Query 015514
Match_columns 405
No_of_seqs 89 out of 91
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 13:57:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 30.7 1.3E+02 0.0043 27.5 7.3 23 134-156 86-108 (438)
2 2i68_A Protein EMRE; transmemb 26.4 5.7 0.00019 34.3 -2.4 69 88-158 34-103 (137)
3 2i68_A Protein EMRE; transmemb 23.4 99 0.0034 26.4 4.8 52 326-377 34-87 (137)
4 2gfp_A EMRD, multidrug resista 19.9 1.8E+02 0.0062 26.0 6.0 31 129-160 56-86 (375)
5 3b5d_A Multidrug transporter E 19.9 1.4E+02 0.0048 24.1 4.8 53 322-374 29-84 (110)
6 2wjn_L Reaction center protein 18.8 3.3E+02 0.011 26.5 7.8 84 9-95 89-197 (274)
7 1rzh_L Reaction center protein 17.7 3.2E+02 0.011 26.7 7.5 84 9-95 88-196 (281)
8 2wjn_M Reaction center protein 17.7 3.6E+02 0.012 26.8 7.9 56 9-67 116-174 (324)
9 1eys_M Photosynthetic reaction 14.5 4.7E+02 0.016 26.0 7.9 57 9-68 116-175 (324)
10 1bnx_A Protein (BAND 3); human 13.7 1.5E+02 0.005 20.4 2.9 18 46-63 13-30 (34)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=30.73 E-value=1.3e+02 Score=27.46 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=12.3
Q ss_pred CCCCceeeecchhHHHHHHHHHh
Q 015514 134 DKINKAEILFPGIACFLVAVGLG 156 (405)
Q Consensus 134 ~~~n~a~iLF~GV~cflvAi~l~ 156 (405)
||.+|..++..|..+..++.++.
T Consensus 86 dr~g~r~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 86 KKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHH
Confidence 34445555555655555555554
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=26.38 E-value=5.7 Score=34.27 Aligned_cols=69 Identities=10% Similarity=0.100 Sum_probs=43.8
Q ss_pred HHhhHHHhhhHHHHHHHHHHhccceeeeecceeEEEEcceeeec-ccCCCCceeeecchhHHHHHHHHHhhh
Q 015514 88 MAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYF-LDDKINKAEILFPGIACFLVAVGLGSA 158 (405)
Q Consensus 88 maGGvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~NYf-ld~~~n~a~iLF~GV~cflvAi~l~a~ 158 (405)
++|.+...++-++..+++...++|++.|+-.++.-|+.+.+-++ ++.+.+. .-..|++++++.|++-..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~--~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL--PAIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHHhc
Confidence 46667777888999999999999999999556666666666643 4556533 336788888888887654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=23.41 E-value=99 Score=26.44 Aligned_cols=52 Identities=10% Similarity=-0.142 Sum_probs=28.2
Q ss_pred HhhhHHHhchhhhhhhcccchhhHHhhhh--hhhhHHHHHHHHhhhhhccCCCc
Q 015514 326 LLAGLLCGFGNGLQFMGGQAAGYAAADAV--QALPLVSTFWGILLFGEYRKSSR 377 (405)
Q Consensus 326 ~LaG~icg~Gn~lqfmggqaAGyA~s~av--Qa~plVst~WGv~lf~Efr~ss~ 377 (405)
+++.+.-+++..+-..+=+..+...+|++ =--|++++++|++++||=-+..+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~ 87 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA 87 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34444444555555555577777778875 45699999999999999765544
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=19.88 E-value=1.8e+02 Score=26.02 Aligned_cols=31 Identities=13% Similarity=0.380 Sum_probs=17.2
Q ss_pred eecccCCCCceeeecchhHHHHHHHHHhhhhh
Q 015514 129 NYFLDDKINKAEILFPGIACFLVAVGLGSAVH 160 (405)
Q Consensus 129 NYfld~~~n~a~iLF~GV~cflvAi~l~a~ah 160 (405)
-++.| |.+|-.++..|..+..++.++-+.++
T Consensus 56 g~l~d-r~g~r~~~~~~~~~~~~~~~~~~~~~ 86 (375)
T 2gfp_A 56 GPISD-RVGRRPVILVGMSIFMLATLVAVTTS 86 (375)
T ss_dssp HHHHT-TSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HhCCchhHHHHHHHHHHHHHHHHHhc
Confidence 34444 44455666666666666655555443
No 5
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=19.87 E-value=1.4e+02 Score=24.09 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=34.1
Q ss_pred chhHHhhhHHH-hchhhhhhhcccchhhHHhhhh--hhhhHHHHHHHHhhhhhccC
Q 015514 322 RGWALLAGLLC-GFGNGLQFMGGQAAGYAAADAV--QALPLVSTFWGILLFGEYRK 374 (405)
Q Consensus 322 r~~a~LaG~ic-g~Gn~lqfmggqaAGyA~s~av--Qa~plVst~WGv~lf~Efr~ 374 (405)
|.|-.+.++++ ++...+-..+=+......+|++ ---|+..+++|+++|||=-+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s 84 (110)
T 3b5d_A 29 RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD 84 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCC
Confidence 34444444443 4444444445566777777775 34688899999999999554
No 6
>2wjn_L Reaction center protein L chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_L* 2x5u_L* 2x5v_L* 4ac5_L* 3t6e_L* 1r2c_L* 1prc_L* 1vrn_L* 2jbl_L* 2prc_L* 3d38_L* 3g7f_L* 3prc_L* 2i5n_L* 3t6d_L* 5prc_L* 6prc_L* 7prc_L* 1dxr_L*
Probab=18.79 E-value=3.3e+02 Score=26.49 Aligned_cols=84 Identities=20% Similarity=0.365 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHH---HhhcccCCCC-------cchhhhhhhcc
Q 015514 9 GAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIA---FTLGEFGDAR-------PNFVYQLTELK 78 (405)
Q Consensus 9 ~AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A---~TlGsiG~~~-------~~Fl~qL~Q~~ 78 (405)
.+.+|..++.+|| |....+++.|-|= -.|.-|-|+..+.+.-++.- +-.||.++.- -++....+|-.
T Consensus 89 ~~~~~~~~~~~~w--~~R~~e~ar~LGm-g~hia~AFsaaI~~~~~l~lirPilmGsW~~g~P~GI~~hldw~~~f~~~y 165 (274)
T 2wjn_L 89 AITVCALGAFISW--MLREVEISRKLGI-GWHVPLAFCVPIFMFCVLQVFRPLLLGSWGHAFPYGILSHLDWVNNFGYQY 165 (274)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHTTC-CSHHHHHHHHHHHHHHHHHTHHHHHHTCGGGSCCBCTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHHHHhhcccccccccCCccchhhcchhHHHHHHh
Confidence 4677888888887 7888887776665 47888999988877655543 5678888876 35566665533
Q ss_pred CCc---------------hhHHHHHHhhHHHh
Q 015514 79 DNW---------------PSVLFAMAGGVVLS 95 (405)
Q Consensus 79 ~~~---------------~sv~~AmaGGvv~n 95 (405)
-|. ..+++||=|+.|+|
T Consensus 166 ~N~~ynPfHml~Iaf~fgsaLl~AmHGatIls 197 (274)
T 2wjn_L 166 LNWHYNPGHMSSVSFLFVNAMALGLHGGLILS 197 (274)
T ss_dssp SCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCcHHHHhhhhhhhhHHHHHhccchhhh
Confidence 443 34556666666665
No 7
>1rzh_L Reaction center protein L chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: f.26.1.1 PDB: 1rvj_L* 1ry5_L* 1rzz_L* 1s00_L* 2j8c_L* 1aig_L* 1ds8_L* 1dv3_L* 1dv6_L* 1e14_L* 1e6d_L* 1jgw_L* 1jgx_L* 1jgy_L* 1jgz_L* 1k6l_L* 1kby_L* 1l9b_L* 1l9j_L* 1m3x_L* ...
Probab=17.74 E-value=3.2e+02 Score=26.67 Aligned_cols=84 Identities=17% Similarity=0.220 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHH---HhhcccCCCC-------cchhhhhhhcc
Q 015514 9 GAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIA---FTLGEFGDAR-------PNFVYQLTELK 78 (405)
Q Consensus 9 ~AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A---~TlGsiG~~~-------~~Fl~qL~Q~~ 78 (405)
.+.+|+.++.+|| |....+++.|-|= -.|.-|-|+..+.+.-.+.- +-+|+.++.- -++....+|-.
T Consensus 88 ~~~~~~~~~~~~w--~~R~~e~ar~LGm-g~hva~AFsaaI~~~~~l~lirPilmGsW~~a~P~GI~~hldw~~~fs~~y 164 (281)
T 1rzh_L 88 IITICATGAFVSW--ALREVEICRKLGI-GYHIPFAFAFAILAYLTLVLFRPVMMGAWGYAFPYGIWTHLDWVSNTGYTY 164 (281)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHTC-CSHHHHHHHHHHHHHHHHHTHHHHHHTCGGGSCCBCTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHHHHhccccccccccCCcccccccchHHHHHHHh
Confidence 4677888888887 7888887766665 47888999988877655543 5678888876 35555555433
Q ss_pred CCc---------------hhHHHHHHhhHHHh
Q 015514 79 DNW---------------PSVLFAMAGGVVLS 95 (405)
Q Consensus 79 ~~~---------------~sv~~AmaGGvv~n 95 (405)
-|+ ..+++||=|+.|+|
T Consensus 165 ~N~~yNPfHmL~Iaf~fgsaLl~AmHGatIls 196 (281)
T 1rzh_L 165 GNFHYNPAHMIAISFFFTNALALALHGALVLS 196 (281)
T ss_dssp SCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCcHHHHhhhhhhhhHHHHHHhhhHhhh
Confidence 443 34556666666665
No 8
>2wjn_M Reaction center protein M chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_M* 2x5u_M* 2x5v_M* 4ac5_M* 3t6e_M* 1prc_M* 1r2c_M* 1vrn_M* 1dxr_M* 2jbl_M* 2prc_M* 3d38_M* 3prc_M* 2i5n_M* 5prc_M* 6prc_M* 7prc_M* 3g7f_M* 3t6d_M*
Probab=17.70 E-value=3.6e+02 Score=26.81 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHH---HhhcccCCCC
Q 015514 9 GAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIA---FTLGEFGDAR 67 (405)
Q Consensus 9 ~AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A---~TlGsiG~~~ 67 (405)
.+.+|..++.+|| |..+.+++.|-|= -.|.-|-|+..+.+.-++.- +-+||.++.-
T Consensus 116 ~~~f~~~~s~~~w--~~R~~e~ar~LGm-g~hva~AFsaaI~~~~~l~lirPilmGsWs~a~ 174 (324)
T 2wjn_M 116 MAGLFMTLSLGSW--WIRVYSRARALGL-GTHIAWNFAAAIFFVLCIGCIHPTLVGSWSEGV 174 (324)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHTTC-CSHHHHHHHHHHHHHHHHHTHHHHHHTCGGGSC
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHhCC-cchhHHHHHHHHHHHHHHHHHhhcccccccccC
Confidence 4677888888887 8888888777665 47899999988887665544 5679998876
No 9
>1eys_M Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: f.26.1.1
Probab=14.53 E-value=4.7e+02 Score=25.98 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHH---HhhcccCCCCc
Q 015514 9 GAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIA---FTLGEFGDARP 68 (405)
Q Consensus 9 ~AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A---~TlGsiG~~~~ 68 (405)
.+.+|..++.+|| |....+++.|-|= -.|.-|-|+..+.+.-.+.- +-+||.++.-|
T Consensus 116 ~~~~~~~~s~~~w--~~R~~e~ar~LGm-g~hia~AFsaaI~~~~~l~lirPilmGsWs~a~P 175 (324)
T 1eys_M 116 IAGLFLTLSILLW--WVRTYKRAEALGM-SQHLSWAFAAAIFFYLVLGFIRPVMMGSWAKAVP 175 (324)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHTTSC-CTHHHHHHHHHHHHHHHHHTHHHHHHTCGGGSCC
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHhCC-cchhhHHHHHHHHHHHHHHHHhhcccccccccCC
Confidence 4677888888887 8888888766665 47899999988877655543 56799988764
No 10
>1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide, electron transport; NMR {Synthetic} SCOP: j.35.1.1
Probab=13.74 E-value=1.5e+02 Score=20.40 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhccc
Q 015514 46 TMTNLLAAIIIAFTLGEF 63 (405)
Q Consensus 46 sig~lL~All~A~TlGsi 63 (405)
++=++.++++.++|||..
T Consensus 13 ~~fiyFa~l~PaIaFg~l 30 (34)
T 1bnx_A 13 VIFIYFAALSPAITFGGL 30 (34)
T ss_dssp HHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677788999999999964
Done!