Query 015514
Match_columns 405
No_of_seqs 89 out of 91
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 07:01:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07168 Ureide_permease: Urei 100.0 3E-142 6E-147 1037.9 24.0 333 14-355 1-336 (336)
2 PRK13499 rhamnose-proton sympo 100.0 1.8E-46 3.8E-51 371.8 15.2 318 5-400 3-342 (345)
3 PF06800 Sugar_transport: Suga 99.9 1.5E-23 3.3E-28 202.8 12.8 247 38-388 12-262 (269)
4 TIGR00776 RhaT RhaT L-rhamnose 99.8 3.4E-20 7.3E-25 177.5 11.5 265 10-380 2-271 (290)
5 PF06379 RhaT: L-rhamnose-prot 99.3 1.4E-10 3E-15 116.4 16.2 313 6-395 4-336 (344)
6 COG4975 GlcU Putative glucose 98.9 2E-10 4.3E-15 111.8 -0.3 276 11-397 4-283 (288)
7 PF07857 DUF1632: CEO family ( 98.5 1.9E-07 4.2E-12 90.6 5.8 130 11-160 2-136 (254)
8 TIGR00776 RhaT RhaT L-rhamnose 97.7 0.00015 3.3E-09 70.1 9.5 112 239-376 2-115 (290)
9 PRK13499 rhamnose-proton sympo 97.7 0.00027 5.8E-09 71.7 10.1 143 235-399 4-153 (345)
10 TIGR03340 phn_DUF6 phosphonate 97.4 0.0012 2.7E-08 62.6 10.7 259 10-372 2-262 (281)
11 TIGR00950 2A78 Carboxylate/Ami 97.1 0.012 2.7E-07 54.0 13.6 237 23-371 4-242 (260)
12 PRK15430 putative chlorampheni 96.5 0.1 2.2E-06 50.3 14.9 138 5-154 4-141 (296)
13 PF06800 Sugar_transport: Suga 96.0 0.01 2.2E-07 58.7 5.5 75 321-397 44-120 (269)
14 PF07857 DUF1632: CEO family ( 96.0 0.021 4.6E-07 56.0 7.6 82 281-379 31-115 (254)
15 PRK10532 threonine and homoser 95.6 0.46 1E-05 45.7 14.6 93 6-114 9-101 (293)
16 PRK11689 aromatic amino acid e 95.5 0.33 7.2E-06 46.8 13.3 46 327-372 220-266 (295)
17 COG0697 RhaT Permeases of the 93.8 2.7 5.9E-05 38.3 14.3 257 9-374 7-268 (292)
18 PRK11272 putative DMT superfam 92.6 3.6 7.7E-05 39.6 13.7 115 237-372 149-264 (292)
19 PRK11453 O-acetylserine/cystei 92.4 5.5 0.00012 38.5 14.7 38 11-48 6-43 (299)
20 TIGR00688 rarD rarD protein. T 90.1 7.6 0.00017 36.3 12.9 115 238-371 2-120 (256)
21 PF00892 EamA: EamA-like trans 88.8 0.14 3.1E-06 40.9 0.3 122 19-155 1-123 (126)
22 PRK15430 putative chlorampheni 88.5 4.4 9.4E-05 39.2 10.2 117 235-371 5-123 (296)
23 PF00892 EamA: EamA-like trans 88.3 1.4 3E-05 35.2 5.7 49 325-373 56-106 (126)
24 TIGR00688 rarD rarD protein. T 87.1 12 0.00025 35.1 11.9 131 10-148 3-134 (256)
25 PF13536 EmrE: Multidrug resis 85.0 3.8 8.2E-05 34.2 6.8 62 313-378 26-89 (113)
26 TIGR00817 tpt Tpt phosphate/ph 81.0 13 0.00029 35.7 9.7 39 334-372 233-272 (302)
27 PLN00411 nodulin MtN21 family 73.0 50 0.0011 33.7 11.7 131 237-389 188-320 (358)
28 COG4975 GlcU Putative glucose 65.5 24 0.00052 35.8 7.4 73 83-158 208-285 (288)
29 TIGR03340 phn_DUF6 phosphonate 63.7 73 0.0016 30.5 10.1 50 323-372 64-114 (281)
30 COG0697 RhaT Permeases of the 62.1 84 0.0018 28.6 9.8 117 236-374 5-124 (292)
31 PF06379 RhaT: L-rhamnose-prot 60.6 30 0.00066 36.0 7.3 147 234-404 3-158 (344)
32 PF11028 DUF2723: Protein of u 59.6 60 0.0013 30.5 8.6 99 236-377 78-176 (178)
33 PF06609 TRI12: Fungal trichot 54.5 1.6E+02 0.0035 32.7 12.0 206 124-396 98-326 (599)
34 PRK11102 bicyclomycin/multidru 51.4 2.1E+02 0.0045 27.2 10.9 22 281-302 147-168 (377)
35 PRK11652 emrD multidrug resist 48.2 2.5E+02 0.0054 27.2 11.0 30 129-159 64-93 (394)
36 PF09769 ApoO: Apolipoprotein 41.5 9.3 0.0002 34.4 0.2 30 127-160 82-111 (158)
37 PTZ00343 triose or hexose phos 39.5 65 0.0014 32.4 5.8 128 236-372 192-327 (350)
38 PRK11056 hypothetical protein; 37.5 46 0.001 30.1 3.8 15 236-250 8-22 (120)
39 PRK10263 DNA translocase FtsK; 33.5 76 0.0017 38.5 5.8 84 265-353 60-153 (1355)
40 COG2832 Uncharacterized protei 33.0 38 0.00082 30.6 2.6 59 274-339 24-90 (119)
41 PF01566 Nramp: Natural resist 32.7 1.8E+02 0.0039 29.1 7.7 102 293-397 27-138 (358)
42 PRK13460 F0F1 ATP synthase sub 31.6 38 0.00083 30.9 2.5 36 269-305 6-42 (173)
43 COG2391 Predicted transporter 31.6 80 0.0017 29.8 4.7 44 325-368 105-148 (198)
44 PF11712 Vma12: Endoplasmic re 31.6 89 0.0019 27.8 4.8 38 358-395 88-126 (142)
45 COG1295 Rbn Ribonuclease BN fa 31.4 1.6E+02 0.0034 29.4 7.0 121 236-368 147-270 (303)
46 PRK10213 nepI ribonucleoside t 30.8 5.4E+02 0.012 25.5 11.3 27 134-160 80-106 (394)
47 PF13347 MFS_2: MFS/sugar tran 30.1 4.5E+02 0.0098 26.2 9.9 89 241-337 147-242 (428)
48 PF11990 DUF3487: Protein of u 30.0 42 0.00091 29.9 2.4 33 9-46 57-89 (121)
49 PF09925 DUF2157: Predicted me 28.0 2.4E+02 0.0053 24.9 6.9 74 321-397 33-109 (145)
50 PRK03633 putative MFS family t 27.9 4.6E+02 0.01 25.5 9.4 26 49-74 11-36 (381)
51 TIGR00817 tpt Tpt phosphate/ph 27.3 2.7E+02 0.0058 26.8 7.6 62 93-157 230-292 (302)
52 KOG2736 Presenilin [Signal tra 26.1 1.8E+02 0.004 31.1 6.5 62 222-290 313-392 (406)
53 PF03151 TPT: Triose-phosphate 26.1 4E+02 0.0087 22.5 8.0 126 239-372 1-132 (153)
54 PF11028 DUF2723: Protein of u 23.9 2.1E+02 0.0046 26.9 6.0 59 321-383 81-139 (178)
55 PRK11551 putative 3-hydroxyphe 23.9 5.9E+02 0.013 24.7 9.2 29 129-158 71-99 (406)
56 PF05653 Mg_trans_NIPA: Magnes 23.2 2.7E+02 0.0059 27.9 7.0 108 286-403 14-126 (300)
57 PRK10483 tryptophan permease; 21.0 3.6E+02 0.0078 28.6 7.6 88 309-398 72-172 (414)
58 PF01226 Form_Nir_trans: Forma 20.9 6.8E+02 0.015 24.5 9.1 83 233-320 17-105 (250)
59 PF11676 DUF3272: Protein of u 20.9 58 0.0012 26.4 1.4 25 351-375 20-45 (61)
60 TIGR01625 YidE_YbjL_dupl AspT/ 20.2 1.8E+02 0.0039 26.7 4.6 39 38-76 42-81 (154)
61 PRK13454 F0F1 ATP synthase sub 20.1 76 0.0017 29.4 2.2 37 269-306 19-58 (181)
No 1
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=100.00 E-value=2.6e-142 Score=1037.86 Aligned_cols=333 Identities=66% Similarity=1.094 Sum_probs=314.3
Q ss_pred HHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccC---CCCcchhhhhhhccCCchhHHHHHHh
Q 015514 14 MLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFG---DARPNFVYQLTELKDNWPSVLFAMAG 90 (405)
Q Consensus 14 m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG---~~~~~Fl~qL~Q~~~~~~sv~~AmaG 90 (405)
|++||+|||||||+|||+|||||+||||||||+|||+|+|+++|||+||+| +++|||++||+| |||||+++||+|
T Consensus 1 M~itmlcwGSW~nt~kL~~r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q--~n~~sv~~A~aG 78 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAERRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQ--ANWPSVLFAMAG 78 (336)
T ss_pred CeeehhhhcChHHHHHHHHhcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhc--CChHHHHHHHHh
Confidence 789999999999999999999999999999999999999999999999999 567999999999 999999999999
Q ss_pred hHHHhhhHHHHHHHHHHhccceeeeecceeEEEEcceeeecccCCCCceeeecchhHHHHHHHHHhhhhhccchhchHHh
Q 015514 91 GVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAK 170 (405)
Q Consensus 91 Gvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~NYfld~~~n~a~iLF~GV~cflvAi~l~a~ah~sna~d~~~K 170 (405)
||+||+|||++|||||++||||||||++|||||+||++|||+|||+|||+||||||+||+||||+++++|+||++|||+|
T Consensus 79 GvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfld~~~n~a~iLF~GV~cf~iAI~lga~ah~sn~~d~~~k 158 (336)
T PF07168_consen 79 GVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFLDPKINRAEILFPGVACFLIAIILGAAAHKSNAADNKAK 158 (336)
T ss_pred hHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeeccCCCCCceEEEccHHHHHHHHHHHHHHHhcchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCccccCCccCCCCCCCCCCCCCCCCcccccccccchhhHhhhhhcchhcccccccchhhHHHHHHHHH
Q 015514 171 LNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCF 250 (405)
Q Consensus 171 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~i~~~AGv~~ 250 (405)
+++++++++..+.++. +...+.++||+|+++ .+|+|+|||+||+|||+||||||+||++++|+.|+++||+|+
T Consensus 159 l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~gta~~l~~le~~rsikv~g~~~~~Gl~i~~faG~c~ 231 (336)
T PF07168_consen 159 LKNFPNSYSRSTVSSA-----EMGFELESKDLENGE--AEKAKAGTAEFLIELENKRSIKVFGSSTLIGLGIAFFAGLCF 231 (336)
T ss_pred hhcCCCcccccccccc-----ccccccCccchhcCC--cccccccHHHHHHHHHhhhhhhhccccceeeehHHHHHhHHH
Confidence 9876554433333221 222223666777665 789999999999999999999999999999999999999999
Q ss_pred hhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhccCCcchhHHhhhH
Q 015514 251 SLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGL 330 (405)
Q Consensus 251 s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~d~~gr~~a~LaG~ 330 (405)
|+|||+||+|||||||||+||||||+|||||||||++||++++++|++|||||++|.||||+++|++||+||.|++|||+
T Consensus 232 slFSPafNlAtNDqwhtL~~gvP~L~VYtafFyFs~s~fv~~~~lni~~Ly~P~~g~p~Ssl~ay~~D~~gR~wa~lAG~ 311 (336)
T PF07168_consen 232 SLFSPAFNLATNDQWHTLKPGVPHLVVYTAFFYFSLSCFVVAIILNIWFLYRPVLGVPKSSLKAYLKDWNGRGWAFLAGL 311 (336)
T ss_pred HhcCchhhccccccccccCCCCCceEEEeehHHHHHHHHHHHHHHHhhheeccccCCChhhHHHHhhccCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhchhhhhhhcccchhhHHhhhhh
Q 015514 331 LCGFGNGLQFMGGQAAGYAAADAVQ 355 (405)
Q Consensus 331 icg~Gn~lqfmggqaAGyA~s~avQ 355 (405)
+||+||+||||||||||||+||+||
T Consensus 312 lCg~GNglQFmgGQAaGYAaADaVQ 336 (336)
T PF07168_consen 312 LCGFGNGLQFMGGQAAGYAAADAVQ 336 (336)
T ss_pred HHhCCceeeecccchhhhhhhhhcC
Confidence 9999999999999999999999999
No 2
>PRK13499 rhamnose-proton symporter; Provisional
Probab=100.00 E-value=1.8e-46 Score=371.79 Aligned_cols=318 Identities=15% Similarity=0.151 Sum_probs=277.3
Q ss_pred cchhhHHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhH
Q 015514 5 ESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSV 84 (405)
Q Consensus 5 es~~~AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv 84 (405)
++....+.+|+++++|||||.+.+|. -|+|| .|.| || +.++ +..+++++|+|+++. |+|.++++| .+...+
T Consensus 3 ~~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~-wE~~-W~-v~gi-~~wl~~~~~~g~~~~--~~f~~~~~~--~~~~~~ 73 (345)
T PRK13499 3 NAIILGIIWHLIGGASSGSFYAPFKK-VKKWS-WETM-WS-VGGI-FSWLILPWLIAALLL--PDFWAYYSS--FSGSTL 73 (345)
T ss_pred chhHHHHHHHHHHHHHhhcccccccc-cCCCc-hhHH-HH-HHHH-HHHHHHHHHHHHHHh--hhHHHHHHh--cCHHHH
Confidence 35667899999999999999999999 77899 7888 99 5555 999999999999998 999999999 999999
Q ss_pred HHHHHhhHHHhhhHHHHHHHHHHhccceeeeecceeEEEEccee---------eecccCCCCceeeecchhHHHHHHHHH
Q 015514 85 LFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTF---------NYFLDDKINKAEILFPGIACFLVAVGL 155 (405)
Q Consensus 85 ~~AmaGGvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~---------NYfld~~~n~a~iLF~GV~cflvAi~l 155 (405)
.+++++|+++++||+..-.++.+.|+|+++||+.|+++|+||.+ ||+..+++ .+++.||++++++|++
T Consensus 74 ~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g---~~~~~gv~liliGi~l 150 (345)
T PRK13499 74 LPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGG---RMTLLGVLVALIGVAI 150 (345)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchH---HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 99999988 4599999999999999
Q ss_pred hhhhhccchhchHHhhcCCCCCCCCCCCccccCCccCCCCCCCCCCCCCCCCcccccccccchhhHhhhhhcchhccccc
Q 015514 156 GSAVHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKS 235 (405)
Q Consensus 156 ~a~ah~sna~d~~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gta~~l~~le~~rsikv~~~~ 235 (405)
.+.|+ .|.++ + . +++| |+ +++
T Consensus 151 ~s~Ag--------~~k~~--~-~---------------------~~~~--------------------~~-------~~~ 171 (345)
T PRK13499 151 VGRAG--------QLKER--K-M---------------------GIKK--------------------AE-------EFN 171 (345)
T ss_pred HHHhh--------hhccc--c-c---------------------cccc--------------------cc-------ccc
Confidence 99999 23321 0 0 0000 00 235
Q ss_pred ccchhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHH---HHHHHHHHHHHHHHhcCCCCCCCccch
Q 015514 236 ILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFS---VSGFVIALILNIRFLFSPILDTHRSSF 312 (405)
Q Consensus 236 ~~~Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fs---vg~f~~~~i~N~~~m~~P~~g~p~ss~ 312 (405)
..||+++++++|+.++.|+++++.++..+.. .|..+..++|+++.-+. +|.|++|+++|++.|+| + ++.+.
T Consensus 172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~~--a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k---~-~~~~~ 245 (345)
T PRK13499 172 LKKGLILAVMSGIFSACFSFAMDAGKPMHEA--AAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAK---N-KDLSL 245 (345)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhhccchhhh--hhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh---C-CCccc
Confidence 7899999999999999999999999863322 35567788999999999 99999999999999998 3 33566
Q ss_pred hhhhcc-----CCcchhHHhhhHHHhchhhhhhhcccch---hhHHhhh-hhhhh-HHHHHHHHhhhhhccCCCcchhHH
Q 015514 313 KAYLND-----WNGRGWALLAGLLCGFGNGLQFMGGQAA---GYAAADA-VQALP-LVSTFWGILLFGEYRKSSRRTYIL 382 (405)
Q Consensus 313 ~aY~~d-----~~gr~~a~LaG~icg~Gn~lqfmggqaA---GyA~s~a-vQa~p-lVst~WGv~lf~Efr~ss~~t~~L 382 (405)
.+|.+. ++.|+.++|+|++|++||-+.+|+.+++ +.++||. .|+++ ++|++||+ +|||+|++|||+.++
T Consensus 246 ~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~ 324 (345)
T PRK13499 246 KADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRV 324 (345)
T ss_pred chhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhH
Confidence 677775 5799999999999999999999999877 6777887 77777 99999999 599999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 015514 383 LVSMLSMFIVAVAVLMAS 400 (405)
Q Consensus 383 L~~Ml~~Fi~gv~ll~as 400 (405)
+..|++++++|..++...
T Consensus 325 l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 325 LSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999998754
No 3
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.90 E-value=1.5e-23 Score=202.83 Aligned_cols=247 Identities=22% Similarity=0.294 Sum_probs=186.9
Q ss_pred CcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHHHHHHhhHHHhhhHHHHHHHHHHhccceeeeec
Q 015514 38 PQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS 117 (405)
Q Consensus 38 ~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~~AmaGGvv~nlgNl~lq~a~a~aGlSVa~pi~ 117 (405)
|..-=+--++|.+++|++..+... |.+- .|..+++.++++|+.+++||+....+....|+|.|+|++
T Consensus 12 ~~~Q~lG~t~Gali~alv~~~~~~------p~~~-------~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiS 78 (269)
T PF06800_consen 12 PANQILGTTIGALIFALVVFLFRQ------PAFS-------MSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPIS 78 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC------CCcc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccc
Confidence 454455566777777777665421 1110 234799999999999999999999999999999999999
Q ss_pred ceeEEEEcceeee--cccCCCCc-eeeecchhHHHHHHHHHhhhhhccchhchHHhhcCCCCCCCCCCCccccCCccCCC
Q 015514 118 SSITVVIGSTFNY--FLDDKINK-AEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCETL 194 (405)
Q Consensus 118 ~slavViGt~~NY--fld~~~n~-a~iLF~GV~cflvAi~l~a~ah~sna~d~~~Kl~~~~~~~~~~~~~~~~~~~~~~~ 194 (405)
.++.+|..+.+++ |.+-+..+ ..+.+.++.++++.+++.+... |.++ +
T Consensus 79 tg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~---------~~~~----~---------------- 129 (269)
T PF06800_consen 79 TGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQD---------KKSD----K---------------- 129 (269)
T ss_pred hhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccc---------cccc----c----------------
Confidence 9999999999886 56665533 2334667777777777775522 1100 0
Q ss_pred CCCCCCCCCCCCCcccccccccchhhHhhhhhcchhcccccccchhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCc
Q 015514 195 PENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPH 274 (405)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~ 274 (405)
+++ .++..||+...+++.+-+ .+|+.+..+ .|
T Consensus 130 ------~~~-----------------------------~~~~~kgi~~Ll~stigy-~~Y~~~~~~------------~~ 161 (269)
T PF06800_consen 130 ------SSS-----------------------------KSNMKKGILALLISTIGY-WIYSVIPKA------------FH 161 (269)
T ss_pred ------ccc-----------------------------ccchhhHHHHHHHHHHHH-HHHHHHHHh------------cC
Confidence 000 224578888877776665 567777665 45
Q ss_pred eeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhccCCcchhHHhhhHHHhchhhhhhhcccchhhHHhhh-
Q 015514 275 LIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADA- 353 (405)
Q Consensus 275 Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~d~~gr~~a~LaG~icg~Gn~lqfmggqaAGyA~s~a- 353 (405)
.++|+++|=.|+|.++.++++|... ++|.-. +-+...+++|++|++||-+.+++.+..|+|+||.
T Consensus 162 ~~~~~~~lPqaiGm~i~a~i~~~~~-~~~~~~-------------k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~l 227 (269)
T PF06800_consen 162 VSGWSAFLPQAIGMLIGAFIFNLFS-KKPFFE-------------KKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTL 227 (269)
T ss_pred CChhHhHHHHHHHHHHHHHHHhhcc-cccccc-------------cchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhH
Confidence 6799999999999999999999987 444322 1355689999999999999999999999999998
Q ss_pred hhhhhHHHHHHHHhhhhhccCCCcchhHHHHHHHH
Q 015514 354 VQALPLVSTFWGILLFGEYRKSSRRTYILLVSMLS 388 (405)
Q Consensus 354 vQa~plVst~WGv~lf~Efr~ss~~t~~LL~~Ml~ 388 (405)
.|...+|||+||+++|||.|+.....+.+++.+++
T Consensus 228 SQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Li 262 (269)
T PF06800_consen 228 SQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILI 262 (269)
T ss_pred HhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHH
Confidence 89999999999999999998776666777665554
No 4
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.82 E-value=3.4e-20 Score=177.49 Aligned_cols=265 Identities=18% Similarity=0.244 Sum_probs=195.7
Q ss_pred HHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHHHHHH
Q 015514 10 AIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMA 89 (405)
Q Consensus 10 AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~~Ama 89 (405)
.+.+++++++||||++...|... +..+++.. +-+++.++..++.+++- . |. . +++..+.++++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~-~~~~g~l~~~~~~~~~~----~--~~------~--~~~~~~~~g~l 64 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL-GTTFGALILSIAIAIFV----L--PE------F--WALSIFLVGLL 64 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH-HHHHHHHHHHHHHHHHh----C--Cc------c--cccHHHHHHHH
Confidence 47899999999999999999877 45466664 67778888777777631 1 11 1 44678899999
Q ss_pred hhHHHhhhHHHHHHHHHHhccceeeeecceeEEEEcceeeecc--cCCC-CceeeecchhHHHHHHHHHhhhhhccchhc
Q 015514 90 GGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFL--DDKI-NKAEILFPGIACFLVAVGLGSAVHSSNAAD 166 (405)
Q Consensus 90 GGvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~NYfl--d~~~-n~a~iLF~GV~cflvAi~l~a~ah~sna~d 166 (405)
+|+.+++||++...|+...|+|+|+|+..++..++++...++. +.+. .+..+...|+.+.++.+++-+..+
T Consensus 65 ~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~------ 138 (290)
T TIGR00776 65 SGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK------ 138 (290)
T ss_pred HHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc------
Confidence 9999999999999999999999999999999999898888763 2222 123344566667667666643211
Q ss_pred hHHhhcCCCCCCCCCCCccccCCccCCCCCCCCCCCCCCCCcccccccccchhhHhhhhhcchhcccccccchhhHHHHH
Q 015514 167 NKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFA 246 (405)
Q Consensus 167 ~~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~i~~~A 246 (405)
. + + .+|.+ .++..||+..++++
T Consensus 139 ----~----~-~--------------------~~~~~-----------------------------~~~~~~Gi~~~l~s 160 (290)
T TIGR00776 139 ----D----K-S--------------------AGIKS-----------------------------EFNFKKGILLLLMS 160 (290)
T ss_pred ----c----c-c--------------------ccccc-----------------------------ccchhhHHHHHHHH
Confidence 0 0 0 00000 01346899999999
Q ss_pred HHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhccCCcchhHH
Q 015514 247 GVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWAL 326 (405)
Q Consensus 247 Gv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~d~~gr~~a~ 326 (405)
|+++++..-..+.. +.+|++..|...++.++.+.++|....++ .|. . .+.-...+
T Consensus 161 g~~y~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~-------~-~~~~~~~~ 215 (290)
T TIGR00776 161 TIGYLVYVVVAKAF-------------GVDGLSVLLPQAIGMVIGGIIFNLGHILA----KPL-------K-KYAILLNI 215 (290)
T ss_pred HHHHHHHHHHHHHc-------------CCCcceehhHHHHHHHHHHHHHHHHHhcc----cch-------H-HHHHHHHH
Confidence 99997766554422 14689999999999999999999766211 121 1 11222367
Q ss_pred hhhHHHhchhhhhhhccc-chhhHHhhh-hhhhhHHHHHHHHhhhhhccCCCcchh
Q 015514 327 LAGLLCGFGNGLQFMGGQ-AAGYAAADA-VQALPLVSTFWGILLFGEYRKSSRRTY 380 (405)
Q Consensus 327 LaG~icg~Gn~lqfmggq-aAGyA~s~a-vQa~plVst~WGv~lf~Efr~ss~~t~ 380 (405)
+.|++|++++.+.+++.+ ..|++.++- .|.-|++|++|++++|||-++......
T Consensus 216 ~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~ 271 (290)
T TIGR00776 216 LPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIA 271 (290)
T ss_pred HHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeeh
Confidence 799999999999999998 999999997 899999999999999999887655433
No 5
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=99.26 E-value=1.4e-10 Score=116.43 Aligned_cols=313 Identities=20% Similarity=0.302 Sum_probs=202.1
Q ss_pred chhhHHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHH-HHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhH
Q 015514 6 SKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYT-MTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSV 84 (405)
Q Consensus 6 s~~~AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYs-ig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv 84 (405)
+.-..|++.++.=+|-||.-.=+|-. |+|. -|-+..=.. ++-+++-.+.|+.. .|+|.+=++| .+.+.+
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws-WEs~Wlv~gi~swli~P~~~a~l~------ip~~~~i~~~--~~~~~l 73 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS-WESYWLVQGIFSWLIVPWLWALLA------IPDFFSIYSA--TPASTL 73 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc-CCcc-HHHHHHHHHHHHHHHHHHHHHHHh------CCcHHHHHHh--CChhHH
Confidence 34467888888899999988877753 3355 344433322 23344444444432 5899999999 888899
Q ss_pred HHHHHhhHHHhhhHHHHHHHHHHhccceeeeecceeEEEEcceeeecccCC------CCceeeecchhHHHHHHHHHhhh
Q 015514 85 LFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDK------INKAEILFPGIACFLVAVGLGSA 158 (405)
Q Consensus 85 ~~AmaGGvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~NYfld~~------~n~a~iLF~GV~cflvAi~l~a~ 158 (405)
+..++=|+..-+|++.---++-+.|+|.+..|..|++.++||.+==+.+++ .+.-.++..||+..++.|.+.+.
T Consensus 74 ~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~ 153 (344)
T PF06379_consen 74 FWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGK 153 (344)
T ss_pred HHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999999999984443322 22335788899999999999988
Q ss_pred hhccchhchHHhhcCCCCCCCCCCCccccCCccCCCCCCCCCCCCCCCCcccccccccchhhHhhhhhcchhcccccccc
Q 015514 159 VHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILI 238 (405)
Q Consensus 159 ah~sna~d~~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~ 238 (405)
|-. .|-++.+. +. | +.+-.|
T Consensus 154 AG~-------~Ke~~~~~------------------------~~---------------------~--------efn~~k 173 (344)
T PF06379_consen 154 AGS-------MKEKELGE------------------------EA---------------------K--------EFNFKK 173 (344)
T ss_pred HHH-------hhhhhhcc------------------------ch---------------------h--------hhhhhh
Confidence 762 11110000 00 0 224579
Q ss_pred hhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCcee-eehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhc
Q 015514 239 GLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLI-VYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLN 317 (405)
Q Consensus 239 Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt-~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~ 317 (405)
||+|++++|++=+.|+=..+.+..-.-...+.|++.+- -=-.++.--.|-|+.|++.=.+.+.+ . +.-|.++|++
T Consensus 174 Gl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~---~-k~~s~~~d~~ 249 (344)
T PF06379_consen 174 GLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAK---N-KNWSWKGDYS 249 (344)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhh---c-CCCccccccc
Confidence 99999999987666654443332211122233333321 11133444457777777655444332 1 1234555543
Q ss_pred cC-----CcchhHHhhhHHH-----hchhhhhhhcccchhhHHhhh-hhh-hhHHHHHHHHhhhhhccCCCcchhHHHHH
Q 015514 318 DW-----NGRGWALLAGLLC-----GFGNGLQFMGGQAAGYAAADA-VQA-LPLVSTFWGILLFGEYRKSSRRTYILLVS 385 (405)
Q Consensus 318 d~-----~gr~~a~LaG~ic-----g~Gn~lqfmggqaAGyA~s~a-vQa-~plVst~WGv~lf~Efr~ss~~t~~LL~~ 385 (405)
.. +.-.++.|+|.+| ..|+|=++|+.+ +.+.|.. -++ .-++|.+||+ +.||.|++||||.+.|..
T Consensus 250 ~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~--~~~~sW~i~ma~~vl~snvwGl-~lkEWKg~s~kt~~vl~~ 326 (344)
T PF06379_consen 250 VAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGAS--GPFSSWAIHMALIVLFSNVWGL-ILKEWKGASKKTIRVLVL 326 (344)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cccHHHHHHHHHHHHHHHHHHH-HHHHhccCCcccHHHHHH
Confidence 22 2557888999999 456777777744 4455555 343 3467999996 579999999999776654
Q ss_pred HHHHHHHHHH
Q 015514 386 MLSMFIVAVA 395 (405)
Q Consensus 386 Ml~~Fi~gv~ 395 (405)
=+..-|+++.
T Consensus 327 G~~vlI~s~~ 336 (344)
T PF06379_consen 327 GIAVLILSVV 336 (344)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 6
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.90 E-value=2e-10 Score=111.82 Aligned_cols=276 Identities=20% Similarity=0.293 Sum_probs=187.3
Q ss_pred HHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHHHHHHh
Q 015514 11 IVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAG 90 (405)
Q Consensus 11 I~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~~AmaG 90 (405)
+..-++-++.|||-|-+ +.++|-.|+|--+--++|-+++|++..+..- +.-++.++++++.+
T Consensus 4 ~liaL~P~l~WGsip~v---~~k~GG~p~qQ~lGtT~GALifaiiv~~~~~---------------p~~T~~~~iv~~is 65 (288)
T COG4975 4 LLIALLPALGWGSIPLV---ANKFGGKPYQQTLGTTLGALIFAIIVFLFVS---------------PELTLTIFIVGFIS 65 (288)
T ss_pred HHHHHHHHHHhccccee---eeecCCChhHhhhhccHHHHHHHHHHheeec---------------CccchhhHHHHHHh
Confidence 45567788999998865 4455555888888889999999988877621 12567799999999
Q ss_pred hHHHhhhHHHHHHHHHHhccceeeeecceeEEEEcceeeecccCCCCce---eeecchhHHHHHHHHHhhhhhccchhch
Q 015514 91 GVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKA---EILFPGIACFLVAVGLGSAVHSSNAADN 167 (405)
Q Consensus 91 Gvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~NYfld~~~n~a---~iLF~GV~cflvAi~l~a~ah~sna~d~ 167 (405)
|...++|-+.-==|+.+.|.|.|.|++.+.=+|.++..--|.=..=.++ .+=|..++++++.+.+.+.-. +
T Consensus 66 G~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~-----~- 139 (288)
T COG4975 66 GAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQD-----R- 139 (288)
T ss_pred hhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeec-----c-
Confidence 9999999999999999999999999999999998877665532211111 122233333333333332200 0
Q ss_pred HHhhcCCCCCCCCCCCccccCCccCCCCCCCCCCCCCCCCcccccccccchhhHhhhhhcchhcccccccchhhHHHHHH
Q 015514 168 KAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAG 247 (405)
Q Consensus 168 ~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~i~~~AG 247 (405)
+ +||+|| .++-.||+.+-+++
T Consensus 140 --------~----------------------nk~~~~----------------------------~~n~kkgi~~L~iS- 160 (288)
T COG4975 140 --------N----------------------NKEEEN----------------------------PSNLKKGIVILLIS- 160 (288)
T ss_pred --------c----------------------cccccC----------------------------hHhhhhheeeeeee-
Confidence 0 111111 22345666654433
Q ss_pred HHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhccCCcchhHHh
Q 015514 248 VCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALL 327 (405)
Q Consensus 248 v~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~d~~gr~~a~L 327 (405)
++.|-...... +.+. -...+|.+--|+|-.+++++++..=| ++++.=..|+ -++
T Consensus 161 ---t~GYv~yvvl~-~~f~--------v~g~saiLPqAiGMv~~ali~~~~~~------~~~~~K~t~~--------nii 214 (288)
T COG4975 161 ---TLGYVGYVVLF-QLFD--------VDGLSAILPQAIGMVIGALILGFFKM------EKRFNKYTWL--------NII 214 (288)
T ss_pred ---ccceeeeEeee-cccc--------ccchhhhhHHHHHHHHHHHHHhhccc------ccchHHHHHH--------HHh
Confidence 23333332221 2222 23567888889999999999886544 2322222333 578
Q ss_pred hhHHHhchhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhccCCCcchhHHHHHHHHHHHHHHHHH
Q 015514 328 AGLLCGFGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVL 397 (405)
Q Consensus 328 aG~icg~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Efr~ss~~t~~LL~~Ml~~Fi~gv~ll 397 (405)
-|++|++||-+-|++.|++|-|.|.. .|.--+|||+=||+++||=|....-++...+ .+++++|..++
T Consensus 215 ~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iG--iilivvgai~l 283 (288)
T COG4975 215 PGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIG--IILIVVGAILL 283 (288)
T ss_pred hHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhh--HHHHHHHhhhh
Confidence 99999999999999999999999998 8999999999999999997766555555543 44556665554
No 7
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=98.47 E-value=1.9e-07 Score=90.60 Aligned_cols=130 Identities=20% Similarity=0.275 Sum_probs=102.5
Q ss_pred HHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHHHHHHh
Q 015514 11 IVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAG 90 (405)
Q Consensus 11 I~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~~AmaG 90 (405)
+++|++|.++.||=-.=.|-.+. +- +-.+-|=-++++++.++++.+..+. | +-.-+||+|
T Consensus 2 ~~a~~va~~~fGs~~vPvK~~~~-gD-g~~fQw~~~~~i~~~g~~v~~~~~~-----p-------------~f~p~amlg 61 (254)
T PF07857_consen 2 YIACIVAVLFFGSNFVPVKKFDT-GD-GFFFQWVMCSGIFLVGLVVNLILGF-----P-------------PFYPWAMLG 61 (254)
T ss_pred chhHHHHHHHhcccceeeEeccC-CC-cHHHHHHHHHHHHHHHHHHHHhcCC-----C-------------cceeHHHhh
Confidence 46899999999998877776554 33 5677788899999999999887543 2 234589999
Q ss_pred hHHHhhhHHHHHHHHHHhccceeeeecceeEEEEcceee---ecc-cC-CCCceeeecchhHHHHHHHHHhhhhh
Q 015514 91 GVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFN---YFL-DD-KINKAEILFPGIACFLVAVGLGSAVH 160 (405)
Q Consensus 91 Gvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~N---Yfl-d~-~~n~a~iLF~GV~cflvAi~l~a~ah 160 (405)
|.++..||++..-.+--+||+++..+=.+..++.|=..- .|. ++ ...+|.+=..|++|.++...+=+.+-
T Consensus 62 G~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik 136 (254)
T PF07857_consen 62 GALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIK 136 (254)
T ss_pred hhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeec
Confidence 999999999999999999999999999888888775433 342 22 33466677889999999888777765
No 8
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.74 E-value=0.00015 Score=70.10 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=78.2
Q ss_pred hhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhcc
Q 015514 239 GLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLND 318 (405)
Q Consensus 239 Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~d 318 (405)
|+++++++.+|.|.++....... +|. +.-.. -..++.++...+.-. .+.| + .++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~----------~~~~~-~~~~g~l~~~~~~~~--~~~~-----~------~~~ 55 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGP----------YSQTL-GTTFGALILSIAIAI--FVLP-----E------FWA 55 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCH----------HHHHH-HHHHHHHHHHHHHHH--HhCC-----c------ccc
Confidence 67899999999999999887653 233 11111 133344433333222 1223 1 122
Q ss_pred CCcchhHHhhhHHHhchhhhhhhcccchhhHHhhh-hh-hhhHHHHHHHHhhhhhccCCC
Q 015514 319 WNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADA-VQ-ALPLVSTFWGILLFGEYRKSS 376 (405)
Q Consensus 319 ~~gr~~a~LaG~icg~Gn~lqfmggqaAGyA~s~a-vQ-a~plVst~WGv~lf~Efr~ss 376 (405)
+.--.+++++|++|+.||-++|.+=+..|.|.+.. .| ..++++++|++++|||.++..
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~ 115 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI 115 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH
Confidence 44667799999999999999999999999999987 57 556689999999999987443
No 9
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.66 E-value=0.00027 Score=71.70 Aligned_cols=143 Identities=17% Similarity=0.275 Sum_probs=97.5
Q ss_pred cccchhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhh
Q 015514 235 SILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKA 314 (405)
Q Consensus 235 ~~~~Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~a 314 (405)
+...|++..+++++|.|.||=-+.+.-+=+|++ ||. ++.++ ..++..+.+- ..+.| ++.+
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~--------------~W~-v~gi~-~wl~~~~~~g--~~~~~--~f~~ 63 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKKVKKWSWET--------------MWS-VGGIF-SWLILPWLIA--ALLLP--DFWA 63 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccccCCCchhH--------------HHH-HHHHH-HHHHHHHHHH--HHHhh--hHHH
Confidence 467899999999999999998888854446662 366 44443 3333333222 12333 6777
Q ss_pred hhccCC--cchhHHhhhHHHhchhhhhhhcccchhhHHhhh-hhhhh-HHHHHHHHhhhhhcc---CCCcchhHHHHHHH
Q 015514 315 YLNDWN--GRGWALLAGLLCGFGNGLQFMGGQAAGYAAADA-VQALP-LVSTFWGILLFGEYR---KSSRRTYILLVSML 387 (405)
Q Consensus 315 Y~~d~~--gr~~a~LaG~icg~Gn~lqfmggqaAGyA~s~a-vQa~p-lVst~WGv~lf~Efr---~ss~~t~~LL~~Ml 387 (405)
|++..+ .-.+++++|++|++||-+|+.+=+..|-+.+-. .-|.. ++.|++++++++|+. .++...-.+++ .
T Consensus 64 ~~~~~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~g--v 141 (345)
T PRK13499 64 YYSSFSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLG--V 141 (345)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHH--H
Confidence 777444 888999999999999999999877777776654 34443 468999999999998 66666553333 2
Q ss_pred HHHHHHHHHHHH
Q 015514 388 SMFIVAVAVLMA 399 (405)
Q Consensus 388 ~~Fi~gv~ll~a 399 (405)
+.-++|+++...
T Consensus 142 ~liliGi~l~s~ 153 (345)
T PRK13499 142 LVALIGVAIVGR 153 (345)
T ss_pred HHHHHHHHHHHH
Confidence 333455555444
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.43 E-value=0.0012 Score=62.63 Aligned_cols=259 Identities=15% Similarity=0.165 Sum_probs=143.1
Q ss_pred HHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHHHHHH
Q 015514 10 AIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMA 89 (405)
Q Consensus 10 AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~~Ama 89 (405)
++.+-+.+.+||-.|-...|-..++ ++...||.. .+.+.++..+.+-.. .++.+ +. .++.......+
T Consensus 2 ~~~~~~~aa~~~a~~~~~~k~~~~~----~~~~~~~~~-~~~~~~l~~~~~~~~--~~~~~----~~--~~~~~~~~~~~ 68 (281)
T TIGR03340 2 ALTLVVFSALMHAGWNLMAKSHADK----EPDFLWWAL-LAHSVLLTPYGLWYL--AQVGW----SR--LPATFWLLLAI 68 (281)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCc----hhHHHHHHH-HHHHHHHHHHHHHhc--ccCCC----CC--cchhhHHHHHH
Confidence 5678899999999998888833332 233335544 221112222332111 01111 11 12223445667
Q ss_pred hhHHHhhhHHHHHHHHHHhccceeeeecceeEEEEcceeee-cccCCCCceeeecchhHHHHHHHHHhhhhhccchhchH
Q 015514 90 GGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNY-FLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNK 168 (405)
Q Consensus 90 GGvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~NY-fld~~~n~a~iLF~GV~cflvAi~l~a~ah~sna~d~~ 168 (405)
+|+..-..+.+..+|......+++.|+...- -++-+.+-+ +.++|.++..++ |+++.++.+++-.. .
T Consensus 69 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~-p~~~~l~~~~~~~e~~~~~~~~--g~~~~~~Gv~ll~~-~-------- 136 (281)
T TIGR03340 69 SAVANMVYFLGLAQAYHHADVGLVYPLARSS-PLLVAIWATLTLGETLSPLAWL--GILIITLGLLVLGL-S-------- 136 (281)
T ss_pred HHHHHHHHHHHHHHHHhcCChhhhhhHHhhh-HHHHHHHHHHHHcCCCCHHHHH--HHHHHHHHHHHHhc-c--------
Confidence 7777788899999999999999988775433 223333333 355666555544 77766666654311 0
Q ss_pred HhhcCCCCCCCCCCCccccCCccCCCCCCCCCCCCCCCCcccccccccchhhHhhhhhcchhcccccccchhhHHHHHHH
Q 015514 169 AKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGV 248 (405)
Q Consensus 169 ~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~i~~~AGv 248 (405)
+. . +...+|+...+.+++
T Consensus 137 -~~------~-------------------------------------------------------~~~~~g~~~~l~aal 154 (281)
T TIGR03340 137 -RF------A-------------------------------------------------------QHRRKAYAWALAAAL 154 (281)
T ss_pred -cc------c-------------------------------------------------------ccchhHHHHHHHHHH
Confidence 00 0 011357777888888
Q ss_pred HHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhccCCcchhHHhh
Q 015514 249 CFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLA 328 (405)
Q Consensus 249 ~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~d~~gr~~a~La 328 (405)
|++..+= +.+-.. ++.++ .++..++..+++.+.+..+-.+.+.++ ..+ ... .++..-.+..++
T Consensus 155 ~~a~~~i-~~k~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~--~~~~~~~~~~~~ 217 (281)
T TIGR03340 155 GTAIYSL-SDKAAA-------LGVPA--FYSALGYLGIGFLAMGWPFLLLYLKRH--GRS---MFP--YARQILPSATLG 217 (281)
T ss_pred HHHHhhh-hccccc-------cchhc--ccccHHHHHHHHHHHHHHHHHHHHHHh--ccc---hhh--hHHHHHHHHHHH
Confidence 8877553 222111 11221 133344444554444344333322211 001 000 111112335677
Q ss_pred hHHHhchhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhc
Q 015514 329 GLLCGFGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEY 372 (405)
Q Consensus 329 G~icg~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Ef 372 (405)
++..+++..+.+.+-+..|.+.+-. .+--|++++++|++++||=
T Consensus 218 ~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~ 262 (281)
T TIGR03340 218 GLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNER 262 (281)
T ss_pred HHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCC
Confidence 8888889999999888888766555 6888999999999999994
No 11
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.14 E-value=0.012 Score=54.03 Aligned_cols=237 Identities=15% Similarity=0.101 Sum_probs=136.9
Q ss_pred ChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHHHHHHhhHHHhhhHHHHH
Q 015514 23 TWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQ 102 (405)
Q Consensus 23 SWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~~AmaGGvv~nlgNl~lq 102 (405)
+|.......+..-...+..++=+.++.++...+.-.. .+.+ +.......|++.+.+.+++.-
T Consensus 4 ~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~------------~~~~------~~~~~~~~~~~~~~l~~~~~~ 65 (260)
T TIGR00950 4 TGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR------------PPLK------RLLRLLLLGALQIGVFYVLYF 65 (260)
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc------------cCHh------HHHHHHHHHHHHHHHHHHHHH
Confidence 4555554455544545556677777766655443221 1111 234567788888899999999
Q ss_pred HHHHHhccceeeeecceeEEEEcceeeecccCCCCceeeecchhHHHHHHHHHhhhhhccchhchHHhhcCCCCCCCCCC
Q 015514 103 YAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGT 182 (405)
Q Consensus 103 ~a~a~aGlSVa~pi~~slavViGt~~NYfld~~~n~a~iLF~GV~cflvAi~l~a~ah~sna~d~~~Kl~~~~~~~~~~~ 182 (405)
+|....+.+.+-++...--+..-..-.-++.+|.++..+ .|+.+.++.+++-. +. + +
T Consensus 66 ~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~--~gi~i~~~Gv~li~--~~--------------~-~---- 122 (260)
T TIGR00950 66 VAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVL--LAAVLGLAGAVLLL--SD--------------G-N---- 122 (260)
T ss_pred HHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHH--HHHHHHHHhHHhhc--cC--------------C-c----
Confidence 999998888775554322222222223346677755444 36666666665531 20 0 0
Q ss_pred CccccCCccCCCCCCCCCCCCCCCCcccccccccchhhHhhhhhcchhcccccccchhhHHHHHHHHHhhhhhhHHhhcc
Q 015514 183 RATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATN 262 (405)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~i~~~AGv~~s~Fsp~~n~A~n 262 (405)
.+...+|..+++.+.++++...........
T Consensus 123 --------------------------------------------------~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~ 152 (260)
T TIGR00950 123 --------------------------------------------------LSINPAGLLLGLGSGISFALGTVLYKRLVK 152 (260)
T ss_pred --------------------------------------------------ccccHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 012358999999999999999988777652
Q ss_pred ccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhccCCcchhHHhhhHHH-hchhhhhhh
Q 015514 263 DQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLC-GFGNGLQFM 341 (405)
Q Consensus 263 dq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~d~~gr~~a~LaG~ic-g~Gn~lqfm 341 (405)
+ -+ ++..+ +++ ..+.++..+.-.. .....+ ++ .. ++....+-+.-|+++ +++..+.+.
T Consensus 153 ~-~~-----~~~~~-~~~-~~~~~~~~~l~~~---~~~~~~----~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (260)
T TIGR00950 153 K-EG-----PELLQ-FTG-WVLLLGALLLLPF---AWFLGP----NP-QA-----LSLQWGALLYLGLIGTALAYFLWNK 211 (260)
T ss_pred c-CC-----chHHH-HHH-HHHHHHHHHHHHH---HHhcCC----CC-Cc-----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 11122 222 1122332222111 111221 11 11 222222234455555 578888888
Q ss_pred cccchhhHHhhh-hhhhhHHHHHHHHhhhhh
Q 015514 342 GGQAAGYAAADA-VQALPLVSTFWGILLFGE 371 (405)
Q Consensus 342 ggqaAGyA~s~a-vQa~plVst~WGv~lf~E 371 (405)
+-+..+.+.+-. ...-|+++++++++++||
T Consensus 212 a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E 242 (260)
T TIGR00950 212 GLTLVDPSAASILALAEPLVALLLGLLILGE 242 (260)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888888887776 678899999999999999
No 12
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.50 E-value=0.1 Score=50.33 Aligned_cols=138 Identities=10% Similarity=0.047 Sum_probs=82.0
Q ss_pred cchhhHHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhH
Q 015514 5 ESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSV 84 (405)
Q Consensus 5 es~~~AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv 84 (405)
+++.-++.+++++.++||+-+...|++++ -...|...+-+.++.++...+.... ++ .+.+.++ + .++...
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~~~-~~~~~~~~~R~~~a~~~l~~~~~~~-~~----~~~~~~~--~--~~~~~~ 73 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLIYY-VPADEILTHRVIWSFFFMVVLMSIC-RQ----WSYLKTL--I--QTPQKI 73 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHH-cc----HHHHHHH--H--cCHHHH
Confidence 35566789999999999999999998764 3335777777777655443332222 21 1111111 1 355666
Q ss_pred HHHHHhhHHHhhhHHHHHHHHHHhccceeeeecceeEEEEcceeeecccCCCCceeeecchhHHHHHHHH
Q 015514 85 LFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVG 154 (405)
Q Consensus 85 ~~AmaGGvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~NYfld~~~n~a~iLF~GV~cflvAi~ 154 (405)
....+|+....+.+.+.-+|+.....+.+-.+...--+..-..---|+..|.++..++ |+++-++.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~--g~~l~~~Gv~ 141 (296)
T PRK15430 74 FMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWL--AVILAICGVL 141 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHH
Confidence 6667888888899999999998887777654432221111111112235566665554 4444444433
No 13
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.04 E-value=0.01 Score=58.70 Aligned_cols=75 Identities=24% Similarity=0.376 Sum_probs=53.9
Q ss_pred cchhHHhhhHHHhchhhhhhhcccchhhHHhhh-hhhhhHH-HHHHHHhhhhhccCCCcchhHHHHHHHHHHHHHHHHH
Q 015514 321 GRGWALLAGLLCGFGNGLQFMGGQAAGYAAADA-VQALPLV-STFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVL 397 (405)
Q Consensus 321 gr~~a~LaG~icg~Gn~lqfmggqaAGyA~s~a-vQa~plV-st~WGv~lf~Efr~ss~~t~~LL~~Ml~~Fi~gv~ll 397 (405)
.-.+++++|+.|.+|+.+||.+=+..|-.-+-= .=|..|| .++||+++|+|.++...+. +...-+++=++|+.+-
T Consensus 44 ~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~--~G~~Al~liiiGv~lt 120 (269)
T PF06800_consen 44 SFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKI--IGFLALVLIIIGVILT 120 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHH--HHHHHHHHHHHHHHHh
Confidence 345799999999999999999988888766553 3444555 7889999999999765543 3333344555555543
No 14
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.03 E-value=0.021 Score=55.97 Aligned_cols=82 Identities=21% Similarity=0.207 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhccCCcchhHHhhhHHHhchhhhhhhcccchhhHHhhhhhh--hh
Q 015514 281 FFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQA--LP 358 (405)
Q Consensus 281 ~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~d~~gr~~a~LaG~icg~Gn~lqfmggqaAGyA~s~avQa--~p 358 (405)
-++.+.++|+.+++.|.+. +.|+ =+.||+|||++|+.||.+..-.=+-+|-|.+...-+ --
T Consensus 31 Qw~~~~~i~~~g~~v~~~~------~~p~-----------f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~ 93 (254)
T PF07857_consen 31 QWVMCSGIFLVGLVVNLIL------GFPP-----------FYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNC 93 (254)
T ss_pred HHHHHHHHHHHHHHHHHhc------CCCc-----------ceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHH
Confidence 3578999999999999874 2232 478999999999999999999989999999998443 44
Q ss_pred HHHHHHHHh-hhhhccCCCcch
Q 015514 359 LVSTFWGIL-LFGEYRKSSRRT 379 (405)
Q Consensus 359 lVst~WGv~-lf~Efr~ss~~t 379 (405)
++.=.||-| +|++-++.+++.
T Consensus 94 l~Gw~~grfGlFg~~~~~~~~~ 115 (254)
T PF07857_consen 94 LTGWASGRFGLFGLDPQVPSSP 115 (254)
T ss_pred HHHHHHhhceeccccccccchh
Confidence 566667767 677767766554
No 15
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=95.57 E-value=0.46 Score=45.74 Aligned_cols=93 Identities=17% Similarity=0.086 Sum_probs=57.4
Q ss_pred chhhHHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHH
Q 015514 6 SKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVL 85 (405)
Q Consensus 6 s~~~AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~ 85 (405)
|+..++.+|+++++||++=....|.+-..-..++...+-|.++.++..++. . ...+. ++. .+| .
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~----~---~~~~~----~~~--~~~---~ 72 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIF----K---PWRLR----FAK--EQR---L 72 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH----h---HHhcc----CCH--HHH---H
Confidence 667899999999999998888888876665557777777777765543321 1 00111 111 222 2
Q ss_pred HHHHhhHHHhhhHHHHHHHHHHhccceee
Q 015514 86 FAMAGGVVLSIGNLATQYAWAFVGLSVTE 114 (405)
Q Consensus 86 ~AmaGGvv~nlgNl~lq~a~a~aGlSVa~ 114 (405)
..+..|+...+.|.+..++....+.+++-
T Consensus 73 ~~~~~g~~~~~~~~~~~~al~~~~~~~a~ 101 (293)
T PRK10532 73 PLLFYGVSLGGMNYLFYLSIQTVPLGIAV 101 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 23334445566677777777766665543
No 16
>PRK11689 aromatic amino acid exporter; Provisional
Probab=95.50 E-value=0.33 Score=46.79 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=36.2
Q ss_pred hhhHHHhchhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhc
Q 015514 327 LAGLLCGFGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEY 372 (405)
Q Consensus 327 LaG~icg~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Ef 372 (405)
+.|+.-+++..+++.+=+..|...+-. .---|++++++|+++++|-
T Consensus 220 ~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~ 266 (295)
T PRK11689 220 LAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTP 266 (295)
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCC
Confidence 445555667778888888888776555 6778999999999999994
No 17
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=93.85 E-value=2.7 Score=38.28 Aligned_cols=257 Identities=18% Similarity=0.174 Sum_probs=134.3
Q ss_pred hHHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHHHHH
Q 015514 9 GAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAM 88 (405)
Q Consensus 9 ~AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~~Am 88 (405)
....++++.-+.||.+....|..... +....=.....++.+.++.+....... .+..+ ...+.....+
T Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~ 74 (292)
T COG0697 7 LGLLALLLWGLLWGLSFIALKLAVES----LDPFLFAAALRFLIAALLLLPLLLLEP------RGLRP--ALRPWLLLLL 74 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc----cCChHHHHHHHHHHHHHHHHHHHHhhc------ccccc--cccchHHHHH
Confidence 44566667778999988888876554 111111222122222222222222211 00111 2223556777
Q ss_pred HhhHHHhhhHHHHHHHHHHhccceeeeecceeEEEEcceeeecc-cCCCCceeeecchhHHHHHHHHHhhhhhccchhch
Q 015514 89 AGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFL-DDKINKAEILFPGIACFLVAVGLGSAVHSSNAADN 167 (405)
Q Consensus 89 aGGvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~NYfl-d~~~n~a~iLF~GV~cflvAi~l~a~ah~sna~d~ 167 (405)
.+++.+.+++.+.-+++...+.+.+.++....-+..-..-.++. .+|.++.+++- +.+..+.+++-....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~--~~~~~~Gv~lv~~~~------- 145 (292)
T COG0697 75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILG--ILLALAGVLLILLGG------- 145 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHH--HHHHHHhHHheecCC-------
Confidence 88888888888888888888888887666433322222111343 56665544432 444444444432211
Q ss_pred HHhhcCCCCCCCCCCCccccCCccCCCCCCCCCCCCCCCCcccccccccchhhHhhhhhcchhccccc-ccchhhHHHHH
Q 015514 168 KAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKS-ILIGLAITFFA 246 (405)
Q Consensus 168 ~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gta~~l~~le~~rsikv~~~~-~~~Gl~i~~~A 246 (405)
+ . +.. ...|....+.+
T Consensus 146 --------~-~------------------------------------------------------~~~~~~~g~~~~l~a 162 (292)
T COG0697 146 --------G-G------------------------------------------------------GGILSLLGLLLALAA 162 (292)
T ss_pred --------C-c------------------------------------------------------chhHHHHHHHHHHHH
Confidence 0 0 000 36899999999
Q ss_pred HHHHhhhhhhHHhhccccccccCCCCCceeeehhhhH-HHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhccCCcchhH
Q 015514 247 GVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFY-FSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWA 325 (405)
Q Consensus 247 Gv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~-Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~d~~gr~~a 325 (405)
+++.++.+-....-. +..+.+..++ ... ..........+.++- .| .+.+++. .-
T Consensus 163 ~~~~a~~~~~~~~~~------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~-~~~~~~~-------~~ 217 (292)
T COG0697 163 ALLWALYTALVKRLS------------RLGPVTLALLLQLL---LALLLLLLFFLSGFG--AP-ILSRAWL-------LL 217 (292)
T ss_pred HHHHHHHHHHHHHhc------------CCChHHHHHHHHHH---HHHHHHHHHHhcccc--cc-CCHHHHH-------HH
Confidence 999984443332221 1112222221 111 222233333333221 12 3333333 23
Q ss_pred HhhhHHHh-chhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhccC
Q 015514 326 LLAGLLCG-FGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEYRK 374 (405)
Q Consensus 326 ~LaG~icg-~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Efr~ 374 (405)
.+.|++.. +|..+.+.+-+..+....-. ...-|+.+.+|++++++|--+
T Consensus 218 ~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~ 268 (292)
T COG0697 218 LYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLS 268 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 45555555 57777777777666666554 467899999999999999543
No 18
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=92.58 E-value=3.6 Score=39.60 Aligned_cols=115 Identities=13% Similarity=-0.004 Sum_probs=63.0
Q ss_pred cchhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhh
Q 015514 237 LIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYL 316 (405)
Q Consensus 237 ~~Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~ 316 (405)
..|...++.+++|+++.+-...+.. ++. + . -...+.+.++..+..+.. .....|..- . .+.++
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~-------~~~-~-~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~-~~~~~-- 211 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLP-------LPV-G-M--MAGAAEMLAAGVVLLIAS--LLSGERLTA-L-PTLSG-- 211 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC-------CCc-c-h--HHHHHHHHHHHHHHHHHH--HHcCCcccc-c-CCHHH--
Confidence 4799999999999999887644432 111 1 1 111223333333322221 111111000 0 01111
Q ss_pred ccCCcchhHHhhhHHHhchhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhc
Q 015514 317 NDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEY 372 (405)
Q Consensus 317 ~d~~gr~~a~LaG~icg~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Ef 372 (405)
...+..++.+--.++..+.+.+-+..+...+-. .---|+++++|+++++||=
T Consensus 212 ----~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~ 264 (292)
T PRK11272 212 ----FLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGET 264 (292)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 112233333333477778888878888776665 5677999999999999984
No 19
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=92.38 E-value=5.5 Score=38.45 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHH
Q 015514 11 IVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMT 48 (405)
Q Consensus 11 I~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig 48 (405)
..+.+++.++||+.....|++-..--..+..-+-+.++
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a 43 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLV 43 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 35678899999999999998665544456666666654
No 20
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=90.14 E-value=7.6 Score=36.30 Aligned_cols=115 Identities=19% Similarity=0.154 Sum_probs=71.7
Q ss_pred chhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhc
Q 015514 238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLN 317 (405)
Q Consensus 238 ~Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~ 317 (405)
||+...++|.+++|.-.++.-.. . + +.|++..|+=.+-..+.=.++... ++. . ...+..++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~-~----------~~~~~i~~~R~~~a~~~l~~~~~~--~~~----~-~~~~~~~~ 62 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-K-P----------LPATDILGHRMIWSFPFMLLSVTL--FRQ----W-AALIERLK 62 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-c-c----------CCHHHHHHHHHHHHHHHHHHHHHH--Hcc----h-HHHHHHHh
Confidence 68999999999999988887653 1 2 337777777665433222222211 211 1 11122222
Q ss_pred cCC-c--chhHHhhhHHHhchhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhh
Q 015514 318 DWN-G--RGWALLAGLLCGFGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGE 371 (405)
Q Consensus 318 d~~-g--r~~a~LaG~icg~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~E 371 (405)
.++ . +..-.+.|+.-++.+.+.+.+=|....+.|-. .+..|+..++.+.+++||
T Consensus 63 ~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~E 120 (256)
T TIGR00688 63 RIQKRPLILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKE 120 (256)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 221 2 22345677776777777777767665565555 789999999999999987
No 21
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=88.75 E-value=0.14 Score=40.88 Aligned_cols=122 Identities=15% Similarity=0.257 Sum_probs=77.0
Q ss_pred HhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHHHHHHhhHHHhhhH
Q 015514 19 FFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGN 98 (405)
Q Consensus 19 lclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~~AmaGGvv~nlgN 98 (405)
+|||+.....|..-|+...++.+.+-+.++.. .. ++..-.++.. ..+.+. . ........|++...+++
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~------~~~~~~--~--~~~~~~~~~~~~~~~~~ 68 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LL-ILLLILGRKP------FKNLSP--R--QWLWLLFLGLLGTALAY 68 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HH-HHHHhhcccc------ccCCCh--h--hhhhhhHhhccceehHH
Confidence 58999999999888877777888888888765 22 2333333222 111111 2 22334555666678999
Q ss_pred HHHHHHHHHhccceeeeecceeEEEEcceeeecccC-CCCceeeecchhHHHHHHHHH
Q 015514 99 LATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDD-KINKAEILFPGIACFLVAVGL 155 (405)
Q Consensus 99 l~lq~a~a~aGlSVa~pi~~slavViGt~~NYfld~-~~n~a~iLF~GV~cflvAi~l 155 (405)
++..++....+.+.+-++.. +..++...+-++.-+ +.+. .-..|+.+.++++++
T Consensus 69 ~~~~~a~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~~~~--~~~~g~~l~~~g~~l 123 (126)
T PF00892_consen 69 LLYFYALKYISASIVSILQY-LSPVFAAILGWLFLGERPSW--RQIIGIILIIIGVVL 123 (126)
T ss_pred HHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHH
Confidence 99999999999988887765 445556666655433 3322 335566666666654
No 22
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=88.46 E-value=4.4 Score=39.18 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=72.4
Q ss_pred cccchhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHH-HHHHHHHHHHHHhcCCCCCCCccchh
Q 015514 235 SILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVS-GFVIALILNIRFLFSPILDTHRSSFK 313 (405)
Q Consensus 235 ~~~~Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg-~f~~~~i~N~~~m~~P~~g~p~ss~~ 313 (405)
++.||++..+.+.+++|.-+++.-. . ++ .| |....++=.+. ..+...+ ...+++ .+ ..+
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~-~-~~-------~~---~~~~~~~R~~~a~~~l~~~---~~~~~~---~~--~~~ 64 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKL-I-YY-------VP---ADEILTHRVIWSFFFMVVL---MSICRQ---WS--YLK 64 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-h-cC-------CC---HHHHHHHHHHHHHHHHHHH---HHHHcc---HH--HHH
Confidence 4579999999999999998887743 3 22 12 33333332222 2212111 122222 11 122
Q ss_pred hhhccCCcchhHHhhhHHHhchhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhh
Q 015514 314 AYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGE 371 (405)
Q Consensus 314 aY~~d~~gr~~a~LaG~icg~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~E 371 (405)
.-.+++....+.+++++.-++.+.+.|.+=+....+.+-. ....|+..++.+.+++||
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E 123 (296)
T PRK15430 65 TLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGE 123 (296)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2223333333445677777778888888888888887776 678999999999999998
No 23
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=88.35 E-value=1.4 Score=35.21 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=39.6
Q ss_pred HHhhhHH-HhchhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhcc
Q 015514 325 ALLAGLL-CGFGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEYR 373 (405)
Q Consensus 325 a~LaG~i-cg~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Efr 373 (405)
-+.-|++ .++++.+.+.+=+..+.+.+.. .+-.|+++.+++++++||--
T Consensus 56 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~ 106 (126)
T PF00892_consen 56 LLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERP 106 (126)
T ss_pred hhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3344445 5888889999988888888887 68889999999999998854
No 24
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=87.14 E-value=12 Score=35.11 Aligned_cols=131 Identities=12% Similarity=0.126 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHHHHHH
Q 015514 10 AIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMA 89 (405)
Q Consensus 10 AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~~Ama 89 (405)
++.+++++.+|||+-+-..|.++. -...|...+-+.++-++.-++..+ .++ .+...+.+++. ...+-......
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~~~~-~~~~~i~~~R~~~a~~~l~~~~~~-~~~----~~~~~~~~~~~-~~~~~~~~~~~ 75 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKLLKP-LPATDILGHRMIWSFPFMLLSVTL-FRQ----WAALIERLKRI-QKRPLILSLLL 75 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHH-Hcc----hHHHHHHHhCc-ccchHHHHHHH
Confidence 578999999999999999998643 444567777777665443222222 232 11112222210 11122444566
Q ss_pred hhHHHhhhHHHHHHHHHHhccceeeeecceeEEEEcceeee-cccCCCCceeeecchhHH
Q 015514 90 GGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNY-FLDDKINKAEILFPGIAC 148 (405)
Q Consensus 90 GGvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~NY-fld~~~n~a~iLF~GV~c 148 (405)
.|+...+.+.+.-+|......+.+..+... +=+.-+.+.+ ++..|.++-.++-..++.
T Consensus 76 ~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~-~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~ 134 (256)
T TIGR00688 76 CGLLIGFNWWLFIWAVNNGSSLEVSLGYLI-NPLVMVALGRVFLKERISRFQFIAVIIAT 134 (256)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 677777888888888877666655544221 1111222222 345677776655444443
No 25
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=85.02 E-value=3.8 Score=34.23 Aligned_cols=62 Identities=29% Similarity=0.290 Sum_probs=45.7
Q ss_pred hhhhccCCcchhHHhhhHHHh-chhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhccCCCcc
Q 015514 313 KAYLNDWNGRGWALLAGLLCG-FGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEYRKSSRR 378 (405)
Q Consensus 313 ~aY~~d~~gr~~a~LaG~icg-~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Efr~ss~~ 378 (405)
...+++ +...|.++.|+++. .++.+.+.+-+-++ +.... .+-.|++.++=+.+++|| +-|+|
T Consensus 26 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~e--r~~~~ 89 (113)
T PF13536_consen 26 FRALRR-KPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKE--RLSPR 89 (113)
T ss_pred HHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcC--CCCHH
Confidence 334443 34557788899987 88888888877776 55555 788999999999999998 44444
No 26
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=80.96 E-value=13 Score=35.69 Aligned_cols=39 Identities=21% Similarity=0.142 Sum_probs=29.9
Q ss_pred chhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhc
Q 015514 334 FGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEY 372 (405)
Q Consensus 334 ~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Ef 372 (405)
+.|.++|.+=+..|+..+-. ...-|+++++.|+++++|-
T Consensus 233 ~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~ 272 (302)
T TIGR00817 233 FYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTK 272 (302)
T ss_pred HHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCC
Confidence 34556667767777766554 7888999999999999993
No 27
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=73.05 E-value=50 Score=33.74 Aligned_cols=131 Identities=11% Similarity=0.090 Sum_probs=71.9
Q ss_pred cchhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhh
Q 015514 237 LIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYL 316 (405)
Q Consensus 237 ~~Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~ 316 (405)
..|..+.+.|.+|.++.+=...+.+ . ..|....+|+.. ..++..... ++-.+ +.+ .+..++.
T Consensus 188 ~lG~~l~l~aa~~wa~~~il~~~~~-~-------~~~~~~~~t~~~-~~~~~~~~~-~~~l~-~~~-------~~~~~~~ 249 (358)
T PLN00411 188 LIGGALLTIQGIFVSVSFILQAHIM-S-------EYPAAFTVSFLY-TVCVSIVTS-MIGLV-VEK-------NNPSVWI 249 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-H-------HcCcHhHHHHHH-HHHHHHHHH-HHHHH-Hcc-------CCcccce
Confidence 5699999999999986654433332 1 112222333221 111111111 11111 111 1223344
Q ss_pred ccCCcchhHHh-hhHHHhchhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhccCCCcchhHHHHHHHHH
Q 015514 317 NDWNGRGWALL-AGLLCGFGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEYRKSSRRTYILLVSMLSM 389 (405)
Q Consensus 317 ~d~~gr~~a~L-aG~icg~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Efr~ss~~t~~LL~~Ml~~ 389 (405)
.+++.+.+.++ .|+..+++-.+++.+=+..|+..+-. .---|+++++-|+++++| +-..+.++++.+++
T Consensus 250 ~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE----~lt~~~~iG~~LIl 320 (358)
T PLN00411 250 IHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLND----SLYLGCLIGGILIT 320 (358)
T ss_pred eccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCC----CCcHHHHHHHHHHH
Confidence 44454455543 33345556666777888888887765 678899999999999999 34445555554443
No 28
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=65.54 E-value=24 Score=35.81 Aligned_cols=73 Identities=27% Similarity=0.363 Sum_probs=53.7
Q ss_pred hHHHHHHhhHHHhhhHHHHHHHHHHhccceeeeec---ceeEEEEcceeeecccCCCCceeeec--chhHHHHHHHHHhh
Q 015514 83 SVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS---SSITVVIGSTFNYFLDDKINKAEILF--PGIACFLVAVGLGS 157 (405)
Q Consensus 83 sv~~AmaGGvv~nlgNl~lq~a~a~aGlSVa~pi~---~slavViGt~~NYfld~~~n~a~iLF--~GV~cflvAi~l~a 157 (405)
+...-+.-|+.+.+||+..-+|-+.+|++.+|-++ +-++-+-|. ||+..|-.|-|+.+ .|+.|++++.++-+
T Consensus 208 ~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGI---l~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 208 YTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGI---LFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred HHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceE---EEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 56667788999999999999999999999999765 334433343 45555544668766 57778888777655
Q ss_pred h
Q 015514 158 A 158 (405)
Q Consensus 158 ~ 158 (405)
.
T Consensus 285 ~ 285 (288)
T COG4975 285 I 285 (288)
T ss_pred e
Confidence 4
No 29
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=63.69 E-value=73 Score=30.46 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=39.4
Q ss_pred hhHHhhhHHHhchhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhc
Q 015514 323 GWALLAGLLCGFGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEY 372 (405)
Q Consensus 323 ~~a~LaG~icg~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Ef 372 (405)
.+.+++|+....+..+.+.+-+.+..+.+.. .+..|+.+++++.+++||-
T Consensus 64 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~ 114 (281)
T TIGR03340 64 LLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGET 114 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCC
Confidence 3456677777778888888877777777665 5777999999999999984
No 30
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=62.09 E-value=84 Score=28.63 Aligned_cols=117 Identities=21% Similarity=0.160 Sum_probs=63.2
Q ss_pred ccchhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhh
Q 015514 236 ILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAY 315 (405)
Q Consensus 236 ~~~Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY 315 (405)
..++....++++++.+.-.+.......++ . .+....++. .+. ..++-....+++....+
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~------- 63 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESL-D---------PFLFAAALR---FLI-AALLLLPLLLLEPRGLR------- 63 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-C---------ChHHHHHHH---HHH-HHHHHHHHHHhhccccc-------
Confidence 45677788888888888888887776431 1 122222211 111 11111112222211111
Q ss_pred hccCCcchhHHhhhHHHhchhhhhhhc-ccchhhHHhhh-hhhhhHHHHHHHH-hhhhhccC
Q 015514 316 LNDWNGRGWALLAGLLCGFGNGLQFMG-GQAAGYAAADA-VQALPLVSTFWGI-LLFGEYRK 374 (405)
Q Consensus 316 ~~d~~gr~~a~LaG~icg~Gn~lqfmg-gqaAGyA~s~a-vQa~plVst~WGv-~lf~Efr~ 374 (405)
+....|.+.+++|.++.....+.+.. -+.-+.+.+.. ....|+..++++. +++||--+
T Consensus 64 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~ 124 (292)
T COG0697 64 -PALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLS 124 (292)
T ss_pred -ccccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 10012556666666666555444444 45577777776 5788999999996 55577443
No 31
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=60.57 E-value=30 Score=36.02 Aligned_cols=147 Identities=16% Similarity=0.283 Sum_probs=79.9
Q ss_pred ccccchhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchh
Q 015514 234 KSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFK 313 (405)
Q Consensus 234 ~~~~~Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~ 313 (405)
++.+.|+++-.++|+|-+.||=-+++--+=.||+ -...+++-..++...+=.++ -.| ++.
T Consensus 3 ~~ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs------------~Wlv~gi~swli~P~~~a~l------~ip--~~~ 62 (344)
T PF06379_consen 3 SAIILGIIFHAIGGFASGSFYVPFKKVKGWSWES------------YWLVQGIFSWLIVPWLWALL------AIP--DFF 62 (344)
T ss_pred chHHHHHHHHHHHHHHhhhhccchhhcCCccHHH------------HHHHHHHHHHHHHHHHHHHH------hCC--cHH
Confidence 3568999999999999999998888876667773 11222222222222222222 234 688
Q ss_pred hhhccCC--cchhHHhhhHHHhchhhhhhhc----ccchhhHHhhhhhhh-hHHHHHHHHhhhhhccC--CCcchhHHHH
Q 015514 314 AYLNDWN--GRGWALLAGLLCGFGNGLQFMG----GQAAGYAAADAVQAL-PLVSTFWGILLFGEYRK--SSRRTYILLV 384 (405)
Q Consensus 314 aY~~d~~--gr~~a~LaG~icg~Gn~lqfmg----gqaAGyA~s~avQa~-plVst~WGv~lf~Efr~--ss~~t~~LL~ 384 (405)
+|++... .-.+..+-|++||+|.-.-=++ |-+-|++|+- |+ ..+.|+=--++-++|.. +++.....|.
T Consensus 63 ~i~~~~~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~l---Gl~~~~GTlippi~~g~~~~l~~~~~g~~vL~ 139 (344)
T PF06379_consen 63 SIYSATPASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIAL---GLCAVFGTLIPPIFQGTFDELLATPSGQIVLL 139 (344)
T ss_pred HHHHhCChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHH---HHHHHHhhchHHHHcCcccccccCCCchhhhh
Confidence 8888665 5566689999999994322222 2344444433 22 12233322223344432 1222233333
Q ss_pred HHHHHHHHHHHHHHHhCCCC
Q 015514 385 SMLSMFIVAVAVLMASAGHR 404 (405)
Q Consensus 385 ~Ml~~Fi~gv~ll~as~~~r 404 (405)
..++ =++|+++.-.++..|
T Consensus 140 Gv~v-~LiGIai~g~AG~~K 158 (344)
T PF06379_consen 140 GVAV-CLIGIAICGKAGSMK 158 (344)
T ss_pred HHHH-HHHHHHHHhHHHHhh
Confidence 3333 356777666654433
No 32
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=59.65 E-value=60 Score=30.50 Aligned_cols=99 Identities=23% Similarity=0.442 Sum_probs=56.1
Q ss_pred ccchhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhh
Q 015514 236 ILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAY 315 (405)
Q Consensus 236 ~~~Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY 315 (405)
...-..-++++++.+++=.-+-..|+... || ++..|+++.++=..+-.+.-..+|
T Consensus 78 ~~~~~~a~lv~al~fafS~sfW~~Av~aE------------VY------al~~l~~al~~~l~l~w~~~~~~~------- 132 (178)
T PF11028_consen 78 TIAILGAGLVGALAFAFSDSFWFQAVEAE------------VY------ALSSLFTALLLWLLLKWEREADEP------- 132 (178)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH------------HH------HHHHHHHHHHHHHHHHHhhhcccc-------
Confidence 34445556666666666555556665322 44 455555555543333222111111
Q ss_pred hccCCcchhHHhhhHHHhchhhhhhhcccchhhHHhhhhhhhhHHHHHHHHhhhhhccCCCc
Q 015514 316 LNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGILLFGEYRKSSR 377 (405)
Q Consensus 316 ~~d~~gr~~a~LaG~icg~Gn~lqfmggqaAGyA~s~avQa~plVst~WGv~lf~Efr~ss~ 377 (405)
...-|.+++.++||++.+-..+. .-.+| +..|. +.||++++-+-
T Consensus 133 ----~~~r~l~l~afl~GLs~g~H~~~-----------ll~lP--~~~~~-~~~~~~~~~~~ 176 (178)
T PF11028_consen 133 ----RSDRWLLLIAFLCGLSLGVHLLN-----------LLALP--AIALL-YFFKRYKKITW 176 (178)
T ss_pred ----ccchHHHHHHHHHHHHHHHHHHH-----------HHHHH--HHHHH-HHHHccccCCc
Confidence 36778899999999999887665 33334 44444 55888865443
No 33
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=54.47 E-value=1.6e+02 Score=32.69 Aligned_cols=206 Identities=20% Similarity=0.202 Sum_probs=109.9
Q ss_pred EcceeeecccCCCCceeeecchhHHHHHHHHHhhhhhccchhchHHhhcCCCCCCCCCCCccccCCccCCCCCCCCCCCC
Q 015514 124 IGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPE 203 (405)
Q Consensus 124 iGt~~NYfld~~~n~a~iLF~GV~cflvAi~l~a~ah~sna~d~~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (405)
+|-..++|. |.+++..|..+.+|..+.++-+|+.|.----.-+..
T Consensus 98 ~G~LSDlfG-----Rr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~G------------------------------ 142 (599)
T PF06609_consen 98 VGRLSDLFG-----RRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYG------------------------------ 142 (599)
T ss_pred hHHHHHHhc-----chHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHH------------------------------
Confidence 455555554 779999999999999999999997665321111110
Q ss_pred CCCCcccccccccchhhH-hhhhhcchhcccccccchhhHHHHHHHHHhhhhhhHHhhcc--ccccccCCCCCceeeehh
Q 015514 204 VGNDTVGKLKAGTAGFLV-EIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATN--DQWHALKKGVPHLIVYTA 280 (405)
Q Consensus 204 ~~~~~~~~~~~gta~~l~-~le~~rsikv~~~~~~~Gl~i~~~AGv~~s~Fsp~~n~A~n--dq~~~l~~gvp~Lt~YTA 280 (405)
.-+|..+... -+.|--+ -|.+..|+.+..+.-+.....+|.+....+ .+|+-
T Consensus 143 --------vgaG~~~~~~~~isEl~p----~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw------------- 197 (599)
T PF06609_consen 143 --------VGAGVQELAALAISELVP----NKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRW------------- 197 (599)
T ss_pred --------HhhHHHHHHHHHHHHhcc----cchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcch-------------
Confidence 0011111000 0111111 123345666666666677777888876554 57882
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCC----CCCccchhhhhccCCcchhHHhhhHHHhchhhhhhhcccchhhHH---hhh
Q 015514 281 FFYFSVSGFVIALILNIRFLFSPIL----DTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAA---ADA 353 (405)
Q Consensus 281 ~F~Fsvg~f~~~~i~N~~~m~~P~~----g~p~ss~~aY~~d~~gr~~a~LaG~icg~Gn~lqfmggqaAGyA~---s~a 353 (405)
.||+.......++++= .+.|||-- -.++.+.+++++ -.-++|+++...|.++=.++=+-+|+.- ..+
T Consensus 198 ~~~~~~i~~~i~~vl~-~~fY~PP~~~~~~~~~~s~~~~l~-----~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa 271 (599)
T PF06609_consen 198 IFYIFIIWSGIALVLI-FFFYFPPPRAQLHGRKLSKREQLK-----ELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSA 271 (599)
T ss_pred HHHHHHHHHHHHHHHH-HHHhCCCchhhhccccCcHHHHHH-----HhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCc
Confidence 3344444444444443 34588732 112245556664 2345888888888888777767777652 223
Q ss_pred -hhhhhHHH--HHHHHhhhhhccC---CC-------cchhHHHHHHHHHHHHHHHH
Q 015514 354 -VQALPLVS--TFWGILLFGEYRK---SS-------RRTYILLVSMLSMFIVAVAV 396 (405)
Q Consensus 354 -vQa~plVs--t~WGv~lf~Efr~---ss-------~~t~~LL~~Ml~~Fi~gv~l 396 (405)
+-+ |+|. .+=-+|.+=|.+. .| |+...+-..+++.|+.|...
T Consensus 272 ~VIa-~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~ 326 (599)
T PF06609_consen 272 HVIA-PLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNF 326 (599)
T ss_pred cchh-hHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHH
Confidence 444 4443 1112233335322 22 11233455567777777654
No 34
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=51.44 E-value=2.1e+02 Score=27.24 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhcC
Q 015514 281 FFYFSVSGFVIALILNIRFLFS 302 (405)
Q Consensus 281 ~F~Fsvg~f~~~~i~N~~~m~~ 302 (405)
.|+....+.+...++-.++++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~ 168 (377)
T PRK11102 147 IFWVLALAAILAAALVFFFIPE 168 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc
Confidence 4444444444444433344443
No 35
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=48.15 E-value=2.5e+02 Score=27.24 Aligned_cols=30 Identities=10% Similarity=0.341 Sum_probs=16.5
Q ss_pred eecccCCCCceeeecchhHHHHHHHHHhhhh
Q 015514 129 NYFLDDKINKAEILFPGIACFLVAVGLGSAV 159 (405)
Q Consensus 129 NYfld~~~n~a~iLF~GV~cflvAi~l~a~a 159 (405)
.++.| |.+|-.++..|..+..++.++....
T Consensus 64 G~l~D-r~grr~~~~~~~~~~~~~~~~~~~~ 93 (394)
T PRK11652 64 GPLSD-RVGRRPVILVGMSIFILGTLVALFA 93 (394)
T ss_pred hhHHH-hcCChHHHHHHHHHHHHHHHHHHHH
Confidence 34454 3335455666766666666655443
No 36
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=41.55 E-value=9.3 Score=34.42 Aligned_cols=30 Identities=27% Similarity=0.258 Sum_probs=23.5
Q ss_pred eeeecccCCCCceeeecchhHHHHHHHHHhhhhh
Q 015514 127 TFNYFLDDKINKAEILFPGIACFLVAVGLGSAVH 160 (405)
Q Consensus 127 ~~NYfld~~~n~a~iLF~GV~cflvAi~l~a~ah 160 (405)
+++|+.+++-+ |.||++.+++|.+.|+..-
T Consensus 82 ~~~~L~~~~~~----llP~~~~I~vaglaGsIla 111 (158)
T PF09769_consen 82 TIASLHPPPEE----LLPGLGYIGVAGLAGSILA 111 (158)
T ss_pred HHHhhcCCCcc----cCcceeeeehhhhheeeee
Confidence 45666655542 9999999999999998876
No 37
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=39.55 E-value=65 Score=32.41 Aligned_cols=128 Identities=11% Similarity=0.071 Sum_probs=65.9
Q ss_pred ccchhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCC-ccchhh
Q 015514 236 ILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTH-RSSFKA 314 (405)
Q Consensus 236 ~~~Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p-~ss~~a 314 (405)
+..|.++++++.+++++.+-+..+.+.+ -+. -..++++.+.++|-++-.++..+.+-... .+.+ .....+
T Consensus 192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~lp~~~~~-----e~~~~~~~~~~ 262 (350)
T PTZ00343 192 TWLAFWCAMLSNLGSSLRSIFAKKTMKN-KSE---IGENLTASNIYMLLTLIASLISLPLVLFF-----EGKKWVPVWTN 262 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccc---ccccCCHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHH
Confidence 3679999999999999988888777641 110 00123344444433333333222221111 1100 011112
Q ss_pred hhccCCcc-----hhHHhhhHHHhch-hhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhc
Q 015514 315 YLNDWNGR-----GWALLAGLLCGFG-NGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEY 372 (405)
Q Consensus 315 Y~~d~~gr-----~~a~LaG~icg~G-n~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Ef 372 (405)
|..+...+ ...++...+|.+- |-.+|++=+..++..+-. ...=|+++++-++++|+|=
T Consensus 263 ~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~ 327 (350)
T PTZ00343 263 YTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQ 327 (350)
T ss_pred hhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCC
Confidence 21111111 1122333334333 556666766665555443 5678999999999999863
No 38
>PRK11056 hypothetical protein; Provisional
Probab=37.48 E-value=46 Score=30.10 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=12.8
Q ss_pred ccchhhHHHHHHHHH
Q 015514 236 ILIGLAITFFAGVCF 250 (405)
Q Consensus 236 ~~~Gl~i~~~AGv~~ 250 (405)
.++-|++++++|+|.
T Consensus 8 ek~tLlLaliaGl~~ 22 (120)
T PRK11056 8 EKGTLLLALIAGLSI 22 (120)
T ss_pred chhhHHHHHHHHHhh
Confidence 467799999999986
No 39
>PRK10263 DNA translocase FtsK; Provisional
Probab=33.55 E-value=76 Score=38.49 Aligned_cols=84 Identities=23% Similarity=0.263 Sum_probs=41.7
Q ss_pred ccccCCCCCceeeehhhhHHHHHHHHHHHHHHH--HH-hcCCCCCCCccchhhhhccCCcchhHHhhhHHHhchhhh---
Q 015514 265 WHALKKGVPHLIVYTAFFYFSVSGFVIALILNI--RF-LFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGL--- 338 (405)
Q Consensus 265 ~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~--~~-m~~P~~g~p~ss~~aY~~d~~gr~~a~LaG~icg~Gn~l--- 338 (405)
=|++...+|...-.+.++.|.++.|++-+++-. ++ +++. .+.....|+.- .-|.+|++..++...|...
T Consensus 60 V~Nl~GiVGA~LAD~L~~LFGl~AYLLP~LL~~~a~~l~R~r----~~~~~l~~~~l-~lRliGlLLLLLas~gLaa~~~ 134 (1355)
T PRK10263 60 IHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQ----SSDEYIDYFAV-SLRIIGVLALILTSCGLAAINA 134 (1355)
T ss_pred cccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc----ccchhhhhHHH-HHHHHHHHHHHHHHHHHHHhcc
Confidence 344444456666667778888887766543322 22 2322 11111122210 1345566554433333221
Q ss_pred ----hhhcccchhhHHhhh
Q 015514 339 ----QFMGGQAAGYAAADA 353 (405)
Q Consensus 339 ----qfmggqaAGyA~s~a 353 (405)
.+.+|+..|+.+++.
T Consensus 135 ~d~~~~~gGGIIG~lLs~l 153 (1355)
T PRK10263 135 DDIWYFASGGVIGSLLSTT 153 (1355)
T ss_pred cccccccccchHHHHHHHH
Confidence 235788999888775
No 40
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.03 E-value=38 Score=30.56 Aligned_cols=59 Identities=17% Similarity=0.316 Sum_probs=42.5
Q ss_pred ceeeehhhhHHHHHHHH-HHHHHHHHHhcCCCCCCCccchhhhhccCC-cc------hhHHhhhHHHhchhhhh
Q 015514 274 HLIVYTAFFYFSVSGFV-IALILNIRFLFSPILDTHRSSFKAYLNDWN-GR------GWALLAGLLCGFGNGLQ 339 (405)
Q Consensus 274 ~Lt~YTA~F~Fsvg~f~-~~~i~N~~~m~~P~~g~p~ss~~aY~~d~~-gr------~~a~LaG~icg~Gn~lq 339 (405)
.+-|+|.|+.-|..||. ++.=+-.|+++||..| .|++||. ++ -+-.+..+.+++|-++-
T Consensus 24 PlLPTTPFlLLaa~cFaRsSpRf~~WLl~~~~fg-------~~v~~~~e~~ai~~~aK~~ai~~i~~~~~~s~~ 90 (119)
T COG2832 24 PLLPTTPFLLLAAACFARSSPRFHAWLLRHKYFG-------PYVRDWREGGAIPRKAKIKAILLITLSIGISFY 90 (119)
T ss_pred cccCCcHHHHHHHHHHHcCCcHHHHHHHcCchhh-------HHHHHHHHcCCCChhhHHHHHHHHHHHHHHHhh
Confidence 45599999999999998 7788999999999988 2444443 33 33445666666665543
No 41
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=32.70 E-value=1.8e+02 Score=29.06 Aligned_cols=102 Identities=22% Similarity=0.275 Sum_probs=64.4
Q ss_pred HHHHHHHhcCCCCCCCccchhhhhccCCcchhHHhhhHHHhchhhhhhhcccchhhHHhhh-hhhh------hHHHHH-H
Q 015514 293 LILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADA-VQAL------PLVSTF-W 364 (405)
Q Consensus 293 ~i~N~~~m~~P~~g~p~ss~~aY~~d~~gr~~a~LaG~icg~Gn~lqfmggqaAGyA~s~a-vQa~------plVst~-W 364 (405)
+++.-...|.=++. ..++-|-.++..||.|+.+-++...+++.++-++ +-.|-|++.. ..+. +++..+ +
T Consensus 27 ~~~q~~~~R~~~~T--g~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~-~~~g~a~al~ll~g~~~~~~~~~~~~~~~ 103 (358)
T PF01566_consen 27 YVFQEMAARLGIVT--GKGLAEGIRERFGRGWAWFLWILIFLANIATQAA-EIIGIAIALNLLFGIPLWIWVLLVAVIAI 103 (358)
T ss_pred HHHHHHHHHHhhhc--CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 33333444444332 2466677777779999999988888887776665 5556555542 2232 222222 2
Q ss_pred HHhh--hhhccCCCcchhHHHHHHHHHHHHHHHHH
Q 015514 365 GILL--FGEYRKSSRRTYILLVSMLSMFIVAVAVL 397 (405)
Q Consensus 365 Gv~l--f~Efr~ss~~t~~LL~~Ml~~Fi~gv~ll 397 (405)
.++. .+.||+-.|-...+...|.++|+..+.+.
T Consensus 104 ~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~ 138 (358)
T PF01566_consen 104 LLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIV 138 (358)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333 47888888888888888888888876653
No 42
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=31.61 E-value=38 Score=30.86 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=27.3
Q ss_pred CCCCCceeee-hhhhHHHHHHHHHHHHHHHHHhcCCCC
Q 015514 269 KKGVPHLIVY-TAFFYFSVSGFVIALILNIRFLFSPIL 305 (405)
Q Consensus 269 ~~gvp~Lt~Y-TA~F~Fsvg~f~~~~i~N~~~m~~P~~ 305 (405)
.+|.|++.++ +-+||..+.+.+.-+++|.++ |+|+.
T Consensus 6 ~~~~~~l~~~~~~~~~~~i~Flil~~iL~~~~-~kpi~ 42 (173)
T PRK13460 6 AKGLSLLDVNPGLVVWTLVTFLVVVLVLKKFA-WDVIL 42 (173)
T ss_pred cCCCCccCCcHhHHHHHHHHHHHHHHHHHHHh-HHHHH
Confidence 4678888888 477788888888888888666 67763
No 43
>COG2391 Predicted transporter component [General function prediction only]
Probab=31.61 E-value=80 Score=29.77 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=35.9
Q ss_pred HHhhhHHHhchhhhhhhcccchhhHHhhhhhhhhHHHHHHHHhh
Q 015514 325 ALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGILL 368 (405)
Q Consensus 325 a~LaG~icg~Gn~lqfmggqaAGyA~s~avQa~plVst~WGv~l 368 (405)
-++||++-|+|+.+..--....+|......+..+++++.++...
T Consensus 105 ~iiGg~iFG~G~~LagGC~~g~~~~~~~g~~~~~~~~~~~~~~~ 148 (198)
T COG2391 105 LLIGGLIFGLGTVLAGGCTSGHGVRGGEGGSLRSIVAVLLFMIA 148 (198)
T ss_pred HHHHHHheeeccccCCCCCcHHHHHhcCCCCchHHHHHHHHHHH
Confidence 79999999999999877777778888777666688888877654
No 44
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=31.60 E-value=89 Score=27.83 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=27.3
Q ss_pred hHHHHHHHHhhhhhccC-CCcchhHHHHHHHHHHHHHHH
Q 015514 358 PLVSTFWGILLFGEYRK-SSRRTYILLVSMLSMFIVAVA 395 (405)
Q Consensus 358 plVst~WGv~lf~Efr~-ss~~t~~LL~~Ml~~Fi~gv~ 395 (405)
.+++++..++.|-++.- ...-.++++.+|++..+++++
T Consensus 88 sv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvA 126 (142)
T PF11712_consen 88 SVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVA 126 (142)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 55666666666666555 566778888888888887765
No 45
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=31.41 E-value=1.6e+02 Score=29.40 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=60.1
Q ss_pred ccchhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhh--HHHHHHHHHHHHHHHHHhcCCCCCCCccchh
Q 015514 236 ILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFF--YFSVSGFVIALILNIRFLFSPILDTHRSSFK 313 (405)
Q Consensus 236 ~~~Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F--~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~ 313 (405)
-..|+.+.+..++..+.+.|..-..--+.|. + |..++ -+..+. -+.++.+++.+++=.+.-+-| ..++.-.+
T Consensus 147 ~~i~~~~~l~~~l~l~v~~~~~~~~~~~~~~-~-~~~~~--~~~~~~~~~~~~~~l~~~~~f~~ly~~lP--~~~~~~~~ 220 (303)
T COG1295 147 WTLGTLLPLLFALLLSVVGPIALQALLLRFG-L-PFFDV--LVLILLRLRLLVSLLLLTLGFFLLYRFLP--NVRVLKWR 220 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-c-chhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccccchH
Confidence 4467777888888888888866554333332 1 11111 112222 223333333344433333335 22111222
Q ss_pred hhhccCCcchhHHhhhHHHhch-hhhhhhcccchhhHHhhhhhhhhHHHHHHHHhh
Q 015514 314 AYLNDWNGRGWALLAGLLCGFG-NGLQFMGGQAAGYAAADAVQALPLVSTFWGILL 368 (405)
Q Consensus 314 aY~~d~~gr~~a~LaG~icg~G-n~lqfmggqaAGyA~s~avQa~plVst~WGv~l 368 (405)
+=+ .-++++.+.|=+| .++.+.-...+.|..+|+.=|..++=.+|-.+.
T Consensus 221 ~~~------~Ga~~aai~~~i~~~~f~~Yv~~~~~y~~~YGalgsvi~lmlw~y~~ 270 (303)
T COG1295 221 DVL------PGALLAAILFELGKYLFGYYLSNFANYSSTYGALGSVIILLLWLYIS 270 (303)
T ss_pred Hhh------hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 111 1255666666554 456666677788888887655555555554443
No 46
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=30.81 E-value=5.4e+02 Score=25.51 Aligned_cols=27 Identities=7% Similarity=-0.012 Sum_probs=18.2
Q ss_pred CCCCceeeecchhHHHHHHHHHhhhhh
Q 015514 134 DKINKAEILFPGIACFLVAVGLGSAVH 160 (405)
Q Consensus 134 ~~~n~a~iLF~GV~cflvAi~l~a~ah 160 (405)
||.||-.++..+..++.++.++.+.++
T Consensus 80 Dr~grr~~~~~~~~~~~~~~~~~~~~~ 106 (394)
T PRK10213 80 QATDRRYVVILFAVLLTLSCLLVSFAN 106 (394)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHC
Confidence 566677777777777777666655543
No 47
>PF13347 MFS_2: MFS/sugar transport protein
Probab=30.11 E-value=4.5e+02 Score=26.18 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcC----CCCCCCccchhhhh
Q 015514 241 AITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFS----PILDTHRSSFKAYL 316 (405)
Q Consensus 241 ~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~----P~~g~p~ss~~aY~ 316 (405)
....+++++.+...|.+-.... + + -...-|...++....+++...++-....|. +-..+++.++++.+
T Consensus 147 ~~~~~g~~l~~~~~~~l~~~~g-~------~-~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~ 218 (428)
T PF13347_consen 147 IFSMIGSLLASFLAPILVSWFG-G------G-DTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSL 218 (428)
T ss_pred HHHHHHHHHHHHHhhhhhhhhc-c------C-ccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccch
Confidence 3455666555666655542111 0 0 011357777777777777777777777777 23344566777777
Q ss_pred ccCC-cchhHH--hhhHHHhchhh
Q 015514 317 NDWN-GRGWAL--LAGLLCGFGNG 337 (405)
Q Consensus 317 ~d~~-gr~~a~--LaG~icg~Gn~ 337 (405)
+.-. .|.+-. ++-++..+++.
T Consensus 219 ~~~~~nr~~~~l~~~~~~~~~~~~ 242 (428)
T PF13347_consen 219 RSLFRNRPFRILLLAFFLQWLAFA 242 (428)
T ss_pred hhhcccchHHHHHHHHHHHHhhhh
Confidence 7543 443332 33333334433
No 48
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=30.04 E-value=42 Score=29.89 Aligned_cols=33 Identities=24% Similarity=0.507 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHH
Q 015514 9 GAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYT 46 (405)
Q Consensus 9 ~AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYs 46 (405)
.+++.+++++++-|.| ++++ |||| |+.+|+-+.
T Consensus 57 ~~ll~~~~~v~~gg~~--l~rl--KRGK-P~~yl~r~l 89 (121)
T PF11990_consen 57 GALLGPILGVFVGGKL--LARL--KRGK-PEGYLYRRL 89 (121)
T ss_pred HHHHHHHHHHHHhHHH--HHHH--HcCC-chhHHHHHH
Confidence 4556666666777766 3332 6899 888777763
No 49
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=27.99 E-value=2.4e+02 Score=24.87 Aligned_cols=74 Identities=28% Similarity=0.323 Sum_probs=41.4
Q ss_pred cchhHHhhhHHHhchhhhhhhcc--cchhhHHhhh-hhhhhHHHHHHHHhhhhhccCCCcchhHHHHHHHHHHHHHHHHH
Q 015514 321 GRGWALLAGLLCGFGNGLQFMGG--QAAGYAAADA-VQALPLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVL 397 (405)
Q Consensus 321 gr~~a~LaG~icg~Gn~lqfmgg--qaAGyA~s~a-vQa~plVst~WGv~lf~Efr~ss~~t~~LL~~Ml~~Fi~gv~ll 397 (405)
.+....+|+++.+.| ...|++. +..+..+=-+ .++..+.+..=+...++ |+.++-...++....+++...++++
T Consensus 33 ~~~l~~lGall~~~g-ii~fvA~nW~~i~~~~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~l~ga~iali 109 (145)
T PF09925_consen 33 ARILLYLGALLLGLG-IILFVAANWDDIPRLAKLGLLLALLLLSYVGGFWLWR--RRSPRLAEALLLLGAVLFGALIALI 109 (145)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999 5567665 3333333222 34433333332222223 5555555666666666666666654
No 50
>PRK03633 putative MFS family transporter protein; Provisional
Probab=27.88 E-value=4.6e+02 Score=25.46 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhcccCCCCcchhhhh
Q 015514 49 NLLAAIIIAFTLGEFGDARPNFVYQL 74 (405)
Q Consensus 49 ~lL~All~A~TlGsiG~~~~~Fl~qL 74 (405)
.++...+..+.++.+..--|.+.+|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~lp~~~~~~ 36 (381)
T PRK03633 11 LLCGLLLLTLAIAVLNTLVPLWLAQE 36 (381)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHc
Confidence 33444455666666654445555554
No 51
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=27.33 E-value=2.7e+02 Score=26.79 Aligned_cols=62 Identities=15% Similarity=0.021 Sum_probs=32.5
Q ss_pred HHhhhHHHHHHHHHHhccceeeeecceeEEEEcceeeec-ccCCCCceeeecchhHHHHHHHHHhh
Q 015514 93 VLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYF-LDDKINKAEILFPGIACFLVAVGLGS 157 (405)
Q Consensus 93 v~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~NYf-ld~~~n~a~iLF~GV~cflvAi~l~a 157 (405)
...+.|.+.-+++.-.|-+.+-+. ..+--|.++.+.++ ++++. . ..-..|.+++++++.+..
T Consensus 230 ~~~~~~~~~~~~l~~~sa~t~sv~-~~l~pv~~~~~~~~~lge~l-t-~~~~~G~~lil~Gv~l~~ 292 (302)
T TIGR00817 230 FFHFYQQVAFMLLGRVSPLTHSVG-NCMKRVVVIVVSILFFGTKI-S-PQQVFGTGIAIAGVFLYS 292 (302)
T ss_pred HHHHHHHHHHHHHccCCchHHHHH-hhhhhhheeeeehhhcCCCC-c-hhHHHHHHHHHHHHHHHH
Confidence 455566555556666665555444 22223344444443 44444 2 334557777777776654
No 52
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=26.12 E-value=1.8e+02 Score=31.08 Aligned_cols=62 Identities=29% Similarity=0.553 Sum_probs=37.8
Q ss_pred hhhhhcchh-----------cccccccch-------hhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhH
Q 015514 222 EIENRRSIK-----------VFGKSILIG-------LAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFY 283 (405)
Q Consensus 222 ~le~~rsik-----------v~~~~~~~G-------l~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~ 283 (405)
+.+++|.|| ..|+....| -.++++.|+|.-+ .-+|+ |++--|.-|--.-.-.+||
T Consensus 313 ~~~e~r~ikLGlGDFIFYSvLvGkAa~~~d~~TviAC~vaIL~GL~~TL----~llsv---~~kALPALPisI~~G~iFY 385 (406)
T KOG2736|consen 313 EDNEERGIKLGLGDFIFYSVLVGKAAAYGDLNTVIACFVAILIGLCLTL----LLLSV---FKKALPALPISITFGLIFY 385 (406)
T ss_pred ccccccceeeccCceEEEEeeccchhhcCChHHHHHHHHHHHHHHHHHH----HHHHH---HhhcCcCCchHHHHHHHHH
Confidence 566899999 235544444 3445555665544 33333 2222477777777888999
Q ss_pred HHHHHHH
Q 015514 284 FSVSGFV 290 (405)
Q Consensus 284 Fsvg~f~ 290 (405)
||.-.++
T Consensus 386 F~t~~l~ 392 (406)
T KOG2736|consen 386 FSTRLLV 392 (406)
T ss_pred HHHHHHH
Confidence 9987665
No 53
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=26.11 E-value=4e+02 Score=22.47 Aligned_cols=126 Identities=19% Similarity=0.188 Sum_probs=79.6
Q ss_pred hhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhc-
Q 015514 239 GLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLN- 317 (405)
Q Consensus 239 Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~- 317 (405)
|...++.+-++.++-.-...+.+.+. .+...++.+.+-.+|.+.-.++.-+++=... ..|-.. ....++.+
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~----~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~-e~~~~~---~~~~~~~~~ 72 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKV----SSNSKKLNPLNLLYYNSPISFIILLPLAFLL-EGPQLS---SFFSEIFGE 72 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcc----cccccCCCHHHHHHHHHHHHHHHHHHHHHHH-hhhhhh---hHHHHhhhh
Confidence 56777788888887777777766421 1234677788888888888777766653322 322111 12223332
Q ss_pred ----cCCcchhHHhhhHHHhchhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhc
Q 015514 318 ----DWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEY 372 (405)
Q Consensus 318 ----d~~gr~~a~LaG~icg~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Ef 372 (405)
+.+.-.+-++.|+++.+=|-.+|+-=+..++-.--. ++.=..+..+=|+++|+|-
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~ 132 (153)
T PF03151_consen 73 ELSSDPNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEP 132 (153)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 223445556788988888999998866666554332 4555666777888999964
No 54
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=23.93 E-value=2.1e+02 Score=26.90 Aligned_cols=59 Identities=24% Similarity=0.299 Sum_probs=41.5
Q ss_pred cchhHHhhhHHHhchhhhhhhcccchhhHHhhhhhhhhHHHHHHHHhhhhhccCCCcchhHHH
Q 015514 321 GRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGILLFGEYRKSSRRTYILL 383 (405)
Q Consensus 321 gr~~a~LaG~icg~Gn~lqfmggqaAGyA~s~avQa~plVst~WGv~lf~Efr~ss~~t~~LL 383 (405)
.+..|+.|++..++.-.+=+.+-++==||.+ .+=+-..+|..+-|.|-.+.+++...++
T Consensus 81 ~~~a~lv~al~fafS~sfW~~Av~aEVYal~----~l~~al~~~l~l~w~~~~~~~~~~r~l~ 139 (178)
T PF11028_consen 81 ILGAGLVGALAFAFSDSFWFQAVEAEVYALS----SLFTALLLWLLLKWEREADEPRSDRWLL 139 (178)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhccccccchHHH
Confidence 4566778888888887777877665555554 4445578999999988766565555443
No 55
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=23.88 E-value=5.9e+02 Score=24.65 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=13.7
Q ss_pred eecccCCCCceeeecchhHHHHHHHHHhhh
Q 015514 129 NYFLDDKINKAEILFPGIACFLVAVGLGSA 158 (405)
Q Consensus 129 NYfld~~~n~a~iLF~GV~cflvAi~l~a~ 158 (405)
.++.| |.++-.++..+..+..++.++.+.
T Consensus 71 g~l~d-r~g~r~~~~~~~~~~~~~~~~~~~ 99 (406)
T PRK11551 71 GRLAD-RIGRKRILIVSVALFGLFSLATAQ 99 (406)
T ss_pred HHHHH-HhCCchhHHHHHHHHHHHHHHHHH
Confidence 34443 333445555555555555444433
No 56
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=23.15 E-value=2.7e+02 Score=27.90 Aligned_cols=108 Identities=23% Similarity=0.250 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHH---HHhcCCCCCCCc-cchhhhhccCCcchhHHhhh-HHHhchhhhhhhcccchhhHHhhhhhhhhHH
Q 015514 286 VSGFVIALILNI---RFLFSPILDTHR-SSFKAYLNDWNGRGWALLAG-LLCGFGNGLQFMGGQAAGYAAADAVQALPLV 360 (405)
Q Consensus 286 vg~f~~~~i~N~---~~m~~P~~g~p~-ss~~aY~~d~~gr~~a~LaG-~icg~Gn~lqfmggqaAGyA~s~avQa~plV 360 (405)
+|.++.+..+|. -..+.|-.+.++ ..-+.|++++ -++.| ++.++|+.++|++ -++|-+-.+|-+--+
T Consensus 14 ~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~-----~W~~G~~~~~~g~~~~~~A---l~~ap~slv~Plg~~ 85 (300)
T PF05653_consen 14 VSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRP-----LWWIGLLLMVLGEILNFVA---LGFAPASLVAPLGAL 85 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhH-----HHHHHHHHHhcchHHHHHH---HHhhhHHHHHHHHhh
Confidence 344555555543 222334322222 2345777642 22233 3457888888863 445544457877777
Q ss_pred HHHHHHhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHhCCC
Q 015514 361 STFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGH 403 (405)
Q Consensus 361 st~WGv~lf~Efr~ss~~t~~LL~~Ml~~Fi~gv~ll~as~~~ 403 (405)
+.+|..++=.-+-+-+-+..-.++..++. +|..+++..+.|
T Consensus 86 ~lv~~~~~a~~~l~e~~~~~~~~G~~l~i--~G~~liv~~~~~ 126 (300)
T PF05653_consen 86 SLVFNAVLARFFLGEKLTRRDIVGCALII--LGSVLIVIFAPK 126 (300)
T ss_pred hhhhHHHHhHHHhcccchHhHHhhHHHHH--hhheeeEEeCCC
Confidence 77787777666665555555555554433 355555544444
No 57
>PRK10483 tryptophan permease; Provisional
Probab=20.98 E-value=3.6e+02 Score=28.63 Aligned_cols=88 Identities=20% Similarity=0.294 Sum_probs=55.7
Q ss_pred ccchhhhhccCCcchhHHhhhH-------------HHhchhhhhhhcccchhhHHhhhhhhhhHHHHHHHHhhhhhccCC
Q 015514 309 RSSFKAYLNDWNGRGWALLAGL-------------LCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGILLFGEYRKS 375 (405)
Q Consensus 309 ~ss~~aY~~d~~gr~~a~LaG~-------------icg~Gn~lqfmggqaAGyA~s~avQa~plVst~WGv~lf~Efr~s 375 (405)
.+++..-.++--||.|.+++++ ++|-|.-++-.-.+ .|.-+++ -++.-+-+.+-|.++|.-=|-.
T Consensus 72 g~~~~tma~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~-~~~~i~~-~~~~llF~~~~~~iv~~gt~~v 149 (414)
T PRK10483 72 GSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAE-MSLNVPA-RAAGFGFALLVAFVVWLSTKAV 149 (414)
T ss_pred CCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh-cCCCCcH-HHHHHHHHHHHHHHHHhhhhHH
Confidence 3566554444447777776665 45555555444433 3333332 2455566677788888766777
Q ss_pred CcchhHHHHHHHHHHHHHHHHHH
Q 015514 376 SRRTYILLVSMLSMFIVAVAVLM 398 (405)
Q Consensus 376 s~~t~~LL~~Ml~~Fi~gv~ll~ 398 (405)
+|-...+...|.++|+.-+..+.
T Consensus 150 d~~n~~l~~~~i~~f~~~~~~l~ 172 (414)
T PRK10483 150 SRMTAIVLGAKVITFFLTFGSLL 172 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888899999998777643
No 58
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=20.93 E-value=6.8e+02 Score=24.48 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=53.7
Q ss_pred cccccchhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHH------HHHHHhcCCCCC
Q 015514 233 GKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALI------LNIRFLFSPILD 306 (405)
Q Consensus 233 ~~~~~~Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i------~N~~~m~~P~~g 306 (405)
..+..+=+..++.||+.+|+=.= +.....++.. +..|.+..--.-+.|++|..++-+. =|+..+--|...
T Consensus 17 ~~~~~~~~~~~~lAG~~ig~g~~-~~~~v~~~~~---~~~~g~~~l~~g~~F~~Gl~lIv~~g~eLfTgn~~~~~~~~~~ 92 (250)
T PF01226_consen 17 NRPPSKLFLRGILAGAFIGFGAL-LSLVVAAGFG---AENPGLAKLVGGLVFPIGLVLIVFLGGELFTGNMMVMTLALLN 92 (250)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCT---TSTHHHHHHHHHHHHTHHHHHHHHHT---TTTTCHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcC---cCCccHHHHHHHHHHHHHHHHHHHhcchhcccchHHHHHHHHc
Confidence 34566778889999999986544 4444434442 3344444445566788888776543 266666667777
Q ss_pred CCccchhhhhccCC
Q 015514 307 THRSSFKAYLNDWN 320 (405)
Q Consensus 307 ~p~ss~~aY~~d~~ 320 (405)
++ .|++++++-|-
T Consensus 93 ~~-~~~~~~l~~w~ 105 (250)
T PF01226_consen 93 KR-ISWKKLLRNWG 105 (250)
T ss_dssp TS-SSHHHHHHHHH
T ss_pred CC-CcHHHHHHHHH
Confidence 55 89999997553
No 59
>PF11676 DUF3272: Protein of unknown function (DUF3272); InterPro: IPR021690 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=20.91 E-value=58 Score=26.37 Aligned_cols=25 Identities=32% Similarity=0.651 Sum_probs=20.2
Q ss_pred hhh-hhhhhHHHHHHHHhhhhhccCC
Q 015514 351 ADA-VQALPLVSTFWGILLFGEYRKS 375 (405)
Q Consensus 351 s~a-vQa~plVst~WGv~lf~Efr~s 375 (405)
.++ -+|-=+.+.|||+++++..+.+
T Consensus 20 N~ai~~g~y~~A~Fw~~Ll~Rnl~~a 45 (61)
T PF11676_consen 20 NEAIMSGDYFFAFFWGFLLFRNLRVA 45 (61)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 455 4677789999999999998765
No 60
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=20.22 E-value=1.8e+02 Score=26.74 Aligned_cols=39 Identities=18% Similarity=0.349 Sum_probs=29.9
Q ss_pred CcceehhHHHHHHHHHHHHHHhhcccCCCC-cchhhhhhh
Q 015514 38 PQHTYLDYTMTNLLAAIIIAFTLGEFGDAR-PNFVYQLTE 76 (405)
Q Consensus 38 ~qhtY~DYsig~lL~All~A~TlGsiG~~~-~~Fl~qL~Q 76 (405)
|.+.|+|+.+-.++=.+-+++-+-.+|-+. |+|++.++|
T Consensus 42 p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~ 81 (154)
T TIGR01625 42 PLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKD 81 (154)
T ss_pred CcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 578888887777777766666666666544 999999998
No 61
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=20.11 E-value=76 Score=29.43 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=28.9
Q ss_pred CCCCCceeee---hhhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 015514 269 KKGVPHLIVY---TAFFYFSVSGFVIALILNIRFLFSPILD 306 (405)
Q Consensus 269 ~~gvp~Lt~Y---TA~F~Fsvg~f~~~~i~N~~~m~~P~~g 306 (405)
.+|.|.+-.- .-+|||.+.+++..+++|-++ |.|+.+
T Consensus 19 ~~gmp~ld~~t~~~q~~~~lI~F~iL~~ll~k~l-~~PI~~ 58 (181)
T PRK13454 19 APGMPQLDFSTFPNQIFWLLVTLVAIYFVLTRVA-LPRIGA 58 (181)
T ss_pred CCCCCCCcHHhcchHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5778877664 388999999999999998777 557644
Done!