Query 015514
Match_columns 405
No_of_seqs 89 out of 91
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 13:57:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015514.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015514hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l7va_ f.22.1.1 (A:) ABC tran 15.1 47 0.0034 29.9 3.3 67 39-105 12-81 (324)
2 d2d8xa2 g.39.1.3 (A:8-32) Pinc 13.2 19 0.0014 22.0 -0.0 9 258-266 13-21 (26)
3 d1eysl_ f.26.1.1 (L:) L (light 10.6 3.3E+02 0.024 24.3 7.6 56 9-67 96-154 (280)
4 d1nw1a_ d.144.1.8 (A:) Choline 9.9 53 0.0039 29.0 1.8 33 12-48 347-379 (395)
5 d1q90m_ f.23.25.1 (M:) PetM su 9.2 41 0.003 21.5 0.6 22 95-116 5-26 (34)
6 d1pv7a_ f.38.1.2 (A:) Lactose 7.9 4.5E+02 0.033 20.3 7.2 14 358-371 389-402 (417)
7 d2axtd1 f.26.1.1 (D:13-352) Ph 7.6 3E+02 0.022 25.2 6.1 58 7-67 99-159 (340)
8 d1otsa_ f.20.1.1 (A:) Clc chlo 7.0 5.1E+02 0.037 23.0 7.6 28 234-261 14-41 (444)
9 d1eysm_ f.26.1.1 (M:) M (mediu 6.4 6.1E+02 0.044 22.8 7.5 55 10-67 117-174 (318)
10 d2axti1 f.23.37.1 (I:1-35) Pho 6.0 77 0.0056 20.5 0.7 19 275-294 6-24 (35)
No 1
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=15.06 E-value=47 Score=29.86 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=47.4
Q ss_pred cceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhh---ccCCchhHHHHHHhhHHHhhhHHHHHHHH
Q 015514 39 QHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTE---LKDNWPSVLFAMAGGVVLSIGNLATQYAW 105 (405)
Q Consensus 39 qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q---~~~~~~sv~~AmaGGvv~nlgNl~lq~a~ 105 (405)
.+.++=-.+..++.+.++.+..|+..-+-.+.+++..| .|-..|-++.|++.|..+.++-.++|.-.
T Consensus 12 ~~~~l~~l~~ll~~~~~~sl~~G~~~i~~~~~~~~~~~~ii~~iRlPR~l~a~l~Ga~La~sG~~lQ~~~ 81 (324)
T d1l7va_ 12 NIRWLLCLSVLMLLALLLSLCAGEQWISPGDWFTPRGELFVWQIRLPRTLAVLLVGAALAISGAVMQALF 81 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHBSSSBCCSGGGSSTTTTTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHhcCccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445455566677777889989887666555544322 11456889999999999999999999643
No 2
>d2d8xa2 g.39.1.3 (A:8-32) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.15 E-value=19 Score=22.02 Aligned_cols=9 Identities=44% Similarity=0.863 Sum_probs=7.7
Q ss_pred Hhhcccccc
Q 015514 258 NLATNDQWH 266 (405)
Q Consensus 258 n~A~ndq~~ 266 (405)
-.|||.+||
T Consensus 13 ikamn~~wh 21 (26)
T d2d8xa2 13 IKAMNNSWH 21 (26)
T ss_dssp EEETTEEEC
T ss_pred HHHHhccCC
Confidence 378999999
No 3
>d1eysl_ f.26.1.1 (L:) L (light) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=10.58 E-value=3.3e+02 Score=24.32 Aligned_cols=56 Identities=9% Similarity=0.139 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHH---HhhcccCCCC
Q 015514 9 GAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIA---FTLGEFGDAR 67 (405)
Q Consensus 9 ~AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A---~TlGsiG~~~ 67 (405)
.+..|..++.++| |-.+.+.+.|-|- -.|.-|-|+..+.+.-++.- +-+|+-++.-
T Consensus 96 i~~ff~~~s~~~W--w~R~~e~ar~LGm-g~hva~AFsaaI~~~l~L~~irPilmGsWsea~ 154 (280)
T d1eysl_ 96 IITICAAGAFISW--ALREVEICRKLGI-GFHVPFAFSFAIGAYLVLVFVRPLLMGAWGHGF 154 (280)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHTTTC-CCHHHHHHHHHHHHHHHHHTHHHHHHTCGGGSC
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHhCC-cchhhHHHHHHHHHHHHHHhheecccccchhcc
Confidence 3677888888888 8888888777665 58999999998887765544 5678888876
No 4
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}
Probab=9.89 E-value=53 Score=28.96 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=25.3
Q ss_pred HHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHH
Q 015514 12 VCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMT 48 (405)
Q Consensus 12 ~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig 48 (405)
.+.++|-++||-|+-+|.-.+ . -++=|++|+..
T Consensus 347 ~~~~~s~l~W~lW~~iq~~~~---~-~~fDy~~Y~~~ 379 (395)
T d1nw1a_ 347 PFVPVSHFFWGVWGLLQVELS---P-VGFGFADYGRD 379 (395)
T ss_dssp GGHHHHHHHHHHHHHHHHHHC---C-SSSCHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHhhhhc---C-CCCCHHHHHHH
Confidence 467889999999999996332 2 46779999864
No 5
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=9.25 E-value=41 Score=21.49 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHhccceeeee
Q 015514 95 SIGNLATQYAWAFVGLSVTEVI 116 (405)
Q Consensus 95 nlgNl~lq~a~a~aGlSVa~pi 116 (405)
-.|.-++..++.++|++|.|++
T Consensus 5 iagta~tmig~tl~glaigfvl 26 (34)
T d1q90m_ 5 IAGTALTMVGMTLVGLAIGFVL 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHHHHHHHhh
Confidence 4567778888999999988864
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=7.90 E-value=4.5e+02 Score=20.34 Aligned_cols=14 Identities=14% Similarity=0.162 Sum_probs=6.0
Q ss_pred hHHHHHHHHhhhhh
Q 015514 358 PLVSTFWGILLFGE 371 (405)
Q Consensus 358 plVst~WGv~lf~E 371 (405)
.++.++..++..|+
T Consensus 389 ~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 389 ALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhcC
Confidence 33444444444443
No 7
>d2axtd1 f.26.1.1 (D:13-352) Photosystem II reaction center d2 protein PsbD2 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.62 E-value=3e+02 Score=25.18 Aligned_cols=58 Identities=7% Similarity=-0.061 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHH---HhhcccCCCC
Q 015514 7 KAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIA---FTLGEFGDAR 67 (405)
Q Consensus 7 ~~~AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A---~TlGsiG~~~ 67 (405)
+-.+..|.+++.+|| |-...+++.|-|- -.|.-|-|+..+.++..+.- +-.|+.++.-
T Consensus 99 w~ii~~~~~~~v~~w--~~R~~e~a~~LGm-g~~i~~AFsaaI~~~~~l~li~Pi~~Gsw~~~~ 159 (340)
T d2axtd1 99 WTFIALHGAFGLIGF--MLRQFEIARLVGV-RPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAP 159 (340)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHTC-CCTTTTTTHHHHHHHHHHTTHHHHHSSSGGGSC
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHhCC-cchhhhhhhHHHHHHHhhhheeecccccccccC
Confidence 345788888999998 8888888777665 47899999998887766544 5568888775
No 8
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=6.99 E-value=5.1e+02 Score=22.97 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=16.4
Q ss_pred ccccchhhHHHHHHHHHhhhhhhHHhhc
Q 015514 234 KSILIGLAITFFAGVCFSLFSPAFNLAT 261 (405)
Q Consensus 234 ~~~~~Gl~i~~~AGv~~s~Fsp~~n~A~ 261 (405)
+++++=++++++-|++.|+..=++...+
T Consensus 14 ~~~l~~~~la~liGi~~gl~~~~~~~~i 41 (444)
T d1otsa_ 14 KTPLAILFMAAVVGTLVGLAAVAFDKGV 41 (444)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666655555444
No 9
>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=6.36 E-value=6.1e+02 Score=22.83 Aligned_cols=55 Identities=16% Similarity=0.278 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHH---HhhcccCCCC
Q 015514 10 AIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIA---FTLGEFGDAR 67 (405)
Q Consensus 10 AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A---~TlGsiG~~~ 67 (405)
+.+|..++.+|| |-.+.+.+.|-|- -.|.=|-|+..+++.-++.- +-+|+-++.-
T Consensus 117 ~~~~~~~s~~~W--~~R~~e~ar~LGm-g~hv~~AF~~aI~~y~~l~~irPilmGsW~~a~ 174 (318)
T d1eysm_ 117 AGLFLTLSILLW--WVRTYKRAEALGM-SQHLSWAFAAAIFFYLVLGFIRPVMMGSWAKAV 174 (318)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHTTSC-CTHHHHHHHHHHHHHHHHHTHHHHHHTCGGGSC
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCC-chhHHHHHHHHHHHHHHHhhheecccccchhcc
Confidence 567777888876 7777777666555 58999999988887765543 5678888876
No 10
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.03 E-value=77 Score=20.49 Aligned_cols=19 Identities=32% Similarity=0.640 Sum_probs=10.2
Q ss_pred eeeehhhhHHHHHHHHHHHH
Q 015514 275 LIVYTAFFYFSVSGFVIALI 294 (405)
Q Consensus 275 Lt~YTA~F~Fsvg~f~~~~i 294 (405)
..|||...+| ++.|+.+++
T Consensus 6 i~Vy~vV~fF-v~lFiFGFL 24 (35)
T d2axti1 6 ITVYIVVTFF-VLLFVFGFL 24 (35)
T ss_dssp HHHHHHHHHH-HHHHHHHHH
T ss_pred EehhhHHHHH-HHHHHHhhc
Confidence 4567665444 455555544
Done!