Query 015515
Match_columns 405
No_of_seqs 252 out of 1938
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:02:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1855 Predicted RNA-binding 100.0 1.6E-48 3.4E-53 388.3 19.0 249 149-401 84-343 (484)
2 cd08032 LARP_7 La RNA-binding 99.9 2.9E-27 6.3E-32 191.1 5.4 80 195-274 3-82 (82)
3 cd08033 LARP_6 La RNA-binding 99.9 4.5E-27 9.8E-32 188.0 4.2 76 199-274 2-77 (77)
4 cd08035 LARP_4 La RNA-binding 99.9 1.7E-26 3.7E-31 183.0 4.1 74 198-273 1-74 (75)
5 cd08036 LARP_5 La RNA-binding 99.9 3.3E-26 7.2E-31 180.4 4.3 73 199-273 2-74 (75)
6 cd08029 LA_like_fungal La-moti 99.9 5E-26 1.1E-30 181.8 4.2 75 199-274 2-76 (76)
7 smart00715 LA Domain in the RN 99.9 6E-26 1.3E-30 183.2 4.4 80 195-275 1-80 (80)
8 cd08028 LARP_3 La RNA-binding 99.9 9.6E-26 2.1E-30 182.5 5.0 79 195-274 2-82 (82)
9 cd08030 LA_like_plant La-motif 99.9 1.7E-25 3.7E-30 183.5 4.5 77 198-274 2-90 (90)
10 cd08031 LARP_4_5_like La RNA-b 99.9 4.9E-25 1.1E-29 175.5 4.0 73 199-273 2-74 (75)
11 cd08037 LARP_1 La RNA-binding 99.9 2E-24 4.4E-29 170.6 4.0 72 199-274 2-73 (73)
12 cd08038 LARP_2 La RNA-binding 99.9 3.1E-24 6.7E-29 169.6 4.5 72 199-274 2-73 (73)
13 cd08034 LARP_1_2 La RNA-bindin 99.9 5.8E-24 1.3E-28 168.4 4.1 72 199-274 2-73 (73)
14 cd07323 LAM LA motif RNA-bindi 99.9 9.9E-24 2.1E-28 168.4 4.5 74 199-274 2-75 (75)
15 KOG2591 c-Mpl binding protein, 99.9 9.5E-23 2.1E-27 209.1 10.6 165 189-389 88-258 (684)
16 KOG4213 RNA-binding protein La 99.9 5.9E-22 1.3E-26 179.1 8.2 154 194-367 10-170 (205)
17 PF05383 La: La domain; Inter 99.8 1.7E-21 3.6E-26 149.6 1.7 60 201-260 1-61 (61)
18 PLN03134 glycine-rich RNA-bind 99.7 6.5E-16 1.4E-20 137.8 11.6 85 287-388 33-117 (144)
19 TIGR01659 sex-lethal sex-letha 99.6 1.8E-14 4E-19 145.5 15.0 116 249-385 158-275 (346)
20 KOG0121 Nuclear cap-binding pr 99.5 1.6E-14 3.4E-19 125.3 8.5 100 286-402 34-133 (153)
21 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 6.8E-14 1.5E-18 139.5 10.3 82 289-387 270-351 (352)
22 COG5193 LHP1 La protein, small 99.5 8.7E-15 1.9E-19 146.5 3.4 160 189-365 48-244 (438)
23 PF00076 RRM_1: RNA recognitio 99.5 1.5E-13 3.3E-18 104.8 7.2 70 291-378 1-70 (70)
24 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 3E-13 6.5E-18 134.9 9.3 79 288-383 3-81 (352)
25 TIGR01645 half-pint poly-U bin 99.4 8.9E-13 1.9E-17 141.1 13.4 120 249-385 158-284 (612)
26 TIGR01659 sex-lethal sex-letha 99.4 3.7E-13 7.9E-18 136.1 9.9 80 287-383 106-185 (346)
27 KOG0107 Alternative splicing f 99.4 6.6E-13 1.4E-17 120.6 8.4 79 288-388 10-88 (195)
28 PLN03120 nucleic acid binding 99.4 2.6E-12 5.6E-17 124.2 9.9 77 287-384 3-79 (260)
29 TIGR01648 hnRNP-R-Q heterogene 99.4 4.3E-12 9.2E-17 135.5 12.2 76 288-388 233-310 (578)
30 KOG0113 U1 small nuclear ribon 99.4 3E-12 6.5E-17 124.4 9.9 82 288-386 101-182 (335)
31 TIGR01628 PABP-1234 polyadenyl 99.3 9.8E-12 2.1E-16 132.4 12.3 82 287-386 284-365 (562)
32 KOG0122 Translation initiation 99.3 4.3E-12 9.4E-17 120.4 8.5 80 287-383 188-267 (270)
33 PF14259 RRM_6: RNA recognitio 99.3 5.1E-12 1.1E-16 97.5 7.2 68 291-376 1-68 (70)
34 TIGR01628 PABP-1234 polyadenyl 99.3 7.4E-12 1.6E-16 133.4 10.2 77 290-383 2-78 (562)
35 TIGR01642 U2AF_lg U2 snRNP aux 99.3 1.7E-11 3.7E-16 128.4 12.6 80 288-384 295-374 (509)
36 TIGR01622 SF-CC1 splicing fact 99.3 9.7E-12 2.1E-16 128.7 9.3 79 288-383 186-264 (457)
37 TIGR01645 half-pint poly-U bin 99.3 9.7E-12 2.1E-16 133.3 8.6 79 287-382 106-184 (612)
38 KOG0105 Alternative splicing f 99.2 1.6E-11 3.4E-16 112.6 8.0 79 287-385 5-83 (241)
39 smart00362 RRM_2 RNA recogniti 99.2 3.8E-11 8.3E-16 89.8 8.4 71 290-379 1-71 (72)
40 KOG0114 Predicted RNA-binding 99.2 3.6E-11 7.8E-16 101.1 8.9 77 287-383 17-93 (124)
41 TIGR01622 SF-CC1 splicing fact 99.2 2.7E-11 6E-16 125.3 10.1 81 285-383 86-166 (457)
42 KOG0149 Predicted RNA-binding 99.2 1.6E-11 3.4E-16 116.1 7.3 77 287-381 11-87 (247)
43 KOG0130 RNA-binding protein RB 99.2 3E-11 6.5E-16 105.9 7.6 86 285-387 69-154 (170)
44 TIGR01648 hnRNP-R-Q heterogene 99.2 5.6E-11 1.2E-15 127.0 11.0 68 287-372 57-124 (578)
45 PLN03121 nucleic acid binding 99.2 6.6E-11 1.4E-15 113.1 9.6 77 287-384 4-80 (243)
46 smart00360 RRM RNA recognition 99.2 9.2E-11 2E-15 87.3 8.1 70 293-379 1-70 (71)
47 KOG0117 Heterogeneous nuclear 99.2 1.1E-10 2.3E-15 118.7 10.9 84 286-386 81-167 (506)
48 PLN03213 repressor of silencin 99.2 6E-11 1.3E-15 121.7 9.0 77 286-383 8-86 (759)
49 COG0724 RNA-binding proteins ( 99.2 8.9E-11 1.9E-15 108.3 9.2 79 288-383 115-193 (306)
50 KOG0144 RNA-binding protein CU 99.2 3.8E-11 8.3E-16 121.5 7.2 161 194-390 47-211 (510)
51 KOG4207 Predicted splicing fac 99.2 4.9E-11 1.1E-15 111.0 7.2 78 289-383 14-91 (256)
52 KOG0126 Predicted RNA-binding 99.2 3E-12 6.5E-17 117.0 -0.9 83 285-384 32-114 (219)
53 KOG0117 Heterogeneous nuclear 99.2 1.9E-10 4.1E-15 116.9 11.8 140 220-384 181-330 (506)
54 KOG0108 mRNA cleavage and poly 99.1 8.3E-11 1.8E-15 121.7 8.1 82 289-387 19-100 (435)
55 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 1.3E-10 2.7E-15 122.3 9.5 75 288-385 2-78 (481)
56 KOG0148 Apoptosis-promoting RN 99.1 1.3E-10 2.8E-15 112.0 8.2 71 286-379 162-232 (321)
57 KOG0145 RNA-binding protein EL 99.1 1.2E-10 2.6E-15 111.6 7.8 119 249-388 92-212 (360)
58 KOG0125 Ataxin 2-binding prote 99.1 9.2E-11 2E-15 115.4 7.0 80 287-385 95-174 (376)
59 cd00590 RRM RRM (RNA recogniti 99.1 4.7E-10 1E-14 84.3 9.2 73 290-380 1-73 (74)
60 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 2.5E-10 5.4E-15 120.1 9.8 76 287-384 274-350 (481)
61 KOG0111 Cyclophilin-type pepti 99.1 6.8E-11 1.5E-15 111.0 4.7 88 286-390 8-95 (298)
62 KOG0148 Apoptosis-promoting RN 99.0 2.5E-10 5.4E-15 109.9 6.3 81 289-386 63-143 (321)
63 KOG0131 Splicing factor 3b, su 99.0 4.6E-10 1E-14 102.8 6.8 80 287-383 8-87 (203)
64 PF13893 RRM_5: RNA recognitio 99.0 1.3E-09 2.8E-14 81.1 7.4 55 305-381 1-55 (56)
65 KOG0144 RNA-binding protein CU 99.0 8.5E-10 1.8E-14 111.9 8.0 84 284-384 30-116 (510)
66 smart00361 RRM_1 RNA recogniti 98.9 2.1E-09 4.6E-14 84.0 7.0 63 302-379 2-69 (70)
67 KOG0127 Nucleolar protein fibr 98.9 2.2E-09 4.8E-14 111.4 7.4 163 203-385 20-196 (678)
68 KOG0127 Nucleolar protein fibr 98.9 2.6E-09 5.7E-14 110.9 7.8 81 288-385 292-378 (678)
69 KOG0123 Polyadenylate-binding 98.9 1E-08 2.2E-13 104.8 10.4 111 249-388 46-156 (369)
70 KOG0145 RNA-binding protein EL 98.9 5.1E-09 1.1E-13 100.6 7.5 81 288-385 41-121 (360)
71 KOG4212 RNA-binding protein hn 98.8 1.1E-08 2.3E-13 104.1 9.5 80 286-383 42-122 (608)
72 TIGR01642 U2AF_lg U2 snRNP aux 98.8 5.5E-09 1.2E-13 109.6 7.5 74 285-382 172-257 (509)
73 KOG0131 Splicing factor 3b, su 98.8 5.8E-09 1.3E-13 95.7 6.5 170 192-403 20-190 (203)
74 KOG0132 RNA polymerase II C-te 98.8 7.2E-09 1.6E-13 111.2 7.4 82 285-389 418-499 (894)
75 KOG4208 Nucleolar RNA-binding 98.8 1.3E-08 2.9E-13 94.8 7.8 82 287-385 48-130 (214)
76 KOG0153 Predicted RNA-binding 98.8 4.1E-08 8.9E-13 97.6 10.4 81 284-388 224-304 (377)
77 KOG0109 RNA-binding protein LA 98.7 1.7E-08 3.7E-13 98.3 6.5 75 287-386 77-151 (346)
78 KOG0124 Polypyrimidine tract-b 98.7 1.1E-08 2.3E-13 102.2 5.2 76 289-381 114-189 (544)
79 KOG1924 RhoA GTPase effector D 98.7 7E-08 1.5E-12 103.9 10.2 32 77-109 570-601 (1102)
80 KOG2590 RNA-binding protein LA 98.7 1.6E-08 3.5E-13 104.7 5.3 64 198-268 301-364 (448)
81 KOG0109 RNA-binding protein LA 98.6 3.1E-08 6.6E-13 96.6 5.2 71 290-385 4-74 (346)
82 KOG0415 Predicted peptidyl pro 98.6 5.8E-08 1.3E-12 96.7 6.9 79 287-382 238-316 (479)
83 KOG4206 Spliceosomal protein s 98.6 1E-07 2.3E-12 90.0 8.3 78 289-386 10-91 (221)
84 KOG0147 Transcriptional coacti 98.6 6.1E-08 1.3E-12 101.1 7.0 79 291-386 281-359 (549)
85 KOG0110 RNA-binding protein (R 98.6 1.8E-07 3.9E-12 100.0 9.2 80 290-383 517-596 (725)
86 KOG4205 RNA-binding protein mu 98.6 4.8E-08 1E-12 97.4 4.6 149 204-386 22-177 (311)
87 KOG0116 RasGAP SH3 binding pro 98.6 1.3E-07 2.8E-12 97.8 7.6 78 288-383 288-365 (419)
88 KOG0106 Alternative splicing f 98.5 9.7E-08 2.1E-12 90.5 4.7 72 290-388 3-74 (216)
89 KOG1924 RhoA GTPase effector D 98.5 2.7E-07 5.9E-12 99.4 8.1 10 89-98 594-603 (1102)
90 COG5193 LHP1 La protein, small 98.5 3.4E-08 7.4E-13 99.7 1.2 61 198-260 271-331 (438)
91 KOG0123 Polyadenylate-binding 98.5 9.3E-08 2E-12 97.8 3.9 86 286-389 268-353 (369)
92 KOG4209 Splicing factor RNPS1, 98.5 3.6E-07 7.9E-12 87.8 7.7 86 283-386 96-181 (231)
93 KOG4212 RNA-binding protein hn 98.5 3.1E-07 6.6E-12 93.7 6.8 74 287-382 535-608 (608)
94 KOG0124 Polypyrimidine tract-b 98.4 1.3E-06 2.8E-11 87.6 9.1 111 253-380 168-285 (544)
95 KOG0146 RNA-binding protein ET 98.4 4.4E-07 9.4E-12 87.8 5.5 86 285-387 282-367 (371)
96 KOG4660 Protein Mei2, essentia 98.3 3.5E-07 7.6E-12 95.6 4.5 72 285-378 72-143 (549)
97 KOG0110 RNA-binding protein (R 98.3 1.6E-06 3.5E-11 92.9 9.2 77 288-381 613-689 (725)
98 KOG4454 RNA binding protein (R 98.2 9.9E-07 2.1E-11 83.3 2.8 79 287-384 8-86 (267)
99 KOG0146 RNA-binding protein ET 98.2 3.4E-06 7.4E-11 81.7 6.2 82 285-384 16-100 (371)
100 KOG0533 RRM motif-containing p 98.2 7.5E-06 1.6E-10 79.2 8.6 79 288-384 83-161 (243)
101 KOG4661 Hsp27-ERE-TATA-binding 98.1 7.9E-06 1.7E-10 85.8 8.5 81 287-384 404-484 (940)
102 KOG4205 RNA-binding protein mu 98.1 5E-06 1.1E-10 83.1 5.4 63 287-366 5-67 (311)
103 KOG4206 Spliceosomal protein s 98.0 8.7E-06 1.9E-10 77.1 6.6 163 198-382 23-219 (221)
104 KOG1548 Transcription elongati 97.9 3.5E-05 7.6E-10 77.0 7.5 89 284-383 130-219 (382)
105 PF11608 Limkain-b1: Limkain b 97.8 0.00015 3.2E-09 59.3 8.1 67 289-382 3-74 (90)
106 KOG1457 RNA binding protein (c 97.7 0.00021 4.5E-09 68.0 9.9 80 288-383 34-116 (284)
107 PF08777 RRM_3: RNA binding mo 97.7 0.00011 2.4E-09 62.5 7.4 73 289-384 2-79 (105)
108 KOG0151 Predicted splicing reg 97.7 4E-05 8.7E-10 82.4 5.7 82 285-380 171-252 (877)
109 KOG0147 Transcriptional coacti 97.7 2.3E-05 5E-10 82.2 3.0 82 283-382 174-255 (549)
110 KOG4211 Splicing factor hnRNP- 97.7 0.00015 3.3E-09 75.3 8.5 75 288-383 10-84 (510)
111 KOG1190 Polypyrimidine tract-b 97.6 0.00031 6.7E-09 71.7 9.5 74 289-384 298-372 (492)
112 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00022 4.8E-09 53.2 5.6 52 289-364 2-53 (53)
113 KOG4211 Splicing factor hnRNP- 97.5 0.00026 5.7E-09 73.6 7.3 74 287-379 102-176 (510)
114 KOG1995 Conserved Zn-finger pr 97.4 0.00021 4.5E-09 71.9 6.1 91 287-386 65-155 (351)
115 KOG0226 RNA-binding proteins [ 97.4 0.00014 3.1E-09 70.2 4.7 77 287-380 189-265 (290)
116 PF04059 RRM_2: RNA recognitio 97.4 0.00092 2E-08 56.2 8.0 67 289-372 2-70 (97)
117 KOG0106 Alternative splicing f 97.3 0.00013 2.8E-09 69.4 2.6 70 286-380 97-166 (216)
118 KOG1457 RNA binding protein (c 97.3 0.00029 6.2E-09 67.1 4.3 62 289-371 211-272 (284)
119 KOG1548 Transcription elongati 97.2 0.0013 2.8E-08 66.0 8.2 78 286-384 263-351 (382)
120 KOG2314 Translation initiation 97.1 0.0011 2.3E-08 70.2 7.5 79 287-383 57-142 (698)
121 COG5175 MOT2 Transcriptional r 97.0 0.0013 2.9E-08 65.8 6.7 82 286-381 112-199 (480)
122 KOG4210 Nuclear localization s 97.0 0.00085 1.9E-08 66.6 4.9 78 289-384 185-263 (285)
123 KOG4307 RNA binding protein RB 96.8 0.0026 5.7E-08 68.7 7.0 76 289-382 868-944 (944)
124 KOG0120 Splicing factor U2AF, 96.7 0.0014 2.9E-08 69.4 3.7 80 287-383 288-367 (500)
125 KOG0105 Alternative splicing f 96.6 0.013 2.9E-07 54.6 8.9 64 289-376 116-179 (241)
126 KOG0129 Predicted RNA-binding 96.5 0.009 2E-07 62.8 8.0 69 286-369 257-328 (520)
127 KOG3152 TBP-binding protein, a 96.1 0.0035 7.5E-08 60.8 2.4 83 288-375 74-156 (278)
128 PF05172 Nup35_RRM: Nup53/35/4 96.1 0.018 3.9E-07 48.7 6.3 76 287-374 5-80 (100)
129 PF15023 DUF4523: Protein of u 95.9 0.035 7.6E-07 49.8 7.8 77 287-388 85-165 (166)
130 KOG0120 Splicing factor U2AF, 95.9 0.021 4.6E-07 60.6 7.2 63 303-379 424-486 (500)
131 KOG1190 Polypyrimidine tract-b 95.8 0.0056 1.2E-07 62.8 2.6 53 287-362 27-79 (492)
132 KOG1456 Heterogeneous nuclear 95.7 0.041 8.9E-07 56.1 8.2 74 288-383 287-361 (494)
133 KOG2202 U2 snRNP splicing fact 95.6 0.007 1.5E-07 58.7 2.2 62 302-381 82-144 (260)
134 PF07145 PAM2: Ataxin-2 C-term 95.6 0.0082 1.8E-07 35.2 1.6 16 36-51 2-17 (18)
135 PF08952 DUF1866: Domain of un 95.2 0.042 9.1E-07 49.4 5.8 60 303-388 51-110 (146)
136 KOG4307 RNA binding protein RB 95.0 1.4 3E-05 48.6 17.4 80 288-385 434-514 (944)
137 KOG0128 RNA-binding protein SA 94.9 0.015 3.3E-07 64.3 2.5 79 288-384 736-814 (881)
138 KOG0129 Predicted RNA-binding 94.9 0.061 1.3E-06 56.8 6.8 62 288-366 370-432 (520)
139 PF10309 DUF2414: Protein of u 94.8 0.12 2.7E-06 40.0 6.6 55 288-367 5-62 (62)
140 KOG2068 MOT2 transcription fac 94.8 0.014 3.1E-07 58.6 1.7 82 286-381 75-159 (327)
141 PF09421 FRQ: Frequency clock 94.0 0.034 7.4E-07 62.7 2.8 52 224-275 471-523 (989)
142 KOG1996 mRNA splicing factor [ 93.9 0.077 1.7E-06 52.7 4.7 64 302-381 300-363 (378)
143 KOG1365 RNA-binding protein Fu 93.9 0.15 3.3E-06 52.2 6.8 60 289-367 162-226 (508)
144 KOG0112 Large RNA-binding prot 93.8 0.017 3.6E-07 64.3 -0.1 79 286-382 370-448 (975)
145 KOG0115 RNA-binding protein p5 93.7 0.084 1.8E-06 51.5 4.5 68 289-374 32-99 (275)
146 KOG1923 Rac1 GTPase effector F 93.5 0.23 5.1E-06 54.8 7.9 16 191-206 387-402 (830)
147 KOG0112 Large RNA-binding prot 93.0 0.12 2.6E-06 57.8 4.8 76 286-384 453-530 (975)
148 PF08675 RNA_bind: RNA binding 93.0 0.32 6.9E-06 40.0 6.0 65 290-383 10-74 (87)
149 KOG4849 mRNA cleavage factor I 92.7 0.13 2.8E-06 52.1 4.2 71 289-376 81-153 (498)
150 KOG0128 RNA-binding protein SA 92.6 0.012 2.6E-07 65.1 -3.4 66 287-369 666-731 (881)
151 KOG1456 Heterogeneous nuclear 92.5 0.38 8.3E-06 49.3 7.2 67 295-383 129-197 (494)
152 KOG2416 Acinus (induces apopto 92.1 0.12 2.6E-06 55.5 3.3 72 287-382 443-519 (718)
153 KOG1819 FYVE finger-containing 92.0 0.076 1.6E-06 56.0 1.6 10 155-164 595-604 (990)
154 KOG1365 RNA-binding protein Fu 91.6 0.22 4.8E-06 51.1 4.4 67 288-372 280-349 (508)
155 KOG4574 RNA-binding protein (c 90.9 0.14 3.1E-06 56.9 2.4 70 292-384 302-371 (1007)
156 KOG4676 Splicing factor, argin 90.5 0.33 7.1E-06 50.0 4.4 78 289-381 8-85 (479)
157 PF07576 BRAP2: BRCA1-associat 89.7 2.4 5.2E-05 36.5 8.4 65 290-373 15-80 (110)
158 KOG4210 Nuclear localization s 88.1 0.43 9.3E-06 47.5 3.3 79 287-382 87-165 (285)
159 KOG1819 FYVE finger-containing 87.6 0.34 7.4E-06 51.3 2.2 19 146-164 583-601 (990)
160 KOG1923 Rac1 GTPase effector F 87.3 2.6 5.7E-05 46.9 8.8 15 348-362 605-619 (830)
161 KOG2318 Uncharacterized conser 85.5 2.4 5.2E-05 45.8 7.2 91 287-381 173-302 (650)
162 KOG2278 RNA:NAD 2'-phosphotran 85.4 0.53 1.2E-05 43.6 2.0 40 223-262 26-65 (207)
163 KOG1830 Wiskott Aldrich syndro 85.0 8.5 0.00019 40.3 10.6 6 196-201 458-463 (518)
164 PF03467 Smg4_UPF3: Smg-4/UPF3 84.8 0.86 1.9E-05 42.2 3.2 71 287-372 6-80 (176)
165 PF04847 Calcipressin: Calcipr 83.8 1.8 3.9E-05 40.5 4.9 59 301-382 8-68 (184)
166 PF11767 SET_assoc: Histone ly 83.8 2.1 4.5E-05 33.6 4.4 48 299-372 11-58 (66)
167 KOG0804 Cytoplasmic Zn-finger 82.4 3.5 7.5E-05 43.4 6.6 68 288-374 74-142 (493)
168 KOG4285 Mitotic phosphoprotein 80.5 4.7 0.0001 40.5 6.6 62 288-374 197-258 (350)
169 KOG1830 Wiskott Aldrich syndro 80.5 20 0.00044 37.7 11.3 6 220-225 459-464 (518)
170 KOG2135 Proteins containing th 80.2 0.92 2E-05 47.8 1.7 75 286-384 370-445 (526)
171 PF01885 PTS_2-RNA: RNA 2'-pho 78.5 1.3 2.8E-05 41.4 2.0 52 225-276 26-82 (186)
172 KOG4849 mRNA cleavage factor I 75.4 18 0.00039 37.2 9.1 13 189-201 353-365 (498)
173 KOG2193 IGF-II mRNA-binding pr 74.9 3.2 7E-05 43.4 3.8 59 290-371 3-61 (584)
174 PRK00819 RNA 2'-phosphotransfe 74.8 2.2 4.7E-05 39.8 2.3 84 224-313 26-113 (179)
175 KOG4676 Splicing factor, argin 74.6 0.81 1.8E-05 47.2 -0.6 63 284-368 148-210 (479)
176 COG5178 PRP8 U5 snRNP spliceos 74.4 2.6 5.7E-05 48.9 3.2 16 248-263 221-236 (2365)
177 KOG2253 U1 snRNP complex, subu 74.1 2.1 4.6E-05 46.8 2.3 69 287-381 39-107 (668)
178 COG5178 PRP8 U5 snRNP spliceos 72.3 2.8 6E-05 48.8 2.7 14 117-130 82-95 (2365)
179 KOG2891 Surface glycoprotein [ 70.5 1.3 2.8E-05 43.9 -0.2 33 289-321 150-194 (445)
180 KOG4660 Protein Mei2, essentia 68.1 9.2 0.0002 41.2 5.4 27 345-371 429-455 (549)
181 PF03880 DbpA: DbpA RNA bindin 66.1 28 0.00061 27.2 6.7 58 299-382 12-74 (74)
182 COG0724 RNA-binding proteins ( 64.7 19 0.00041 32.7 6.3 35 287-321 224-258 (306)
183 PF03468 XS: XS domain; Inter 61.4 17 0.00036 31.5 4.9 50 289-358 9-67 (116)
184 PF03276 Gag_spuma: Spumavirus 60.1 44 0.00094 36.3 8.6 10 304-313 418-427 (582)
185 PF10567 Nab6_mRNP_bdg: RNA-re 54.3 33 0.00071 34.5 6.2 70 286-365 13-82 (309)
186 PTZ00315 2'-phosphotransferase 53.6 9.4 0.0002 41.8 2.5 53 224-276 398-456 (582)
187 PF00398 RrnaAD: Ribosomal RNA 48.6 9.2 0.0002 37.2 1.4 115 189-320 10-131 (262)
188 KOG4483 Uncharacterized conser 44.5 59 0.0013 34.1 6.4 53 290-366 393-446 (528)
189 KOG2675 Adenylate cyclase-asso 44.4 21 0.00045 37.7 3.2 16 204-219 335-350 (480)
190 PF03276 Gag_spuma: Spumavirus 43.6 97 0.0021 33.8 8.0 8 108-115 259-266 (582)
191 KOG1925 Rac1 GTPase effector F 41.0 34 0.00073 36.9 4.2 10 289-298 520-529 (817)
192 PRK15319 AIDA autotransporter- 40.7 53 0.0012 40.6 6.1 7 236-242 1864-1870(2039)
193 PF08544 GHMP_kinases_C: GHMP 38.0 1.3E+02 0.0028 23.1 6.3 46 302-369 36-81 (85)
194 KOG3423 Transcription initiati 35.9 60 0.0013 30.1 4.5 97 193-314 68-167 (176)
195 PF11823 DUF3343: Protein of u 34.6 61 0.0013 25.2 3.9 30 349-383 3-32 (73)
196 PRK14548 50S ribosomal protein 34.5 1.2E+02 0.0026 24.9 5.6 53 295-367 27-81 (84)
197 PRK11634 ATP-dependent RNA hel 31.7 1.1E+02 0.0024 33.9 6.6 37 347-384 526-562 (629)
198 cd04904 ACT_AAAH ACT domain of 30.4 2.6E+02 0.0056 21.6 7.3 53 300-370 12-66 (74)
199 KOG4410 5-formyltetrahydrofola 30.3 1E+02 0.0022 31.1 5.3 57 289-368 331-395 (396)
200 TIGR03636 L23_arch archaeal ri 29.1 1.8E+02 0.0039 23.4 5.7 57 291-367 16-74 (77)
201 KOG2893 Zn finger protein [Gen 28.8 2.9E+02 0.0064 27.2 8.0 74 47-120 123-202 (341)
202 PF07292 NID: Nmi/IFP 35 domai 27.8 35 0.00076 28.3 1.4 24 285-308 49-72 (88)
203 KOG2391 Vacuolar sorting prote 27.2 1E+02 0.0022 31.7 4.9 16 193-208 215-230 (365)
204 KOG2193 IGF-II mRNA-binding pr 26.6 17 0.00037 38.3 -0.7 81 285-385 77-157 (584)
205 PF15513 DUF4651: Domain of un 25.1 83 0.0018 24.5 2.9 19 302-320 8-26 (62)
206 PRK06545 prephenate dehydrogen 24.1 2.2E+02 0.0048 28.9 6.8 61 290-369 292-353 (359)
207 KOG0162 Myosin class I heavy c 23.9 1.8E+02 0.0038 33.2 6.2 13 226-238 1092-1104(1106)
208 PRK11901 hypothetical protein; 23.4 1.3E+02 0.0029 30.7 4.8 58 290-369 247-306 (327)
209 PRK09752 adhesin; Provisional 23.0 87 0.0019 37.2 3.9 12 234-245 1081-1092(1250)
210 COG2608 CopZ Copper chaperone 22.9 2.9E+02 0.0063 21.3 5.8 45 289-356 4-48 (71)
211 PF03439 Spt5-NGN: Early trans 22.6 78 0.0017 25.5 2.6 23 347-369 44-66 (84)
212 KOG2590 RNA-binding protein LA 21.5 24 0.00051 37.6 -0.9 62 199-260 101-163 (448)
213 PF00403 HMA: Heavy-metal-asso 20.9 3.3E+02 0.0072 19.7 7.5 54 290-366 1-58 (62)
214 PF14893 PNMA: PNMA 20.7 76 0.0016 32.5 2.6 24 288-311 18-41 (331)
215 KOG2675 Adenylate cyclase-asso 20.1 99 0.0022 32.8 3.3 10 351-360 454-463 (480)
No 1
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=100.00 E-value=1.6e-48 Score=388.26 Aligned_cols=249 Identities=41% Similarity=0.581 Sum_probs=216.3
Q ss_pred CCCCCCCCCCCCCcccCcc-ccccccCCCCCcccccccccc-------CCCCCChHHHHHHhhcccccccCCCCCCCHHH
Q 015515 149 HRHQNHHHNNNNSHHQNNQ-YEDQQEGEVPGVKDKKEKKDH-------QHGGLNDESIQKVLNQVEYYFSDLNLATTDHL 220 (405)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~e~~~kI~kQvEfYFSD~NL~~D~fL 220 (405)
..++..++.++|+|..+.+ .......+...+....++++. +...+++|+..||++||||||||.||.+|+||
T Consensus 84 n~~~~~~~~~~R~~~~~~q~~~v~~pqe~e~~~~p~de~~~~~~~s~dsk~~lsedl~~kIv~QVEyyFSDenL~~d~fL 163 (484)
T KOG1855|consen 84 NSPSLSDKRPVRGHGETKQEGGVEPPQEKEQEVKPHDEQDTKEIDSLDSKLILSEDLAAKIVDQVEYYFSDENLLKDAFL 163 (484)
T ss_pred CCcccccceeccCCcchhhccCCCCccccccccCcchhcchhhcccccccccccHHHHHHHHHHhheeeccccccchHHH
Confidence 3467788899999998777 555555555555555555444 47788999999999999999999999999999
Q ss_pred HhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeeccccccccCCCCcchhhhhhcceeEEeeCCCccc
Q 015515 221 IRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDH 300 (405)
Q Consensus 221 ~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsedg~kVRR~~Pl~e~~~~~~~~rtVyV~nLP~d~ 300 (405)
++.|.++.+|||+|++|++|+|||+||+|+.+|+.||+.|.+|+|++||++|||..|+++.+.+++.+|||+|.|||.|.
T Consensus 164 lkhvrrnkeGyVpv~~vaSFKKvK~LTrd~~~va~ALr~S~kL~vseDgkKVrRisPlp~~~~eel~srtivaenLP~Dh 243 (484)
T KOG1855|consen 164 LKHVRRNKEGYVPVKLVASFKKVKALTRDWKLVADALRKSSKLEVSEDGKKVRRISPLPEFDEEELPSRTIVAENLPLDH 243 (484)
T ss_pred HHHHhcCCCCceeeehhhhHHHHHHHhhhhHHHHHHHhhcceEEEccCCceeeecCCCCCccccccccceEEEecCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEE
Q 015515 301 CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVR 380 (405)
Q Consensus 301 t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~glkV~ 380 (405)
+.|+|++||+.||.|+.||||.++ .+|.++|....+..+...|-||||||+..+.|.||.+.|+.+..|+.||+|+
T Consensus 244 ~~enl~kiFg~~G~IksIRIckPg----aip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 244 SYENLSKIFGTVGSIKSIRICKPG----AIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQNWRMGLKVK 319 (484)
T ss_pred HHHHHHHHhhcccceeeeeecCCC----CCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhhhhhhcchhh
Confidence 999999999999999999999885 3567777666544555679999999999999999999999999999999999
Q ss_pred EcccCCCCCC---CCCCCCCCCCC
Q 015515 381 LMLRRGSKPA---QVKGKKGPEGE 401 (405)
Q Consensus 381 ll~~~~~K~~---~grg~~Gg~~~ 401 (405)
|+..+..|.. .+|++.|-+.+
T Consensus 320 Ll~k~a~K~~~~~~~R~~~g~~~d 343 (484)
T KOG1855|consen 320 LLGKKAPKIQIAAPVRSRGGSFSD 343 (484)
T ss_pred hhhccCcccccccccccccccccC
Confidence 9998766643 24555554444
No 2
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=99.94 E-value=2.9e-27 Score=191.09 Aligned_cols=80 Identities=30% Similarity=0.552 Sum_probs=77.8
Q ss_pred hHHHHHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeecccccccc
Q 015515 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (405)
Q Consensus 195 ~e~~~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsedg~kVRR 274 (405)
.+++++|++||||||||+||.+|.||+++|.++.||||+|++|++|+|||+|+.|.+.|++||+.|..|+|++||++|||
T Consensus 3 ~~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VRR 82 (82)
T cd08032 3 KQLLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELNLEGTRIRR 82 (82)
T ss_pred HHHHHHHHHHHHhhcchhhcccCHHHHHHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHhcCCEEEEcCCCCccCC
Confidence 56889999999999999999999999999998999999999999999999999999999999999999999999999998
No 3
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.93 E-value=4.5e-27 Score=188.04 Aligned_cols=76 Identities=55% Similarity=0.873 Sum_probs=74.6
Q ss_pred HHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeecccccccc
Q 015515 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (405)
Q Consensus 199 ~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsedg~kVRR 274 (405)
++|++||||||||+||.+|.||+++|.++.||||+|++|++|+|||+|+.|.+.|.+||+.|..|+|++||++|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~~S~~lev~~d~~~VRR 77 (77)
T cd08033 2 QKIVKQVEYYFSDENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALRRSSKLVVSEDGKKVRR 77 (77)
T ss_pred hHHHhHHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999998
No 4
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.93 E-value=1.7e-26 Score=183.03 Aligned_cols=74 Identities=34% Similarity=0.493 Sum_probs=71.0
Q ss_pred HHHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeeccccccc
Q 015515 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIK 273 (405)
Q Consensus 198 ~~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsedg~kVR 273 (405)
+++|++||||||||+||.+|.||+++| +.||||||++|++|+||++|+.|++.|++||+.|..|+|++||++||
T Consensus 1 ~e~i~~QvEyYFSd~NL~~D~fL~~~m--d~~G~Vpi~~iasF~rik~lt~d~~~I~~AL~~S~~levsedg~kVR 74 (75)
T cd08035 1 RECLKKQLEFCFSRENLSKDLYLISQM--DSDQFVPIWTVANMEGIKKLTTDMDLILDVLRSSPMVQVDETGEKVR 74 (75)
T ss_pred ChHHHhhHHhhcCHhhcccCHHHHHhh--CcCCCEehHHHhccHHHHHhcCCHHHHHHHHHcCCeEEEcCCCCccC
Confidence 368999999999999999999999984 68999999999999999999999999999999999999999999998
No 5
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.92 E-value=3.3e-26 Score=180.36 Aligned_cols=73 Identities=33% Similarity=0.499 Sum_probs=70.5
Q ss_pred HHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeeccccccc
Q 015515 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIK 273 (405)
Q Consensus 199 ~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsedg~kVR 273 (405)
+.|++||||||||+||.+|.||+++| +.||||||.+|++|+|||+|+.|.+.|.+||++|..|+|+++|++||
T Consensus 2 e~i~kQvEyYFS~~NL~~D~fLr~~m--d~~g~Vpi~~ia~F~rik~Lt~D~~lI~~aL~~S~~vevse~g~kVR 74 (75)
T cd08036 2 ELLKKTLEFCLSRENLASDMYLISQM--DSDQYVPIMTVANLDHIKKLSTDVDLIVDVLRSLPLVQVDEKGEKVR 74 (75)
T ss_pred hhhhcceeeeechhhccccHHHHHHh--ccCCCEehHHHhccHHHHHhcCCHHHHHHHHhhCCeEEECCCCCccC
Confidence 67999999999999999999999995 67999999999999999999999999999999999999999999997
No 6
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.92 E-value=5e-26 Score=181.79 Aligned_cols=75 Identities=40% Similarity=0.650 Sum_probs=72.5
Q ss_pred HHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeecccccccc
Q 015515 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (405)
Q Consensus 199 ~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsedg~kVRR 274 (405)
++|++||||||||+||.+|.||+++|.++.||||+|++|++|+|||+|+.+ +.|++||+.|..|+|++||++|||
T Consensus 2 ~~I~~QvEfYFSd~NL~~D~fLr~~~~~~~~G~Vpl~~i~~F~rmk~l~~~-~~i~~Al~~S~~lev~~d~~~VRR 76 (76)
T cd08029 2 EEIRKQVEFYFSDSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMRRFQPL-EAVVEALRESELLEVSEDGENVRR 76 (76)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhCchHHHHcCCH-HHHHHHHHhCCeEEEeCCCCcccC
Confidence 589999999999999999999999999899999999999999999999865 999999999999999999999998
No 7
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=99.92 E-value=6e-26 Score=183.16 Aligned_cols=80 Identities=49% Similarity=0.745 Sum_probs=77.0
Q ss_pred hHHHHHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeecccccccc
Q 015515 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (405)
Q Consensus 195 ~e~~~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsedg~kVRR 274 (405)
++++++|++||||||||+||.+|.||+++|..+ +|||+|++|++|+|||+++.|.+.|++||+.|..|+|++||++|||
T Consensus 1 ~~~~~~i~~QvEfYFSd~NL~~D~fLr~~~~~~-~g~Vpl~~i~~F~r~k~l~~d~~~i~~Al~~S~~lel~~d~~~VRR 79 (80)
T smart00715 1 EELKQKIKKQVEYYFSDENLPRDKFLRKKMDKN-DGYVPISTIASFKRVKSLTTDVNLIVEALRSSPKLEVSEDGLKVRR 79 (80)
T ss_pred ChHHHHHHHHHHHHcCHhhhhhCHHHHHHhccC-CCCEEhHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCeeCc
Confidence 367899999999999999999999999999877 9999999999999999999999999999999999999999999998
Q ss_pred C
Q 015515 275 Q 275 (405)
Q Consensus 275 ~ 275 (405)
.
T Consensus 80 ~ 80 (80)
T smart00715 80 R 80 (80)
T ss_pred C
Confidence 4
No 8
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=99.92 E-value=9.6e-26 Score=182.45 Aligned_cols=79 Identities=38% Similarity=0.668 Sum_probs=75.9
Q ss_pred hHHHHHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccc--cceeecccccc
Q 015515 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS--KLVVSEDGKKI 272 (405)
Q Consensus 195 ~e~~~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~--~LeVsedg~kV 272 (405)
+++..+|++||||||||+||.+|.||+++|..+ +|||+|++|++|+|||+|+.|.+.|.+||+.|+ .|+|++||++|
T Consensus 2 ~~l~~~I~~QvEfYFSd~NL~~D~fLr~~m~~~-~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~~~lev~~d~~~V 80 (82)
T cd08028 2 DDLEKKIIRQIEYYFGDFNLPRDKFLKEQIKED-DGWVPMEVMLKFNRLKSLSSDPEVIAKALKKSKSGLIEVSEDKTKI 80 (82)
T ss_pred hHHHHHHHHHHHhhcCHhhhccCHHHHHHHhcc-CCCEEhHHHhCChhHHHhcCCHHHHHHHHHhCCCCEEEEcCCCCcc
Confidence 578899999999999999999999999998765 999999999999999999999999999999999 99999999999
Q ss_pred cc
Q 015515 273 KR 274 (405)
Q Consensus 273 RR 274 (405)
||
T Consensus 81 RR 82 (82)
T cd08028 81 RR 82 (82)
T ss_pred CC
Confidence 98
No 9
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.91 E-value=1.7e-25 Score=183.53 Aligned_cols=77 Identities=42% Similarity=0.708 Sum_probs=73.6
Q ss_pred HHHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcC------------HHHHHHHhhcccccee
Q 015515 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISS------------HSHLASVLRKSSKLVV 265 (405)
Q Consensus 198 ~~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d------------~~~I~eAL~~S~~LeV 265 (405)
+++|++||||||||+||.+|+||+++|.++.||||+|++|++|+|||+|+.+ .+.|++||+.|..|+|
T Consensus 2 ~~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk~S~~lev 81 (90)
T cd08030 2 KEKVLRQVEFYFSDSNLPRDDFLLEEVEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALRTSTLLKV 81 (90)
T ss_pred hHHHHHHHHcccchhhcccCHHHHHHhccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHccCCEEEE
Confidence 5799999999999999999999999999999999999999999999999853 6899999999999999
Q ss_pred ecccccccc
Q 015515 266 SEDGKKIKR 274 (405)
Q Consensus 266 sedg~kVRR 274 (405)
++||++|||
T Consensus 82 seD~~~VRR 90 (90)
T cd08030 82 SEDGKRVGR 90 (90)
T ss_pred cCCCCccCC
Confidence 999999998
No 10
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.90 E-value=4.9e-25 Score=175.49 Aligned_cols=73 Identities=38% Similarity=0.636 Sum_probs=70.5
Q ss_pred HHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeeccccccc
Q 015515 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIK 273 (405)
Q Consensus 199 ~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsedg~kVR 273 (405)
++|++||||||||+||.+|.||+++| +.+|||+|++|++|+||++|+.|.+.|++||+.|..|+|++||++||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~m--~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VR 74 (75)
T cd08031 2 ELLKRQLEYYFSRENLANDAYLLSQM--DSDQYVPIWTIANFNKIKKLTTDIDLIVEALRESPNVQVDEKGEKVR 74 (75)
T ss_pred hHHHHHHHHHcCHhhhccCHHHHHHh--CCCCCEEHHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCccC
Confidence 68999999999999999999999985 67899999999999999999999999999999999999999999997
No 11
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.90 E-value=2e-24 Score=170.64 Aligned_cols=72 Identities=32% Similarity=0.556 Sum_probs=67.8
Q ss_pred HHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeecccccccc
Q 015515 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (405)
Q Consensus 199 ~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsedg~kVRR 274 (405)
++|++||||||||+||.+|.||+++| +.||||+|++|++|+||++|+.|.+.|++||+.|+.|||+++ +|||
T Consensus 2 ~~I~~QvEyYFSd~NL~~D~fLr~~m--d~dG~Vpi~~ia~F~rmk~Lt~d~~~I~~Al~~S~~vev~~~--~~r~ 73 (73)
T cd08037 2 DYIKRQIEYYFSVDNLERDFFLRRKM--DEDGFLPVTLIASFHRVQALTTDISLIIKALKDSKVVEIIDM--KIRR 73 (73)
T ss_pred hHHHHHHHHhccHhhhccCHHHHHHh--ccCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEecc--hhcC
Confidence 68999999999999999999999985 689999999999999999999999999999999999999987 5665
No 12
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.89 E-value=3.1e-24 Score=169.57 Aligned_cols=72 Identities=32% Similarity=0.588 Sum_probs=67.7
Q ss_pred HHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeecccccccc
Q 015515 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (405)
Q Consensus 199 ~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsedg~kVRR 274 (405)
++|++||||||||+||.+|.||+++| +.+|||+|++|++|+||++|+.|.+.|.+||+.|..|++++| +|||
T Consensus 2 e~I~~QvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~ia~F~rmk~lt~d~~~I~~Al~~S~~ve~~~~--~~r~ 73 (73)
T cd08038 2 EYIKRQIEYYFSTENLERDFFLRRKM--DLQGFLPISLIAGFYRVQALTTNVDLILEALKDSTEVEIVDQ--KIRR 73 (73)
T ss_pred hHHHhhHHhhcchhhhccCHHHHHHh--CCCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEeCC--cccC
Confidence 68999999999999999999999985 679999999999999999999999999999999999999987 4554
No 13
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.89 E-value=5.8e-24 Score=168.42 Aligned_cols=72 Identities=33% Similarity=0.608 Sum_probs=67.9
Q ss_pred HHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeecccccccc
Q 015515 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (405)
Q Consensus 199 ~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsedg~kVRR 274 (405)
++|++||||||||+||.+|.||+++| +.+|||+|++|++|+||++|+.|.+.|.+||+.|..|+|+++ +|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~lev~e~--kvR~ 73 (73)
T cd08034 2 EYIKKQIEYYFSVDNLEKDFFLRRKM--DPEGYLPIALIASFHRVQALTTDVNLILEALKDSTVVELVDE--KVRC 73 (73)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHc--CCCCCEeHHHHhccHHHHHHcCCHHHHHHHHHcCCeEEEecC--eecC
Confidence 68999999999999999999999985 689999999999999999999999999999999999999984 6765
No 14
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.88 E-value=9.9e-24 Score=168.39 Aligned_cols=74 Identities=43% Similarity=0.723 Sum_probs=71.8
Q ss_pred HHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeecccccccc
Q 015515 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (405)
Q Consensus 199 ~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsedg~kVRR 274 (405)
++|++||||||||+||.+|.||+++| +.+|||+|++|++|+||++++.|.+.|++||+.|..|+|++++.+|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~--~~~g~Vpl~~i~~F~r~k~l~~~~~~i~~Al~~s~~lel~~~~~~Vrr 75 (75)
T cd07323 2 EKIKKQVEYYFSDENLCKDRFLRSLM--DDDGWVPLSLLASFNRVKKLTTDVELILEALRDSSVVEVSEDGTKVRR 75 (75)
T ss_pred hHHHhhhHhccCHhhhCcCHHHHHhc--CCCCCEEHHHHhCchHHHHHcCCHHHHHHHHHhCCeEEEeCCCCccCC
Confidence 58999999999999999999999997 889999999999999999999999999999999999999999999987
No 15
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=99.88 E-value=9.5e-23 Score=209.07 Aligned_cols=165 Identities=27% Similarity=0.388 Sum_probs=139.4
Q ss_pred CCCCCChHHHHHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeecc
Q 015515 189 QHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSED 268 (405)
Q Consensus 189 ~~~~~~~e~~~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsed 268 (405)
-...++.|+++-|++|||||||-+||..|.||+.+ ||.|.||||.+++.|..|++|+.|+++|.++|+.|..|+|+++
T Consensus 88 ~~~Pls~~~kq~lk~qlEy~fSreNlssD~YL~sQ--MDSDqyVPI~tva~~~~i~klttDvdLI~Evlresp~VqvDek 165 (684)
T KOG2591|consen 88 PSPPLSRDLKQLLKKQLEYYFSRENLSSDRYLISQ--MDSDQYVPINTVANFPEIMKLTTDVDLIVEVLRESPNVQVDEK 165 (684)
T ss_pred CCCccchhHHHHHHHHHHHhhccccccchhhhhhh--cccccccchhhhccchhhhhhccchHHHHHHHhcCCCceeccC
Confidence 34456779999999999999999999999999998 7899999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcchhhhhhcceeEEeeCCCccccHHHHHHHHhh--cCCeeEEEEecCCCCCCCCCCCCCcccccCcccCC
Q 015515 269 GKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSA--VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSN 346 (405)
Q Consensus 269 g~kVRR~~Pl~e~~~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~--fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~ 346 (405)
|.+||-.. .+++|+++.||+++-+|+++.||+. |-++.++.+ +.
T Consensus 166 gekVrp~~----------kRcIvilREIpettp~e~Vk~lf~~encPk~iscef------------------------a~ 211 (684)
T KOG2591|consen 166 GEKVRPNH----------KRCIVILREIPETTPIEVVKALFKGENCPKVISCEF------------------------AH 211 (684)
T ss_pred ccccccCc----------ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeee------------------------ee
Confidence 99999764 4678899999999999999999986 555555544 44
Q ss_pred ccEEEEEeCCHHHHHHHHHHHcCCCCCCCc--e--EEEEcccCCCCC
Q 015515 347 KLHAFVEYESVELAEKAIAELNDEGNWRSG--L--RVRLMLRRGSKP 389 (405)
Q Consensus 347 KG~aFVEFes~E~A~kAv~~ln~~~~~~~g--l--kV~ll~~~~~K~ 389 (405)
...|||+|++.+||++|++.|.++.....| | |++.+++...|+
T Consensus 212 N~nWyITfesd~DAQqAykylreevk~fqgKpImARIKaintf~pkn 258 (684)
T KOG2591|consen 212 NDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARIKAINTFFPKN 258 (684)
T ss_pred cCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhhhhhhcccCCC
Confidence 567999999999999999999876544333 3 333455555664
No 16
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=99.86 E-value=5.9e-22 Score=179.13 Aligned_cols=154 Identities=27% Similarity=0.344 Sum_probs=130.6
Q ss_pred ChHHHHHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccc--cceeeccccc
Q 015515 194 NDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS--KLVVSEDGKK 271 (405)
Q Consensus 194 ~~e~~~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~--~LeVsedg~k 271 (405)
..++.++|+.||||||+|.||++|+||+++|.+..+|||+|.++..|+|+..|++|...|++||+.|. ++++++|.++
T Consensus 10 ~a~lE~kii~qleyy~Gd~nl~rdkfl~eqi~k~~~gwvpi~i~i~FnRla~lttD~~~Iv~al~ksk~~l~eisedk~k 89 (205)
T KOG4213|consen 10 MAALEAKIIHQLEYYFGDLNLPRDKFLREQIHKLDDGWVPIEIMIKFNRLASLTTDFNVIVEALSKSKAELMEISEDKTK 89 (205)
T ss_pred hhHHHHhhhhhhhhhhcccCchHHHHHHHHhhhhccCCccchhhhhhhhhhhccccHHHHHHHHhhCHHhhhhhhhchhh
Confidence 56778899999999999999999999999998899999999999999999999999999999999875 7899999999
Q ss_pred cccCC--CCcch---hhhhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCC
Q 015515 272 IKRQN--PLTES---DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSN 346 (405)
Q Consensus 272 VRR~~--Pl~e~---~~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~ 346 (405)
+||.. |+++. ....+..|+||.+ +.+...++|..+-+ |.+.+|.+++-.. +...+
T Consensus 90 ~rr~~skplpEvt~e~~~~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~----------------k~~~f 149 (205)
T KOG4213|consen 90 IRRSPSKPLPEVTDEYKEGIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGN----------------KAHPF 149 (205)
T ss_pred hhcCcCCCCccccHHHHHHHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCC----------------CCCCC
Confidence 99974 66653 4566778999988 66777777877766 8999998864321 11234
Q ss_pred ccEEEEEeCCHHHHHHHHHHH
Q 015515 347 KLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 347 KG~aFVEFes~E~A~kAv~~l 367 (405)
+|..||+|.+.+.|..+++.-
T Consensus 150 kGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 150 KGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred CCceEEEeecHHHHHhhhhhh
Confidence 899999999999998877653
No 17
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=99.82 E-value=1.7e-21 Score=149.62 Aligned_cols=60 Identities=40% Similarity=0.678 Sum_probs=55.1
Q ss_pred HhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhh-cCHHHHHHHhhcc
Q 015515 201 VLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAII-SSHSHLASVLRKS 260 (405)
Q Consensus 201 I~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt-~d~~~I~eAL~~S 260 (405)
|++||||||||+||.+|+||+++|.+++||||+|++|++|+|||+++ .|.+.|.+||++|
T Consensus 1 I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpi~~i~~F~r~k~l~~~~~~~I~~al~~S 61 (61)
T PF05383_consen 1 IKKQVEFYFSDENLPRDKFLRSQMDSNPDGWVPISTILSFNRMKALTNTDIELIVDALRDS 61 (61)
T ss_dssp HHHHHHHHTSHHHHCC-HHHHHHHCTTTTTBEEHHHHTTSHHHHHH--S-HHHHHHHHHTS
T ss_pred ChhHHHHhcCHHHhCcCHHHHHHHHhcCCCcEeHHHHHchHHHHHHhcCCHHHHHHHHHcC
Confidence 68999999999999999999999999899999999999999999999 8999999999976
No 18
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.66 E-value=6.5e-16 Score=137.84 Aligned_cols=85 Identities=20% Similarity=0.232 Sum_probs=74.7
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+||+.++|+++|+++|++||.|+.|+|..++.+++ .||||||+|++.|+|++|++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGR-----------------SRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCC-----------------cceEEEEEECCHHHHHHHHHH
Confidence 456899999999999999999999999999999987765433 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~K 388 (405)
|++..+.++.|+|.+...+...
T Consensus 96 lng~~i~Gr~l~V~~a~~~~~~ 117 (144)
T PLN03134 96 MDGKELNGRHIRVNPANDRPSA 117 (144)
T ss_pred cCCCEECCEEEEEEeCCcCCCC
Confidence 9999888888999888765543
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.59 E-value=1.8e-14 Score=145.53 Aligned_cols=116 Identities=22% Similarity=0.261 Sum_probs=84.0
Q ss_pred CHHHHHHHhhccccceeeccccccccCCCCcchhhhhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCC
Q 015515 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (405)
Q Consensus 249 d~~~I~eAL~~S~~LeVsedg~kVRR~~Pl~e~~~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~ 328 (405)
|.+.+.+||+..+-.++.....+|....+- .+....++|||+|||.++|+++|+++|++||.|+.|+|.+++.+++
T Consensus 158 ~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~----~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~ 233 (346)
T TIGR01659 158 SEADSQRAIKNLNGITVRNKRLKVSYARPG----GESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGT 233 (346)
T ss_pred cHHHHHHHHHHcCCCccCCceeeeeccccc----ccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCc
Confidence 445556666554444444333333322221 1223467899999999999999999999999999999987764432
Q ss_pred CCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCC--CceEEEEcccC
Q 015515 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWR--SGLRVRLMLRR 385 (405)
Q Consensus 329 ~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~--~glkV~ll~~~ 385 (405)
.||||||+|++.++|++||+.||+..+.+ ..|+|+++..+
T Consensus 234 -----------------~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 234 -----------------PRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred -----------------cceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 28999999999999999999999987655 35777776643
No 20
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.6e-14 Score=125.26 Aligned_cols=100 Identities=22% Similarity=0.182 Sum_probs=84.4
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
..++||||+||...+++|.|-++|++||.|..|-|-.++.+ | ...|||||||-+.++|+.|++
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~k-----------k------tpCGFCFVeyy~~~dA~~Alr 96 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFK-----------K------TPCGFCFVEYYSRDDAEDALR 96 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCC-----------c------CccceEEEEEecchhHHHHHH
Confidence 46789999999999999999999999999999999776542 1 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCCCCCCCCCCCCCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSKPAQVKGKKGPEGEY 402 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K~~~grg~~Gg~~~~ 402 (405)
.+|+..+..+-|++.+-.......--|||+.||...|
T Consensus 97 yisgtrLddr~ir~D~D~GF~eGRQyGRG~sGGqVrd 133 (153)
T KOG0121|consen 97 YISGTRLDDRPIRIDWDAGFVEGRQYGRGKSGGQVRD 133 (153)
T ss_pred HhccCcccccceeeeccccchhhhhhcCCCCCCeech
Confidence 9999999888888887655444433499999998754
No 21
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.50 E-value=6.8e-14 Score=139.53 Aligned_cols=82 Identities=22% Similarity=0.210 Sum_probs=74.2
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln 368 (405)
++|||+|||.++++++|+++|++||.|++|+|+++..++. .||||||+|++.++|.+|++.||
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~-----------------skG~aFV~F~~~~~A~~Ai~~ln 332 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQ-----------------CKGYGFVSMTNYDEAAMAILSLN 332 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCC-----------------ccceEEEEECCHHHHHHHHHHhC
Confidence 4699999999999999999999999999999998865443 28999999999999999999999
Q ss_pred CCCCCCCceEEEEcccCCC
Q 015515 369 DEGNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 369 ~~~~~~~glkV~ll~~~~~ 387 (405)
+..++++.|+|.+...+..
T Consensus 333 G~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 333 GYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CCEECCeEEEEEEccCCCC
Confidence 9999999999998876543
No 22
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=8.7e-15 Score=146.51 Aligned_cols=160 Identities=27% Similarity=0.329 Sum_probs=131.3
Q ss_pred CCCCCChHHHHH---------------Hhhccccccc-----CCCCCCCHHHHhhhcC--CCCCceecccccchhhhHhh
Q 015515 189 QHGGLNDESIQK---------------VLNQVEYYFS-----DLNLATTDHLIRFILK--DPEGYVPISTVASFKKIKAI 246 (405)
Q Consensus 189 ~~~~~~~e~~~k---------------I~kQvEfYFS-----D~NL~~D~fL~~~i~k--~~eG~Vpi~~i~sFkRmk~L 246 (405)
.+++++++.+.+ +..|+||||| |.|+.+|+||+..-.+ ..+|||+|.++++|+||+.+
T Consensus 48 ~~eE~~~~sksKk~d~~ps~l~~~~kw~l~qvE~~fS~s~~~d~n~~~dk~~ktta~Kn~~~~kwVpIkt~~tfn~~k~~ 127 (438)
T COG5193 48 PVEELTESSKSKKEDKNPSKLTSNTKWTLKQVEFYFSGSKDTDSNFPKDKFLKTTAPKNKKRDKWVPIKTIATFNRMKNS 127 (438)
T ss_pred chhhccchhhhcccccCccccccCccccccceeEEeeccccccccccchhhhccccccccCCCCceeeeeeeeecccccc
Confidence 455667777777 9999999999 9999999999986433 25899999999999999999
Q ss_pred hcCHHHHHHHhhcc---ccceeeccccccccCCCCcchhhh--hhcceeEEeeCCCccccH--------HHHHHHHhh--
Q 015515 247 ISSHSHLASVLRKS---SKLVVSEDGKKIKRQNPLTESDLE--ELQSRIVVAENLPEDHCH--------QNLMKIFSA-- 311 (405)
Q Consensus 247 t~d~~~I~eAL~~S---~~LeVsedg~kVRR~~Pl~e~~~~--~~~~rtVyV~nLP~d~t~--------e~L~~~Fs~-- 311 (405)
+..++.+..|++.| .+++++.+|.+++|..++.....+ ....|.+|+.+|....+. ++++..|..
T Consensus 128 gs~~~~v~~a~rks~~~rv~e~Sssgsn~~r~~k~~s~n~~s~~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~ 207 (438)
T COG5193 128 GSPVSAVSGALRKSLDARVLEVSSSGSNKNRTEKLISNNNKSTSQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHY 207 (438)
T ss_pred CCchhhhhhhhhcCcccceeeeccccccccccchhhhhhhhhhhhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcc
Confidence 99999999999999 789999999999998766543322 455689999999876544 489999998
Q ss_pred cCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 312 VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 312 fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
.+.+..|+++++- +. +. ++|..|++|...+.|+++..
T Consensus 208 h~~~~~i~~rrd~----------~n-----kn--~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 208 HAPPSQIRNRRDW----------LN-----KN--FRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred cCChhhccchhhh----------hh-----cc--ccCcccccccChHHHHHHhc
Confidence 6888999987653 11 11 37889999999999998873
No 23
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.46 E-value=1.5e-13 Score=104.75 Aligned_cols=70 Identities=39% Similarity=0.499 Sum_probs=60.3
Q ss_pred EEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCC
Q 015515 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (405)
Q Consensus 291 VyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~ 370 (405)
|||+|||.++|+++|+++|+.||.|..+.+..+. ++ ..+++|||+|++.++|++|++.|++.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~-~~-----------------~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNS-SG-----------------KSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEET-TS-----------------SEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccc-cc-----------------cccceEEEEEcCHHHHHHHHHHcCCC
Confidence 7999999999999999999999999999997641 11 13899999999999999999999998
Q ss_pred CCCCCceE
Q 015515 371 GNWRSGLR 378 (405)
Q Consensus 371 ~~~~~glk 378 (405)
.++++.||
T Consensus 63 ~~~~~~ir 70 (70)
T PF00076_consen 63 KINGRKIR 70 (70)
T ss_dssp EETTEEEE
T ss_pred EECccCcC
Confidence 87665553
No 24
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.44 E-value=3e-13 Score=134.92 Aligned_cols=79 Identities=20% Similarity=0.330 Sum_probs=71.1
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
..+|||+|||.++|+++|+++|+.||+|..|+|++++.+++ .+|||||+|++.++|++||+.|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~-----------------s~g~afV~f~~~~~A~~Ai~~l 65 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQ-----------------SLGYGFVNYVRPEDAEKAVNSL 65 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCc-----------------cceEEEEEECcHHHHHHHHhhc
Confidence 46999999999999999999999999999999998765432 2899999999999999999999
Q ss_pred cCCCCCCCceEEEEcc
Q 015515 368 NDEGNWRSGLRVRLML 383 (405)
Q Consensus 368 n~~~~~~~glkV~ll~ 383 (405)
|+..+.++.|+|.+..
T Consensus 66 ~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 66 NGLRLQNKTIKVSYAR 81 (352)
T ss_pred ccEEECCeeEEEEeec
Confidence 9999888888887664
No 25
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.43 E-value=8.9e-13 Score=141.13 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=88.3
Q ss_pred CHHHHHHHhhccccceeeccccccccCCCCcc------hh-hhhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEe
Q 015515 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTE------SD-LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (405)
Q Consensus 249 d~~~I~eAL~~S~~LeVsedg~kVRR~~Pl~e------~~-~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~ 321 (405)
+.+....|++..+...+.....+|+|....+. .. .+....++|||+||+.++++++|+++|+.||.|++|+|.
T Consensus 158 s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~ 237 (612)
T TIGR01645 158 VPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLA 237 (612)
T ss_pred cHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEE
Confidence 34555666665554555544444544322211 00 111234699999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEcccC
Q 015515 322 LPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 322 ~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~glkV~ll~~~ 385 (405)
++..+++ .||||||+|++.++|.+|++.||+..++++.|+|....+.
T Consensus 238 ~D~~tgk-----------------sKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 238 RAPTGRG-----------------HKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred ecCCCCC-----------------cCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 7754322 3899999999999999999999999998888999876654
No 26
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.43 E-value=3.7e-13 Score=136.10 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=71.8
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||+++|+++|+++|+.||.|+.|+|+++..+++ .||||||+|+++++|++|+++
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~-----------------srGyaFVeF~~~e~A~~Ai~~ 168 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGY-----------------SFGYAFVDFGSEADSQRAIKN 168 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCc-----------------cCcEEEEEEccHHHHHHHHHH
Confidence 568999999999999999999999999999999988765433 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEcc
Q 015515 367 LNDEGNWRSGLRVRLML 383 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~ 383 (405)
|++..+.++.|+|.+..
T Consensus 169 LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 169 LNGITVRNKRLKVSYAR 185 (346)
T ss_pred cCCCccCCceeeeeccc
Confidence 99999988888887654
No 27
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=6.6e-13 Score=120.59 Aligned_cols=79 Identities=27% Similarity=0.304 Sum_probs=71.0
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
.+.|||+||+.++++.+|+.+|+.||.|..|.|.+. .-|||||||++..+|++|+..|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----------------------PPGfAFVEFed~RDA~DAvr~L 67 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----------------------PPGFAFVEFEDPRDAEDAVRYL 67 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----------------------CCCceEEeccCcccHHHHHhhc
Confidence 578999999999999999999999999999999642 1689999999999999999999
Q ss_pred cCCCCCCCceEEEEcccCCCC
Q 015515 368 NDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 368 n~~~~~~~glkV~ll~~~~~K 388 (405)
++..+++..|+|.+...+...
T Consensus 68 DG~~~cG~r~rVE~S~G~~r~ 88 (195)
T KOG0107|consen 68 DGKDICGSRIRVELSTGRPRG 88 (195)
T ss_pred CCccccCceEEEEeecCCccc
Confidence 999999988999988765543
No 28
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.36 E-value=2.6e-12 Score=124.24 Aligned_cols=77 Identities=17% Similarity=0.213 Sum_probs=68.8
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+||++++|+++|+++|+.||.|++|+|.+++. .+|||||+|++.++|+.|+.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--------------------~~GfAFVtF~d~eaAe~All- 61 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--------------------RSQIAYVTFKDPQGAETALL- 61 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--------------------CCCEEEEEeCcHHHHHHHHH-
Confidence 357999999999999999999999999999999976541 16899999999999999995
Q ss_pred HcCCCCCCCceEEEEccc
Q 015515 367 LNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~ 384 (405)
|++..++++.|+|.....
T Consensus 62 LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 62 LSGATIVDQSVTITPAED 79 (260)
T ss_pred hcCCeeCCceEEEEeccC
Confidence 999999999999988764
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.35 E-value=4.3e-12 Score=135.52 Aligned_cols=76 Identities=30% Similarity=0.335 Sum_probs=69.4
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhc--CCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAV--GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~f--G~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
.++|||+||+.++|+++|+++|+.| |.|+.|+++ ++||||+|++.|+|++|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------------------------rgfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------------------------RDYAFVHFEDREDAVKAMD 287 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------------------------cCeEEEEeCCHHHHHHHHH
Confidence 4789999999999999999999999 999999773 6799999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K 388 (405)
.||+..++++.|+|.+...+..+
T Consensus 288 ~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 288 ELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HhCCCEECCEEEEEEEccCCCcc
Confidence 99999999999999988766544
No 30
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=3e-12 Score=124.38 Aligned_cols=82 Identities=22% Similarity=0.233 Sum_probs=74.9
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
-+||||..|++++++..|++.|++||.|+.|+|++++.++++ ||||||||+++-+...|++..
T Consensus 101 y~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgks-----------------kGYAFIeye~erdm~~AYK~a 163 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKS-----------------KGYAFIEYEHERDMKAAYKDA 163 (335)
T ss_pred cceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCc-----------------cceEEEEeccHHHHHHHHHhc
Confidence 479999999999999999999999999999999999877653 999999999999999999999
Q ss_pred cCCCCCCCceEEEEcccCC
Q 015515 368 NDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 368 n~~~~~~~glkV~ll~~~~ 386 (405)
.+..+.++.|-|.+-+.+-
T Consensus 164 dG~~Idgrri~VDvERgRT 182 (335)
T KOG0113|consen 164 DGIKIDGRRILVDVERGRT 182 (335)
T ss_pred cCceecCcEEEEEeccccc
Confidence 9999888888888876653
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.32 E-value=9.8e-12 Score=132.45 Aligned_cols=82 Identities=23% Similarity=0.325 Sum_probs=72.4
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+||+.++|+++|+++|+.||.|..|+++++. ++. .||||||+|++.++|++|+.+
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~-~g~-----------------~~g~gfV~f~~~~~A~~A~~~ 345 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE-KGV-----------------SRGFGFVCFSNPEEANRAVTE 345 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC-CCC-----------------cCCeEEEEeCCHHHHHHHHHH
Confidence 45689999999999999999999999999999998763 111 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~ 386 (405)
|++..+.++.|+|.++..+.
T Consensus 346 ~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 346 MHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred hcCCeeCCceeEEEeccCcH
Confidence 99999989999999887643
No 32
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=4.3e-12 Score=120.44 Aligned_cols=80 Identities=31% Similarity=0.363 Sum_probs=71.4
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
+..||-|.||++++++++|+++|..||.|.+|.+.+++.+|.. ||||||.|+++|+|.+||+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~-----------------kGFAFVtF~sRddA~rAI~~ 250 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLS-----------------KGFAFVTFESRDDAARAIAD 250 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcc-----------------cceEEEEEecHHHHHHHHHH
Confidence 5678999999999999999999999999999999999887653 99999999999999999999
Q ss_pred HcCCCCCCCceEEEEcc
Q 015515 367 LNDEGNWRSGLRVRLML 383 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~ 383 (405)
||+..+..-.|+|....
T Consensus 251 LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 251 LNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccCcccceEEEEEEecC
Confidence 99987655567777654
No 33
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.31 E-value=5.1e-12 Score=97.50 Aligned_cols=68 Identities=31% Similarity=0.409 Sum_probs=56.2
Q ss_pred EEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCC
Q 015515 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (405)
Q Consensus 291 VyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~ 370 (405)
|||+|||.++++++|+++|+.||.|..|++.+.+. + ..+|+|||+|.+.++|++|++.+++.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~-----------------~~~~~a~v~f~~~~~a~~al~~~~~~ 62 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-G-----------------QSRGFAFVEFSSEEDAKRALELLNGK 62 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-S-----------------SEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-c-----------------ccCCEEEEEeCCHHHHHHHHHHCCCc
Confidence 79999999999999999999999999999986532 1 13899999999999999999998866
Q ss_pred CCCCCc
Q 015515 371 GNWRSG 376 (405)
Q Consensus 371 ~~~~~g 376 (405)
.+.++.
T Consensus 63 ~~~g~~ 68 (70)
T PF14259_consen 63 EIDGRK 68 (70)
T ss_dssp EETTEE
T ss_pred EECCEE
Confidence 654443
No 34
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.30 E-value=7.4e-12 Score=133.38 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=68.6
Q ss_pred eEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 015515 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~ 369 (405)
+|||+|||.++|+++|+++|++||.|.+|+|++++.+++ .+|||||+|.+.++|++|++.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~-----------------s~G~afV~F~~~~~A~~Al~~ln~ 64 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRR-----------------SLGYGYVNFQNPADAERALETMNF 64 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCC-----------------cceEEEEEECCHHHHHHHHHHhCC
Confidence 799999999999999999999999999999998865432 289999999999999999999999
Q ss_pred CCCCCCceEEEEcc
Q 015515 370 EGNWRSGLRVRLML 383 (405)
Q Consensus 370 ~~~~~~glkV~ll~ 383 (405)
..++++.|+|.+..
T Consensus 65 ~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 65 KRLGGKPIRIMWSQ 78 (562)
T ss_pred CEECCeeEEeeccc
Confidence 88888777776543
No 35
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.30 E-value=1.7e-11 Score=128.45 Aligned_cols=80 Identities=23% Similarity=0.271 Sum_probs=71.3
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
.++|||+|||.++|+++|+++|+.||.|..+.|+++..++. ++|||||+|++.++|.+|++.|
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~-----------------~~g~afv~f~~~~~a~~A~~~l 357 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGL-----------------SKGYAFCEYKDPSVTDVAIAAL 357 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCC-----------------cCeEEEEEECCHHHHHHHHHHc
Confidence 46899999999999999999999999999999987654332 3899999999999999999999
Q ss_pred cCCCCCCCceEEEEccc
Q 015515 368 NDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 368 n~~~~~~~glkV~ll~~ 384 (405)
++..+++..|+|.++..
T Consensus 358 ~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 358 NGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCCEECCeEEEEEECcc
Confidence 99999988899988753
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.28 E-value=9.7e-12 Score=128.70 Aligned_cols=79 Identities=19% Similarity=0.242 Sum_probs=71.0
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
.++|||+||+.++|+++|+++|+.||.|..|++.++..++. .+|||||+|.+.++|++|++.|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~-----------------~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGR-----------------SKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCc-----------------cceEEEEEECCHHHHHHHHHhc
Confidence 57999999999999999999999999999999987654322 2899999999999999999999
Q ss_pred cCCCCCCCceEEEEcc
Q 015515 368 NDEGNWRSGLRVRLML 383 (405)
Q Consensus 368 n~~~~~~~glkV~ll~ 383 (405)
++..+.++.|+|.++.
T Consensus 249 ~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 249 NGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCcEECCEEEEEEEcc
Confidence 9998888889999854
No 37
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.26 E-value=9.7e-12 Score=133.26 Aligned_cols=79 Identities=23% Similarity=0.282 Sum_probs=70.7
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+||++++++++|+++|+.||.|.+|+|.+++.+++ +||||||+|++.++|++|++.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~Tgk-----------------skGfAFVeF~s~e~A~~Ai~~ 168 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGK-----------------HKGFAFVEYEVPEAAQLALEQ 168 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCC-----------------cCCeEEEEeCcHHHHHHHHHh
Confidence 357899999999999999999999999999999988765433 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEc
Q 015515 367 LNDEGNWRSGLRVRLM 382 (405)
Q Consensus 367 ln~~~~~~~glkV~ll 382 (405)
||+..++++.|+|...
T Consensus 169 lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 169 MNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCeEEecceeeeccc
Confidence 9999998888888743
No 38
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.6e-11 Score=112.62 Aligned_cols=79 Identities=28% Similarity=0.297 Sum_probs=68.3
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
.+++|||+|||.++-+.+|+++|.+||.|..|.+.- |.+ .-.||||||++..+|+.||..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~------------r~g--------~ppfafVeFEd~RDAeDAiyg 64 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN------------RPG--------PPPFAFVEFEDPRDAEDAIYG 64 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEecc------------CCC--------CCCeeEEEecCccchhhhhhc
Confidence 568999999999999999999999999999998831 211 257999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccC
Q 015515 367 LNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~ 385 (405)
-++..+.+-.|+|.+....
T Consensus 65 RdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 65 RDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccccccCcceEEEEeccCC
Confidence 9998888888999987754
No 39
>smart00362 RRM_2 RNA recognition motif.
Probab=99.24 E-value=3.8e-11 Score=89.84 Aligned_cols=71 Identities=38% Similarity=0.496 Sum_probs=59.9
Q ss_pred eEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 015515 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~ 369 (405)
+|||+|||.+++.++|+++|+.||.|..+++.+.. + ..+|+|||+|.+.++|++|++.+++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~-----------------~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--G-----------------KSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--C-----------------CCCceEEEEeCCHHHHHHHHHHhCC
Confidence 58999999999999999999999999999987542 1 1378999999999999999999998
Q ss_pred CCCCCCceEE
Q 015515 370 EGNWRSGLRV 379 (405)
Q Consensus 370 ~~~~~~glkV 379 (405)
..+.+..|+|
T Consensus 62 ~~~~~~~i~v 71 (72)
T smart00362 62 TKLGGRPLRV 71 (72)
T ss_pred cEECCEEEee
Confidence 7665544444
No 40
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=3.6e-11 Score=101.05 Aligned_cols=77 Identities=26% Similarity=0.297 Sum_probs=65.7
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
-.|.|||+|||+++|.|++-++|.+||.|..|||--.+ ..+|.|||.|++..+|.+|++.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--------------------~TrGTAFVVYedi~dAk~A~dh 76 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--------------------ETRGTAFVVYEDIFDAKKACDH 76 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--------------------CcCceEEEEehHhhhHHHHHHH
Confidence 46899999999999999999999999999999993221 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEcc
Q 015515 367 LNDEGNWRSGLRVRLML 383 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~ 383 (405)
|++.....+-|.|-+..
T Consensus 77 lsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 77 LSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hcccccCCceEEEEecC
Confidence 99988777666665543
No 41
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.24 E-value=2.7e-11 Score=125.35 Aligned_cols=81 Identities=27% Similarity=0.288 Sum_probs=70.2
Q ss_pred hhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
+...++|||+|||.++++++|+++|++||.|..|+|++++.+++ .||||||+|.+.++|++||
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~-----------------skg~afVeF~~~e~A~~Al 148 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRR-----------------SKGVAYVEFYDVESVIKAL 148 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC-----------------cceEEEEEECCHHHHHHHH
Confidence 45678999999999999999999999999999999998765432 2899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEcc
Q 015515 365 AELNDEGNWRSGLRVRLML 383 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~ 383 (405)
. |++..+.++.|.|....
T Consensus 149 ~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 149 A-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred H-hCCCEECCeeeEEeecc
Confidence 6 88888877777777644
No 42
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=1.6e-11 Score=116.13 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=65.0
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
.-..|||+||++++..|+|+++|++||+|+.+.|+.|+.++++ |||+||+|.+.|+|.+|++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rs-----------------kGyGfVTf~d~~aa~rAc~d 73 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRS-----------------KGYGFVTFRDAEAATRACKD 73 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccc-----------------cceeeEEeecHHHHHHHhcC
Confidence 3458999999999999999999999999999999999887754 99999999999999999998
Q ss_pred HcCCCCCCCceEEEE
Q 015515 367 LNDEGNWRSGLRVRL 381 (405)
Q Consensus 367 ln~~~~~~~glkV~l 381 (405)
.|-...+ +.-.|.|
T Consensus 74 p~piIdG-R~aNcnl 87 (247)
T KOG0149|consen 74 PNPIIDG-RKANCNL 87 (247)
T ss_pred CCCcccc-cccccch
Confidence 7765443 3333443
No 43
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=3e-11 Score=105.87 Aligned_cols=86 Identities=24% Similarity=0.370 Sum_probs=75.0
Q ss_pred hhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
.+...+|||.++.+++|+++|.+.|..||+|++|.+-.|+.+|- -||||+|||++.++|++|+
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy-----------------~KGYaLvEYet~keAq~A~ 131 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGY-----------------VKGYALVEYETLKEAQAAI 131 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeecccccccc-----------------ccceeeeehHhHHHHHHHH
Confidence 34567999999999999999999999999999999977764332 2899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEcccCCC
Q 015515 365 AELNDEGNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~~~~~ 387 (405)
..||+..+.+..|.|.+..-+..
T Consensus 132 ~~~Ng~~ll~q~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 132 DALNGAELLGQNVSVDWCFVKGP 154 (170)
T ss_pred HhccchhhhCCceeEEEEEecCC
Confidence 99999999999999987665544
No 44
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.21 E-value=5.6e-11 Score=127.02 Aligned_cols=68 Identities=26% Similarity=0.376 Sum_probs=60.9
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++++++|+++|++||.|..|+|++| .+++ ++|||||+|.+.|+|++||+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~-----------------sRGfaFV~F~~~e~A~~Ai~~ 118 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQ-----------------NRGYAFVTFCGKEEAKEAVKL 118 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCC-----------------ccceEEEEeCCHHHHHHHHHH
Confidence 4589999999999999999999999999999999887 3322 389999999999999999999
Q ss_pred HcCCCC
Q 015515 367 LNDEGN 372 (405)
Q Consensus 367 ln~~~~ 372 (405)
||+..+
T Consensus 119 lng~~i 124 (578)
T TIGR01648 119 LNNYEI 124 (578)
T ss_pred cCCCee
Confidence 998665
No 45
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.19 E-value=6.6e-11 Score=113.12 Aligned_cols=77 Identities=13% Similarity=0.164 Sum_probs=67.5
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
...||||+||+.++|+++|+++|+.||+|..|+|++++. .++||||+|+++++|+.|+ .
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e--------------------t~gfAfVtF~d~~aaetAl-l 62 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE--------------------YACTAYVTFKDAYALETAV-L 62 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC--------------------cceEEEEEECCHHHHHHHH-h
Confidence 357999999999999999999999999999999987642 1579999999999999998 5
Q ss_pred HcCCCCCCCceEEEEccc
Q 015515 367 LNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~ 384 (405)
|++..+.+..|.|.....
T Consensus 63 LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 63 LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred cCCCeeCCceEEEEeCcc
Confidence 899999888888877554
No 46
>smart00360 RRM RNA recognition motif.
Probab=99.19 E-value=9.2e-11 Score=87.31 Aligned_cols=70 Identities=37% Similarity=0.509 Sum_probs=58.4
Q ss_pred eeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCC
Q 015515 293 AENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGN 372 (405)
Q Consensus 293 V~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~ 372 (405)
|+|||.+++.++|+++|+.||.|..+.+..++.++ ..+|+|||+|.+.++|.+|++.|++..+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~-----------------~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTG-----------------KSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCC-----------------CCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 57999999999999999999999999997653211 1378999999999999999999997776
Q ss_pred CCCceEE
Q 015515 373 WRSGLRV 379 (405)
Q Consensus 373 ~~~glkV 379 (405)
.+..|+|
T Consensus 64 ~~~~~~v 70 (71)
T smart00360 64 DGRPLKV 70 (71)
T ss_pred CCcEEEe
Confidence 6655554
No 47
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=1.1e-10 Score=118.74 Aligned_cols=84 Identities=27% Similarity=0.326 Sum_probs=70.0
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...+.|||+.||.|+.+++|.-+|++.|+|-.+||+.|..+|. +||||||+|.+.|+|++||+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~-----------------nRGYAFVtf~~Ke~Aq~Aik 143 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGD-----------------NRGYAFVTFCTKEEAQEAIK 143 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCC-----------------CcceEEEEeecHHHHHHHHH
Confidence 4568999999999999999999999999999999999876553 49999999999999999999
Q ss_pred HHcCCCCCC-CceE--EEEcccCC
Q 015515 366 ELNDEGNWR-SGLR--VRLMLRRG 386 (405)
Q Consensus 366 ~ln~~~~~~-~glk--V~ll~~~~ 386 (405)
+||+.++.. +-|+ |.+.++|.
T Consensus 144 ~lnn~Eir~GK~igvc~Svan~RL 167 (506)
T KOG0117|consen 144 ELNNYEIRPGKLLGVCVSVANCRL 167 (506)
T ss_pred HhhCccccCCCEeEEEEeeeccee
Confidence 999986642 2344 44444443
No 48
>PLN03213 repressor of silencing 3; Provisional
Probab=99.18 E-value=6e-11 Score=121.67 Aligned_cols=77 Identities=18% Similarity=0.218 Sum_probs=68.2
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCH--HHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV--ELAEKA 363 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~--E~A~kA 363 (405)
....+|||+||.+++++++|+.+|+.||.|.+|.|+|.. +||||||+|.+. +++.+|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET---------------------GRGFAFVEMssdddaEeeKA 66 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK---------------------GRSFAYIDFSPSSTNSLTKL 66 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc---------------------CCceEEEEecCCcHHHHHHH
Confidence 345689999999999999999999999999999997321 189999999987 789999
Q ss_pred HHHHcCCCCCCCceEEEEcc
Q 015515 364 IAELNDEGNWRSGLRVRLML 383 (405)
Q Consensus 364 v~~ln~~~~~~~glkV~ll~ 383 (405)
|..||+..+.|+.|+|..+.
T Consensus 67 ISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 67 FSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred HHHhcCCeecCceeEEeecc
Confidence 99999999889999998765
No 49
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.17 E-value=8.9e-11 Score=108.33 Aligned_cols=79 Identities=37% Similarity=0.474 Sum_probs=70.8
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
.++|||+||+.++|+++|.++|+.||.|..|++..++.+++ .+|||||+|.+.++|.+|++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~-----------------~~g~~~v~f~~~~~~~~a~~~~ 177 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGK-----------------SRGFAFVEFESEESAEKAIEEL 177 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCc-----------------cCceEEEEecCHHHHHHHHHHc
Confidence 58999999999999999999999999999999987753322 3899999999999999999999
Q ss_pred cCCCCCCCceEEEEcc
Q 015515 368 NDEGNWRSGLRVRLML 383 (405)
Q Consensus 368 n~~~~~~~glkV~ll~ 383 (405)
++..+.++.|+|....
T Consensus 178 ~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 178 NGKELEGRPLRVQKAQ 193 (306)
T ss_pred CCCeECCceeEeeccc
Confidence 9998888889998854
No 50
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=3.8e-11 Score=121.46 Aligned_cols=161 Identities=16% Similarity=0.202 Sum_probs=103.7
Q ss_pred ChHHHHHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeeccccccc
Q 015515 194 NDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIK 273 (405)
Q Consensus 194 ~~e~~~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsedg~kVR 273 (405)
+++.+..++.+---- -..||.||+.-.. ..++=||.. ...| +.+++..||.+-..|.=-.--.+||
T Consensus 47 sE~dlr~lFe~yg~V-~einl~kDk~t~~---s~gcCFv~~------~trk----~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 47 SEKDLRELFEKYGNV-YEINLIKDKSTGQ---SKGCCFVKY------YTRK----EADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred cHHHHHHHHHHhCce-eEEEeecccccCc---ccceEEEEe------ccHH----HHHHHHHHhhcccccCCCCcceeec
Confidence 344444444442221 2458898876553 234445533 3222 3445566666544332000011222
Q ss_pred cCCCCcchhh-hhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEE
Q 015515 274 RQNPLTESDL-EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFV 352 (405)
Q Consensus 274 R~~Pl~e~~~-~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFV 352 (405)
-.+ ..+ +-.+.+.|||+-|+..+|+++++++|++||.|++|+|+|+... ..||||||
T Consensus 113 ~Ad----~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~------------------~sRGcaFV 170 (510)
T KOG0144|consen 113 YAD----GERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDG------------------LSRGCAFV 170 (510)
T ss_pred ccc----hhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccc------------------cccceeEE
Confidence 211 111 1134689999999999999999999999999999999987431 13899999
Q ss_pred EeCCHHHHHHHHHHHcCCCCCC---CceEEEEcccCCCCCC
Q 015515 353 EYESVELAEKAIAELNDEGNWR---SGLRVRLMLRRGSKPA 390 (405)
Q Consensus 353 EFes~E~A~kAv~~ln~~~~~~---~glkV~ll~~~~~K~~ 390 (405)
.|+++|.|..|++.||+..-.+ .-|-|+++.++-.|.+
T Consensus 171 ~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 171 KFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred EEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 9999999999999999875443 3588999998877754
No 51
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.17 E-value=4.9e-11 Score=111.02 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=70.6
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln 368 (405)
.+|-|.||-+-++-++|+.+|++||.|-+|-|-+|+.+.. .+|||||-|.+..+|++|++.|+
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~-----------------sRgFaFVrf~~k~daedA~damD 76 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQ-----------------SRGFAFVRFHDKRDAEDALDAMD 76 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceeccccccccc-----------------ccceeEEEeeecchHHHHHHhhc
Confidence 4789999999999999999999999999999987765432 38999999999999999999999
Q ss_pred CCCCCCCceEEEEcc
Q 015515 369 DEGNWRSGLRVRLML 383 (405)
Q Consensus 369 ~~~~~~~glkV~ll~ 383 (405)
+..+.++.|+|.++.
T Consensus 77 G~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 77 GAVLDGRELRVQMAR 91 (256)
T ss_pred ceeeccceeeehhhh
Confidence 999999999998765
No 52
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=3e-12 Score=117.01 Aligned_cols=83 Identities=22% Similarity=0.254 Sum_probs=76.3
Q ss_pred hhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
-.++.-|||+|||++.|+.+|..+||+||+|.+|.++||+.+|++ |||||.+|++..+...||
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKS-----------------KGFaFLcYEDQRSTILAV 94 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKS-----------------KGFAFLCYEDQRSTILAV 94 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcc-----------------cceEEEEecCccceEEEE
Confidence 356789999999999999999999999999999999999987764 999999999999999999
Q ss_pred HHHcCCCCCCCceEEEEccc
Q 015515 365 AELNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~~ 384 (405)
..||+..+.++.|||.-...
T Consensus 95 DN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 95 DNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred eccCCceecceeEEeeeccc
Confidence 99999999999999986554
No 53
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=1.9e-10 Score=116.91 Aligned_cols=140 Identities=26% Similarity=0.294 Sum_probs=103.3
Q ss_pred HHhhhcCCCCCceecccccch-hhhHhhh------cCHHHHHHHhhc--cccceeeccccccccCCCCcchhhhhh-cce
Q 015515 220 LIRFILKDPEGYVPISTVASF-KKIKAII------SSHSHLASVLRK--SSKLVVSEDGKKIKRQNPLTESDLEEL-QSR 289 (405)
Q Consensus 220 L~~~i~k~~eG~Vpi~~i~sF-kRmk~Lt------~d~~~I~eAL~~--S~~LeVsedg~kVRR~~Pl~e~~~~~~-~~r 289 (405)
+++.|++-.+|-|.+.+..+- +|+|+-. .+-...+.|-+. +..+.|......|.-.+|..+.+.+.+ +-+
T Consensus 181 Ilee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VK 260 (506)
T KOG0117|consen 181 ILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVK 260 (506)
T ss_pred HHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhhee
Confidence 444567788999988887764 3333211 122333333222 335677766667777776655443333 335
Q ss_pred eEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 015515 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~ 369 (405)
.|||+||+.++|+|.|+++|+.||.|++|..+ |.||||-|.++++|.+|++++|+
T Consensus 261 vLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-------------------------rDYaFVHf~eR~davkAm~~~ng 315 (506)
T KOG0117|consen 261 VLYVRNLMESTTEETLKKLFNEFGKVERVKKP-------------------------RDYAFVHFAEREDAVKAMKETNG 315 (506)
T ss_pred eeeeeccchhhhHHHHHHHHHhccceEEeecc-------------------------cceeEEeecchHHHHHHHHHhcC
Confidence 89999999999999999999999999999764 45999999999999999999999
Q ss_pred CCCCCCceEEEEccc
Q 015515 370 EGNWRSGLRVRLMLR 384 (405)
Q Consensus 370 ~~~~~~glkV~ll~~ 384 (405)
..+.+.-|-|.|+..
T Consensus 316 keldG~~iEvtLAKP 330 (506)
T KOG0117|consen 316 KELDGSPIEVTLAKP 330 (506)
T ss_pred ceecCceEEEEecCC
Confidence 999998899998764
No 54
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.14 E-value=8.3e-11 Score=121.71 Aligned_cols=82 Identities=32% Similarity=0.426 Sum_probs=75.3
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln 368 (405)
++|||+|+|+++++++|.++|+..|.|.++++..|+.+|+. |||+|+||.+.++|++|++.||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~-----------------~G~~f~~~~~~~~~~~a~~~lN 81 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKP-----------------KGFGFCEFTDEETAERAIRNLN 81 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCc-----------------CceeeEecCchhhHHHHHHhcC
Confidence 79999999999999999999999999999999999876652 8999999999999999999999
Q ss_pred CCCCCCCceEEEEcccCCC
Q 015515 369 DEGNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 369 ~~~~~~~glkV~ll~~~~~ 387 (405)
+.++.++.|+|.+......
T Consensus 82 g~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 82 GAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred CcccCCceEEeecccccch
Confidence 9999999899988765544
No 55
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.14 E-value=1.3e-10 Score=122.30 Aligned_cols=75 Identities=21% Similarity=0.185 Sum_probs=66.1
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
+++|||+|||.++++++|+++|+.||.|.+|+|++. ||||||||++.|+|++|++.|
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----------------------k~~afVef~~~e~A~~Ai~~~ 58 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----------------------KRQALVEFEDEESAKACVNFA 58 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----------------------CCEEEEEeCchHHHHHHHHHh
Confidence 689999999999999999999999999999998631 689999999999999999975
Q ss_pred --cCCCCCCCceEEEEcccC
Q 015515 368 --NDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 368 --n~~~~~~~glkV~ll~~~ 385 (405)
++..++++.|+|.+...+
T Consensus 59 ~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 59 TSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred hcCCceEcCeEEEEEecCCc
Confidence 566777788899887644
No 56
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.3e-10 Score=111.96 Aligned_cols=71 Identities=23% Similarity=0.293 Sum_probs=63.3
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
.+.+||||+||+.-+|+++|++.|+.||.|..||+.++ |||+||-|++.|+|.+||-
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----------------------qGYaFVrF~tkEaAahAIv 218 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----------------------QGYAFVRFETKEAAAHAIV 218 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----------------------cceEEEEecchhhHHHHHH
Confidence 45789999999999999999999999999999999643 8999999999999999999
Q ss_pred HHcCCCCCCCceEE
Q 015515 366 ELNDEGNWRSGLRV 379 (405)
Q Consensus 366 ~ln~~~~~~~glkV 379 (405)
.||+.++.+.-+|+
T Consensus 219 ~mNntei~G~~VkC 232 (321)
T KOG0148|consen 219 QMNNTEIGGQLVRC 232 (321)
T ss_pred HhcCceeCceEEEE
Confidence 99999886654443
No 57
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=1.2e-10 Score=111.63 Aligned_cols=119 Identities=19% Similarity=0.286 Sum_probs=91.7
Q ss_pred CHHHHHHHhhccccceeeccccccccCCCCcchhhhhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCC
Q 015515 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (405)
Q Consensus 249 d~~~I~eAL~~S~~LeVsedg~kVRR~~Pl~e~~~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~ 328 (405)
+.++..+|+..-+-|.+.....+|.-..|-. ..+....|||.+||..+|..+|+.+|+.||.|..-||+-|..++-
T Consensus 92 ~p~DAe~AintlNGLrLQ~KTIKVSyARPSs----~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~ 167 (360)
T KOG0145|consen 92 RPKDAEKAINTLNGLRLQNKTIKVSYARPSS----DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGL 167 (360)
T ss_pred ChHHHHHHHhhhcceeeccceEEEEeccCCh----hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccce
Confidence 3455566666666666665544444333332 346678999999999999999999999999999999988876543
Q ss_pred CCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCC--CceEEEEcccCCCC
Q 015515 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWR--SGLRVRLMLRRGSK 388 (405)
Q Consensus 329 ~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~--~glkV~ll~~~~~K 388 (405)
.||.+||.|+.+++|+.|++.||+..--+ ..|.|++++....+
T Consensus 168 -----------------srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 168 -----------------SRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQK 212 (360)
T ss_pred -----------------ecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccc
Confidence 28999999999999999999999976544 36889988876544
No 58
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=9.2e-11 Score=115.40 Aligned_cols=80 Identities=23% Similarity=0.259 Sum_probs=71.2
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..+.|+|.|||+..-+.||+.+|++||+|.+|.|+... | +.|||+||+|++.+||++|-++
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE----------R---------GSKGFGFVTmen~~dadRARa~ 155 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE----------R---------GSKGFGFVTMENPADADRARAE 155 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc----------C---------CCCccceEEecChhhHHHHHHH
Confidence 35789999999999999999999999999999997532 2 2499999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccC
Q 015515 367 LNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~ 385 (405)
|++....++.|.|+.+..|
T Consensus 156 LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 156 LHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred hhcceeeceEEEEeccchh
Confidence 9999999999999877654
No 59
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.12 E-value=4.7e-10 Score=84.30 Aligned_cols=73 Identities=36% Similarity=0.484 Sum_probs=62.2
Q ss_pred eEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 015515 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~ 369 (405)
+|+|+|||.+++.++|+++|+.||.|..+.+...... ..+|+|||+|.+.++|..|++.+++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~------------------~~~~~~~v~f~s~~~a~~a~~~~~~ 62 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT------------------KSKGFAFVEFEDEEDAEKALEALNG 62 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC------------------CcceEEEEEECCHHHHHHHHHHhCC
Confidence 5899999999999999999999999999999754321 1378999999999999999999998
Q ss_pred CCCCCCceEEE
Q 015515 370 EGNWRSGLRVR 380 (405)
Q Consensus 370 ~~~~~~glkV~ 380 (405)
..+++..+.|.
T Consensus 63 ~~~~~~~~~v~ 73 (74)
T cd00590 63 KELGGRPLRVE 73 (74)
T ss_pred CeECCeEEEEe
Confidence 87666666654
No 60
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.10 E-value=2.5e-10 Score=120.07 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=68.3
Q ss_pred cceeEEeeCCCc-cccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 287 ~~rtVyV~nLP~-d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
..++|||+||+. .+|+++|+++|+.||.|..|++++++ +|||||+|++.++|++|+.
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----------------------~g~afV~f~~~~~A~~Ai~ 331 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----------------------KETALIEMADPYQAQLALT 331 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHH
Confidence 457999999997 69999999999999999999997532 6899999999999999999
Q ss_pred HHcCCCCCCCceEEEEccc
Q 015515 366 ELNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~ 384 (405)
.||+..++++.|+|.+...
T Consensus 332 ~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 332 HLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred HhCCCEECCceEEEEEccc
Confidence 9999999999999987644
No 61
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=6.8e-11 Score=111.00 Aligned_cols=88 Identities=26% Similarity=0.331 Sum_probs=77.0
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
.+.|||||++|..++|+.-|...|-.||.|+.|.|-.|-.+. .++||+||||+-.|+|..|+.
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesq-----------------kHRgFgFVefe~aEDAaaAiD 70 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQ-----------------KHRGFGFVEFEEAEDAAAAID 70 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcc-----------------cccceeEEEeeccchhHHHhh
Confidence 357899999999999999999999999999999996654322 248999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSKPA 390 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K~~ 390 (405)
.||+.++.++.|+|.++...-.|.+
T Consensus 71 NMnesEL~GrtirVN~AkP~kikeg 95 (298)
T KOG0111|consen 71 NMNESELFGRTIRVNLAKPEKIKEG 95 (298)
T ss_pred cCchhhhcceeEEEeecCCccccCC
Confidence 9999999999999999987655543
No 62
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=2.5e-10 Score=109.95 Aligned_cols=81 Identities=23% Similarity=0.283 Sum_probs=73.7
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln 368 (405)
--|||+.|..+++.|+|++.|.+||+|.+.||+||..++++ |||+||-|-..++|+.||..||
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~Ks-----------------KGYgFVSf~~k~dAEnAI~~Mn 125 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKS-----------------KGYGFVSFPNKEDAENAIQQMN 125 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcc-----------------cceeEEeccchHHHHHHHHHhC
Confidence 36999999999999999999999999999999999877654 9999999999999999999999
Q ss_pred CCCCCCCceEEEEcccCC
Q 015515 369 DEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 369 ~~~~~~~glkV~ll~~~~ 386 (405)
+.=++++.||-..+.+|.
T Consensus 126 GqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 126 GQWLGRRTIRTNWATRKP 143 (321)
T ss_pred CeeeccceeeccccccCc
Confidence 998888888887777665
No 63
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.02 E-value=4.6e-10 Score=102.77 Aligned_cols=80 Identities=23% Similarity=0.236 Sum_probs=72.3
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
+..||||+||++.++++.|-++|-..|.|.+|+|-+++.+. ..+|||||||.++|+|+-|++.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~-----------------~~qGygF~Ef~~eedadYAiki 70 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQ-----------------KHQGYGFAEFRTEEDADYAIKI 70 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcc-----------------cccceeEEEEechhhhHHHHHH
Confidence 45799999999999999999999999999999997766432 2489999999999999999999
Q ss_pred HcCCCCCCCceEEEEcc
Q 015515 367 LNDEGNWRSGLRVRLML 383 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~ 383 (405)
||.-.+.++.|||..+.
T Consensus 71 ln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 71 LNMVKLYGRPIRVNKAS 87 (203)
T ss_pred HHHHHhcCceeEEEecc
Confidence 99999999999999887
No 64
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.00 E-value=1.3e-09 Score=81.13 Aligned_cols=55 Identities=42% Similarity=0.512 Sum_probs=47.2
Q ss_pred HHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEE
Q 015515 305 LMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (405)
Q Consensus 305 L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~glkV~l 381 (405)
|.++|++||+|..|++...+ +++|||+|++.++|++|++.||+..+.++.|+|.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----------------------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----------------------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----------------------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 67899999999999996321 37999999999999999999999998888888875
No 65
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=8.5e-10 Score=111.87 Aligned_cols=84 Identities=19% Similarity=0.304 Sum_probs=69.4
Q ss_pred hhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 015515 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (405)
Q Consensus 284 ~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (405)
.+.+...+||+.+|..++|.+|+++|++||.|..|.|++|+.++. .||||||.|.++++|.+|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~-----------------s~gcCFv~~~trk~a~~a 92 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQ-----------------SKGCCFVKYYTRKEADEA 92 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCc-----------------ccceEEEEeccHHHHHHH
Confidence 345567899999999999999999999999999999999976542 289999999999999999
Q ss_pred HHHHcCCCCCCC---ceEEEEccc
Q 015515 364 IAELNDEGNWRS---GLRVRLMLR 384 (405)
Q Consensus 364 v~~ln~~~~~~~---glkV~ll~~ 384 (405)
+..|.+..-... -|+|+.+..
T Consensus 93 ~~Alhn~ktlpG~~~pvqvk~Ad~ 116 (510)
T KOG0144|consen 93 INALHNQKTLPGMHHPVQVKYADG 116 (510)
T ss_pred HHHhhcccccCCCCcceeecccch
Confidence 999987643221 366766654
No 66
>smart00361 RRM_1 RNA recognition motif.
Probab=98.95 E-value=2.1e-09 Score=84.01 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=49.6
Q ss_pred HHHHHHHHh----hcCCeeEEE-EecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCc
Q 015515 302 HQNLMKIFS----AVGSVKTIR-TCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSG 376 (405)
Q Consensus 302 ~e~L~~~Fs----~fG~V~~Vr-i~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~g 376 (405)
+++|+++|+ +||.|.+|. +..++.+.. + ..+|||||+|++.++|.+|++.|++..+.++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~--------~-------~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYE--------N-------HKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCC--------C-------CCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 578889998 999999995 665653210 0 12899999999999999999999998877766
Q ss_pred eEE
Q 015515 377 LRV 379 (405)
Q Consensus 377 lkV 379 (405)
|++
T Consensus 67 l~~ 69 (70)
T smart00361 67 VKA 69 (70)
T ss_pred EEe
Confidence 655
No 67
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=2.2e-09 Score=111.44 Aligned_cols=163 Identities=21% Similarity=0.250 Sum_probs=105.3
Q ss_pred hcccccccCCCCCCCHHHHhhhc---CCCCCceecccccchhhhHhhhcC--HH----HHHHHhh-c-cccceeecc---
Q 015515 203 NQVEYYFSDLNLATTDHLIRFIL---KDPEGYVPISTVASFKKIKAIISS--HS----HLASVLR-K-SSKLVVSED--- 268 (405)
Q Consensus 203 kQvEfYFSD~NL~~D~fL~~~i~---k~~eG~Vpi~~i~sFkRmk~Lt~d--~~----~I~eAL~-~-S~~LeVsed--- 268 (405)
.|||-+||+..-.+-.|+...-. +.+-|||.+++...-+|..+.+.. +. .+.-|-+ . +..++-++.
T Consensus 20 ~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~v 99 (678)
T KOG0127|consen 20 EQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAV 99 (678)
T ss_pred hHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhh
Confidence 48889999998888888776432 346688887766655555444332 10 0000000 0 000110000
Q ss_pred ccccccCCCCcchhhhhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCcc
Q 015515 269 GKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKL 348 (405)
Q Consensus 269 g~kVRR~~Pl~e~~~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG 348 (405)
.+.+++..+-. +.-......|+|+|||+.+...+|+.+|+.||.|..|.|-+ +.+|++ .|
T Consensus 100 eK~~~q~~~~k--~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~---------------k~dgkl---cG 159 (678)
T KOG0127|consen 100 EKPIEQKRPTK--AKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPR---------------KKDGKL---CG 159 (678)
T ss_pred hcccccCCcch--hhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEccc---------------CCCCCc---cc
Confidence 01111111111 10112256899999999999999999999999999999832 223332 69
Q ss_pred EEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEcccC
Q 015515 349 HAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 349 ~aFVEFes~E~A~kAv~~ln~~~~~~~glkV~ll~~~ 385 (405)
||||.|....+|.+|++.+|+..+.++.|-|.++..+
T Consensus 160 FaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 160 FAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred eEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 9999999999999999999999999988888887654
No 68
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=2.6e-09 Score=110.92 Aligned_cols=81 Identities=27% Similarity=0.296 Sum_probs=68.2
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
.+||||+|||+|+|+++|.+.|++||.|..++|+.++.++.+ +|+|||.|.+..+|..||...
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~s-----------------kGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHS-----------------KGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCc-----------------ccceEEEeccHHHHHHHHHhc
Confidence 379999999999999999999999999999999998776543 899999999999999999977
Q ss_pred cC------CCCCCCceEEEEcccC
Q 015515 368 ND------EGNWRSGLRVRLMLRR 385 (405)
Q Consensus 368 n~------~~~~~~glkV~ll~~~ 385 (405)
+- ..+.++-|+|.++.+|
T Consensus 355 spa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 355 SPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred CccCCCceEEEeccEEeeeeccch
Confidence 32 2344566788776654
No 69
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1e-08 Score=104.76 Aligned_cols=111 Identities=26% Similarity=0.319 Sum_probs=83.2
Q ss_pred CHHHHHHHhhccccceeeccccccccCCCCcchhhhhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCC
Q 015515 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (405)
Q Consensus 249 d~~~I~eAL~~S~~LeVsedg~kVRR~~Pl~e~~~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~ 328 (405)
+...+..||.+-+.-.+. |+.||-- |. ..+...|||+||+++++...|.++|+.||+|.+|++..+.+
T Consensus 46 ~~~da~~A~~~~n~~~~~--~~~~rim--~s-----~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~--- 113 (369)
T KOG0123|consen 46 QPADAERALDTMNFDVLK--GKPIRIM--WS-----QRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN--- 113 (369)
T ss_pred CHHHHHHHHHHcCCcccC--CcEEEee--hh-----ccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC---
Confidence 445566666655433332 3333321 11 12333499999999999999999999999999999976542
Q ss_pred CCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEcccCCCC
Q 015515 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 329 ~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~glkV~ll~~~~~K 388 (405)
| .||| ||+|+++++|.+|++.||+..+.+..|.|.+...+..+
T Consensus 114 ------------g----~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 114 ------------G----SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred ------------C----ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 1 3899 99999999999999999999999999999887765444
No 70
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=5.1e-09 Score=100.61 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=72.4
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
...|+|.-||..+|.|+|+.+|+..|+|+++.++||+.+|.+ -||+||.|-+++||++|+..|
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqS-----------------LGYGFVNYv~p~DAe~Aintl 103 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQS-----------------LGYGFVNYVRPKDAEKAINTL 103 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccc-----------------cccceeeecChHHHHHHHhhh
Confidence 346888889999999999999999999999999999866543 689999999999999999999
Q ss_pred cCCCCCCCceEEEEcccC
Q 015515 368 NDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 368 n~~~~~~~glkV~ll~~~ 385 (405)
|+-++.-..|||.+++.-
T Consensus 104 NGLrLQ~KTIKVSyARPS 121 (360)
T KOG0145|consen 104 NGLRLQNKTIKVSYARPS 121 (360)
T ss_pred cceeeccceEEEEeccCC
Confidence 998887788999988754
No 71
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.84 E-value=1.1e-08 Score=104.13 Aligned_cols=80 Identities=26% Similarity=0.293 Sum_probs=69.3
Q ss_pred hcceeEEeeCCCccccHHHHHHHHh-hcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs-~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
...|+|||.|||+|..+++|+++|. +.|+|+.|.++.|.. +| .+|||.|||+++|.++||+
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-----------GK-------~rGcavVEFk~~E~~qKa~ 103 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-----------GK-------ARGCAVVEFKDPENVQKAL 103 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-----------CC-------cCCceEEEeeCHHHHHHHH
Confidence 3567899999999999999999996 689999999988742 22 2899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEcc
Q 015515 365 AELNDEGNWRSGLRVRLML 383 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~ 383 (405)
+.||...+.++.|+|+-..
T Consensus 104 E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 104 EKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred HHhhhccccCceEEEeccC
Confidence 9999998888888886443
No 72
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.83 E-value=5.5e-09 Score=109.60 Aligned_cols=74 Identities=23% Similarity=0.305 Sum_probs=58.6
Q ss_pred hhcceeEEeeCCCccccHHHHHHHHhhcC------------CeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEE
Q 015515 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVG------------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFV 352 (405)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG------------~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFV 352 (405)
....++|||+|||+++|+++|+++|+.|+ .|..|.+. ..+|||||
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~kg~afV 228 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----------------------KEKNFAFL 228 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----------------------CCCCEEEE
Confidence 35678999999999999999999999862 33444432 12789999
Q ss_pred EeCCHHHHHHHHHHHcCCCCCCCceEEEEc
Q 015515 353 EYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (405)
Q Consensus 353 EFes~E~A~kAv~~ln~~~~~~~glkV~ll 382 (405)
||++.|+|.+||+ |++..+.+..|+|...
T Consensus 229 eF~~~e~A~~Al~-l~g~~~~g~~l~v~r~ 257 (509)
T TIGR01642 229 EFRTVEEATFAMA-LDSIIYSNVFLKIRRP 257 (509)
T ss_pred EeCCHHHHhhhhc-CCCeEeeCceeEecCc
Confidence 9999999999994 8988777766776543
No 73
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.83 E-value=5.8e-09 Score=95.65 Aligned_cols=170 Identities=14% Similarity=0.213 Sum_probs=106.4
Q ss_pred CCChHHHHHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeeccccc
Q 015515 192 GLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKK 271 (405)
Q Consensus 192 ~~~~e~~~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsedg~k 271 (405)
.++++++-.|.-|+--- -+...++|+..... .+-||+. |. ..+....|++-.+.+.+=..-.+
T Consensus 20 kvs~~~l~EL~iqagpV-v~i~iPkDrv~~~~---qGygF~E------f~-------~eedadYAikiln~VkLYgrpIr 82 (203)
T KOG0131|consen 20 KVSEELLYELFIQAGPV-VNLHIPKDRVTQKH---QGYGFAE------FR-------TEEDADYAIKILNMVKLYGRPIR 82 (203)
T ss_pred HHHHHHHHHHHHhcCce-eeeecchhhhcccc---cceeEEE------Ee-------chhhhHHHHHHHHHHHhcCceeE
Confidence 34455555555555432 23467777776532 2334443 32 12333344443333433333333
Q ss_pred cccCCCCcchhhhhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEE-EEecCCCCCCCCCCCCCcccccCcccCCccEE
Q 015515 272 IKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTI-RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHA 350 (405)
Q Consensus 272 VRR~~Pl~e~~~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~V-ri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~a 350 (405)
|++....... ..-...+||+||..++++..|-++|+.||.+... .++++..++. .+||+
T Consensus 83 v~kas~~~~n---l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~-----------------~~~~g 142 (203)
T KOG0131|consen 83 VNKASAHQKN---LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGN-----------------PKGFG 142 (203)
T ss_pred EEeccccccc---ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCC-----------------CCCCe
Confidence 3333311111 1123579999999999999999999999997664 4555544332 27899
Q ss_pred EEEeCCHHHHHHHHHHHcCCCCCCCceEEEEcccCCCCCCCCCCCCCCCCCCc
Q 015515 351 FVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRRGSKPAQVKGKKGPEGEYL 403 (405)
Q Consensus 351 FVEFes~E~A~kAv~~ln~~~~~~~glkV~ll~~~~~K~~~grg~~Gg~~~~~ 403 (405)
||.|++.|.+.+|+..||+..++.+.|.|.++.++..| |.|-|++.++
T Consensus 143 ~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k-----g~~~g~~~~r 190 (203)
T KOG0131|consen 143 FINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK-----GERHGTAAER 190 (203)
T ss_pred EEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC-----cccCCCHHHH
Confidence 99999999999999999999998889999998876666 4444554443
No 74
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.81 E-value=7.2e-09 Score=111.20 Aligned_cols=82 Identities=21% Similarity=0.334 Sum_probs=72.8
Q ss_pred hhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
.+.+|||||++|+..+++++|..+|+.||+|.+|.++- ++|||||++....+|++|+
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----------------------~R~cAfI~M~~RqdA~kal 474 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----------------------PRGCAFIKMVRRQDAEKAL 474 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----------------------CCceeEEEEeehhHHHHHH
Confidence 46789999999999999999999999999999999863 3789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEcccCCCCC
Q 015515 365 AELNDEGNWRSGLRVRLMLRRGSKP 389 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~~~~~K~ 389 (405)
..|++..+....|||.+...++.|.
T Consensus 475 qkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 475 QKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred HHHhcccccceeeEEeeeccCCcch
Confidence 9999888877778888777666553
No 75
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.79 E-value=1.3e-08 Score=94.81 Aligned_cols=82 Identities=24% Similarity=0.351 Sum_probs=69.9
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhc-CCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~f-G~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...-+||..+|..+.+.+|..+|..| |.|..+|+.|.+.+|. .||||||||+++|.|+-|.+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGN-----------------SKgYAFVEFEs~eVA~IaAE 110 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGN-----------------SKGYAFVEFESEEVAKIAAE 110 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCC-----------------cCceEEEEeccHHHHHHHHH
Confidence 34578999999999999999999998 7888888866654433 39999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccC
Q 015515 366 ELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~ 385 (405)
.||+..+++.-|.|.+|-..
T Consensus 111 TMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 111 TMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred HhhhhhhhhheeeeEEeCch
Confidence 99999998888899887654
No 76
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=4.1e-08 Score=97.56 Aligned_cols=81 Identities=23% Similarity=0.320 Sum_probs=68.1
Q ss_pred hhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 015515 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (405)
Q Consensus 284 ~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (405)
++...+||||++|-..+++.+|++.|.+||+|++|++.. .++||||+|.+.++|++|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-----------------------~~~CAFv~ftTR~aAE~A 280 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-----------------------RKGCAFVTFTTREAAEKA 280 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-----------------------ccccceeeehhhHHHHHH
Confidence 345678999999988999999999999999999999852 277999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEcccCCCC
Q 015515 364 IAELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 364 v~~ln~~~~~~~glkV~ll~~~~~K 388 (405)
.++.-+ .+..+|.||.+.+.+..+
T Consensus 281 ae~~~n-~lvI~G~Rl~i~Wg~~~~ 304 (377)
T KOG0153|consen 281 AEKSFN-KLVINGFRLKIKWGRPKQ 304 (377)
T ss_pred HHhhcc-eeeecceEEEEEeCCCcc
Confidence 998776 344567788888777633
No 77
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.73 E-value=1.7e-08 Score=98.27 Aligned_cols=75 Identities=25% Similarity=0.240 Sum_probs=69.0
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
.+.+|+|+||...++.++|++.|.+||.|..+.|. |+|+||-|+-.|+|..|++.
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------------------------kdy~fvh~d~~eda~~air~ 131 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------------------------KDYAFVHFDRAEDAVEAIRG 131 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeee-------------------------cceeEEEEeeccchHHHHhc
Confidence 45689999999999999999999999999999885 77999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~ 386 (405)
|++.++.+..|+|.|...|.
T Consensus 132 l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 132 LDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred ccccccccceeeeeeecccc
Confidence 99999999999999876653
No 78
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=1.1e-08 Score=102.21 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=68.5
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln 368 (405)
+.|||+.+.++..++.|+..|..||.|++|.|.-|-.++ .+||||||||+-.|.|+.|++.||
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~-----------------kHKgFAFVEYEvPEaAqLAlEqMN 176 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATG-----------------KHKGFAFVEYEVPEAAQLALEQMN 176 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccc-----------------cccceEEEEEeCcHHHHHHHHHhc
Confidence 689999999999999999999999999999996654332 249999999999999999999999
Q ss_pred CCCCCCCceEEEE
Q 015515 369 DEGNWRSGLRVRL 381 (405)
Q Consensus 369 ~~~~~~~glkV~l 381 (405)
+..+++++|||.+
T Consensus 177 g~mlGGRNiKVgr 189 (544)
T KOG0124|consen 177 GQMLGGRNIKVGR 189 (544)
T ss_pred cccccCccccccC
Confidence 9999999999874
No 79
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=7e-08 Score=103.85 Aligned_cols=32 Identities=38% Similarity=0.684 Sum_probs=13.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015515 77 PPPPPAAAMVHPHPPPPHPPSPHHVYPPHGTGA 109 (405)
Q Consensus 77 ppppp~~~~~~~~~ppp~p~~~~~~~~~~~~~~ 109 (405)
||||||++.+.++|||||| +++-+.+|++|++
T Consensus 570 PPpPppppg~~gppPPPpp-~g~~Gg~ppPP~~ 601 (1102)
T KOG1924|consen 570 PPPPPPPPGGGGPPPPPPP-GGFLGGPPPPPPP 601 (1102)
T ss_pred CCccCCCCCCCCCCCcCCC-CCCCCCCCCCCCC
Confidence 3444444444434444433 4444434444443
No 80
>KOG2590 consensus RNA-binding protein LARP/SRO9 and related La domain proteins [Posttranslational modification, protein turnover, chaperones; Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.6e-08 Score=104.67 Aligned_cols=64 Identities=27% Similarity=0.449 Sum_probs=57.5
Q ss_pred HHHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeecc
Q 015515 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSED 268 (405)
Q Consensus 198 ~~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsed 268 (405)
.+.|.+|||||||.+||.+|.||++ |||+|.+|++|+||..|+.|+++|.+||+.+-+|++..|
T Consensus 301 ~~~~~~~ie~~FSeE~~~~d~~n~~-------k~~~l~~ia~F~r~ad~s~d~nli~~alr~s~ive~~~d 364 (448)
T KOG2590|consen 301 IAFIQEPIEFYFSEENLQRDRFNRE-------KFVPLRVIAKFKRVADLSSDINLILAALRNSLIVEETGD 364 (448)
T ss_pred ccccccccccccchHHHhhhhhhhc-------ccchhhhhhhhhhhhhcccCHHHHHHHHhhhhhhhccch
Confidence 4788899999999999999999887 678899999999999999999999999999977666533
No 81
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.64 E-value=3.1e-08 Score=96.57 Aligned_cols=71 Identities=25% Similarity=0.284 Sum_probs=66.3
Q ss_pred eEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 015515 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~ 369 (405)
.|||+|||..+++.+|+.+|++||+|..+.|+ |+|+||-.|+...|+.|+..|++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-------------------------KNYgFVHiEdktaaedairNLhg 58 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV-------------------------KNYGFVHIEDKTAAEDAIRNLHG 58 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee-------------------------cccceEEeecccccHHHHhhccc
Confidence 58999999999999999999999999999996 77999999999999999999999
Q ss_pred CCCCCCceEEEEcccC
Q 015515 370 EGNWRSGLRVRLMLRR 385 (405)
Q Consensus 370 ~~~~~~glkV~ll~~~ 385 (405)
..+.+-.|+|.....|
T Consensus 59 YtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 59 YTLHGVNINVEASKSK 74 (346)
T ss_pred ceecceEEEEEecccc
Confidence 9998888999877665
No 82
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5.8e-08 Score=96.72 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=70.2
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
....|||..|..-+|.++|+-+||.||.|.++.+++++.+|.+ --||||||++.+++++|+-.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgds-----------------LqyaFiEFen~escE~AyFK 300 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDS-----------------LQYAFIEFENKESCEQAYFK 300 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccch-----------------hheeeeeecchhhHHHHHhh
Confidence 3568999999999999999999999999999999999866543 35899999999999999999
Q ss_pred HcCCCCCCCceEEEEc
Q 015515 367 LNDEGNWRSGLRVRLM 382 (405)
Q Consensus 367 ln~~~~~~~glkV~ll 382 (405)
|.+..+.++.|.|.+.
T Consensus 301 MdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 301 MDNVLIDDRRIHVDFS 316 (479)
T ss_pred hcceeeccceEEeehh
Confidence 9998888888888764
No 83
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.63 E-value=1e-07 Score=89.97 Aligned_cols=78 Identities=22% Similarity=0.292 Sum_probs=68.7
Q ss_pred eeEEeeCCCccccHHHHHH----HHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 289 RIVVAENLPEDHCHQNLMK----IFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~----~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
.||||.||++....++|++ +|++||+|..|..++.. | -+|-|||.|.+.+.|-.|+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~-------------K-------mRGQA~VvFk~~~~As~A~ 69 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP-------------K-------MRGQAFVVFKETEAASAAL 69 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC-------------C-------ccCceEEEecChhHHHHHH
Confidence 3999999999999998887 99999999999997432 1 1789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEcccCC
Q 015515 365 AELNDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~~~~ 386 (405)
+.|+|..+.+.-|++.++..+.
T Consensus 70 r~l~gfpFygK~mriqyA~s~s 91 (221)
T KOG4206|consen 70 RALQGFPFYGKPMRIQYAKSDS 91 (221)
T ss_pred HHhcCCcccCchhheecccCcc
Confidence 9999999999999998877643
No 84
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.62 E-value=6.1e-08 Score=101.07 Aligned_cols=79 Identities=22% Similarity=0.261 Sum_probs=69.7
Q ss_pred EEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCC
Q 015515 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (405)
Q Consensus 291 VyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~ 370 (405)
|||+||...++++.|+.+|+.||.|+.|.+.++-.+|. .|||+||+|.+.++|.+|+..||+-
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~-----------------skgfGfi~f~~~~~ar~a~e~lngf 343 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGR-----------------SKGFGFITFVNKEDARKALEQLNGF 343 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeecccccccc-----------------ccCcceEEEecHHHHHHHHHHhccc
Confidence 99999999999999999999999999999976643332 3899999999999999999999998
Q ss_pred CCCCCceEEEEcccCC
Q 015515 371 GNWRSGLRVRLMLRRG 386 (405)
Q Consensus 371 ~~~~~glkV~ll~~~~ 386 (405)
.+-|+-|+|.+..-+.
T Consensus 344 elAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 344 ELAGRLIKVSVVTERV 359 (549)
T ss_pred eecCceEEEEEeeeec
Confidence 8888889988766543
No 85
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.57 E-value=1.8e-07 Score=99.99 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=68.0
Q ss_pred eEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 015515 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~ 369 (405)
+|||+||++++|.++|+..|+.+|.|.+|+|..-+. +.. -+..+|||||||.+.++|+.|++.|++
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd---------~~~-----k~lSmGfgFVEF~~~e~A~~a~k~lqg 582 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKD---------PAN-----KYLSMGFGFVEFAKPESAQAALKALQG 582 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEecccc---------ccc-----cccccceeEEEecCHHHHHHHHHHhcC
Confidence 399999999999999999999999999999964321 000 122479999999999999999999999
Q ss_pred CCCCCCceEEEEcc
Q 015515 370 EGNWRSGLRVRLML 383 (405)
Q Consensus 370 ~~~~~~glkV~ll~ 383 (405)
..+.+..|.|++..
T Consensus 583 tvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 583 TVLDGHKLELKISE 596 (725)
T ss_pred ceecCceEEEEecc
Confidence 99988889888877
No 86
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.57 E-value=4.8e-08 Score=97.45 Aligned_cols=149 Identities=16% Similarity=0.282 Sum_probs=95.0
Q ss_pred cccccccCCCCCCCHHHHhhh---cCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeeccccccccCCCCcc
Q 015515 204 QVEYYFSDLNLATTDHLIRFI---LKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTE 280 (405)
Q Consensus 204 QvEfYFSD~NL~~D~fL~~~i---~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsedg~kVRR~~Pl~e 280 (405)
.|.+||+..-...|...++.. .+...|||.++.-....++.. ... +.| |+..|.-+..++.
T Consensus 22 ~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-------------~~~-h~~--dgr~ve~k~av~r 85 (311)
T KOG4205|consen 22 SLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-------------ART-HKL--DGRSVEPKRAVSR 85 (311)
T ss_pred HHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-------------ccc-ccc--CCccccceeccCc
Confidence 344789888888887766632 234677777765444433322 111 111 2222222211111
Q ss_pred hhh----hhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCC
Q 015515 281 SDL----EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (405)
Q Consensus 281 ~~~----~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes 356 (405)
.+. +....+.|||++|+.++++++|++.|++||.|..+-+++|.++.+ .+||+||+|++
T Consensus 86 ~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~-----------------~rgFgfv~~~~ 148 (311)
T KOG4205|consen 86 EDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSR-----------------PRGFGFVTFDS 148 (311)
T ss_pred ccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccc-----------------cccceeeEecc
Confidence 111 111356899999999999999999999999999999988875432 28999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEcccCC
Q 015515 357 VELAEKAIAELNDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 357 ~E~A~kAv~~ln~~~~~~~glkV~ll~~~~ 386 (405)
++++++++.. .-..+.+..+.|+.+..+.
T Consensus 149 e~sVdkv~~~-~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 149 EDSVDKVTLQ-KFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred ccccceeccc-ceeeecCceeeEeeccchh
Confidence 9999988763 3334445556666655543
No 87
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.56 E-value=1.3e-07 Score=97.78 Aligned_cols=78 Identities=23% Similarity=0.250 Sum_probs=58.6
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
..+|||+|||.+++.++|+++|+.||.|+..+|..-. +..+ +.+|+||+|++.++++.||..-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~----------~~~~-------~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS----------PGGK-------NPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEec----------cCCC-------cCceEEEEEeecchhhhhhhcC
Confidence 3469999999999999999999999999999884211 1111 1379999999999999999864
Q ss_pred cCCCCCCCceEEEEcc
Q 015515 368 NDEGNWRSGLRVRLML 383 (405)
Q Consensus 368 n~~~~~~~glkV~ll~ 383 (405)
-..+++..|.|..-+
T Consensus 351 -p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 351 -PLEIGGRKLNVEEKR 365 (419)
T ss_pred -ccccCCeeEEEEecc
Confidence 444445555555433
No 88
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=9.7e-08 Score=90.51 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=61.5
Q ss_pred eEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 015515 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~ 369 (405)
.|||++|++.+.+.+|+++|.+||.|..|.|. .||+||+|++.-+|+.||..|++
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------------------------~gf~fv~fed~rda~Dav~~l~~ 57 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------------------------NGFGFVEFEDPRDADDAVHDLDG 57 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------------------------cccceeccCchhhhhcccchhcC
Confidence 58999999999999999999999999999882 67899999999999999999999
Q ss_pred CCCCCCceEEEEcccCCCC
Q 015515 370 EGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 370 ~~~~~~glkV~ll~~~~~K 388 (405)
..+.+.. +.+...+...
T Consensus 58 ~~l~~e~--~vve~~r~~~ 74 (216)
T KOG0106|consen 58 KELCGER--LVVEHARGKR 74 (216)
T ss_pred ceeccee--eeeecccccc
Confidence 9887655 4444444433
No 89
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.49 E-value=2.7e-07 Score=99.41 Aligned_cols=10 Identities=60% Similarity=1.368 Sum_probs=3.7
Q ss_pred CCCCCCCCCC
Q 015515 89 HPPPPHPPSP 98 (405)
Q Consensus 89 ~~ppp~p~~~ 98 (405)
.+|||||+++
T Consensus 594 g~ppPP~~gm 603 (1102)
T KOG1924|consen 594 GPPPPPPPGM 603 (1102)
T ss_pred CCCCCCCCCc
Confidence 3333333333
No 90
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=3.4e-08 Score=99.69 Aligned_cols=61 Identities=23% Similarity=0.453 Sum_probs=54.5
Q ss_pred HHHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhcc
Q 015515 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS 260 (405)
Q Consensus 198 ~~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S 260 (405)
+..++.|||||||.+||..|.||++++. .+||||+.+|..|.|.+++..|..+|..||+.+
T Consensus 271 I~a~k~QiEyYFseenl~~d~~lrkk~~--kaGf~plsfi~kf~Rn~Sf~gd~nLilaa~ke~ 331 (438)
T COG5193 271 IMAKKEQIEYYFSEENLKSDEFLRKKFK--KAGFIPLSFIGKFYRNLSFGGDKNLILAAMKEV 331 (438)
T ss_pred hhhHHhhhHhhhhHHhhhhhhHHHhhhh--hcccccHhhhhhhhhccccCCchhhhHHHHHHH
Confidence 3667779999999999999999999964 459999999999999999999999998888765
No 91
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=9.3e-08 Score=97.77 Aligned_cols=86 Identities=30% Similarity=0.401 Sum_probs=73.2
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
.....|||+|+...++.+.|+++|+.||+|..++|..+.. | ..+||+||+|++.++|.+|+.
T Consensus 268 ~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~---------------g---~skG~gfV~fs~~eeA~~A~~ 329 (369)
T KOG0123|consen 268 LQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDEN---------------G---KSKGFGFVEFSSPEEAKKAMT 329 (369)
T ss_pred ccccccccccCccccchhHHHHHHhcccceeeEEEEeccC---------------C---CccceEEEEcCCHHHHHHHHH
Confidence 4567899999999999999999999999999999976531 1 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSKP 389 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K~ 389 (405)
.+|+..+.+.-|.|.++..+..+.
T Consensus 330 ~~n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 330 EMNGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred hhChhhhcCCchhhhHHhhhccch
Confidence 999999888888888877555443
No 92
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.47 E-value=3.6e-07 Score=87.84 Aligned_cols=86 Identities=21% Similarity=0.190 Sum_probs=74.5
Q ss_pred hhhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 015515 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (405)
Q Consensus 283 ~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (405)
.++++.++|||+|+.+.+|.++++..|+.||.|..|.|..++..+. .|||+||||.+.+.+++
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~-----------------~k~~~yvef~~~~~~~~ 158 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGH-----------------PKGFAYVEFSSYELVEE 158 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCC-----------------cceeEEEecccHhhhHH
Confidence 3567889999999999999999999999999999999977764321 28999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEcccCC
Q 015515 363 AIAELNDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 363 Av~~ln~~~~~~~glkV~ll~~~~ 386 (405)
|+. |++..+.+..+.|...+.+.
T Consensus 159 ay~-l~gs~i~~~~i~vt~~r~~~ 181 (231)
T KOG4209|consen 159 AYK-LDGSEIPGPAIEVTLKRTNV 181 (231)
T ss_pred Hhh-cCCcccccccceeeeeeeec
Confidence 999 99999888888888777663
No 93
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.45 E-value=3.1e-07 Score=93.72 Aligned_cols=74 Identities=27% Similarity=0.243 Sum_probs=65.1
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
+.++|||+|||.++|++.|++-|..||.|+.+.|+... | .|| .|.|.+.++|++|++.
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~G-------------k-------skG--VVrF~s~edAEra~a~ 592 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENG-------------K-------SKG--VVRFFSPEDAERACAL 592 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhccC-------------C-------ccc--eEEecCHHHHHHHHHH
Confidence 56789999999999999999999999999999885322 1 144 9999999999999999
Q ss_pred HcCCCCCCCceEEEEc
Q 015515 367 LNDEGNWRSGLRVRLM 382 (405)
Q Consensus 367 ln~~~~~~~glkV~ll 382 (405)
|++..+.++.|+|++.
T Consensus 593 Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 593 MNGSRLDGRNIKVTYF 608 (608)
T ss_pred hccCcccCceeeeeeC
Confidence 9999999999999863
No 94
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.38 E-value=1.3e-06 Score=87.61 Aligned_cols=111 Identities=19% Similarity=0.223 Sum_probs=82.4
Q ss_pred HHHHhhccccceeeccccccccCCCCc------chhhhh-hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCC
Q 015515 253 LASVLRKSSKLVVSEDGKKIKRQNPLT------ESDLEE-LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQT 325 (405)
Q Consensus 253 I~eAL~~S~~LeVsedg~kVRR~~Pl~------e~~~~~-~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~ 325 (405)
..-||+..+..-+.....+|.|-.-++ +...++ ..-..|||..+..|.++++|+.+|+.||+|..+.+.+..+
T Consensus 168 AqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt 247 (544)
T KOG0124|consen 168 AQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT 247 (544)
T ss_pred HHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCC
Confidence 334455555455555555666654322 222232 2345899999999999999999999999999999987643
Q ss_pred CCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEE
Q 015515 326 SGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVR 380 (405)
Q Consensus 326 s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~glkV~ 380 (405)
.. ++|||+||||++..+...|+..||-..+++.-|||-
T Consensus 248 ~~-----------------~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 248 GR-----------------GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred CC-----------------CccceeeEEeccccchHHHhhhcchhhcccceEecc
Confidence 11 259999999999999999999999888888777774
No 95
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.37 E-value=4.4e-07 Score=87.78 Aligned_cols=86 Identities=17% Similarity=0.291 Sum_probs=74.9
Q ss_pred hhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
..+.+.|||--||.+....||..+|-.||.|.+..+.-|+.++. .|.|+||.|++..+|+.||
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQ-----------------SKCFGFVSfDNp~SaQaAI 344 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQ-----------------SKCFGFVSFDNPASAQAAI 344 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcccc-----------------ccceeeEecCCchhHHHHH
Confidence 45789999999999999999999999999999998887875543 2889999999999999999
Q ss_pred HHHcCCCCCCCceEEEEcccCCC
Q 015515 365 AELNDEGNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~~~~~ 387 (405)
..||+..++-+.|||.|-+.|..
T Consensus 345 qAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 345 QAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred HHhcchhhhhhhhhhhhcCcccc
Confidence 99999988777889988775543
No 96
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=3.5e-07 Score=95.63 Aligned_cols=72 Identities=28% Similarity=0.438 Sum_probs=63.1
Q ss_pred hhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
....++|+|-|||.++++++|+.+|+.||+|+.||+.+- .+|.+||||-+.-+|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----------------------~~~~~~v~FyDvR~A~~Al 129 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----------------------KRGIVFVEFYDVRDAERAL 129 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----------------------cCceEEEEEeehHhHHHHH
Confidence 467899999999999999999999999999999887321 1689999999999999999
Q ss_pred HHHcCCCCCCCceE
Q 015515 365 AELNDEGNWRSGLR 378 (405)
Q Consensus 365 ~~ln~~~~~~~glk 378 (405)
++|+...+.++.|+
T Consensus 130 k~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 130 KALNRREIAGKRIK 143 (549)
T ss_pred HHHHHHHhhhhhhc
Confidence 99998877766665
No 97
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.33 E-value=1.6e-06 Score=92.86 Aligned_cols=77 Identities=21% Similarity=0.362 Sum_probs=63.4
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
...|.|+|||+..+..+++++|+.||.|.+|||. +..+ + .+.+|||||+|-+..+|..|++.|
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlP--KK~~----------k-----~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLP--KKIG----------K-----GAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccc--hhhc----------c-----hhhccceeeeccCcHHHHHHHHhh
Confidence 4579999999999999999999999999999993 2111 1 134899999999999999999999
Q ss_pred cCCCCCCCceEEEE
Q 015515 368 NDEGNWRSGLRVRL 381 (405)
Q Consensus 368 n~~~~~~~glkV~l 381 (405)
....+.++.|-+.+
T Consensus 676 ~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEW 689 (725)
T ss_pred cccceechhhheeh
Confidence 98877777555444
No 98
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.17 E-value=9.9e-07 Score=83.27 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=66.9
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..|||||.||-..++++.|.++|-.-|.|..|-|..++.. + .| ||||+|+++....-|+..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~-----------~-------~k-Fa~v~f~~E~sv~~a~~L 68 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQ-----------E-------QK-FAYVFFPNENSVQLAGQL 68 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccC-----------C-------Cc-eeeeecccccchhhhhhh
Confidence 3589999999999999999999999999999988543321 1 15 999999999999999999
Q ss_pred HcCCCCCCCceEEEEccc
Q 015515 367 LNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~ 384 (405)
||+..+.++.|+|.+-+.
T Consensus 69 ~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 69 ENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred cccchhccchhhcccccC
Confidence 999988888888776543
No 99
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.15 E-value=3.4e-06 Score=81.69 Aligned_cols=82 Identities=21% Similarity=0.294 Sum_probs=67.5
Q ss_pred hhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
..++|.|||+-|...-.|||++++|..||.|+.+.+++-. +| ..||||||.|.+--||..||
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~---------------dg---~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP---------------DG---NSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC---------------CC---CCCCceEEEeccchHHHHHH
Confidence 3467899999999999999999999999999999987532 11 24999999999999999999
Q ss_pred HHHcCCCCCC---CceEEEEccc
Q 015515 365 AELNDEGNWR---SGLRVRLMLR 384 (405)
Q Consensus 365 ~~ln~~~~~~---~glkV~ll~~ 384 (405)
..|.+..-.- ..|-|+++.+
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADT 100 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADT 100 (371)
T ss_pred HHhcccccCCCCccceEEEeccc
Confidence 9999865443 2467777664
No 100
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.15 E-value=7.5e-06 Score=79.20 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=67.1
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
..+|+|.||++.++.++|+++|..||.++.+-+-+++. +. ..|+|-|.|+..++|++|++.+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-----------G~-------s~Gta~v~~~r~~DA~~avk~~ 144 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-----------GR-------SLGTADVSFNRRDDAERAVKKY 144 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-----------CC-------CCccceeeecchHhHHHHHHHh
Confidence 45899999999999999999999999999998876642 11 2689999999999999999999
Q ss_pred cCCCCCCCceEEEEccc
Q 015515 368 NDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 368 n~~~~~~~glkV~ll~~ 384 (405)
++-.+.+.-|++.++..
T Consensus 145 ~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 145 NGVALDGRPMKIEIISS 161 (243)
T ss_pred cCcccCCceeeeEEecC
Confidence 99877777777766543
No 101
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.12 E-value=7.9e-06 Score=85.79 Aligned_cols=81 Identities=20% Similarity=0.193 Sum_probs=67.2
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..|.|+|.+|...+---+|+.||++||+|.-..++... |+ . +.+.|+||++.+.++|.+||..
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNa----------Rs---P----GaRCYGfVTMSts~eAtkCI~h 466 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNA----------RS---P----GARCYGFVTMSTSAEATKCIEH 466 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecC----------CC---C----CcceeEEEEecchHHHHHHHHH
Confidence 35789999999999899999999999999988886432 21 1 1278999999999999999999
Q ss_pred HcCCCCCCCceEEEEccc
Q 015515 367 LNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~ 384 (405)
|.-..+.++-|.|.-+..
T Consensus 467 LHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 467 LHRTELHGRMISVEKAKN 484 (940)
T ss_pred hhhhhhcceeeeeeeccc
Confidence 999888888788876543
No 102
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.05 E-value=5e-06 Score=83.12 Aligned_cols=63 Identities=17% Similarity=0.259 Sum_probs=55.3
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
+.+.|||++|.+++++|.|++.|+.||+|..+.+.+++.++++ +||+||+|++.+....++..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rs-----------------rgFgfv~f~~~~~v~~vl~~ 67 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRS-----------------RGFGFVTFATPEGVDAVLNA 67 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCc-----------------ccccceecCCCcchheeecc
Confidence 5789999999999999999999999999999999988765432 89999999998888777554
No 103
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.05 E-value=8.7e-06 Score=77.12 Aligned_cols=163 Identities=17% Similarity=0.201 Sum_probs=108.5
Q ss_pred HHHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccch-hhhHhhhc-----CHHHHHHHhhcccccee-----e
Q 015515 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASF-KKIKAIIS-----SHSHLASVLRKSSKLVV-----S 266 (405)
Q Consensus 198 ~~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sF-kRmk~Lt~-----d~~~I~eAL~~S~~LeV-----s 266 (405)
.++++++|...||...=+-|--.++..++.++-||.++.+.+- .-+++|.. ..-.|..|..+|+.+.- .
T Consensus 23 ~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v 102 (221)
T KOG4206|consen 23 KDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFV 102 (221)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceec
Confidence 4778888889999887666666666667888899988875443 44444443 23455666666654321 1
Q ss_pred ccccc-----cccC-CCCcch----------------hhhhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCC
Q 015515 267 EDGKK-----IKRQ-NPLTES----------------DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQ 324 (405)
Q Consensus 267 edg~k-----VRR~-~Pl~e~----------------~~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk 324 (405)
+.+.+ +++. .+.... ........++++.|||.+++.+.|..+|..|.-.+.||++..+
T Consensus 103 ~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~ 182 (221)
T KOG4206|consen 103 EKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR 182 (221)
T ss_pred cccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC
Confidence 11111 1100 110000 0112345799999999999999999999999999999997432
Q ss_pred CCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCC-CCceEEEEc
Q 015515 325 TSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNW-RSGLRVRLM 382 (405)
Q Consensus 325 ~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~-~~glkV~ll 382 (405)
++.|||||.+...|.-|...+.+..+. ...|+|..+
T Consensus 183 ----------------------~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 183 ----------------------SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred ----------------------CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 678999999999999998888876654 334555443
No 104
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.87 E-value=3.5e-05 Score=77.03 Aligned_cols=89 Identities=22% Similarity=0.210 Sum_probs=64.3
Q ss_pred hhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcc-cccCcccCCccEEEEEeCCHHHHHH
Q 015515 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSA-KSEGMLFSNKLHAFVEYESVELAEK 362 (405)
Q Consensus 284 ~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~-k~~g~~~~~KG~aFVEFes~E~A~k 362 (405)
+......|||.|||.|+|.+++.++|++||-|.. +..++.. ..+-+ .-+|. .||=|.++|-.+|+.+.
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~-----d~~t~ep---k~KlYrd~~G~---lKGDaLc~y~K~ESVeL 198 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMR-----DPQTGEP---KVKLYRDNQGK---LKGDALCCYIKRESVEL 198 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEec-----cCCCCCe---eEEEEecCCCC---ccCceEEEeecccHHHH
Confidence 3445567999999999999999999999997632 2111110 00100 01122 28889999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEcc
Q 015515 363 AIAELNDEGNWRSGLRVRLML 383 (405)
Q Consensus 363 Av~~ln~~~~~~~glkV~ll~ 383 (405)
|++.|++..+.+..|+|..+.
T Consensus 199 A~~ilDe~~~rg~~~rVerAk 219 (382)
T KOG1548|consen 199 AIKILDEDELRGKKLRVERAK 219 (382)
T ss_pred HHHHhCcccccCcEEEEehhh
Confidence 999999999877777877654
No 105
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.76 E-value=0.00015 Score=59.32 Aligned_cols=67 Identities=19% Similarity=0.335 Sum_probs=47.5
Q ss_pred eeEEeeCCCccccHH----HHHHHHhhcC-CeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 015515 289 RIVVAENLPEDHCHQ----NLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (405)
Q Consensus 289 rtVyV~nLP~d~t~e----~L~~~Fs~fG-~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (405)
..|||.|||.+.... -|+.++.-|| +|..|. .+.|+|-|.+.|.|.+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------------------------~~tAilrF~~~~~A~RA 55 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------------------------GGTAILRFPNQEFAERA 55 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------------------------TT-EEEEESSHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------------------------CCEEEEEeCCHHHHHHH
Confidence 479999999887654 4677888887 565552 46799999999999999
Q ss_pred HHHHcCCCCCCCceEEEEc
Q 015515 364 IAELNDEGNWRSGLRVRLM 382 (405)
Q Consensus 364 v~~ln~~~~~~~glkV~ll 382 (405)
.+.|+++...++.|.|.+.
T Consensus 56 ~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 56 QKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp HHHHTT--SSSS--EEESS
T ss_pred HHhhcccccccceEEEEEc
Confidence 9999999999999999876
No 106
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.73 E-value=0.00021 Score=68.02 Aligned_cols=80 Identities=21% Similarity=0.205 Sum_probs=60.3
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
-|||||.|||.|+.--+|..+|..|---+...+.+. ++ +... -|.+|||+|.+..+|+.|+..|
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~T---sk------------~~~~-~~pvaFatF~s~q~A~aamnaL 97 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYT---SK------------GDQV-CKPVAFATFTSHQFALAAMNAL 97 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeec---cC------------CCcc-ccceEEEEecchHHHHHHHHHh
Confidence 589999999999999999999998855555544321 11 0111 1679999999999999999999
Q ss_pred cCCCCCC---CceEEEEcc
Q 015515 368 NDEGNWR---SGLRVRLML 383 (405)
Q Consensus 368 n~~~~~~---~glkV~ll~ 383 (405)
|+-++.- ..|++.|+.
T Consensus 98 NGvrFDpE~~stLhiElAK 116 (284)
T KOG1457|consen 98 NGVRFDPETGSTLHIELAK 116 (284)
T ss_pred cCeeeccccCceeEeeehh
Confidence 9976543 457777765
No 107
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.73 E-value=0.00011 Score=62.46 Aligned_cols=73 Identities=18% Similarity=0.274 Sum_probs=44.4
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln 368 (405)
..|.+.|+..+++.++|++.|+.||.|..|.+.+. ...|||-|.+.++|++|+..+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----------------------~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----------------------DTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------------------------SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----------------------CCEEEEEECCcchHHHHHHHHH
Confidence 47889999999999999999999999999988431 2368999999999999999887
Q ss_pred CC-----CCCCCceEEEEccc
Q 015515 369 DE-----GNWRSGLRVRLMLR 384 (405)
Q Consensus 369 ~~-----~~~~~glkV~ll~~ 384 (405)
.. .+.+..+.++++..
T Consensus 59 ~~~~~~~~i~~~~~~~~vLeG 79 (105)
T PF08777_consen 59 EANDGKLKIKGKEVTLEVLEG 79 (105)
T ss_dssp HTTTS-B-TTSSSEEEE---H
T ss_pred hccCCceEEcCceEEEEECCC
Confidence 76 12223456666543
No 108
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.73 E-value=4e-05 Score=82.41 Aligned_cols=82 Identities=18% Similarity=0.273 Sum_probs=66.8
Q ss_pred hhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
+.....|||+||+..++++.|...|+.||.|..|+|+.+++-.. |. ..+.|+||-|.+..+|++|+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeE------k~--------r~r~cgfvafmnR~D~era~ 236 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEE------KR--------RERNCGFVAFMNRADAERAL 236 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhh------hc--------cccccceeeehhhhhHHHHH
Confidence 34557899999999999999999999999999999999875221 11 12679999999999999999
Q ss_pred HHHcCCCCCCCceEEE
Q 015515 365 AELNDEGNWRSGLRVR 380 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ 380 (405)
++|++....+..||+.
T Consensus 237 k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 237 KELQGIIVMEYEMKLG 252 (877)
T ss_pred HHhcceeeeeeeeeec
Confidence 9999987665555443
No 109
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.68 E-value=2.3e-05 Score=82.20 Aligned_cols=82 Identities=27% Similarity=0.283 Sum_probs=69.9
Q ss_pred hhhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 015515 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (405)
Q Consensus 283 ~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (405)
.++.+.||||+--+.-..+.-+|++||+.+|+|..|+++.|+.+.+ .||.|||||.+.+....
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~r-----------------skgi~Yvef~D~~sVp~ 236 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRR-----------------SKGIAYVEFCDEQSVPL 236 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchh-----------------hcceeEEEEecccchhh
Confidence 3567889999999999999999999999999999999998876543 28999999999999988
Q ss_pred HHHHHcCCCCCCCceEEEEc
Q 015515 363 AIAELNDEGNWRSGLRVRLM 382 (405)
Q Consensus 363 Av~~ln~~~~~~~glkV~ll 382 (405)
|| .|+|..+.+.-|.|.+.
T Consensus 237 ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 237 AI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred Hh-hhcCCcccCceeEeccc
Confidence 88 58888887776666553
No 110
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.66 E-value=0.00015 Score=75.34 Aligned_cols=75 Identities=21% Similarity=0.227 Sum_probs=53.5
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
..-|-+.+||+.+|+++|.+||+-|+ |+++.+.+ .+++ ..|-|||||+++|++++|++.-
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr-----------------~sGeA~Ve~~seedv~~Alkkd 69 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGR-----------------PSGEAYVEFTSEEDVEKALKKD 69 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCC-----------------cCcceEEEeechHHHHHHHHhh
Confidence 34677899999999999999999985 66655532 2221 2678999999999999999864
Q ss_pred cCCCCCCCceEEEEcc
Q 015515 368 NDEGNWRSGLRVRLML 383 (405)
Q Consensus 368 n~~~~~~~glkV~ll~ 383 (405)
.. .+..+=|-|--+.
T Consensus 70 R~-~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 70 RE-SMGHRYIEVFTAG 84 (510)
T ss_pred HH-HhCCceEEEEccC
Confidence 33 2333345554443
No 111
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.59 E-value=0.00031 Score=71.75 Aligned_cols=74 Identities=22% Similarity=0.325 Sum_probs=64.8
Q ss_pred eeEEeeCCC-ccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 289 RIVVAENLP-EDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 289 rtVyV~nLP-~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
..|.|.||. +.+|.+-|--+|+.||.|.+|.|++.+ |..|+|.|.+...|+-|+..|
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----------------------kd~ALIQmsd~~qAqLA~~hL 355 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----------------------KDNALIQMSDGQQAQLAMEHL 355 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----------------------CcceeeeecchhHHHHHHHHh
Confidence 567788886 568999999999999999999997542 567999999999999999999
Q ss_pred cCCCCCCCceEEEEccc
Q 015515 368 NDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 368 n~~~~~~~glkV~ll~~ 384 (405)
++.++|++.|||.+..-
T Consensus 356 ~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 356 EGHKLYGKKLRVTLSKH 372 (492)
T ss_pred hcceecCceEEEeeccC
Confidence 99999999888887653
No 112
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.53 E-value=0.00022 Score=53.22 Aligned_cols=52 Identities=21% Similarity=0.406 Sum_probs=42.3
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
++|.|.|++.+.. +.+.+.|+.||+|..+.+- . ...+.||+|+++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~--~---------------------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP--E---------------------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC--C---------------------CCcEEEEEECCHHHHHhhC
Confidence 6899999987665 5566689999999999872 0 1458999999999999995
No 113
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.47 E-value=0.00026 Score=73.64 Aligned_cols=74 Identities=23% Similarity=0.308 Sum_probs=51.8
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeE-EEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~-Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
..-.|-+++||+.+|+++|.+||+..--|.. |.+..+ .|. + ..|-|||.|++.|.|++|+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d----------~rg-R-------~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD----------QRG-R-------PTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc----------CCC-C-------cccceEEEecCHHHHHHHHH
Confidence 3457889999999999999999998644433 333212 121 1 15779999999999999998
Q ss_pred HHcCCCCCCCceEE
Q 015515 366 ELNDEGNWRSGLRV 379 (405)
Q Consensus 366 ~ln~~~~~~~glkV 379 (405)
.-+. .++.+.|-|
T Consensus 164 rhre-~iGhRYIEv 176 (510)
T KOG4211|consen 164 RHRE-NIGHRYIEV 176 (510)
T ss_pred HHHH-hhccceEEe
Confidence 6443 344444444
No 114
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.45 E-value=0.00021 Score=71.88 Aligned_cols=91 Identities=20% Similarity=0.221 Sum_probs=69.2
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
...||||.+|+..+|++.|.++|.+||.|+. ++.+++..+.. ++-+ +.-..|+-|.|.|++.-.|+.|+..
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikr-----nK~t~kPki~~---y~dk-eT~~~KGeatvS~~D~~~akaai~~ 135 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKR-----NKRTGKPKIKI---YTDK-ETGAPKGEATVSYEDPPAAKAAIEW 135 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceecc-----CCCCCCcchhc---cccc-cccCcCCceeeeecChhhhhhhhhh
Confidence 4569999999999999999999999998642 33332211111 1111 2224589999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~ 386 (405)
++...+.++.|+|.++..+.
T Consensus 136 ~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 136 FAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred hccccccCCCchhhhhhhcc
Confidence 99999999999999887654
No 115
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.44 E-value=0.00014 Score=70.16 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=64.8
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
++-.||.+.|--++|.+-|.+.|++|=.....++++++-+ +|+ |||+||-|.+.+++..|+++
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRT----------gKS-------kgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRT----------GKS-------KGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccc----------ccc-------ccceeeeecCHHHHHHHHHh
Confidence 4568999999999999999999999988877888777533 332 89999999999999999999
Q ss_pred HcCCCCCCCceEEE
Q 015515 367 LNDEGNWRSGLRVR 380 (405)
Q Consensus 367 ln~~~~~~~glkV~ 380 (405)
|++...+-+-|++|
T Consensus 252 m~gkyVgsrpiklR 265 (290)
T KOG0226|consen 252 MNGKYVGSRPIKLR 265 (290)
T ss_pred hcccccccchhHhh
Confidence 99987766656655
No 116
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.36 E-value=0.00092 Score=56.18 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=52.8
Q ss_pred eeEEeeCCCccccHHHHHHHHhh--cCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSA--VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~--fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
.||.|+|||-..|.+.|.+++.. .|....+-+..| .+. -.|.|||||.|.+.+.|.+..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiD----------f~~-------~~N~GYAFVNf~~~~~~~~F~~~ 64 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPID----------FKN-------KCNLGYAFVNFTSPQAAIRFYKA 64 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeee----------ccC-------CCceEEEEEEcCCHHHHHHHHHH
Confidence 58999999999999998888865 356666655323 222 13689999999999999999999
Q ss_pred HcCCCC
Q 015515 367 LNDEGN 372 (405)
Q Consensus 367 ln~~~~ 372 (405)
+++..+
T Consensus 65 f~g~~w 70 (97)
T PF04059_consen 65 FNGKKW 70 (97)
T ss_pred HcCCcc
Confidence 998764
No 117
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.31 E-value=0.00013 Score=69.45 Aligned_cols=70 Identities=23% Similarity=0.281 Sum_probs=60.0
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...+.++|.++...+++++|.+.|..+|.+..+.+. .+++||+|++.++|.+|+.
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------------------------~~~~~v~Fs~~~da~ra~~ 151 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------------------------RNFAFVEFSEQEDAKRALE 151 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------------------------ccccceeehhhhhhhhcch
Confidence 345678899999999999999999999998555441 5679999999999999999
Q ss_pred HHcCCCCCCCceEEE
Q 015515 366 ELNDEGNWRSGLRVR 380 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ 380 (405)
.|++..+.++.|.|.
T Consensus 152 ~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 152 KLDGKKLNGRRISVE 166 (216)
T ss_pred hccchhhcCceeeec
Confidence 999998888777774
No 118
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.26 E-value=0.00029 Score=67.09 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=50.8
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln 368 (405)
.||||-||-.++|+++|+.+|+.|--...++|+- | . +...|||+|++.+.|..|+..|.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~------------~----~-----g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRA------------R----G-----GMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec------------C----C-----CcceEeecHHHHHHHHHHHHHhh
Confidence 4899999999999999999999998766666631 1 0 14579999999999999999887
Q ss_pred CCC
Q 015515 369 DEG 371 (405)
Q Consensus 369 ~~~ 371 (405)
+..
T Consensus 270 g~~ 272 (284)
T KOG1457|consen 270 GNL 272 (284)
T ss_pred cce
Confidence 653
No 119
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.18 E-value=0.0013 Score=66.03 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=60.0
Q ss_pred hcceeEEeeCC--Ccc--cc-------HHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEe
Q 015515 286 LQSRIVVAENL--PED--HC-------HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEY 354 (405)
Q Consensus 286 ~~~rtVyV~nL--P~d--~t-------~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEF 354 (405)
...+||+++|+ |++ .+ .++|++--++||.|.+|.+. ++ .+.|.+-|.|
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d~--------------------hPdGvvtV~f 321 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-DR--------------------HPDGVVTVSF 321 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-cc--------------------CCCceeEEEe
Confidence 34679999998 222 22 34566677899999999885 32 1378899999
Q ss_pred CCHHHHHHHHHHHcCCCCCCCceEEEEccc
Q 015515 355 ESVELAEKAIAELNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 355 es~E~A~kAv~~ln~~~~~~~glkV~ll~~ 384 (405)
.+.++|..||+.|+|..+.++.|...+...
T Consensus 322 ~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 322 RNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred CChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 999999999999999988887777666554
No 120
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0011 Score=70.23 Aligned_cols=79 Identities=28% Similarity=0.329 Sum_probs=58.4
Q ss_pred cceeEEeeCCCcc--ccHH----HHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHH
Q 015515 287 QSRIVVAENLPED--HCHQ----NLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (405)
Q Consensus 287 ~~rtVyV~nLP~d--~t~e----~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A 360 (405)
-...|+|.|+|.- ...+ -|.++|+++|+|.++.+--+. .. +.|||.|+||++..+|
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e----------~g--------gtkG~lf~E~~~~~~A 118 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE----------EG--------GTKGYLFVEYASMRDA 118 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc----------cC--------CeeeEEEEEecChhhH
Confidence 3457888999842 2233 467899999999888773221 11 1389999999999999
Q ss_pred HHHHHHHcCCCCCCC-ceEEEEcc
Q 015515 361 EKAIAELNDEGNWRS-GLRVRLML 383 (405)
Q Consensus 361 ~kAv~~ln~~~~~~~-glkV~ll~ 383 (405)
++|++.|||..+..+ .+.|+++.
T Consensus 119 ~~aVK~l~G~~ldknHtf~v~~f~ 142 (698)
T KOG2314|consen 119 KKAVKSLNGKRLDKNHTFFVRLFK 142 (698)
T ss_pred HHHHHhcccceecccceEEeehhh
Confidence 999999999887665 46666654
No 121
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.04 E-value=0.0013 Score=65.82 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=59.6
Q ss_pred hcceeEEeeCCCccccHHH------HHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHH
Q 015515 286 LQSRIVVAENLPEDHCHQN------LMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVEL 359 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~------L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~ 359 (405)
++...|||-+|+..+-.|+ -.++|.+||.|..|.+-+.. ++.+-. ...--+||+|.+.||
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt------~s~nst--------~~h~gvYITy~~ked 177 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKT------SSLNST--------ASHAGVYITYSTKED 177 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccc------cccccc--------cccceEEEEecchHH
Confidence 4566899999987765554 25899999999999883211 111110 011235999999999
Q ss_pred HHHHHHHHcCCCCCCCceEEEE
Q 015515 360 AEKAIAELNDEGNWRSGLRVRL 381 (405)
Q Consensus 360 A~kAv~~ln~~~~~~~glkV~l 381 (405)
|.+||.+.++....++-||..+
T Consensus 178 AarcIa~vDgs~~DGr~lkatY 199 (480)
T COG5175 178 AARCIAEVDGSLLDGRVLKATY 199 (480)
T ss_pred HHHHHHHhccccccCceEeeec
Confidence 9999999999988888787665
No 122
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.99 E-value=0.00085 Score=66.61 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=59.3
Q ss_pred eeEE-eeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 289 RIVV-AENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 289 rtVy-V~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
.++| |.+|+.+++.++|.+.|..+|.|..||+.....++. -+|||||+|.+.+++.+|+..
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~-----------------~kg~a~~~~~~~~~~~~~~~~- 246 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGD-----------------SKGFAYVDFSAGNSKKLALND- 246 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccc-----------------hhhhhhhhhhhchhHHHHhhc-
Confidence 4556 999999999999999999999999999864443222 289999999999999888776
Q ss_pred cCCCCCCCceEEEEccc
Q 015515 368 NDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 368 n~~~~~~~glkV~ll~~ 384 (405)
....+.+.-++|..-..
T Consensus 247 ~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 247 QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ccCcccCcccccccCCC
Confidence 55554444455554433
No 123
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.81 E-value=0.0026 Score=68.75 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=60.5
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCe-eEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V-~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
+.|-+.|+|++++.+||.+||..|-.+ .+|++++.. +|+ ..|-|-|-|++.|+|..|+..|
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd---------------~G~---pTGe~mvAfes~~eAr~A~~dl 929 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRND---------------DGV---PTGECMVAFESQEEARRASMDL 929 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecC---------------CCC---cccceeEeecCHHHHHhhhhcc
Confidence 467789999999999999999999655 566665421 121 2577999999999999999999
Q ss_pred cCCCCCCCceEEEEc
Q 015515 368 NDEGNWRSGLRVRLM 382 (405)
Q Consensus 368 n~~~~~~~glkV~ll 382 (405)
++..+.-+.++|+++
T Consensus 930 ~~~~i~nr~V~l~ii 944 (944)
T KOG4307|consen 930 DGQKIRNRVVSLRII 944 (944)
T ss_pred ccCcccceeEEEEeC
Confidence 999887777777753
No 124
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.68 E-value=0.0014 Score=69.43 Aligned_cols=80 Identities=23% Similarity=0.309 Sum_probs=68.7
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
....+||++||...++++++++.+.||.+...+++.+..++ -+|||||.||.+.....+|++.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g-----------------~skg~af~ey~dpsvtd~A~ag 350 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG-----------------NSKGFAFCEYCDPSVTDQAIAG 350 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc-----------------cccceeeeeeeCCcchhhhhcc
Confidence 34579999999999999999999999999999998765432 1499999999999999999999
Q ss_pred HcCCCCCCCceEEEEcc
Q 015515 367 LNDEGNWRSGLRVRLML 383 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~ 383 (405)
||+..+++..|-|..+.
T Consensus 351 LnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 351 LNGMQLGDKKLVVQRAI 367 (500)
T ss_pred cchhhhcCceeEeehhh
Confidence 99999888877776544
No 125
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.56 E-value=0.013 Score=54.56 Aligned_cols=64 Identities=25% Similarity=0.222 Sum_probs=55.1
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln 368 (405)
-.|+|.+||...++++|++.+.+-|.|-...+.+ .|++.|+|-..|+.+-||+.|.
T Consensus 116 ~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r------------------------Dg~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 116 YRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR------------------------DGVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec------------------------ccceeeeeeehhhHHHHHHhhc
Confidence 4799999999999999999999999988777743 3578999999999999999999
Q ss_pred CCCCCCCc
Q 015515 369 DEGNWRSG 376 (405)
Q Consensus 369 ~~~~~~~g 376 (405)
+....-.|
T Consensus 172 ~~~~~seG 179 (241)
T KOG0105|consen 172 DQKFRSEG 179 (241)
T ss_pred cccccCcC
Confidence 87655444
No 126
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.009 Score=62.83 Aligned_cols=69 Identities=26% Similarity=0.282 Sum_probs=50.7
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCcc---EEEEEeCCHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKL---HAFVEYESVELAEK 362 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG---~aFVEFes~E~A~k 362 (405)
..++.|||++||.+++++.|...|..||.+..= . ++. ...++ .+-.|| |+|+.|+++.....
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~Vd-W--P~k-----------~~~~~-~~ppkGs~~YvflvFe~E~sV~~ 321 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVD-W--PGK-----------ANSRG-RAPPKGSYGYVFLVFEDERSVQS 321 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEee-c--CCC-----------ccccc-cCCCCCcccEEEEEecchHHHHH
Confidence 467899999999999999999999999986532 2 211 01111 122366 99999999998888
Q ss_pred HHHHHcC
Q 015515 363 AIAELND 369 (405)
Q Consensus 363 Av~~ln~ 369 (405)
.+.++..
T Consensus 322 Ll~aC~~ 328 (520)
T KOG0129|consen 322 LLSACSE 328 (520)
T ss_pred HHHHHhh
Confidence 8777654
No 127
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.07 E-value=0.0035 Score=60.82 Aligned_cols=83 Identities=20% Similarity=0.206 Sum_probs=58.9
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
.-.||+++||..+...-|+++|+.||.|-+|.+-....+... ...|.+...+..| --+.|||.+...|+++...|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~--~r~~~~~n~~~~y---~EGWvEF~~KrvAK~iAe~L 148 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRA--ARKRKGGNYKKLY---SEGWVEFISKRVAKRIAELL 148 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHH--HHhhcCCCccccc---hhHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999999988543222000 0011111111111 12689999999999999999
Q ss_pred cCCCCCCC
Q 015515 368 NDEGNWRS 375 (405)
Q Consensus 368 n~~~~~~~ 375 (405)
|+..+++.
T Consensus 149 nn~~Iggk 156 (278)
T KOG3152|consen 149 NNTPIGGK 156 (278)
T ss_pred CCCccCCC
Confidence 99887764
No 128
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.05 E-value=0.018 Score=48.68 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=45.9
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..+.|.|=|||.. ....|.+.|++||.|....-......+.. ....+...+...|+|++..+|.+||.+
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~----------~~~~~~~~NWi~I~Y~~~~~A~rAL~~ 73 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGIN----------PYPIPSGGNWIHITYDNPLSAQRALQK 73 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG--------------------E-CCTTEEEEEESSHHHHHHHHTT
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccc----------cccCCCCCCEEEEECCCHHHHHHHHHh
Confidence 4567889999988 45667788999999977752211100000 001223367899999999999999985
Q ss_pred HcCCCCCC
Q 015515 367 LNDEGNWR 374 (405)
Q Consensus 367 ln~~~~~~ 374 (405)
|+..+.+
T Consensus 74 -NG~i~~g 80 (100)
T PF05172_consen 74 -NGTIFSG 80 (100)
T ss_dssp -TTEEETT
T ss_pred -CCeEEcC
Confidence 6665544
No 129
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.92 E-value=0.035 Score=49.84 Aligned_cols=77 Identities=17% Similarity=0.277 Sum_probs=55.3
Q ss_pred cceeEEeeCCCccc----cHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 015515 287 QSRIVVAENLPEDH----CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (405)
Q Consensus 287 ~~rtVyV~nLP~d~----t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (405)
.-.||+|+.|...+ +...+....+.||.|.+|.++ ++-.|.|.|++..+|-+
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c------------------------GrqsavVvF~d~~SAC~ 140 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC------------------------GRQSAVVVFKDITSACK 140 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec------------------------CCceEEEEehhhHHHHH
Confidence 44689998776654 334566677899999999985 15579999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEcccCCCC
Q 015515 363 AIAELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 363 Av~~ln~~~~~~~glkV~ll~~~~~K 388 (405)
|+.++....- +.-+++...-+.|.|
T Consensus 141 Av~Af~s~~p-gtm~qCsWqqrFMsk 165 (166)
T PF15023_consen 141 AVSAFQSRAP-GTMFQCSWQQRFMSK 165 (166)
T ss_pred HHHhhcCCCC-CceEEeecccccccC
Confidence 9999987432 344555544444443
No 130
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.86 E-value=0.021 Score=60.59 Aligned_cols=63 Identities=16% Similarity=0.236 Sum_probs=46.0
Q ss_pred HHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEE
Q 015515 303 QNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRV 379 (405)
Q Consensus 303 e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~glkV 379 (405)
|+++.-+++||.|..|.+-++-. ++-...+-|.+||||++.+++++|.++|+|..+.++.+..
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~--------------~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvt 486 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYP--------------DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVA 486 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCC--------------CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEE
Confidence 45555677899999999865510 0111123688999999999999999999999887664433
No 131
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.82 E-value=0.0056 Score=62.84 Aligned_cols=53 Identities=26% Similarity=0.300 Sum_probs=47.2
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (405)
.++.|.+++||+++++++|.+++..||+|..+.+++- |.-||+||++++.|..
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG-----------------------knQAflem~d~~sAvt 79 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG-----------------------KNQAFLEMADEESAVT 79 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeecc-----------------------chhhhhhhcchhhhhh
Confidence 5788999999999999999999999999999988531 4579999999999876
No 132
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.69 E-value=0.041 Score=56.11 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=61.3
Q ss_pred ceeEEeeCCCc-cccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 288 SRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 288 ~rtVyV~nLP~-d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
...+.|.+|.. .++-+.|-.+|-.||.|++|.+++.+ .|.|.||+.+..+.++|+..
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----------------------~gtamVemgd~~aver~v~h 344 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----------------------PGTAMVEMGDAYAVERAVTH 344 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----------------------cceeEEEcCcHHHHHHHHHH
Confidence 45677888875 46778899999999999999987432 57899999999999999999
Q ss_pred HcCCCCCCCceEEEEcc
Q 015515 367 LNDEGNWRSGLRVRLML 383 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~ 383 (405)
||+..+.+..|.|.+..
T Consensus 345 Lnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 345 LNNIPLFGGKLNVCVSK 361 (494)
T ss_pred hccCccccceEEEeecc
Confidence 99998877777776543
No 133
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.58 E-value=0.007 Score=58.72 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=45.1
Q ss_pred HHHHHHHHh-hcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEE
Q 015515 302 HQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVR 380 (405)
Q Consensus 302 ~e~L~~~Fs-~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~glkV~ 380 (405)
.|+|-..|+ +||+|+.+.++... . .. -.|.+||.|..+|+|++|+..||+.-+.++.|...
T Consensus 82 yEd~f~E~~~kygEiee~~Vc~Nl-----------~-----~h--l~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae 143 (260)
T KOG2202|consen 82 YEDVFTELEDKYGEIEELNVCDNL-----------G-----DH--LVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAE 143 (260)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccc-----------c-----hh--hhhhhhhhcccHHHHHHHHHHHcCccccCCcceee
Confidence 344444455 89999999886321 1 11 17889999999999999999999987666666544
Q ss_pred E
Q 015515 381 L 381 (405)
Q Consensus 381 l 381 (405)
+
T Consensus 144 ~ 144 (260)
T KOG2202|consen 144 L 144 (260)
T ss_pred e
Confidence 4
No 134
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=95.57 E-value=0.0082 Score=35.23 Aligned_cols=16 Identities=56% Similarity=0.916 Sum_probs=12.5
Q ss_pred CccccCCCCCCCCCCC
Q 015515 36 SFSRLNAKAPEFVPTR 51 (405)
Q Consensus 36 ~~~~~~~~ap~~~p~~ 51 (405)
..|+||..|+||||+.
T Consensus 2 ~~s~LNp~A~eFvP~~ 17 (18)
T PF07145_consen 2 KSSKLNPNAPEFVPSS 17 (18)
T ss_dssp -SSSSSTTSSSS-TTT
T ss_pred cccccCCCCccccCCC
Confidence 4689999999999974
No 135
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.23 E-value=0.042 Score=49.44 Aligned_cols=60 Identities=22% Similarity=0.219 Sum_probs=44.1
Q ss_pred HHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEc
Q 015515 303 QNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (405)
Q Consensus 303 e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~glkV~ll 382 (405)
.+|.+.|+.||+|.-||+.. +.-+|+|.+-+.|.+|+. |++....+..|+|++.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~-------------------------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG-------------------------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLK 104 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET-------------------------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-
T ss_pred HHHHHHHHhCCceEEEEEeC-------------------------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeC
Confidence 47888999999999999852 245999999999998877 7888888888999988
Q ss_pred ccCCCC
Q 015515 383 LRRGSK 388 (405)
Q Consensus 383 ~~~~~K 388 (405)
..-+.+
T Consensus 105 tpdW~~ 110 (146)
T PF08952_consen 105 TPDWLK 110 (146)
T ss_dssp ------
T ss_pred CccHHH
Confidence 765544
No 136
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.05 E-value=1.4 Score=48.60 Aligned_cols=80 Identities=14% Similarity=0.001 Sum_probs=60.8
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeE-EEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~-Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
...|||.+||..+++..+.++|++--.|++ |.|.+- |.+.+ ++-|||+|..++++.+|+..
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-------P~~~~-----------~~~afv~F~~~~a~~~a~~~ 495 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-------PTDLL-----------RPAAFVAFIHPTAPLTASSV 495 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccC-------Ccccc-----------cchhhheeccccccchhhhc
Confidence 357999999999999999999998777766 666432 11111 56799999999999999876
Q ss_pred HcCCCCCCCceEEEEcccC
Q 015515 367 LNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~ 385 (405)
-.....+.+-|+|+-+..+
T Consensus 496 ~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 496 KTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred ccccccCceEEEeechhhH
Confidence 6666666677888866544
No 137
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.93 E-value=0.015 Score=64.32 Aligned_cols=79 Identities=22% Similarity=0.254 Sum_probs=64.3
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
...|+|.|.|...|.++|+.+|+++|.++++++.. .|.+|. ||-|||.|.++.+|.+++..+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt-----------~r~gkp-------kg~a~v~y~~ea~~s~~~~s~ 797 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVT-----------VRAGKP-------KGKARVDYNTEADASRKVASV 797 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhh-----------hhcccc-------ccceeccCCCcchhhhhcccc
Confidence 45799999999999999999999999999998743 233443 788999999999999999887
Q ss_pred cCCCCCCCceEEEEccc
Q 015515 368 NDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 368 n~~~~~~~glkV~ll~~ 384 (405)
....+..+++.|.+.+.
T Consensus 798 d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 798 DVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhhhcCccccccCC
Confidence 76666566777777443
No 138
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.92 E-value=0.061 Score=56.79 Aligned_cols=62 Identities=23% Similarity=0.194 Sum_probs=52.7
Q ss_pred ceeEEeeCCCccccHHHHHHHHh-hcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs-~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
.|||||++||.-++-++|-.+|+ -||-|..|-|..|.. .|. .||.+=|+|++..+-.+||..
T Consensus 370 rrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k-----------~KY------PkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 370 RRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPK-----------LKY------PKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcc-----------cCC------CCCcceeeecccHHHHHHHhh
Confidence 57999999999999999999999 799999999955421 121 389999999999999999873
No 139
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.80 E-value=0.12 Score=39.98 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=42.9
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhc---CCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAV---GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~f---G~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
...|+|.|+. +++-++|+.+|..| .....|..+-| .+|-|.|.+.+.|.+|+
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD------------------------tScNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD------------------------TSCNVVFKDEETAARAL 59 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC------------------------CcEEEEECCHHHHHHHH
Confidence 4589999984 57888999999999 12456766532 36899999999999998
Q ss_pred HHH
Q 015515 365 AEL 367 (405)
Q Consensus 365 ~~l 367 (405)
..|
T Consensus 60 ~~L 62 (62)
T PF10309_consen 60 VAL 62 (62)
T ss_pred HcC
Confidence 764
No 140
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.77 E-value=0.014 Score=58.55 Aligned_cols=82 Identities=23% Similarity=0.363 Sum_probs=57.2
Q ss_pred hcceeEEeeCCCccccHHH-HH--HHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQN-LM--KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~-L~--~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (405)
++..-+||-+|+.+.-.+. |+ +.|.+||.|..|.+.++..+ ....+ +--.+||+|+..|+|..
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~----------~s~~~----~~~s~yITy~~~eda~r 140 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSS----------SSSSG----GTCSVYITYEEEEDADR 140 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCccc----------ccCCC----CCCcccccccchHhhhh
Confidence 5567889999987665444 33 68999999999998654310 01111 13458999999999999
Q ss_pred HHHHHcCCCCCCCceEEEE
Q 015515 363 AIAELNDEGNWRSGLRVRL 381 (405)
Q Consensus 363 Av~~ln~~~~~~~glkV~l 381 (405)
||....+..+.++.|+..+
T Consensus 141 ci~~v~g~~~dg~~lka~~ 159 (327)
T KOG2068|consen 141 CIDDVDGFVDDGRALKASL 159 (327)
T ss_pred HHHHhhhHHhhhhhhHHhh
Confidence 9998887766555544433
No 141
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=94.04 E-value=0.034 Score=62.71 Aligned_cols=52 Identities=25% Similarity=0.470 Sum_probs=47.2
Q ss_pred hcCCCCCceecccccchhhhHhhhcCHHHHHHHhhc-cccceeeccccccccC
Q 015515 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRK-SSKLVVSEDGKKIKRQ 275 (405)
Q Consensus 224 i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~-S~~LeVsedg~kVRR~ 275 (405)
+.-+.+|||-|.++|..-.|--+..+.+.|..||.+ |++|+|+.||.|||.+
T Consensus 471 v~pDaeGWVYLNLL~NmAQLHiiNVTPdFVRsAV~E~StKfQLSpDGrKIRWR 523 (989)
T PF09421_consen 471 VHPDAEGWVYLNLLCNMAQLHIINVTPDFVRSAVSEKSTKFQLSPDGRKIRWR 523 (989)
T ss_pred cCcccccceehHHHHHHHHHHhhccCHHHHHHHHHhcccceeeCCCCCeeeec
Confidence 345889999999999999999999999999999875 8899999999999976
No 142
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.94 E-value=0.077 Score=52.66 Aligned_cols=64 Identities=20% Similarity=0.187 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEE
Q 015515 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (405)
Q Consensus 302 ~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~glkV~l 381 (405)
++++.+-.++||.|.+|-|..... .|.+ + -.-.||||+..++|.||+-.||+..++++-++..+
T Consensus 300 ede~keEceKyg~V~~viifeip~----~p~d-e-----------avRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPS----QPED-E-----------AVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCC----Cccc-h-----------hheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 456778889999999887764421 1111 1 12369999999999999999999988776555443
No 143
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=93.87 E-value=0.15 Score=52.23 Aligned_cols=60 Identities=25% Similarity=0.294 Sum_probs=43.4
Q ss_pred eeEEeeCCCccccHHHHHHHHhh-----cCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSA-----VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~-----fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (405)
-.|-.+|||+|++..++.+||.. -|.+.-+.+.++. |+ ..|-|||.|+.+++|++|
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd----------------gr---pTGdAFvlfa~ee~aq~a 222 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD----------------GR---PTGDAFVLFACEEDAQFA 222 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC----------------CC---cccceEEEecCHHHHHHH
Confidence 45667899999999999999973 2333333443321 11 157799999999999999
Q ss_pred HHHH
Q 015515 364 IAEL 367 (405)
Q Consensus 364 v~~l 367 (405)
+..-
T Consensus 223 L~kh 226 (508)
T KOG1365|consen 223 LRKH 226 (508)
T ss_pred HHHH
Confidence 9753
No 144
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.81 E-value=0.017 Score=64.32 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=64.3
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...+|||++||..++++.+|+..|..+|.|..|+|-.+.. +. ..-|+||.|.+.+.+-+|..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~------------~~------esa~~f~~~~n~dmtp~ak~ 431 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI------------KT------ESAYAFVSLLNTDMTPSAKF 431 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC------------Cc------ccchhhhhhhccccCcccch
Confidence 4578999999999999999999999999999999965531 11 13479999999999999999
Q ss_pred HHcCCCCCCCceEEEEc
Q 015515 366 ELNDEGNWRSGLRVRLM 382 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll 382 (405)
++.+..+....+++.+-
T Consensus 432 e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 432 EESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhcCCccccCccccccc
Confidence 99988776555555443
No 145
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.73 E-value=0.084 Score=51.45 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=54.5
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln 368 (405)
..|||.||...++.|.|+.-|+.||.|+...++-|. |..- -+-.+|+|...-.|.+|+..++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~----------r~k~--------t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD----------RGKP--------TREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc----------cccc--------cccchhhhhcchhHHHHHHHhc
Confidence 689999999999999999999999999887775442 2111 2335999999999999999997
Q ss_pred CCCCCC
Q 015515 369 DEGNWR 374 (405)
Q Consensus 369 ~~~~~~ 374 (405)
...+..
T Consensus 94 ~~g~~~ 99 (275)
T KOG0115|consen 94 EGGFGG 99 (275)
T ss_pred cCcccc
Confidence 655443
No 146
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=93.51 E-value=0.23 Score=54.77 Aligned_cols=16 Identities=13% Similarity=0.273 Sum_probs=9.4
Q ss_pred CCCChHHHHHHhhccc
Q 015515 191 GGLNDESIQKVLNQVE 206 (405)
Q Consensus 191 ~~~~~e~~~kI~kQvE 206 (405)
..+.+...++|.+++.
T Consensus 387 tvf~~~~De~Il~~lD 402 (830)
T KOG1923|consen 387 TVFHELNDEKILEALD 402 (830)
T ss_pred chhhhhhHHHHHHhhh
Confidence 4455566666766554
No 147
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.01 E-value=0.12 Score=57.82 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=64.0
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...+.++|++|..++....|...|..||.|..|.+.+- ..||||.|++...|+.|+.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----------------------q~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----------------------QPYAYIQYESPPAAQAATH 509 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----------------------CcceeeecccCccchhhHH
Confidence 34568999999999999999999999999999887421 4589999999999999999
Q ss_pred HHcCCCCCCC--ceEEEEccc
Q 015515 366 ELNDEGNWRS--GLRVRLMLR 384 (405)
Q Consensus 366 ~ln~~~~~~~--glkV~ll~~ 384 (405)
.|.+..+++- .|+|.|+..
T Consensus 510 ~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred HHhcCcCCCCCcccccccccC
Confidence 9999887753 477777654
No 148
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.95 E-value=0.32 Score=39.97 Aligned_cols=65 Identities=20% Similarity=0.337 Sum_probs=46.5
Q ss_pred eEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 015515 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~ 369 (405)
-||--.||.+....+|.++|+.||.|.--.| +..+|||.....+.|..|+..++.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~VsWi-------------------------~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYVSWI-------------------------NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEEEEE-------------------------CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEEEEE-------------------------cCCcEEEEeecHHHHHHHHHHhcc
Confidence 4555559999999999999999999865555 144799999999999999998864
Q ss_pred CCCCCCceEEEEcc
Q 015515 370 EGNWRSGLRVRLML 383 (405)
Q Consensus 370 ~~~~~~glkV~ll~ 383 (405)
....+|.-..
T Consensus 65 ----~~~y~i~tY~ 74 (87)
T PF08675_consen 65 ----NSSYRIQTYA 74 (87)
T ss_dssp -----SSSEEEEHH
T ss_pred ----CCceEEEEHH
Confidence 2356666443
No 149
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.70 E-value=0.13 Score=52.15 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=53.8
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCC--eeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGS--VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~--V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
-.+||+||-|++|.++|.+.....|- +..+.+...++.| ..||||+|...+..+.++.++.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NG-----------------QSKG~AL~~~~SdAa~Kq~Mei 143 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNG-----------------QSKGYALLVLNSDAAVKQTMEI 143 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCC-----------------cccceEEEEecchHHHHHHHHh
Confidence 47999999999999999888877663 4444443333222 2399999999999999999998
Q ss_pred HcCCCCCCCc
Q 015515 367 LNDEGNWRSG 376 (405)
Q Consensus 367 ln~~~~~~~g 376 (405)
|-...+.+..
T Consensus 144 LP~k~iHGQ~ 153 (498)
T KOG4849|consen 144 LPTKTIHGQS 153 (498)
T ss_pred cccceecCCC
Confidence 8777776654
No 150
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.64 E-value=0.012 Score=65.10 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=53.4
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
+..++||+||+..+++++|...|+.+|.+..|++..-.+. .. .+|.|||+|...++|.+||..
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~---------------~~--~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNE---------------KR--FRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhc---------------cc--cccceeeEeecCCchhhhhhh
Confidence 4568999999999999999999999999998888522211 11 289999999999999999985
Q ss_pred HcC
Q 015515 367 LND 369 (405)
Q Consensus 367 ln~ 369 (405)
...
T Consensus 729 ~d~ 731 (881)
T KOG0128|consen 729 RDS 731 (881)
T ss_pred hhh
Confidence 443
No 151
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=92.50 E-value=0.38 Score=49.29 Aligned_cols=67 Identities=28% Similarity=0.326 Sum_probs=52.9
Q ss_pred CCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCC
Q 015515 295 NLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWR 374 (405)
Q Consensus 295 nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~ 374 (405)
|-=+.+|.+-|-.+--..|+|.+|.|.+. +-.-|.|||++.+.|++|-..||+..+..
T Consensus 129 Np~YpItvDVly~Icnp~GkVlRIvIfkk----------------------ngVQAmVEFdsv~~AqrAk~alNGADIYs 186 (494)
T KOG1456|consen 129 NPQYPITVDVLYTICNPQGKVLRIVIFKK----------------------NGVQAMVEFDSVEVAQRAKAALNGADIYS 186 (494)
T ss_pred cCccccchhhhhhhcCCCCceEEEEEEec----------------------cceeeEEeechhHHHHHHHhhcccccccc
Confidence 33367888999999999999999988632 13469999999999999999999987664
Q ss_pred C--ceEEEEcc
Q 015515 375 S--GLRVRLML 383 (405)
Q Consensus 375 ~--glkV~ll~ 383 (405)
. .|||.++.
T Consensus 187 GCCTLKIeyAk 197 (494)
T KOG1456|consen 187 GCCTLKIEYAK 197 (494)
T ss_pred cceeEEEEecC
Confidence 3 56766654
No 152
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.08 E-value=0.12 Score=55.48 Aligned_cols=72 Identities=24% Similarity=0.372 Sum_probs=56.8
Q ss_pred cceeEEeeCCCccccHHHHHHHHh-hcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs-~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
-+..|||.||=.-+|+-.|++++. .+|.|+..+| |+. |..|||.|.+.++|-.-..
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkI---------------------KShCyV~yss~eEA~atr~ 499 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKI---------------------KSHCYVSYSSVEEAAATRE 499 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHh---------------------hcceeEecccHHHHHHHHH
Confidence 467899999999999999999998 6788888766 221 6689999999999999999
Q ss_pred HHcCCCCCCC----ceEEEEc
Q 015515 366 ELNDEGNWRS----GLRVRLM 382 (405)
Q Consensus 366 ~ln~~~~~~~----glkV~ll 382 (405)
.|++-. |-. -|.+.+.
T Consensus 500 AlhnV~-WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 500 ALHNVQ-WPPSNPKHLIADFV 519 (718)
T ss_pred HHhccc-cCCCCCceeEeeec
Confidence 999854 532 2555543
No 153
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=91.95 E-value=0.076 Score=56.01 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=4.5
Q ss_pred CCCCCCCccc
Q 015515 155 HHNNNNSHHQ 164 (405)
Q Consensus 155 ~~~~~~~~~~ 164 (405)
.|---|+.-+
T Consensus 595 phrttrsgrk 604 (990)
T KOG1819|consen 595 PHRTTRSGRK 604 (990)
T ss_pred Cccccccccc
Confidence 3444455444
No 154
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=91.59 E-value=0.22 Score=51.10 Aligned_cols=67 Identities=15% Similarity=0.251 Sum_probs=51.0
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCC-eeE--EEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGS-VKT--IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~-V~~--Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
.-+|-.+|||++.+.|+|.+||+.|.. |.. |.|..... | ...|-|||+|.++|+|..|.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q---------------G---rPSGeAFIqm~nae~a~aaa 341 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ---------------G---RPSGEAFIQMRNAERARAAA 341 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC---------------C---CcChhhhhhhhhhHHHHHHH
Confidence 447889999999999999999999864 433 56654321 1 12578999999999999998
Q ss_pred HHHcCCCC
Q 015515 365 AELNDEGN 372 (405)
Q Consensus 365 ~~ln~~~~ 372 (405)
....+...
T Consensus 342 qk~hk~~m 349 (508)
T KOG1365|consen 342 QKCHKKLM 349 (508)
T ss_pred HHHHHhhc
Confidence 87776543
No 155
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.90 E-value=0.14 Score=56.88 Aligned_cols=70 Identities=26% Similarity=0.203 Sum_probs=54.8
Q ss_pred EeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCC
Q 015515 292 VAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEG 371 (405)
Q Consensus 292 yV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~ 371 (405)
++.|.+-..+.-.|-.+|+.||.|.++|++|+ -..|.|+|.+.|.|..|++.|.+..
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----------------------~N~alvs~~s~~sai~a~dAl~gke 358 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----------------------LNMALVSFSSVESAILALDALQGKE 358 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccc-----------------------ccchhhhhHHHHHHHHhhhhhcCCc
Confidence 34455556677789999999999999999765 2468999999999999999999987
Q ss_pred CCCCceEEEEccc
Q 015515 372 NWRSGLRVRLMLR 384 (405)
Q Consensus 372 ~~~~glkV~ll~~ 384 (405)
....|.-++++..
T Consensus 359 vs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 359 VSVTGAPSRVSFA 371 (1007)
T ss_pred ccccCCceeEEec
Confidence 6666654444443
No 156
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=90.52 E-value=0.33 Score=49.99 Aligned_cols=78 Identities=14% Similarity=0.247 Sum_probs=57.3
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln 368 (405)
..|-|.||....|.+.+..+|.-.|+|..++|. +..-...+++. .-.|||-|.+...+.-| ..|.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrly-p~~~d~~~pv~-------------sRtcyVkf~d~~sv~va-QhLt 72 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLY-PNVDDSKIPVI-------------SRTCYVKFLDSQSVTVA-QHLT 72 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhcccccccccc-CCCCCccCcce-------------eeeEEEeccCCcceeHH-hhhc
Confidence 478899999999999999999999999999984 43222222222 33699999999887654 4566
Q ss_pred CCCCCCCceEEEE
Q 015515 369 DEGNWRSGLRVRL 381 (405)
Q Consensus 369 ~~~~~~~glkV~l 381 (405)
+..+.+..|-|.-
T Consensus 73 ntvfvdraliv~p 85 (479)
T KOG4676|consen 73 NTVFVDRALIVRP 85 (479)
T ss_pred cceeeeeeEEEEe
Confidence 6666666666554
No 157
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.66 E-value=2.4 Score=36.46 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=47.7
Q ss_pred eEEeeCCCccccHHHHHHHHhhcC-CeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 015515 290 IVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs~fG-~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln 368 (405)
.+.+-..|+.++.++|..+.+.+- .|..+||+++... ++=-+.+.|.+.++|....+.+|
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-------------------nrymVLikF~~~~~Ad~Fy~~fN 75 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-------------------NRYMVLIKFRDQESADEFYEEFN 75 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-------------------ceEEEEEEECCHHHHHHHHHHhC
Confidence 444455566677778876666654 5788899876531 24468999999999999999999
Q ss_pred CCCCC
Q 015515 369 DEGNW 373 (405)
Q Consensus 369 ~~~~~ 373 (405)
|..+.
T Consensus 76 Gk~Fn 80 (110)
T PF07576_consen 76 GKPFN 80 (110)
T ss_pred CCccC
Confidence 98654
No 158
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=88.14 E-value=0.43 Score=47.54 Aligned_cols=79 Identities=15% Similarity=-0.021 Sum_probs=58.6
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
...++|++++-+.+.++++..+|..+|.+...++..... ....||+++|.|+..+.+..|+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~-----------------~~~sk~~~s~~f~~ks~~~~~l~~ 149 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLED-----------------SLSSKGGLSVHFAGKSQFFAALEE 149 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhcc-----------------ccccccceeeccccHHHHHHHHHh
Confidence 357899999999988888999999999877776643221 123489999999999999999987
Q ss_pred HcCCCCCCCceEEEEc
Q 015515 367 LNDEGNWRSGLRVRLM 382 (405)
Q Consensus 367 ln~~~~~~~glkV~ll 382 (405)
.....+..+.+...+.
T Consensus 150 s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 150 SGSKVLDGNKGEKDLN 165 (285)
T ss_pred hhccccccccccCccc
Confidence 6655555544443333
No 159
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=87.56 E-value=0.34 Score=51.26 Aligned_cols=19 Identities=21% Similarity=0.482 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCCCCCccc
Q 015515 146 HHHHRHQNHHHNNNNSHHQ 164 (405)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~ 164 (405)
.|-||||+-+-.++|---+
T Consensus 583 rhphqhqhrqphphrttrs 601 (990)
T KOG1819|consen 583 RHPHQHQHRQPHPHRTTRS 601 (990)
T ss_pred cCcchhcccCCCCcccccc
Confidence 4455555555555554444
No 160
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=87.29 E-value=2.6 Score=46.87 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=7.4
Q ss_pred cEEEEEeCCHHHHHH
Q 015515 348 LHAFVEYESVELAEK 362 (405)
Q Consensus 348 G~aFVEFes~E~A~k 362 (405)
+...+-|...+.+++
T Consensus 605 ~~tLlh~iv~~i~ek 619 (830)
T KOG1923|consen 605 SMTLLHYIVLTIAEK 619 (830)
T ss_pred ceeeeehhhHHHHHh
Confidence 344555555554444
No 161
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.46 E-value=2.4 Score=45.79 Aligned_cols=91 Identities=20% Similarity=0.227 Sum_probs=61.9
Q ss_pred cceeEEeeCCCcc-ccHHHHHHHHhhc----CCeeEEEEecCCCCCCC--------CC-------CC-------------
Q 015515 287 QSRIVVAENLPED-HCHQNLMKIFSAV----GSVKTIRTCLPQTSGGG--------AS-------SG------------- 333 (405)
Q Consensus 287 ~~rtVyV~nLP~d-~t~e~L~~~Fs~f----G~V~~Vri~~pk~s~~~--------~p-------~~------------- 333 (405)
..+.|.|.|+.|+ +..++|.-+|+.| |.|.+|.|+. -.-|+. .| ++
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYp-SeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYP-SEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEech-hhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 4578999999987 5678999999987 6899998863 222221 01 00
Q ss_pred ------CCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEE
Q 015515 334 ------SRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (405)
Q Consensus 334 ------~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~glkV~l 381 (405)
.|.+-.. ++ .-=||.|+|.+.+.|.+.+..|.|..+...++++.|
T Consensus 252 ~~~~~kLR~Yq~~-rL--kYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 252 DVDREKLRQYQLN-RL--KYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hHHHHHHHHHHhh-hh--eeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 0111110 01 023799999999999999999999888777766544
No 162
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=85.40 E-value=0.53 Score=43.61 Aligned_cols=40 Identities=10% Similarity=0.379 Sum_probs=35.9
Q ss_pred hhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhcccc
Q 015515 223 FILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK 262 (405)
Q Consensus 223 ~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~ 262 (405)
++++++||||+++.+++.++.+.+..++++|.++++..++
T Consensus 26 ~L~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~ndK 65 (207)
T KOG2278|consen 26 RLNMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRNDK 65 (207)
T ss_pred cccccCCCceEHHHHhccchhcccCCcHHHHHHHHhcccc
Confidence 4568899999999999999999999999999999987764
No 163
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=84.95 E-value=8.5 Score=40.34 Aligned_cols=6 Identities=0% Similarity=0.329 Sum_probs=2.3
Q ss_pred HHHHHH
Q 015515 196 ESIQKV 201 (405)
Q Consensus 196 e~~~kI 201 (405)
|+++.|
T Consensus 458 dLL~aI 463 (518)
T KOG1830|consen 458 DLLAAI 463 (518)
T ss_pred HHHHHH
Confidence 333333
No 164
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=84.79 E-value=0.86 Score=42.19 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=44.3
Q ss_pred cceeEEeeCCCccccHHHHHHHHhh-cCCe---eEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSA-VGSV---KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~-fG~V---~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (405)
....|+|++||.++|++++.+..+. ++.- ..+.-..+..+.+ . . .-.-|||.|.+.+++..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~----------~--~---~~SRaYi~F~~~~~~~~ 70 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFK----------P--P---TYSRAYINFKNPEDLLE 70 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSST----------T--S-----EEEEEEESSCHHHHH
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCC----------C--C---cceEEEEEeCCHHHHHH
Confidence 4558999999999999999886665 6654 4444222221111 0 0 02359999999999999
Q ss_pred HHHHHcCCCC
Q 015515 363 AIAELNDEGN 372 (405)
Q Consensus 363 Av~~ln~~~~ 372 (405)
....+++..+
T Consensus 71 F~~~~~g~~F 80 (176)
T PF03467_consen 71 FRDRFDGHVF 80 (176)
T ss_dssp HHHHCTTEEE
T ss_pred HHHhcCCcEE
Confidence 9999988543
No 165
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=83.78 E-value=1.8 Score=40.47 Aligned_cols=59 Identities=22% Similarity=0.111 Sum_probs=40.5
Q ss_pred cHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc--CCCCCCCceE
Q 015515 301 CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN--DEGNWRSGLR 378 (405)
Q Consensus 301 t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln--~~~~~~~glk 378 (405)
..+.|+++|..|+.+.....++- -+-..|.|.+.++|.+|...|. +..+.+..++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----------------------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~ 64 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----------------------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLR 64 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----------------------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-E
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----------------------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceE
Confidence 46789999999999888776521 1246999999999999999988 6666666666
Q ss_pred EEEc
Q 015515 379 VRLM 382 (405)
Q Consensus 379 V~ll 382 (405)
|.+.
T Consensus 65 ~yf~ 68 (184)
T PF04847_consen 65 VYFG 68 (184)
T ss_dssp EE--
T ss_pred EEEc
Confidence 6655
No 166
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=83.77 E-value=2.1 Score=33.55 Aligned_cols=48 Identities=10% Similarity=0.089 Sum_probs=36.9
Q ss_pred cccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCC
Q 015515 299 DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGN 372 (405)
Q Consensus 299 d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~ 372 (405)
.++.++|+..+..|+ ...|+. ++ .| -||.|.+.++|++|....++...
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~--d~----------------------tG-fYIvF~~~~Ea~rC~~~~~~~~~ 58 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRD--DR----------------------TG-FYIVFNDSKEAERCFRAEDGTLF 58 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEe--cC----------------------CE-EEEEECChHHHHHHHHhcCCCEE
Confidence 568899999999996 344544 22 12 49999999999999999887654
No 167
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.35 E-value=3.5 Score=43.43 Aligned_cols=68 Identities=13% Similarity=0.210 Sum_probs=56.6
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcC-CeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG-~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
+++|.|-.+|..+|.-+|..|...|- .|..||++|++.. |+=.++|.|.+.++|...+.+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-------------------nrymvLIkFr~q~da~~Fy~e 134 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-------------------NRYMVLIKFRDQADADTFYEE 134 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-------------------ceEEEEEEeccchhHHHHHHH
Confidence 67999999999999999999887654 5899999886431 244689999999999999999
Q ss_pred HcCCCCCC
Q 015515 367 LNDEGNWR 374 (405)
Q Consensus 367 ln~~~~~~ 374 (405)
+||..+..
T Consensus 135 fNGk~Fn~ 142 (493)
T KOG0804|consen 135 FNGKQFNS 142 (493)
T ss_pred cCCCcCCC
Confidence 99987644
No 168
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.52 E-value=4.7 Score=40.51 Aligned_cols=62 Identities=23% Similarity=0.205 Sum_probs=45.4
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
+..|-|-||+.... .-|...|++||+|..+..-. +-.+-+|-|.++-+|.|||..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~-----------------------ngNwMhirYssr~~A~KALsk- 251 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS-----------------------NGNWMHIRYSSRTHAQKALSK- 251 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC-----------------------CCceEEEEecchhHHHHhhhh-
Confidence 56778889976543 34666899999998887621 124679999999999999885
Q ss_pred cCCCCCC
Q 015515 368 NDEGNWR 374 (405)
Q Consensus 368 n~~~~~~ 374 (405)
|+..+.+
T Consensus 252 ng~ii~g 258 (350)
T KOG4285|consen 252 NGTIIDG 258 (350)
T ss_pred cCeeecc
Confidence 5555444
No 169
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=80.51 E-value=20 Score=37.67 Aligned_cols=6 Identities=33% Similarity=0.318 Sum_probs=2.9
Q ss_pred HHhhhc
Q 015515 220 LIRFIL 225 (405)
Q Consensus 220 L~~~i~ 225 (405)
|+..|+
T Consensus 459 LL~aIr 464 (518)
T KOG1830|consen 459 LLAAIR 464 (518)
T ss_pred HHHHHH
Confidence 444443
No 170
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=80.23 E-value=0.92 Score=47.80 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=54.8
Q ss_pred hcceeEEeeCCCccc-cHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDH-CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~-t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
.+.+++-++-.+... +.++|..-|.+||+|..|.+.+. -..|.|+|.+..+|-+|.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----------------------~~~a~vTF~t~aeag~a~ 426 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----------------------SLHAVVTFKTRAEAGEAY 426 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----------------------hhhheeeeeccccccchh
Confidence 345566666666554 67899999999999999998542 235899999999998787
Q ss_pred HHHcCCCCCCCceEEEEccc
Q 015515 365 AELNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~~ 384 (405)
.. .+..+..+-|||.+.+.
T Consensus 427 ~s-~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 427 AS-HGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cc-ccceecCceeEEEEecC
Confidence 64 34455556688877664
No 171
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=78.45 E-value=1.3 Score=41.41 Aligned_cols=52 Identities=17% Similarity=0.426 Sum_probs=33.1
Q ss_pred cCCCCCceecccccchhhhHhhhcCHHHHHHHhhcccc--ceee---ccccccccCC
Q 015515 225 LKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK--LVVS---EDGKKIKRQN 276 (405)
Q Consensus 225 ~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~--LeVs---edg~kVRR~~ 276 (405)
.++.+|||.++.++...+++...-+.+.|.++++++.+ .++. .++..||-..
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K~Rfel~~~~~~~~~IRA~q 82 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDKQRFELRYEDPGGWRIRANQ 82 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS--EEEE-----TTEEEESS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCCeeEEcccccCceEEECC
Confidence 47899999999999999998777778899999887764 5666 5566777553
No 172
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=75.37 E-value=18 Score=37.20 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=5.1
Q ss_pred CCCCCChHHHHHH
Q 015515 189 QHGGLNDESIQKV 201 (405)
Q Consensus 189 ~~~~~~~e~~~kI 201 (405)
+...+++-..|.|
T Consensus 353 ~~~plSeAEFEdi 365 (498)
T KOG4849|consen 353 QMFPLSEAEFEDI 365 (498)
T ss_pred CCccchHHHHHHH
Confidence 3333444333333
No 173
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=74.89 E-value=3.2 Score=43.39 Aligned_cols=59 Identities=24% Similarity=0.342 Sum_probs=45.5
Q ss_pred eEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 015515 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~ 369 (405)
.+|++||.+..+-.+|+.+|..- .+ + ..|......||+||.+.+..-|.+|++.+++
T Consensus 3 klyignL~p~~~psdl~svfg~a------k~--~---------------~~g~fl~k~gyafvd~pdq~wa~kaie~~sg 59 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDA------KI--P---------------GSGQFLVKSGYAFVDCPDQQWANKAIETLSG 59 (584)
T ss_pred cccccccCCCCChHHHHHHhccc------cC--C---------------CCcceeeecceeeccCCchhhhhhhHHhhch
Confidence 58999999999999999999653 01 0 0111122369999999999999999999998
Q ss_pred CC
Q 015515 370 EG 371 (405)
Q Consensus 370 ~~ 371 (405)
..
T Consensus 60 k~ 61 (584)
T KOG2193|consen 60 KV 61 (584)
T ss_pred hh
Confidence 64
No 174
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=74.84 E-value=2.2 Score=39.81 Aligned_cols=84 Identities=19% Similarity=0.288 Sum_probs=49.8
Q ss_pred hcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeeccccccccCCC--Cc-chhh-hhhcceeEEeeCCCcc
Q 015515 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNP--LT-ESDL-EELQSRIVVAENLPED 299 (405)
Q Consensus 224 i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsedg~kVRR~~P--l~-e~~~-~~~~~rtVyV~nLP~d 299 (405)
+.+|.+|||+++.++...+.+...-+.+.|.+++.++.+-...-++.+||-..- +. +... ......+|| ..
T Consensus 26 L~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~Rf~l~~~~IRA~qGHSi~v~~~~~~~~~P~~ly-----HG 100 (179)
T PRK00819 26 LTLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDKGRFEISGDRIRARQGHSVDVDLDLEEDTPPAVLY-----HG 100 (179)
T ss_pred CccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCCcceEecCceEEeccCcCCccccCCccCCCCceeE-----eC
Confidence 457999999999999876654333477888888888775333323556775531 11 1000 001112333 23
Q ss_pred ccHHHHHHHHhhcC
Q 015515 300 HCHQNLMKIFSAVG 313 (405)
Q Consensus 300 ~t~e~L~~~Fs~fG 313 (405)
+..+.+..+++. |
T Consensus 101 T~~~~~~~I~~~-G 113 (179)
T PRK00819 101 TSSEELDSILEE-G 113 (179)
T ss_pred CCHHHHHHHHHh-C
Confidence 667888888765 5
No 175
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=74.57 E-value=0.81 Score=47.22 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=49.3
Q ss_pred hhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 015515 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (405)
Q Consensus 284 ~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (405)
+++. |||+|.+|..++-..++.++|..||.|...++..- . .+.+|-|+|........|
T Consensus 148 eeir-Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask---------------~------~s~~c~~sf~~qts~~ha 205 (479)
T KOG4676|consen 148 EEIR-RTREVQSLISAAILPESGESFERKGEVSYAHTASK---------------S------RSSSCSHSFRKQTSSKHA 205 (479)
T ss_pred HHHH-hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc---------------C------CCcchhhhHhhhhhHHHH
Confidence 3444 89999999999999999999999999998887421 1 145677899888777777
Q ss_pred HHHHc
Q 015515 364 IAELN 368 (405)
Q Consensus 364 v~~ln 368 (405)
+..++
T Consensus 206 lr~~g 210 (479)
T KOG4676|consen 206 LRSHG 210 (479)
T ss_pred HHhcc
Confidence 76544
No 176
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=74.41 E-value=2.6 Score=48.92 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=8.9
Q ss_pred cCHHHHHHHhhccccc
Q 015515 248 SSHSHLASVLRKSSKL 263 (405)
Q Consensus 248 ~d~~~I~eAL~~S~~L 263 (405)
.|.+-+.+-+.+|..|
T Consensus 221 ~dde~v~dw~y~sr~l 236 (2365)
T COG5178 221 MDDEHVRDWVYTSRDL 236 (2365)
T ss_pred CCcHHHHHHHhhcccc
Confidence 3445556666666555
No 177
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=74.08 E-value=2.1 Score=46.78 Aligned_cols=69 Identities=16% Similarity=0.054 Sum_probs=56.5
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..-||||+|+-+.+..+-++.+...||-|.+...+ + |+|.+|.....+..|+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~-------------------------~-fgf~~f~~~~~~~ra~r~ 92 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD-------------------------K-FGFCEFLKHIGDLRASRL 92 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh-------------------------h-hcccchhhHHHHHHHHHH
Confidence 34599999999999999999999999988766431 2 789999999999999999
Q ss_pred HcCCCCCCCceEEEE
Q 015515 367 LNDEGNWRSGLRVRL 381 (405)
Q Consensus 367 ln~~~~~~~glkV~l 381 (405)
++.....+.++.+..
T Consensus 93 ~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 93 LTELNIDDQKLIENV 107 (668)
T ss_pred hcccCCCcchhhccc
Confidence 988777666665543
No 178
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=72.28 E-value=2.8 Score=48.76 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=7.4
Q ss_pred ccCCccCcCccCCC
Q 015515 117 HQMHHQHHVPVQNY 130 (405)
Q Consensus 117 ~~~~~~~~~~~~~~ 130 (405)
.+.|+.|+.-+++.
T Consensus 82 a~~PpeHLrki~~~ 95 (2365)
T COG5178 82 APIPPEHLRKIQSP 95 (2365)
T ss_pred CCCCHHHHHhhhCc
Confidence 44455555555554
No 179
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=70.55 E-value=1.3 Score=43.94 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=26.3
Q ss_pred eeEEeeCCCcc------------ccHHHHHHHHhhcCCeeEEEEe
Q 015515 289 RIVVAENLPED------------HCHQNLMKIFSAVGSVKTIRTC 321 (405)
Q Consensus 289 rtVyV~nLP~d------------~t~e~L~~~Fs~fG~V~~Vri~ 321 (405)
-|||+.+||-. .+++-|+..|+.||.|..|.|.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 48998888832 3567899999999999888763
No 180
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=68.13 E-value=9.2 Score=41.21 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=24.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHcCCC
Q 015515 345 SNKLHAFVEYESVELAEKAIAELNDEG 371 (405)
Q Consensus 345 ~~KG~aFVEFes~E~A~kAv~~ln~~~ 371 (405)
++.|||||-|-+.+++..+.+++++..
T Consensus 429 cNvGYAFINm~sp~ai~~F~kAFnGk~ 455 (549)
T KOG4660|consen 429 CNVGYAFINMTSPEAIIRFYKAFNGKK 455 (549)
T ss_pred cccceeEEeecCHHHHHHHHHHHcCCc
Confidence 568999999999999999999999965
No 181
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=66.08 E-value=28 Score=27.22 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=33.7
Q ss_pred cccHHHHHHHHhhcCC-----eeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCC
Q 015515 299 DHCHQNLMKIFSAVGS-----VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNW 373 (405)
Q Consensus 299 d~t~e~L~~~Fs~fG~-----V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~ 373 (405)
.++..+|..++...+. |-.|+|. ..|+||+-... .|+++++.|++....
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~-------------------------~~~S~vev~~~-~a~~v~~~l~~~~~~ 65 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF-------------------------DNFSFVEVPEE-VAEKVLEALNGKKIK 65 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE--------------------------SS-EEEEE-TT--HHHHHHHHTT--SS
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe-------------------------eeEEEEEECHH-HHHHHHHHhcCCCCC
Confidence 4566777777776643 4566662 44889998765 678999999998888
Q ss_pred CCceEEEEc
Q 015515 374 RSGLRVRLM 382 (405)
Q Consensus 374 ~~glkV~ll 382 (405)
++.++|+.+
T Consensus 66 gk~v~ve~A 74 (74)
T PF03880_consen 66 GKKVRVERA 74 (74)
T ss_dssp S----EEE-
T ss_pred CeeEEEEEC
Confidence 888888753
No 182
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=64.70 E-value=19 Score=32.70 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=30.7
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEe
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~ 321 (405)
....+++.+++..++..++...|..+|.+..+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 224 KSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccceeeccccccccchhHHHHhccccccceeeecc
Confidence 45688999999999999999999999999766664
No 183
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=61.40 E-value=17 Score=31.52 Aligned_cols=50 Identities=14% Similarity=0.284 Sum_probs=26.7
Q ss_pred eeEEeeCCCcc---------ccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHH
Q 015515 289 RIVVAENLPED---------HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (405)
Q Consensus 289 rtVyV~nLP~d---------~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E 358 (405)
-+++|.|++.+ ++.++|++.|+.|..++ |+.+.... ++.|+++|+|...-
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~-------------------gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ-------------------GHTGFAIVEFNKDW 67 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT-------------------EEEEEEEEE--SSH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC-------------------CCcEEEEEEECCCh
Confidence 36777888654 35678999999998875 55544321 24789999999843
No 184
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=60.12 E-value=44 Score=36.31 Aligned_cols=10 Identities=20% Similarity=0.723 Sum_probs=5.8
Q ss_pred HHHHHHhhcC
Q 015515 304 NLMKIFSAVG 313 (405)
Q Consensus 304 ~L~~~Fs~fG 313 (405)
-|.++|+-.|
T Consensus 418 ~l~~vyeiLG 427 (582)
T PF03276_consen 418 HLNRVYEILG 427 (582)
T ss_pred HHHHHHHHhC
Confidence 3566666555
No 185
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=54.34 E-value=33 Score=34.51 Aligned_cols=70 Identities=13% Similarity=0.208 Sum_probs=51.8
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
-..|+|..+|+..+++.-++..-|-+||.|++|-++....+... +. ..+ ..+-+..+-|-+.+.+...+.
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d----~~--~~d----~~~~SilLSFlsr~~CLdFYN 82 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSD----DY--NDD----KNNQSILLSFLSREICLDFYN 82 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccc----cc--ccc----ccceEEEEeeechHHHHHHHH
Confidence 35688999999999999999999999999999999866532111 11 001 125688999999998876654
No 186
>PTZ00315 2'-phosphotransferase; Provisional
Probab=53.57 E-value=9.4 Score=41.77 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=39.7
Q ss_pred hcCCCCCceecccccchhhhHhhhcCHHHHHHHhhcccc--ceee---ccc-cccccCC
Q 015515 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK--LVVS---EDG-KKIKRQN 276 (405)
Q Consensus 224 i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~--LeVs---edg-~kVRR~~ 276 (405)
+..|.+|||.++.++...+.+...-+.+.|.++++++.+ .+++ +++ .+||-..
T Consensus 398 L~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK~RF~l~~~~~~~~~~IRA~Q 456 (582)
T PTZ00315 398 VPITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDKQRFKLAYGAADGRLYIRANQ 456 (582)
T ss_pred CCcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCCCceEEeccCCCCceEEEecc
Confidence 457899999999999887776555678899999988764 6676 344 3577543
No 187
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=48.60 E-value=9.2 Score=37.16 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=62.7
Q ss_pred CCCCCChHHHHHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhc-----cccc
Q 015515 189 QHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRK-----SSKL 263 (405)
Q Consensus 189 ~~~~~~~e~~~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~-----S~~L 263 (405)
|+--.+..+.++|.+.++.- .+..+.+- ..+.|.+.-.++...+++..+..|.+.+ +.|+. ++.-
T Consensus 10 QnFL~~~~~~~~Iv~~~~~~-------~~~~VlEi--GpG~G~lT~~L~~~~~~v~~vE~d~~~~-~~L~~~~~~~~~~~ 79 (262)
T PF00398_consen 10 QNFLVDPNIADKIVDALDLS-------EGDTVLEI--GPGPGALTRELLKRGKRVIAVEIDPDLA-KHLKERFASNPNVE 79 (262)
T ss_dssp SSEEEHHHHHHHHHHHHTCG-------TTSEEEEE--SSTTSCCHHHHHHHSSEEEEEESSHHHH-HHHHHHCTTCSSEE
T ss_pred cCeeCCHHHHHHHHHhcCCC-------CCCEEEEe--CCCCccchhhHhcccCcceeecCcHhHH-HHHHHHhhhcccce
Confidence 33444566677777666543 22223332 3466666666655556676676675443 33332 2222
Q ss_pred eeeccccccccCCCCcchhhhhhcceeEEeeCCCccccHHHHHHHHh--hcCCeeEEEE
Q 015515 264 VVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFS--AVGSVKTIRT 320 (405)
Q Consensus 264 eVsedg~kVRR~~Pl~e~~~~~~~~rtVyV~nLP~d~t~e~L~~~Fs--~fG~V~~Vri 320 (405)
.+..|...+.....+ .....++|+|||+..+.+-|.+++. .||.+..+-+
T Consensus 80 vi~~D~l~~~~~~~~-------~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~ 131 (262)
T PF00398_consen 80 VINGDFLKWDLYDLL-------KNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLM 131 (262)
T ss_dssp EEES-TTTSCGGGHC-------SSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEE
T ss_pred eeecchhccccHHhh-------cCCceEEEEEecccchHHHHHHHhhcccccccceEEE
Confidence 334443222211100 2356788999999999999988886 4554444433
No 188
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.46 E-value=59 Score=34.15 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=40.5
Q ss_pred eEEeeCCCccccHHHHHHHHhhcCCe-eEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 290 IVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs~fG~V-~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
.|-|.+||....-++|...|+.||.- -.|.++- .-+||-.|++...|..|+..
T Consensus 393 VlEIydfp~efkteDll~~f~~yq~kgfdIkWvD------------------------dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 393 VLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD------------------------DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred eeEeccCchhhccHHHHHHHHHhhcCCceeEEee------------------------cceeEEeecchHHHHHHhhc
Confidence 56788999998889999999999762 2333321 34789999999999888764
No 189
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=44.43 E-value=21 Score=37.71 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=12.4
Q ss_pred cccccccCCCCCCCHH
Q 015515 204 QVEYYFSDLNLATTDH 219 (405)
Q Consensus 204 QvEfYFSD~NL~~D~f 219 (405)
-||+|-.+.||.-|.-
T Consensus 335 ~VEnq~~~~~~Vi~~~ 350 (480)
T KOG2675|consen 335 RVENQENNKNLVIDDA 350 (480)
T ss_pred EEeeecCCcceeeeec
Confidence 5889988888876644
No 190
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=43.60 E-value=97 Score=33.75 Aligned_cols=8 Identities=38% Similarity=0.547 Sum_probs=4.1
Q ss_pred CCcccccc
Q 015515 108 GAFHVIPV 115 (405)
Q Consensus 108 ~~~~~~~~ 115 (405)
+...|+|+
T Consensus 259 ~~~~ViPI 266 (582)
T PF03276_consen 259 PPQPVIPI 266 (582)
T ss_pred CccccccH
Confidence 34455565
No 191
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=41.00 E-value=34 Score=36.93 Aligned_cols=10 Identities=40% Similarity=0.620 Sum_probs=5.0
Q ss_pred eeEEeeCCCc
Q 015515 289 RIVVAENLPE 298 (405)
Q Consensus 289 rtVyV~nLP~ 298 (405)
++++|++||+
T Consensus 520 c~~vVE~Fpe 529 (817)
T KOG1925|consen 520 CSLVVETFPE 529 (817)
T ss_pred HHHHHHhCCc
Confidence 3445555554
No 192
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=40.66 E-value=53 Score=40.60 Aligned_cols=7 Identities=0% Similarity=-0.111 Sum_probs=2.8
Q ss_pred cccchhh
Q 015515 236 TVASFKK 242 (405)
Q Consensus 236 ~i~sFkR 242 (405)
.++.+.+
T Consensus 1864 swlQy~w 1870 (2039)
T PRK15319 1864 SWYQYGF 1870 (2039)
T ss_pred EEEEeeE
Confidence 3444433
No 193
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=38.02 E-value=1.3e+02 Score=23.09 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 015515 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (405)
Q Consensus 302 ~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~ 369 (405)
..+|.+++..+| +...+|. |. ++-+++|+-+++.+.++++.+.+..
T Consensus 36 i~~~~~~~~~~G-a~~~~~s-----Gs----------------G~G~~v~~l~~~~~~~~~v~~~l~~ 81 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMS-----GS----------------GGGPTVFALCKDEDDAERVAEALRE 81 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEE-----TT----------------SSSSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecC-----CC----------------CCCCeEEEEECCHHHHHHHHHHHHH
Confidence 567888889999 6666662 11 1256889999999999999888754
No 194
>KOG3423 consensus Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=35.91 E-value=60 Score=30.07 Aligned_cols=97 Identities=12% Similarity=0.247 Sum_probs=48.4
Q ss_pred CChHHHHHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcC---HHHHHHHhhccccceeeccc
Q 015515 193 LNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISS---HSHLASVLRKSSKLVVSEDG 269 (405)
Q Consensus 193 ~~~e~~~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d---~~~I~eAL~~S~~LeVsedg 269 (405)
..+..++.++.||+-| .-++-|....=.+++ -||.-.+. ..+||.+|... .+.+.+|++-+.
T Consensus 68 ~~d~~l~efl~qLddY---tP~IPDavt~~yL~~--aGf~~~D~--rv~RLvsLaAQKfvSDIa~DA~Q~~k-------- 132 (176)
T KOG3423|consen 68 TKDTHLEEFLAQLDDY---TPTIPDAVTDHYLKK--AGFQTSDP--RVKRLVSLAAQKFVSDIANDALQHSK-------- 132 (176)
T ss_pred CcchHHHHHHHHHhcC---CCCCcHHHHHHHHHh--cCCCcCcH--HHHHHHHHHHHHHHHHHHHHHHHHhh--------
Confidence 3455678899999988 234445322222212 36654432 23444444432 144556666543
Q ss_pred cccccCCCCcchhhhhhcceeEEeeCCCccccHHHHHHHHhhcCC
Q 015515 270 KKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGS 314 (405)
Q Consensus 270 ~kVRR~~Pl~e~~~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~ 314 (405)
+|-...+....... +.+ -+..|+++|......||-
T Consensus 133 --~r~~~~~~~~k~~~-kdk-------K~tLtmeDL~~AL~EyGi 167 (176)
T KOG3423|consen 133 --IRTKTAIGKDKKQA-KDK-------KYTLTMEDLSPALAEYGI 167 (176)
T ss_pred --hccccccccccccc-ccc-------ceeeeHHHHHHHHHHhCc
Confidence 22211111110011 111 134689999999999993
No 195
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=34.62 E-value=61 Score=25.18 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=23.6
Q ss_pred EEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEcc
Q 015515 349 HAFVEYESVELAEKAIAELNDEGNWRSGLRVRLML 383 (405)
Q Consensus 349 ~aFVEFes~E~A~kAv~~ln~~~~~~~glkV~ll~ 383 (405)
+.+|.|.+..+|.+|-+.|.+. |+.++++-
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~-----gi~~~liP 32 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKN-----GIPVRLIP 32 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHC-----CCcEEEeC
Confidence 5799999999999999988753 45555553
No 196
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=34.45 E-value=1.2e+02 Score=24.88 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=34.7
Q ss_pred CCCccccHHHHHHHHhh-cC-CeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 295 NLPEDHCHQNLMKIFSA-VG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 295 nLP~d~t~e~L~~~Fs~-fG-~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
....+.|..+|++.++. || .|..|+.+.-.. . .-=|||.+..-++|......+
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~----------~----------~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPK----------G----------EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC----------C----------cEEEEEEeCCCCcHHHHHHhh
Confidence 34456777777777766 45 578887654320 0 113899999988888776554
No 197
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=31.70 E-value=1.1e+02 Score=33.85 Aligned_cols=37 Identities=8% Similarity=0.175 Sum_probs=29.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEccc
Q 015515 347 KLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 347 KG~aFVEFes~E~A~kAv~~ln~~~~~~~glkV~ll~~ 384 (405)
..|.|||-.. +.|.+.+..|++....++.|.|..+..
T Consensus 526 ~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 526 ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 5688999875 457889999988877788888888753
No 198
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=30.36 E-value=2.6e+02 Score=21.60 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=31.1
Q ss_pred ccHHHHHHHHhhcC-CeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeC-CHHHHHHHHHHHcCC
Q 015515 300 HCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE-SVELAEKAIAELNDE 370 (405)
Q Consensus 300 ~t~e~L~~~Fs~fG-~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFe-s~E~A~kAv~~ln~~ 370 (405)
-+.-++.+.|+.+| .+..|.-+ |...+. +.=..||+|+ ..+..++|++.|...
T Consensus 12 G~L~~vL~~f~~~~iNlt~IeSR---------P~~~~~---------~~y~Ffvd~~~~~~~~~~~l~~L~~~ 66 (74)
T cd04904 12 GALARALKLFEEFGVNLTHIESR---------PSRRNG---------SEYEFFVDCEVDRGDLDQLISSLRRV 66 (74)
T ss_pred cHHHHHHHHHHHCCCcEEEEECC---------CCCCCC---------ceEEEEEEEEcChHHHHHHHHHHHHh
Confidence 34667888999987 34444321 111111 1335689988 455667788888653
No 199
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=30.29 E-value=1e+02 Score=31.13 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=39.5
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCe-eEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCH-------HHH
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV-------ELA 360 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V-~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~-------E~A 360 (405)
.-||++||+.|.-..+|+..+.+-|-+ .+|..- +..|-||..|-+. +++
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----------------------g~~~k~flh~~~~~~~~~~~~~~ 387 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----------------------GHFGKCFLHFGNRKGVPSTQDDM 387 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee-----------------------cCCcceeEecCCccCCCCCchHH
Confidence 459999999999999999888876643 444331 1356789999764 455
Q ss_pred HHHHHHHc
Q 015515 361 EKAIAELN 368 (405)
Q Consensus 361 ~kAv~~ln 368 (405)
.+++..+|
T Consensus 388 ~~~~~s~~ 395 (396)
T KOG4410|consen 388 DKVLKSLN 395 (396)
T ss_pred HHHhccCC
Confidence 55555443
No 200
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=29.07 E-value=1.8e+02 Score=23.38 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=36.8
Q ss_pred EEeeCCCccccHHHHHHHHhh-cC-CeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 291 VVAENLPEDHCHQNLMKIFSA-VG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 291 VyV~nLP~d~t~e~L~~~Fs~-fG-~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
-|+=.++.+.|..+|++.++. || .|..|+.+.-.. + .-=|||.+..-+.|......+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-------~-------------~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-------G-------------EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-------C-------------ceEEEEEECCCCcHHHHHHhh
Confidence 344445567888888887776 55 577777653210 0 113899999888887776554
No 201
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=28.83 E-value=2.9e+02 Score=27.24 Aligned_cols=74 Identities=26% Similarity=0.344 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCcCcccCCCCCCCCCCC---CCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCcccccccccCC
Q 015515 47 FVPTRNPQSTQSKPQVQVQVQQPPQRVMMP---PPPPPAAAMVHPHPPPP---HPPSPHHVYPPHGTGAFHVIPVHHQMH 120 (405)
Q Consensus 47 ~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~---ppppp~~~~~~~~~ppp---~p~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (405)
|.+..+-+..+.++.-+.--+|-|.++.++ |+-=||+..+++.++|= |++++...|+|+--+-.|+.|..-+++
T Consensus 123 f~~~p~~p~g~~pp~~~~gmpp~p~~~~~p~gmp~~~ppp~g~pp~~~pgv~mp~~g~pg~~~pp~mpi~~g~p~~~p~p 202 (341)
T KOG2893|consen 123 FPGMPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGHGPPGGPPMP 202 (341)
T ss_pred CCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCcCcCCCCCCCCCCCC
No 202
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=27.83 E-value=35 Score=28.27 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=20.9
Q ss_pred hhcceeEEeeCCCccccHHHHHHH
Q 015515 285 ELQSRIVVAENLPEDHCHQNLMKI 308 (405)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~e~L~~~ 308 (405)
.+..|+|.|.|||....+|+|++.
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheee
Confidence 457889999999999999999865
No 203
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.23 E-value=1e+02 Score=31.72 Aligned_cols=16 Identities=6% Similarity=0.146 Sum_probs=7.0
Q ss_pred CChHHHHHHhhccccc
Q 015515 193 LNDESIQKVLNQVEYY 208 (405)
Q Consensus 193 ~~~e~~~kI~kQvEfY 208 (405)
..++++.+..+-+|-+
T Consensus 215 ~~eklR~r~eeeme~~ 230 (365)
T KOG2391|consen 215 VREKLRRRREEEMERL 230 (365)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 204
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=26.58 E-value=17 Score=38.27 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=62.9
Q ss_pred hhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
...+|.+-|.|+|....++-|..+...||.|+++....... + .-..-|+|.+.+.+..|+
T Consensus 77 kqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~-----------------e---tavvnvty~~~~~~~~ai 136 (584)
T KOG2193|consen 77 KQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS-----------------E---TAVVNVTYSAQQQHRQAI 136 (584)
T ss_pred HHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch-----------------H---HHHHHHHHHHHHHHHHHH
Confidence 34567799999999999999999999999999886531110 0 123467899999999999
Q ss_pred HHHcCCCCCCCceEEEEcccC
Q 015515 365 AELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~~~ 385 (405)
..|++..+....++|.+.-..
T Consensus 137 ~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 137 HKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred HhhcchHhhhhhhhcccCchh
Confidence 999998777667888776543
No 205
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=25.07 E-value=83 Score=24.48 Aligned_cols=19 Identities=16% Similarity=0.445 Sum_probs=16.4
Q ss_pred HHHHHHHHhhcCCeeEEEE
Q 015515 302 HQNLMKIFSAVGSVKTIRT 320 (405)
Q Consensus 302 ~e~L~~~Fs~fG~V~~Vri 320 (405)
.++|+++|+..|.|..+-+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 4689999999999987766
No 206
>PRK06545 prephenate dehydrogenase; Validated
Probab=24.13 E-value=2.2e+02 Score=28.94 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=40.7
Q ss_pred eEEeeCCCccccHHHHHHHHhhcC-CeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 015515 290 IVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs~fG-~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln 368 (405)
.|||.--++--....|..+....| .|++|+|.+.+. ...|..-+.|.+.+++++|.+.+.
T Consensus 292 ~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~-------------------~~~g~~~~~~~~~~~~~~~~~~~~ 352 (359)
T PRK06545 292 DLYVDVPDEPGVIARVTAILGEEGISIENLRILEARE-------------------DIHGVLQISFKNEEDRERAKALLE 352 (359)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccC-------------------CcCceEEEEeCCHHHHHHHHHHHH
Confidence 455443333334456666666666 588999865421 015778899999999999999886
Q ss_pred C
Q 015515 369 D 369 (405)
Q Consensus 369 ~ 369 (405)
.
T Consensus 353 ~ 353 (359)
T PRK06545 353 E 353 (359)
T ss_pred h
Confidence 4
No 207
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=23.86 E-value=1.8e+02 Score=33.22 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=8.1
Q ss_pred CCCCCceeccccc
Q 015515 226 KDPEGYVPISTVA 238 (405)
Q Consensus 226 k~~eG~Vpi~~i~ 238 (405)
...+||||-..+.
T Consensus 1092 ~~keG~~P~~Yv~ 1104 (1106)
T KOG0162|consen 1092 NGKEGLFPGNYVT 1104 (1106)
T ss_pred CCccccccccccc
Confidence 3467888766543
No 208
>PRK11901 hypothetical protein; Reviewed
Probab=23.36 E-value=1.3e+02 Score=30.72 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=35.6
Q ss_pred eEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEE--EeCCHHHHHHHHHHH
Q 015515 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFV--EYESVELAEKAIAEL 367 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFV--EFes~E~A~kAv~~l 367 (405)
||-+..+ ..++.|++|-.+++ +..+++.+-. |.++ ..|+.| +|.+.++|+.|++.|
T Consensus 247 TLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~----------RnGk--------pWYVVvyG~Y~Sr~eAk~Ai~sL 304 (327)
T PRK11901 247 TLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETK----------RDGK--------PWYVLVSGNYASSAEAKRAIATL 304 (327)
T ss_pred EEEeecC---CCHHHHHHHHHHcC-cCceEEEEEE----------ECCc--------eEEEEEecCcCCHHHHHHHHHhC
Confidence 4444443 55778888888775 4556554321 2211 223322 699999999999987
Q ss_pred cC
Q 015515 368 ND 369 (405)
Q Consensus 368 n~ 369 (405)
-.
T Consensus 305 Pa 306 (327)
T PRK11901 305 PA 306 (327)
T ss_pred CH
Confidence 64
No 209
>PRK09752 adhesin; Provisional
Probab=23.01 E-value=87 Score=37.24 Aligned_cols=12 Identities=0% Similarity=0.111 Sum_probs=6.3
Q ss_pred cccccchhhhHh
Q 015515 234 ISTVASFKKIKA 245 (405)
Q Consensus 234 i~~i~sFkRmk~ 245 (405)
++.++.+.+.+.
T Consensus 1081 VD~wlQY~WFdN 1092 (1250)
T PRK09752 1081 LDSWLQYAWFNN 1092 (1250)
T ss_pred EEEEEEeeEecc
Confidence 555555555444
No 210
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=22.91 E-value=2.9e+02 Score=21.29 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=36.6
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCC
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes 356 (405)
.++.|.++-=..+...+++..+...-|..|.+-.+ ++.++|+|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~-----------------------~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE-----------------------KGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc-----------------------cCeEEEEEcC
Confidence 47888888777888999999999888988888432 4568999998
No 211
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=22.60 E-value=78 Score=25.51 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=19.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHcC
Q 015515 347 KLHAFVEYESVELAEKAIAELND 369 (405)
Q Consensus 347 KG~aFVEFes~E~A~kAv~~ln~ 369 (405)
|||.|||=.+.++..+|++.+.+
T Consensus 44 kGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 44 KGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp TSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCCHHHHHHHHhcccc
Confidence 89999999999999999887654
No 212
>KOG2590 consensus RNA-binding protein LARP/SRO9 and related La domain proteins [Posttranslational modification, protein turnover, chaperones; Translation, ribosomal structure and biogenesis]
Probab=21.49 E-value=24 Score=37.56 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=51.3
Q ss_pred HHHhhcccccccCCCCCCCHHHHhhhcCCCCC-ceecccccchhhhHhhhcCHHHHHHHhhcc
Q 015515 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEG-YVPISTVASFKKIKAIISSHSHLASVLRKS 260 (405)
Q Consensus 199 ~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG-~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S 260 (405)
.+-.++++|||+-.++.+|.++..++.....| +.++..+.++.+...++.+...++..+..+
T Consensus 101 ~~~~k~~s~~~~~~~~~~~~~~~~k~~~t~~~~~~~~S~~~~s~~~~~~s~n~~~~~~~~~~s 163 (448)
T KOG2590|consen 101 SKSDKKKSWPASKPFTPRDSFKGSKPTNTGNGTFLPISKISSSGPVSGGSANNSNIRGPLKGS 163 (448)
T ss_pred ccccccccCcccCCCCccccccCCCccccCCCccCCCccccccccccCcccccccccCcCCCC
Confidence 34455999999999999999999985433333 999999999999999999988888888764
No 213
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=20.95 E-value=3.3e+02 Score=19.67 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=40.1
Q ss_pred eEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCH----HHHHHHHH
Q 015515 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV----ELAEKAIA 365 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~----E~A~kAv~ 365 (405)
|+.|.|+.=..+...|++.+...--|..+.+-.. .+.+-|+|... ++..++++
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~-----------------------~~~v~v~~~~~~~~~~~i~~~i~ 57 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE-----------------------TKTVTVTYDPDKTSIEKIIEAIE 57 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT-----------------------TTEEEEEESTTTSCHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC-----------------------CCEEEEEEecCCCCHHHHHHHHH
Confidence 5778888888889999999999988999988432 35678888754 44455554
Q ss_pred H
Q 015515 366 E 366 (405)
Q Consensus 366 ~ 366 (405)
.
T Consensus 58 ~ 58 (62)
T PF00403_consen 58 K 58 (62)
T ss_dssp H
T ss_pred H
Confidence 4
No 214
>PF14893 PNMA: PNMA
Probab=20.68 E-value=76 Score=32.50 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.0
Q ss_pred ceeEEeeCCCccccHHHHHHHHhh
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSA 311 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~ 311 (405)
.|.|.|.|||.++++++|++....
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHH
Confidence 468999999999999988876543
No 215
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=20.13 E-value=99 Score=32.85 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=5.9
Q ss_pred EEEeCCHHHH
Q 015515 351 FVEYESVELA 360 (405)
Q Consensus 351 FVEFes~E~A 360 (405)
|+||.=.|.-
T Consensus 454 y~EfpvPEQf 463 (480)
T KOG2675|consen 454 YVEFPVPEQF 463 (480)
T ss_pred cccccChHHH
Confidence 6666655543
Done!