666665433 33578888999999999999
Q ss_pred HhccC-cHHHHHHHHHHHHH
Q 015513 366 TQADC-EKYLKDRAKEILRL 384 (405)
Q Consensus 366 l~~~~-~~~~k~~A~~ll~~ 384 (405)
+.+.+ +..+|..|..++.-
T Consensus 320 l~~~~~p~~i~~~Al~tla~ 339 (651)
T 3grl_A 320 LMATGVPADILTETINTVSE 339 (651)
T ss_dssp HTCSSCCHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHH
Confidence 98654 56677766665553
No 51
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.58 E-value=9.6e-16 Score=159.07 Aligned_cols=75 Identities=32% Similarity=0.484 Sum_probs=69.2
Q ss_pred CCCCCCcccCcCCcccCCCccccCCC-CcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC
Q 015513 3 EIEVPQYFICPISLQIMKDPVTAITG-ISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTHNGI 80 (405)
Q Consensus 3 ~~~~~~~~~Cpi~~~~m~dPv~~~~g-~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~~~~ 80 (405)
..++|++|+|||++++|+|||++++| +||+|.+|++|+.+ +.+||.|+++++. .+++||++|++.|++|+.+++.
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~--~~tdP~Tr~~L~~-~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS--DSTDPFNRMPLKL-EDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCG-GGCEECHHHHHHHHHHHHHHHT
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc--CCCCCCCCCCCCc-ccccccHHHHHHHHHHHHHHHh
Confidence 35799999999999999999999998 79999999999976 4699999999986 8999999999999999998854
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.56 E-value=1.6e-15 Score=127.06 Aligned_cols=71 Identities=18% Similarity=0.359 Sum_probs=62.6
Q ss_pred CCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHh
Q 015513 6 VPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTH 77 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~ 77 (405)
++++|.||||.++|.|||+++|||+||+.||.+|+..+ ...||.|+.++.....+.+|..|+++++.|...
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ-VFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT-CCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC-CCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence 35678999999999999999999999999999999863 568999999998633899999999999988643
No 53
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.54 E-value=5.5e-15 Score=108.49 Aligned_cols=61 Identities=30% Similarity=0.427 Sum_probs=51.5
Q ss_pred CCCCCcccCcCCcccCCCccccC-CCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccc
Q 015513 4 IEVPQYFICPISLQIMKDPVTAI-TGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSN 64 (405)
Q Consensus 4 ~~~~~~~~Cpi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n 64 (405)
..+++++.||||++.|.|||+++ |||+||+.||.+|+...+...||.|++++...+.+.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 45788999999999999999999 99999999999999865456899999986543555555
No 54
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.53 E-value=3.3e-15 Score=116.37 Aligned_cols=69 Identities=19% Similarity=0.317 Sum_probs=62.3
Q ss_pred CCcccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 015513 7 PQYFICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTHN 78 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~~ 78 (405)
++++.||||.+.|.|||++ +|||+||+.||.+|+.. ...||.|+..+.. .++.+|..++++++.|....
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~-~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY--KTQCPTCCVTVTE-PDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCG-GGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC--CCCCCCCCCcCCh-hhCCcCHHHHHHHHHHHHHH
Confidence 4568999999999999988 89999999999999975 4789999999976 78999999999999998765
No 55
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.50 E-value=8.6e-16 Score=114.46 Aligned_cols=66 Identities=27% Similarity=0.428 Sum_probs=56.4
Q ss_pred CCCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcC-----CCCCCCCCCCCCCCCCCCcccHHHHHH
Q 015513 4 IEVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTA-----KDTTCPVTKQPLPRDSGLTSNHTLRRL 70 (405)
Q Consensus 4 ~~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~-----~~~~cP~~~~~~~~~~~~~~n~~l~~~ 70 (405)
..+++++.||||++.|.+|++++|||+||+.||.+|+... +...||.|+.++.. .++.+|..|+++
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~-~~l~~n~~l~~l 77 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF-EHLQANQHLANI 77 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS-SGGGTCSSSCCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH-hhCCcCHHHHHh
Confidence 3577889999999999999999999999999999998752 25689999999976 778888776544
No 56
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.49 E-value=1.4e-14 Score=114.67 Aligned_cols=68 Identities=18% Similarity=0.356 Sum_probs=59.8
Q ss_pred CCCcccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCC----CCcccHHHHHHHHHHHH
Q 015513 6 VPQYFICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDS----GLTSNHTLRRLIQAWCT 76 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~----~~~~n~~l~~~I~~~~~ 76 (405)
+++++.||||.+.|.|||++ +|||+||+.||.+|+.. ...||.|+..+.. . .+.+|..++++++.|..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~-~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET--SKYCPICDVQVHK-TRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS--CSBCTTTCCBSCS-SCGGGGEEECHHHHHHHHHHST
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh--CCcCcCCCccccc-cCcccccCcCHHHHHHHHHHhh
Confidence 56789999999999999998 99999999999999975 4789999999865 4 67889999999888743
No 57
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=6.1e-15 Score=111.39 Aligned_cols=65 Identities=28% Similarity=0.528 Sum_probs=56.2
Q ss_pred CCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcC----CCCCCCCCCCCCCCCCCCcccHHHHHH
Q 015513 5 EVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTA----KDTTCPVTKQPLPRDSGLTSNHTLRRL 70 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~----~~~~cP~~~~~~~~~~~~~~n~~l~~~ 70 (405)
.+.+++.||||.+.|.+|++++|||+||+.||.+|+... +...||.|+..+.. .++.+|..|+++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~~~n~~l~~~ 83 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF-GNLKPNLHVANI 83 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT-TCCEECSCCCSS
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH-HhCCcCHHHHHh
Confidence 467889999999999999999999999999999999862 25689999999976 788888776544
No 58
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.49 E-value=1.5e-14 Score=112.68 Aligned_cols=71 Identities=20% Similarity=0.334 Sum_probs=61.3
Q ss_pred CCCcccCcCCcccCCCccc-cCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 015513 6 VPQYFICPISLQIMKDPVT-AITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTHN 78 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~dPv~-~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~~ 78 (405)
+.+++.||||++.|.+||+ ++|||+||+.||.+|+... ...||.|+.++.. .++.+|..+.++++....-.
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~-~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ-RAQCPHCRAPLQL-RELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT-CSBCTTTCCBCCG-GGCEECTTHHHHHHHHHHHC
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC-cCCCCCCCCcCCH-HHhHhhHHHHHHHHHHHHHH
Confidence 3567899999999999999 8999999999999999874 3689999999976 88999988888877765543
No 59
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=8.1e-15 Score=110.70 Aligned_cols=65 Identities=20% Similarity=0.471 Sum_probs=56.2
Q ss_pred CCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhc----CCCCCCCCCCCCCCCCCCCcccHHHHHH
Q 015513 5 EVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKT----AKDTTCPVTKQPLPRDSGLTSNHTLRRL 70 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~----~~~~~cP~~~~~~~~~~~~~~n~~l~~~ 70 (405)
.+++++.||||.+.|++|++++|||+||+.||.+|+.. .+...||.|+..+.. .++.+|..|+++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~~~n~~l~~~ 83 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP-ENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS-SSCCCSCCCCCC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH-HhcCccHHHHHh
Confidence 46788999999999999999999999999999999875 235789999999976 788888776544
No 60
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.5e-14 Score=106.95 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=53.8
Q ss_pred CCCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 015513 4 IEVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLI 71 (405)
Q Consensus 4 ~~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I 71 (405)
....+++.||||++.|++||+++|||+||+.||.+|+.. ...||.|+.++. ..+.+|..+.+.+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~--~~~~~~~~l~~~~ 73 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA--TPRCYICDQPTG--GIFNPAKELMAKL 73 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH--CSBCSSSCCBCC--SCCEECHHHHHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC--CCcCCCcCcccc--ccCCcHHHHHHHH
Confidence 345678999999999999999999999999999999975 468999999985 5677886554443
No 61
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.46 E-value=1.3e-14 Score=116.48 Aligned_cols=68 Identities=21% Similarity=0.330 Sum_probs=61.0
Q ss_pred CCCcccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 015513 6 VPQYFICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCTHN 78 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~~~ 78 (405)
+.+++.||||.++|.+||++ +|||+||+.||.+|+. ..||.|+.++.. .++.+|..|+++++.+....
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~~-~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAWI-QDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCSC-SSCCCCHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCcc-ccccccHHHHHHHHHHHHHH
Confidence 35679999999999999999 9999999999999985 579999999975 88999999999999886654
No 62
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.45 E-value=3.1e-14 Score=121.63 Aligned_cols=70 Identities=20% Similarity=0.413 Sum_probs=60.9
Q ss_pred CCCcccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 015513 6 VPQYFICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCT 76 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~ 76 (405)
+.+++.||||++.|.|||++ +|||+||+.||.+|+..+ ...||.|+.++.....+.+|..|+++|+.|..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG-NKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT-CCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC-cCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 44668999999999999988 999999999999999863 67899999998544678999999999998854
No 63
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.45 E-value=3.3e-14 Score=114.37 Aligned_cols=69 Identities=23% Similarity=0.422 Sum_probs=61.2
Q ss_pred CCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 015513 5 EVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWC 75 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~ 75 (405)
.++++|.||||+++|.+||+++|||+||+.||.+|+... ...||.|+.++.. ..+.+|..+++.|..+.
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~-~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLE-NQLFPDNFAKREILSLM 82 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCG-GGCEECHHHHHHHHTSE
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC-CCCCCCCCCCcCH-HhcccCHHHHHHHccce
Confidence 567889999999999999999999999999999999864 4589999999976 77889999988887753
No 64
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1e-13 Score=101.06 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=50.6
Q ss_pred CCCCCcccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccc
Q 015513 4 IEVPQYFICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSN 64 (405)
Q Consensus 4 ~~~~~~~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n 64 (405)
..+.+++.||||++.|.||+++ +|||+||+.||.+|+.. ...||.|+.++.. .++.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~-~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVHQ-TQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCCS-SCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccCc-cccccc
Confidence 3567889999999999999987 99999999999999976 4789999999976 666554
No 65
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=99.01 Aligned_cols=52 Identities=12% Similarity=0.323 Sum_probs=46.8
Q ss_pred CCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 5 EVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.+++++.||||++.|++||+++|||+||+.||.+|+.. +...||.|+.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS-SSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTT-SSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHh-CcCCCCCCCcCCCh
Confidence 46788999999999999999999999999999999964 35789999999865
No 66
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.43 E-value=5.9e-14 Score=116.09 Aligned_cols=64 Identities=20% Similarity=0.363 Sum_probs=51.5
Q ss_pred CCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 015513 7 PQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWC 75 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~ 75 (405)
.+++.||||.+.|.|||+++|||+||+.||.+|+.. ..+||.|+.++.. ...|..+...|+.+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~---~~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR--KIECPICRKDIKS---KTYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT--CSBCTTTCCBCCC---EEECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc--CCcCCCCCCcCCC---CCCccchhHHHHHHH
Confidence 456899999999999999999999999999999975 4789999998854 234555555555543
No 67
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.43 E-value=7.4e-14 Score=111.25 Aligned_cols=69 Identities=20% Similarity=0.473 Sum_probs=58.4
Q ss_pred CCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcC-CCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 015513 7 PQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTA-KDTTCPVTKQPLPRDSGLTSNHTLRRLIQAWCT 76 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~-~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~~~ 76 (405)
.+++.||||.+.|++|++++|||+||+.||.+|+... +...||.|+.++.. .++.+|..+.++++.+..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK-RSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT-TTCBCCCSSSHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH-hhcCccHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999853 23589999999986 788888777777666654
No 68
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.42 E-value=2.5e-14 Score=114.51 Aligned_cols=70 Identities=19% Similarity=0.287 Sum_probs=59.1
Q ss_pred CCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC------CCCCcccHHHHHHHHHHH
Q 015513 5 EVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR------DSGLTSNHTLRRLIQAWC 75 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~------~~~~~~n~~l~~~I~~~~ 75 (405)
...++|.||||.+.|.+||+++|||+||+.||.+|+..+ ...||.|+..+.. ...+..|..|.+.|+.|.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA-SLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTT-TSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHC-cCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 345679999999999999999999999999999999653 5789999998752 145677888999988875
No 69
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.41 E-value=9.2e-12 Score=125.00 Aligned_cols=283 Identities=10% Similarity=0.043 Sum_probs=204.2
Q ss_pred chHHHHHHHHHhc----chhHHHHHHHHHHHHHHhhHH-----------------hHHHHH-HhchHHHHHHHHHhhccC
Q 015513 91 NKDQVRKLVRDLD----SGHLRISTLKKMEALAMENER-----------------NRKSLE-EAFVVRALVLFIITSYKG 148 (405)
Q Consensus 91 ~~~~i~~lv~~l~----~~~~~~~Al~~L~~l~~~~~~-----------------~r~~i~-~~g~v~~Lv~lL~~~~~~ 148 (405)
...+++.|+..|. +.+....+|.+|.++...++. +.+.+. +.+.|+.|+.+|.+.
T Consensus 58 g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~--- 134 (651)
T 3grl_A 58 GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF--- 134 (651)
T ss_dssp HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCC---
T ss_pred hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc---
Confidence 3567888888883 346677888999776543321 233444 469999999999754
Q ss_pred CCchhHHHHHHHHHhcCCCchh-hHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccH
Q 015513 149 NKTTGLEEALRILSLVWSPSNE-NKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNL 227 (405)
Q Consensus 149 ~~~~~~e~A~~~L~~L~~~~~~-~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~ 227 (405)
+...+..++.+|..|+...++ .++.|.... ++|+.|+.+|.. ....+|..|+.+|.+|+....+...++ ...
T Consensus 135 -df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p-~gi~~Lv~lL~d----~rE~iRneallLL~~Lt~~n~~iQklV-AFE 207 (651)
T 3grl_A 135 -DFHVRWPGVKLLTSLLKQLGPQVQQIILVSP-MGVSRLMDLLAD----SREVIRNDGVLLLQALTRSNGAIQKIV-AFE 207 (651)
T ss_dssp -CHHHHHHHHHHHHHHHHHSHHHHHHHHHHST-THHHHHHGGGGC----SSHHHHHHHHHHHHHHHTTCHHHHHHH-HHT
T ss_pred -cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCc-ccHHHHHHHHhC----chHHHHHHHHHHHHHHhcCCHHHHHHH-HHh
Confidence 234588999999999876555 777777553 399999999997 788899999999999999888888887 667
Q ss_pred HHHHHHHHHHhhcC---ChHHHHHHHHHHHHhccC-CchhHHHHhhcchHHHHHHhhcCCCCC------cHHH---HHHH
Q 015513 228 DFFKEMVKLLKENI---SQQATKSGLHVLLQACPM-GGNRVKITEANAVFELIELELTKPEKS------TTEL---IFNL 294 (405)
Q Consensus 228 g~i~~Lv~lL~~~~---~~~~~~~a~~aL~~L~~~-~~n~~~~v~~g~v~~Lv~lL~~~~~~~------~~e~---a~~~ 294 (405)
|+++.|+++++... ...+...++.+|.||..+ ..|+..+.+.|++|.|..+|..+ +.. ...+ ++.+
T Consensus 208 naFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~-~~~~~W~~Qk~~N~~~~L~i 286 (651)
T 3grl_A 208 NAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVG-DENSGWSAQKVTNLHLMLQL 286 (651)
T ss_dssp THHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCC-SCSSCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCC-ccccccHHHHHHHHHHHHHH
Confidence 99999999998741 237889999999999985 46999999999999999999764 221 1233 5666
Q ss_pred HHHHhcC-------HhhHHHHHhcccchHHHHHHHHcc--ChhhhHHHHHHHHHhcccCCCHHHHHHHHhcC--------
Q 015513 295 LAQLCSC-------ADGRLKFREHAGAIAMVTKRLLRV--SPATNDRAVHILSSISKFSATYEVVLEMLSVG-------- 357 (405)
Q Consensus 295 L~~L~~~-------~~~~~~i~~~~g~i~~Lv~~l~~~--s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G-------- 357 (405)
+..|+.. ..++.++.. .|+++.|+++++.. +...+..|+.++..+...+ ..++..+.+..
T Consensus 287 IrlLv~~~~~~~~t~~nQ~~~~~-~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN--~~~Q~~fa~~~vp~~~~~p 363 (651)
T 3grl_A 287 VRVLVSPNNPPGATSSCQKAMFQ-CGLLQQLCTILMATGVPADILTETINTVSEVIRGC--QVNQDYFASVNAPSNPPRP 363 (651)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHH-TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHCEESSSSCEE
T ss_pred HHHHhCCCCCCCCCHHHHHHHHH-CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCC--HHHHHHHhhccCCCCCCcC
Confidence 6667654 134556544 78999999966653 2455667777777777654 34666665532
Q ss_pred -hHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 358 -AVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 358 -~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
.+..|+.++.+..+...|-.|+..++..-.
T Consensus 364 ~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 364 AIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 233344445544577888888888886543
No 70
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.6e-13 Score=98.49 Aligned_cols=53 Identities=28% Similarity=0.509 Sum_probs=46.7
Q ss_pred CCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhc-CCCCCCCCCCCCCCC
Q 015513 5 EVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKT-AKDTTCPVTKQPLPR 57 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~-~~~~~cP~~~~~~~~ 57 (405)
.+++++.||||++.|.+|++++|||+||+.||.+|+.. .+...||.|++++..
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 46778999999999999999999999999999999963 235689999998865
No 71
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6.9e-13 Score=93.97 Aligned_cols=47 Identities=30% Similarity=0.527 Sum_probs=41.6
Q ss_pred CCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcC-CCCCCCCC
Q 015513 5 EVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTA-KDTTCPVT 51 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~-~~~~cP~~ 51 (405)
.+++++.||||++.|.+||+++|||+||+.||.+|+... +...||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 467889999999999999999999999999999999742 35689987
No 72
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.35 E-value=2.9e-13 Score=108.51 Aligned_cols=67 Identities=21% Similarity=0.357 Sum_probs=54.9
Q ss_pred CCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCc-ccHHHHHHHHHH
Q 015513 6 VPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLT-SNHTLRRLIQAW 74 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~-~n~~l~~~I~~~ 74 (405)
++++|.||||.++|.|||+++|||+||+.||.+|+... ...||.|+.++.. .++. ++..+.+.+..+
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~-~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVM-GSYCPSCRYPCFP-TDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCCG-GGCBCCCHHHHHHHHHC
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC-cCcCCCCCCCCCH-hhccccHHHHHHHHHHh
Confidence 34568999999999999999999999999999999863 5689999999976 5544 556666666544
No 73
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.34 E-value=5.9e-13 Score=94.98 Aligned_cols=55 Identities=16% Similarity=0.359 Sum_probs=47.5
Q ss_pred CcccCcCCcc-cCCCc----cccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccc
Q 015513 8 QYFICPISLQ-IMKDP----VTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSN 64 (405)
Q Consensus 8 ~~~~Cpi~~~-~m~dP----v~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n 64 (405)
+++.||||.+ .|.+| ++++|||+||+.||.+|+.++ ...||.|+.++.. .++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~-~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-AGNCPECGTPLRK-SNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-SSSCTTTCCCCSS-CCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC-CCcCCCCCCcccc-ccceee
Confidence 5789999999 99999 467999999999999998763 6789999999976 666654
No 74
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.33 E-value=5.6e-13 Score=114.34 Aligned_cols=68 Identities=24% Similarity=0.432 Sum_probs=60.2
Q ss_pred CCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 015513 5 EVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQAW 74 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~~ 74 (405)
.++++|.||||.++|++||+++|||+||+.||.+|+... ..+||.|+.++.. .++.++..+++.|..+
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~-~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLE-NQLFPDNFAKREILSL 81 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCG-GGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC-CCCCCCCccCcch-hhhhhhHHHHHHHhhc
Confidence 578889999999999999999999999999999999764 4589999999976 7788888888887764
No 75
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.30 E-value=2e-13 Score=112.94 Aligned_cols=69 Identities=14% Similarity=0.301 Sum_probs=55.1
Q ss_pred CCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC--------CCCCcccHHHHHHHHHH
Q 015513 5 EVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR--------DSGLTSNHTLRRLIQAW 74 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~--------~~~~~~n~~l~~~I~~~ 74 (405)
.++++|.||||.++|++||+++|||+||+.||.+|+..+ ...||.|+.++.. ...+.++..+++.|...
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L 103 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG-PQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL 103 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS-CEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC-CCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence 467889999999999999999999999999999999763 5689999986432 12355777777776543
No 76
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.29 E-value=1.2e-12 Score=95.18 Aligned_cols=58 Identities=17% Similarity=0.350 Sum_probs=49.6
Q ss_pred CCCCCcccCcCCcccCCCc-------cccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccc
Q 015513 4 IEVPQYFICPISLQIMKDP-------VTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSN 64 (405)
Q Consensus 4 ~~~~~~~~Cpi~~~~m~dP-------v~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n 64 (405)
....+++.||||.+.|.+| ++++|||+||+.||.+|+.. ..+||.|+.++.. .++.++
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~-~~~~~~ 69 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH-KRYHPI 69 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCC-CSCCCC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc--CCCCCCCCCccCh-hheeec
Confidence 3456789999999999999 88899999999999999976 3689999999975 666654
No 77
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=3e-12 Score=89.00 Aligned_cols=47 Identities=26% Similarity=0.625 Sum_probs=41.4
Q ss_pred CCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhc-CCCCCCCCC
Q 015513 5 EVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKT-AKDTTCPVT 51 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~-~~~~~cP~~ 51 (405)
.+.+++.||||++.|++|++++|||+||+.||.+|+.. .+...||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 46778999999999999999999999999999999764 235789987
No 78
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=5.9e-12 Score=95.48 Aligned_cols=54 Identities=20% Similarity=0.405 Sum_probs=47.2
Q ss_pred CCCCCcccCcCCcccCCC----ccccCCCCcccHHHHHHHHhcC-CCCCCCCCCCCCCC
Q 015513 4 IEVPQYFICPISLQIMKD----PVTAITGISYDRESIEKWLKTA-KDTTCPVTKQPLPR 57 (405)
Q Consensus 4 ~~~~~~~~Cpi~~~~m~d----Pv~~~~g~~~~r~~I~~~~~~~-~~~~cP~~~~~~~~ 57 (405)
..+.+++.||||.+.|.+ |++++|||+||+.||.+|+... +...||.|++++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 456788999999999999 9999999999999999999863 24689999998754
No 79
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.1e-12 Score=93.74 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=45.2
Q ss_pred CCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 5 EVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
...+++.||||++.|++||+++|||+||+.||.+|+.. ...||.|+..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL--GKRCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC--SSBCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC--CCcCcCcCchhCH
Confidence 34567999999999999999999999999999999865 4789999998754
No 80
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.20 E-value=1.9e-11 Score=90.02 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=45.2
Q ss_pred CCCCCcccCcCCcccC--CCccccC--CCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 4 IEVPQYFICPISLQIM--KDPVTAI--TGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 4 ~~~~~~~~Cpi~~~~m--~dPv~~~--~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
....+++.||||.+.| .|+++.+ |||+||+.||.+||.. +...||.||+++..
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 4567889999999999 5677776 9999999999999975 36789999999865
No 81
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=7.9e-12 Score=90.10 Aligned_cols=50 Identities=20% Similarity=0.407 Sum_probs=45.0
Q ss_pred CCCCcccCcCCcccCCCc-------cccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 5 EVPQYFICPISLQIMKDP-------VTAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dP-------v~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
..++++.||||++.|.+| ++++|||+||+.||.+|+.. ..+||.|+.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 467789999999999998 88999999999999999976 468999999875
No 82
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.19 E-value=4.7e-12 Score=89.84 Aligned_cols=54 Identities=19% Similarity=0.380 Sum_probs=46.6
Q ss_pred CcccCcCCcccCCCc-------cccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccc
Q 015513 8 QYFICPISLQIMKDP-------VTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSN 64 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dP-------v~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n 64 (405)
+++.||||++.|.+| ++++|||+||+.||.+|+.. ..+||.|+.++.. .++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~-~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH-KRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCBCTT-TCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCccCCc-cceeee
Confidence 568999999999998 78899999999999999976 4689999999875 555543
No 83
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.16 E-value=2.3e-11 Score=90.00 Aligned_cols=57 Identities=19% Similarity=0.368 Sum_probs=47.1
Q ss_pred CCCCcccCcCCcccCCCcc---ccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccc
Q 015513 5 EVPQYFICPISLQIMKDPV---TAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSN 64 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv---~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n 64 (405)
...+++.||||++.|.+|. +++|||+||+.||.+|+.. ..+||.|+..+.. ..+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~-~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ--HDSCPVCRKSLTG-QNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT--TCSCTTTCCCCCC-SCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc--CCcCcCcCCccCC-cccCCC
Confidence 4567799999999999874 4599999999999999965 4789999999875 555544
No 84
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.10 E-value=6.3e-09 Score=91.76 Aligned_cols=191 Identities=15% Similarity=0.055 Sum_probs=144.2
Q ss_pred hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHH
Q 015513 132 AFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKM 211 (405)
Q Consensus 132 ~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~ 211 (405)
.+.++.|+..|.+. +...+..|+..|..+.. .. +++.|+.+|.+ .+..++..|+.+|..
T Consensus 18 ~~~~~~L~~~L~~~----~~~vR~~A~~~L~~~~~-----------~~--~~~~L~~~l~~----~~~~vr~~a~~aL~~ 76 (211)
T 3ltm_A 18 PEKVEMYIKNLQDD----SYYVRRAAAYALGKIGD-----------ER--AVEPLIKALKD----EDAWVRRAAADALGQ 76 (211)
T ss_dssp GGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCC-----------GG--GHHHHHHHTTC----SCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHcCC----CHHHHHHHHHHHHHhCC-----------cc--HHHHHHHHHcC----CCHHHHHHHHHHHHh
Confidence 57899999999743 34568889888886642 23 79999999998 899999999999988
Q ss_pred HHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHH
Q 015513 212 VLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELI 291 (405)
Q Consensus 212 L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a 291 (405)
+. ..+.++.|+++|.++ ++.++..|+.+|..+.. .++++.|+++|.+. +..++..|
T Consensus 77 ~~------------~~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~a 132 (211)
T 3ltm_A 77 IG------------DERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-DWFVRIAA 132 (211)
T ss_dssp HC------------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-SHHHHHHH
T ss_pred hC------------CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC-CHHHHHHH
Confidence 73 235678999999987 89999999999998853 46889999999775 77899999
Q ss_pred HHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCc
Q 015513 292 FNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCE 371 (405)
Q Consensus 292 ~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~ 371 (405)
+.+|..+.. ...++.|++.+...+...+..++.+|..+.. ..+++.|..+++ +.+
T Consensus 133 ~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~-d~~ 187 (211)
T 3ltm_A 133 AFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------ERVRAAMEKLAE-TGT 187 (211)
T ss_dssp HHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------HHHHHHHHHHHH-HCC
T ss_pred HHHHHHcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------hhHHHHHHHHHh-CCC
Confidence 999998832 3478888885544455677777777777642 246777888887 568
Q ss_pred HHHHHHHHHHHHHhhcccCCC
Q 015513 372 KYLKDRAKEILRLHSNVWNNS 392 (405)
Q Consensus 372 ~~~k~~A~~ll~~l~~~~~~~ 392 (405)
+.+|..|...|..+.....++
T Consensus 188 ~~vr~~A~~aL~~~~~~~~~~ 208 (211)
T 3ltm_A 188 GFARKVAVNYLETHKSFNHHH 208 (211)
T ss_dssp HHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHhcCCCCCCC
Confidence 899999999999877754443
No 85
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.07 E-value=8.2e-11 Score=84.49 Aligned_cols=49 Identities=22% Similarity=0.440 Sum_probs=42.6
Q ss_pred CCcccCcCCcccCCCc-cccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDP-VTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dP-v~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.++..||||.+.+.+| ++++|||+||+.||.+|+.. ..+||.|+.++..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ--NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH--SCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC--cCcCcCCChhhHh
Confidence 3467899999999997 67899999999999999975 4689999998753
No 86
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=3.1e-11 Score=83.06 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=40.7
Q ss_pred CCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.+++.||||++.|.+|++++|||+||+.||.+| ...||.|++.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC-----CCCCCcCCcEeec
Confidence 467899999999999999999999999999873 4689999998754
No 87
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.03 E-value=1.4e-10 Score=79.48 Aligned_cols=47 Identities=26% Similarity=0.380 Sum_probs=41.6
Q ss_pred CcccCcCCcccCCC----ccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKD----PVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 8 ~~~~Cpi~~~~m~d----Pv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
+++.||||++.|.+ |++++|||.|++.||.+|+... .+||.|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 46789999999977 7888999999999999999864 78999998764
No 88
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.02 E-value=1.3e-10 Score=79.67 Aligned_cols=48 Identities=21% Similarity=0.529 Sum_probs=42.4
Q ss_pred CCCcccCcCCcccCCC---ccccC-CCCcccHHHHHHHHhcCCCCCCCCCCCCC
Q 015513 6 VPQYFICPISLQIMKD---PVTAI-TGISYDRESIEKWLKTAKDTTCPVTKQPL 55 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~d---Pv~~~-~g~~~~r~~I~~~~~~~~~~~cP~~~~~~ 55 (405)
+.++..||||++.|.+ +++++ |||.|++.||.+|+.. ..+||.|+.++
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--CCcCcCCCCEe
Confidence 4677899999999998 78887 9999999999999965 57899999876
No 89
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.02 E-value=8.2e-11 Score=96.31 Aligned_cols=54 Identities=19% Similarity=0.385 Sum_probs=47.1
Q ss_pred CCcccCcCCcccCCCc-------cccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 015513 7 PQYFICPISLQIMKDP-------VTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTS 63 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dP-------v~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~ 63 (405)
++++.||||++.|++| ++++|||+||+.||.+|+.. ..+||.|++.+.. ..+.+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~-~~l~~ 65 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH-KRYHP 65 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT--CSBCTTTCCBCTT-TCEEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh--CCCCCCCCCcCcc-ccccc
Confidence 5789999999999999 89999999999999999975 4689999999875 55444
No 90
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=3.7e-10 Score=82.45 Aligned_cols=51 Identities=22% Similarity=0.476 Sum_probs=44.5
Q ss_pred CCCCcccCcCCcccCCCcccc---CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 5 EVPQYFICPISLQIMKDPVTA---ITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv~~---~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
+..++..||||++.|.+|..+ +|||.|++.||.+|+... .+||.|+.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~--~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR--KVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC--SBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC--CcCCCcCccccc
Confidence 466788999999999988766 999999999999999864 589999998854
No 91
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=4.8e-11 Score=86.25 Aligned_cols=50 Identities=18% Similarity=0.395 Sum_probs=44.6
Q ss_pred CCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 5 EVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.+.+++.||||++.+.+ ++++|||+||+.||.+|+.. ..+||.|+.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR--HRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC--CSSCHHHHHCTTC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC--cCcCCCcCCcccC
Confidence 46778999999999999 99999999999999999863 5789999988864
No 92
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.01 E-value=3e-10 Score=81.73 Aligned_cols=51 Identities=22% Similarity=0.417 Sum_probs=42.9
Q ss_pred CCCCcccCcCCcccCC---CccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 5 EVPQYFICPISLQIMK---DPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~---dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
....+..||||++.|. ++++++|||.|++.||.+|+..+ .+||.|+..+..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN--KKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC--SBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC--CCCcCcCccccC
Confidence 4566789999999885 46788999999999999999863 579999998853
No 93
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.00 E-value=4.8e-08 Score=89.99 Aligned_cols=223 Identities=13% Similarity=0.019 Sum_probs=147.6
Q ss_pred HHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhh
Q 015513 94 QVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNEN 171 (405)
Q Consensus 94 ~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~ 171 (405)
.+..|+..+.+ +..+..|++.|..+. ..++++.|+.+|.+. +...+..|+.+|..+......
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~d~----~~~vR~~A~~aL~~l~~~~~~- 87 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDK----NYIRRDIGAFILGQIKICKKC- 87 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHTCS----SHHHHHHHHHHHHHSCCCTTT-
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC-----------CchHHHHHHHHHcCC----CHHHHHHHHHHHHHhcccccc-
Confidence 46778888854 477888888887764 235788899988754 235688999999888643211
Q ss_pred HHhhcccchhHHHHHHH-HHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHH
Q 015513 172 KALVDHHNQDLIGALMW-VLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGL 250 (405)
Q Consensus 172 ~~~i~~~g~~~i~~Lv~-lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 250 (405)
+ .. .++.|.. ++.. .+..++..|+++|..+...... ....+++.|+.+|.++ ++.++..|+
T Consensus 88 ---~--~~--l~~~L~~~~~~d----~~~~vr~~a~~aL~~l~~~~~~------~~~~~~~~L~~~l~d~-~~~vR~~a~ 149 (280)
T 1oyz_A 88 ---E--DN--VFNILNNMALND----KSACVRATAIESTAQRCKKNPI------YSPKIVEQSQITAFDK-STNVRRATA 149 (280)
T ss_dssp ---H--HH--HHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHHCGG------GHHHHHHHHHHHTTCS-CHHHHHHHH
T ss_pred ---c--hH--HHHHHHHHHhcC----CCHHHHHHHHHHHHHHhccCCc------ccHHHHHHHHHHhhCC-CHHHHHHHH
Confidence 0 01 3444443 3444 7889999999999998753311 1346788889988887 889999999
Q ss_pred HHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhh
Q 015513 251 HVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATN 330 (405)
Q Consensus 251 ~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~ 330 (405)
.+|.++.. .+++|.|++++.+. +..++..|+.+|..+... ....++.|++.+...+...+
T Consensus 150 ~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~---------~~~~~~~L~~~l~d~~~~vR 209 (280)
T 1oyz_A 150 FAISVIND----------KATIPLLINLLKDP-NGDVRNWAAFAININKYD---------NSDIRDCFVEMLQDKNEEVR 209 (280)
T ss_dssp HHHHTC-------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCC---------CHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHhcCC----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccC---------cHHHHHHHHHHhcCCCHHHH
Confidence 99887653 35888999988774 677888899988887421 12356677774433345566
Q ss_pred HHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 015513 331 DRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHS 386 (405)
Q Consensus 331 e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~ 386 (405)
..++.+|..+. ...+++.|+.+++.+ .+|..|...|..+.
T Consensus 210 ~~A~~aL~~~~-------------~~~~~~~L~~~l~d~---~vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 210 IEAIIGLSYRK-------------DKRVLSVLCDELKKN---TVYDDIIEAAGELG 249 (280)
T ss_dssp HHHHHHHHHTT-------------CGGGHHHHHHHHTSS---SCCHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-------------CHhhHHHHHHHhcCc---cHHHHHHHHHHhcC
Confidence 66666666554 124566677776531 25666666665553
No 94
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.99 E-value=2.2e-10 Score=87.22 Aligned_cols=50 Identities=24% Similarity=0.466 Sum_probs=43.6
Q ss_pred CCCcccCcCCcccCCC---ccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 6 VPQYFICPISLQIMKD---PVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~d---Pv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
..++..||||++.|.+ +++++|||.|++.||.+|+.. +.+||.|+..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK--SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT--TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc--CCcCcCcCccCCC
Confidence 4566899999999988 888999999999999999975 4689999998753
No 95
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.97 E-value=5.6e-08 Score=84.89 Aligned_cols=187 Identities=14% Similarity=0.086 Sum_probs=144.2
Q ss_pred CCCchHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcC
Q 015513 88 SALNKDQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVW 165 (405)
Q Consensus 88 ~~~~~~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~ 165 (405)
++........+++.+.+ ...+..|+..|..+.. .++++.|+.+|.+. +...+..|+.+|..+.
T Consensus 9 ~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~----~~~vr~~a~~~L~~~~ 73 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE----DAWVRRAAADALGQIG 73 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS----SHHHHHHHHHHHHHHC
T ss_pred cccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCC----CHHHHHHHHHHHHhhC
Confidence 34557788899999965 4888889888876532 36789999999643 3456888988888764
Q ss_pred CCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHH
Q 015513 166 SPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQA 245 (405)
Q Consensus 166 ~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~ 245 (405)
. .. +++.|+..|.+ .++.++..|+++|..+.. ..+++.|+++|.++ ++.+
T Consensus 74 ~-----------~~--~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~-~~~v 123 (201)
T 3ltj_A 74 D-----------ER--AVEPLIKALKD----EDGWVRQSAAVALGQIGD------------ERAVEPLIKALKDE-DWFV 123 (201)
T ss_dssp C-----------GG--GHHHHHHHTTC----SSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCS-SHHH
T ss_pred C-----------HH--HHHHHHHHHcC----CCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHcCC-CHHH
Confidence 1 13 78999999997 899999999999988632 34678899999887 8999
Q ss_pred HHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHcc
Q 015513 246 TKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRV 325 (405)
Q Consensus 246 ~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~ 325 (405)
+..|+.+|..+.. ..+++.|+.++.+. +..++..|+.+|..+.. ..+++.|.+.+...
T Consensus 124 r~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~ 181 (201)
T 3ltj_A 124 RIAAAFALGEIGD----------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG 181 (201)
T ss_dssp HHHHHHHHHHHTC----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC
Confidence 9999999988853 46899999999875 77899999999999831 23567777755555
Q ss_pred ChhhhHHHHHHHHHhc
Q 015513 326 SPATNDRAVHILSSIS 341 (405)
Q Consensus 326 s~~~~e~a~~~L~~L~ 341 (405)
+...+..|..+|..+.
T Consensus 182 ~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 182 TGFARKVAVNYLETHK 197 (201)
T ss_dssp CHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6677788877777654
No 96
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.97 E-value=3.4e-08 Score=87.01 Aligned_cols=188 Identities=15% Similarity=0.103 Sum_probs=142.9
Q ss_pred chHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCc
Q 015513 91 NKDQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPS 168 (405)
Q Consensus 91 ~~~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~ 168 (405)
++..+..|++.+.+ ...+..|+..|..+.. .++++.|+.+|.+. +..++..|+.+|..+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~----~~~vr~~a~~aL~~~~~-- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE----DAWVRRAAADALGQIGD-- 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS----CHHHHHHHHHHHHHHCC--
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCC----CHHHHHHHHHHHHhhCC--
Confidence 35678888888865 4788888888876531 47889999999743 34568899999987741
Q ss_pred hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHH
Q 015513 169 NENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKS 248 (405)
Q Consensus 169 ~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~ 248 (405)
.. +++.|+..|.+ .++.++..|+.+|..+.. .+.++.|+++|+++ ++.++..
T Consensus 80 ---------~~--~~~~L~~~l~~----~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~-~~~vr~~ 131 (211)
T 3ltm_A 80 ---------ER--AVEPLIKALKD----EDGWVRQSAAVALGQIGD------------ERAVEPLIKALKDE-DWFVRIA 131 (211)
T ss_dssp ---------GG--GHHHHHHHTTC----SSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCS-SHHHHHH
T ss_pred ---------HH--HHHHHHHHHcC----CCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHhCC-CHHHHHH
Confidence 23 78999999987 899999999999988732 35678899999887 8999999
Q ss_pred HHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChh
Q 015513 249 GLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPA 328 (405)
Q Consensus 249 a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~ 328 (405)
|+.+|..+.. ..+++.|+.++.+. +..++..|+.+|..+.. ..+++.|.+.+...+..
T Consensus 132 a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~ 189 (211)
T 3ltm_A 132 AAFALGEIGD----------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGF 189 (211)
T ss_dssp HHHHHHHHCC----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHcCC----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHH
Confidence 9999998853 35889999999774 77899999999999842 33567777766556678
Q ss_pred hhHHHHHHHHHhcccCC
Q 015513 329 TNDRAVHILSSISKFSA 345 (405)
Q Consensus 329 ~~e~a~~~L~~L~~~~~ 345 (405)
.+..|..+|..+.....
T Consensus 190 vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 190 ARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHHHC------
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 88888888888776543
No 97
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.96 E-value=4.9e-08 Score=85.23 Aligned_cols=186 Identities=15% Similarity=0.059 Sum_probs=143.9
Q ss_pred hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHH
Q 015513 132 AFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKM 211 (405)
Q Consensus 132 ~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~ 211 (405)
.+..+.++.+|.+. +...+..|+..|..+.. .. +++.|+..|.+ ++..++..|+.+|..
T Consensus 13 ~~~~~~~i~~L~~~----~~~vr~~A~~~L~~~~~-----------~~--~~~~L~~~l~~----~~~~vr~~a~~~L~~ 71 (201)
T 3ltj_A 13 PEKVEMYIKNLQDD----SYYVRRAAAYALGKIGD-----------ER--AVEPLIKALKD----EDAWVRRAAADALGQ 71 (201)
T ss_dssp HHHHHHHHHHTTCS----CHHHHHHHHHHHHHHCC-----------GG--GHHHHHHHTTC----SSHHHHHHHHHHHHH
T ss_pred CcchHHHHHHhcCC----CHHHHHHHHHHHHhcCC-----------hh--HHHHHHHHHcC----CCHHHHHHHHHHHHh
Confidence 46788889998754 24568889999986642 23 78999999987 899999999999987
Q ss_pred HHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHH
Q 015513 212 VLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELI 291 (405)
Q Consensus 212 L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a 291 (405)
+. ..++++.|+++|.++ ++.++..|+++|..+.. ..+++.|+++|.+. +..++..|
T Consensus 72 ~~------------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~a 127 (201)
T 3ltj_A 72 IG------------DERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-DWFVRIAA 127 (201)
T ss_dssp HC------------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-SHHHHHHH
T ss_pred hC------------CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCC-CHHHHHHH
Confidence 63 235678999999987 89999999999998753 35889999999775 77899999
Q ss_pred HHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCc
Q 015513 292 FNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCE 371 (405)
Q Consensus 292 ~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~ 371 (405)
+.+|..+.. ...++.|++.+...+...+..++.+|..+.. ..+++.|..+++ +.+
T Consensus 128 ~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-------------~~~~~~L~~~l~-d~~ 182 (201)
T 3ltj_A 128 AFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------ERVRAAMEKLAE-TGT 182 (201)
T ss_dssp HHHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------HHHHHHHHHHHH-HCC
T ss_pred HHHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------hhHHHHHHHHHh-CCC
Confidence 999998842 3578888885544455677777777777631 236778888887 568
Q ss_pred HHHHHHHHHHHHHhhc
Q 015513 372 KYLKDRAKEILRLHSN 387 (405)
Q Consensus 372 ~~~k~~A~~ll~~l~~ 387 (405)
+.+|..|...|..+..
T Consensus 183 ~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 183 GFARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8999999999887653
No 98
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=3.5e-10 Score=82.85 Aligned_cols=49 Identities=16% Similarity=0.447 Sum_probs=43.0
Q ss_pred CCcccCcCCcccCCCc---cccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDP---VTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dP---v~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.++..||||++.|.++ ++++|||.|++.||.+|+.. ..+||.|+.++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA--NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH--CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc--CCcCcCcCCcCCC
Confidence 4567899999999998 77899999999999999976 3689999998854
No 99
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.93 E-value=7.9e-10 Score=88.00 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=43.1
Q ss_pred CCCcccCcCCcccCCCcc------------------ccCCCCcccHHHHHHHHhc---CCCCCCCCCCCCCCC
Q 015513 6 VPQYFICPISLQIMKDPV------------------TAITGISYDRESIEKWLKT---AKDTTCPVTKQPLPR 57 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m~dPv------------------~~~~g~~~~r~~I~~~~~~---~~~~~cP~~~~~~~~ 57 (405)
.+.+..||||++.|.+|+ +++|||.|++.||.+|+.. ..+.+||.||..+..
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 345679999999999886 6799999999999999963 125689999998754
No 100
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.90 E-value=2.8e-10 Score=83.04 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=40.4
Q ss_pred CCcccCcCCcccCCCccccCCCCc-ccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDPVTAITGIS-YDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~-~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.+++.||||++.++|||+++|||+ ||+.|+.+| ..||.|+.++..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC------ccCCCcCcCccC
Confidence 346899999999999999999999 999999988 479999998753
No 101
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.85 E-value=6.8e-09 Score=108.13 Aligned_cols=194 Identities=13% Similarity=0.072 Sum_probs=137.3
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHH-HHHhhcCChHHHHHHHHHHHHhccC-
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMV-KLLKENISQQATKSGLHVLLQACPM- 259 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv-~lL~~~~~~~~~~~a~~aL~~L~~~- 259 (405)
.|.+++..|++ .++..|..|+++|.+|+.+.+.+..+. ..|+|.+++ .+|.+. +.+++..|+++|+||+..
T Consensus 35 ~i~Pll~~L~S----~~~~~r~~A~~al~~l~~~~~~~~l~~--~~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 35 KILPVLKDLKS----PDAKSRTTAAGAIANIVQDAKCRKLLL--REQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp TTHHHHHHHSS----SCCSHHHHHHHHHHHHTTSHHHHHHHH--HTTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCC----CCHHHHHHHHHHHHHHHcCcHHHHHHH--HcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhc
Confidence 45567788998 899999999999999998776666655 567777765 467776 899999999999999974
Q ss_pred -CchhHHHHhhcchHHHHHHhhcC--------C--CC----------CcHHHHHHHHHHHhcCHh-hHHHHHhcccchHH
Q 015513 260 -GGNRVKITEANAVFELIELELTK--------P--EK----------STTELIFNLLAQLCSCAD-GRLKFREHAGAIAM 317 (405)
Q Consensus 260 -~~n~~~~v~~g~v~~Lv~lL~~~--------~--~~----------~~~e~a~~~L~~L~~~~~-~~~~i~~~~g~i~~ 317 (405)
.+.+..+++.|++++|..+|... . +. .+.+.++.+|++||...+ ....+.. .++++.
T Consensus 108 g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l~~ 186 (684)
T 4gmo_A 108 EADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTILR 186 (684)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHHHH
T ss_pred CchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccHHH
Confidence 46788899999999999998531 0 00 234568889999996444 4555544 689999
Q ss_pred HHHHHHccC---hhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHH--hccCcHHHHHHHHHHHHHhh
Q 015513 318 VTKRLLRVS---PATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVT--QADCEKYLKDRAKEILRLHS 386 (405)
Q Consensus 318 Lv~~l~~~s---~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll--~~~~~~~~k~~A~~ll~~l~ 386 (405)
|+..|.... ......+..+|..|+..+ ....+.+.+.|....+..++ ..+ ++..|..++.+|..+.
T Consensus 187 l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn--~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 187 LLFRLISADIAPQDIYEEAISCLTTLSEDN--LKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHhccC--HHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence 999776543 345667778888887544 34677777776533322222 223 3334556666666543
No 102
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.84 E-value=1.7e-07 Score=86.21 Aligned_cols=223 Identities=8% Similarity=-0.001 Sum_probs=153.5
Q ss_pred hHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHh-hccCCCchhHHHHHHHHHhcCCCc
Q 015513 92 KDQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIIT-SYKGNKTTGLEEALRILSLVWSPS 168 (405)
Q Consensus 92 ~~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~-~~~~~~~~~~e~A~~~L~~L~~~~ 168 (405)
+..++.|++.+.+ +..+..|++.|..+.... ..++.++.+|.+ ...+.+..++..|+.+|..+...+
T Consensus 53 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~----------~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~ 122 (280)
T 1oyz_A 53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK----------KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN 122 (280)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT----------TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc----------ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC
Confidence 4456777777754 367788888886654211 123333333321 001223456889999998875322
Q ss_pred hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHH
Q 015513 169 NENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKS 248 (405)
Q Consensus 169 ~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~ 248 (405)
+.. ... +++.|+..|.+ .++.++..|+.+|.++.. .++++.|+.+|+++ ++.++..
T Consensus 123 ~~~-----~~~--~~~~L~~~l~d----~~~~vR~~a~~aL~~~~~------------~~~~~~L~~~l~d~-~~~vr~~ 178 (280)
T 1oyz_A 123 PIY-----SPK--IVEQSQITAFD----KSTNVRRATAFAISVIND------------KATIPLLINLLKDP-NGDVRNW 178 (280)
T ss_dssp GGG-----HHH--HHHHHHHHTTC----SCHHHHHHHHHHHHTC---------------CCHHHHHHHHTCS-SHHHHHH
T ss_pred Ccc-----cHH--HHHHHHHHhhC----CCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHcCC-CHHHHHH
Confidence 110 112 78889999987 899999999999987643 24578999999987 8999999
Q ss_pred HHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChh
Q 015513 249 GLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPA 328 (405)
Q Consensus 249 a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~ 328 (405)
|+++|..+... ...+++.|+.+|.+. +..++..|+.+|..+. ....++.|++.+.. +.
T Consensus 179 a~~aL~~~~~~--------~~~~~~~L~~~l~d~-~~~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d--~~ 236 (280)
T 1oyz_A 179 AAFAININKYD--------NSDIRDCFVEMLQDK-NEEVRIEAIIGLSYRK-----------DKRVLSVLCDELKK--NT 236 (280)
T ss_dssp HHHHHHHHTCC--------CHHHHHHHHHHTTCS-CHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHTS--SS
T ss_pred HHHHHHhhccC--------cHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhC-----------CHhhHHHHHHHhcC--cc
Confidence 99999988532 135789999999875 7789999999999874 24578899885532 34
Q ss_pred hhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHH
Q 015513 329 TNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILR 383 (405)
Q Consensus 329 ~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~ 383 (405)
.+..++.+|..+.. ..+++.|..+++.+.++.....+...|+
T Consensus 237 vr~~a~~aL~~i~~-------------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 237 VYDDIIEAAGELGD-------------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp CCHHHHHHHHHHCC-------------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCc-------------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 67777777776642 2578899999986666666666665554
No 103
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.81 E-value=2.2e-09 Score=101.94 Aligned_cols=48 Identities=17% Similarity=0.359 Sum_probs=43.2
Q ss_pred cccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 9 YFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
...||||.+.+.+||+++|||+||..||.+|+... ...||.||.++..
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~-~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE-GQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT-CSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC-CCCCCCCCCccCC
Confidence 47999999999999999999999999999999743 5789999998864
No 104
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2.2e-09 Score=78.48 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=39.1
Q ss_pred CCcccCcCCcccCCCccccCCCCc-ccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDPVTAITGIS-YDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~-~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.+++.||||++.+++||+++|||+ ||+.|+.+ ...||.|+.++..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH------CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC------CCCCccCCceecC
Confidence 345799999999999999999999 99999953 2579999998854
No 105
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=1.1e-09 Score=84.04 Aligned_cols=68 Identities=9% Similarity=0.121 Sum_probs=48.8
Q ss_pred CCcccCcCCcccCCCcccc---CCCCcccHHHHHHHHhc---CC---CCCCCC--CCCC--CCCCCCCcccHHHHHHHHH
Q 015513 7 PQYFICPISLQIMKDPVTA---ITGISYDRESIEKWLKT---AK---DTTCPV--TKQP--LPRDSGLTSNHTLRRLIQA 73 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~---~~g~~~~r~~I~~~~~~---~~---~~~cP~--~~~~--~~~~~~~~~n~~l~~~I~~ 73 (405)
.+.|.||||.+.+.+|+++ +|||+||+.||.+||.. .+ ...||. |+.. +.. ....+....++++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~--~~i~~ll~~~~~~k 80 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE--NEIECMVAAEIMQR 80 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH--HHHHHHSCHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH--HHHHHHCCHHHHHH
Confidence 3578999999999999876 69999999999999863 12 246999 9887 542 22223333455566
Q ss_pred HHH
Q 015513 74 WCT 76 (405)
Q Consensus 74 ~~~ 76 (405)
|..
T Consensus 81 y~~ 83 (94)
T 1wim_A 81 YKK 83 (94)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 106
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.76 E-value=9.7e-08 Score=99.40 Aligned_cols=198 Identities=12% Similarity=0.110 Sum_probs=140.9
Q ss_pred hHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHH-HHHhhccCCCchhHHHHHHHHHhcCCC-
Q 015513 92 KDQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVL-FIITSYKGNKTTGLEEALRILSLVWSP- 167 (405)
Q Consensus 92 ~~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~-lL~~~~~~~~~~~~e~A~~~L~~L~~~- 167 (405)
...|.++++.|.+ +..|..|+.+|.+++. ++.+|..+...|+|..++. +|.+ .+.+++++|+++|.||+.+
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D----~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTD----NNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTC----SCHHHHHHHHHHHHHHHHHS
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCC----CCHHHHHHHHHHHHHHHhhc
Confidence 4567889999965 4899999999999995 7888999999999987655 5653 3356799999999999854
Q ss_pred chhhHHhhcccchhHHHHHHHHHhhhc-------CC---Cc-------HHhHHHHHHHHHHHHhhhccchhhhcccHHHH
Q 015513 168 SNENKALVDHHNQDLIGALMWVLQWEN-------ND---RH-------VAVKTSAMIVLKMVLELASKGLLESTLNLDFF 230 (405)
Q Consensus 168 ~~~~~~~i~~~g~~~i~~Lv~lL~~~~-------~~---~~-------~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i 230 (405)
.++....+...| +++.|..+|++.. .. .. .+..++++.+|.+|+...+.....+ ...+++
T Consensus 108 g~d~~~~l~~~~--il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v-~~~~~l 184 (684)
T 4gmo_A 108 EADFCVHLYRLD--VLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAV-ATKQTI 184 (684)
T ss_dssp CHHHHHHHHHTT--HHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH-HTCHHH
T ss_pred CchHHHHHHHcC--hHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH-HhcccH
Confidence 345667777777 9999998886410 00 00 1234578889999987655444333 356899
Q ss_pred HHHHHHHhhc--CChHHHHHHHHHHHHhccCC-chhHHHHhhcchH---HHHHHhhcCCCCCcHHHHHHHHHHHh
Q 015513 231 KEMVKLLKEN--ISQQATKSGLHVLLQACPMG-GNRVKITEANAVF---ELIELELTKPEKSTTELIFNLLAQLC 299 (405)
Q Consensus 231 ~~Lv~lL~~~--~~~~~~~~a~~aL~~L~~~~-~n~~~~v~~g~v~---~Lv~lL~~~~~~~~~e~a~~~L~~L~ 299 (405)
+.|+.+|.+. ...+++..|+.+|+.|+... +....+.+.|... .++.+... +...+..++++|.|+.
T Consensus 185 ~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~--~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 185 LRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG--TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS--SCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC--CcHHHHHHHHHHHhHh
Confidence 9999998653 34689999999999999854 4555566655433 23333232 4456778899999874
No 107
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.75 E-value=1.6e-09 Score=88.49 Aligned_cols=55 Identities=18% Similarity=0.361 Sum_probs=47.5
Q ss_pred CCcccCcCCcccCCCc-------cccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccc
Q 015513 7 PQYFICPISLQIMKDP-------VTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSN 64 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dP-------v~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n 64 (405)
++.+.||||++.|.+| ++++|||+||..||.+|++. ..+||.|+.++.. .++.++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~-~~~~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH-KRYHPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH--CSBCTTTCCBCCG-GGEEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc--CCCCCCCCCcCCh-hcceee
Confidence 4568999999999998 88899999999999999986 4699999999875 565554
No 108
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.74 E-value=9.3e-07 Score=94.30 Aligned_cols=274 Identities=12% Similarity=0.100 Sum_probs=178.7
Q ss_pred HHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHH--HH--HhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCC
Q 015513 93 DQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKS--LE--EAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWS 166 (405)
Q Consensus 93 ~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~--i~--~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~ 166 (405)
+-++.|+..+.+ ...+..|+..|..++++.+..-.. +. -.+.++.++.++. +.+..++..|+.+|..+..
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~----~~~~~vR~~A~~aL~~~~~ 203 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK----HSSPKIRSHAVACVNQFII 203 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTT----CSSHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHh
Confidence 346667777754 367888999999888754432110 00 1234555555554 3345678999999988875
Q ss_pred CchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHH
Q 015513 167 PSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQAT 246 (405)
Q Consensus 167 ~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~ 246 (405)
..+. ....... ..++.+...+.. ++.+++..|+.+|..++........-. -.++++.+..++++. +..++
T Consensus 204 ~~~~--~~~~~~~-~~l~~l~~~~~d----~~~~vr~~a~~~L~~l~~~~~~~~~~~--l~~l~~~l~~~~~~~-~~~vr 273 (852)
T 4fdd_A 204 SRTQ--ALMLHID-SFIENLFALAGD----EEPEVRKNVCRALVMLLEVRMDRLLPH--MHNIVEYMLQRTQDQ-DENVA 273 (852)
T ss_dssp TTCH--HHHTSHH-HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCHHHHGGG--HHHHHHHHHHHHTCS-SHHHH
T ss_pred cccH--HHHHHHH-HHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHhCHHHHHHH--HHHHHHHHHHHccCC-cHHHH
Confidence 4322 2211111 277888888876 889999999999999987543221111 136788888888887 88999
Q ss_pred HHHHHHHHHhccCCchhHHHHh--hcchHHHHHHhh----------cC-----------CCCCcHHHHHHHHHHHhcCHh
Q 015513 247 KSGLHVLLQACPMGGNRVKITE--ANAVFELIELEL----------TK-----------PEKSTTELIFNLLAQLCSCAD 303 (405)
Q Consensus 247 ~~a~~aL~~L~~~~~n~~~~v~--~g~v~~Lv~lL~----------~~-----------~~~~~~e~a~~~L~~L~~~~~ 303 (405)
..|+.++..++.....+..+-. ...+|.|+..+. .+ .+-.++..|..+|..|+....
T Consensus 274 ~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~ 353 (852)
T 4fdd_A 274 LEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR 353 (852)
T ss_dssp HHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc
Confidence 9999999999976544432211 256777777762 11 122457889999999885432
Q ss_pred hHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHH
Q 015513 304 GRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILR 383 (405)
Q Consensus 304 ~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~ 383 (405)
. .++. ..++.+.+.+...+...++.|+.+|..++...++ .... .-.+.++.|+.+++ +..+.+|..|++.+.
T Consensus 354 ~--~~~~--~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~--~~~~-~l~~~l~~l~~~l~-d~~~~Vr~~a~~~l~ 425 (852)
T 4fdd_A 354 D--ELLP--HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ--GMIP-YLPELIPHLIQCLS-DKKALVRSITCWTLS 425 (852)
T ss_dssp G--GGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH--HHGG-GHHHHHHHHHHHTT-CSSHHHHHHHHHHHH
T ss_pred H--HHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH--HHHH-HHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 1 2222 2456666644444567888999999999876542 1222 22457888888886 678999999999998
Q ss_pred Hhhcc
Q 015513 384 LHSNV 388 (405)
Q Consensus 384 ~l~~~ 388 (405)
.+...
T Consensus 426 ~l~~~ 430 (852)
T 4fdd_A 426 RYAHW 430 (852)
T ss_dssp HTHHH
T ss_pred HHHHH
Confidence 77764
No 109
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.73 E-value=6e-09 Score=73.54 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=43.4
Q ss_pred CCCCCcccCcCCcccCCCcccc--CCCCc-ccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 4 IEVPQYFICPISLQIMKDPVTA--ITGIS-YDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 4 ~~~~~~~~Cpi~~~~m~dPv~~--~~g~~-~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
.+-+++..|+||++-++|++++ +|||. ||..|+.+|+.. ...||+||+++.
T Consensus 3 l~~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~ 56 (64)
T 2vje_A 3 LPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR--NKPCPVCRQPIQ 56 (64)
T ss_dssp --CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT--TCCCTTTCCCCC
T ss_pred CCCCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc--CCcCCCcCcchh
Confidence 3445678999999999999987 99999 899999999975 468999999874
No 110
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=9.2e-09 Score=76.34 Aligned_cols=47 Identities=21% Similarity=0.378 Sum_probs=39.4
Q ss_pred CcccCcCCcccCCC--------------cccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKD--------------PVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 8 ~~~~Cpi~~~~m~d--------------Pv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
++-.|+||++.|.+ ++++ +|||.|.+.||.+|+.. +.+||.||+++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ--NNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT--CCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh--CCCCCCcCCCcc
Confidence 45679999999988 4455 59999999999999976 469999999874
No 111
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.64 E-value=1.3e-08 Score=71.49 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=41.8
Q ss_pred CcccCcCCcccCCCcccc--CCCCc-ccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKDPVTA--ITGIS-YDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~--~~g~~-~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
.+..|+||++-++|++++ ||||. ||..|+.+|+.. ...||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA--GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchhh
Confidence 456899999999999988 99999 999999999975 368999999874
No 112
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.58 E-value=1.8e-06 Score=92.13 Aligned_cols=272 Identities=11% Similarity=0.019 Sum_probs=167.7
Q ss_pred HHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHH
Q 015513 96 RKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKA 173 (405)
Q Consensus 96 ~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~ 173 (405)
+.++..+++ ...+..|++.|..++...+..-.... .+.++.++.++++. +..++..|+..+..++... ..++
T Consensus 218 ~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~----~~~vr~~a~e~l~~l~~~~-~~~~ 291 (852)
T 4fdd_A 218 ENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQ----DENVALEACEFWLTLAEQP-ICKD 291 (852)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCS----SHHHHHHHHHHHHHHTTST-THHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCC----cHHHHHHHHHHHHHHhcch-hHHH
Confidence 334444433 47888899999988876544211111 24677777766532 2356888999999988653 3344
Q ss_pred hhcccchhHHHHHHHHHh----------hhc-CC-------CcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHH
Q 015513 174 LVDHHNQDLIGALMWVLQ----------WEN-ND-------RHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVK 235 (405)
Q Consensus 174 ~i~~~g~~~i~~Lv~lL~----------~~~-~~-------~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~ 235 (405)
.+...-...+|.++..+. ... .+ .+...+..|+.+|..|+..... .+. ..+++.|..
T Consensus 292 ~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~---~~l~~~l~~ 366 (852)
T 4fdd_A 292 VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELL---PHILPLLKE 366 (852)
T ss_dssp HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHH---HHHHHHHHH
Confidence 332211025566655552 100 00 1123578899999999865432 222 367888888
Q ss_pred HHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhh--HHHHHhccc
Q 015513 236 LLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADG--RLKFREHAG 313 (405)
Q Consensus 236 lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~--~~~i~~~~g 313 (405)
++.+. ++..++.|+.+|.+++........-.-.+++|.|+.++.+. +..++..|+++|.+++..... ..... ..
T Consensus 367 ~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ 442 (852)
T 4fdd_A 367 LLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTYL--KP 442 (852)
T ss_dssp HHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTTTTH--HH
T ss_pred HhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHHHHH--HH
Confidence 89887 89999999999999998654321112257889999999775 778999999999999863221 11111 24
Q ss_pred chHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 015513 314 AIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHS 386 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~ 386 (405)
.++.|++.+...+...++.|..+|.+++...+.. ... .. .+.++.|+.+++.. .......+...+..+.
T Consensus 443 ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~-l~~-~l-~~ll~~L~~~l~~~-~~~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 443 LMTELLKRILDSNKRVQEAACSAFATLEEEACTE-LVP-YL-AYILDTLVFAFSKY-QHKNLLILYDAIGTLA 511 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG-GGG-GH-HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh-hHh-HH-HHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence 6777887554556688899999999988654321 111 11 35677777777643 3333333444444443
No 113
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.56 E-value=1.2e-08 Score=75.29 Aligned_cols=45 Identities=11% Similarity=0.265 Sum_probs=39.7
Q ss_pred CCcccCcCCcccCCCccccCCCCc-ccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDPVTAITGIS-YDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~-~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.++..|+||++.++|||++||||. ||+.|+.+|+ .||.|+.++..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~------~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ------SCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS------BCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC------cCCCCCchhhC
Confidence 456789999999999999999999 9999998763 79999998754
No 114
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.53 E-value=6.2e-08 Score=75.44 Aligned_cols=46 Identities=22% Similarity=0.444 Sum_probs=39.2
Q ss_pred cccCcCCcccCCCc------------------cccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 9 YFICPISLQIMKDP------------------VTAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 9 ~~~Cpi~~~~m~dP------------------v~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
+-.|+||.+.|.+| ++++|||.|.+.||.+|+.. +.+||.|++++.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 45799999999987 34689999999999999975 578999998763
No 115
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.50 E-value=3.8e-06 Score=85.06 Aligned_cols=254 Identities=9% Similarity=0.010 Sum_probs=152.7
Q ss_pred hHHHHHHHHHHHHHHhhHH-hHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHH
Q 015513 106 HLRISTLKKMEALAMENER-NRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIG 184 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~-~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~ 184 (405)
..+..|+..|..++..-.. .+....-...+|.+..++.+ .+..++..++.+|..++..-. +.... .. .+|
T Consensus 296 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d----~~~~vR~~a~~~l~~l~~~~~--~~~~~-~~--l~p 366 (588)
T 1b3u_A 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD----ANQHVKSALASVIMGLSPILG--KDNTI-EH--LLP 366 (588)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC----SCHHHHHHHHTTGGGGHHHHC--HHHHH-HH--THH
T ss_pred HHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhh--HhHHH-HH--HHH
Confidence 4455555555554432211 01111123445556666543 233557777777777653110 01111 12 677
Q ss_pred HHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhH
Q 015513 185 ALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRV 264 (405)
Q Consensus 185 ~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~ 264 (405)
.+..+++. .+.+++..++..|..+...-.... . ....++.|..++++. +..++..++.+|..++..-...
T Consensus 367 ~l~~~l~d----~~~~Vr~~a~~~l~~l~~~~~~~~-~---~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~- 436 (588)
T 1b3u_A 367 LFLAQLKD----ECPEVRLNIISNLDCVNEVIGIRQ-L---SQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE- 436 (588)
T ss_dssp HHHHHHTC----SCHHHHHHHHTTCHHHHHHSCHHH-H---HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG-
T ss_pred HHHHHhCC----CchHHHHHHHHHHHHHHHhcCHHH-H---HHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH-
Confidence 88888886 788999999999888875432111 1 246788888888876 8899999999998887521111
Q ss_pred HHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccC
Q 015513 265 KITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFS 344 (405)
Q Consensus 265 ~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~ 344 (405)
+.....+|.++.+|.+. +..+++.|+.+|..++..-.... .. ...+|.|++.+...+...+..++.++..++...
T Consensus 437 -~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~-~~--~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~ 511 (588)
T 1b3u_A 437 -FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKEW-AH--ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC 511 (588)
T ss_dssp -GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHHH-HH--HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCchh-HH--HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhc
Confidence 12234678888888764 66789999999999875432221 11 236677766332233456667777777776432
Q ss_pred CCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhccc
Q 015513 345 ATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVW 389 (405)
Q Consensus 345 ~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~ 389 (405)
+ ........++.|+.+++ +..+.+|..+...|..+.+..
T Consensus 512 ~-----~~~~~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~ 550 (588)
T 1b3u_A 512 G-----QDITTKHMLPTVLRMAG-DPVANVRFNVAKSLQKIGPIL 550 (588)
T ss_dssp H-----HHHHHHHTHHHHHHGGG-CSCHHHHHHHHHHHHHHGGGS
T ss_pred C-----HHHHHHHHHHHHHhhCC-CCCchHHHHHHHHHHHHHHHh
Confidence 1 11223346677777766 567788888888887776643
No 116
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.48 E-value=4.5e-06 Score=81.83 Aligned_cols=279 Identities=12% Similarity=0.090 Sum_probs=172.8
Q ss_pred HHHHHHHHHhc----chhHHHHHHHHHHHHHHhh-HHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCC
Q 015513 93 DQVRKLVRDLD----SGHLRISTLKKMEALAMEN-ERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSP 167 (405)
Q Consensus 93 ~~i~~lv~~l~----~~~~~~~Al~~L~~l~~~~-~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~ 167 (405)
+-++.|+..+. +...+..|+..|..++++. +..-... -...++.++.+|.+.. .+..++..|+.++.++...
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~--~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEE--PSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 34666677664 3467888999999998753 2110111 1246677777776431 1345688899999886532
Q ss_pred chhhHH-hhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccH-HHHHHHHHHHhhcCChHH
Q 015513 168 SNENKA-LVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNL-DFFKEMVKLLKENISQQA 245 (405)
Q Consensus 168 ~~~~~~-~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~-g~i~~Lv~lL~~~~~~~~ 245 (405)
-.+.-. ... .. ..++.+...+.+ .+.+++..++.+|..++........-. -. +.++.++..+++. +..+
T Consensus 205 ~~~~~~~~~~-~~-~l~~~l~~~~~~----~~~~vr~~~~~~l~~l~~~~~~~~~~~--~~~~l~~~~~~~~~~~-~~~v 275 (462)
T 1ibr_B 205 TKANFDKESE-RH-FIMQVVCEATQC----PDTRVRVAALQNLVKIMSLYYQYMETY--MGPALFAITIEAMKSD-IDEV 275 (462)
T ss_dssp THHHHTSHHH-HH-HHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHCGGGCTTT--TTTTHHHHHHHHHHCS-SHHH
T ss_pred HHHhhhhhHH-HH-HHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcCC-chHH
Confidence 211100 000 01 135555555554 788999999999999987543221111 12 6778788888776 8899
Q ss_pred HHHHHHHHHHhccCCc------------------hhHHHHh---hcchHHHHHHhhcC------CCCCcHHHHHHHHHHH
Q 015513 246 TKSGLHVLLQACPMGG------------------NRVKITE---ANAVFELIELELTK------PEKSTTELIFNLLAQL 298 (405)
Q Consensus 246 ~~~a~~aL~~L~~~~~------------------n~~~~v~---~g~v~~Lv~lL~~~------~~~~~~e~a~~~L~~L 298 (405)
+..|+..+..++.... ....+++ ...+|.+++.+... .+..++..|+.+|..|
T Consensus 276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l 355 (462)
T 1ibr_B 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHH
Confidence 9999999988876420 0111221 34677788877542 1236788899999998
Q ss_pred hcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHH
Q 015513 299 CSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRA 378 (405)
Q Consensus 299 ~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A 378 (405)
+..-. ..++. ..++.+.+.+.......++.++.++..++.....+ .....+ ...++.++..|+ +..+.+|..|
T Consensus 356 ~~~~~--~~~~~--~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~-~~~~~l-~~~~~~l~~~l~-d~~~~Vr~~a 428 (462)
T 1ibr_B 356 ATCCE--DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS-QLKPLV-IQAMPTLIELMK-DPSVVVRDTA 428 (462)
T ss_dssp HHHTT--TTHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT-TTCTTT-TTHHHHHHHGGG-CSCHHHHHHH
T ss_pred HHhcc--HHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHH-HHHHHH-HHHHHHHHHHhc-CCCHHHHHHH
Confidence 75322 12222 24555555333334577888999999998754311 111111 457888999887 5689999999
Q ss_pred HHHHHHhhcccC
Q 015513 379 KEILRLHSNVWN 390 (405)
Q Consensus 379 ~~ll~~l~~~~~ 390 (405)
++.|..+.....
T Consensus 429 ~~~l~~~~~~~~ 440 (462)
T 1ibr_B 429 AWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHHhcc
Confidence 999998887543
No 117
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=2e-07 Score=68.58 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=43.1
Q ss_pred CCCcccCcCCcccC--CCccccCCC-----CcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 6 VPQYFICPISLQIM--KDPVTAITG-----ISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m--~dPv~~~~g-----~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
..++..|+||++-+ .+|+++||+ |.|-+.||.+|+...+..+||+|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34567899999877 468888996 99999999999986434689999998864
No 118
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.42 E-value=1.1e-05 Score=81.74 Aligned_cols=252 Identities=10% Similarity=0.032 Sum_probs=161.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHH
Q 015513 105 GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIG 184 (405)
Q Consensus 105 ~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~ 184 (405)
...|..|...|..++...+.. ....-.++.+..+..+. +...+..|+.+|..++..-.. ... .. .++
T Consensus 101 ~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~----~~~~R~~a~~~l~~~~~~~~~---~~~-~~--l~~ 167 (588)
T 1b3u_A 101 TVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGD----WFTSRTSACGLFSVCYPRVSS---AVK-AE--LRQ 167 (588)
T ss_dssp HHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCS----SHHHHHHHGGGHHHHTTTSCH---HHH-HH--HHH
T ss_pred HHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHHHhcCH---HHH-HH--HHH
Confidence 478889999999888754432 12233455555554322 234577888888887654322 111 22 677
Q ss_pred HHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhH
Q 015513 185 ALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRV 264 (405)
Q Consensus 185 ~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~ 264 (405)
.+..++.. .++.+|..|+.+|..++..-.... . ....++.|..++.++ ++.+++.|+.+|..++..-...
T Consensus 168 ~l~~l~~d----~~~~VR~~a~~~l~~l~~~~~~~~--~--~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~- 237 (588)
T 1b3u_A 168 YFRNLCSD----DTPMVRRAAASKLGEFAKVLELDN--V--KSEIIPMFSNLASDE-QDSVRLLAVEACVNIAQLLPQE- 237 (588)
T ss_dssp HHHHHHTC----SCHHHHHHHHHHHHHHHHTSCHHH--H--HHTHHHHHHHHHTCS-CHHHHTTHHHHHHHHHHHSCHH-
T ss_pred HHHHHhCC----CCHHHHHHHHHHHHHHHHHhcHHh--H--HHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCHH-
Confidence 77788776 899999999999999986533221 1 246788899999887 8899999999999988643221
Q ss_pred HHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccC
Q 015513 265 KITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFS 344 (405)
Q Consensus 265 ~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~ 344 (405)
.....++|.+..++.+. +..++..++.+|..++..... ..+. ...++.+++.+.......++.+..+|..++...
T Consensus 238 -~~~~~~~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~-~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 312 (588)
T 1b3u_A 238 -DLEALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGP-EITK--TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp -HHHHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCH-HHHH--HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTS
T ss_pred -HHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHhCc-ccch--hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh
Confidence 22345788888888764 667899999999999753221 1111 236788888554445577888888888888754
Q ss_pred CCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 015513 345 ATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHS 386 (405)
Q Consensus 345 ~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~ 386 (405)
+.. .+....-...++.+..+++ +.+..+|..|+..|..+.
T Consensus 313 ~~~-~~~~~~~~~l~p~l~~~l~-d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 313 SAD-CRENVIMSQILPCIKELVS-DANQHVKSALASVIMGLS 352 (588)
T ss_dssp CTT-THHHHHHHTHHHHHHHHHT-CSCHHHHHHHHTTGGGGH
T ss_pred Chh-hhhhHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHH
Confidence 432 1111112234555555554 445666666665555443
No 119
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=3e-07 Score=65.51 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=39.4
Q ss_pred CCcccCcCCcccCCCccccCCCCc-ccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDPVTAITGIS-YDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~-~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.++..|+||++..+|+|++||||. ||..|+.+ ...||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH------CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc------CCCCCCCCcchhc
Confidence 456899999999999999999999 99999883 3589999998754
No 120
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.30 E-value=2e-05 Score=80.49 Aligned_cols=186 Identities=12% Similarity=0.071 Sum_probs=123.5
Q ss_pred hHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHH
Q 015513 134 VVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVL 213 (405)
Q Consensus 134 ~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~ 213 (405)
.++.+.++|.+ .++.++..|+.+|..+....++ .+...+ .++.|..+|.. .++.++..|+.+|..++
T Consensus 122 l~~~l~~~L~d----~~~~VRk~A~~al~~i~~~~p~---~~~~~~--~~~~l~~lL~d----~d~~V~~~A~~aL~~i~ 188 (591)
T 2vgl_B 122 LCEPLRKCLKD----EDPYVRKTAAVCVAKLHDINAQ---MVEDQG--FLDSLRDLIAD----SNPMVVANAVAALSEIS 188 (591)
T ss_dssp HHHHHHHHSSC----SCHHHHHHHHHHHHHHHHSSCC---CHHHHH--HHHHHHHTTSC----SCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCC----CChHHHHHHHHHHHHHHhhChh---hccccc--HHHHHHHHhCC----CChhHHHHHHHHHHHHH
Confidence 35556666653 3345688999999888654433 232234 78999999987 89999999999999998
Q ss_pred hhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHH
Q 015513 214 ELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFN 293 (405)
Q Consensus 214 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~ 293 (405)
.......... ...+.+..|+..+.+. ++-.+...+++|..++..++.. ...+++.+..+|.+. +..+.-.|+.
T Consensus 189 ~~~~~~~~~~-l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~-~~~V~~ea~~ 261 (591)
T 2vgl_B 189 ESHPNSNLLD-LNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHA-NSAVVLSAVK 261 (591)
T ss_dssp TSCCSCCSCC-CHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSS-TTHHHHHHHH
T ss_pred hhCCCccchh-ccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCC-ChHHHHHHHH
Confidence 7654331122 2457788899888876 7778888888888887543211 134677777777764 7788899999
Q ss_pred HHHHHhc----CHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcc
Q 015513 294 LLAQLCS----CADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISK 342 (405)
Q Consensus 294 ~L~~L~~----~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~ 342 (405)
++..+.. .++....+.. ...++|+. +.......+-.++.+|..+..
T Consensus 262 ~i~~l~~~~~~~~~~~~~~~~--~~~~~L~~-L~~~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 262 VLMKFLELLPKDSDYYNMLLK--KLAPPLVT-LLSGEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp HHHHSCCSCCBTTBSHHHHHH--HTHHHHHH-HTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCHHHHHHHHH--HHHHHHHH-HhcCCccHHHHHHHHHHHHHH
Confidence 9999863 2333333322 34566665 444444555666666665543
No 121
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.21 E-value=4.8e-05 Score=77.66 Aligned_cols=260 Identities=13% Similarity=0.091 Sum_probs=159.1
Q ss_pred HHHHHHHHHhcch--hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchh
Q 015513 93 DQVRKLVRDLDSG--HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNE 170 (405)
Q Consensus 93 ~~i~~lv~~l~~~--~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~ 170 (405)
.....+++.+.++ ..+.-+.-.+..+++.+++.. .-++..+.+-|. +.+...+..|+.+|.++.. ++
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~----~~n~~ir~~AL~~L~~i~~--~~ 117 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCE----DPNPLIRALAVRTMGCIRV--DK 117 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSS----SSSHHHHHHHHHHHHTCCS--GG
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcC----CCCHHHHHHHHHHHHcCCh--HH
Confidence 3566677766554 445445555566665443321 122333333333 3344568889999988852 22
Q ss_pred hHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHH
Q 015513 171 NKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGL 250 (405)
Q Consensus 171 ~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 250 (405)
+.+ . .++.+..+|.+ .++.+|..|+.+|..+...... .+ ...++++.|..+|.+. ++.++.+|+
T Consensus 118 ----~~~-~--l~~~l~~~L~d----~~~~VRk~A~~al~~i~~~~p~--~~--~~~~~~~~l~~lL~d~-d~~V~~~A~ 181 (591)
T 2vgl_B 118 ----ITE-Y--LCEPLRKCLKD----EDPYVRKTAAVCVAKLHDINAQ--MV--EDQGFLDSLRDLIADS-NPMVVANAV 181 (591)
T ss_dssp ----GHH-H--HHHHHHHHSSC----SCHHHHHHHHHHHHHHHHSSCC--CH--HHHHHHHHHHHTTSCS-CHHHHHHHH
T ss_pred ----HHH-H--HHHHHHHHcCC----CChHHHHHHHHHHHHHHhhChh--hc--ccccHHHHHHHHhCCC-ChhHHHHHH
Confidence 121 2 57778888887 8999999999999999874432 22 2358899999999987 899999999
Q ss_pred HHHHHhccCCchh-HHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhh
Q 015513 251 HVLLQACPMGGNR-VKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPAT 329 (405)
Q Consensus 251 ~aL~~L~~~~~n~-~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~ 329 (405)
.+|..++...... ..-...+.++.|+..+.+. ++-.+-..+.+|..++..++.-. ...++.+...+...+...
T Consensus 182 ~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V 255 (591)
T 2vgl_B 182 AALSEISESHPNSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAV 255 (591)
T ss_dssp HHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHH
T ss_pred HHHHHHHhhCCCccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHH
Confidence 9999999865322 1112235677788887764 55556667777777764322110 123455544232234455
Q ss_pred hHHHHHHHHHhcccC-CCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 330 NDRAVHILSSISKFS-ATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 330 ~e~a~~~L~~L~~~~-~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
.-.|+.++..+.... .+++..+.+. ..+.+.|+.++. .++.+|..|...|..+...
T Consensus 256 ~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~--~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 256 VLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS--GEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp HHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT--SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc--CCccHHHHHHHHHHHHHHh
Confidence 666777777766421 1111233332 244567776653 5778898888877766654
No 122
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.18 E-value=2.2e-07 Score=73.35 Aligned_cols=45 Identities=24% Similarity=0.516 Sum_probs=0.0
Q ss_pred ccCcCCcccCCCc-----------------cc-cCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDP-----------------VT-AITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 10 ~~Cpi~~~~m~dP-----------------v~-~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
-.|+||++.|.+| ++ .+|||.|.+.||.+|+.. +.+||.|+.++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWE 111 (117)
T ss_dssp -----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCCeee
Confidence 4799999999885 22 489999999999999976 478999998753
No 123
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.09 E-value=4.1e-05 Score=68.70 Aligned_cols=187 Identities=10% Similarity=0.035 Sum_probs=131.1
Q ss_pred HHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHh-hcCChHHHHHHHHHHHHhccCCch-
Q 015513 185 ALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLK-ENISQQATKSGLHVLLQACPMGGN- 262 (405)
Q Consensus 185 ~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~aL~~L~~~~~n- 262 (405)
.+...+.+ .+...|..|+..|..+........ .. .....++.|..++. +. +..++..|+.+|..|+..-..
T Consensus 19 ~l~~~l~s----~~w~~R~~a~~~L~~l~~~~~~~~-~~-~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~ 91 (242)
T 2qk2_A 19 DFYDKLEE----KKWTLRKESLEVLEKLLTDHPKLE-NG-EYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKR 91 (242)
T ss_dssp THHHHHTC----SSHHHHHHHHHHHHHHHHHCSSBC-CC-CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHhhhcc----CCHHHHHHHHHHHHHHHccCCCCC-CC-CHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhh
Confidence 36677777 899999999999999987622111 11 22477888999994 76 899999999999999963221
Q ss_pred hHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcc
Q 015513 263 RVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISK 342 (405)
Q Consensus 263 ~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~ 342 (405)
-...+ .-.+|+|++.+.+. ...+++.|..+|..++.... -. ..++.|...+...+...++.++..|..+..
T Consensus 92 ~~~~~-~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 92 FSNYA-SACVPSLLEKFKEK-KPNVVTALREAIDAIYASTS-LE------AQQESIVESLSNKNPSVKSETALFIARALT 162 (242)
T ss_dssp GHHHH-HHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 11222 34889999999875 67899999999999986432 11 245666664444456788889999988544
Q ss_pred cC-CCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccC
Q 015513 343 FS-ATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWN 390 (405)
Q Consensus 343 ~~-~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~ 390 (405)
.. ++......+ . ..++.|+.+|. +...++|..|...+..+.+..+
T Consensus 163 ~~~~~~~~~~~l-~-~l~p~l~~~l~-D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 163 RTQPTALNKKLL-K-LLTTSLVKTLN-EPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp TCCGGGCCHHHH-H-HHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHC
T ss_pred HcCCCCccHHHH-H-HHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHcC
Confidence 32 221112222 2 46788888886 6789999999999998887665
No 124
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.98 E-value=0.0013 Score=69.62 Aligned_cols=276 Identities=13% Similarity=0.124 Sum_probs=166.9
Q ss_pred HHHHHHHHhc----chhHHHHHHHHHHHHHHhhHHhHHHHHH--hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCC
Q 015513 94 QVRKLVRDLD----SGHLRISTLKKMEALAMENERNRKSLEE--AFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSP 167 (405)
Q Consensus 94 ~i~~lv~~l~----~~~~~~~Al~~L~~l~~~~~~~r~~i~~--~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~ 167 (405)
-++.++..+. +...+..++..|..++..-.. +.+.. ...++.+...+.+.. .+...+..|+.+|..+...
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~--~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEE--PSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTC--SCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHHHHH
Confidence 4556666663 346788899999988864211 11111 345566666665331 1345688899999887642
Q ss_pred chhh-HHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHH
Q 015513 168 SNEN-KALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQAT 246 (405)
Q Consensus 168 ~~~~-~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~ 246 (405)
-... ........ .++.+...+.. .+.+.+..|+.+|..+.........-. .....++.+...+.+. +..++
T Consensus 205 ~~~~~~~~~~~~~--il~~l~~~~~~----~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~~-~~~v~ 276 (876)
T 1qgr_A 205 TKANFDKESERHF--IMQVVCEATQC----PDTRVRVAALQNLVKIMSLYYQYMETY-MGPALFAITIEAMKSD-IDEVA 276 (876)
T ss_dssp CHHHHTSHHHHHH--HHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHSGGGCHHH-HTTTHHHHHHHHHTCS-SHHHH
T ss_pred HHHHHHhHHHHHH--HHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHhcCC-chHHH
Confidence 1111 00000011 45666666665 788999999999999986543221111 1125677777777665 78899
Q ss_pred HHHHHHHHHhccCCc---------------------hh-HHHHhhcchHHHHHHhhcC------CCCCcHHHHHHHHHHH
Q 015513 247 KSGLHVLLQACPMGG---------------------NR-VKITEANAVFELIELELTK------PEKSTTELIFNLLAQL 298 (405)
Q Consensus 247 ~~a~~aL~~L~~~~~---------------------n~-~~~v~~g~v~~Lv~lL~~~------~~~~~~e~a~~~L~~L 298 (405)
..|+..+..++.... +. .... ...+|.++..+... .+..++..|..+|..|
T Consensus 277 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l 355 (876)
T 1qgr_A 277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHH
Confidence 999999988875310 00 0111 34678888888532 1346788888899888
Q ss_pred hcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHH
Q 015513 299 CSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRA 378 (405)
Q Consensus 299 ~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A 378 (405)
+..... .++ ...++.+...+...+...++.++.++..++.....+ .....+ ...++.|+..+. +..+.+|..|
T Consensus 356 ~~~~~~--~~~--~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~-~~~~~~-~~~l~~l~~~l~-d~~~~vr~~a 428 (876)
T 1qgr_A 356 ATCCED--DIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS-QLKPLV-IQAMPTLIELMK-DPSVVVRDTA 428 (876)
T ss_dssp HHHHGG--GGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH-HHHHHH-HHHHHHHHHHHT-CSSHHHHHHH
T ss_pred HHHCcH--hhH--HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHH-HHHHHH-HHHHHHHHHHhC-CCCHHHHHHH
Confidence 753221 111 124444444333334567888888998888754412 222222 347888888887 5678999999
Q ss_pred HHHHHHhhccc
Q 015513 379 KEILRLHSNVW 389 (405)
Q Consensus 379 ~~ll~~l~~~~ 389 (405)
.++|..+.+..
T Consensus 429 ~~~l~~~~~~~ 439 (876)
T 1qgr_A 429 AWTVGRICELL 439 (876)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99998877754
No 125
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.94 E-value=0.00038 Score=60.92 Aligned_cols=228 Identities=15% Similarity=0.132 Sum_probs=155.4
Q ss_pred chHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCc-hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHH
Q 015513 133 FVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPS-NENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKM 211 (405)
Q Consensus 133 g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~-~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~ 211 (405)
+.+..|..+|.+. +...+.+|+.+|.++-+.- ...+..+.+. .++.++.++++ .+..+..+|+.+|..
T Consensus 33 ~~l~~L~~LL~dk----D~~vk~raL~~LeellK~~~~~l~~~~~e~---~Ld~iI~llk~----~dEkval~A~r~L~~ 101 (265)
T 3b2a_A 33 RALFLILELAGED----DETTRLRAFVALGEILKRADSDLRMMVLER---HLDVFINALSQ----ENEKVTIKALRALGY 101 (265)
T ss_dssp HHHHHHHHHTTSS----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHH---HHHHHHHTCCS----TTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcc----chHHHHHHHHHHHHHHHhccccccHHHHHH---HHHHHHHHHhc----cchhHHHHHHHHHHH
Confidence 4677888888533 2356889999998876542 2234444443 79999999987 899999999999999
Q ss_pred HHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHH
Q 015513 212 VLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELI 291 (405)
Q Consensus 212 L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a 291 (405)
|-...+-...-. .-.+..|.++++++ +.-....|+..|..|.-....+ +++..+.+++.+. +..++..+
T Consensus 102 LLe~vpL~~~~y---~Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Sk-d~~vK~ag 170 (265)
T 3b2a_A 102 LVKDVPMGSKTF---LKAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSP-DLYTKVAG 170 (265)
T ss_dssp HHTTCCBCHHHH---HHHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHcCCCCCHHHH---HHHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCC-ChhHHHHH
Confidence 976544222221 24677888888877 8899999999999994333333 3456788888664 88899999
Q ss_pred HHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHh-ccC
Q 015513 292 FNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQ-ADC 370 (405)
Q Consensus 292 ~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~-~~~ 370 (405)
+.+|.+++...+...-+-.-..+|+-+++ ...+...+.|..+|..+.+..--++....+. .+...+.-+- -.+
T Consensus 171 l~~L~eia~~S~D~~i~~~I~~eI~elL~---~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~---~~~~~v~~l~~~~~ 244 (265)
T 3b2a_A 171 FCLFLNMLNSSADSGHLTLILDEIPSLLQ---NDNEFIVELALDVLEKALSFPLLENVKIELL---KISRIVDGLVYREG 244 (265)
T ss_dssp HHHHHHHGGGCSSCCCGGGTTTTHHHHHT---CSCHHHHHHHHHHHHHHTTSCCCSCCHHHHH---HHHHHHHHGGGCSS
T ss_pred HHHHHHhhcccCCHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCcccHhHHHHHH---HHHHHHHHHHHhcC
Confidence 99999999755432222111235666655 5566789999999999887643322333322 2333443333 467
Q ss_pred cHHHHHHHHHHHHHhhcc
Q 015513 371 EKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 371 ~~~~k~~A~~ll~~l~~~ 388 (405)
.+..+.+|+..-..+..+
T Consensus 245 ~~~~~~ka~~v~~~le~~ 262 (265)
T 3b2a_A 245 APIIRLKAKKVSDLIDSV 262 (265)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHh
Confidence 899999999877766544
No 126
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.94 E-value=0.0008 Score=71.21 Aligned_cols=277 Identities=10% Similarity=0.069 Sum_probs=162.8
Q ss_pred HHHHHHHhc--c--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhcc-----------CCCchhHHHHHH
Q 015513 95 VRKLVRDLD--S--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYK-----------GNKTTGLEEALR 159 (405)
Q Consensus 95 i~~lv~~l~--~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~-----------~~~~~~~e~A~~ 159 (405)
+..|+..+. + ...+..++..|..++...+....... ...++.++..|..... +.....+..++.
T Consensus 500 l~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 578 (861)
T 2bpt_A 500 VDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILT 578 (861)
T ss_dssp HHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHH
Confidence 344445553 2 46677888888888775443222221 2467777777764200 001123556777
Q ss_pred HHHhcCCCch-hhHHhhcccchhHHHHHHHHHhhhcCCCcH-HhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHH
Q 015513 160 ILSLVWSPSN-ENKALVDHHNQDLIGALMWVLQWENNDRHV-AVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLL 237 (405)
Q Consensus 160 ~L~~L~~~~~-~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~-~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL 237 (405)
+|..+...-. .....+ . ..++.++..++. .+. .+++.+..++..++........-. -...++.|...+
T Consensus 579 ~l~~l~~~~~~~~~~~~---~-~l~~~l~~~l~~----~~~~~v~~~~~~~l~~l~~~~~~~~~~~--l~~i~~~l~~~l 648 (861)
T 2bpt_A 579 VLAAVIRKSPSSVEPVA---D-MLMGLFFRLLEK----KDSAFIEDDVFYAISALAASLGKGFEKY--LETFSPYLLKAL 648 (861)
T ss_dssp HHHHHHHHCGGGTGGGH---H-HHHHHHHHHHHS----TTGGGTHHHHHHHHHHHHHHHGGGGHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHH---H-HHHHHHHHHHcc----CCCCcHHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHh
Confidence 7777653221 111111 1 267788888886 545 789999999999876543222111 236788889888
Q ss_pred hhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCC-CCCcHHHHHHHHHHHhcCH-hhHHHHHhcccch
Q 015513 238 KENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKP-EKSTTELIFNLLAQLCSCA-DGRLKFREHAGAI 315 (405)
Q Consensus 238 ~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~-~~~~~e~a~~~L~~L~~~~-~~~~~i~~~~g~i 315 (405)
++. ++.++..++.++..++..-.....-.-...++.+++.+.+.. +..+++.++.+|..++... +.-...+. ..+
T Consensus 649 ~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l 725 (861)
T 2bpt_A 649 NQV-DSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIM 725 (861)
T ss_dssp HCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHH
T ss_pred ccc-cHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHH
Confidence 765 778999999999988864332111112467888888887641 3789999999999998643 22222222 356
Q ss_pred HHHHHHHHccC-----------hhhhHHHHHHHHHhcccCCCHHHHHHHHh---cChHHHHHHHHhccC----cHHHHHH
Q 015513 316 AMVTKRLLRVS-----------PATNDRAVHILSSISKFSATYEVVLEMLS---VGAVSKLCMVTQADC----EKYLKDR 377 (405)
Q Consensus 316 ~~Lv~~l~~~s-----------~~~~e~a~~~L~~L~~~~~~~~~~~~~~~---~G~v~~Ll~ll~~~~----~~~~k~~ 377 (405)
|.+++.+.... ...++.++.++..++..-++. ...+. ...++.|...++ +. +..+|+.
T Consensus 726 ~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~---~~~~~~~~~~i~~~l~~~~~-d~~~~~~~~vr~~ 801 (861)
T 2bpt_A 726 ALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK---PEALFPYVGTIFQFIAQVAE-DPQLYSEDATSRA 801 (861)
T ss_dssp HHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC---HHHHGGGHHHHHHHHHHHHH-CHHHHTSHHHHHH
T ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHHHHc-CcccCCcHHHHHH
Confidence 77777432111 123455666666666433211 11111 112333334444 32 6789999
Q ss_pred HHHHHHHhhccc
Q 015513 378 AKEILRLHSNVW 389 (405)
Q Consensus 378 A~~ll~~l~~~~ 389 (405)
|..++..+.+.+
T Consensus 802 a~~~l~~l~~~~ 813 (861)
T 2bpt_A 802 AVGLIGDIAAMF 813 (861)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc
Confidence 999999999887
No 127
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.93 E-value=0.00058 Score=70.02 Aligned_cols=244 Identities=10% Similarity=0.062 Sum_probs=142.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHH
Q 015513 105 GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIG 184 (405)
Q Consensus 105 ~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~ 184 (405)
+.+|.+|+.++..+...+++.. .+.++.+..+|.+ .+..++..|+.+|..++..+++....+. . .+|
T Consensus 156 ~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D----~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~--~v~ 222 (618)
T 1w63_A 156 SYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNE----KNHGVLHTSVVLLTEMCERSPDMLAHFR--K--LVP 222 (618)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTC----CCHHHHHHHHHHHHHHCCSHHHHHHHHH--T--THH
T ss_pred HHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCC----CCHhHHHHHHHHHHHHHHhChHHHHHHH--H--HHH
Confidence 4666666666666665444322 1445555555542 2345678888899988876544322222 2 677
Q ss_pred HHHHHHhhhc-----------CCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhc-----CChHHHHH
Q 015513 185 ALMWVLQWEN-----------NDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKEN-----ISQQATKS 248 (405)
Q Consensus 185 ~Lv~lL~~~~-----------~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~-----~~~~~~~~ 248 (405)
.++.+|.... ...++-.+...+.+|..++..+... ....++.|-.++... .+..+.-.
T Consensus 223 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~------~~~~~~~L~~l~~~~~~~~~~~~aV~~e 296 (618)
T 1w63_A 223 QLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS------SEAMNDILAQVATNTETSKNVGNAILYE 296 (618)
T ss_dssp HHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH------HHTTHHHHHHHHHTSCCSSTHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHHhccccccchHHHHHHH
Confidence 7887776310 0036778888888888887543211 112334444444321 13467777
Q ss_pred HHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChh
Q 015513 249 GLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPA 328 (405)
Q Consensus 249 a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~ 328 (405)
|++++..+...+ .+. ..++..|..+|.+. +..++..|+.+|..++... ..++. .....++..+......
T Consensus 297 a~~~i~~l~~~~----~l~-~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~---p~~~~--~~~~~i~~~l~d~d~~ 365 (618)
T 1w63_A 297 TVLTIMDIKSES----GLR-VLAINILGRFLLNN-DKNIRYVALTSLLKTVQTD---HNAVQ--RHRSTIVDCLKDLDVS 365 (618)
T ss_dssp HHHHHHHSCCCH----HHH-HHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHH---HHHHG--GGHHHHHHGGGSSCHH
T ss_pred HHHHHHhcCCCH----HHH-HHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhC---HHHHH--HHHHHHHHHccCCChh
Confidence 788887775432 122 24678888888774 7788999999998887532 22222 1345555534333456
Q ss_pred hhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 329 TNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 329 ~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
.+..|+.+|..+++... ... .+..|+..+. +.+...|..+...+..+...
T Consensus 366 Ir~~alelL~~l~~~~n----v~~-----iv~eL~~~l~-~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 366 IKRRAMELSFALVNGNN----IRG-----MMKELLYFLD-SCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHHHHHHHCCSSS----THH-----HHHHHHHHHH-HCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccccc----HHH-----HHHHHHHHHH-hCCHHHHHHHHHHHHHHHHH
Confidence 77888888888886432 222 2456666666 34667777777666655553
No 128
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.92 E-value=0.00048 Score=73.09 Aligned_cols=258 Identities=11% Similarity=0.033 Sum_probs=149.4
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCch-h-hHHhhcccchhHH
Q 015513 106 HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSN-E-NKALVDHHNQDLI 183 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~-~-~~~~i~~~g~~~i 183 (405)
..+..|+..|..++..... ..++.++.++.....+.+...++.|+.+|..++.... + ....+ . ..+
T Consensus 343 ~~r~~a~~~l~~l~~~~~~--------~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~--~~l 410 (876)
T 1qgr_A 343 NPCKAAGVCLMLLATCCED--------DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--I--QAM 410 (876)
T ss_dssp CHHHHHHHHHHHHHHHHGG--------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--H--HHH
T ss_pred HHHHHHHHHHHHHHHHCcH--------hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--H--HHH
Confidence 6677888888888764331 2234444444332223334568999999999986532 2 22222 1 278
Q ss_pred HHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccc---hhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCC
Q 015513 184 GALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKG---LLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMG 260 (405)
Q Consensus 184 ~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~---~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~ 260 (405)
+.++..|.. .+..+|..|+++|.+++..-... ... -...++.|+..|.+ ++.++..++++|.+++...
T Consensus 411 ~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~---l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 411 PTLIELMKD----PSVVVRDTAAWTVGRICELLPEAAINDVY---LAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEAA 481 (876)
T ss_dssp HHHHHHHTC----SSHHHHHHHHHHHHHHHHHCGGGTSSTTT---HHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC----CCHHHHHHHHHHHHHHHHhCchhcccHHH---HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHh
Confidence 888888887 78999999999999998764321 111 24788889998876 4788999999999988531
Q ss_pred c---------------hhHHHHhhcchHHHHHHhhcCC--CCCcHHHHHHHHHHHhcCH---------------------
Q 015513 261 G---------------NRVKITEANAVFELIELELTKP--EKSTTELIFNLLAQLCSCA--------------------- 302 (405)
Q Consensus 261 ~---------------n~~~~v~~g~v~~Lv~lL~~~~--~~~~~e~a~~~L~~L~~~~--------------------- 302 (405)
. .-.... ..++|.|+..+.... +..++..++.+|..|+...
T Consensus 482 ~~~~~~~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 560 (876)
T 1qgr_A 482 YEAADVADDQEEPATYCLSSSF-ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQ 560 (876)
T ss_dssp HHTTSCTTSCCCCCCCSSTTTH-HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccchhhhHhH-HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHH
Confidence 1 000111 346777777775431 2345555666555554310
Q ss_pred -----------hh-------HH-------HHHhcc----------cchHHHHHHHHccC--hhhhHHHHHHHHHhcccCC
Q 015513 303 -----------DG-------RL-------KFREHA----------GAIAMVTKRLLRVS--PATNDRAVHILSSISKFSA 345 (405)
Q Consensus 303 -----------~~-------~~-------~i~~~~----------g~i~~Lv~~l~~~s--~~~~e~a~~~L~~L~~~~~ 345 (405)
+. +. .++... ..++.+++.+...+ ...++.+..++..++...+
T Consensus 561 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~ 640 (876)
T 1qgr_A 561 VLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG 640 (876)
T ss_dssp HHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHH
Confidence 00 00 011111 12334444221111 1456777777777775432
Q ss_pred CHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 346 TYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 346 ~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
.. ... .+. ..++.|+..++....+.+|..|..++..+.+.
T Consensus 641 ~~-~~~-~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 680 (876)
T 1qgr_A 641 GE-FLK-YME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRA 680 (876)
T ss_dssp GG-GGG-GHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred hh-HHH-HHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHH
Confidence 21 111 111 25677777887433678888888888776654
No 129
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.91 E-value=5.5e-05 Score=83.82 Aligned_cols=273 Identities=11% Similarity=0.081 Sum_probs=171.7
Q ss_pred HHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchh
Q 015513 93 DQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNE 170 (405)
Q Consensus 93 ~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~ 170 (405)
..+..++..+.+ .+.|..|+..|.+....+...-..-.....++.|+..|.+ .+...+..|+.+|..++..-.+
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d----~~~~vR~~A~~~L~~l~~~~~~ 81 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED----KNGEVQNLAVKCLGPLVSKVKE 81 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhCCH
Confidence 467888888855 4888889888877654321100000112456667777753 2345688899999888754322
Q ss_pred hHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccch-----hhhcccHHHHHHHHHHHhhcCChHH
Q 015513 171 NKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGL-----LESTLNLDFFKEMVKLLKENISQQA 245 (405)
Q Consensus 171 ~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~-----~i~~~~~g~i~~Lv~lL~~~~~~~~ 245 (405)
..+ . ..++.|+..|.+ .+..+|..|+.+|..++..-.... ... .-...++.|.+.+.+..++.+
T Consensus 82 --~~~--~--~i~~~Ll~~l~d----~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~ 150 (1230)
T 1u6g_C 82 --YQV--E--TIVDTLCTNMLS----DKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSV 150 (1230)
T ss_dssp --HHH--H--HHHHHHHHHTTC----SSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHH
T ss_pred --HHH--H--HHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHH
Confidence 111 1 167777777776 677889999999999876533220 001 124688999999984227899
Q ss_pred HHHHHHHHHHhccC-CchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHc
Q 015513 246 TKSGLHVLLQACPM-GGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLR 324 (405)
Q Consensus 246 ~~~a~~aL~~L~~~-~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~ 324 (405)
+..|+.+|..++.. ++.-... -...++.|+..|.+. +..+++.|+.+|..++..... .+. ...++.|++.+..
T Consensus 151 ~~~al~~l~~~~~~~~~~l~~~-~~~ll~~l~~~L~~~-~~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~~L~~ 224 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQLTSP-RLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSK 224 (1230)
T ss_dssp HHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGGGGCS-SHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHHHhcc
Confidence 99999999999852 1110001 134666777777664 668999999999999865332 222 2357888886654
Q ss_pred cC-hhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccC
Q 015513 325 VS-PATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWN 390 (405)
Q Consensus 325 ~s-~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~ 390 (405)
.. ...+..+..++..++...+.. ... . -...++.++..++ +.++.+|+.|...+..+.+..+
T Consensus 225 ~~~~~~r~~a~~~l~~l~~~~~~~-~~~-~-l~~l~~~ll~~l~-d~~~~vR~~a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 225 NDSMSTTRTYIQCIAAISRQAGHR-IGE-Y-LEKIIPLVVKFCN-VDDDELREYCIQAFESFVRRCP 287 (1230)
T ss_dssp TCSSCSCTTHHHHHHHHHHHSSGG-GTT-S-CTTHHHHHHHHHS-SCCTTTHHHHHHHHHHHHHCTT
T ss_pred CCchhHHHHHHHHHHHHHHHhHHH-HHH-H-HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHCh
Confidence 32 234556677777777654321 111 0 1346788888887 5578889999988887777543
No 130
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.88 E-value=0.00013 Score=63.76 Aligned_cols=210 Identities=12% Similarity=0.106 Sum_probs=140.7
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhc--chhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHH
Q 015513 64 NHTLRRLIQAWCTHNGIDRIPTPKSALNKDQVRKLVRDLD--SGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLF 141 (405)
Q Consensus 64 n~~l~~~I~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~l~--~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~l 141 (405)
-..++.-+..|.-+.-.+- ...+++.+.-|+..++ ++..+.+++..|..+.+.-+...+...-...++.++.+
T Consensus 9 ~~~lre~L~sWkiK~a~el-----a~~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~l 83 (265)
T 3b2a_A 9 KTELRELVLSWQILDAVSL-----ALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINA 83 (265)
T ss_dssp HHHHHHHHHTTCHHHHHHH-----HHHCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHH-----HHhchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 3456777777754432110 0012444555666664 45889999999999988743333333335678888988
Q ss_pred HHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchh
Q 015513 142 IITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLL 221 (405)
Q Consensus 142 L~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~ 221 (405)
+++.+. ..--.|+.+|..|-.+.+-....... .+..|..++.+ ++.-.++.|+..|..+. ..
T Consensus 84 lk~~dE----kval~A~r~L~~LLe~vpL~~~~y~K----l~~aL~dlik~----~~~il~~eaae~Lgklk------v~ 145 (265)
T 3b2a_A 84 LSQENE----KVTIKALRALGYLVKDVPMGSKTFLK----AAKTLVSLLES----PDDMMRIETIDVLSKLQ------PL 145 (265)
T ss_dssp CCSTTH----HHHHHHHHHHHHHHTTCCBCHHHHHH----HHHHHHHHTTS----CCHHHHHHHHHHHHHCC------BS
T ss_pred Hhccch----hHHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHHHhcC----CCchHHHHHHHHhCcCC------cc
Confidence 865432 23456777777665443322222221 56677788887 89999999999999981 11
Q ss_pred hhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcC
Q 015513 222 ESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSC 301 (405)
Q Consensus 222 i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~ 301 (405)
. ...+.+..|.+++.+. +..++.+|+++|.+++...+....+ .+++.-+-++|++. |+.+++.|+.+|..+...
T Consensus 146 ~--~~~~V~~~l~sLl~Sk-d~~vK~agl~~L~eia~~S~D~~i~--~~I~~eI~elL~~e-D~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 146 E--DSKLVRTYINELVVSP-DLYTKVAGFCLFLNMLNSSADSGHL--TLILDEIPSLLQND-NEFIVELALDVLEKALSF 219 (265)
T ss_dssp C--CCHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHGGGCSSCCCG--GGTTTTHHHHHTCS-CHHHHHHHHHHHHHHTTS
T ss_pred c--chHHHHHHHHHHHhCC-ChhHHHHHHHHHHHhhcccCCHHHH--HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcC
Confidence 1 2457788899999766 9999999999999999854332222 24556677888886 889999999999999875
Q ss_pred H
Q 015513 302 A 302 (405)
Q Consensus 302 ~ 302 (405)
+
T Consensus 220 p 220 (265)
T 3b2a_A 220 P 220 (265)
T ss_dssp C
T ss_pred c
Confidence 3
No 131
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.87 E-value=0.00063 Score=72.00 Aligned_cols=271 Identities=13% Similarity=0.061 Sum_probs=164.0
Q ss_pred HHHHHhcc--hhHHHHHHHHHHHHHHhhHHh---HHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCc---
Q 015513 97 KLVRDLDS--GHLRISTLKKMEALAMENERN---RKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPS--- 168 (405)
Q Consensus 97 ~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~---r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~--- 168 (405)
.++..+.+ +..+..+++.|..++..-... ... -...++.++..|.+. ..++..|+++|.+++..-
T Consensus 415 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l~~~-----~~v~~~a~~al~~l~~~~~~~ 487 (861)
T 2bpt_A 415 SILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGLQDH-----PKVATNCSWTIINLVEQLAEA 487 (861)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHHTSC-----HHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHhccC-----hHHHHHHHHHHHHHHHhcccc
Confidence 34444443 467778888888777642211 111 134567777777431 356788888888775321
Q ss_pred --hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhc------
Q 015513 169 --NENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKEN------ 240 (405)
Q Consensus 169 --~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~------ 240 (405)
+.....+ . ..++.|+..+.+. +.+..++..++.+|..+.........-. -...++.+++.+...
T Consensus 488 ~~~~l~~~~---~-~il~~L~~~l~~~--d~~~~vr~~a~~al~~l~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~~~ 559 (861)
T 2bpt_A 488 TPSPIYNFY---P-ALVDGLIGAANRI--DNEFNARASAFSALTTMVEYATDTVAET--SASISTFVMDKLGQTMSVDEN 559 (861)
T ss_dssp SSCGGGGGH---H-HHHHHHHHHHTCS--CCGGGHHHHHHHHHHHHHHHCCGGGHHH--HHHHHHHHHHHHHHHTTSCGG
T ss_pred cchhhHHHH---H-HHHHHHHHHHhCc--CcchHHHHHHHHHHHHHHHHcchhhHHH--HHHHHHHHHHHHHHHHhhhcc
Confidence 1111222 1 2677788888741 1336789999999999987654322111 235677777777531
Q ss_pred --------CChHHHHHHHHHHHHhccCCchh-HHHHhhcchHHHHHHhhcCCCC-CcHHHHHHHHHHHhcCHhh-HHHHH
Q 015513 241 --------ISQQATKSGLHVLLQACPMGGNR-VKITEANAVFELIELELTKPEK-STTELIFNLLAQLCSCADG-RLKFR 309 (405)
Q Consensus 241 --------~~~~~~~~a~~aL~~L~~~~~n~-~~~v~~g~v~~Lv~lL~~~~~~-~~~e~a~~~L~~L~~~~~~-~~~i~ 309 (405)
.....+..++.+|.+++..-... .... ...++.++.++... +. .+++.++.++..++..... ....+
T Consensus 560 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l 637 (861)
T 2bpt_A 560 QLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGKGFEKYL 637 (861)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 02346678889998888643221 1111 35778888888875 45 7899999999999854322 22222
Q ss_pred hcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccC-cHHHHHHHHHHHHHhhcc
Q 015513 310 EHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADC-EKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 310 ~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~-~~~~k~~A~~ll~~l~~~ 388 (405)
. ..+|.|++.+.......+..++.++..++...++. ....+ ...++.++..++... ....|+.|...+..+..+
T Consensus 638 ~--~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 638 E--TFSPYLLKALNQVDSPVSITAVGFIADISNSLEED-FRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp H--HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG-GHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh-ccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 2 36777777553334456777888888777654431 22211 346777778887542 367899998888777665
Q ss_pred c
Q 015513 389 W 389 (405)
Q Consensus 389 ~ 389 (405)
.
T Consensus 713 ~ 713 (861)
T 2bpt_A 713 I 713 (861)
T ss_dssp H
T ss_pred h
Confidence 4
No 132
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.87 E-value=0.0015 Score=66.97 Aligned_cols=181 Identities=15% Similarity=0.076 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHH
Q 015513 106 HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGA 185 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~ 185 (405)
..+.++++.|-.+...+... ..+....++++.+. +...+....-.+..++..+++.... ++..
T Consensus 49 ~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s~----~~~~Krl~Yl~~~~~~~~~~e~~~l-------~in~ 111 (618)
T 1w63_A 49 TYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIASQ----KFTDKRIGYLGAMLLLDERQDVHLL-------MTNC 111 (618)
T ss_dssp TTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHSS----SHHHHHHHHHHHHHHCCCCHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcCC----chHHHHHHHHHHHHHhCCCcHHHHH-------HHHH
Confidence 55566666554332222111 23444556666643 2334555556677776655431111 5777
Q ss_pred HHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHH
Q 015513 186 LMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVK 265 (405)
Q Consensus 186 Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~ 265 (405)
|.+-|.+ .++..+..|+++|.++...+ + ....++.+.++|++. ++.+|+.|+.++.++......
T Consensus 112 l~kDL~~----~n~~vr~lAL~~L~~i~~~~-----~---~~~l~~~l~~~L~~~-~~~VRk~A~~al~~l~~~~p~--- 175 (618)
T 1w63_A 112 IKNDLNH----STQFVQGLALCTLGCMGSSE-----M---CRDLAGEVEKLLKTS-NSYLRKKAALCAVHVIRKVPE--- 175 (618)
T ss_dssp HHHHHSC----SSSHHHHHHHHHHHHHCCHH-----H---HHHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHCGG---
T ss_pred HHHhcCC----CCHhHHHHHHHHHHhcCCHH-----H---HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHChH---
Confidence 8888887 88999999999999997431 2 246788899999987 899999999999999873321
Q ss_pred HHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHH
Q 015513 266 ITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLL 323 (405)
Q Consensus 266 ~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~ 323 (405)
+++ +.++.+.++|.+. +..++..|+.+|..++........... ..+|.|++.|.
T Consensus 176 ~v~-~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~ 229 (618)
T 1w63_A 176 LME-MFLPATKNLLNEK-NHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILK 229 (618)
T ss_dssp GGG-GGGGGTTTSTTCC-CHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHH
T ss_pred HHH-HHHHHHHHHhCCC-CHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHH
Confidence 222 6788888888774 778999999999999876433211112 35676776443
No 133
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.79 E-value=0.00098 Score=73.82 Aligned_cols=231 Identities=15% Similarity=0.117 Sum_probs=144.1
Q ss_pred HHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchh
Q 015513 93 DQVRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNE 170 (405)
Q Consensus 93 ~~i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~ 170 (405)
.-+..+++.+.+ ...|..|+..|..++...+. .. -...++.|...|.+. +...+..|..+|..++..-..
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~--~~~i~~~Ll~~l~d~----~~~vR~~a~~~L~~i~~~l~~ 119 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQ--VETIVDTLCTNMLSD----KEQLRDISSIGLKTVIGELPP 119 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HH--HHHHHHHHHHHTTCS----SSHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HH--HHHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHhCCC
Confidence 345567777754 47888899999888864322 11 123445555555432 234577777777776532111
Q ss_pred h------HHhhcccchhHHHHHHHHHh-hhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCCh
Q 015513 171 N------KALVDHHNQDLIGALMWVLQ-WENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQ 243 (405)
Q Consensus 171 ~------~~~i~~~g~~~i~~Lv~lL~-~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~ 243 (405)
. ..... . ..+|.|+..+. + .+...+..|+.+|..++........-. ....++.|+..|.+. ++
T Consensus 120 ~~~~~~~~~~~~-~--~llp~L~~~l~~~----~~~~~~~~al~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~-~~ 189 (1230)
T 1u6g_C 120 ASSGSALAANVC-K--KITGRLTSAIAKQ----EDVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCLLPQLTSP-RL 189 (1230)
T ss_dssp ----CCTHHHHH-H--HHHHHHHHHHSCC----SCHHHHHHHHHHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCS-SH
T ss_pred cccccchHHHHH-H--HHHHHHHHHHcCC----CchHHHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHcCC-cH
Confidence 0 00111 1 27888888887 4 678999999999999986432211111 246778888888876 78
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhc-ccchHHHHHHH
Q 015513 244 QATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREH-AGAIAMVTKRL 322 (405)
Q Consensus 244 ~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~-~g~i~~Lv~~l 322 (405)
.+++.|+.+|..++...+.. +. ...++.|+..|....+..++..++.+|..++..... .+..+ ...++.+++.+
T Consensus 190 ~vR~~a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l 264 (1230)
T 1u6g_C 190 AVRKRTIIALGHLVMSCGNI--VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFC 264 (1230)
T ss_dssp HHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHH--HH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHh
Confidence 99999999999999754332 22 347889999887753346677788888888753111 12111 24667777744
Q ss_pred HccChhhhHHHHHHHHHhcccCCC
Q 015513 323 LRVSPATNDRAVHILSSISKFSAT 346 (405)
Q Consensus 323 ~~~s~~~~e~a~~~L~~L~~~~~~ 346 (405)
....+..++.+..++..++...+.
T Consensus 265 ~d~~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 265 NVDDDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp SSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred cCCCHHHHHHHHHHHHHHHHHChH
Confidence 333456778888888888776543
No 134
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.77 E-value=0.00066 Score=66.16 Aligned_cols=270 Identities=10% Similarity=-0.008 Sum_probs=160.0
Q ss_pred HHHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhh-
Q 015513 95 VRKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNEN- 171 (405)
Q Consensus 95 i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~- 171 (405)
+..++..+.+ .+.|.+|-..|..+...+ ..+.+..|..+|.+.. .....+..|..+|.++.......
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~--~~~~vR~~a~~~Lk~~i~~~~~~~ 72 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPG--NSQVARVAAGLQIKNSLTSKDPDI 72 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTT--SCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCC--CChHHHHHHHHHHHHhccccchHH
Confidence 4455655533 477888888887765421 2456777888887532 22356788888888875332100
Q ss_pred ----H---Hhhcccchh-HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcC-C
Q 015513 172 ----K---ALVDHHNQD-LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENI-S 242 (405)
Q Consensus 172 ----~---~~i~~~g~~-~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~-~ 242 (405)
. ..+.+.... .-..|+..|.+ .+..+ ..++.+|..++..+.... .-.+.++.|+..+.++. +
T Consensus 73 ~~~~~~~~~~l~~~~~~~ik~~ll~~l~~----~~~~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~ 143 (462)
T 1ibr_B 73 KAQYQQRWLAIDANARREVKNYVLQTLGT----ETYRP-SSASQCVAGIACAEIPVN----QWPELIPQLVANVTNPNST 143 (462)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHTTC----CCSSS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCC
T ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHHhCC----CCchh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHhccCCCC
Confidence 0 111111001 23346677776 56667 888999999987643211 12478999999998753 6
Q ss_pred hHHHHHHHHHHHHhccCC--chhHHHHhhcchHHHHHHhhcCC-CCCcHHHHHHHHHHHhcCHhhHH--HHHhcccchHH
Q 015513 243 QQATKSGLHVLLQACPMG--GNRVKITEANAVFELIELELTKP-EKSTTELIFNLLAQLCSCADGRL--KFREHAGAIAM 317 (405)
Q Consensus 243 ~~~~~~a~~aL~~L~~~~--~n~~~~v~~g~v~~Lv~lL~~~~-~~~~~e~a~~~L~~L~~~~~~~~--~i~~~~g~i~~ 317 (405)
+..++.|+.+|..++..- +.-.... ..+++.++..+.+.. +..++..|+.+|.++...-+... .... .-.++.
T Consensus 144 ~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~~l~~~ 221 (462)
T 1ibr_B 144 EHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQV 221 (462)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHH
Confidence 789999999999998632 1111111 347788888887642 45788999999998764322110 0000 112444
Q ss_pred HHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 318 VTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 318 Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
+.+.+.......+..+..+|..++...+.. ....+..+.++.++..++ +..+.++..|...+..+.+.
T Consensus 222 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 222 VCEATQCPDTRVRVAALQNLVKIMSLYYQY--METYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCGGG--CTTTTTTTHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHH
Confidence 444222234466777888888877654321 111111156666666666 55788888888877666543
No 135
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.72 E-value=0.01 Score=50.08 Aligned_cols=214 Identities=14% Similarity=0.164 Sum_probs=136.6
Q ss_pred chHHHHHHHHHhcch--hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCc
Q 015513 91 NKDQVRKLVRDLDSG--HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPS 168 (405)
Q Consensus 91 ~~~~i~~lv~~l~~~--~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~ 168 (405)
+++-+..++..+.+. .+|.+|+..+-.++++-++-... .+.-|..+++.. ..+....+...++..++...
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ks---EaIpltqeIa~a~G~la~i~ 101 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKS---EAIPLTQEIAKAFGQMAKEK 101 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHC---CSHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhc---ccCchHHHHHHHHhHHHHhC
Confidence 455667788888765 68999999999988876554332 234455555432 22333344445666665433
Q ss_pred hhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHH
Q 015513 169 NENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKS 248 (405)
Q Consensus 169 ~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~ 248 (405)
++ .+. + .+|.+..-.+- +++..+.+-..+|..++.... ... .+.+.-+..+|.++ +..-+-.
T Consensus 102 Pe---~v~--~--vVp~lfanyri----gd~kikIn~~yaLeeIaranP--~l~----~~v~rdi~smltsk-d~~Dkl~ 163 (253)
T 2db0_A 102 PE---LVK--S--MIPVLFANYRI----GDEKTKINVSYALEEIAKANP--MLM----ASIVRDFMSMLSSK-NREDKLT 163 (253)
T ss_dssp HH---HHH--H--HHHHHHHHSCC----CSHHHHHHHHHHHHHHHHHCH--HHH----HHHHHHHHHHTSCS-SHHHHHH
T ss_pred HH---HHH--h--hHHHHHHHHhc----CCccceecHHHHHHHHHHhCh--HHH----HHHHHHHHHHhcCC-ChHHHHH
Confidence 32 221 2 56666555555 899999999999999986532 222 37788899999877 7666666
Q ss_pred HHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChh
Q 015513 249 GLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPA 328 (405)
Q Consensus 249 a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~ 328 (405)
|+..+..+. +|...-+. -.+|-|..+|.++ ++.++..|+.+|.+|+..+..-.+++. .. ++.+...|+.
T Consensus 164 aLnFi~alG---en~~~yv~-PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~-----~k-l~e~~D~S~l 232 (253)
T 2db0_A 164 ALNFIEAMG---ENSFKYVN-PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI-----KR-LEELNDTSSL 232 (253)
T ss_dssp HHHHHHTCC---TTTHHHHG-GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH-----HH-HHHCCCSCHH
T ss_pred HHHHHHHHh---ccCccccC-cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH-----HH-HHHhcCcHHH
Confidence 666555554 56666554 4789999999986 888999999999999976543333222 11 2223334555
Q ss_pred hhHHHHHHHHHhc
Q 015513 329 TNDRAVHILSSIS 341 (405)
Q Consensus 329 ~~e~a~~~L~~L~ 341 (405)
.+......|..|.
T Consensus 233 v~~~V~egL~rl~ 245 (253)
T 2db0_A 233 VNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 136
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.69 E-value=0.00038 Score=62.23 Aligned_cols=180 Identities=13% Similarity=0.085 Sum_probs=122.7
Q ss_pred HHHHhcc--hhHHHHHHHHHHHHHHhhHHhH-HHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHh
Q 015513 98 LVRDLDS--GHLRISTLKKMEALAMENERNR-KSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKAL 174 (405)
Q Consensus 98 lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r-~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~ 174 (405)
+.+.+.+ ...|..|+..|..+....+... ..+ ...++.|...|.. +.+..++..|+.+|..|+.. ....
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~k---d~~~~V~~~a~~~l~~la~~---l~~~ 91 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITK---DSNVVLVAMAGKCLALLAKG---LAKR 91 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHH---HGGG
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHH---Hhhh
Confidence 4455543 4889999999998887633211 011 2446666676631 22345688899999888732 1121
Q ss_pred hcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 015513 175 VDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLL 254 (405)
Q Consensus 175 i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~ 254 (405)
+...-...+|.++..+.. .+..++..|..+|..+..... . ...++.|...|++. ++.++..++..|.
T Consensus 92 ~~~~~~~ilp~ll~~l~d----~~~~vr~~a~~aL~~~~~~~~-----~---~~ll~~l~~~l~~~-~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKE----KKPNVVTALREAIDAIYASTS-----L---EAQQESIVESLSNK-NPSVKSETALFIA 158 (242)
T ss_dssp GHHHHHHHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTSC-----H---HHHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHcCC-----H---HHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence 111100267888888886 788999999999999976431 1 25788889999887 8999999999999
Q ss_pred Hhcc-CCch--hHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc
Q 015513 255 QACP-MGGN--RVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS 300 (405)
Q Consensus 255 ~L~~-~~~n--~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~ 300 (405)
.+.. .... -.... ...+|.|+.+|.+. +..++..|..+|..++.
T Consensus 159 ~~l~~~~~~~~~~~~l-~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 159 RALTRTQPTALNKKLL-KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHTTCCGGGCCHHHH-HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 9544 3221 11222 35899999999774 77899999999999874
No 137
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.66 E-value=9.4e-05 Score=59.61 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=82.8
Q ss_pred hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHH
Q 015513 132 AFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKM 211 (405)
Q Consensus 132 ~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~ 211 (405)
...++.++.+|.+.+. ..+..|+++|..+. .. .++.|+.+|.+ .++.+|..|+++|.+
T Consensus 11 ~~~~~~l~~~L~~~~~----~vR~~A~~~L~~~~------------~~--~~~~L~~~L~d----~~~~vR~~A~~aL~~ 68 (131)
T 1te4_A 11 SSGLVPRGSHMADENK----WVRRDVSTALSRMG------------DE--AFEPLLESLSN----EDWRIRGAAAWIIGN 68 (131)
T ss_dssp ----------CCSSCC----CSSSSCCSSTTSCS------------ST--THHHHHHGGGC----SCHHHHHHHHHHHGG
T ss_pred cccHHHHHHHhcCCCH----HHHHHHHHHHHHhC------------ch--HHHHHHHHHcC----CCHHHHHHHHHHHHh
Confidence 3556677777765432 22555555554332 11 46888899987 899999999999887
Q ss_pred HHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHH
Q 015513 212 VLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELI 291 (405)
Q Consensus 212 L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a 291 (405)
+. ...+++.|+++|+++ ++.++..|+++|..+. +..+++.|++++.+. +..++..|
T Consensus 69 ~~------------~~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~-~~~vr~~A 124 (131)
T 1te4_A 69 FQ------------DERAVEPLIKLLEDD-SGFVRSGAARSLEQIG----------GERVRAAMEKLAETG-TGFARKVA 124 (131)
T ss_dssp GC------------SHHHHHHHHHHHHHC-CTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSC-CTHHHHHH
T ss_pred cC------------CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCC-CHHHHHHH
Confidence 63 236789999999987 8999999999999886 245789999999874 77888888
Q ss_pred HHHHHH
Q 015513 292 FNLLAQ 297 (405)
Q Consensus 292 ~~~L~~ 297 (405)
+.+|..
T Consensus 125 ~~aL~~ 130 (131)
T 1te4_A 125 VNYLET 130 (131)
T ss_dssp HHHGGG
T ss_pred HHHHHh
Confidence 888754
No 138
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.66 E-value=4.3e-05 Score=54.86 Aligned_cols=47 Identities=19% Similarity=0.450 Sum_probs=38.0
Q ss_pred ccCcCCcccCCCcccc-CCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTA-ITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
-.|+||.+++..=..- .|||.|=..||.+|++..+..+||.|+....
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 5899999988743322 6999999999999997643478999998764
No 139
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.64 E-value=6e-06 Score=66.83 Aligned_cols=117 Identities=14% Similarity=-0.009 Sum_probs=81.1
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
.++.++.+|.+ .+...|..|++.|..+. .. .++.|+++|+++ ++.++..|+++|.++..
T Consensus 13 ~~~~l~~~L~~----~~~~vR~~A~~~L~~~~------------~~-~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--- 71 (131)
T 1te4_A 13 GLVPRGSHMAD----ENKWVRRDVSTALSRMG------------DE-AFEPLLESLSNE-DWRIRGAAAWIIGNFQD--- 71 (131)
T ss_dssp --------CCS----SCCCSSSSCCSSTTSCS------------ST-THHHHHHGGGCS-CHHHHHHHHHHHGGGCS---
T ss_pred cHHHHHHHhcC----CCHHHHHHHHHHHHHhC------------ch-HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC---
Confidence 57778888887 78888888888876542 11 258899999987 89999999999988763
Q ss_pred hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHH
Q 015513 262 NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILS 338 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~ 338 (405)
..+++.|+++|.+. +..++..|+.+|..+.. ..+++.|++.+...+...+..|..+|.
T Consensus 72 -------~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 -------ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp -------HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34689999999885 88899999999998841 236788888543333455555555543
No 140
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.58 E-value=0.0023 Score=59.29 Aligned_cols=186 Identities=10% Similarity=0.006 Sum_probs=129.9
Q ss_pred HHHHHHHhhhcCCCcHHhHHHHHHHHHH-HHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCch
Q 015513 184 GALMWVLQWENNDRHVAVKTSAMIVLKM-VLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGN 262 (405)
Q Consensus 184 ~~Lv~lL~~~~~~~~~~~~~~A~~~L~~-L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n 262 (405)
..++.-|.+ ++.+.+..+..-|.. ++.+.+.....+ ..+|+..|+++..++ +......+++||.+|-.+...
T Consensus 121 ~~iiekL~~----~~~~~lr~aLfsLk~~~q~D~~Fa~EFI--~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~G 193 (339)
T 3dad_A 121 NAILEKLYS----SSGPELRRSLFSLKQIFQEDKDLVPEFV--HSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDG 193 (339)
T ss_dssp HHHHHHHHH----CCHHHHHHHHHHHHHHHHTCTTHHHHHH--HTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHhc----CCcHHHHHHHHHHHHHhhcchHHHHHHH--HhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhcccc
Confidence 345566666 677778888888887 554555555554 568899999999988 889999999999999988777
Q ss_pred hHHHH-hhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHh-hHHHHHhcc------cc---hHHHHHHHH---ccChh
Q 015513 263 RVKIT-EANAVFELIELELTKPEKSTTELIFNLLAQLCSCAD-GRLKFREHA------GA---IAMVTKRLL---RVSPA 328 (405)
Q Consensus 263 ~~~~v-~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~-~~~~i~~~~------g~---i~~Lv~~l~---~~s~~ 328 (405)
-..++ ....|.-+..++.+. +..+...|+.+|..++...+ +...+.... .+ ...|++.|- .....
T Consensus 194 m~gvvs~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~e 272 (339)
T 3dad_A 194 MLGVVAHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPE 272 (339)
T ss_dssp HHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHH
T ss_pred ccchhCCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHH
Confidence 76666 456888888888863 77889999999999997655 333322211 12 668888554 23346
Q ss_pred hhHHHHHHHHHhcccCCCHHHHHHH----HhcChHHHHHHHHhccC-cHHHHHH
Q 015513 329 TNDRAVHILSSISKFSATYEVVLEM----LSVGAVSKLCMVTQADC-EKYLKDR 377 (405)
Q Consensus 329 ~~e~a~~~L~~L~~~~~~~~~~~~~----~~~G~v~~Ll~ll~~~~-~~~~k~~ 377 (405)
.+.+|...+..+-...++++.+..+ -+.|.-..+...|.+.+ .+..+++
T Consensus 273 lq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 273 LLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 6778888888877776655434443 34565556666676653 4455544
No 141
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00064 Score=61.30 Aligned_cols=195 Identities=12% Similarity=0.095 Sum_probs=128.7
Q ss_pred HHHHHhhhcCCCcHHhHHHHHHHHHH-HHhhhccchh--hhcccHHHHHHHHHHH-hhcCChHHHHHHHHHHHHhccCCc
Q 015513 186 LMWVLQWENNDRHVAVKTSAMIVLKM-VLELASKGLL--ESTLNLDFFKEMVKLL-KENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 186 Lv~lL~~~~~~~~~~~~~~A~~~L~~-L~~~~~~~~~--i~~~~~g~i~~Lv~lL-~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
+...+.+ .+...|..|...|.. +.... .+.. .. .-...+..|.+.+ ++. +..++..|+.+|..|+..-.
T Consensus 21 f~~~l~s----~~w~eRk~al~~L~~~~~~~~-~~i~~~~~-~~~~~~~~L~~~l~~D~-n~~v~~~A~~al~~la~~l~ 93 (249)
T 2qk1_A 21 FQERITS----SKWKDRVEALEEFWDSVLSQT-KKLKSTSQ-NYSNLLGIYGHIIQKDA-NIQAVALAAQSVELICDKLK 93 (249)
T ss_dssp HHHHHTC----SSHHHHHHHHHHHHHHTGGGC-CCBCCTTC-CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhc----CCHHHHHHHHHHHHHHHHhcC-CccccCcc-cHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhcc
Confidence 4455676 789999999999988 86432 1211 12 1246788899999 555 88999999999999996221
Q ss_pred --hhH-HHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHh-cccchHHHHHHHHccChhhhHHHHHHH
Q 015513 262 --NRV-KITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFRE-HAGAIAMVTKRLLRVSPATNDRAVHIL 337 (405)
Q Consensus 262 --n~~-~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~-~~g~i~~Lv~~l~~~s~~~~e~a~~~L 337 (405)
.-. ... .-++|++++.+.+. ...+++.+..+|..++...+- ..... -...++.|+..|.......++.++..|
T Consensus 94 ~~~f~~~y~-~~llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l 170 (249)
T 2qk1_A 94 TPGFSKDYV-SLVFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLF 170 (249)
T ss_dssp TTTSCHHHH-HHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred cccccHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 111 222 23789999999874 567889999999888753211 00000 011344555533333567788888888
Q ss_pred HHhcccCCCH-HHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccCC
Q 015513 338 SSISKFSATY-EVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWNN 391 (405)
Q Consensus 338 ~~L~~~~~~~-~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~~ 391 (405)
..+....+.. ......+....++.|..++. +..+.+|+.|...+..+.+..++
T Consensus 171 ~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~-D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 171 NASMKEEKDGYSTLQRYLKDEVVPIVIQIVN-DTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhCH
Confidence 8888765531 11222232367888888986 77899999999999988776654
No 142
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.47 E-value=0.0023 Score=59.27 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=114.2
Q ss_pred HHHHHHHHhc--chhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhh
Q 015513 94 QVRKLVRDLD--SGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNEN 171 (405)
Q Consensus 94 ~i~~lv~~l~--~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~ 171 (405)
.+..++..+. +......++..|+.+-.++...-..+++.||+..|+++.... + ...+..++.+|.+|..+.+..
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~--~--gN~q~Y~L~AL~~LM~~v~Gm 194 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA--D--HNYQSYILRALGQLMLFVDGM 194 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS--C--HHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc--C--hHHHHHHHHHHHHHHhccccc
Confidence 4566777773 358889999999985556777788999999999999999654 2 244899999999999887665
Q ss_pred HHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhccc-HH---------HHHHHHHHHhh--
Q 015513 172 KALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLN-LD---------FFKEMVKLLKE-- 239 (405)
Q Consensus 172 ~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~-~g---------~i~~Lv~lL~~-- 239 (405)
..++.... .|..+..++.+ .+..+...|..+|..+....+....++ .+ .. -+..|+.+|.+
T Consensus 195 ~gvvs~~~--fI~~lyslv~s----~~~~V~k~AL~LL~v~V~~se~~~~lv-~~av~~v~~~~~~~p~~~Lv~~L~~~~ 267 (339)
T 3dad_A 195 LGVVAHSD--TIQWLYTLCAS----LSRLVVKTALKLLLVFVEYSENNAPLF-IRAVNSVASTTGAPPWANLVSILEEKN 267 (339)
T ss_dssp HHHHHCHH--HHHHHHHGGGC----SCHHHHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHCCCTTHHHHHHHTTTT
T ss_pred cchhCCHH--HHHHHHHHHcC----ccHHHHHHHHHHHHHHHccCcccchHH-HHHHHHhhhccCCCcHHHHHHHHhccC
Confidence 55555443 88888888887 788999999999999987765444333 11 11 15589999972
Q ss_pred cCChHHHHHHHHHHHHhcc
Q 015513 240 NISQQATKSGLHVLLQACP 258 (405)
Q Consensus 240 ~~~~~~~~~a~~aL~~L~~ 258 (405)
+.+.+.+..|...|-.+-.
T Consensus 268 ~~D~elq~~amtLIN~lL~ 286 (339)
T 3dad_A 268 GADPELLVYTVTLINKTLA 286 (339)
T ss_dssp SCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 2378888888877665543
No 143
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.46 E-value=0.00011 Score=50.46 Aligned_cols=49 Identities=16% Similarity=0.356 Sum_probs=40.1
Q ss_pred CcccCcCCcccCCCccccCCCC-----cccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKDPVTAITGI-----SYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~~~g~-----~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
+.-.|.||++-..+|.+.||.+ -|=+.|+.+|+...++.+||+|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4457999998888898888653 688999999997544678999998874
No 144
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.0013 Score=59.28 Aligned_cols=184 Identities=14% Similarity=0.117 Sum_probs=121.0
Q ss_pred chhHHHHHHHHHh-cCCCchhhHHhh---cccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhc-cchh-hhc
Q 015513 151 TTGLEEALRILSL-VWSPSNENKALV---DHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELAS-KGLL-EST 224 (405)
Q Consensus 151 ~~~~e~A~~~L~~-L~~~~~~~~~~i---~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~-~~~~-i~~ 224 (405)
-..+.+|+..|.. +..+. .++. .+.+ ..+..|...+.. +.+..++..|+.+|..|+..-. .... -.
T Consensus 30 w~eRk~al~~L~~~~~~~~---~~i~~~~~~~~-~~~~~L~~~l~~---D~n~~v~~~A~~al~~la~~l~~~~f~~~y- 101 (249)
T 2qk1_A 30 WKDRVEALEEFWDSVLSQT---KKLKSTSQNYS-NLLGIYGHIIQK---DANIQAVALAAQSVELICDKLKTPGFSKDY- 101 (249)
T ss_dssp HHHHHHHHHHHHHHTGGGC---CCBCCTTCCCH-HHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHHCTTTSCHHH-
T ss_pred HHHHHHHHHHHHHHHHhcC---CccccCcccHH-HHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHhcccccccHHH-
Confidence 3457788888877 65322 2333 1222 367778888843 2788899999999999996543 2221 11
Q ss_pred ccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCC-chhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHh
Q 015513 225 LNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMG-GNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCAD 303 (405)
Q Consensus 225 ~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~-~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~ 303 (405)
..-.++.+++.+++. .+.+++++..+|.+++.+- +....-.=..+++.|+..|.+. ...+++.++.+|..++....
T Consensus 102 -~~~llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 102 -VSLVFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp -HHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcC
Confidence 135788999999887 7889999999999888632 2111000013667788888765 66889999999999885322
Q ss_pred hH-HHHHh-c-ccchHHHHHHHHccChhhhHHHHHHHHHhcccCC
Q 015513 304 GR-LKFRE-H-AGAIAMVTKRLLRVSPATNDRAVHILSSISKFSA 345 (405)
Q Consensus 304 ~~-~~i~~-~-~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~ 345 (405)
.. ..+.. - ...+|.|.+.+.......++.|..++..++..-+
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 10 22111 1 3478888886655566889999999998886544
No 145
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.41 E-value=0.00011 Score=54.92 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=38.0
Q ss_pred cCcCCcccCCCcc-ccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 11 ICPISLQIMKDPV-TAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 11 ~Cpi~~~~m~dPv-~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
.|++|.-.+..=. ++||+|.||..|+..|..++ ..+||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~-~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG-DKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT-CCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhcc-CCCCcCcCCeee
Confidence 5888988777744 78999999999999998764 679999998865
No 146
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.03 E-value=0.073 Score=56.81 Aligned_cols=266 Identities=10% Similarity=0.058 Sum_probs=155.7
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhHHhH-HHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhH
Q 015513 94 QVRKLVRDLDSGHLRISTLKKMEALAMENERNR-KSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENK 172 (405)
Q Consensus 94 ~i~~lv~~l~~~~~~~~Al~~L~~l~~~~~~~r-~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~ 172 (405)
-+..+.+.+.+...-..|+..+..++....... ....-.+.++.+...+. +-...+++.|-.++..+...-+ .
T Consensus 55 ~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~----dk~~~v~~aa~~~~~~~~~~~~--~ 128 (986)
T 2iw3_A 55 FFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAG----NKDKEIQSVASETLISIVNAVN--P 128 (986)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTT----CSSHHHHHHHHHHHHHHHHHSC--G
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhc----CCchHHHHHHHHHHHHHHHhCC--H
Confidence 334444444443222777788888875432211 01111134444444443 2223446655555544432111 1
Q ss_pred HhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHH
Q 015513 173 ALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHV 252 (405)
Q Consensus 173 ~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a 252 (405)
..+ .. .+|.|+..|.+ ++....+..|..+|..|+... ...+...-...||.+-+.+-+- .++++++|..+
T Consensus 129 ~a~--~~--~~~~~~~~~~~---~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~ 198 (986)
T 2iw3_A 129 VAI--KA--LLPHLTNAIVE---TNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDT-KKEVKAAATAA 198 (986)
T ss_dssp GGH--HH--HHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred HHH--HH--HHHHHHHHhcc---ccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccC-cHHHHHHHHHH
Confidence 122 22 78999998876 256889999999999998754 2333301234556655555554 78999999999
Q ss_pred HHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHh-hHHHHHhcccchHHHHHHHHccChhhhH
Q 015513 253 LLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCAD-GRLKFREHAGAIAMVTKRLLRVSPATND 331 (405)
Q Consensus 253 L~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~~l~~~s~~~~e 331 (405)
+..+|..-+|+.. ...||.||+.+... + + ...++..|+.-.--.+ .-..+ +-.+|.|.+-|...+...+.
T Consensus 199 ~~~~~~~~~n~d~---~~~~~~~~~~~~~p-~-~-~~~~~~~l~~~tfv~~v~~~~l---~~~~p~l~r~l~~~~~~~~r 269 (986)
T 2iw3_A 199 MTKATETVDNKDI---ERFIPSLIQCIADP-T-E-VPETVHLLGATTFVAEVTPATL---SIMVPLLSRGLNERETGIKR 269 (986)
T ss_dssp HHHHGGGCCCTTT---GGGHHHHHHHHHCT-T-H-HHHHHHHHTTCCCCSCCCHHHH---HHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHhcCCCcch---hhhHHHHHHHhcCh-h-h-hHHHHHHhhcCeeEeeecchhH---HHHHHHHHhhhccCcchhhe
Confidence 9999997777765 46889999999763 2 2 3344444433211111 11111 11345555545444556677
Q ss_pred HHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHH----hccCcHHHHHHHHHHHHHhhccc
Q 015513 332 RAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVT----QADCEKYLKDRAKEILRLHSNVW 389 (405)
Q Consensus 332 ~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll----~~~~~~~~k~~A~~ll~~l~~~~ 389 (405)
.++-++.+||+.-.++..... .+|+|+.-+ ..-..|++|+.|...+.-|.++-
T Consensus 270 ~~~~~~~n~~~lv~~~~~~~~-----f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 270 KSAVIIDNMCKLVEDPQVIAP-----FLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp HHHHHHHHHHTTCCCHHHHHH-----HHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEcchhhhcCCHHHHhh-----hhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhh
Confidence 788899999998777644433 445555444 43458999999999999887764
No 147
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.03 E-value=0.097 Score=53.45 Aligned_cols=207 Identities=11% Similarity=0.048 Sum_probs=122.0
Q ss_pred chhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHH----hhcc---C------CCchhHHHHHHHHHhcCCC-ch
Q 015513 104 SGHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFII----TSYK---G------NKTTGLEEALRILSLVWSP-SN 169 (405)
Q Consensus 104 ~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~----~~~~---~------~~~~~~e~A~~~L~~L~~~-~~ 169 (405)
++.++..|+..|..++..++.. + ...++.++..|. .... + .+...+-..+.+|..++.. ++
T Consensus 200 d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~ 274 (621)
T 2vgl_A 200 HLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDP 274 (621)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSH
T ss_pred CccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCH
Confidence 3577888888888888766542 1 134455554443 2110 0 0234577777888888753 33
Q ss_pred hhHHhhcccchhHHHHHHHHH---------hhhcCCCc--HHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHh
Q 015513 170 ENKALVDHHNQDLIGALMWVL---------QWENNDRH--VAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLK 238 (405)
Q Consensus 170 ~~~~~i~~~g~~~i~~Lv~lL---------~~~~~~~~--~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~ 238 (405)
+.++.+.+ .++.++..+ ++ .+ ..+...|+.++..+.... ... ..++..|..+|.
T Consensus 275 ~~~~~l~~----~L~~il~~~~~~~ks~~l~~----~n~~~aVl~ea~~~i~~l~~~~----~~~---~~~~~~L~~~L~ 339 (621)
T 2vgl_A 275 AVRGRLTE----CLETILNKAQEPPKSKKVQH----SNAKNAVLFEAISLIIHHDSEP----NLL---VRACNQLGQFLQ 339 (621)
T ss_dssp HHHHHHHH----HHHHHHHHHHSCCSCSSHHH----HHHHHHHHHHHHHHHHHHCCCH----HHH---HHHHHHHHHHSS
T ss_pred HHHHHHHH----HHHHHHHhhccCcccccccc----cchHHHHHHHHHHHHHhcCCcH----HHH---HHHHHHHHHHhc
Confidence 33332221 344444322 11 12 266677788888774211 122 367888999998
Q ss_pred hcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhh-cCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHH
Q 015513 239 ENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELEL-TKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAM 317 (405)
Q Consensus 239 ~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~-~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~ 317 (405)
+. ++..+-.|+.+|..++....... ++ ....+.++..|. +. |..++..++.+|..|+. .+|-..++. .
T Consensus 340 ~~-~~niry~aL~~l~~l~~~~~~~~-~~-~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~-~~Nv~~Iv~------e 408 (621)
T 2vgl_A 340 HR-ETNLRYLALESMCTLASSEFSHE-AV-KTHIETVINALKTER-DVSVRQRAVDLLYAMCD-RSNAQQIVA------E 408 (621)
T ss_dssp CS-CHHHHHHHHHHHHHHTTCTTTHH-HH-HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC-HHHHHHHHH------H
T ss_pred CC-CcchHHHHHHHHHHHHhccCcHH-HH-HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC-hhhHHHHHH------H
Confidence 76 88999999999999998654322 23 346777888888 64 78899999999999974 344443332 2
Q ss_pred HHHHHHccChhhhHHHHHHHHHhc
Q 015513 318 VTKRLLRVSPATNDRAVHILSSIS 341 (405)
Q Consensus 318 Lv~~l~~~s~~~~e~a~~~L~~L~ 341 (405)
|.+.+...+...+..++..+..++
T Consensus 409 L~~yl~~~d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 409 MLSYLETADYSIREEIVLKVAILA 432 (621)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHH
Confidence 333333333344444454444444
No 148
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.91 E-value=0.057 Score=57.63 Aligned_cols=260 Identities=12% Similarity=0.053 Sum_probs=161.6
Q ss_pred HHHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchh---
Q 015513 96 RKLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNE--- 170 (405)
Q Consensus 96 ~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~--- 170 (405)
..+++.++. ...+..|...|..+...+... .....+.+..|.+.+.... . -|.|+.++..|+.....
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~----~--~~~a~~~~~~~~~~~~~~~~ 88 (986)
T 2iw3_A 17 EELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKK----T--AANAMQAVAHIANQSNLSPS 88 (986)
T ss_dssp HHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHH----H--HHHHHHHHHHHTCTTTCCTT
T ss_pred HHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccC----C--HHHHHHHHHHHHHhcCCCCC
Confidence 334444432 355566666676665432111 1122367777777776431 1 28888888888754321
Q ss_pred hHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHH
Q 015513 171 NKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGL 250 (405)
Q Consensus 171 ~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 250 (405)
....+. + .++.+...... ....++..|..++..+...-.... . ..++|.|++.|++...+..+..|+
T Consensus 89 ~e~~~~--~--~~~~~~~~~~d----k~~~v~~aa~~~~~~~~~~~~~~a----~-~~~~~~~~~~~~~~~kw~~k~~~l 155 (986)
T 2iw3_A 89 VEPYIV--Q--LVPAICTNAGN----KDKEIQSVASETLISIVNAVNPVA----I-KALLPHLTNAIVETNKWQEKIAIL 155 (986)
T ss_dssp THHHHH--T--THHHHHHHTTC----SSHHHHHHHHHHHHHHHHHSCGGG----H-HHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccchH--H--HHHHHHHHhcC----CchHHHHHHHHHHHHHHHhCCHHH----H-HHHHHHHHHHhccccchHHHHHHH
Confidence 112222 2 45555555554 667888888878777765432211 1 367999999998765799999999
Q ss_pred HHHHHhccCCchhHHHHh--hcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChh
Q 015513 251 HVLLQACPMGGNRVKITE--ANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPA 328 (405)
Q Consensus 251 ~aL~~L~~~~~n~~~~v~--~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~ 328 (405)
.+|..|+... ..++.. ...||.+-+.+.+. ..+++..|..++..+|..-+|+.- ...||.||+.|.+. .
T Consensus 156 ~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~----~~~~~~~~~~~~~p--~ 226 (986)
T 2iw3_A 156 AAFSAMVDAA--KDQVALRMPELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI----ERFIPSLIQCIADP--T 226 (986)
T ss_dssp HHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT----GGGHHHHHHHHHCT--T
T ss_pred HHHHHHHHHh--HHHHHHhccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch----hhhHHHHHHHhcCh--h
Confidence 9999999743 233332 46788888877764 668999999999999987666553 35899999977654 3
Q ss_pred hhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccC
Q 015513 329 TNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWN 390 (405)
Q Consensus 329 ~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~ 390 (405)
....++..|.+..-...-. .-.. +=.+|.|..-|. ..+..+|++++-++.+|.+-..
T Consensus 227 ~~~~~~~~l~~~tfv~~v~-~~~l---~~~~p~l~r~l~-~~~~~~~r~~~~~~~n~~~lv~ 283 (986)
T 2iw3_A 227 EVPETVHLLGATTFVAEVT-PATL---SIMVPLLSRGLN-ERETGIKRKSAVIIDNMCKLVE 283 (986)
T ss_dssp HHHHHHHHHTTCCCCSCCC-HHHH---HHHHHHHHHHHT-SSSHHHHHHHHHHHHHHHTTCC
T ss_pred hhHHHHHHhhcCeeEeeec-chhH---HHHHHHHHhhhc-cCcchhheeeEEEEcchhhhcC
Confidence 3444555555543332211 0000 112455556665 4578889999999999988543
No 149
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.80 E-value=0.12 Score=50.17 Aligned_cols=226 Identities=12% Similarity=0.140 Sum_probs=135.5
Q ss_pred HHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhc-------------CCCcHHhHHHHHHHHHHHHhhhccch
Q 015513 154 LEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWEN-------------NDRHVAVKTSAMIVLKMVLELASKGL 220 (405)
Q Consensus 154 ~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~-------------~~~~~~~~~~A~~~L~~L~~~~~~~~ 220 (405)
+.-++.+|..|...+ +.|..+.+.++..++.++.+++... ++...+.+.+++.+++-|+-.++...
T Consensus 185 ~~i~v~~L~~Ll~~~-~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~ 263 (480)
T 1ho8_A 185 CYVCIRLLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFAN 263 (480)
T ss_dssp HHHHHHHHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHhcch-hHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHH
Confidence 445667777776554 6788776654235788876665321 11145668999999999987766444
Q ss_pred hhhcccHHH--HHHHHHHHhhcCChHHHHHHHHHHHHhccCC-chh----HHHHhhcchHHHHHHhhcCC--CCCcHHHH
Q 015513 221 LESTLNLDF--FKEMVKLLKENISQQATKSGLHVLLQACPMG-GNR----VKITEANAVFELIELELTKP--EKSTTELI 291 (405)
Q Consensus 221 ~i~~~~~g~--i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~-~n~----~~~v~~g~v~~Lv~lL~~~~--~~~~~e~a 291 (405)
.+. ..+. +..|+++++.....++.+.++.+|+||.... ++. ..++-.|-++++++.|.... |+++.+..
T Consensus 264 ~l~--~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl 341 (480)
T 1ho8_A 264 ELV--QKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDI 341 (480)
T ss_dssp HHH--TTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHH
T ss_pred HHH--hcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHH
Confidence 443 3343 3678888988767899999999999998854 222 22332233366778887642 55555554
Q ss_pred HHHHHHHhc-------CHhhHH------------------------HHHhcc-cchHHHHHHHHcc--------Ch--hh
Q 015513 292 FNLLAQLCS-------CADGRL------------------------KFREHA-GAIAMVTKRLLRV--------SP--AT 329 (405)
Q Consensus 292 ~~~L~~L~~-------~~~~~~------------------------~i~~~~-g~i~~Lv~~l~~~--------s~--~~ 329 (405)
-.....|-. ..+... ++-+.. ..+..|+++|... +. ..
T Consensus 342 ~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~ 421 (480)
T 1ho8_A 342 SNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKII 421 (480)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcce
Confidence 443333321 111111 221111 2345666644321 11 12
Q ss_pred hHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 015513 330 NDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLH 385 (405)
Q Consensus 330 ~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l 385 (405)
...|..=+..++++.++ .+..+-+.|+=..++.+|. +.++.+|..|-..++.+
T Consensus 422 laVAc~Digefvr~~P~--gr~i~~~lg~K~~VM~Lm~-h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 422 IQVALNDITHVVELLPE--SIDVLDKTGGKADIMELLN-HSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHCTT--HHHHHHHHSHHHHHHHHTS-CSSHHHHHHHHHHHHHH
T ss_pred EEeecccHHHHHHHCcc--hhHHHHHcCcHHHHHHHhc-CCCHHHHHHHHHHHHHH
Confidence 23333445556776665 4666668899888888987 56889999888777643
No 150
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.61 E-value=0.00079 Score=51.56 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=29.5
Q ss_pred CcccCcCCcc-cCCCccc--cCCCCcccHHHHHHHHh
Q 015513 8 QYFICPISLQ-IMKDPVT--AITGISYDRESIEKWLK 41 (405)
Q Consensus 8 ~~~~Cpi~~~-~m~dPv~--~~~g~~~~r~~I~~~~~ 41 (405)
+++.|+||.+ .+++||. +.|||+||+.|++.++.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4689999996 5899998 89999999999999543
No 151
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.60 E-value=0.26 Score=50.26 Aligned_cols=143 Identities=13% Similarity=0.108 Sum_probs=83.7
Q ss_pred HHHHHhcc--hhHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHh
Q 015513 97 KLVRDLDS--GHLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKAL 174 (405)
Q Consensus 97 ~lv~~l~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~ 174 (405)
.+.+.+.+ +-.+.-|++.|..+.. ++ +. ...++.+.++|.+. +.++-++..|+-++..+...++ +.
T Consensus 115 ~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~-~~l~~~v~~~l~~~--d~~~~VRK~A~~al~kl~~~~p---~~ 182 (621)
T 2vgl_A 115 AIKNDLASRNPTFMGLALHCIANVGS--RE----MA-EAFAGEIPKILVAG--DTMDSVKQSAALCLLRLYRTSP---DL 182 (621)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HH-HHHTTHHHHHHHCS--SSCHHHHHHHHHHHHHHHHHCG---GG
T ss_pred HHHHhcCCCCHHHHHHHHHHhhccCC--HH----HH-HHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHhCh---hh
Confidence 34445544 3556677777777642 22 22 24566677777332 2234568888888887765333 33
Q ss_pred hcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhc-C-----------C
Q 015513 175 VDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKEN-I-----------S 242 (405)
Q Consensus 175 i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~-~-----------~ 242 (405)
+...+ .++.+..+|.. .++.++..|+.+|..++..+....... ....+..|-+++..+ . +
T Consensus 183 ~~~~~--~~~~l~~lL~d----~d~~V~~~a~~~l~~i~~~~~~~~~~~--~~~~~~~L~~ll~~~~~~~~~~~~~~~~~ 254 (621)
T 2vgl_A 183 VPMGD--WTSRVVHLLND----QHLGVVTAATSLITTLAQKNPEEFKTS--VSLAVSRLSRIVTSASTDLQDYTYYFVPA 254 (621)
T ss_dssp CCCCS--CHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCHHHHTTH--HHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred cCchh--HHHHHHHHhCC----CCccHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence 33334 88999999986 899999999999999986543211000 122333333443322 1 3
Q ss_pred hHHHHHHHHHHHHhccC
Q 015513 243 QQATKSGLHVLLQACPM 259 (405)
Q Consensus 243 ~~~~~~a~~aL~~L~~~ 259 (405)
+=.+-..++.|..++..
T Consensus 255 ~w~qi~il~ll~~~~~~ 271 (621)
T 2vgl_A 255 PWLSVKLLRLLQCYPPP 271 (621)
T ss_dssp HHHHHHHHHHGGGSSSC
T ss_pred chHHHHHHHHHHHhCCC
Confidence 45666677777777653
No 152
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.55 E-value=0.00037 Score=64.34 Aligned_cols=47 Identities=28% Similarity=0.493 Sum_probs=37.2
Q ss_pred ccCcCCcccCCC----ccc----cCCCCcccHHHHHHHHhcCC---------CCCCCCCCCCCC
Q 015513 10 FICPISLQIMKD----PVT----AITGISYDRESIEKWLKTAK---------DTTCPVTKQPLP 56 (405)
Q Consensus 10 ~~Cpi~~~~m~d----Pv~----~~~g~~~~r~~I~~~~~~~~---------~~~cP~~~~~~~ 56 (405)
.-|+||...+.+ |-. ..|||.|-..||.+|+.... ...||.|+++++
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 469999999888 533 36999999999999997521 135999999874
No 153
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.0021 Score=60.27 Aligned_cols=63 Identities=21% Similarity=0.268 Sum_probs=52.5
Q ss_pred ccCcCCcccCCCcccc-CCCCc--ccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 015513 10 FICPISLQIMKDPVTA-ITGIS--YDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQA 73 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~-~~g~~--~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~ 73 (405)
+.|||++..|+.|+-. .|.|. |+...+.++..+.+.-.||+|.+.+.. .++..+.-+.+.++.
T Consensus 250 L~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~-~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL-ENLAISEFVDDILQN 315 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG-GGEEEBHHHHHHHTT
T ss_pred ecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH-HHeeEcHHHHHHHHh
Confidence 7999999999999965 79998 999998888766556679999999876 888888777766544
No 154
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.36 E-value=0.22 Score=52.75 Aligned_cols=173 Identities=12% Similarity=0.068 Sum_probs=109.7
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
++..|+..+.. ..+..++..++..|..+... +...++.+++.|....++-++..++.++.--.....
T Consensus 508 ai~~LL~~~~e---~~~e~vrR~aalgLGll~~g----------~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 508 AIHDMFTYSQE---TQHGNITRGLAVGLALINYG----------RQELADDLITKMLASDESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTT----------CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHhc---cCcHHHHHHHHHHHHhhhCC----------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC
Confidence 66666666554 25666777777777766432 234567788888775577777777777654444444
Q ss_pred hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHcc-ChhhhHHHHHHHHHh
Q 015513 262 NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRV-SPATNDRAVHILSSI 340 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~-s~~~~e~a~~~L~~L 340 (405)
|.. +|..|++.+.++.+..++..|+.+|+.+..... ..++.+++.+... ....+..+.-+|..+
T Consensus 575 n~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli 639 (963)
T 4ady_A 575 NNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIA 639 (963)
T ss_dssp CHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHH
T ss_pred CHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 432 456677777665466788888888888764432 2466666644443 345666677777777
Q ss_pred cccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccCCC
Q 015513 341 SKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWNNS 392 (405)
Q Consensus 341 ~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~~~ 392 (405)
+...+.. .++..|..+++ +..+.+|+.|...|.++..-.++.
T Consensus 640 ~aGn~~~---------~aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 640 CAGKGLQ---------SAIDVLDPLTK-DPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp TSSSCCH---------HHHHHHHHHHT-CSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred ccCCCcH---------HHHHHHHHHcc-CCCHHHHHHHHHHHHHHhcCCccc
Confidence 7555542 23444444444 778888888888888776544444
No 155
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.28 E-value=0.62 Score=45.29 Aligned_cols=251 Identities=10% Similarity=0.079 Sum_probs=147.4
Q ss_pred hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCch---hhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHH
Q 015513 132 AFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSN---ENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIV 208 (405)
Q Consensus 132 ~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~---~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~ 208 (405)
..++..++.+|+... ..+.....+.++..+..+++ ..-.+..+.+ +....+.....+ .++.-....|..+
T Consensus 76 ~~~~~~~l~lL~~~~---~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~-~~~~~l~~~~~~---~dd~~~ll~a~~l 148 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSD---NEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDP-KQLEQLFDVSLK---GDFQTVLISGFNV 148 (480)
T ss_dssp STTHHHHHHHHHSCC---CHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCT-THHHHHHHHCSC---SSHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhcC---hHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCc-ccchHHHHHHhc---ccchHHHHHHHHH
Confidence 467788889987532 22345666666666655543 2223323332 122223222222 1444444555555
Q ss_pred HHHHHhhhccchhhhcccHHHHHH------HHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhc--chHHHHHHhh
Q 015513 209 LKMVLELASKGLLESTLNLDFFKE------MVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEAN--AVFELIELEL 280 (405)
Q Consensus 209 L~~L~~~~~~~~~i~~~~~g~i~~------Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g--~v~~Lv~lL~ 280 (405)
+..++..... ....++. +...|....+......++.+|..|...++.|..+.+.+ .+|+++.++.
T Consensus 149 ~~ll~~~~~~-------~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~ 221 (480)
T 1ho8_A 149 VSLLVQNGLH-------NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQ 221 (480)
T ss_dssp HHHHTSTTTC-------CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHhccCCc-------cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHH
Confidence 5555432211 1233333 44455542234556689999999999999999998653 5788877665
Q ss_pred cC---CC-------------CCcHHHHHHHHHHHhcCHhhHHHHHhcccch--HHHHHHHHccC--hhhhHHHHHHHHHh
Q 015513 281 TK---PE-------------KSTTELIFNLLAQLCSCADGRLKFREHAGAI--AMVTKRLLRVS--PATNDRAVHILSSI 340 (405)
Q Consensus 281 ~~---~~-------------~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i--~~Lv~~l~~~s--~~~~e~a~~~L~~L 340 (405)
.. .+ --++-.++-+++.|+-.++....+.. .+.. +.|++ +++.+ +.....++++|.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~-~~i~~~~~L~~-i~k~s~KEKvvRv~la~l~Nl 299 (480)
T 1ho8_A 222 RATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQ-KYLSDFLDLLK-LVKITIKEKVSRLCISIILQC 299 (480)
T ss_dssp HHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHH-HHHHCCSHHHHHHHHHHHHHT
T ss_pred HhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHh-cchHHHHHHHH-HHHhhccchhHHHHHHHHHHH
Confidence 21 00 11367788899999888776666543 3322 56666 33333 56677888999998
Q ss_pred cccCCC--HHHHHHHH-hcChHHHHHHHHhcc--CcHHHHHHHHHHHHHhhcccCCCCCcchhh
Q 015513 341 SKFSAT--YEVVLEML-SVGAVSKLCMVTQAD--CEKYLKDRAKEILRLHSNVWNNSPCIQVYL 399 (405)
Q Consensus 341 ~~~~~~--~~~~~~~~-~~G~v~~Ll~ll~~~--~~~~~k~~A~~ll~~l~~~~~~~~~~~~~~ 399 (405)
...... .....+++ ..++ .+++..|+.. .++...+.-..+...|.+....-..|+-|.
T Consensus 300 l~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~ 362 (480)
T 1ho8_A 300 CSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV 362 (480)
T ss_dssp TSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 875431 22344444 3444 5677777543 478888888888888888776666666665
No 156
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.16 E-value=0.12 Score=45.93 Aligned_cols=213 Identities=13% Similarity=0.110 Sum_probs=132.2
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhHHhHHHHHH-hchHHHHHHHHHhhccCCCc--------hhHHHHHHHHHh
Q 015513 93 DQVRKLVRDLDSGHLRISTLKKMEALAMENERNRKSLEE-AFVVRALVLFIITSYKGNKT--------TGLEEALRILSL 163 (405)
Q Consensus 93 ~~i~~lv~~l~~~~~~~~Al~~L~~l~~~~~~~r~~i~~-~g~v~~Lv~lL~~~~~~~~~--------~~~e~A~~~L~~ 163 (405)
+.+..++..+.+++.|..|+.+|..--..-+.--..+=. .|.+..|++-+-+.+..-++ .-..+|+.+|..
T Consensus 3 ~~i~qli~~L~~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQc 82 (268)
T 2fv2_A 3 EKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQC 82 (268)
T ss_dssp HHHHHHHHHTSSTTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHH
Confidence 457778888888888998888775421111111112222 58888887766555432111 114678888888
Q ss_pred cCCCchhhHHhhcccchhHHHHHHHHHhhhcCC-CcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCC
Q 015513 164 VWSPSNENKALVDHHNQDLIGALMWVLQWENND-RHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENIS 242 (405)
Q Consensus 164 L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~-~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~ 242 (405)
++++. +.|..+.++. ..-.|--+|...... .-.-.|-.+.++++.|...++....-.+.+.+.||..++.++.| +
T Consensus 83 vAshp-etr~~Fl~a~--iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G-s 158 (268)
T 2fv2_A 83 VASHP-ETRSAFLAAH--IPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG-S 158 (268)
T ss_dssp HHHCT-TTHHHHHHTT--GGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS-C
T ss_pred HHcCc-chhhHHHHcc--chHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc-c
Confidence 88775 5667766665 332344555431100 12346778888999998765543322234568999999999999 8
Q ss_pred hHHHHHHHHHHHHhccCCchhHHHHh--------hcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHH
Q 015513 243 QQATKSGLHVLLQACPMGGNRVKITE--------ANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFR 309 (405)
Q Consensus 243 ~~~~~~a~~aL~~L~~~~~n~~~~v~--------~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~ 309 (405)
.-.+..|.-.+..+-.++.+-..+.. ..++..+|.-+...++..+..+.+..-.+|+.++..|.++.
T Consensus 159 elSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~ 233 (268)
T 2fv2_A 159 ELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALR 233 (268)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88888888888877666554333322 12333344433333456777888888888888888887764
No 157
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.03 E-value=0.42 Score=50.64 Aligned_cols=138 Identities=11% Similarity=0.023 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
.++.+++.|.. ..++.+|.-|+.++..-.... + ...+|+.|+..+.+..+..+++.|+.+|..+....+
T Consensus 542 ~~~~li~~L~~---~~dp~vRygaa~alglAyaGT------G--n~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 542 LADDLITKMLA---SDESLLRYGGAFTIALAYAGT------G--NNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp GGHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTS------C--CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHHHhcCC------C--CHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH
Confidence 56677777765 255666666655554322211 1 345678788877765577899999999988876543
Q ss_pred hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhc
Q 015513 262 NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSIS 341 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~ 341 (405)
..++.++++|....+..++..|..+|+.++..+.... ++..|..+.......++..|+-+|..+.
T Consensus 611 --------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~-------aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 611 --------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS-------AIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp --------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH-------HHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH-------HHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 3567777766654477899999999999986543322 2344444222334566777888887776
Q ss_pred ccCC
Q 015513 342 KFSA 345 (405)
Q Consensus 342 ~~~~ 345 (405)
....
T Consensus 676 ~gtn 679 (963)
T 4ady_A 676 IQQT 679 (963)
T ss_dssp TTCC
T ss_pred cCCc
Confidence 5433
No 158
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=95.97 E-value=0.0055 Score=57.26 Aligned_cols=64 Identities=14% Similarity=0.251 Sum_probs=52.9
Q ss_pred cccCcCCcccCCCcccc-CCCCc--ccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 015513 9 YFICPISLQIMKDPVTA-ITGIS--YDRESIEKWLKTAKDTTCPVTKQPLPRDSGLTSNHTLRRLIQA 73 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv~~-~~g~~--~~r~~I~~~~~~~~~~~cP~~~~~~~~~~~~~~n~~l~~~I~~ 73 (405)
.+.|||+...|+.|+-. .|.|. |+...+-++..+.+.-.||+|++.+.. .++..+.-+.+.+..
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~-~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY-ESLILDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG-GGEEEBHHHHHHHTT
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH-HHeEEcHHHHHHHHh
Confidence 37999999999999965 79998 999998888776556679999999876 788888777666543
No 159
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.83 E-value=0.25 Score=53.04 Aligned_cols=223 Identities=10% Similarity=0.097 Sum_probs=120.6
Q ss_pred hhHHHHHHHHHhcCCCchhhHHhhcc---c-chhHHHHH----HHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhh
Q 015513 152 TGLEEALRILSLVWSPSNENKALVDH---H-NQDLIGAL----MWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLES 223 (405)
Q Consensus 152 ~~~e~A~~~L~~L~~~~~~~~~~i~~---~-g~~~i~~L----v~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~ 223 (405)
..++.|+.++..++.........+.. . . ..+.+ +..|.+.. +.++-+|..|+++|..++..-. ....
T Consensus 420 ~~reaal~algaia~~~~~~~~~~~~~~~~~~--l~~~l~~~v~p~l~~~~-~~~p~vr~~a~~~lg~~~~~~~--~~~l 494 (960)
T 1wa5_C 420 KFKDLYIYLFTALAINGNITNAGVSSTNNLLN--VVDFFTKEIAPDLTSNN-IPHIILRVDAIKYIYTFRNQLT--KAQL 494 (960)
T ss_dssp HHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC--HHHHHHHHTHHHHHCSS-CSCHHHHHHHHHHHHHTGGGSC--HHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCccccccccc--HHHHHHHHhHHHhcCCC-CCCceehHHHHHHHHHHHhhCC--HHHH
Confidence 45788888888886421111111110 0 1 33333 33344400 0278899999999999986421 1112
Q ss_pred cccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc---------hhHHHHh--hcchHHHHHHhhcCC----CCCcH
Q 015513 224 TLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG---------NRVKITE--ANAVFELIELELTKP----EKSTT 288 (405)
Q Consensus 224 ~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~---------n~~~~v~--~g~v~~Lv~lL~~~~----~~~~~ 288 (405)
...++.+++.|.+. ++.++..|+.||.+++...+ .+..+.. ...++.|+.++...+ .....
T Consensus 495 ---~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~ 570 (960)
T 1wa5_C 495 ---IELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAEN 570 (960)
T ss_dssp ---HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSC
T ss_pred ---HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccccc
Confidence 36788888888876 78999999999999997422 2333322 245555666665531 01135
Q ss_pred HHHHHHHHHHhcCHh-hHHHHHhcccchHHHHHHHHcc--C---hhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHH
Q 015513 289 ELIFNLLAQLCSCAD-GRLKFREHAGAIAMVTKRLLRV--S---PATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKL 362 (405)
Q Consensus 289 e~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~~l~~~--s---~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~L 362 (405)
+.+..+|..++.... .-...+. ..++.|+..+... + .........++..+...... +... -+....++.+
T Consensus 571 e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~-~~~~-~~~~~~~p~~ 646 (960)
T 1wa5_C 571 EFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQR-QNLP-LLVDSMMPTF 646 (960)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCG-GGHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCc-chHH-HHHHHHHHHH
Confidence 677888877764221 1111111 1344455433322 1 12334456666666654221 1222 2334567888
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhcc
Q 015513 363 CMVTQADCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 363 l~ll~~~~~~~~k~~A~~ll~~l~~~ 388 (405)
..+|+.+. ....+.+-.++..+.+.
T Consensus 647 ~~iL~~~~-~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 647 LTVFSEDI-QEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHHHHTTC-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHhhh-HhhHHHHHHHHHHHHHh
Confidence 88887543 33455566666655544
No 160
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.28 E-value=0.33 Score=45.72 Aligned_cols=136 Identities=10% Similarity=0.015 Sum_probs=99.5
Q ss_pred HHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhh
Q 015513 136 RALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLEL 215 (405)
Q Consensus 136 ~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~ 215 (405)
..+++++.+. +...+.-..-.+.+++...++ .+. ++..|.+-+++ +++-.+..|+++|.++...
T Consensus 71 ~~v~kl~~s~----d~~lKrLvYLyl~~~~~~~~e---~iL-----v~Nsl~kDl~~----~N~~iR~lALRtL~~I~~~ 134 (355)
T 3tjz_B 71 FAMTKLFQSN----DPTLRRMCYLTIKEMSCIAED---VII-----VTSSLTKDMTG----KEDSYRGPAVRALCQITDS 134 (355)
T ss_dssp HHHHGGGGCC----CHHHHHHHHHHHHHHTTTSSC---GGG-----GHHHHHHHHHS----SCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHhcCC----CHHHHHHHHHHHHHhCCCHHH---HHH-----HHHHHHhhcCC----CcHhHHHHHHHHHhcCCCH
Confidence 3345555543 234466666677777765333 232 57778888887 8999999999999999654
Q ss_pred hccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHH
Q 015513 216 ASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLL 295 (405)
Q Consensus 216 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L 295 (405)
+ + -....+.+.+.|.+. ++-+++.|+-+.+.|...... +++ +.+..+-+++.+. +..+.-+|+++|
T Consensus 135 ~-----m---~~~l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~pe---~v~-~~~~~l~~ll~d~-n~~V~~~Al~lL 200 (355)
T 3tjz_B 135 T-----M---LQAIERYMKQAIVDK-VPSVSSSALVSSLHLLKCSFD---VVK-RWVNEAQEAASSD-NIMVQYHALGLL 200 (355)
T ss_dssp T-----T---HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTCHH---HHH-TTHHHHHHHTTCS-SHHHHHHHHHHH
T ss_pred H-----H---HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCHH---HHH-HHHHHHHHHhcCC-CccHHHHHHHHH
Confidence 3 1 235667788888887 999999999999999864432 343 6888899999775 677889999999
Q ss_pred HHHhcC
Q 015513 296 AQLCSC 301 (405)
Q Consensus 296 ~~L~~~ 301 (405)
..++..
T Consensus 201 ~ei~~~ 206 (355)
T 3tjz_B 201 YHVRKN 206 (355)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 999864
No 161
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.13 E-value=0.38 Score=42.68 Aligned_cols=155 Identities=15% Similarity=0.090 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhhccCCCc-hhHHHHHHHHHhcCC-CchhhHHhhcccchhHH
Q 015513 106 HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITSYKGNKT-TGLEEALRILSLVWS-PSNENKALVDHHNQDLI 183 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~-~~~e~A~~~L~~L~~-~~~~~~~~i~~~g~~~i 183 (405)
...++|+.-|+-++. +++.|..+.++...-.|-.+|...+..... -.+-.+++++..|.+ ++.+.-..+.+.. .|
T Consensus 71 nRVcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tE--ii 147 (268)
T 2fv2_A 71 NRVCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTE--II 147 (268)
T ss_dssp HHHHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTT--HH
T ss_pred hHHHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhh--HH
Confidence 455778888888885 788899999999998999999754322111 235567788888765 3445566666676 99
Q ss_pred HHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccH-------HHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 015513 184 GALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNL-------DFFKEMVKLLKENISQQATKSGLHVLLQA 256 (405)
Q Consensus 184 ~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~-------g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 256 (405)
|..++.+.. |+.-.+.-|.-++..+-.++.+-.-+. ... .++..+|.-+....++...+...++-..|
T Consensus 148 plCLrime~----GselSKtvAtfIlqKIL~dd~GL~YiC-~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRL 222 (268)
T 2fv2_A 148 PLCLRIMES----GSELSKTVATFILQKILLDDTGLAYIC-QTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRL 222 (268)
T ss_dssp HHHHHHHHH----SCHHHHHHHHHHHHHHHHSHHHHHHHT-SSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh----ccHHHHHHHHHHHHHHhccchhHHHHH-ccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 999999998 899999999999999887765444332 222 23333343333334889999999999999
Q ss_pred ccCCchhHHHHh
Q 015513 257 CPMGGNRVKITE 268 (405)
Q Consensus 257 ~~~~~n~~~~v~ 268 (405)
+.++..|..+-+
T Consensus 223 sdn~rar~aL~~ 234 (268)
T 2fv2_A 223 SDNPRAREALRQ 234 (268)
T ss_dssp TTSHHHHHHHHH
T ss_pred hcCHHHHHHHHH
Confidence 998888777654
No 162
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=94.87 E-value=1 Score=44.64 Aligned_cols=246 Identities=11% Similarity=0.095 Sum_probs=144.8
Q ss_pred HHHHHHHhcc--hhHHHHHHHHHHHHHHhhHH--hHHHHHHhchHHHHHHHHH-hhcc----CC-CchhHHHHHHHHHhc
Q 015513 95 VRKLVRDLDS--GHLRISTLKKMEALAMENER--NRKSLEEAFVVRALVLFII-TSYK----GN-KTTGLEEALRILSLV 164 (405)
Q Consensus 95 i~~lv~~l~~--~~~~~~Al~~L~~l~~~~~~--~r~~i~~~g~v~~Lv~lL~-~~~~----~~-~~~~~e~A~~~L~~L 164 (405)
...|+..+-+ .+.|.-|+..||.+.+.... .|..-...+..-.|+.+|. +.+. +. -.+++|.|+.+|..+
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL 255 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI 255 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence 3456666644 39999999999998876531 1110000133334444442 2221 11 126789999888888
Q ss_pred CCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChH
Q 015513 165 WSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQ 244 (405)
Q Consensus 165 ~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~ 244 (405)
.+-++. .. .+..|+..+.. ..-+++.-+...|+++ .+ .+. .-.++++.++.-|.+. +.+
T Consensus 256 -~hLp~e------~~--IL~qLV~~l~~----~~WEVRHGGLLGLKYL---~D---LL~-~Ld~Vv~aVL~GL~D~-DDD 314 (800)
T 3oc3_A 256 -YPLIGP------ND--IIEQLVGFLDS----GDWQVQFSGLIALGYL---KE---FVE-DKDGLCRKLVSLLSSP-DED 314 (800)
T ss_dssp -TTTSCS------CC--HHHHHTTGGGC----SCHHHHHHHHHHHHHT---GG---GCC-CHHHHHHHHHHHTTCS-SHH
T ss_pred -HhCChh------HH--HHHHHHhhcCC----CCeeehhhhHHHHHHH---HH---HHH-HHHHHHHHHHhhcCCc-ccH
Confidence 544331 33 67777766665 7899999999999999 11 111 1247888888888887 889
Q ss_pred HHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCC-CCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHH
Q 015513 245 ATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPE-KSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLL 323 (405)
Q Consensus 245 ~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~-~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~ 323 (405)
++..|+.+|.-++ .++.. ..++..|.+.|.+..| ..........|+.|+..+.. ......-||.|.-.+.
T Consensus 315 VRAVAAetLiPIA-~p~~l-----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLR 385 (800)
T 3oc3_A 315 IKLLSAELLCHFP-ITDSL-----DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFT 385 (800)
T ss_dssp HHHHHHHHHTTSC-CSSTH-----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGT
T ss_pred HHHHHHHHhhhhc-chhhH-----HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhc
Confidence 9999999999999 22111 2355667777776422 23466677788888876631 1122344555555332
Q ss_pred ccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHH
Q 015513 324 RVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILR 383 (405)
Q Consensus 324 ~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~ 383 (405)
.....++...+.+|..+. +. .++..+..-+-.+..+.+++.+..+.+
T Consensus 386 HtITSVR~AVL~TL~tfL----~~---------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 386 SPVPEVRTSILNMVKNLS----EE---------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CSSHHHHHHHHHHTTTCC----CH---------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHH----hh---------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 333455666666655544 11 123333332223456667776666654
No 163
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.80 E-value=0.022 Score=50.56 Aligned_cols=48 Identities=19% Similarity=0.430 Sum_probs=38.3
Q ss_pred ccCcCCcccCCCccccC-CCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAI-TGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
..|.||.++..-=+.-+ |||.|-..|+.+|++..+...||.|+...+.
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 46999998887544333 9999999999999976545689999987643
No 164
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.80 E-value=1.3 Score=40.75 Aligned_cols=157 Identities=10% Similarity=-0.007 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHH-HHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHH
Q 015513 106 HLRISTLKKMEALAMENERNRKSLEEAFVVRALV-LFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIG 184 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv-~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~ 184 (405)
+.+.-++.-||.++. ++.....+.+.+.-..++ .++........+..+-.++.++.|+..+.. .+..+.......++
T Consensus 117 ~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-g~~~l~~~~~~il~ 194 (304)
T 3ebb_A 117 DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-GQKLMMSQRESLMS 194 (304)
T ss_dssp TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-HHHHHHHTHHHHHH
T ss_pred HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-hHHHHHHHHHHHHH
Confidence 555666777776654 333334444332223333 233221112222346778899999987653 45555432112455
Q ss_pred HHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhH
Q 015513 185 ALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRV 264 (405)
Q Consensus 185 ~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~ 264 (405)
.+...+.+ .+...+..++.++.|++.........- .....+..+..+++...+.++.-.++.||.+|...+....
T Consensus 195 ~~~~~~~~----~nknl~iA~ATl~~NlAv~~~~~~~~~-~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~ 269 (304)
T 3ebb_A 195 HAIELKSG----SNKNIHIALATLALNYSVCFHKDHNIE-GKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAV 269 (304)
T ss_dssp HHHGGGSS----CCHHHHHHHHHHHHHHHHHHHHSCCHH-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcC----CChhHHHHHHHHHHHHHHHHhhcCCch-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHH
Confidence 54444443 678899999999999986432111111 1123455555666655588999999999999998766655
Q ss_pred HHHhh
Q 015513 265 KITEA 269 (405)
Q Consensus 265 ~~v~~ 269 (405)
.+.+.
T Consensus 270 ~lak~ 274 (304)
T 3ebb_A 270 QLAKS 274 (304)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 165
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.30 E-value=0.24 Score=44.78 Aligned_cols=184 Identities=10% Similarity=0.069 Sum_probs=107.1
Q ss_pred HHHhcc--hhHHHHHHHHHHHHHHhhHHhH--HHHH-Hh-chHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCch---
Q 015513 99 VRDLDS--GHLRISTLKKMEALAMENERNR--KSLE-EA-FVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSN--- 169 (405)
Q Consensus 99 v~~l~~--~~~~~~Al~~L~~l~~~~~~~r--~~i~-~~-g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~--- 169 (405)
-..+.+ ...|.+|+..|..+....+... .... .- ..++.+-+.+. +.+..++..++.+|..++..-.
T Consensus 15 ~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~----DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 15 EERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT----DSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT----CSSHHHHHHHHHHHHHHHTTCC---
T ss_pred HHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHhhhhh
Confidence 345543 4889999999987765432211 1111 11 22333344443 4445667888877776643210
Q ss_pred -hhHHhhcccchhHHHHHHHH-HhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHH
Q 015513 170 -ENKALVDHHNQDLIGALMWV-LQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATK 247 (405)
Q Consensus 170 -~~~~~i~~~g~~~i~~Lv~l-L~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~ 247 (405)
.........+ ..++.|+.- |.+ ....++..|..++..+...... ...+++.+...+.+. ++.++.
T Consensus 91 ~~~~~~~~~~~-~~l~~lveK~l~~----~k~~~~~~a~~~l~~~~~~~~~-------~~~~~e~l~~~l~~K-npkv~~ 157 (278)
T 4ffb_C 91 LKNAHNITLIS-TWTPLLVEKGLTS----SRATTKTQSMSCILSLCGLDTS-------ITQSVELVIPFFEKK-LPKLIA 157 (278)
T ss_dssp CCHHHHHHHHH-HHHHHHHHHTSSC----CCHHHHHHHHHHHHHHHHTSSS-------SHHHHHHHGGGGGCS-CHHHHH
T ss_pred cccchhHHHHH-HHHHHHHHHHhcC----ccHHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcc-CHHHHH
Confidence 0111111111 156777753 565 6778888888888887643321 123456677777777 899999
Q ss_pred HHHHHHHHhccC--Cc--hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcC
Q 015513 248 SGLHVLLQACPM--GG--NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSC 301 (405)
Q Consensus 248 ~a~~aL~~L~~~--~~--n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~ 301 (405)
.++..|..+-.. .. +....+. .+++.+..+|.+. +..+++.|..++..+-..
T Consensus 158 ~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~-~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 158 AAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHG-DRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCS-SHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHH
Confidence 999888876542 11 2222222 3566777888774 889999999999888653
No 166
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=92.80 E-value=1.1 Score=41.10 Aligned_cols=179 Identities=11% Similarity=-0.007 Sum_probs=100.0
Q ss_pred hHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccch--hHHHHHHHHHhhhcCCCcHHhHHHHHHHHHH
Q 015513 134 VVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQ--DLIGALMWVLQWENNDRHVAVKTSAMIVLKM 211 (405)
Q Consensus 134 ~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~--~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~ 211 (405)
.+..+.++++-+. + .+--++.+|+.+..+. .....+.+.+. ..+..+...+.+ ..++..+.-+++++.|
T Consensus 104 ~l~~l~kil~WP~-~----~~fPvLDLlRl~~l~p-~~~~~~~~~~~~~~l~~~l~~~~~~---~~~p~n~ml~lR~l~N 174 (304)
T 3ebb_A 104 QLQILWKAINCPE-D----IVFPALDILRLSIKHP-SVNENFCNEKEGAQFSSHLINLLNP---KGKPANQLLALRTFCN 174 (304)
T ss_dssp HHHHHHHHHTSCT-T----TCHHHHHHHHHHTTSH-HHHHHHHSTTTHHHHHHHHHHTTCT---TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCH-H----hHHHHHHHHHHHHcCc-cHHHHhhccccchHHHHHHHHhcCC---CCChHHHHHHHHHHHH
Confidence 4667777763322 1 2577788888777654 33344433320 122223333332 1456668899999999
Q ss_pred HHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCC-chhHHHHhhcchHHHHHHhhcCCCCCcHHH
Q 015513 212 VLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMG-GNRVKITEANAVFELIELELTKPEKSTTEL 290 (405)
Q Consensus 212 L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~-~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~ 290 (405)
+-.....+..+.-.....++.+...+.+. +..++.+++.+++|++..- ..+..=...-++..+..++....+.+..-.
T Consensus 175 lF~~~~g~~~l~~~~~~il~~~~~~~~~~-nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR 253 (304)
T 3ebb_A 175 CFVGQAGQKLMMSQRESLMSHAIELKSGS-NKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFR 253 (304)
T ss_dssp GGGSHHHHHHHHHTHHHHHHHHHGGGSSC-CHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHH
Confidence 98877766655411123444444444333 7788999999999998731 111000011244455555554446677888
Q ss_pred HHHHHHHHhcCHhhHHHHHhcccchHHHHHHHH
Q 015513 291 IFNLLAQLCSCADGRLKFREHAGAIAMVTKRLL 323 (405)
Q Consensus 291 a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~ 323 (405)
++.+|++|...+....++... -++...++.+.
T Consensus 254 ~LvALGtL~~~~~~~~~lak~-l~~~~~v~~~~ 285 (304)
T 3ebb_A 254 LLVALGTLISDDSNAVQLAKS-LGVDSQIKKYS 285 (304)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-TTHHHHGGGGG
T ss_pred HHHHHHHHHhCChhHHHHHHH-cCHHHHHHHHH
Confidence 999999998754444444332 24444444333
No 167
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=92.21 E-value=4 Score=38.27 Aligned_cols=138 Identities=10% Similarity=0.031 Sum_probs=97.4
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
....+++++.+ .+.+.+.-.-..+.+++...+. .+. ++..|.+=+.++ ++-.+..|+++|.++...+
T Consensus 69 lf~~v~kl~~s----~d~~lKrLvYLyl~~~~~~~~e--~iL-----v~Nsl~kDl~~~-N~~iR~lALRtL~~I~~~~- 135 (355)
T 3tjz_B 69 AFFAMTKLFQS----NDPTLRRMCYLTIKEMSCIAED--VII-----VTSSLTKDMTGK-EDSYRGPAVRALCQITDST- 135 (355)
T ss_dssp HHHHHHGGGGC----CCHHHHHHHHHHHHHHTTTSSC--GGG-----GHHHHHHHHHSS-CHHHHHHHHHHHHHHCCTT-
T ss_pred HHHHHHHHhcC----CCHHHHHHHHHHHHHhCCCHHH--HHH-----HHHHHHhhcCCC-cHhHHHHHHHHHhcCCCHH-
Confidence 34556677777 8899998888888888876433 222 245667777777 8999999999999997644
Q ss_pred hhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhc
Q 015513 262 NRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSIS 341 (405)
Q Consensus 262 n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~ 341 (405)
+++ ...+++-..|.+. ++-++..|+-+...|...... +++ +.+..+-+++...++...-+|+.+|..++
T Consensus 136 ----m~~-~l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~pe---~v~--~~~~~l~~ll~d~n~~V~~~Al~lL~ei~ 204 (355)
T 3tjz_B 136 ----MLQ-AIERYMKQAIVDK-VPSVSSSALVSSLHLLKCSFD---VVK--RWVNEAQEAASSDNIMVQYHALGLLYHVR 204 (355)
T ss_dssp ----THH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTCHH---HHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ----HHH-HHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCHH---HHH--HHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 222 3566677777775 778999999999998754322 222 46777777444445566778888888888
Q ss_pred cc
Q 015513 342 KF 343 (405)
Q Consensus 342 ~~ 343 (405)
..
T Consensus 205 ~~ 206 (355)
T 3tjz_B 205 KN 206 (355)
T ss_dssp TT
T ss_pred hh
Confidence 64
No 168
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=91.87 E-value=11 Score=39.86 Aligned_cols=221 Identities=12% Similarity=0.092 Sum_probs=121.9
Q ss_pred hhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHH
Q 015513 152 TGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFK 231 (405)
Q Consensus 152 ~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~ 231 (405)
..+|.++.++..++..-.+ .... .++.++..+.... .+++.++..++++|..++..-....... ..+++
T Consensus 464 ~~~eaal~al~~i~~~~~~-----~~~~--~l~~l~~~l~~l~-~~~~~vr~~~~~~l~~~~~~l~~~~~~l---~~vl~ 532 (963)
T 2x19_B 464 QHTEALLYGFQSIAETIDV-----NYSD--VVPGLIGLIPRIS-ISNVQLADTVMFTIGALSEWLADHPVMI---NSVLP 532 (963)
T ss_dssp HHHHHHHHHHHHHTTSCCS-----SCCS--HHHHHHHHGGGSC-CCSHHHHHHHHHHHHHTHHHHHHCHHHH---TTTHH
T ss_pred HHHHHHHHHHHHHHhhcCc-----hhhH--HHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHHhCHHHH---HHHHH
Confidence 4578899999988754322 1123 5666666664321 1467789999999998876422111222 25667
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHh--hcchHHHHHHhhcCC-CCCcHHHHHHHHHHHhcC--HhhHH
Q 015513 232 EMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITE--ANAVFELIELELTKP-EKSTTELIFNLLAQLCSC--ADGRL 306 (405)
Q Consensus 232 ~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~--~g~v~~Lv~lL~~~~-~~~~~e~a~~~L~~L~~~--~~~~~ 306 (405)
.|+..|. ++.++..|+.+|.+++.. .+..++. ...+..|..++..+. +...++.+..++..++.. .+.+.
T Consensus 533 ~l~~~l~---~~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 533 LVLHALG---NPELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHTT---CGGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhC---CchHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 7777774 368899999999999963 2222321 234444455555421 345677788888888753 24444
Q ss_pred HHHhcccchHHHHHHHHc---c--ChhhhH---HHHHHHHHhcccCC----C----------------HHHHHHHHhcCh
Q 015513 307 KFREHAGAIAMVTKRLLR---V--SPATND---RAVHILSSISKFSA----T----------------YEVVLEMLSVGA 358 (405)
Q Consensus 307 ~i~~~~g~i~~Lv~~l~~---~--s~~~~e---~a~~~L~~L~~~~~----~----------------~~~~~~~~~~G~ 358 (405)
..+. ..++++...+.. . ++.... ....+|..+.+.-. . ...... +....
T Consensus 608 ~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 684 (963)
T 2x19_B 608 KNLH--SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQV 684 (963)
T ss_dssp HHHH--HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHH
Confidence 4433 255666654322 1 122222 22233333332211 0 001111 22345
Q ss_pred HHHHHHHHhcc-CcHHHHHHHHHHHHHhhcccCC
Q 015513 359 VSKLCMVTQAD-CEKYLKDRAKEILRLHSNVWNN 391 (405)
Q Consensus 359 v~~Ll~ll~~~-~~~~~k~~A~~ll~~l~~~~~~ 391 (405)
++.+..+++.. .+....+.+..+++.+....+.
T Consensus 685 ~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~ 718 (963)
T 2x19_B 685 FQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLD 718 (963)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcc
Confidence 66666666543 2567888888888877665543
No 169
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=91.73 E-value=0.95 Score=40.70 Aligned_cols=189 Identities=10% Similarity=0.059 Sum_probs=103.6
Q ss_pred HHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccch---hhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccC
Q 015513 183 IGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGL---LESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPM 259 (405)
Q Consensus 183 i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~---~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~ 259 (405)
+| |-.-|.+ .+...|..|...|..+........ .....-....+.+-+.+.+. +..+...++.+|..++..
T Consensus 12 lp-l~e~l~s----k~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~ 85 (278)
T 4ffb_C 12 LP-LEERLTY----KLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDA 85 (278)
T ss_dssp CC-HHHHTTC----SSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTT
T ss_pred CC-HHHhccc----CcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHH
Confidence 44 4456776 788999999998887654321110 00000012234455566676 899999999999888753
Q ss_pred Cc----hhHH--HHhhcchHHHHHH-hhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHH----ccChh
Q 015513 260 GG----NRVK--ITEANAVFELIEL-ELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLL----RVSPA 328 (405)
Q Consensus 260 ~~----n~~~--~v~~g~v~~Lv~l-L~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~----~~s~~ 328 (405)
-. .+.. ..-..++|.|++- |.+. ...+++.+..+|..++.... ....+++.+. ..++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~lveK~l~~~-k~~~~~~a~~~l~~~~~~~~----------~~~~~~e~l~~~l~~Knpk 154 (278)
T 4ffb_C 86 FASSSLKNAHNITLISTWTPLLVEKGLTSS-RATTKTQSMSCILSLCGLDT----------SITQSVELVIPFFEKKLPK 154 (278)
T ss_dssp CC---CCHHHHHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHTSS----------SSHHHHHHHGGGGGCSCHH
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHhccCHH
Confidence 21 1222 2234578888875 5443 45677888888877653211 1122222222 22455
Q ss_pred hhHHHHHHHHHhccc-CCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccC
Q 015513 329 TNDRAVHILSSISKF-SATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWN 390 (405)
Q Consensus 329 ~~e~a~~~L~~L~~~-~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~ 390 (405)
.+..++..|..+... ..........+. ..++.+..+|. +.++.+|+.|..++--+-+..+
T Consensus 155 v~~~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~-d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 155 LIAAAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAG-HGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHT-CSSHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHhC
Confidence 555556555554332 111000111111 24455666666 6789999999998887766544
No 170
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=91.65 E-value=8.8 Score=40.89 Aligned_cols=220 Identities=15% Similarity=0.069 Sum_probs=120.8
Q ss_pred hhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhc-CCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHH
Q 015513 152 TGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWEN-NDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFF 230 (405)
Q Consensus 152 ~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~-~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i 230 (405)
..+|.|+.+|..++..-.... .. .++.++.++..-. ++.++.++..++++|..++..-....... ..++
T Consensus 479 ~~~eaal~~l~~iae~~~~~~-----~~--~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l---~~vl 548 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGEE-----KR--QIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI---PPAI 548 (971)
T ss_dssp HHHHHHHHHHHHTTTC-----------C--HHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH---HHHH
T ss_pred HHHHHHHHHHHHHHhhcChhh-----hH--HHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH---HHHH
Confidence 458899999999876532211 12 5666666553211 01378889999999999886432222222 3677
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHh--hcchHHHHHHhhcCC-CCCcHHHHHHHHHHHhcC--HhhH
Q 015513 231 KEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITE--ANAVFELIELELTKP-EKSTTELIFNLLAQLCSC--ADGR 305 (405)
Q Consensus 231 ~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~--~g~v~~Lv~lL~~~~-~~~~~e~a~~~L~~L~~~--~~~~ 305 (405)
+.|++.| + +.++..|+.++.+++.. .+..+.. ...+..|.+++..+. +...++.+..++..++.. .+.+
T Consensus 549 ~~l~~~l-~---~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~ 622 (971)
T 2x1g_F 549 NLLVRGL-N---SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEI 622 (971)
T ss_dssp HHHHHHH-H---SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHh-C---hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHH
Confidence 7777777 3 46899999999999953 2333332 245555556666531 345677788888887653 2444
Q ss_pred HHHHhcccchHHHHHHHHcc------ChhhhHHHHHHHHHhcccC---CC-----------HHHHHHHHhcChHHHHHHH
Q 015513 306 LKFREHAGAIAMVTKRLLRV------SPATNDRAVHILSSISKFS---AT-----------YEVVLEMLSVGAVSKLCMV 365 (405)
Q Consensus 306 ~~i~~~~g~i~~Lv~~l~~~------s~~~~e~a~~~L~~L~~~~---~~-----------~~~~~~~~~~G~v~~Ll~l 365 (405)
...+. ..++++++.+... +..........+..|+..- .. .+.... .....++.+..+
T Consensus 623 ~~~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~ 699 (971)
T 2x1g_F 623 PKYLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRI 699 (971)
T ss_dssp HHHHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHHTTHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHH
Confidence 44332 2445555533221 1112233344444443210 00 000011 123466667677
Q ss_pred Hhcc-CcHHHHHHHHHHHHHhhcccC
Q 015513 366 TQAD-CEKYLKDRAKEILRLHSNVWN 390 (405)
Q Consensus 366 l~~~-~~~~~k~~A~~ll~~l~~~~~ 390 (405)
++.. .++.+.+.+..+++.+....+
T Consensus 700 l~~~~~~~~v~e~~~~~~~~~~~~~~ 725 (971)
T 2x1g_F 700 AEMWVEEIDVLEAACSAMKHAITNLR 725 (971)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHhhh
Confidence 7543 366888888888887665543
No 171
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=91.11 E-value=6.3 Score=33.29 Aligned_cols=215 Identities=11% Similarity=0.061 Sum_probs=139.9
Q ss_pred hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHH
Q 015513 132 AFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKM 211 (405)
Q Consensus 132 ~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~ 211 (405)
...+..++.+|.+ +.+ .++.+|+.++..++..-++..+ . .+..|+-+++. +.....-..-+.+++.
T Consensus 31 ~~~l~~lI~~LDD---Dlw-tV~kNAl~vi~~i~~~~~el~e-----p--l~~kL~vm~~k---sEaIpltqeIa~a~G~ 96 (253)
T 2db0_A 31 ESVLKKLIELLDD---DLW-TVVKNAISIIMVIAKTREDLYE-----P--MLKKLFSLLKK---SEAIPLTQEIAKAFGQ 96 (253)
T ss_dssp HHHHHHHHHHTTC---SCH-HHHHHHHHHHHHHHTTCGGGHH-----H--HHHHHHHHHHH---CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc---HHH-HHHHhHHHHHHHHHHHhHHHHH-----H--HHHHHHHHHhh---cccCchHHHHHHHHhH
Confidence 3556677777753 222 3689999999999865544221 2 56667777775 2666666667788888
Q ss_pred HHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc-CCchhHHHHhhcchHHHHHHhhcCCCCCcHHH
Q 015513 212 VLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP-MGGNRVKITEANAVFELIELELTKPEKSTTEL 290 (405)
Q Consensus 212 L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~-~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~ 290 (405)
++.... .++ .+.+|.|..=.+-+ +++.+-+-.-+|..++. +++.- .+++.-+..++.+. + .+.
T Consensus 97 la~i~P---e~v---~~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltsk-d---~~D 160 (253)
T 2db0_A 97 MAKEKP---ELV---KSMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSK-N---RED 160 (253)
T ss_dssp HHHHCH---HHH---HHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCS-S---HHH
T ss_pred HHHhCH---HHH---HhhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCC-C---hHH
Confidence 875432 121 24455555555556 89999999999988886 33222 34566678888753 4 456
Q ss_pred HHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccC
Q 015513 291 IFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADC 370 (405)
Q Consensus 291 a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~ 370 (405)
=+.+|.-+..-+++.-+-+. -.+|.|..+|.....-.+..++.+|.+|+...+ ..+.. +..-+.-+. +.
T Consensus 161 kl~aLnFi~alGen~~~yv~--PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np--klRki------i~~kl~e~~-D~ 229 (253)
T 2db0_A 161 KLTALNFIEAMGENSFKYVN--PFLPRIINLLHDGDEIVRASAVEALVHLATLND--KLRKV------VIKRLEELN-DT 229 (253)
T ss_dssp HHHHHHHHHTCCTTTHHHHG--GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH--HHHHH------HHHHHHHCC-CS
T ss_pred HHHHHHHHHHHhccCccccC--cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH--HHHHH------HHHHHHHhc-Cc
Confidence 66777777777777666543 378999886655567789999999999997643 23333 223334444 66
Q ss_pred cHHHHHHHHHHHHHhhc
Q 015513 371 EKYLKDRAKEILRLHSN 387 (405)
Q Consensus 371 ~~~~k~~A~~ll~~l~~ 387 (405)
|+-++.+..+-|..+.-
T Consensus 230 S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 230 SSLVNKTVKEGISRLLL 246 (253)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77778777776655443
No 172
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=90.89 E-value=4.6 Score=36.14 Aligned_cols=100 Identities=12% Similarity=0.114 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
.+|.|+.-+.. ....+|+.+-.+|..+..... -....+.+++-+++. +..++..++..|..+-....
T Consensus 133 ~lP~LveKlGd----~k~~vR~~~r~il~~l~~v~~--------~~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 133 FVPYLLLKTGE----AKDNMRTSVRDIVNVLSDVVG--------PLKMTPMLLDALKSK-NARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp HHHHHHHGGGC----SSHHHHHHHHHHHHHHHHHHC--------HHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCC----ChHHHHHHHHHHHHHHHHHCC--------HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC
Confidence 78888887776 677788888888877764321 224566777777777 89999999988888754221
Q ss_pred hhHHHHhhcch---HHHHHHhhcCCCCCcHHHHHHHHHHHh
Q 015513 262 NRVKITEANAV---FELIELELTKPEKSTTELIFNLLAQLC 299 (405)
Q Consensus 262 n~~~~v~~g~v---~~Lv~lL~~~~~~~~~e~a~~~L~~L~ 299 (405)
-. -..++ |.+.+++.+. +..+++.|+.++..+-
T Consensus 200 ~~----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 200 IS----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACF 235 (266)
T ss_dssp SG----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHH
T ss_pred CC----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence 11 24578 9999999884 8889999999987664
No 173
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=90.76 E-value=7.9 Score=33.78 Aligned_cols=161 Identities=14% Similarity=0.082 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhhHHh-HHHHHHhchHHHHHHHHHhhccCC-------CchhHHHHHHHHHhcCCCchhhHHhhcccchhH
Q 015513 111 TLKKMEALAMENERN-RKSLEEAFVVRALVLFIITSYKGN-------KTTGLEEALRILSLVWSPSNENKALVDHHNQDL 182 (405)
Q Consensus 111 Al~~L~~l~~~~~~~-r~~i~~~g~v~~Lv~lL~~~~~~~-------~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~ 182 (405)
-+..|+...+.++.. -+.+ ..||+..|+.+|....... +...+.+++.+|..+.........++.... +
T Consensus 21 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~--~ 97 (233)
T 2f31_A 21 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEE--G 97 (233)
T ss_dssp HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSS--H
T ss_pred HHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcH--H
Confidence 344554443433322 2344 5789999999997543211 123356788899888877666666666555 8
Q ss_pred HHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhc--c-chhhh-cc-------cHHHHHHHHHHHhhcCChHHHHHHHH
Q 015513 183 IGALMWVLQWENNDRHVAVKTSAMIVLKMVLELAS--K-GLLES-TL-------NLDFFKEMVKLLKENISQQATKSGLH 251 (405)
Q Consensus 183 i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~--~-~~~i~-~~-------~~g~i~~Lv~lL~~~~~~~~~~~a~~ 251 (405)
+..++..|.+ .++.++..+..+|..++..++ + -..+. .. +..-..++|+.|++..+.+.+.+++.
T Consensus 98 i~~l~~~L~s----~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~ 173 (233)
T 2f31_A 98 ILLLVRAMDP----AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQ 173 (233)
T ss_dssp HHHHHTTCCT----TSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHH
T ss_pred HHHHHHHhCC----CCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHH
Confidence 8888888887 889999999999998886554 2 22221 00 00023346666665435666666666
Q ss_pred HHHHhccCCc-------hhHHHHhhcchHHHHHH
Q 015513 252 VLLQACPMGG-------NRVKITEANAVFELIEL 278 (405)
Q Consensus 252 aL~~L~~~~~-------n~~~~v~~g~v~~Lv~l 278 (405)
.+-.+..+.+ -|..+...|..+.+-++
T Consensus 174 lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l 207 (233)
T 2f31_A 174 LINALITPAEELDFRVHIRSELMRLGLHQVLQEL 207 (233)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 6666665543 24455556666555443
No 174
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=90.43 E-value=12 Score=35.35 Aligned_cols=165 Identities=13% Similarity=0.054 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhhHHh-HHHHHHhchHHHHHHHHHhhccC-------CCchhHHHHHHHHHhcCCCchhhHHhhcccchh
Q 015513 110 STLKKMEALAMENERN-RKSLEEAFVVRALVLFIITSYKG-------NKTTGLEEALRILSLVWSPSNENKALVDHHNQD 181 (405)
Q Consensus 110 ~Al~~L~~l~~~~~~~-r~~i~~~g~v~~Lv~lL~~~~~~-------~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~ 181 (405)
+.+..|+...+.++.. -+.++ .+|+..|+.+|..-... .+...+..++.+|..+.........++....
T Consensus 86 ~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~-- 162 (383)
T 3eg5_B 86 SCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEE-- 162 (383)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSS--
T ss_pred HHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChH--
Confidence 4566666544444332 24454 78999999999643211 1123456788889888877666666666555
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhc--c-chhhh-cc-------cHHHHHHHHHHHhhcCChHHHHHHH
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELAS--K-GLLES-TL-------NLDFFKEMVKLLKENISQQATKSGL 250 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~--~-~~~i~-~~-------~~g~i~~Lv~lL~~~~~~~~~~~a~ 250 (405)
.+..++..|.+ .++.++..|..+|..++...+ + -..+. .. +..-...+|+.|++..+.+.+.+++
T Consensus 163 ~i~~l~~~L~s----~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m 238 (383)
T 3eg5_B 163 GILLLVRAMDP----AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCL 238 (383)
T ss_dssp HHHHHHHTCCT----TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHH
T ss_pred HHHHHHHHhCC----CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHH
Confidence 89999999887 889999999999998886553 2 12111 00 0011456777787654667777777
Q ss_pred HHHHHhccCCc-------hhHHHHhhcchHHHHHHhhcC
Q 015513 251 HVLLQACPMGG-------NRVKITEANAVFELIELELTK 282 (405)
Q Consensus 251 ~aL~~L~~~~~-------n~~~~v~~g~v~~Lv~lL~~~ 282 (405)
..+-.+....+ -|..+...|..+.+-. |+..
T Consensus 239 ~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~ 276 (383)
T 3eg5_B 239 QLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREI 276 (383)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcC
Confidence 77766666543 2455556777766655 5543
No 175
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=89.66 E-value=1.7 Score=46.94 Aligned_cols=150 Identities=9% Similarity=0.000 Sum_probs=84.6
Q ss_pred CcHHhHHHHHHHHHHHHhhhccc-hhhhcccHHHHHHHHHHHhhcC----ChHHHHHHHHHHHHhccCCchhHHHHhhcc
Q 015513 197 RHVAVKTSAMIVLKMVLELASKG-LLESTLNLDFFKEMVKLLKENI----SQQATKSGLHVLLQACPMGGNRVKITEANA 271 (405)
Q Consensus 197 ~~~~~~~~A~~~L~~L~~~~~~~-~~i~~~~~g~i~~Lv~lL~~~~----~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~ 271 (405)
.+...++.++++++.++...... ..-. -..+++.|+.++.... ...++..++++|...+..-.. ....
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~--l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~-----~~~~ 537 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRF--VVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA-----HWNF 537 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHH--HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH-----CHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHH--HHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc-----cHHH
Confidence 46888999999999998654322 1111 2467888888887421 222334555666555442111 1223
Q ss_pred hHHHHHHhhcC---CCCCcHHHHHHHHHHHhcCHhhHHHHHh-c----ccchHHHHHHHH----ccChhhhHHHHHHHHH
Q 015513 272 VFELIELELTK---PEKSTTELIFNLLAQLCSCADGRLKFRE-H----AGAIAMVTKRLL----RVSPATNDRAVHILSS 339 (405)
Q Consensus 272 v~~Lv~lL~~~---~~~~~~e~a~~~L~~L~~~~~~~~~i~~-~----~g~i~~Lv~~l~----~~s~~~~e~a~~~L~~ 339 (405)
+++++..|..+ +.+.+++.|+++|.+||.. .+..+.. . ..-++.+++.+. +...........++..
T Consensus 538 L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~ 615 (1023)
T 4hat_C 538 LRTVILKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI 615 (1023)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45555444431 1456999999999999852 2333321 0 012333333222 2345556677788888
Q ss_pred hcccCCCHHHHHHHHh
Q 015513 340 ISKFSATYEVVLEMLS 355 (405)
Q Consensus 340 L~~~~~~~~~~~~~~~ 355 (405)
+....++...+...++
T Consensus 616 vi~~~~~~~~~~~~l~ 631 (1023)
T 4hat_C 616 IISEERSVAERNRLLS 631 (1023)
T ss_dssp HHTTCCSHHHHHHHHH
T ss_pred HHHhCCCHhhHHHHHH
Confidence 8877666544554443
No 176
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=87.13 E-value=0.44 Score=47.22 Aligned_cols=155 Identities=12% Similarity=0.109 Sum_probs=103.2
Q ss_pred HHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHH
Q 015513 199 VAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIEL 278 (405)
Q Consensus 199 ~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~l 278 (405)
..+|+.|+.+|..+ ..-+.. ..++..|+..+..+ .++++..++-.|..+. +-... =.++++.++..
T Consensus 242 APVRETaAQtLGaL-~hLp~e-------~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~G 307 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP-------NDIIEQLVGFLDSG-DWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSL 307 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS-------CCHHHHHTTGGGCS-CHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHH
T ss_pred eehHHHHHHHHHHH-HhCChh-------HHHHHHHHhhcCCC-CeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhh
Confidence 56899999999998 543332 13455555555555 8999999999999991 11101 25788888888
Q ss_pred hhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHH----HccC--hhhhHHHHHHHHHhcccCCCHHHHHH
Q 015513 279 ELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRL----LRVS--PATNDRAVHILSSISKFSATYEVVLE 352 (405)
Q Consensus 279 L~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l----~~~s--~~~~e~a~~~L~~L~~~~~~~~~~~~ 352 (405)
|.+. +++++..|+.+|.-++ .+ ..++.++..+ .... +..+......|..|+......
T Consensus 308 L~D~-DDDVRAVAAetLiPIA-~p----------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a----- 370 (800)
T 3oc3_A 308 LSSP-DEDIKLLSAELLCHFP-IT----------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL----- 370 (800)
T ss_dssp TTCS-SHHHHHHHHHHHTTSC-CS----------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC-----
T ss_pred cCCc-ccHHHHHHHHHhhhhc-ch----------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc-----
Confidence 8885 8899999999998887 22 2344444433 2222 234555667777787765321
Q ss_pred HHhcChHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 015513 353 MLSVGAVSKLCMVTQADCEKYLKDRAKEILRLH 385 (405)
Q Consensus 353 ~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l 385 (405)
......+|.|..+|. +....+|..+..+|..+
T Consensus 371 ~~dp~LVPRL~PFLR-HtITSVR~AVL~TL~tf 402 (800)
T 3oc3_A 371 SIPPERLKDIFPCFT-SPVPEVRTSILNMVKNL 402 (800)
T ss_dssp CCCSGGGGGTGGGGT-CSSHHHHHHHHHHTTTC
T ss_pred ccChHHHHHHHhhhc-CCcHHHHHHHHHHHHHH
Confidence 112367899999998 67888898887766543
No 177
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=86.74 E-value=6.5 Score=38.14 Aligned_cols=73 Identities=14% Similarity=0.064 Sum_probs=57.1
Q ss_pred CcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHH
Q 015513 197 RHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELI 276 (405)
Q Consensus 197 ~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv 276 (405)
++...+.-|+..|...-..-.. ....+|..+++|+.+. +..+|..|.+.|..+|.. ++..++ +..|+
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~------l~~~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~ 106 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPE------LADSAINAQLDLCEDE-DVSIRRQAIKELPQFATG-ENLPRV-----ADILT 106 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGG------GHHHHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChh------hHHHHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHH
Confidence 6788899999988877543322 2357889999999988 889999999999999988 665444 46788
Q ss_pred HHhhcC
Q 015513 277 ELELTK 282 (405)
Q Consensus 277 ~lL~~~ 282 (405)
.+|.+.
T Consensus 107 QlLqtd 112 (507)
T 3u0r_A 107 QLLQTD 112 (507)
T ss_dssp HHTTCC
T ss_pred HHHhcc
Confidence 999864
No 178
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=86.09 E-value=0.13 Score=30.35 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=13.8
Q ss_pred cccCcCCcccCCCcccc
Q 015513 9 YFICPISLQIMKDPVTA 25 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv~~ 25 (405)
-|+||+|+.-+..|-.+
T Consensus 5 GFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 5 GFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEECTTTCCEESSHHHH
T ss_pred ccCCcHHHHHcCCHHHH
Confidence 49999999988887544
No 179
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=85.39 E-value=1.7 Score=31.52 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=35.4
Q ss_pred ccCcCCcccC-----CCcccc--CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIM-----KDPVTA--ITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 10 ~~Cpi~~~~m-----~dPv~~--~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
-+|.||++-. -+|.+. .|+-..||.|.+--.++ ++..||.|+..+..
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke-G~q~CpqCktrYkr 70 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE-GTQNCPQCKTRYKR 70 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT-SCSSCTTTCCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhc-cCccccccCCcccc
Confidence 4899999742 235555 48888999999876665 47899999988853
No 180
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=84.95 E-value=26 Score=33.02 Aligned_cols=163 Identities=12% Similarity=0.049 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhhHHh-HHHHHHhchHHHHHHHHHhhccCC-------CchhHHHHHHHHHhcCCCchhhHHhhcccchhH
Q 015513 111 TLKKMEALAMENERN-RKSLEEAFVVRALVLFIITSYKGN-------KTTGLEEALRILSLVWSPSNENKALVDHHNQDL 182 (405)
Q Consensus 111 Al~~L~~l~~~~~~~-r~~i~~~g~v~~Lv~lL~~~~~~~-------~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~ 182 (405)
-+..|+...+.++.. -+.+ ..+|+..|+.+|....... +...+..++.+|..+.........++.... +
T Consensus 25 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~--~ 101 (386)
T 2bnx_A 25 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEE--G 101 (386)
T ss_dssp HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSS--H
T ss_pred HHHHHhHHHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcH--H
Confidence 445555444433322 2334 3789999999986542211 123366788889888877666666666555 8
Q ss_pred HHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhc--c-chhhh-cc-------cHHHHHHHHHHHhhcCChHHHHHHHH
Q 015513 183 IGALMWVLQWENNDRHVAVKTSAMIVLKMVLELAS--K-GLLES-TL-------NLDFFKEMVKLLKENISQQATKSGLH 251 (405)
Q Consensus 183 i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~--~-~~~i~-~~-------~~g~i~~Lv~lL~~~~~~~~~~~a~~ 251 (405)
+..++..|.+ .++.++..+..+|..++...+ + -..+. .. +..-...||+.+++..+.+.+.+++.
T Consensus 102 i~~l~~sL~s----~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~ 177 (386)
T 2bnx_A 102 ILLLVRAMDP----AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQ 177 (386)
T ss_dssp HHHHHHTCCT----TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHH
T ss_pred HHHHHHHhCC----CCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHH
Confidence 8888888887 788899999999988886554 2 11111 00 00123457777775546677777777
Q ss_pred HHHHhccCCc-------hhHHHHhhcchHHHHHHhhc
Q 015513 252 VLLQACPMGG-------NRVKITEANAVFELIELELT 281 (405)
Q Consensus 252 aL~~L~~~~~-------n~~~~v~~g~v~~Lv~lL~~ 281 (405)
.+-.|..+.+ -|..+...|..+.|- -|+.
T Consensus 178 lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~-~Lr~ 213 (386)
T 2bnx_A 178 LINALITPAEELDFRVHIRSELMRLGLHQVLQ-ELRE 213 (386)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHH-HHTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCChHHHHH-HHhc
Confidence 7666666554 355666677766654 4444
No 181
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=84.33 E-value=49 Score=35.69 Aligned_cols=175 Identities=9% Similarity=-0.023 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhh----ccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELA----SKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQAC 257 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~----~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~ 257 (405)
.+..+..++.+...-.++..++.|..++..|.... .....-. -.-....|.+.+..+ +.+.+..++++|.|+-
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~--v~~i~~~l~~~~~~~-~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDEL--LQPLHDLLSQSSDRA-KEEEIVLALKALGNAG 468 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGG--THHHHHHHHHHHHTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHH--HHHHHHHHHHHHhcC-ChHHHHHHHHHhhccC
Confidence 45555566653100034556666777776665321 1111110 012333344444555 6778889999999987
Q ss_pred cCCchhHHHHhhcchHHHHHHhhcC----CC--CCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhH
Q 015513 258 PMGGNRVKITEANAVFELIELELTK----PE--KSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATND 331 (405)
Q Consensus 258 ~~~~n~~~~v~~g~v~~Lv~lL~~~----~~--~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e 331 (405)
.. ..++.|..++... .+ ..++-.|+.+|.+++... ... .-+.|.+ +........|
T Consensus 469 ~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--p~~------v~~il~~-i~~n~~e~~E 529 (1056)
T 1lsh_A 469 QP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--PRK------VQEIVLP-IFLNVAIKSE 529 (1056)
T ss_dssp CG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--HHH------HHHHHHH-HHHCTTSCHH
T ss_pred Ch----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc--hHH------HHHHHHH-HhcCCCCChH
Confidence 52 3567777776421 11 235566888888876321 111 1233445 3222334445
Q ss_pred HHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 332 RAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 332 ~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
.-+.|+..|-...++... +..+...+..+.+..++......|+.+.+
T Consensus 530 vRiaA~~~Lm~t~P~~~~---------l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 530 LRIRSCIVFFESKPSVAL---------VSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHHHHHHHHTCCCHHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCcCHHH---------HHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 445555555544454322 33333444444444444444444444443
No 182
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=83.62 E-value=33 Score=36.45 Aligned_cols=178 Identities=11% Similarity=0.066 Sum_probs=98.1
Q ss_pred CchhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhc---------cch
Q 015513 150 KTTGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELAS---------KGL 220 (405)
Q Consensus 150 ~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~---------~~~ 220 (405)
.+.++..|+++|..++..- .++.+ .. .++.++..|.+ .+..++..|+.+|.+++...+ .+.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~--~~~~l--~~--~l~~l~~~L~d----~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~ 540 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQL--TKAQL--IE--LMPILATFLQT----DEYVVYTYAAITIEKILTIRESNTSPAFIFHKE 540 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGS--CHHHH--HH--HHHHHHHHTTC----SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGG
T ss_pred CceehHHHHHHHHHHHhhC--CHHHH--HH--HHHHHHHHhCC----CChhHHHHHHHHHHHHHhcccccccccccccHH
Confidence 3456888999999886431 12222 12 67778888876 788999999999999987422 122
Q ss_pred hhhcccHHHHHHHHHHHhhcC----ChHHHHHHHHHHHHhccC-CchhHHHHhhcchHHHHHHhhc----CCCCCcHHHH
Q 015513 221 LESTLNLDFFKEMVKLLKENI----SQQATKSGLHVLLQACPM-GGNRVKITEANAVFELIELELT----KPEKSTTELI 291 (405)
Q Consensus 221 ~i~~~~~g~i~~Lv~lL~~~~----~~~~~~~a~~aL~~L~~~-~~n~~~~v~~g~v~~Lv~lL~~----~~~~~~~e~a 291 (405)
.+.-.-...++.|+.++.... .....+.+..+|..++.. .+.-...+. ..++.|+..+.. ..+......+
T Consensus 541 ~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~ 619 (960)
T 1wa5_C 541 DISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYT 619 (960)
T ss_dssp GTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 221012456777778877631 011345666777665441 121111221 255666665543 1133455567
Q ss_pred HHHHHHHhcC--HhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHHh
Q 015513 292 FNLLAQLCSC--ADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSSI 340 (405)
Q Consensus 292 ~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~L 340 (405)
+.+|..++.. ++....+. ...+|.+...+........+.+..++..+
T Consensus 620 ~e~l~~l~~~~~~~~~~~~~--~~~~p~~~~iL~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 620 FESIGAILNYTQRQNLPLLV--DSMMPTFLTVFSEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp HHHHHHHHHTSCGGGHHHHH--HHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHHH--HHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 7777777654 33344432 23566666644333334455555554443
No 183
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=83.18 E-value=2.7 Score=39.06 Aligned_cols=175 Identities=13% Similarity=0.102 Sum_probs=112.2
Q ss_pred HHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcCCCCCcH
Q 015513 209 LKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTKPEKSTT 288 (405)
Q Consensus 209 L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~ 288 (405)
|.+|..++++...-. ++.+++..+..++.-+ +.+..+++.+.|...+....-...= =...+|.++..+...++.++.
T Consensus 266 LL~LLmHdSnAIDGF-Vk~DGv~~I~TvinYp-N~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi~~~i~~h~eDdvv 342 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGF-VRSDGVGAITTVVQYP-NNDLIRAGCKLLLQVSDAKALAKTP-LENILPFLLRLIEIHPDDEVI 342 (619)
T ss_dssp HHHHHCCSHHHHHHH-HHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHhcccccccce-eecccceeEEEEeecC-CcHHHHhhhheeeeecchHHHhhcc-ccccchHHHHHhccCCCcceE
Confidence 556666666655444 5667777777777777 8899999999999988654322111 135788899988876677889
Q ss_pred HHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccCh-------hhhH-------HHHHHHHHhc-------ccC---
Q 015513 289 ELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSP-------ATND-------RAVHILSSIS-------KFS--- 344 (405)
Q Consensus 289 e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~-------~~~e-------~a~~~L~~L~-------~~~--- 344 (405)
-...+.|+|...+..--..+.-..|+|+.|-+.+.++.+ ..+. ++.+++.+.- ++.
T Consensus 343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~ 422 (619)
T 3c2g_A 343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKT 422 (619)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCC
T ss_pred EecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCcccc
Confidence 999999999998877655555557899999998877642 1122 2334444321 110
Q ss_pred -C--CHHHHHHHHhcChHHHHHHHHhccC--cHHHHHHHHHHHHHhh
Q 015513 345 -A--TYEVVLEMLSVGAVSKLCMVTQADC--EKYLKDRAKEILRLHS 386 (405)
Q Consensus 345 -~--~~~~~~~~~~~G~v~~Ll~ll~~~~--~~~~k~~A~~ll~~l~ 386 (405)
+ +...+...++-..+.+|+..|.-++ ....-|--..+||.+-
T Consensus 423 ~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~ 469 (619)
T 3c2g_A 423 AGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFI 469 (619)
T ss_dssp CCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHH
Confidence 1 1223334456667888888886554 3334455555666443
No 184
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=82.76 E-value=24 Score=32.48 Aligned_cols=185 Identities=11% Similarity=0.091 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHH--hchHHHHHHHHHhhccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhHH
Q 015513 106 HLRISTLKKMEALAMENERNRKSLEE--AFVVRALVLFIITSYKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDLI 183 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~~--~g~v~~Lv~lL~~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i 183 (405)
+.+..+.....++.+.....|...++ ..- |-++..|-..+...++ --.+-..|.....++. ..+.+...+ .+
T Consensus 93 E~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~di--Al~~G~mLRecir~e~-la~~iL~~~--~f 166 (341)
T 1upk_A 93 EGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEI--ALNCGIMLRECIRHEP-LAKIILWSE--QF 166 (341)
T ss_dssp HHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTT--HHHHHHHHHHHHTSHH-HHHHHHHSG--GG
T ss_pred hhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchh--HhHHHHHHHHHHHhHH-HHHHHhccH--HH
Confidence 66666666666666644433322221 011 3333444444443322 3444457777776653 444454555 56
Q ss_pred HHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhh--cccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 184 GALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLES--TLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 184 ~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~--~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
-.+...... ++-++...|..++..|-.....-..-. ..-..++...-.||.++ +--.++.+++.|..|-.+..
T Consensus 167 ~~fF~yv~~----~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkRQSlKLLgelLldr~ 241 (341)
T 1upk_A 167 YDFFRYVEM----STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKLLGELLLDRH 241 (341)
T ss_dssp GHHHHHTTC----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHhcC----CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHhCch
Confidence 677777776 899999999999998865432111111 01124566777888887 88999999999999999988
Q ss_pred hhHHHHh----hcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCH
Q 015513 262 NRVKITE----ANAVFELIELELTKPEKSTTELIFNLLAQLCSCA 302 (405)
Q Consensus 262 n~~~~v~----~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~ 302 (405)
|...|.. ..-+..+..+|++. ++.++-+|..+.-.-..++
T Consensus 242 N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 242 NFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp GHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCC
Confidence 8877765 35677788888875 7888888888887655443
No 185
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=82.73 E-value=16 Score=38.65 Aligned_cols=175 Identities=10% Similarity=0.034 Sum_probs=99.3
Q ss_pred CcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhc--CChHHHHHHHHHHHHhccCCchhHHHHhhcchHH
Q 015513 197 RHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKEN--ISQQATKSGLHVLLQACPMGGNRVKITEANAVFE 274 (405)
Q Consensus 197 ~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~--~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~ 274 (405)
.+...++.|+.++..++..-.... ...++.++..+..- .++.++..++++|..++..-....... ..+++.
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~~------~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~ 533 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVNY------SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPL 533 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSSC------CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCchh------hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHH
Confidence 567778889999998876532211 13344455544221 267889999999998886321112233 368888
Q ss_pred HHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhc-ccchHHHHHHHHc--cChhhhHHHHHHHHHhcccCCCHHHHH
Q 015513 275 LIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREH-AGAIAMVTKRLLR--VSPATNDRAVHILSSISKFSATYEVVL 351 (405)
Q Consensus 275 Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~-~g~i~~Lv~~l~~--~s~~~~e~a~~~L~~L~~~~~~~~~~~ 351 (405)
|+..|. ++.++..|+.+|..+|.. .+..+... ...+..|.+.+.. .....++....++..+....+ .+...
T Consensus 534 l~~~l~---~~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~~~~ 607 (963)
T 2x19_B 534 VLHALG---NPELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VEEIL 607 (963)
T ss_dssp HHHHTT---CGGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HHHHH
T ss_pred HHHHhC---CchHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HHHHH
Confidence 888874 368899999999999842 22222111 1122333332222 234567777888888876544 22333
Q ss_pred HHHhcChHHHHHHHHh----ccCcHHHHHHHHHHHHHh
Q 015513 352 EMLSVGAVSKLCMVTQ----ADCEKYLKDRAKEILRLH 385 (405)
Q Consensus 352 ~~~~~G~v~~Ll~ll~----~~~~~~~k~~A~~ll~~l 385 (405)
..++ ..++++...++ ...++..+.....++..+
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL 644 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 3332 34555555443 223555666555555444
No 186
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=82.34 E-value=26 Score=31.18 Aligned_cols=130 Identities=8% Similarity=0.017 Sum_probs=76.2
Q ss_pred ChHHHHHHHHHHHHhcc---CCchhHHHHh-hcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHH
Q 015513 242 SQQATKSGLHVLLQACP---MGGNRVKITE-ANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAM 317 (405)
Q Consensus 242 ~~~~~~~a~~aL~~L~~---~~~n~~~~v~-~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~ 317 (405)
+..+...++.+|..+.. ..+.+-.--+ .-.+|.|++-+.+. .+.+++.+-.+|..|+.. ..-....+.
T Consensus 100 N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v-------~~~~~v~~~ 171 (266)
T 2of3_A 100 NPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDV-------VGPLKMTPM 171 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHH-------HCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHH-------CCHHHHHHH
Confidence 66666677766666532 1111111111 23789999988664 456788888888776531 111112233
Q ss_pred HHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChH---HHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 015513 318 VTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAV---SKLCMVTQADCEKYLKDRAKEILRLHSN 387 (405)
Q Consensus 318 Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v---~~Ll~ll~~~~~~~~k~~A~~ll~~l~~ 387 (405)
+++-+...+...++.++..+..+-...+-. ...++ +.+..++. +.+..+|+.|...+.-+-+
T Consensus 172 l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-------~~~~l~~~~~ia~ll~-D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 172 LLDALKSKNARQRSECLLVIEYYITNAGIS-------PLKSLSVEKTVAPFVG-DKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-------GGGGGCHHHHHGGGGG-CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHhcCCC-------ccccccchHHHHHHHc-CCCHHHHHHHHHHHHHHHH
Confidence 444333345677777777777766544432 24567 88888887 6788899998876664443
No 187
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=82.11 E-value=18 Score=33.73 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=90.5
Q ss_pred HHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHH
Q 015513 155 EEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMV 234 (405)
Q Consensus 155 e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv 234 (405)
..+..+|..|..++ ..-+-.++.+ ++..+..+..- .+.+.......+|...+...+-...- . .+.+|-++
T Consensus 261 tR~FDLL~LLmHdS-nAIDGFVk~D--Gv~~I~TvinY----pN~~l~RaG~KLLLQVSDaksL~~t~--L-~e~LPFi~ 330 (619)
T 3c2g_A 261 IRTFDLLGLLLHDS-DAIDGFVRSD--GVGAITTVVQY----PNNDLIRAGCKLLLQVSDAKALAKTP--L-ENILPFLL 330 (619)
T ss_dssp HHHHHHHHHHCCSH-HHHHHHHHTT--HHHHHHHHTTS----SCHHHHHHHHHHHHHHTTCGGGGTSC--C-TTHHHHHH
T ss_pred HHHHHHHHHHhccc-ccccceeecc--cceeEEEEeec----CCcHHHHhhhheeeeecchHHHhhcc--c-cccchHHH
Confidence 34445555555444 3344445555 67777777775 78888888889998887655433322 2 36778888
Q ss_pred HHHhhcCChHHHHHHHHHHHHhccCCc-hhHHHHhhcchHHHHHHhhcCC------CCCcHHHHHHHHHH
Q 015513 235 KLLKENISQQATKSGLHVLLQACPMGG-NRVKITEANAVFELIELELTKP------EKSTTELIFNLLAQ 297 (405)
Q Consensus 235 ~lL~~~~~~~~~~~a~~aL~~L~~~~~-n~~~~v~~g~v~~Lv~lL~~~~------~~~~~e~a~~~L~~ 297 (405)
..+....+.++.-.+...|.|...+.. -+...+..|+|+.|-..+..-+ +..-+..|++++.|
T Consensus 331 ~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 331 RLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred HHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 888765578999999999999999875 5555678999999998875421 22345566666665
No 188
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=82.02 E-value=25 Score=30.52 Aligned_cols=148 Identities=10% Similarity=0.067 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhhc----------CChHHHHHHHHHHHHhccCCchhHHHHh-hcchHHHHHHhhcCCCCCcHHHHHHHH
Q 015513 227 LDFFKEMVKLLKEN----------ISQQATKSGLHVLLQACPMGGNRVKITE-ANAVFELIELELTKPEKSTTELIFNLL 295 (405)
Q Consensus 227 ~g~i~~Lv~lL~~~----------~~~~~~~~a~~aL~~L~~~~~n~~~~v~-~g~v~~Lv~lL~~~~~~~~~e~a~~~L 295 (405)
.+|+..|+++|..- .+.......+++|..+.-+......+++ .+++..|+..|.+. ...++..++.+|
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~r~~~leLL 120 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTT-SHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCC-CchHHHHHHHHH
Confidence 46778888877541 1234567888999999887766666655 67888888888664 667888999999
Q ss_pred HHHhcCHh--h-HHHHHhc---------ccchHHHHHHHHccC-hhhhHHHHHHHHHhcccCCCH----HHHHHHHhcCh
Q 015513 296 AQLCSCAD--G-RLKFREH---------AGAIAMVTKRLLRVS-PATNDRAVHILSSISKFSATY----EVVLEMLSVGA 358 (405)
Q Consensus 296 ~~L~~~~~--~-~~~i~~~---------~g~i~~Lv~~l~~~s-~~~~e~a~~~L~~L~~~~~~~----~~~~~~~~~G~ 358 (405)
..+|..++ | ...++.. ..-...+|+.+...+ ..-+-.+...+..|.+..++- ..+.++...|.
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 200 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 200 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 99997654 6 5555431 112334555322111 122334556666677766543 45556666664
Q ss_pred HHHHHHHHhccCcHHHHH
Q 015513 359 VSKLCMVTQADCEKYLKD 376 (405)
Q Consensus 359 v~~Ll~ll~~~~~~~~k~ 376 (405)
..++.-|+...++....
T Consensus 201 -~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 201 -HQVLQELREIENEDMKV 217 (233)
T ss_dssp -HHHHHHHHHCCCHHHHH
T ss_pred -HHHHHHHhccCCHHHHH
Confidence 55556665444555443
No 189
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=80.82 E-value=8.3 Score=31.65 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP 258 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~ 258 (405)
++..|.+-|.+ +++..+..|..+|..+..+.......-+.+..++..|++++....++.+++.++..|..-+.
T Consensus 53 A~ral~krl~~----~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNH----KVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 66677777777 78899999999998888764433321114678999999999865578999999988876654
No 190
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=80.63 E-value=8.8 Score=41.37 Aligned_cols=153 Identities=8% Similarity=0.090 Sum_probs=83.2
Q ss_pred chHHHHHHHHHhhccC--CCchhHHHHHHHHHhcCCCchh--hHHhhcccchhHHHHHHHHHhhhcCCCcHH--hHHHHH
Q 015513 133 FVVRALVLFIITSYKG--NKTTGLEEALRILSLVWSPSNE--NKALVDHHNQDLIGALMWVLQWENNDRHVA--VKTSAM 206 (405)
Q Consensus 133 g~v~~Lv~lL~~~~~~--~~~~~~e~A~~~L~~L~~~~~~--~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~--~~~~A~ 206 (405)
..++.+...|...... .+-..+|.+++++..++..-.+ .+..+. .+++.|+.++.... +.+.. ++..++
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~----~vi~~Ll~l~~~~~-~~d~k~~v~~t~~ 521 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV----TVIKDLLDLCVKKR-GKDNKAVVASDIM 521 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH----HHHHHHHHHHHHCC-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH----HHHHHHHHhhhccc-cCcchHHHHHHHH
Confidence 3455555655432211 1224589999999999865432 233332 27888888776311 11223 334566
Q ss_pred HHHHHHHhhhccchhhhcccHHHHHHHHHH----HhhcCChHHHHHHHHHHHHhccCCchhHHHHh------hcchHHHH
Q 015513 207 IVLKMVLELASKGLLESTLNLDFFKEMVKL----LKENISQQATKSGLHVLLQACPMGGNRVKITE------ANAVFELI 276 (405)
Q Consensus 207 ~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~l----L~~~~~~~~~~~a~~aL~~L~~~~~n~~~~v~------~g~v~~Lv 276 (405)
++|+..+.--. .....+++++.. +.+. ++.+..+|++++.+||. +.+..++. ...++.++
T Consensus 522 ~~lGry~~wl~-------~~~~~L~~vl~~L~~~l~~~-~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il 591 (1023)
T 4hat_C 522 YVVGQYPRFLK-------AHWNFLRTVILKLFEFMHET-HEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTII 591 (1023)
T ss_dssp HHHHTCHHHHH-------HCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHH
T ss_pred HHHHHHHHHHh-------ccHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHH
Confidence 77776554221 123444554444 4333 57899999999999997 34444542 12455555
Q ss_pred HHhhc---CCCCCcHHHHHHHHHHHhc
Q 015513 277 ELELT---KPEKSTTELIFNLLAQLCS 300 (405)
Q Consensus 277 ~lL~~---~~~~~~~e~a~~~L~~L~~ 300 (405)
..+.. .-+......+..+++.+..
T Consensus 592 ~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 592 RDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 43332 1133344556666666654
No 191
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=80.08 E-value=17 Score=38.66 Aligned_cols=174 Identities=16% Similarity=0.103 Sum_probs=92.8
Q ss_pred cHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHH---h-hcCChHHHHHHHHHHHHhccC-CchhHHHHhhcch
Q 015513 198 HVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLL---K-ENISQQATKSGLHVLLQACPM-GGNRVKITEANAV 272 (405)
Q Consensus 198 ~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL---~-~~~~~~~~~~a~~aL~~L~~~-~~n~~~~v~~g~v 272 (405)
+...++.|+.++..++..-.... ...++.++.++ . +..++.++..++++|..++.. .++. ... ..++
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~------~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l-~~vl 548 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE------KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYI-PPAI 548 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC------------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh------hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHH-HHHH
Confidence 45577888888888865432211 12334444443 2 112788999999999998863 2222 111 2366
Q ss_pred HHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhc-ccchHHHHHHHHc--cChhhhHHHHHHHHHhcccCCCHHH
Q 015513 273 FELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREH-AGAIAMVTKRLLR--VSPATNDRAVHILSSISKFSATYEV 349 (405)
Q Consensus 273 ~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~-~g~i~~Lv~~l~~--~s~~~~e~a~~~L~~L~~~~~~~~~ 349 (405)
+.|+..|. ..++..|+.+|..+|. +.+..+... ...+..|.+.+.+ .....++....++..++...+.+ .
T Consensus 549 ~~l~~~l~----~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~-~ 621 (971)
T 2x1g_F 549 NLLVRGLN----SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPE-E 621 (971)
T ss_dssp HHHHHHHH----SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTT-H
T ss_pred HHHHHHhC----hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHH-H
Confidence 66777662 5789999999999994 233333221 1233444443333 23566777888888877643322 2
Q ss_pred HHHHHhcChHHHHHHHH----hccC-cHHHHHHHHHHHHHhhc
Q 015513 350 VLEMLSVGAVSKLCMVT----QADC-EKYLKDRAKEILRLHSN 387 (405)
Q Consensus 350 ~~~~~~~G~v~~Ll~ll----~~~~-~~~~k~~A~~ll~~l~~ 387 (405)
....++ ..+++++..+ +... ++..+......+..+..
T Consensus 622 ~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 663 (971)
T 2x1g_F 622 IPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST 663 (971)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 222222 2344444433 3222 34445556666655554
No 192
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=78.75 E-value=0.57 Score=26.28 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=13.7
Q ss_pred CCcccCcCCcccCCCccc
Q 015513 7 PQYFICPISLQIMKDPVT 24 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~ 24 (405)
|..|.||+|+..|-|+=+
T Consensus 1 ~~k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CCCEECTTSSCEESSHHH
T ss_pred CCcccCccccccCcChHH
Confidence 457889999988877744
No 193
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=78.56 E-value=21 Score=33.67 Aligned_cols=141 Identities=11% Similarity=0.058 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhhc-CC------CcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 015513 182 LIGALMWVLQWEN-ND------RHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLL 254 (405)
Q Consensus 182 ~i~~Lv~lL~~~~-~~------~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~ 254 (405)
|+..|+.+|.... ++ .+...+..++.+|+.|.....+...+. ...+++..|+..|.+. ++.++..++..|.
T Consensus 48 Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl-~~~~~i~~l~~sL~s~-~~~~r~~vleLL~ 125 (386)
T 2bnx_A 48 GLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTML-ETEEGILLLVRAMDPA-VPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHH-HSSSHHHHHHHTCCTT-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHH-cCcHHHHHHHHHhCCC-CchHHHHHHHHHH
Confidence 6777777775321 00 134567888888988876665555454 4567788888888776 8899999999999
Q ss_pred HhccCCc--h-hHHHHh----------hcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHh---hHHHHHh--cccchH
Q 015513 255 QACPMGG--N-RVKITE----------ANAVFELIELELTKPEKSTTELIFNLLAQLCSCAD---GRLKFRE--HAGAIA 316 (405)
Q Consensus 255 ~L~~~~~--n-~~~~v~----------~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~---~~~~i~~--~~g~i~ 316 (405)
.+|..++ + ...+.+ ..-+.+||+.+..+.+.+.+-.++..+-.|..+++ .|..+.. ...|+.
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 9998654 4 333332 24667788888653233344444444444554433 3333321 124677
Q ss_pred HHHHHHHc
Q 015513 317 MVTKRLLR 324 (405)
Q Consensus 317 ~Lv~~l~~ 324 (405)
.+++.+..
T Consensus 206 ~il~~Lr~ 213 (386)
T 2bnx_A 206 QVLQELRE 213 (386)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 77665544
No 194
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=77.83 E-value=12 Score=29.88 Aligned_cols=72 Identities=13% Similarity=0.152 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP 258 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~ 258 (405)
++..+.+-|.+ +++..+..|..+|..+..+.......-+.+..++..|+++++.. ++.+++..+..+...+.
T Consensus 43 a~rai~Krl~~----~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~-~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNH----KDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKG-HPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 67777777887 88899999999888887765443321114678999999999765 88999999998877654
No 195
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=77.70 E-value=9.2 Score=33.22 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP 258 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~ 258 (405)
++..|.+-|.+ +++.++..|+.+|..+..+-......-+.+..++..|+++++...++.+++.++..|...+.
T Consensus 46 a~ral~krl~~----~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVND----KNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 67777788887 89999999999999988776543221114678999999999876678999999999887764
No 196
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=76.63 E-value=8.5 Score=31.59 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=59.3
Q ss_pred chHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccCCCC
Q 015513 314 AIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWNNSP 393 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~ 393 (405)
++..|.+.|....+..+-.|+.+|-.+.++++. ....++.....+..|+.++.....+.+|+++..+++.-.....+.|
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~-~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 131 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGK-IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDP 131 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH-HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH-HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 455666666655667777888888888888774 4666777777888888888754678999999999887777666555
No 197
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=76.62 E-value=70 Score=34.17 Aligned_cols=223 Identities=9% Similarity=0.019 Sum_probs=117.2
Q ss_pred hhHHHHHHHHHhcCCCchhhHHhhc----ccchhHHHHHHHHHhhhc-CCCcHHhHHHHHHHHHHHHhhhccchhhhccc
Q 015513 152 TGLEEALRILSLVWSPSNENKALVD----HHNQDLIGALMWVLQWEN-NDRHVAVKTSAMIVLKMVLELASKGLLESTLN 226 (405)
Q Consensus 152 ~~~e~A~~~L~~L~~~~~~~~~~i~----~~g~~~i~~Lv~lL~~~~-~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~ 226 (405)
+.+|.|+.+|..++..-......+. ... ..++.++.++.+.- +...+.++..+++++...+.--.. .
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp-~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~-------~ 529 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPT-VLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY-------E 529 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBC-HHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT-------C
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhH-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc-------C
Confidence 4589999999998764322111110 011 14555556655210 015678888999998887654321 1
Q ss_pred HHHHHHHHHHHhh--c---CChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhc----CCC----CC-------
Q 015513 227 LDFFKEMVKLLKE--N---ISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELT----KPE----KS------- 286 (405)
Q Consensus 227 ~g~i~~Lv~lL~~--~---~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~----~~~----~~------- 286 (405)
...+++++..+-+ + .++.++..|..++.++|..-. ..+ .+.++.++..+.. ... .+
T Consensus 530 ~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~--~~L--~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~ 605 (980)
T 3ibv_A 530 SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK--KQV--VNYTESSLAMLGDLLNISVSPVTDMDAPVPTLN 605 (980)
T ss_dssp CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT--TTC--SSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHH
T ss_pred chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh--HHh--hhHHHHHHHHHHHhhcCcCCCCCcccccccchh
Confidence 2334555554433 2 267899999999999997432 233 2455666665532 100 00
Q ss_pred ---------cHHHHHHHHHHHh---c-CHhhHHHHHhcccchHHHHHHHHcc----Chh-----hhHHHHHHHHHhcccC
Q 015513 287 ---------TTELIFNLLAQLC---S-CADGRLKFREHAGAIAMVTKRLLRV----SPA-----TNDRAVHILSSISKFS 344 (405)
Q Consensus 287 ---------~~e~a~~~L~~L~---~-~~~~~~~i~~~~g~i~~Lv~~l~~~----s~~-----~~e~a~~~L~~L~~~~ 344 (405)
-+-....+++.|. . ..+.+...+. ..++++++.+... ... .....+.++..+++.-
T Consensus 606 ~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~--~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf 683 (980)
T 3ibv_A 606 SSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD--SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGF 683 (980)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH--HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTS
T ss_pred hhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccC
Confidence 0111333333333 3 2445555443 3567776654322 111 1123455566677653
Q ss_pred CCH-----HHHHHHHhcChHHHHHHHHhc-cCcHHHHHHHHHHHHHhhcccC
Q 015513 345 ATY-----EVVLEMLSVGAVSKLCMVTQA-DCEKYLKDRAKEILRLHSNVWN 390 (405)
Q Consensus 345 ~~~-----~~~~~~~~~G~v~~Ll~ll~~-~~~~~~k~~A~~ll~~l~~~~~ 390 (405)
++. .....+. .+.+.++..|.. ..+..+|++++..++.+-...+
T Consensus 684 ~~~~~~~~p~~~~f~--~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg 733 (980)
T 3ibv_A 684 PARGSEEVAWLASFN--KASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVG 733 (980)
T ss_dssp CSCC-CCCSHHHHHH--HHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTH
T ss_pred CcccCCCCcHHHHHH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc
Confidence 321 0122222 245556566654 3478899999999987776543
No 198
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=75.42 E-value=14 Score=29.81 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhh-----cCChHHHHHHHHHHHHh
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKE-----NISQQATKSGLHVLLQA 256 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~-----~~~~~~~~~a~~aL~~L 256 (405)
++..|.+-|.+ .++..+..|..+|..+..+.......-+.+..++..|++++.. ..+..+++..+..|..-
T Consensus 49 a~ral~krl~~----~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 49 ATRLLAHKIQS----PQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 67777777877 8999999999999998876654332211477899999999974 24678999999998777
Q ss_pred cc
Q 015513 257 CP 258 (405)
Q Consensus 257 ~~ 258 (405)
+.
T Consensus 125 ~~ 126 (149)
T 3g2s_A 125 TV 126 (149)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 199
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=74.59 E-value=2.9 Score=30.94 Aligned_cols=49 Identities=16% Similarity=0.381 Sum_probs=36.6
Q ss_pred CCcccCcCCcccCCCccccC-CC-----CcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDPVTAI-TG-----ISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~-~g-----~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
++.+.||||+++-..=|-+. .+ .-|++.++.+...++ . .=|.+|++++.
T Consensus 25 ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~-~-~HPLSREpit~ 79 (102)
T 2kkx_A 25 LEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEG-L-PHPLTREPITA 79 (102)
T ss_dssp TGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHT-C-CCTTTCCCCCT
T ss_pred HHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcC-C-CCCCccCCCCH
Confidence 45589999999888877552 11 249999999998875 3 34999998865
No 200
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=73.77 E-value=60 Score=30.48 Aligned_cols=140 Identities=11% Similarity=0.076 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhh----c------CChHHHHHHHHHHHHhccCCchhHHHHh-hcchHHHHHHhhcCCCCCcHHHHHHHH
Q 015513 227 LDFFKEMVKLLKE----N------ISQQATKSGLHVLLQACPMGGNRVKITE-ANAVFELIELELTKPEKSTTELIFNLL 295 (405)
Q Consensus 227 ~g~i~~Lv~lL~~----~------~~~~~~~~a~~aL~~L~~~~~n~~~~v~-~g~v~~Lv~lL~~~~~~~~~e~a~~~L 295 (405)
.+|+..|+++|.. + .+.......+++|..+.-+......+++ ...|..|+..|.+. ...++..++.+|
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~~~~aleLL 186 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLL 186 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTT-SHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 4667888887752 1 1335667788999999887766666654 67889899888764 667888999999
Q ss_pred HHHhcCHh---hHHHHHhc---------ccchHHHHHHHHcc-ChhhhHHHHHHHHHhcccCCCH----HHHHHHHhcCh
Q 015513 296 AQLCSCAD---GRLKFREH---------AGAIAMVTKRLLRV-SPATNDRAVHILSSISKFSATY----EVVLEMLSVGA 358 (405)
Q Consensus 296 ~~L~~~~~---~~~~i~~~---------~g~i~~Lv~~l~~~-s~~~~e~a~~~L~~L~~~~~~~----~~~~~~~~~G~ 358 (405)
..+|..++ |...++.. ..-...+|+.+... ...-.-.+...+..+.+..++- ..+.++...|.
T Consensus 187 ~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 266 (383)
T 3eg5_B 187 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 266 (383)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCh
Confidence 99997654 35555431 12244555533221 1123344556666777766543 34555667775
Q ss_pred HHHHHHHHhc
Q 015513 359 VSKLCMVTQA 368 (405)
Q Consensus 359 v~~Ll~ll~~ 368 (405)
.+ ++.-|+.
T Consensus 267 ~~-il~~lr~ 275 (383)
T 3eg5_B 267 HQ-VLQELRE 275 (383)
T ss_dssp HH-HHHHHTT
T ss_pred HH-HHHHHhc
Confidence 44 4444553
No 201
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=71.31 E-value=7.2 Score=33.93 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=58.6
Q ss_pred chHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccCCCC
Q 015513 314 AIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWNNSP 393 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~ 393 (405)
++..|.+.|...++..+-.|+.+|-.+.++++. ....++.....+..|..++.......+|+++..+++.-.....+.|
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~-~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 124 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQ-TVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEP 124 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCH-HHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcch-HHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 455666666655667788888888888887764 3666666667777788888766678899999999988777665554
No 202
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=71.11 E-value=19 Score=29.74 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccch--hhhcccHHHHHHHHHHHhh-----cCChHHHHHHHHHHH
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGL--LESTLNLDFFKEMVKLLKE-----NISQQATKSGLHVLL 254 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~--~i~~~~~g~i~~Lv~lL~~-----~~~~~~~~~a~~aL~ 254 (405)
++..|.+-|.+ +++.++..|..+|..+..+..... .+ .+..++..|++++.. ..+..+++.++..|.
T Consensus 51 A~ral~krl~~----~n~~vql~AL~LLd~~vkNCG~~Fh~ev--as~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 124 (171)
T 1juq_A 51 AVRLLAHKIQS----PQEWEALQALTVLEACMKNCGRRFHNEV--GKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLY 124 (171)
T ss_dssp HHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHSHHHHHHHH--TSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHcCHHHHHHH--hhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 67777777887 899999999999999987743322 33 477999999999973 236789999999987
Q ss_pred Hhcc
Q 015513 255 QACP 258 (405)
Q Consensus 255 ~L~~ 258 (405)
.-+.
T Consensus 125 ~W~~ 128 (171)
T 1juq_A 125 SWTM 128 (171)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 203
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=71.09 E-value=1.6 Score=32.05 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=34.3
Q ss_pred ccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
+-|--|=...+.- +-.+.|-+|+.|+...+.. ...||+|++++..
T Consensus 29 ~nCKsCWf~~k~L-V~C~dHYLCl~CLtlmL~~--SdrCpIC~~pLPt 73 (99)
T 2ko5_A 29 QFCKSCWFENKGL-VECNNHYLCLNCLTLLLSV--SNRCPICKMPLPT 73 (99)
T ss_dssp CCCCSSCSCCSSE-EECSSCEEEHHHHHHTCSS--SSEETTTTEECCC
T ss_pred ccChhhccccCCe-eeecchhhHHHHHHHHHhh--ccCCcccCCcCCc
Confidence 5788886655533 4466799999999998854 5789999999864
No 204
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=70.94 E-value=17 Score=31.34 Aligned_cols=71 Identities=7% Similarity=0.055 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccch--hhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGL--LESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP 258 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~--~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~ 258 (405)
++..|.+-|.+ +++.++..|..+|..+..+-.... .+ .+..++..|++++.+..+..+++.++..+..-+.
T Consensus 43 a~r~l~krl~~----~n~~~~l~aL~Lle~~vkNcG~~f~~ev--a~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNS----PNPHSSCYSLLVLESIVKNCGAPVHEEV--FTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHSHHHHHHHH--SSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CCHHHHHHHHHHHHHHHhccCHHHHHHH--HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 67777777887 889999999999999887654322 33 4678999999999876578888888888766653
No 205
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=70.42 E-value=15 Score=29.47 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHh
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKEN-----ISQQATKSGLHVLLQA 256 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~-----~~~~~~~~a~~aL~~L 256 (405)
++..+.+-|.+ +++..+..|..+|..+..+.......-+.+..++..|++++... .+..+++.++..|..-
T Consensus 39 a~rai~krl~~----~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 39 APWLLAHKIQS----PQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 67777777887 89999999999999998775433322114679999999999741 3678999999988776
Q ss_pred cc
Q 015513 257 CP 258 (405)
Q Consensus 257 ~~ 258 (405)
+.
T Consensus 115 ~~ 116 (148)
T 1mhq_A 115 TV 116 (148)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 206
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=68.78 E-value=8.6 Score=33.21 Aligned_cols=79 Identities=15% Similarity=0.226 Sum_probs=57.1
Q ss_pred chHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccCCCC
Q 015513 314 AIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWNNSP 393 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~ 393 (405)
++..|.+.|....+..+-.|+.+|-.+.++++. ....++.+...+..|..++.......+|+++.++++.-.....+.|
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~-~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 121 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA-PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSD 121 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH-HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCH-HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccch
Confidence 445566656555667777888888888887664 3556666666788888888766678899999999887777665554
No 207
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=65.92 E-value=82 Score=28.96 Aligned_cols=208 Identities=12% Similarity=0.059 Sum_probs=135.4
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccch-hhh---cccHHHHHHHHHHHhhc-CChHHHHHHHHHHHHh
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGL-LES---TLNLDFFKEMVKLLKEN-ISQQATKSGLHVLLQA 256 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~-~i~---~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~L 256 (405)
.+..|+..|.. -+.+.+..++.+..++.....+.. ..+ ... +.++..|-.+ .+++..-.+-..|+..
T Consensus 79 ll~~Li~~l~~----L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~----peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 79 LLSTLVADLQL----IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ----QNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHHHTGGG----SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC----THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHHHHhccc----CCchhhccHHHHHHHHHhcccCCCCchhHHHHcC----HHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 78888888887 889999999999888875443211 111 011 2233333333 2455666666777777
Q ss_pred ccCCchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhc-CHhhHHHHHhc--ccchHHHHHHHHccChhhhHHH
Q 015513 257 CPMGGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCS-CADGRLKFREH--AGAIAMVTKRLLRVSPATNDRA 333 (405)
Q Consensus 257 ~~~~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~-~~~~~~~i~~~--~g~i~~Lv~~l~~~s~~~~e~a 333 (405)
..++.-.+.+...+.+-.+.+.+..+ .=++...|..++..|-. +..--..++.. ...+...-++|...+...+..+
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 77777777788888888888877654 44677888888887654 23222233221 1223333442223345778889
Q ss_pred HHHHHHhcccCCCHHHHHHHHhcC-hHHHHHHHHhccCcHHHHHHHHHHHHHhhcccCCCCCcchhh
Q 015513 334 VHILSSISKFSATYEVVLEMLSVG-AVSKLCMVTQADCEKYLKDRAKEILRLHSNVWNNSPCIQVYL 399 (405)
Q Consensus 334 ~~~L~~L~~~~~~~~~~~~~~~~G-~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~~~~~~~ 399 (405)
+..|..|-....+..+...-+..+ -+..++.+|+ +.+..+|-.|--+.+++..+.+.++.+..-|
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~-d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL 295 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLR-DKSRNIQFEAFHVFKVFVANPNKTQPILDIL 295 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHCSSCCHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhc-CchhchhhhhhhheeeeeeCCCCChHHHHHH
Confidence 999998876655555566656555 4566666666 6799999999999999998877776665533
No 208
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=65.19 E-value=2 Score=27.18 Aligned_cols=13 Identities=23% Similarity=0.721 Sum_probs=11.1
Q ss_pred CCCCcccCcCCcc
Q 015513 5 EVPQYFICPISLQ 17 (405)
Q Consensus 5 ~~~~~~~Cpi~~~ 17 (405)
++|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 5789999999985
No 209
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=65.00 E-value=15 Score=29.58 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=59.2
Q ss_pred chHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhc-----cCcHHHHHHHHHHHHHhhcc
Q 015513 314 AIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQA-----DCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~-----~~~~~~k~~A~~ll~~l~~~ 388 (405)
++..|.+.|....+..+-.|+.+|-.+.++++. ....++.....+..|+.++.. .....+|++...+++.-...
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~-~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK-RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCH-HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCH-HHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 566777777666677888899999998888875 366777777788888888852 34678999999998877776
Q ss_pred cCCC
Q 015513 389 WNNS 392 (405)
Q Consensus 389 ~~~~ 392 (405)
..+.
T Consensus 128 f~~~ 131 (149)
T 3g2s_A 128 LPEE 131 (149)
T ss_dssp CTTC
T ss_pred hCCC
Confidence 5544
No 210
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=64.71 E-value=40 Score=36.19 Aligned_cols=144 Identities=8% Similarity=0.049 Sum_probs=72.8
Q ss_pred CcHHhHHHHHHHHHHHHhhhccc-hhhhcccHHHHHHHHHHHhhc----CChHHHHHHHHHHHHhccCCchhHHHHhhcc
Q 015513 197 RHVAVKTSAMIVLKMVLELASKG-LLESTLNLDFFKEMVKLLKEN----ISQQATKSGLHVLLQACPMGGNRVKITEANA 271 (405)
Q Consensus 197 ~~~~~~~~A~~~L~~L~~~~~~~-~~i~~~~~g~i~~Lv~lL~~~----~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~ 271 (405)
.+...++.|+.++..++..-... .... -...++.|+.+.... ..+.++..+++++...+..-....... ..+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~--l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l-~~v 541 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRF--VVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTV 541 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHH--HHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHH--HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH-HHH
Confidence 45677888999998886432111 0000 113334444433211 022233346667666654221222222 236
Q ss_pred hHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHH-hcc----cchHHHHHHH----HccChhhhHHHHHHHHHhcc
Q 015513 272 VFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFR-EHA----GAIAMVTKRL----LRVSPATNDRAVHILSSISK 342 (405)
Q Consensus 272 v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~-~~~----g~i~~Lv~~l----~~~s~~~~e~a~~~L~~L~~ 342 (405)
++.|++.+.+. +..++..|+.+|.++|.. .+..+. ... .-++.+++.+ .............++..+..
T Consensus 542 l~~ll~~l~~~-~~~V~~~A~~al~~l~~~--~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 542 ILKLFEFMHET-HEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHHHTTSS-CHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHHH--HHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 67777777653 678999999999999963 223332 000 1233333322 22233444555566666665
Q ss_pred cCCC
Q 015513 343 FSAT 346 (405)
Q Consensus 343 ~~~~ 346 (405)
..++
T Consensus 619 ~~~~ 622 (1049)
T 3m1i_C 619 EERS 622 (1049)
T ss_dssp TCCS
T ss_pred cCCC
Confidence 5443
No 211
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=64.12 E-value=79 Score=33.88 Aligned_cols=99 Identities=9% Similarity=0.088 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHhcCCCchhh--HHhhcccchhHHHHHHHHHhhhcCC--CcHHhHHHHHHHHHHHHhhhccchhhhcccH
Q 015513 152 TGLEEALRILSLVWSPSNEN--KALVDHHNQDLIGALMWVLQWENND--RHVAVKTSAMIVLKMVLELASKGLLESTLNL 227 (405)
Q Consensus 152 ~~~e~A~~~L~~L~~~~~~~--~~~i~~~g~~~i~~Lv~lL~~~~~~--~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~ 227 (405)
..+|.|+.++..++..-... +..+. ..++.|+.+... .++ ..+-.+..+++++...+..-....... .
T Consensus 468 ~~~eaal~algsia~~~~~~~e~~~l~----~v~~~l~~l~~~-~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l---~ 539 (1049)
T 3m1i_C 468 HNINTLSWAIGSISGTMSEDTEKRFVV----TVIKDLLDLTVK-KRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL---R 539 (1049)
T ss_dssp HHHHHHHHHHHHTTTSSCHHHHHHHHH----HHHHHHHHHTTS-SCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH---H
T ss_pred HHHHHHHHHHHHHhcccCchhhHHHHH----HHHHHHHHHHhh-hccccchHHHHHHHHHHHHHHHHHHHhHHHHH---H
Confidence 45889999999887532111 11111 134444443221 000 122333457788877654321112222 3
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhccC
Q 015513 228 DFFKEMVKLLKENISQQATKSGLHVLLQACPM 259 (405)
Q Consensus 228 g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~ 259 (405)
.+++.|++.+.+. ++.++..|+.++.+++..
T Consensus 540 ~vl~~ll~~l~~~-~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 540 TVILKLFEFMHET-HEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 5677777777776 789999999999999973
No 212
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=63.53 E-value=5.1 Score=29.93 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=26.5
Q ss_pred CcccCcCCcccCCCccccCCCCcccHHHHHHHHhcC
Q 015513 8 QYFICPISLQIMKDPVTAITGISYDRESIEKWLKTA 43 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~ 43 (405)
..+.||+|++.+...-+.+. ..-|..|++|..++
T Consensus 62 ~~~~cP~~~~~l~~~~L~pn--~~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 62 NSPTDPFNRQTLTESMLEPV--PELKEQIQAWMREK 95 (100)
T ss_dssp SCSBCSSSCCBCCTTSSEEC--HHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCCCChhhceEC--HHHHHHHHHHHHHh
Confidence 35789999999988766553 34599999998765
No 213
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=63.37 E-value=0.25 Score=36.40 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=26.2
Q ss_pred ccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
..||.|++.|. + ..|+.+|..|=..+.. ...||.|++++.
T Consensus 33 ~~CP~Cq~eL~-~---~g~~~hC~~C~~~f~~---~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLD-Q---DNGHARCRSCGEFIEM---KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEE-E---ETTEEEETTTCCEEEE---EEECTTTCSBCE
T ss_pred ccCccCCCcce-e---cCCEEECccccchhhc---cccCcchhhHHH
Confidence 68999998775 2 2355558777322211 246999999874
No 214
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=61.64 E-value=17 Score=28.90 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=56.2
Q ss_pred chHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhccCcHHHHHHHHHHHHHhhcccCCCC
Q 015513 314 AIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQADCEKYLKDRAKEILRLHSNVWNNSP 393 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~ 393 (405)
++..+.+.|....+..+-.|+.+|-.+.++++. ....++.....+..|..++. ...+.+|++...++..-.....+.|
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~-~f~~evas~~Fl~el~~l~~-~~~~~Vk~kil~li~~W~~~f~~~~ 120 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGK-IFHLEVCSRDFASEVSNVLN-KGHPKVCEKLKALMVEWTDEFKNDP 120 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-HHHHHHSSHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH-HHHHHHhhHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 456666666655667777888888888887774 35556666667777777775 4578999999999987776655554
No 215
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=61.12 E-value=15 Score=30.41 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=57.6
Q ss_pred chHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhc-----cCcHHHHHHHHHHHHHhhcc
Q 015513 314 AIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQA-----DCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~-----~~~~~~k~~A~~ll~~l~~~ 388 (405)
++..|.+.|...+...+-.|+.+|-.+.++++. ....++.+...+..|+.++.. .....+|+++..+++.-...
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~-~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGR-RFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH-HHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH-HHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 456677766666677788888988888888764 466677777888888888852 23678999999998876665
Q ss_pred cCCC
Q 015513 389 WNNS 392 (405)
Q Consensus 389 ~~~~ 392 (405)
..+.
T Consensus 130 f~~~ 133 (171)
T 1juq_A 130 LPEE 133 (171)
T ss_dssp CTTC
T ss_pred cCCC
Confidence 5443
No 216
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=61.07 E-value=14 Score=26.03 Aligned_cols=44 Identities=14% Similarity=0.227 Sum_probs=31.7
Q ss_pred CCcccCcCCcccCCCcccc--C--CCCcccHHHHHHHHhcC---CCCCCCC
Q 015513 7 PQYFICPISLQIMKDPVTA--I--TGISYDRESIEKWLKTA---KDTTCPV 50 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~--~--~g~~~~r~~I~~~~~~~---~~~~cP~ 50 (405)
-..++|.+|.+-+.|---+ | .+|.||--|-...+++. ....||.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 3458999999999994332 3 47999998888887642 2345776
No 217
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=61.06 E-value=14 Score=29.72 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=59.6
Q ss_pred chHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHHHHHHHhc-----cCcHHHHHHHHHHHHHhhcc
Q 015513 314 AIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSKLCMVTQA-----DCEKYLKDRAKEILRLHSNV 388 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~Ll~ll~~-----~~~~~~k~~A~~ll~~l~~~ 388 (405)
++..|.+.|...++..+-.|+.+|-.+.++++. ....++.+...+..|+.++.. .....+|+++..+++.-...
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~-~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE-KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH-HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 566777777666778888899999999888775 466777777888888888753 23678999999988877766
Q ss_pred cCCCC
Q 015513 389 WNNSP 393 (405)
Q Consensus 389 ~~~~~ 393 (405)
..+.|
T Consensus 118 f~~~p 122 (148)
T 1mhq_A 118 FPEDI 122 (148)
T ss_dssp CTTCH
T ss_pred cCCCc
Confidence 55443
No 218
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=60.87 E-value=3.1 Score=27.09 Aligned_cols=14 Identities=21% Similarity=0.688 Sum_probs=11.6
Q ss_pred CCCCcccCcCCccc
Q 015513 5 EVPQYFICPISLQI 18 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~ 18 (405)
++|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 32 DLPDDWACPVCGAS 45 (52)
T ss_dssp SSCTTCCCSSSCCC
T ss_pred HCCCCCcCCCCCCc
Confidence 47999999999863
No 219
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=60.00 E-value=2.8 Score=27.51 Aligned_cols=14 Identities=21% Similarity=0.710 Sum_probs=11.8
Q ss_pred CCCCcccCcCCccc
Q 015513 5 EVPQYFICPISLQI 18 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~ 18 (405)
++|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 32 DIPDDWVCPLCGVG 45 (54)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCcCCCCc
Confidence 57999999999864
No 220
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=55.75 E-value=33 Score=33.28 Aligned_cols=30 Identities=17% Similarity=0.082 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhh
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLEL 215 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~ 215 (405)
+|..++.+... .+..+|..|+..|-.+|.+
T Consensus 66 Ai~a~lDLcED----ed~~IR~qaik~Lp~~ck~ 95 (507)
T 3u0r_A 66 AINAQLDLCED----EDVSIRRQAIKELPQFATG 95 (507)
T ss_dssp HHHHHHHHHTC----SSHHHHHHHHHHGGGGCCT
T ss_pred HHHHHHHHHhc----ccHHHHHHHHHhhHHHhhh
Confidence 44444444444 4455555555555555543
No 221
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=55.73 E-value=3.7 Score=26.72 Aligned_cols=14 Identities=21% Similarity=0.755 Sum_probs=11.7
Q ss_pred CCCCcccCcCCccc
Q 015513 5 EVPQYFICPISLQI 18 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~ 18 (405)
++|+++.||+|+.-
T Consensus 31 ~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 31 DLPDDWVCPLCGAP 44 (52)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCCCCCCC
Confidence 57999999999853
No 222
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=54.83 E-value=3.8 Score=27.01 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=11.5
Q ss_pred CCCCcccCcCCccc
Q 015513 5 EVPQYFICPISLQI 18 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~ 18 (405)
++|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 32 DIPADWVCPDCGVG 45 (55)
T ss_dssp GSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 47899999999863
No 223
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=54.62 E-value=4.3 Score=29.06 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=13.0
Q ss_pred CCCCcccCcCCcccCCC
Q 015513 5 EVPQYFICPISLQIMKD 21 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~m~d 21 (405)
++|+++.||+|+.-=.+
T Consensus 56 dlPddW~CPvCga~K~~ 72 (81)
T 2kn9_A 56 DIPDDWSCPDCGAAKSD 72 (81)
T ss_dssp TSCTTCCCTTTCCCGGG
T ss_pred HCCCCCcCCCCCCCHHH
Confidence 58999999999864333
No 224
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=53.63 E-value=7.4 Score=30.10 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=36.8
Q ss_pred CCcccCcCCcccCCC-ccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKD-PVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~d-Pv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
++-|.|..|...+.+ +.....|..||+.+..+-+ ...|+.|++++..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~----~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH----AVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS----CCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc----CccCcccCCcCCc
Confidence 345999999998887 5556789999999976553 3679999998864
No 225
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=51.91 E-value=91 Score=29.69 Aligned_cols=109 Identities=11% Similarity=0.079 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhc----CCCcHHhHHHHHHHHHHHHhhhccchhhhcccH
Q 015513 152 TGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWEN----NDRHVAVKTSAMIVLKMVLELASKGLLESTLNL 227 (405)
Q Consensus 152 ~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~----~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~ 227 (405)
..+-.++.+|.|+-.+..--+.++.... ....++..+.... .+.+...+..++.++.|++........ ..
T Consensus 277 an~MltlR~laNlF~~~~~g~~ll~~~~--~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~----~~ 350 (425)
T 3pst_A 277 TLTMLTVRILVNCFNNENWGVKLLESNQ--VYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS----DL 350 (425)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHHHHTSHH--HHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS----CT
T ss_pred hHHHHHHHHHHHhcCCcchHHHHhhCch--hHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc----hH
Confidence 4467788999999876532344554322 3455555543110 002456788888899999865332111 12
Q ss_pred HHHHHHHHHHhh--------cCChHHHHHHHHHHHHhccCCchhHHH
Q 015513 228 DFFKEMVKLLKE--------NISQQATKSGLHVLLQACPMGGNRVKI 266 (405)
Q Consensus 228 g~i~~Lv~lL~~--------~~~~~~~~~a~~aL~~L~~~~~n~~~~ 266 (405)
..+..+++++.. ..+.++.-.++-||.+|...++..+.+
T Consensus 351 el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~~ 397 (425)
T 3pst_A 351 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQF 397 (425)
T ss_dssp THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 344556666651 137788888999999988644433333
No 226
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=51.78 E-value=32 Score=27.82 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=55.7
Q ss_pred chHHHHHHHHc-cChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHH-HHHHHhc--cCcHHHHHHHHHHHHHhhccc
Q 015513 314 AIAMVTKRLLR-VSPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSK-LCMVTQA--DCEKYLKDRAKEILRLHSNVW 389 (405)
Q Consensus 314 ~i~~Lv~~l~~-~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~-Ll~ll~~--~~~~~~k~~A~~ll~~l~~~~ 389 (405)
++..|.+.|.. .....+-.|+.+|-.+.++++. ....++.+...+.. |+.++.. +....+|+++..+++.-....
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~-~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGH-RFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCH-HHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCH-HHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 45566665542 3456677888888888888774 46667777777887 7777742 234689999999998777766
Q ss_pred CCCC
Q 015513 390 NNSP 393 (405)
Q Consensus 390 ~~~~ 393 (405)
++.|
T Consensus 133 ~~~p 136 (157)
T 1elk_A 133 RSSP 136 (157)
T ss_dssp TTCT
T ss_pred CCCc
Confidence 6554
No 227
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=51.24 E-value=4.7 Score=28.03 Aligned_cols=14 Identities=21% Similarity=0.648 Sum_probs=11.9
Q ss_pred CCCCcccCcCCccc
Q 015513 5 EVPQYFICPISLQI 18 (405)
Q Consensus 5 ~~~~~~~Cpi~~~~ 18 (405)
++|+++.||+|+.-
T Consensus 36 ~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 36 DLSDSFMCPACRSP 49 (70)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCCCCCCC
Confidence 48999999999864
No 228
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=50.56 E-value=2e+02 Score=30.87 Aligned_cols=122 Identities=9% Similarity=0.022 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHHhchHHHHHHHHHhh---ccCCCchhHHHHHHHHHhcCCCchhhHHhhcccchhH
Q 015513 106 HLRISTLKKMEALAMENERNRKSLEEAFVVRALVLFIITS---YKGNKTTGLEEALRILSLVWSPSNENKALVDHHNQDL 182 (405)
Q Consensus 106 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~---~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~ 182 (405)
+.+.-+|+.|.|+.. ...++.|.++|... ..+....++..|+++|..++...+. . +
T Consensus 455 ~~~~~~LkaLGN~g~-----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~---~-------v 513 (1056)
T 1lsh_A 455 EEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR---K-------V 513 (1056)
T ss_dssp HHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH---H-------H
T ss_pred HHHHHHHHHhhccCC-----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH---H-------H
Confidence 555666677766542 24567777777431 1111223456788888887643321 1 3
Q ss_pred HHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCc
Q 015513 183 IGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 183 i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
-+.|..+..+. ..+.++|..|..+|..- .+ ....+..++..+....+..+.......|.+++....
T Consensus 514 ~~il~~i~~n~--~e~~EvRiaA~~~Lm~t--~P---------~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~ 579 (1056)
T 1lsh_A 514 QEIVLPIFLNV--AIKSELRIRSCIVFFES--KP---------SVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN 579 (1056)
T ss_dssp HHHHHHHHHCT--TSCHHHHHHHHHHHHHT--CC---------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHhcCC--CCChHHHHHHHHHHHHH--Cc---------CHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCC
Confidence 44566666432 27889988888887542 11 234567777777775588888888899999988553
No 229
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=49.64 E-value=10 Score=28.11 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=25.4
Q ss_pred cccCcCCcccCCCccccCCCCcccHHHHHHHHhcC
Q 015513 9 YFICPISLQIMKDPVTAITGISYDRESIEKWLKTA 43 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~ 43 (405)
...||+|++.+...-+.+ + ..-|..|++|..++
T Consensus 57 ~~~cP~~~~~l~~~~L~p-n-~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 57 DQTDPFNRSPLTMDQIRP-N-TELKEKIQRWLAER 89 (98)
T ss_dssp SCBCTTTCSBCCTTTSEE-C-HHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCChhhceE-c-HHHHHHHHHHHHHc
Confidence 568999999998765555 3 34599999998764
No 230
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=49.14 E-value=13 Score=28.64 Aligned_cols=47 Identities=9% Similarity=0.052 Sum_probs=36.7
Q ss_pred cccCcCCcccCCC---ccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 9 YFICPISLQIMKD---PVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 9 ~~~Cpi~~~~m~d---Pv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
-|.|..|...|.| ......|..||+.+..+.+.. ...|..|++++..
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~--~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN--SGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC--CCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC--CCccccCCCCcCc
Confidence 3899999999974 455678999999998887632 2379999888764
No 231
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=49.05 E-value=76 Score=25.53 Aligned_cols=74 Identities=11% Similarity=0.097 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHH-HHHHHhhc--CChHHHHHHHHHHHHhcc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKE-MVKLLKEN--ISQQATKSGLHVLLQACP 258 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~-Lv~lL~~~--~~~~~~~~a~~aL~~L~~ 258 (405)
++..+.+-|.+ .+++..+..|..+|..+..+.......-+.+..++.. |++++... .+..+++.++..|..-+.
T Consensus 54 a~ral~krl~~---~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVG---NKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTT---CCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 66667777763 1678888999999988887654333221146789998 89998542 245788888888866553
No 232
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=48.21 E-value=7.5 Score=24.62 Aligned_cols=42 Identities=7% Similarity=0.062 Sum_probs=24.8
Q ss_pred CcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
..|.|++|+..|...-.+. .-+...... ....||.|+..+..
T Consensus 3 ~~~~C~~C~~~f~~~~~l~-------~H~~~h~~~-~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYYLN-------IHLRTHTGE-KPYKCEFCEYAAAQ 44 (57)
T ss_dssp --CBCTTTCCBCSCHHHHH-------HHHHHHHCC-CCEECSSSSCEESS
T ss_pred CCccCCCCcchhCChHHHH-------HHHHHcCCC-CCcCCCCCcchhCC
Confidence 3588999999888764332 122222222 24579999887653
No 233
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=48.12 E-value=1.2e+02 Score=27.46 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=74.9
Q ss_pred hHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhh-cccHHHHH
Q 015513 153 GLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLES-TLNLDFFK 231 (405)
Q Consensus 153 ~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~-~~~~g~i~ 231 (405)
..+.|+.-|..++.+- ..--.|.+..-..+..|+ +..+ .++..++.|+++|.....+......-+ .....++.
T Consensus 44 ~le~aLD~L~ElSHDi-~~G~KI~~~ef~lL~nL~-~~~~----~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~ 117 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDY-KHGYKIITHEFALLANLS-LNEN----LPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKS 117 (315)
T ss_dssp HHHHHHHHHGGGTTSH-HHHHHHHHHHHHHHHHHH-HCTT----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHH
T ss_pred HHHHHHHHHHHhhhhH-HhhhHHHhCcHHHHHHHH-hhcc----CChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHH
Confidence 4688888899998654 333333332101343333 2233 567789999999988766543322211 01223444
Q ss_pred HHHHHHhh----c--CChHHHHHHHHHHHHhccCCchhHHHHhhcchHHHHHHhhcC-CCCCcHHHHHHHHHHHh
Q 015513 232 EMVKLLKE----N--ISQQATKSGLHVLLQACPMGGNRVKITEANAVFELIELELTK-PEKSTTELIFNLLAQLC 299 (405)
Q Consensus 232 ~Lv~lL~~----~--~~~~~~~~a~~aL~~L~~~~~n~~~~v~~g~v~~Lv~lL~~~-~~~~~~e~a~~~L~~L~ 299 (405)
.+..-|.. + .+....+.-+.+|..|..+.. .+. ...+..|++++... .+..++..++..+..+-
T Consensus 118 ~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F~-~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 118 KIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DLP-IYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hhh-hccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 43333322 1 234667788888888888652 111 23556777777542 14456666666665553
No 234
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=46.99 E-value=7.6 Score=28.67 Aligned_cols=12 Identities=17% Similarity=0.783 Sum_probs=10.9
Q ss_pred ccHHHHHHHHhc
Q 015513 31 YDRESIEKWLKT 42 (405)
Q Consensus 31 ~~r~~I~~~~~~ 42 (405)
|||.|+.+|...
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 235
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=45.92 E-value=8.1 Score=28.48 Aligned_cols=12 Identities=33% Similarity=0.841 Sum_probs=10.9
Q ss_pred ccHHHHHHHHhc
Q 015513 31 YDRESIEKWLKT 42 (405)
Q Consensus 31 ~~r~~I~~~~~~ 42 (405)
|||.|+.+|...
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 236
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=44.90 E-value=5.4 Score=21.40 Aligned_cols=13 Identities=31% Similarity=0.662 Sum_probs=9.8
Q ss_pred cccCcCCcccCCC
Q 015513 9 YFICPISLQIMKD 21 (405)
Q Consensus 9 ~~~Cpi~~~~m~d 21 (405)
...||+|.+.|-.
T Consensus 6 ~vqcpvcqq~mpa 18 (29)
T 3vhs_A 6 QVQCPVCQQMMPA 18 (29)
T ss_dssp EEECTTTCCEEEG
T ss_pred eeeChHHHHhCcH
Confidence 3579999987744
No 237
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=43.16 E-value=9.7 Score=25.24 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=26.1
Q ss_pred CcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
..|.|++|+..|..+-.+. .-+.....+ ....|+.|+..+..
T Consensus 3 Kpy~C~~C~k~F~~~~~L~-------~H~~~Ht~e-kp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLS-------RHRRAHLGY-RPRSCPECGKCFRD 44 (60)
T ss_dssp CCEECTTTCCEESSHHHHH-------HHHHHHHTC-CCEECTTTCCEESS
T ss_pred CCccCCCCCCEeCCHHHHH-------HHHHHhCCC-cCeECCCCCCCcCC
Confidence 3589999999888764332 112222222 24579999988754
No 238
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=42.30 E-value=16 Score=28.32 Aligned_cols=49 Identities=10% Similarity=0.162 Sum_probs=37.4
Q ss_pred CCcccCcCCcccCCC---ccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKD---PVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~d---Pv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
++-|.|..|...|.+ +.....|.-||+.+..+-+.. ...|+.|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~--~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ--DGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC--CEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC--ccChhhcCCccCc
Confidence 455999999999963 566678999999998877632 1279999888753
No 239
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=40.82 E-value=2.9 Score=30.35 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=15.0
Q ss_pred cCcCCcccCCC-----ccccC-CCCcccHHHHHHH
Q 015513 11 ICPISLQIMKD-----PVTAI-TGISYDRESIEKW 39 (405)
Q Consensus 11 ~Cpi~~~~m~d-----Pv~~~-~g~~~~r~~I~~~ 39 (405)
.||-|...|.. +|+-+ ||+.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 49977775532 23333 5555555553333
No 240
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=40.75 E-value=35 Score=27.77 Aligned_cols=47 Identities=13% Similarity=0.233 Sum_probs=35.7
Q ss_pred CCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
++-|.|..|...|.+--....|.-||+.+..+-+ ...|..|++.+..
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f----~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF----GTKCAACQLGIPP 77 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH----SCBCTTTCCBCCT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeecccccccc----cccccccccccCC
Confidence 4459999999998875445689999999987765 2468888877753
No 241
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=40.43 E-value=15 Score=23.04 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=24.6
Q ss_pred CCcccCcCCcccCCCccccCCCCcccHHHHHHHHh-c---CCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDPVTAITGISYDRESIEKWLK-T---AKDTTCPVTKQPLP 56 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~-~---~~~~~cP~~~~~~~ 56 (405)
...|.|++|...|... ..+..... . .....|+.|+..+.
T Consensus 10 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 10 GKPYICQSCGKGFSRP-----------DHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SCCEECSSSCCEESSH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCeECCCCCcccCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 4558999998877654 23333332 1 12357999998775
No 242
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=40.31 E-value=94 Score=24.58 Aligned_cols=78 Identities=24% Similarity=0.202 Sum_probs=52.3
Q ss_pred chHHHHHHHHccChhhhHHHHHHHHHhcccCCCHHHHHHHHhcC-hHHHHHHHHhc-c---C---cHHHHHHHHHHHHHh
Q 015513 314 AIAMVTKRLLRVSPATNDRAVHILSSISKFSATYEVVLEMLSVG-AVSKLCMVTQA-D---C---EKYLKDRAKEILRLH 385 (405)
Q Consensus 314 ~i~~Lv~~l~~~s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G-~v~~Ll~ll~~-~---~---~~~~k~~A~~ll~~l 385 (405)
.+..|.+.|...+...+-.|+.+|..|+...+ +..+..+.+.- .|..+..+=.. + + ...+|++|.+++.++
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 45667776766667778889999999998655 45777777543 33433322221 1 1 257899999999999
Q ss_pred hcccCCC
Q 015513 386 SNVWNNS 392 (405)
Q Consensus 386 ~~~~~~~ 392 (405)
....+.+
T Consensus 129 ~d~~~~~ 135 (140)
T 1vdy_A 129 FSEENGS 135 (140)
T ss_dssp TCCSSCC
T ss_pred hCcCCCC
Confidence 8865544
No 243
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=38.34 E-value=16 Score=21.69 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=11.1
Q ss_pred CcccCcCCcccCCCc
Q 015513 8 QYFICPISLQIMKDP 22 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dP 22 (405)
..|.|++|...|...
T Consensus 9 k~~~C~~C~k~f~~~ 23 (45)
T 2epq_A 9 KPYSCPVCGLRFKRK 23 (45)
T ss_dssp CSSEETTTTEECSCH
T ss_pred CCCcCCCCCcccCCH
Confidence 358898888877654
No 244
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=38.05 E-value=28 Score=28.77 Aligned_cols=47 Identities=13% Similarity=0.233 Sum_probs=34.0
Q ss_pred CCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
++-|.|..|...|.+--....|.-||+.+..+-+ ...|..|++++..
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f----~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF----GTKCAACQLGIPP 131 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTT----SCCCTTTCCCCCS
T ss_pred cccCccCCCCCccCCCceeECCEeeecCcccccc----ccccccCCCccCC
Confidence 3458999999888775444578899988865433 3578899887754
No 245
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=36.38 E-value=56 Score=28.72 Aligned_cols=104 Identities=12% Similarity=0.087 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhc----CCCcHHhHHHHHHHHHHHHhhhccchhhhcccH
Q 015513 152 TGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWEN----NDRHVAVKTSAMIVLKMVLELASKGLLESTLNL 227 (405)
Q Consensus 152 ~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~----~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~ 227 (405)
..+--++.++.|+-.+..-.+.++.... ....++..+.+.. .+.+...+..++.++.|++........ ..
T Consensus 105 ~~~ml~lR~l~NlF~~~~~g~~l~~~~~--~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~----~~ 178 (253)
T 3gae_A 105 TLTMLTVRILVNCFNNENWGVKLLESNQ--VYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS----DL 178 (253)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHHHHTSHH--HHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS----CT
T ss_pred hHHHHHHHHHHHcccCCchHHHHHhcch--hHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc----hH
Confidence 3577888999999877642355555432 3444554432110 003556788888999999865332111 11
Q ss_pred HHHHHHHHHHhh--------cCChHHHHHHHHHHHHhccCCc
Q 015513 228 DFFKEMVKLLKE--------NISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 228 g~i~~Lv~lL~~--------~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
.....+++++.. ..+.++.-.++-||.+|...++
T Consensus 179 e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 179 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 334555555542 1267788888888888876444
No 246
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=35.82 E-value=83 Score=29.29 Aligned_cols=104 Identities=12% Similarity=0.078 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHHHHhhhc----CCCcHHhHHHHHHHHHHHHhhhccchhhhcccH
Q 015513 152 TGLEEALRILSLVWSPSNENKALVDHHNQDLIGALMWVLQWEN----NDRHVAVKTSAMIVLKMVLELASKGLLESTLNL 227 (405)
Q Consensus 152 ~~~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~lL~~~~----~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~ 227 (405)
..+-.++.+|.|+-.+..--+.++.... ....++..+.... .+.+...+..++.++.|++........ ..
T Consensus 214 ~n~MltlR~laNlF~~~~~g~~ll~~~~--~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~----~~ 287 (362)
T 3l3f_X 214 TLTMLTVRILVNCFNNENWGVKLLESNQ--VYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS----DL 287 (362)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHHHHTSHH--HHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS----CT
T ss_pred hHHHHHHHHHHHhccCcchHHHHHhcch--hHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc----hH
Confidence 4467888999999876532344553321 2334444432100 002456778888899999865332111 12
Q ss_pred HHHHHHHHHHh-----h---cCChHHHHHHHHHHHHhccCCc
Q 015513 228 DFFKEMVKLLK-----E---NISQQATKSGLHVLLQACPMGG 261 (405)
Q Consensus 228 g~i~~Lv~lL~-----~---~~~~~~~~~a~~aL~~L~~~~~ 261 (405)
..+..+++++. . ..+.++.-.++-||.+|...++
T Consensus 288 el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~ 329 (362)
T 3l3f_X 288 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 329 (362)
T ss_dssp THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 34455666665 1 1378888889999999886443
No 247
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.30 E-value=13 Score=27.82 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=18.4
Q ss_pred CCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCC
Q 015513 19 MKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQP 54 (405)
Q Consensus 19 m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~ 54 (405)
+.+|.-..||++|+. . -+....||.|+..
T Consensus 65 v~p~~C~~CG~~F~~----~---~~kPsrCP~CkSe 93 (105)
T 2gmg_A 65 IKPAQCRKCGFVFKA----E---INIPSRCPKCKSE 93 (105)
T ss_dssp ECCCBBTTTCCBCCC----C---SSCCSSCSSSCCC
T ss_pred EECcChhhCcCeecc----c---CCCCCCCcCCCCC
Confidence 455666689999921 0 1224679999864
No 248
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=35.24 E-value=28 Score=25.19 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=22.6
Q ss_pred cccCcCCcccC-CCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 9 YFICPISLQIM-KDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 9 ~~~Cpi~~~~m-~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.|.|++|+..| ...-.+ +.-+... .+ ....|+.|++.+..
T Consensus 34 ~~~C~~C~k~F~~~~~~L-------~~H~~~h-~~-k~~~C~~Cgk~F~~ 74 (96)
T 2ctd_A 34 SVSCPTCQAVGRKTIEGL-------KKHMENC-KQ-EMFTCHHCGKQLRS 74 (96)
T ss_dssp CEECTTTCSCEESSHHHH-------HHHHHHH-CC-CCCCCSSSCCCCSS
T ss_pred CcCCCCCCCCcccCHHHH-------HHHHHHH-CC-CCeECCCCCCeeCC
Confidence 36788877766 443221 1122223 22 25679999888754
No 249
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.19 E-value=18 Score=26.14 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=25.7
Q ss_pred CcccCcCCcccCC-CccccCCCCcccHHHHHHHHh-cCCCCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMK-DPVTAITGISYDRESIEKWLK-TAKDTTCPVTKQPLPR 57 (405)
Q Consensus 8 ~~~~Cpi~~~~m~-dPv~~~~g~~~~r~~I~~~~~-~~~~~~cP~~~~~~~~ 57 (405)
..|.|++|...|. ..-.+. .-+..... . ....|+.|+..|..
T Consensus 23 ~~~~C~~C~k~f~~~~~~L~-------~H~~~h~~~~-~~~~C~~C~k~F~~ 66 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLK-------KHMEVCQKLQ-DALKCQHCRKQFKS 66 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHHH-------HHHHHHHHHH-HHHSCSSSCCCCSC
T ss_pred CCcCCCCCCCChhhhHHHHH-------HHHHHHcCCC-CCEECCCCCCccCC
Confidence 4589999999887 654332 12222221 1 13579999888754
No 250
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=34.42 E-value=2.1 Score=30.68 Aligned_cols=40 Identities=18% Similarity=0.439 Sum_probs=23.9
Q ss_pred ccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
..||.|...|.- ..++.+|..|=..+ .. ...||.|++++.
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~~-~~--~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKDF-SL--QALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCEE-EE--EEECSSSCSCCC
T ss_pred CCCCCCCCcccc----CCCceECccccccC-CC--cccCcchhhHHH
Confidence 679999987652 23344466662211 11 136999998874
No 251
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.30 E-value=36 Score=20.12 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=11.6
Q ss_pred CcccCcCCcccCCCcc
Q 015513 8 QYFICPISLQIMKDPV 23 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv 23 (405)
..|.|++|+..|..+-
T Consensus 11 k~~~C~~C~k~f~~~~ 26 (46)
T 2ytm_A 11 KPYKCMECGKAFGDNS 26 (46)
T ss_dssp CSSSBTTTTBCCSSHH
T ss_pred CCcCCCCCCchhCCHH
Confidence 4578888888777653
No 252
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=34.24 E-value=9.6 Score=24.06 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=22.8
Q ss_pred ccCcCCcccCCCccccCCCCcccHHHHHHHHhc---CCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAITGISYDRESIEKWLKT---AKDTTCPVTKQPLPR 57 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~---~~~~~cP~~~~~~~~ 57 (405)
|.|++|+..|..+-.+ ...... .....|+.|+..+..
T Consensus 2 ~~C~~C~~~f~~~~~l-----------~~H~~~h~~~~~~~C~~C~~~f~~ 41 (57)
T 1bbo_A 2 YICEECGIRXKKPSML-----------KKHIRTHTDVRPYHCTYCNFSFKT 41 (57)
T ss_dssp CBCTTTCCBCSSHHHH-----------HHHHHHTSSCCCEECSSSSCEESS
T ss_pred CcCCCCcCcCCCHHHH-----------HHHHHhcCCCCCccCCCCCchhcC
Confidence 6799998888765432 222221 113469999887753
No 253
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=34.19 E-value=26 Score=24.08 Aligned_cols=45 Identities=7% Similarity=-0.014 Sum_probs=32.3
Q ss_pred CCcccCcCCcccCCC-ccccCCCCcccH-HHHHHHHhcCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKD-PVTAITGISYDR-ESIEKWLKTAKDTTCPVTKQPL 55 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~d-Pv~~~~g~~~~r-~~I~~~~~~~~~~~cP~~~~~~ 55 (405)
++-|.|..|...+.+ +.....|.-||+ .+..+-+ ...|..|+..+
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f----~~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF----GPKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS----SCCCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHh----CccCCCcCCce
Confidence 345899999998887 555667889998 5876553 34677776554
No 254
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.71 E-value=30 Score=23.27 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=13.8
Q ss_pred ccCcCCcccCCCc-cccCCCCcccHHHHHHHH
Q 015513 10 FICPISLQIMKDP-VTAITGISYDRESIEKWL 40 (405)
Q Consensus 10 ~~Cpi~~~~m~dP-v~~~~g~~~~r~~I~~~~ 40 (405)
|.|..|...|.+- .....|..||+.|..+.+
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHHHHHHH
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHHhhhhc
Confidence 4555555444442 122344455555544443
No 255
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.28 E-value=9.1 Score=25.82 Aligned_cols=43 Identities=7% Similarity=0.089 Sum_probs=24.5
Q ss_pred CCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
...|.|++|...|...-.+. .-+..... .....|+.|+..+..
T Consensus 12 ~k~~~C~~C~k~f~~~~~L~-------~H~~~h~~-~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSILV-------QHQRVHTG-EKPYKCLECGKAFSQ 54 (72)
T ss_dssp CCCEECSSSCCEESSHHHHH-------HHHHGGGC-SCCEECSSSCCEESS
T ss_pred CCCccCCCCCCccCCHHHHH-------HHHHhcCC-CCCeECCCCCcccCC
Confidence 34589999988877654322 11111111 123569999887753
No 256
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.14 E-value=18 Score=24.82 Aligned_cols=29 Identities=7% Similarity=0.083 Sum_probs=14.1
Q ss_pred ccCcCCcccCC--CccccCCCCcccHHHHHH
Q 015513 10 FICPISLQIMK--DPVTAITGISYDRESIEK 38 (405)
Q Consensus 10 ~~Cpi~~~~m~--dPv~~~~g~~~~r~~I~~ 38 (405)
|.|..|...|. +......|..||+.|..+
T Consensus 32 F~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~ 62 (73)
T 1wig_A 32 ALCVRCGQMFAEGEEMYLQGSSIWHPACRQA 62 (73)
T ss_dssp SCCSSSCCCCCSSCCCEEETTEEECTTHHHH
T ss_pred CEeCCCCCCCCCCCeeEeeCCEEEChHHChH
Confidence 55555555554 233334445555555443
No 257
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=33.09 E-value=9.1 Score=32.08 Aligned_cols=49 Identities=14% Similarity=0.309 Sum_probs=37.3
Q ss_pred CCcccCcCCcccCCC---ccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKD---PVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~d---Pv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
++-|.|..|...|.+ +.....|.-||+.|..+-+.. ...|+.|++++..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~--~~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN--SGACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC--CEECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCcccccccccccccc--CCccccCCCcccc
Confidence 345999999999885 666778999999998776531 1269999887753
No 258
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.84 E-value=35 Score=20.16 Aligned_cols=16 Identities=6% Similarity=0.154 Sum_probs=11.5
Q ss_pred CcccCcCCcccCCCcc
Q 015513 8 QYFICPISLQIMKDPV 23 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv 23 (405)
..|.|++|+..|..+-
T Consensus 11 k~~~C~~C~k~f~~~~ 26 (46)
T 2ytt_A 11 KPYQCSECGKSFSGSY 26 (46)
T ss_dssp CTTCCSSSCCCCSSHH
T ss_pred CCeeCCCCCcccCCHH
Confidence 4478888888777654
No 259
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.76 E-value=33 Score=24.48 Aligned_cols=36 Identities=22% Similarity=0.496 Sum_probs=19.0
Q ss_pred cCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 11 ICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 11 ~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
.|+-|.+...+.++..-|..|-..| +.|-.|+.+|.
T Consensus 27 ~C~~C~~~I~~~~v~a~~~~~H~~C----------F~C~~C~~~L~ 62 (90)
T 2dar_A 27 MCAHCNQVIRGPFLVALGKSWHPEE----------FNCAHCKNTMA 62 (90)
T ss_dssp BBSSSCCBCCSCEEEETTEEECTTT----------CBCSSSCCBCS
T ss_pred CCccCCCEecceEEEECCccccccC----------CccCCCCCCCC
Confidence 4666666555555555554443322 45555555554
No 260
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=32.52 E-value=20 Score=24.05 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=25.2
Q ss_pred CCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
...|.|++|+..|...-.+. .-+..... .....|+.|+..+..
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~-------~H~~~H~~-~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLA-------SHKTVHTG-EKPYRCNICGAQFNR 57 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHH-------HHHHHHCC-CCSEECTTTCCEESC
T ss_pred CCCeECCCCCceeCCHHHHH-------HHHHHcCC-CCCEECCCCCchhCC
Confidence 34589999998887654321 11111111 123569999887754
No 261
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=32.51 E-value=38 Score=19.99 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=11.4
Q ss_pred CcccCcCCcccCCCcc
Q 015513 8 QYFICPISLQIMKDPV 23 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv 23 (405)
..|.|++|+..|...-
T Consensus 11 k~~~C~~C~k~f~~~~ 26 (46)
T 2ely_A 11 KPFKCVECGKGFSRRS 26 (46)
T ss_dssp CSBCCSSSCCCBSSTT
T ss_pred CCcccCccCcccCCHH
Confidence 4578888888776653
No 262
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=32.34 E-value=1.9e+02 Score=25.04 Aligned_cols=147 Identities=14% Similarity=0.015 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhcc-C
Q 015513 181 DLIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACP-M 259 (405)
Q Consensus 181 ~~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~-~ 259 (405)
..++..-.+.++ ...++|.-|+.+|..+ . . ....++.+...+....+..+++.++.++..++. .
T Consensus 71 ~~~~la~~L~~~----~~deVR~~Av~lLg~~-~--------~--~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~ 135 (240)
T 3l9t_A 71 YIKKLAFLAYQS----DVYQVRMYAVFLFGYL-S--------K--DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKI 135 (240)
T ss_dssp HHHHHHHHHHTC----SSHHHHHHHHHHHHHT-T--------T--SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC----cchHHHHHHHHHHHhc-c--------C--cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhc
Q ss_pred CchhHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHHhcCHhhHHHHHhcccchHHHHHHHHccChhhhHHHHHHHHH
Q 015513 260 GGNRVKITEANAVFELIELELTKPEKSTTELIFNLLAQLCSCADGRLKFREHAGAIAMVTKRLLRVSPATNDRAVHILSS 339 (405)
Q Consensus 260 ~~n~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~ 339 (405)
+..+ .++.+...+.+. +..++..|..-+.--+..+..+...-. .++.|-.+....+.-.+......|.-
T Consensus 136 ~pe~-------~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~k~dp~~---ll~iL~~L~~D~s~yVrKSVan~LrD 204 (240)
T 3l9t_A 136 EYKK-------ALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYFKENPNE---AIRRIADLKEDVSEYVRKSVGNALRD 204 (240)
T ss_dssp CTTT-------THHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTTTTCHHH---HHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred CHHH-------HHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchhhcCHHH---HHHHHHHhcCChHHHHHHHHHHHHHH
Q ss_pred hcccCCCHHHHHHHHh
Q 015513 340 ISKFSATYEVVLEMLS 355 (405)
Q Consensus 340 L~~~~~~~~~~~~~~~ 355 (405)
+++..++ .+...++
T Consensus 205 ~SK~~Pd--~V~~~~~ 218 (240)
T 3l9t_A 205 ISKKFPD--LVKIELK 218 (240)
T ss_dssp HHTTCHH--HHHHHHH
T ss_pred HhhhCHH--HHHHHHH
No 263
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.21 E-value=36 Score=22.80 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=17.0
Q ss_pred cccCcCCcccCCC-ccccCCCCcccHHHHHHH
Q 015513 9 YFICPISLQIMKD-PVTAITGISYDRESIEKW 39 (405)
Q Consensus 9 ~~~Cpi~~~~m~d-Pv~~~~g~~~~r~~I~~~ 39 (405)
-|.|..|...+.+ +.....|.-||+.+..+.
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 31 CFVCTACRKQLSGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp TSBCSSSCCBCTTSCCEESSSSEECHHHHHHH
T ss_pred CCccCCCCCcCCcCceEeeCCeEECHHHHHHH
Confidence 3666666666544 333345666666665444
No 264
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=31.76 E-value=11 Score=27.07 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=25.0
Q ss_pred CCcccCcCCcccCCCccccCCCCcccHHHHHHHHhc--C-CCCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKDPVTAITGISYDRESIEKWLKT--A-KDTTCPVTKQPLPR 57 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~--~-~~~~cP~~~~~~~~ 57 (405)
.+.+.||+|+..|...- .+.+.... + ....|+.|++.|..
T Consensus 26 ~~~h~C~~Cgk~F~~~~-----------~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 26 AECHLCPVCGESFASKG-----------AQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp CTTEECTTSCCEESSHH-----------HHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCCEECCCCCCCcCcHH-----------HHhhhhhhccCCCccCCCCCCCEeCC
Confidence 34578999998877653 33333322 1 13469999888754
No 265
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=31.23 E-value=18 Score=26.48 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=33.7
Q ss_pred CcccCcCCcccCCCc-cccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKDP-VTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dP-v~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
+-|.|..|...|.+. .....|..||+.+..+ .. ...|..|++++.+
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~---~~-~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTR---ED-SPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTT---CC-CCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhh---hc-CCccccCCCcccc
Confidence 448999999988764 4456789999888533 22 4679999888753
No 266
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.25 E-value=36 Score=20.11 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=11.3
Q ss_pred CcccCcCCcccCCCc
Q 015513 8 QYFICPISLQIMKDP 22 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dP 22 (405)
..|.|++|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2em8_A 11 KPYKCVECGKGYKRR 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeECcccCchhCCH
Confidence 458899888877665
No 267
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.16 E-value=44 Score=23.11 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=11.0
Q ss_pred cCcCCcccCCCccccCCCCcc
Q 015513 11 ICPISLQIMKDPVTAITGISY 31 (405)
Q Consensus 11 ~Cpi~~~~m~dPv~~~~g~~~ 31 (405)
.|+-|.+...+.++..-|..|
T Consensus 17 ~C~~C~~~I~~~~~~a~~~~~ 37 (81)
T 1x6a_A 17 FCHGCSLLMTGPFMVAGEFKY 37 (81)
T ss_dssp BCTTTCCBCCSCCBCCTTCCB
T ss_pred cCccCCCCcCceEEEECCcee
Confidence 455665555555554444444
No 268
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=29.28 E-value=36 Score=26.19 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=22.8
Q ss_pred ccCcCCcccCCCcc-ccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPV-TAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv-~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
-.|+-|++...+.. +..-|..|=+.| +.|-.|+.+|.
T Consensus 62 ~~C~~C~~~I~~~~~v~a~~~~wH~~C----------F~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYAMDSYWHSRC----------LKCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEEEETTEEEETTT----------SBCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEEEeCCcEEcccc----------cCcCcCCCccc
Confidence 47888887777663 445565554433 56777776663
No 269
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.13 E-value=34 Score=20.15 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=11.7
Q ss_pred CcccCcCCcccCCCcc
Q 015513 8 QYFICPISLQIMKDPV 23 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv 23 (405)
..|.|++|+..|..+-
T Consensus 11 k~~~C~~C~k~F~~~~ 26 (46)
T 2emh_A 11 RPYICTVCGKAFTDRS 26 (46)
T ss_dssp CSEECTTTCCEESSHH
T ss_pred CCcCCCCCCchhCCHH
Confidence 4588888888777664
No 270
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.95 E-value=49 Score=22.02 Aligned_cols=32 Identities=16% Similarity=0.356 Sum_probs=18.1
Q ss_pred cccCcCCcccCCC-ccccCCCCcccHHHHHHHH
Q 015513 9 YFICPISLQIMKD-PVTAITGISYDRESIEKWL 40 (405)
Q Consensus 9 ~~~Cpi~~~~m~d-Pv~~~~g~~~~r~~I~~~~ 40 (405)
-|.|..|...+.+ ......|..||+.+..+.+
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 31 CFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHH
T ss_pred cCEECCCCCCCCCCccEeECCEEECHHHhHHHh
Confidence 3666666666643 2334456666666665554
No 271
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.37 E-value=40 Score=19.81 Aligned_cols=15 Identities=7% Similarity=0.135 Sum_probs=11.1
Q ss_pred CcccCcCCcccCCCc
Q 015513 8 QYFICPISLQIMKDP 22 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dP 22 (405)
..|.|++|+..|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2emp_A 11 KPYMCNECGKAFSVY 25 (46)
T ss_dssp CSEECSSSCCEESCH
T ss_pred cCeECCCCCchhCCH
Confidence 458888888877665
No 272
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=28.34 E-value=5.3e+02 Score=27.71 Aligned_cols=98 Identities=7% Similarity=0.106 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHhcCCCchh--hHHhhcccchhHHHHHHHHHhhhcCCCcHHh--HHHHHHHHHHHHhhhccchhhhcccH
Q 015513 152 TGLEEALRILSLVWSPSNE--NKALVDHHNQDLIGALMWVLQWENNDRHVAV--KTSAMIVLKMVLELASKGLLESTLNL 227 (405)
Q Consensus 152 ~~~e~A~~~L~~L~~~~~~--~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~~--~~~A~~~L~~L~~~~~~~~~i~~~~~ 227 (405)
...|.+++++..++..-.+ -+..+.. .++.|+.+..... |.+... +...+++++..+.--....... .
T Consensus 494 ~~lea~~~aigaIag~~~~~~E~~~Lp~----vi~~Ll~L~e~~~-~kd~k~~vas~i~~vlgrY~~wl~~h~~~L---~ 565 (1073)
T 3gjx_A 494 KNLNTLCWAIGSISGAMHEEDEKRFLVT----VIKDLLGLCEQKR-GKDNKAIIASNIMYIVGQYPRFLRAHWKFL---K 565 (1073)
T ss_dssp HHHHHHHHHHHHTTTSSCHHHHHHHHHH----HHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHCHHHHHHCHHHH---H
T ss_pred HHHhHHHHHHHHHHCcCCcccccchHHH----HHHHHhccccccc-ccchhHHHHHHHHHHHhhhHHHHHhCHHHH---H
Confidence 4578899999999753221 2233321 5666666665411 112222 2222244444332111111111 1
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 015513 228 DFFKEMVKLLKENISQQATKSGLHVLLQACP 258 (405)
Q Consensus 228 g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~ 258 (405)
..+..|++.+.+. ++.++.+|+.|+..+|.
T Consensus 566 ~vl~~L~~~m~~~-~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 566 TVVNKLFEFMHET-HDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHHHHTTCC-STTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 3445555555555 78999999999999987
No 273
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.27 E-value=56 Score=21.89 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=16.5
Q ss_pred ccCcCCcccCCCc-cccCCCCcccHHHHHHHH
Q 015513 10 FICPISLQIMKDP-VTAITGISYDRESIEKWL 40 (405)
Q Consensus 10 ~~Cpi~~~~m~dP-v~~~~g~~~~r~~I~~~~ 40 (405)
|.|..|...|.+- .....|.-||+.+..+.+
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATL 65 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHH
Confidence 5666666555432 333455566666655554
No 274
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=28.15 E-value=35 Score=22.53 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=10.4
Q ss_pred cCcCCcccCCCccccCCCCcccH
Q 015513 11 ICPISLQIMKDPVTAITGISYDR 33 (405)
Q Consensus 11 ~Cpi~~~~m~dPv~~~~g~~~~r 33 (405)
.|+-|.+...+.++..-|..|-.
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~ 29 (66)
T 1nyp_A 7 ICGACRRPIEGRVVNAMGKQWHV 29 (66)
T ss_dssp EETTTTEECCSCEECCTTSBEET
T ss_pred CCcccCCEecceEEEECcccccc
Confidence 34444444444444444444443
No 275
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=28.05 E-value=22 Score=24.91 Aligned_cols=42 Identities=17% Similarity=0.307 Sum_probs=25.8
Q ss_pred CcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
..|.|++|+..|..+-.+. .-+...... ....|+.|+..+..
T Consensus 2 k~~~C~~C~k~f~~~~~L~-------~H~~~H~~~-~~~~C~~C~k~f~~ 43 (88)
T 1llm_C 2 KPFQCRICMRNFSRSDHLT-------THIRTHTGE-KPFACDICGRKFAR 43 (88)
T ss_dssp CCEECTTTCCEESCHHHHH-------HHHHHHHCC-CCEECTTTCCEESS
T ss_pred CCCcCCCCCCccCCHHHHH-------HHHHHcCCC-CCccCCCCCCccCC
Confidence 3588999998887764332 122223222 24579999887754
No 276
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=27.91 E-value=14 Score=23.58 Aligned_cols=38 Identities=13% Similarity=0.454 Sum_probs=23.2
Q ss_pred cccCcCCcccCCCccccCCCCcccHHHHHHHHhc---CCCCCCCCCCCCCCC
Q 015513 9 YFICPISLQIMKDPVTAITGISYDRESIEKWLKT---AKDTTCPVTKQPLPR 57 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~---~~~~~cP~~~~~~~~ 57 (405)
.|.|++|+..|..+-. +...... .....||.|+..+..
T Consensus 2 ~~~C~~C~~~f~~~~~-----------l~~H~~~h~~~~~~~C~~C~~~f~~ 42 (60)
T 2adr_A 2 SFVCEVCTRAFARQEH-----------LKRHYRSHTNEKPYPCGLCNRAFTR 42 (60)
T ss_dssp CBCCTTTCCCBSCHHH-----------HHHHHHTTTSSCSEECTTTCCEESS
T ss_pred cCcCCCCccccCCHHH-----------HHHHHHHhCCCCCccCCCCCCccCC
Confidence 4789999887776532 2222221 113469999887754
No 277
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=27.72 E-value=37 Score=25.14 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=12.5
Q ss_pred CCcccCcCCcccCCCcc
Q 015513 7 PQYFICPISLQIMKDPV 23 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv 23 (405)
...|.|++|...|...-
T Consensus 5 ~~~~~C~~C~~~f~~~~ 21 (124)
T 2dlq_A 5 SSGVECPTCHKKFLSKY 21 (124)
T ss_dssp CSSCCCTTTCCCCSSHH
T ss_pred CCCCCCCCCCCcCCCHH
Confidence 34588999998887653
No 278
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.41 E-value=25 Score=23.81 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=26.0
Q ss_pred CcccCcCCcccCCCccccCCCCcccHHHHHHHHhc--CCCCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKDPVTAITGISYDRESIEKWLKT--AKDTTCPVTKQPLPR 57 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~--~~~~~cP~~~~~~~~ 57 (405)
..|.|++|...|...-.+. .-+...... .....|+.|+..+..
T Consensus 6 k~~~C~~C~k~f~~~~~L~-------~H~~~h~~~~~~~~~~C~~C~k~f~~ 50 (78)
T 2d9h_A 6 SGLQCEICGFTCRQKASLN-------WHQRKHAETVAALRFPCEFCGKRFEK 50 (78)
T ss_dssp CCEECSSSCCEESSHHHHH-------HHHHHHHHHTTTCCEECTTTCCEESS
T ss_pred cCeECCCCCCeeCCHHHHH-------HHHHHhhccCCCcccCCCCCCchhCC
Confidence 4589999998887764322 122223221 124579999887754
No 279
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=27.30 E-value=42 Score=19.76 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=11.0
Q ss_pred CcccCcCCcccCCCc
Q 015513 8 QYFICPISLQIMKDP 22 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dP 22 (405)
..|.|++|+..|..+
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2emk_A 11 KPYECKECGKAFSQT 25 (46)
T ss_dssp CSCBCSSSCCBCSCH
T ss_pred CceECCCCCchhCCH
Confidence 348888888877765
No 280
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=27.16 E-value=50 Score=23.71 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=12.3
Q ss_pred CCcccCcCCcccCCCc
Q 015513 7 PQYFICPISLQIMKDP 22 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dP 22 (405)
...|.|++|...|...
T Consensus 15 ~~~~~C~~C~~~f~~~ 30 (106)
T 2ee8_A 15 KKEFICKFCGRHFTKS 30 (106)
T ss_dssp CCCCBCSSSCCBCSSH
T ss_pred CcCeECCCCCCccCCH
Confidence 4458999999888764
No 281
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.60 E-value=43 Score=19.72 Aligned_cols=16 Identities=6% Similarity=-0.010 Sum_probs=11.6
Q ss_pred CcccCcCCcccCCCcc
Q 015513 8 QYFICPISLQIMKDPV 23 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv 23 (405)
..|.|++|+..|..+-
T Consensus 11 k~~~C~~C~k~F~~~~ 26 (46)
T 2eoo_A 11 RPYGCNECGKNFGRHS 26 (46)
T ss_dssp CCEECSSSCCEESSHH
T ss_pred CCEEccccCcccCCHH
Confidence 3588888888777653
No 282
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=26.46 E-value=3.2e+02 Score=25.92 Aligned_cols=130 Identities=9% Similarity=0.037 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHH-HHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHH
Q 015513 154 LEEALRILSLVWSPSNENKALVDHHNQDLIGALMW-VLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKE 232 (405)
Q Consensus 154 ~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~-lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~ 232 (405)
+--++.+|+.+..+.+.. + .+..++. .+.+ .++..+..++++|.|+-........+. ........
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~--~l~~li~~~l~~----~~~an~MltlR~laNlF~~~~~g~~ll-~~~~~~~~ 308 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------S--DIKDYIEEGLGN----KNITLTMLTVRILVNCFNNENWGVKLL-ESNQVYKS 308 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------G--GGHHHHHHHTTC----SSHHHHHHHHHHHHHHTTCTTTHHHHH-TSHHHHHH
T ss_pred ccHHHHHHHHHHcCCchH-------H--HHHHHHHHhcCC----CChhHHHHHHHHHHHhcCCcchHHHHh-hCchhHHH
Confidence 456777887766544211 1 2333332 2333 577888999999999987776444444 34445566
Q ss_pred HHHHHhhc-------CChHHHHHHHHHHHHhccCCc-hhHHHHhhcchHHHHHHhhc--------CCCCCcHHHHHHHHH
Q 015513 233 MVKLLKEN-------ISQQATKSGLHVLLQACPMGG-NRVKITEANAVFELIELELT--------KPEKSTTELIFNLLA 296 (405)
Q Consensus 233 Lv~lL~~~-------~~~~~~~~a~~aL~~L~~~~~-n~~~~v~~g~v~~Lv~lL~~--------~~~~~~~e~a~~~L~ 296 (405)
+++.+... .+...+.+++..++|++..-. .+. +...++.+++.+.. ..+.+..-.++.+|+
T Consensus 309 i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALG 385 (425)
T 3pst_A 309 IFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYG 385 (425)
T ss_dssp HHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHH
Confidence 77665321 144677888889999987311 111 12344566666651 125567778888888
Q ss_pred HHhc
Q 015513 297 QLCS 300 (405)
Q Consensus 297 ~L~~ 300 (405)
+|..
T Consensus 386 tLv~ 389 (425)
T 3pst_A 386 NLAT 389 (425)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 283
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=26.41 E-value=28 Score=17.67 Aligned_cols=12 Identities=17% Similarity=0.683 Sum_probs=6.2
Q ss_pred ccCcCCcccCCC
Q 015513 10 FICPISLQIMKD 21 (405)
Q Consensus 10 ~~Cpi~~~~m~d 21 (405)
|.|++|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 455555554443
No 284
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=26.19 E-value=8.2 Score=27.47 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=22.4
Q ss_pred cccCcC--CcccCCC-----cccc------CCCCcccHHHHHHH
Q 015513 9 YFICPI--SLQIMKD-----PVTA------ITGISYDRESIEKW 39 (405)
Q Consensus 9 ~~~Cpi--~~~~m~d-----Pv~~------~~g~~~~r~~I~~~ 39 (405)
-..||- |...+.- +|+- .||+.||..|-+.|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 457888 8766532 3444 48999999998877
No 285
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=25.97 E-value=25 Score=19.46 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=10.3
Q ss_pred CcccCcCCcccCCCc
Q 015513 8 QYFICPISLQIMKDP 22 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dP 22 (405)
..|.|++|+..|..+
T Consensus 10 k~~~C~~C~k~f~~~ 24 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRS 24 (37)
T ss_dssp SSBCCTTTCCCBSSH
T ss_pred CCccCCCCCcccCcH
Confidence 347888887766654
No 286
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.71 E-value=37 Score=19.97 Aligned_cols=16 Identities=6% Similarity=0.081 Sum_probs=11.4
Q ss_pred CcccCcCCcccCCCcc
Q 015513 8 QYFICPISLQIMKDPV 23 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv 23 (405)
..|.|++|+..|..+-
T Consensus 11 k~~~C~~C~k~F~~~~ 26 (46)
T 2emy_A 11 NPYECHECGKAFSRKY 26 (46)
T ss_dssp CCEECSSSCCEESSHH
T ss_pred cCcCCCCCCcccCcHH
Confidence 4588888887776653
No 287
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=24.92 E-value=17 Score=25.67 Aligned_cols=11 Identities=27% Similarity=0.646 Sum_probs=6.3
Q ss_pred ccCcCCcccCC
Q 015513 10 FICPISLQIMK 20 (405)
Q Consensus 10 ~~Cpi~~~~m~ 20 (405)
|.||.|++-|.
T Consensus 52 FkCP~CgEEFy 62 (95)
T 2k5c_A 52 FKCPVCGEEFY 62 (95)
T ss_dssp EECTTTCCEEE
T ss_pred hcCCCccHHHh
Confidence 45666665554
No 288
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=24.89 E-value=30 Score=26.47 Aligned_cols=21 Identities=10% Similarity=0.140 Sum_probs=13.4
Q ss_pred CCCCcccHHHHHHHHhcCCCC-CCCCCCCC
Q 015513 26 ITGISYDRESIEKWLKTAKDT-TCPVTKQP 54 (405)
Q Consensus 26 ~~g~~~~r~~I~~~~~~~~~~-~cP~~~~~ 54 (405)
.|||.|.- .. ... .||.|+.+
T Consensus 78 ~CG~~~e~-------~~-~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 78 DCSHVFKP-------NA-LDYGVCEKCHSK 99 (119)
T ss_dssp SSSCEECS-------CC-STTCCCSSSSSC
T ss_pred CCCCEEeC-------CC-CCCCcCccccCC
Confidence 36666654 12 246 79999876
No 289
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=24.86 E-value=25 Score=17.55 Aligned_cols=13 Identities=8% Similarity=0.378 Sum_probs=7.6
Q ss_pred ccCcCCcccCCCc
Q 015513 10 FICPISLQIMKDP 22 (405)
Q Consensus 10 ~~Cpi~~~~m~dP 22 (405)
|.|++|+..|..+
T Consensus 2 ~~C~~C~k~f~~~ 14 (27)
T 1znf_A 2 YKCGLCERSFVEK 14 (27)
T ss_dssp CBCSSSCCBCSSH
T ss_pred ccCCCCCCcCCCH
Confidence 5566666655543
No 290
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.73 E-value=33 Score=17.25 Aligned_cols=9 Identities=22% Similarity=0.744 Sum_probs=4.4
Q ss_pred CCCCCCCCC
Q 015513 47 TCPVTKQPL 55 (405)
Q Consensus 47 ~cP~~~~~~ 55 (405)
.|+.|+..+
T Consensus 4 ~C~~C~~~f 12 (29)
T 2m0e_A 4 KCPHCDKKF 12 (29)
T ss_dssp CCSSCCCCC
T ss_pred cCCCCCccc
Confidence 355555444
No 291
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=24.72 E-value=31 Score=17.56 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=8.2
Q ss_pred ccCcCCcccCCCc
Q 015513 10 FICPISLQIMKDP 22 (405)
Q Consensus 10 ~~Cpi~~~~m~dP 22 (405)
|.|++|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1klr_A 3 YQCQYCEFRSADS 15 (30)
T ss_dssp CCCSSSSCCCSCS
T ss_pred ccCCCCCCccCCH
Confidence 5677776666554
No 292
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=24.56 E-value=13 Score=22.62 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=12.5
Q ss_pred CCcccCcCCcccCCCcc
Q 015513 7 PQYFICPISLQIMKDPV 23 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv 23 (405)
...|.|++|...|...-
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (48)
T 2epr_A 10 RKQVACEICGKIFRDVY 26 (48)
T ss_dssp CCSEEETTTTEEESSHH
T ss_pred CcCeeCCCCCcccCCHH
Confidence 45689999988777653
No 293
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.47 E-value=38 Score=19.92 Aligned_cols=15 Identities=7% Similarity=0.175 Sum_probs=11.0
Q ss_pred CcccCcCCcccCCCc
Q 015513 8 QYFICPISLQIMKDP 22 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dP 22 (405)
..|.|++|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytd_A 11 KPYKCSECGKAFHRH 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred cCeECCCCCCeeCCh
Confidence 358898888877665
No 294
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.30 E-value=22 Score=17.94 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=8.1
Q ss_pred cccCcCCcccCCCc
Q 015513 9 YFICPISLQIMKDP 22 (405)
Q Consensus 9 ~~~Cpi~~~~m~dP 22 (405)
.|.|+.|+..|...
T Consensus 3 ~~~C~~C~k~f~~~ 16 (27)
T 2kvh_A 3 PFSCSLCPQRSRDF 16 (27)
T ss_dssp CEECSSSSCEESSH
T ss_pred CccCCCcChhhCCH
Confidence 35666666655543
No 295
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=24.21 E-value=1.8e+02 Score=23.24 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHH-HHHHHhhc--CChHHHHHHHHHHHHhcc
Q 015513 182 LIGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKE-MVKLLKEN--ISQQATKSGLHVLLQACP 258 (405)
Q Consensus 182 ~i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~-Lv~lL~~~--~~~~~~~~a~~aL~~L~~ 258 (405)
++..+.+-|.+ +.++..+..|..+|..+..+.......-+.+..++.. |++++... ....+++..+..|...+.
T Consensus 54 A~ral~KRl~~---~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 54 AVKALKKRISK---NYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHTT---CCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcC---CCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 66667766664 1577777888888888876654433222136678875 88888653 234789999999988775
Q ss_pred CC
Q 015513 259 MG 260 (405)
Q Consensus 259 ~~ 260 (405)
.-
T Consensus 131 ~F 132 (152)
T 3rru_A 131 GF 132 (152)
T ss_dssp CC
T ss_pred Hh
Confidence 33
No 296
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=24.14 E-value=95 Score=24.88 Aligned_cols=79 Identities=9% Similarity=0.097 Sum_probs=52.3
Q ss_pred chHHHHHHHHcc-ChhhhHHHHHHHHHhcccCCCHHHHHHHHhcChHHH-HHHHHhcc--CcHHHHHHHHHHHHHhhccc
Q 015513 314 AIAMVTKRLLRV-SPATNDRAVHILSSISKFSATYEVVLEMLSVGAVSK-LCMVTQAD--CEKYLKDRAKEILRLHSNVW 389 (405)
Q Consensus 314 ~i~~Lv~~l~~~-s~~~~e~a~~~L~~L~~~~~~~~~~~~~~~~G~v~~-Ll~ll~~~--~~~~~k~~A~~ll~~l~~~~ 389 (405)
++..|.+.|... ....+-.|+.+|-.+.++++.. ...++.....+.. |+.++... ....+|++...+++.-....
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~-fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F 132 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPS-FQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF 132 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHH-HHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHH-HHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 566677766422 3345667888888888887753 5555555455543 56666432 24579999999999888877
Q ss_pred CCCC
Q 015513 390 NNSP 393 (405)
Q Consensus 390 ~~~~ 393 (405)
++.|
T Consensus 133 ~~~p 136 (152)
T 3rru_A 133 PGGV 136 (152)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 6665
No 297
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=23.97 E-value=29 Score=25.12 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCcccCcCCcccCCC----cc-ccCCCCcccHHHHHHHHhcCCCCCCCCCCCC
Q 015513 7 PQYFICPISLQIMKD----PV-TAITGISYDRESIEKWLKTAKDTTCPVTKQP 54 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~d----Pv-~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~ 54 (405)
...+.|++|+.++.. |. =++-|..|+. --....||+|+..
T Consensus 33 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fed--------lPddW~CPvCga~ 77 (87)
T 1s24_A 33 YLKWICITCGHIYDEALGDEAEGFTPGTRFED--------IPDDWCCPDCGAT 77 (87)
T ss_dssp CCEEEETTTTEEEETTSCCTTTTCCSCCCGGG--------CCTTCCCSSSCCC
T ss_pred CceEECCCCCeEecCCcCCcccCcCCCCChhH--------CCCCCCCCCCCCC
Confidence 346899999977542 22 2345655422 1113479999875
No 298
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.96 E-value=42 Score=19.46 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=10.9
Q ss_pred CcccCcCCcccCCCc
Q 015513 8 QYFICPISLQIMKDP 22 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dP 22 (405)
..|.|++|+..|..+
T Consensus 9 k~~~C~~C~k~f~~~ 23 (44)
T 2emx_A 9 KPFGCSCCEKAFSSK 23 (44)
T ss_dssp CCEECSSSSCEESSH
T ss_pred cCccCCCCCcccCCH
Confidence 458888888777665
No 299
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.88 E-value=38 Score=23.55 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=22.0
Q ss_pred cCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 11 ICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 11 ~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.|+-|.+...+.++..-|.+|-..| ++|-.|+.+|..
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~C----------F~C~~C~~~L~~ 53 (79)
T 2cor_A 17 ICQKCHAIIDEQPLIFKNDPYHPDH----------FNCANCGKELTA 53 (79)
T ss_dssp BCTTTCCBCCSCCCCCSSSCCCTTT----------SBCSSSCCBCCT
T ss_pred CCccCCCEecceEEEECcceeCCCC----------CEeCCCCCccCC
Confidence 5666766666666555666665533 456666666643
No 300
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.81 E-value=69 Score=23.99 Aligned_cols=36 Identities=8% Similarity=0.036 Sum_probs=28.9
Q ss_pred CCcccCcCCcccCCC---ccccCCCCcccHHHHHHHHhc
Q 015513 7 PQYFICPISLQIMKD---PVTAITGISYDRESIEKWLKT 42 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~d---Pv~~~~g~~~~r~~I~~~~~~ 42 (405)
++-|.|..|...+.+ +.....|..||+.+..+-+..
T Consensus 28 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 28 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS
T ss_pred HhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc
Confidence 345999999999975 566678999999998887743
No 301
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.79 E-value=23 Score=18.16 Aligned_cols=14 Identities=21% Similarity=0.467 Sum_probs=8.6
Q ss_pred cccCcCCcccCCCc
Q 015513 9 YFICPISLQIMKDP 22 (405)
Q Consensus 9 ~~~Cpi~~~~m~dP 22 (405)
.|.|+.|+..|..+
T Consensus 3 ~~~C~~C~~~f~~~ 16 (30)
T 2m0d_A 3 PYQCDYCGRSFSDP 16 (30)
T ss_dssp CEECTTTCCEESCH
T ss_pred CccCCCCCcccCCH
Confidence 36677776666554
No 302
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=23.58 E-value=27 Score=23.71 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=20.5
Q ss_pred ccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 10 FICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 10 ~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
|.|++|+..|.+...+. .-+...... ....|+.|+..+.
T Consensus 2 ~~C~~C~~~f~~~~~l~-------~H~~~h~~~-~~~~C~~C~~~f~ 40 (82)
T 2kmk_A 2 FDCKICGKSFKRSSTLS-------THLLIHSDT-RPYPCQYCGKRFH 40 (82)
T ss_dssp EECSSSCCEESSHHHHH-------HHHHHHHTC-CCEECSSSCCEES
T ss_pred ccCCCCcccccCchhHH-------HHHHHcCCC-CCeeCCcCChhhC
Confidence 67888888776653321 111122211 2345788776654
No 303
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=23.51 E-value=62 Score=28.39 Aligned_cols=129 Identities=9% Similarity=0.028 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcCCCchhhHHhhcccchhHHHHHHH-HHhhhcCCCcHHhHHHHHHHHHHHHhhhc-cchhhhcccHHHHH
Q 015513 154 LEEALRILSLVWSPSNENKALVDHHNQDLIGALMW-VLQWENNDRHVAVKTSAMIVLKMVLELAS-KGLLESTLNLDFFK 231 (405)
Q Consensus 154 ~e~A~~~L~~L~~~~~~~~~~i~~~g~~~i~~Lv~-lL~~~~~~~~~~~~~~A~~~L~~L~~~~~-~~~~i~~~~~g~i~ 231 (405)
+--++.+++.+..+.+.. + .+..++. .+.+ .++..+.-+++++.|+-.+.. .+..+. ......
T Consensus 71 ~fP~lDllRl~~~~~~~~-------~--~l~~~l~~~~~~----~~~~~~ml~lR~l~NlF~~~~~g~~l~~--~~~~~~ 135 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS-------S--DIKDYIEEGLGN----KNITLTMLTVRILVNCFNNENWGVKLLE--SNQVYK 135 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG-------G--GGHHHHHHHTTC----SSHHHHHHHHHHHHHHTTCTTTHHHHHT--SHHHHT
T ss_pred cchHHHHHHHHHcCCchH-------H--HHHHHHHHhcCC----CchhHHHHHHHHHHHcccCCchHHHHHh--cchhHH
Confidence 455777777665544221 1 2333332 2333 577888999999999988777 444443 445556
Q ss_pred HHHHHHhhc-------CChHHHHHHHHHHHHhccCC-chhHHHHhhcchHHHHHHhhc----C----CCCCcHHHHHHHH
Q 015513 232 EMVKLLKEN-------ISQQATKSGLHVLLQACPMG-GNRVKITEANAVFELIELELT----K----PEKSTTELIFNLL 295 (405)
Q Consensus 232 ~Lv~lL~~~-------~~~~~~~~a~~aL~~L~~~~-~n~~~~v~~g~v~~Lv~lL~~----~----~~~~~~e~a~~~L 295 (405)
.+++.+.+. .+...+-+++.+++|++..- .++. +......+++.+.. . .+.+..-.++.+|
T Consensus 136 ~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAl 212 (253)
T 3gae_A 136 SIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAY 212 (253)
T ss_dssp THHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHH
Confidence 666655321 14567778889999998721 1111 12344556666652 1 1345566677777
Q ss_pred HHHhc
Q 015513 296 AQLCS 300 (405)
Q Consensus 296 ~~L~~ 300 (405)
++|..
T Consensus 213 GtL~~ 217 (253)
T 3gae_A 213 GNLAT 217 (253)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77764
No 304
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.45 E-value=53 Score=19.22 Aligned_cols=17 Identities=6% Similarity=0.198 Sum_probs=12.3
Q ss_pred CcccCcCCcccCCCccc
Q 015513 8 QYFICPISLQIMKDPVT 24 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~ 24 (405)
..|.|++|+..|...-.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (46)
T 2yu8_A 11 KPYKCNECGKVFTQNSH 27 (46)
T ss_dssp SSEECSSSCCEESSSHH
T ss_pred CCeECCcCCchhCCHHH
Confidence 45888888887776543
No 305
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.27 E-value=32 Score=24.05 Aligned_cols=38 Identities=11% Similarity=0.026 Sum_probs=19.0
Q ss_pred cccCcCCcccCC-CccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 9 YFICPISLQIMK-DPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 9 ~~~Cpi~~~~m~-dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
.-.|+-|.+... ...+..-|..|-+. .+.|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~----------CF~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVS----------CFKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTT----------TCBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEECCcccccc----------cCCcCcCCCCcC
Confidence 346777776554 23333344444332 245666666654
No 306
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.09 E-value=39 Score=19.87 Aligned_cols=15 Identities=7% Similarity=0.253 Sum_probs=10.9
Q ss_pred CcccCcCCcccCCCc
Q 015513 8 QYFICPISLQIMKDP 22 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dP 22 (405)
..|.|++|+..|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2ytk_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCEeCCcCCCccCCH
Confidence 458888888777654
No 307
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=22.91 E-value=31 Score=23.93 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=8.3
Q ss_pred cccCc--CCcccCCCc
Q 015513 9 YFICP--ISLQIMKDP 22 (405)
Q Consensus 9 ~~~Cp--i~~~~m~dP 22 (405)
.|.|| .|...|...
T Consensus 4 ~~~C~~~~C~~~f~~~ 19 (90)
T 1a1h_A 4 PYACPVESCDRRFSQS 19 (90)
T ss_dssp CEECCSSSCCCEESSH
T ss_pred ceECCCCCCCCccCCH
Confidence 46676 366666554
No 308
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.87 E-value=42 Score=23.87 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=27.2
Q ss_pred cccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 9 YFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 9 ~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.-.|.-|.+...+.++..-|..|-..| +.|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~C----------F~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPEC----------FVCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTT----------CCCSSSCCCTTT
T ss_pred CCCcccCCCEecccEEEECCceECccC----------CEecCCCCCCCC
Confidence 357888888888777666676664433 577788877754
No 309
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.79 E-value=33 Score=18.71 Aligned_cols=15 Identities=13% Similarity=0.343 Sum_probs=10.0
Q ss_pred CcccCcCCcccCCCc
Q 015513 8 QYFICPISLQIMKDP 22 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dP 22 (405)
..|.|++|+..|..+
T Consensus 8 ~~~~C~~C~k~f~~~ 22 (36)
T 2elr_A 8 KTHLCDMCGKKFKSK 22 (36)
T ss_dssp SSCBCTTTCCBCSSH
T ss_pred CCeecCcCCCCcCch
Confidence 347787777766654
No 310
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.57 E-value=40 Score=19.77 Aligned_cols=15 Identities=7% Similarity=0.009 Sum_probs=11.0
Q ss_pred CcccCcCCcccCCCc
Q 015513 8 QYFICPISLQIMKDP 22 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dP 22 (405)
..|.|++|+..|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2emm_A 11 RPHKCNECGKSFIQS 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeeCCCCChhhCCH
Confidence 358888888877664
No 311
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=22.16 E-value=27 Score=17.77 Aligned_cols=13 Identities=23% Similarity=0.508 Sum_probs=8.8
Q ss_pred ccCcCCcccCCCc
Q 015513 10 FICPISLQIMKDP 22 (405)
Q Consensus 10 ~~Cpi~~~~m~dP 22 (405)
|.|++|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 1rik_A 3 FACPECPKRFMRS 15 (29)
T ss_dssp EECSSSSCEESCS
T ss_pred ccCCCCCchhCCH
Confidence 6677777766554
No 312
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.90 E-value=36 Score=17.40 Aligned_cols=13 Identities=8% Similarity=0.393 Sum_probs=8.4
Q ss_pred ccCcCCcccCCCc
Q 015513 10 FICPISLQIMKDP 22 (405)
Q Consensus 10 ~~Cpi~~~~m~dP 22 (405)
|.|+.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1paa_A 3 YACGLCNRAFTRR 15 (30)
T ss_dssp SBCTTTCCBCSSS
T ss_pred cCCcccCcccCCh
Confidence 6677777666544
No 313
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.88 E-value=47 Score=22.27 Aligned_cols=21 Identities=10% Similarity=0.140 Sum_probs=10.0
Q ss_pred cCcCCcccCC--CccccCCCCcc
Q 015513 11 ICPISLQIMK--DPVTAITGISY 31 (405)
Q Consensus 11 ~Cpi~~~~m~--dPv~~~~g~~~ 31 (405)
.|+-|++... +.++..-|.+|
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~ 29 (72)
T 1wyh_A 7 GCSACGETVMPGSRKLEYGGQTW 29 (72)
T ss_dssp BCSSSCCBCCSSSCEECSTTCCE
T ss_pred CCccCCCccccCccEEEECcccc
Confidence 4555555554 34444444444
No 314
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=21.76 E-value=34 Score=22.66 Aligned_cols=42 Identities=14% Similarity=0.289 Sum_probs=23.3
Q ss_pred CcccCcC--CcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 8 QYFICPI--SLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 8 ~~~~Cpi--~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
..|.||+ |+..|...-.+. .-+...... ....|+.|+..+..
T Consensus 18 ~~~~C~~~~C~k~f~~~~~l~-------~H~~~h~~~-~~~~C~~C~~~f~~ 61 (73)
T 1f2i_G 18 RPYACPVESCDRRFSRSDELT-------RHIRIHTGQ-KPFQCRICMRNFSR 61 (73)
T ss_dssp CCEECSSTTBCCEESSHHHHH-------HHHHHHHCC-CCEECTTTCCEESC
T ss_pred CccCCcCCCCCCccCCHHHHH-------HHHHhhCCC-CCeECCCCCchhCC
Confidence 4488984 877766543221 112222222 24579999887754
No 315
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.52 E-value=43 Score=23.13 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=23.2
Q ss_pred CcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPL 55 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~ 55 (405)
..-.|+-|.+...+.++..-|..|-..| +.|-.|+.+|
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C----------F~C~~C~~~L 51 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPEC----------YVCTDCGTNL 51 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTT----------TSCSSSCCCH
T ss_pred CCCccccCCCCccCcEEEECcceeCcCc----------CeeCCCCCCC
Confidence 3457777777777666656665554432 4566666655
No 316
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.40 E-value=25 Score=17.82 Aligned_cols=13 Identities=8% Similarity=0.135 Sum_probs=7.3
Q ss_pred ccCcCCcccCCCc
Q 015513 10 FICPISLQIMKDP 22 (405)
Q Consensus 10 ~~Cpi~~~~m~dP 22 (405)
|.|++|+..|..+
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2m0f_A 3 LKCRECGKQFTTS 15 (29)
T ss_dssp EECTTTSCEESCH
T ss_pred ccCCCCCCccCCh
Confidence 5566666555443
No 317
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.84 E-value=20 Score=17.93 Aligned_cols=13 Identities=8% Similarity=0.329 Sum_probs=7.5
Q ss_pred ccCcCCcccCCCc
Q 015513 10 FICPISLQIMKDP 22 (405)
Q Consensus 10 ~~Cpi~~~~m~dP 22 (405)
|.|++|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 5566666655544
No 318
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=21.16 E-value=9.8 Score=34.79 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=29.3
Q ss_pred CcccCcCCcccCCCcccc----CCC--CcccHHHHHHHHhcCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKDPVTA----ITG--ISYDRESIEKWLKTAKDTTCPVTKQP 54 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~----~~g--~~~~r~~I~~~~~~~~~~~cP~~~~~ 54 (405)
..=.||+|+..-.--|+. ..| +-+|--|=.+|-- ....||.|+..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~--~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY--VRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC--CTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee--cCcCCcCCCCC
Confidence 346899999765544544 256 4567777667732 24579999875
No 319
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=21.09 E-value=36 Score=24.45 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=24.7
Q ss_pred CCCCCcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCC
Q 015513 4 IEVPQYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLP 56 (405)
Q Consensus 4 ~~~~~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~ 56 (405)
..+|..|.||.|+.. +-|.. +.++.. ..+...|-.|++.+.
T Consensus 18 ~~L~t~F~CPfCnh~--~sV~v----kidk~~------~~g~l~C~~Cg~~~~ 58 (85)
T 1wii_A 18 GTLETQFTCPFCNHE--KSCDV----KMDRAR------NTGVISCTVCLEEFQ 58 (85)
T ss_dssp CCCSSCCCCTTTCCS--SCEEE----EEETTT------TEEEEEESSSCCEEE
T ss_pred CCCCCeEcCCCCCCC--CeEEE----EEEccC------CEEEEEcccCCCeEE
Confidence 467899999999973 23322 233311 113457999988663
No 320
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.90 E-value=79 Score=21.04 Aligned_cols=14 Identities=14% Similarity=0.264 Sum_probs=8.7
Q ss_pred cccCcC--CcccCCCc
Q 015513 9 YFICPI--SLQIMKDP 22 (405)
Q Consensus 9 ~~~Cpi--~~~~m~dP 22 (405)
.|.|+. |...|...
T Consensus 7 ~~~C~~~~C~~~f~~~ 22 (79)
T 2dlk_A 7 GMPCDFPGCGRIFSNR 22 (79)
T ss_dssp SEECSSTTTCCEESSH
T ss_pred CccCCCCCCcCccCCH
Confidence 466665 77766554
No 321
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=20.85 E-value=4.2e+02 Score=23.07 Aligned_cols=101 Identities=9% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcCCCcHHhHHHHHHHHHHHHhhhccchhhhcccHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCch
Q 015513 183 IGALMWVLQWENNDRHVAVKTSAMIVLKMVLELASKGLLESTLNLDFFKEMVKLLKENISQQATKSGLHVLLQACPMGGN 262 (405)
Q Consensus 183 i~~Lv~lL~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L~~~~~n 262 (405)
+-.|+.-... .+.+.+.....-+..|....+.. ..- .+++.++.+..+. +.++++..+..|...+ .
T Consensus 17 v~~lln~A~~----~~~~~kl~~L~qa~el~~~~dp~-ll~----~~l~~il~~~~~~-~~~vrk~~~~Fi~e~~----~ 82 (257)
T 3gs3_A 17 VVDWCNELVI----ASPSTKCELLAKVQETVLGSCAE-LAE----EFLESVLSLAHDS-NMEVRKQVVAFVEQVC----K 82 (257)
T ss_dssp HHHHHHHHTT----CCHHHHHHHHHHHHHHHTTTTGG-GHH----HHHHHHHGGGGCS-CHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHhhh----cCcHHHHHHHHHHHHHHHccCHh-HHH----HHHHHHHHhccCC-hHHHHHHHHHHHHHHH----H
Q ss_pred hHHHHhhcchHHHHHHhhcCCCCCcHHHHHHHHHHH
Q 015513 263 RVKITEANAVFELIELELTKPEKSTTELIFNLLAQL 298 (405)
Q Consensus 263 ~~~~v~~g~v~~Lv~lL~~~~~~~~~e~a~~~L~~L 298 (405)
++.-.-..+++.|..+|.+. +..+...+..+..++
T Consensus 83 ~k~~l~~~~l~~L~~Ll~d~-d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 83 VKVELLPHVINVVSMLLRDN-SAQVIKRVIQACGSI 117 (257)
T ss_dssp HCGGGHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHH
No 322
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=20.69 E-value=47 Score=21.71 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=10.3
Q ss_pred CCCcccCcCCcccC
Q 015513 6 VPQYFICPISLQIM 19 (405)
Q Consensus 6 ~~~~~~Cpi~~~~m 19 (405)
+-+-+.||.|+..+
T Consensus 7 lL~iL~CP~c~~~L 20 (56)
T 2kpi_A 7 LLEILACPACHAPL 20 (56)
T ss_dssp CTTSCCCSSSCSCE
T ss_pred HHhheeCCCCCCcc
Confidence 45567999999843
No 323
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.37 E-value=24 Score=24.92 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=12.7
Q ss_pred CCcccCcCCcccCCCcc
Q 015513 7 PQYFICPISLQIMKDPV 23 (405)
Q Consensus 7 ~~~~~Cpi~~~~m~dPv 23 (405)
...|.|++|...|...-
T Consensus 5 ~~~~~C~~C~~~f~~~~ 21 (95)
T 2yt9_A 5 SSGVACEICGKIFRDVY 21 (95)
T ss_dssp CSCEECSSSCCEESSSH
T ss_pred CCCeECCCCCCccCChH
Confidence 35688999988887653
No 324
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.36 E-value=22 Score=23.50 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=24.2
Q ss_pred CcccCcCCcccCCCccccCCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 8 QYFICPISLQIMKDPVTAITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 8 ~~~~Cpi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
..|.|++|+..|...-.+.- . ....|+.|+..+..
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~--------------~-~~~~C~~C~~~f~~ 51 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSR--------------R-KTPMCEKCRKDSCQ 51 (73)
T ss_dssp SEEECSSSCCEEECCCCCCC--------------S-SSCCCHHHHHTCSC
T ss_pred CCeeCCcccchhCCHHHhCc--------------C-CCCCCCCCChhhcC
Confidence 45899999998887655432 2 24678888777654
No 325
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=20.27 E-value=37 Score=29.72 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=21.7
Q ss_pred CCCCcccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015513 26 ITGISYDRESIEKWLKTAKDTTCPVTKQPLPR 57 (405)
Q Consensus 26 ~~g~~~~r~~I~~~~~~~~~~~cP~~~~~~~~ 57 (405)
.||+.|...-+.+.+.......||.|+..+.+
T Consensus 126 ~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP 157 (246)
T 1yc5_A 126 RCEKKYTVEDVIKKLESSDVPLCDDCNSLIRP 157 (246)
T ss_dssp TTCCEEEHHHHHHHTTTCSSCBCTTTCCBEEE
T ss_pred CCCCCCcHHHHHHHhccCCCCCCCCCCCccCc
Confidence 58888888766655443224689999887643
No 326
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.23 E-value=96 Score=21.16 Aligned_cols=20 Identities=5% Similarity=-0.057 Sum_probs=9.0
Q ss_pred cCcCCcccCCCccccCCCCc
Q 015513 11 ICPISLQIMKDPVTAITGIS 30 (405)
Q Consensus 11 ~Cpi~~~~m~dPv~~~~g~~ 30 (405)
.|+-|.+...+.++..-|.+
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~ 36 (80)
T 1x3h_A 17 KCGGCNRPVLENYLSAMDTV 36 (80)
T ss_dssp BCTTTCCBCCSSCEEETTEE
T ss_pred ccccCCCeecceeEEECCCe
Confidence 45555554444443333333
Done!