Query 015515
Match_columns 405
No_of_seqs 252 out of 1938
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 13:58:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2voo_A Lupus LA protein; RNA-b 100.0 2.3E-38 8E-43 292.2 13.0 175 191-385 6-187 (193)
2 1s29_A LA protein; winged heli 99.9 6.2E-29 2.1E-33 204.3 4.2 89 191-279 4-92 (92)
3 2cqk_A C-MPL binding protein; 99.9 1.4E-26 4.9E-31 193.0 2.7 86 192-279 9-94 (101)
4 1u6f_A Tcubp1, RNA-binding pro 99.7 7.9E-18 2.7E-22 145.3 11.3 90 285-391 39-128 (139)
5 2dnz_A Probable RNA-binding pr 99.7 3.7E-17 1.3E-21 131.8 13.1 85 287-388 4-88 (95)
6 4fxv_A ELAV-like protein 1; RN 99.7 1.7E-17 5.8E-22 136.7 9.6 80 287-383 18-97 (99)
7 1x5s_A Cold-inducible RNA-bind 99.7 5.7E-17 2E-21 132.5 11.7 85 287-388 11-95 (102)
8 2fy1_A RNA-binding motif prote 99.7 7.7E-17 2.6E-21 136.2 12.6 87 286-390 5-91 (116)
9 2dgs_A DAZ-associated protein 99.7 7.8E-17 2.7E-21 131.2 12.0 86 286-389 8-93 (99)
10 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.9E-17 9.9E-22 144.8 10.1 87 287-390 38-124 (156)
11 3ex7_B RNA-binding protein 8A; 99.7 4.8E-17 1.6E-21 138.1 10.8 89 286-391 20-108 (126)
12 1whw_A Hypothetical protein ri 99.7 8E-17 2.8E-21 130.9 11.7 86 286-388 6-91 (99)
13 1x5t_A Splicing factor 3B subu 99.7 3.5E-17 1.2E-21 132.2 9.0 85 287-388 4-89 (96)
14 2dgp_A Bruno-like 4, RNA bindi 99.7 9.3E-17 3.2E-21 132.1 11.4 86 286-388 11-99 (106)
15 1x5u_A Splicing factor 3B subu 99.7 8.3E-17 2.8E-21 132.2 11.0 85 287-388 14-98 (105)
16 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5.2E-17 1.8E-21 132.8 8.8 86 287-389 11-96 (102)
17 3s8s_A Histone-lysine N-methyl 99.7 6.9E-17 2.4E-21 135.8 9.5 81 287-384 5-85 (110)
18 2dnm_A SRP46 splicing factor; 99.7 1.2E-16 3.9E-21 131.1 9.9 85 287-388 12-96 (103)
19 2cph_A RNA binding motif prote 99.7 2.4E-16 8.3E-21 129.6 11.8 86 286-388 13-100 (107)
20 1wi8_A EIF-4B, eukaryotic tran 99.7 1.1E-16 3.7E-21 131.7 9.4 84 287-389 14-98 (104)
21 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.6E-16 5.5E-21 125.8 9.6 82 287-385 5-86 (87)
22 2d9p_A Polyadenylate-binding p 99.7 2E-16 6.9E-21 129.7 10.5 85 286-389 13-97 (103)
23 2lxi_A RNA-binding protein 10; 99.7 2.9E-17 1E-21 133.0 5.4 81 288-385 1-83 (91)
24 2cqd_A RNA-binding region cont 99.7 2E-16 6.9E-21 132.5 10.4 82 286-385 15-96 (116)
25 1x4a_A Splicing factor, argini 99.7 1.9E-16 6.6E-21 131.2 10.1 80 286-385 20-99 (109)
26 1p27_B RNA-binding protein 8A; 99.7 3.4E-16 1.1E-20 128.8 11.4 84 286-386 21-104 (106)
27 1x4h_A RNA-binding protein 28; 99.7 2.9E-16 9.8E-21 130.0 10.8 85 287-388 14-104 (111)
28 2dnq_A RNA-binding protein 4B; 99.7 5.5E-16 1.9E-20 124.2 11.8 77 287-388 7-83 (90)
29 2cpe_A RNA-binding protein EWS 99.7 1.4E-16 4.9E-21 132.7 8.6 86 286-388 13-106 (113)
30 2cq0_A Eukaryotic translation 99.7 1.9E-16 6.5E-21 129.8 9.1 85 287-388 14-98 (103)
31 2cpz_A CUG triplet repeat RNA- 99.7 2.3E-16 7.9E-21 132.0 9.7 85 287-388 24-108 (115)
32 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.8E-16 1.3E-20 128.0 10.7 84 286-388 13-96 (103)
33 3p5t_L Cleavage and polyadenyl 99.7 1E-16 3.4E-21 128.9 7.1 81 289-386 2-84 (90)
34 3ns6_A Eukaryotic translation 99.7 1.4E-16 4.8E-21 130.9 8.0 81 287-384 5-92 (100)
35 2dgo_A Cytotoxic granule-assoc 99.7 4.5E-16 1.5E-20 130.0 11.0 87 286-389 13-99 (115)
36 2do4_A Squamous cell carcinoma 99.7 3.4E-16 1.2E-20 127.6 10.0 84 286-387 15-98 (100)
37 2cpf_A RNA binding motif prote 99.7 2E-16 6.8E-21 128.4 8.5 88 287-388 4-91 (98)
38 4f25_A Polyadenylate-binding p 99.7 2.2E-16 7.6E-21 132.9 9.0 82 288-388 5-86 (115)
39 2dnh_A Bruno-like 5, RNA bindi 99.7 8.1E-16 2.8E-20 126.3 11.9 84 287-388 14-100 (105)
40 2cq3_A RNA-binding protein 9; 99.7 7.4E-16 2.5E-20 126.3 11.6 86 286-390 13-98 (103)
41 3md1_A Nuclear and cytoplasmic 99.7 4.3E-16 1.5E-20 122.3 9.8 80 289-385 2-81 (83)
42 2x1f_A MRNA 3'-END-processing 99.7 3.4E-16 1.2E-20 126.9 9.5 81 288-385 2-82 (96)
43 2cq4_A RNA binding motif prote 99.6 1.1E-16 3.7E-21 133.8 6.5 85 284-386 21-105 (114)
44 1x4b_A Heterogeneous nuclear r 99.6 2.9E-16 1E-20 131.5 8.8 85 285-387 24-108 (116)
45 3ucg_A Polyadenylate-binding p 99.6 3.5E-16 1.2E-20 124.3 8.8 81 286-384 4-84 (89)
46 2hvz_A Splicing factor, argini 99.6 1.1E-15 3.7E-20 124.8 11.9 78 289-388 1-78 (101)
47 1wex_A Hypothetical protein (r 99.6 1.1E-15 3.8E-20 127.5 12.0 79 287-388 14-94 (104)
48 1p1t_A Cleavage stimulation fa 99.6 7.8E-17 2.7E-21 131.9 4.9 86 286-388 6-91 (104)
49 2adc_A Polypyrimidine tract-bi 99.6 1.6E-15 5.6E-20 141.4 14.4 76 288-385 151-228 (229)
50 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.1E-16 1.1E-20 123.6 8.0 79 287-382 6-84 (85)
51 1oo0_B CG8781-PA, drosophila Y 99.6 5.2E-16 1.8E-20 128.6 9.8 86 286-388 24-109 (110)
52 4a8x_A RNA-binding protein wit 99.6 2.6E-16 8.9E-21 124.6 7.6 83 287-385 3-85 (88)
53 1s79_A Lupus LA protein; RRM, 99.6 6.3E-16 2.1E-20 128.5 9.9 80 286-384 9-88 (103)
54 2dhg_A TRNA selenocysteine ass 99.6 7.2E-16 2.5E-20 126.4 10.2 84 287-388 8-93 (104)
55 2dgu_A Heterogeneous nuclear r 99.6 6.9E-16 2.4E-20 126.8 9.9 78 287-389 10-87 (103)
56 2lkz_A RNA-binding protein 5; 99.6 2.1E-16 7.1E-21 129.9 6.7 80 287-383 8-93 (95)
57 2kvi_A Nuclear polyadenylated 99.6 7.2E-16 2.5E-20 125.3 9.9 78 286-388 8-86 (96)
58 2dng_A Eukaryotic translation 99.6 6.6E-16 2.2E-20 126.7 9.6 83 287-388 14-96 (103)
59 2jwn_A Embryonic polyadenylate 99.6 5.1E-16 1.7E-20 131.4 9.2 84 284-385 32-115 (124)
60 2la6_A RNA-binding protein FUS 99.6 8.3E-16 2.8E-20 125.3 10.1 79 287-382 12-98 (99)
61 1x4c_A Splicing factor, argini 99.6 1E-15 3.5E-20 127.1 10.6 85 287-395 14-103 (108)
62 2dgt_A RNA-binding protein 30; 99.6 8.5E-16 2.9E-20 123.6 9.8 78 286-388 8-85 (92)
63 2div_A TRNA selenocysteine ass 99.6 5.5E-16 1.9E-20 125.9 8.6 80 287-383 8-92 (99)
64 2e5h_A Zinc finger CCHC-type a 99.6 5.5E-16 1.9E-20 124.6 8.5 79 287-382 15-93 (94)
65 2dnp_A RNA-binding protein 14; 99.6 8.7E-16 3E-20 123.0 9.4 78 286-388 7-84 (90)
66 2kxn_B Transformer-2 protein h 99.6 8.5E-16 2.9E-20 132.5 9.9 82 287-385 45-126 (129)
67 2jrs_A RNA-binding protein 39; 99.6 9.8E-16 3.4E-20 127.8 10.0 83 286-385 24-106 (108)
68 2cqc_A Arginine/serine-rich sp 99.6 6.8E-16 2.3E-20 124.1 8.7 80 287-383 14-93 (95)
69 1sjq_A Polypyrimidine tract-bi 99.6 4.4E-16 1.5E-20 130.8 7.8 79 287-388 15-95 (105)
70 1x4d_A Matrin 3; structural ge 99.6 6.4E-16 2.2E-20 128.9 8.6 75 287-384 14-91 (102)
71 2dh8_A DAZ-associated protein 99.6 3.3E-16 1.1E-20 128.8 6.6 85 286-388 14-98 (105)
72 2cpj_A Non-POU domain-containi 99.6 1.3E-15 4.5E-20 124.1 10.0 79 287-388 14-92 (99)
73 3r27_A HnRNP L, heterogeneous 99.6 1E-15 3.5E-20 127.5 9.6 76 287-385 20-97 (100)
74 2do0_A HnRNP M, heterogeneous 99.6 1.8E-15 6E-20 126.0 10.9 84 287-388 14-97 (114)
75 2lcw_A RNA-binding protein FUS 99.4 3E-17 1E-21 137.8 0.0 87 286-389 5-99 (116)
76 2dgx_A KIAA0430 protein; RRM d 99.6 1.4E-15 4.9E-20 123.7 9.8 82 287-388 8-93 (96)
77 2ad9_A Polypyrimidine tract-bi 99.6 1.5E-15 5.2E-20 130.2 10.4 80 287-389 30-111 (119)
78 2ywk_A Putative RNA-binding pr 99.6 9.7E-16 3.3E-20 123.4 8.7 80 286-383 14-93 (95)
79 2cqg_A TDP-43, TAR DNA-binding 99.6 1.5E-15 5.1E-20 124.4 9.9 83 287-388 14-96 (103)
80 2dgv_A HnRNP M, heterogeneous 99.6 1.7E-15 5.7E-20 121.3 10.0 82 287-387 7-88 (92)
81 2cpi_A CCR4-NOT transcription 99.6 6.9E-16 2.3E-20 128.9 7.9 89 286-388 13-104 (111)
82 2khc_A Testis-specific RNP-typ 99.6 5.3E-16 1.8E-20 130.1 7.2 80 286-382 38-117 (118)
83 2cq1_A PTB-like protein L; RRM 99.6 1.8E-15 6.2E-20 125.7 10.1 80 287-389 14-95 (101)
84 1x4g_A Nucleolysin TIAR; struc 99.6 1.6E-15 5.5E-20 125.8 9.8 80 286-388 23-102 (109)
85 2m2b_A RNA-binding protein 10; 99.6 4.8E-16 1.6E-20 133.6 6.5 85 286-388 21-111 (131)
86 2rs2_A Musashi-1, RNA-binding 99.6 1.3E-15 4.3E-20 127.2 8.8 85 286-388 23-107 (109)
87 3ulh_A THO complex subunit 4; 99.6 2E-15 6.7E-20 124.4 9.5 79 287-383 28-106 (107)
88 3n9u_C Cleavage and polyadenyl 99.6 1.1E-15 3.9E-20 136.1 8.6 81 287-384 54-136 (156)
89 1wez_A HnRNP H', FTP-3, hetero 99.6 1.3E-15 4.4E-20 126.1 8.3 80 287-386 14-93 (102)
90 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.7E-15 5.9E-20 135.0 9.7 89 286-391 70-158 (165)
91 1uaw_A Mouse-musashi-1; RNP-ty 99.6 9.7E-16 3.3E-20 118.5 6.9 76 289-382 1-76 (77)
92 1l3k_A Heterogeneous nuclear r 99.6 2.6E-15 9E-20 134.5 10.6 92 286-395 102-193 (196)
93 2cpd_A Apobec-1 stimulating pr 99.6 3.2E-15 1.1E-19 121.7 10.1 75 287-386 14-90 (99)
94 3beg_B Splicing factor, argini 99.6 3.6E-15 1.2E-19 125.6 10.5 87 287-397 15-106 (115)
95 2lea_A Serine/arginine-rich sp 99.6 1.9E-15 6.5E-20 131.2 8.9 85 286-387 45-129 (135)
96 2kn4_A Immunoglobulin G-bindin 99.6 3.2E-15 1.1E-19 131.3 10.5 86 286-388 68-153 (158)
97 3s7r_A Heterogeneous nuclear r 99.6 1.7E-15 5.7E-20 120.2 7.7 78 286-381 9-86 (87)
98 2cqh_A IGF-II mRNA-binding pro 99.6 1.7E-15 6E-20 121.8 7.9 78 287-388 7-86 (93)
99 1why_A Hypothetical protein ri 99.6 4.8E-15 1.6E-19 120.3 10.5 76 287-385 16-93 (97)
100 2ki2_A SS-DNA binding protein 99.6 8.4E-16 2.9E-20 122.8 5.7 81 289-387 2-82 (90)
101 2fc8_A NCL protein; structure 99.6 2.8E-15 9.5E-20 122.4 8.9 82 286-387 13-94 (102)
102 2cpy_A RNA-binding protein 12; 99.6 1.1E-15 3.7E-20 128.3 6.4 81 287-386 14-95 (114)
103 2dis_A Unnamed protein product 99.6 3.8E-15 1.3E-19 123.0 9.5 84 287-387 7-94 (109)
104 2cqp_A RNA-binding protein 12; 99.6 1.1E-15 3.7E-20 124.0 6.1 82 287-385 14-95 (98)
105 2kt5_A RNA and export factor-b 99.6 5.9E-15 2E-19 125.1 10.9 84 287-388 34-117 (124)
106 2mss_A Protein (musashi1); RNA 99.6 2.2E-15 7.5E-20 116.3 7.4 74 290-381 1-74 (75)
107 2krb_A Eukaryotic translation 99.6 1.8E-15 6.1E-20 119.0 7.0 73 288-379 1-80 (81)
108 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.7E-15 5.8E-20 124.1 7.1 81 286-385 17-98 (100)
109 1whx_A Hypothetical protein ri 99.6 5.8E-15 2E-19 123.7 10.4 79 286-387 8-86 (111)
110 2e5j_A Methenyltetrahydrofolat 99.6 4.4E-15 1.5E-19 120.7 9.3 78 287-386 18-95 (97)
111 2hgn_A Heterogeneous nuclear r 99.6 7.3E-16 2.5E-20 135.3 5.0 85 286-390 44-128 (139)
112 2wbr_A GW182, gawky, LD47780P; 99.6 2.8E-15 9.5E-20 122.2 7.9 73 288-383 7-79 (89)
113 1x4f_A Matrin 3; structural ge 99.6 3.5E-15 1.2E-19 126.6 8.8 78 287-387 24-104 (112)
114 2err_A Ataxin-2-binding protei 99.6 2.4E-15 8.2E-20 125.4 7.7 81 286-385 27-107 (109)
115 1x4e_A RNA binding motif, sing 99.6 1.4E-15 4.9E-20 120.1 6.0 76 287-379 4-79 (85)
116 1wf1_A RNA-binding protein RAL 99.6 3.6E-15 1.2E-19 123.9 8.6 73 287-384 26-99 (110)
117 2fc9_A NCL protein; structure 99.6 3.2E-15 1.1E-19 122.0 8.1 81 286-387 13-93 (101)
118 1x5o_A RNA binding motif, sing 99.6 5.7E-15 1.9E-19 123.1 9.7 80 286-383 23-110 (114)
119 3md3_A Nuclear and cytoplasmic 99.6 9.1E-15 3.1E-19 126.9 11.4 116 249-383 50-165 (166)
120 2ek1_A RNA-binding protein 12; 99.6 1.3E-15 4.4E-20 122.6 5.6 80 287-383 14-93 (95)
121 1wg5_A Heterogeneous nuclear r 99.6 6.6E-15 2.3E-19 121.5 10.0 80 287-385 14-94 (104)
122 2qfj_A FBP-interacting repress 99.6 2.3E-14 7.8E-19 130.3 14.3 86 286-388 123-208 (216)
123 2cpx_A Hypothetical protein FL 99.6 6.5E-15 2.2E-19 122.8 9.7 82 287-389 24-109 (115)
124 2xnq_A Nuclear polyadenylated 99.6 6.9E-15 2.4E-19 120.2 9.5 74 286-384 20-94 (97)
125 3q2s_C Cleavage and polyadenyl 99.6 2.7E-15 9.2E-20 141.5 8.0 80 287-383 67-148 (229)
126 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 3.9E-15 1.4E-19 127.7 8.3 79 286-381 61-139 (140)
127 2jvo_A Nucleolar protein 3; nu 99.6 4.1E-15 1.4E-19 124.1 8.0 78 285-387 28-105 (108)
128 2i2y_A Fusion protein consists 99.6 7.3E-15 2.5E-19 128.5 9.8 77 286-384 71-147 (150)
129 2ytc_A PRE-mRNA-splicing facto 99.6 4.7E-15 1.6E-19 116.9 7.7 74 286-382 10-84 (85)
130 1fj7_A Nucleolin RBD1, protein 99.6 1.6E-15 5.6E-20 123.8 4.9 83 286-387 15-97 (101)
131 3lqv_A PRE-mRNA branch site pr 99.6 1.2E-14 4E-19 121.4 10.1 79 287-385 7-85 (115)
132 3pgw_S U1-70K; protein-RNA com 99.6 1.8E-14 6.2E-19 148.1 13.5 83 287-386 101-183 (437)
133 2la4_A Nuclear and cytoplasmic 99.6 4E-15 1.4E-19 121.4 6.9 74 287-383 26-99 (101)
134 2jvr_A Nucleolar protein 3; RN 99.6 4.2E-15 1.4E-19 125.6 7.2 78 287-385 27-105 (111)
135 1b7f_A Protein (SXL-lethal pro 99.6 3.1E-14 1.1E-18 124.2 12.7 112 250-382 55-168 (168)
136 2g4b_A Splicing factor U2AF 65 99.6 1.6E-14 5.5E-19 126.7 10.7 112 249-382 60-171 (172)
137 1fxl_A Paraneoplastic encephal 99.5 4.2E-14 1.4E-18 122.8 13.1 112 249-381 53-166 (167)
138 1iqt_A AUF1, heterogeneous nuc 99.5 3.8E-15 1.3E-19 114.8 5.6 74 290-381 1-74 (75)
139 2nlw_A Eukaryotic translation 99.5 6.7E-15 2.3E-19 121.7 7.4 78 287-383 14-98 (105)
140 4f02_A Polyadenylate-binding p 99.5 1.2E-14 4E-19 134.2 9.8 116 249-385 66-181 (213)
141 3nmr_A Cugbp ELAV-like family 99.5 2.7E-14 9.1E-19 125.2 11.5 79 286-382 93-174 (175)
142 2a3j_A U1 small nuclear ribonu 99.5 9.1E-15 3.1E-19 126.3 8.2 80 287-386 28-111 (127)
143 2dgw_A Probable RNA-binding pr 99.5 1.1E-14 3.8E-19 116.6 8.1 80 286-385 8-87 (91)
144 2db1_A Heterogeneous nuclear r 99.5 4.5E-15 1.5E-19 125.7 5.4 79 287-384 16-97 (118)
145 2dnn_A RNA-binding protein 12; 99.5 5.3E-15 1.8E-19 124.5 5.2 79 287-385 15-93 (109)
146 2e5g_A U6 snRNA-specific termi 99.5 1.8E-14 6.1E-19 116.4 7.9 80 287-389 7-86 (94)
147 1x5p_A Negative elongation fac 99.5 3.6E-14 1.2E-18 115.2 9.8 77 287-388 14-90 (97)
148 2e44_A Insulin-like growth fac 99.5 4.6E-14 1.6E-18 113.9 10.0 78 287-385 14-92 (96)
149 2hgl_A HNRPF protein, heteroge 99.5 7.9E-15 2.7E-19 128.2 5.8 79 287-384 43-124 (136)
150 1fjc_A Nucleolin RBD2, protein 99.5 8.8E-15 3E-19 118.1 5.7 79 286-386 14-92 (96)
151 2lmi_A GRSF-1, G-rich sequence 99.5 7.1E-15 2.4E-19 122.0 5.2 79 287-384 10-91 (107)
152 2cjk_A Nuclear polyadenylated 99.5 2.9E-14 9.8E-19 124.6 9.3 82 286-385 85-166 (167)
153 4f02_A Polyadenylate-binding p 99.5 3.2E-14 1.1E-18 131.2 9.9 80 287-383 14-93 (213)
154 1wel_A RNA-binding protein 12; 99.5 5.5E-15 1.9E-19 125.6 4.1 80 287-384 24-103 (124)
155 3pgw_A U1-A; protein-RNA compl 99.5 2.9E-14 1E-18 135.8 9.1 75 287-383 206-281 (282)
156 2hzc_A Splicing factor U2AF 65 99.5 3.7E-14 1.3E-18 112.1 7.8 70 287-380 5-85 (87)
157 2yh0_A Splicing factor U2AF 65 99.5 5.9E-14 2E-18 125.9 10.1 85 286-387 112-196 (198)
158 1nu4_A U1A RNA binding domain; 99.5 1.9E-14 6.6E-19 116.2 6.3 79 287-385 7-89 (97)
159 1fxl_A Paraneoplastic encephal 99.5 5.7E-14 1.9E-18 122.0 9.7 81 288-385 2-82 (167)
160 2xs2_A Deleted in azoospermia- 99.5 1.7E-14 5.9E-19 117.8 5.5 80 286-385 7-86 (102)
161 1sjr_A Polypyrimidine tract-bi 99.5 1.2E-13 4.1E-18 124.6 11.4 77 288-385 46-124 (164)
162 2f3j_A RNA and export factor b 99.5 7.8E-14 2.7E-18 126.6 9.8 81 287-385 87-167 (177)
163 3egn_A RNA-binding protein 40; 99.5 5.1E-14 1.7E-18 122.2 7.3 82 287-388 44-133 (143)
164 3tyt_A Heterogeneous nuclear r 99.5 1.3E-13 4.6E-18 127.5 10.6 77 287-385 3-80 (205)
165 2qfj_A FBP-interacting repress 99.5 1.5E-13 5E-18 124.9 10.6 81 286-383 26-106 (216)
166 1b7f_A Protein (SXL-lethal pro 99.5 8.2E-14 2.8E-18 121.5 8.4 82 287-385 2-83 (168)
167 1wf0_A TDP-43, TAR DNA-binding 99.5 6.8E-14 2.3E-18 111.4 7.2 73 287-385 4-76 (88)
168 3md3_A Nuclear and cytoplasmic 99.5 1.2E-13 4.2E-18 119.7 9.3 80 289-386 1-80 (166)
169 1qm9_A Polypyrimidine tract-bi 99.5 3.8E-13 1.3E-17 121.4 12.7 76 288-385 120-197 (198)
170 2cq2_A Hypothetical protein LO 99.5 8.4E-14 2.9E-18 118.6 7.6 75 287-384 24-105 (114)
171 1wg1_A KIAA1579 protein, homol 99.5 7.4E-14 2.5E-18 111.5 6.8 75 287-385 4-78 (88)
172 2ghp_A U4/U6 snRNA-associated 99.5 2E-13 6.8E-18 130.7 10.7 82 286-385 208-291 (292)
173 3d2w_A TAR DNA-binding protein 99.5 1.3E-13 4.6E-18 111.0 7.9 72 286-383 9-80 (89)
174 3nmr_A Cugbp ELAV-like family 99.4 3E-13 1E-17 118.5 10.5 82 287-383 2-86 (175)
175 1fje_B Nucleolin RBD12, protei 99.4 3E-13 1E-17 119.3 10.5 111 250-385 64-174 (175)
176 2dnl_A Cytoplasmic polyadenyla 99.4 2.3E-13 7.7E-18 114.1 8.9 67 287-368 7-73 (114)
177 2dha_A FLJ20171 protein; RRM d 99.4 4.3E-14 1.5E-18 121.5 4.5 78 287-383 22-103 (123)
178 3zzy_A Polypyrimidine tract-bi 99.4 2.1E-13 7E-18 118.7 8.8 75 289-385 29-106 (130)
179 2hgm_A HNRPF protein, heteroge 99.4 7.3E-14 2.5E-18 120.7 6.0 78 287-384 41-120 (126)
180 1l3k_A Heterogeneous nuclear r 99.4 1.9E-13 6.6E-18 122.3 9.0 82 286-385 11-92 (196)
181 2bz2_A Negative elongation fac 99.4 3.6E-13 1.2E-17 114.8 9.3 77 286-387 37-113 (121)
182 2e5i_A Heterogeneous nuclear r 99.4 4.7E-13 1.6E-17 115.4 10.0 73 290-385 27-102 (124)
183 3u1l_A PRE-mRNA-splicing facto 99.4 7.8E-13 2.7E-17 126.1 12.0 78 286-386 132-230 (240)
184 2adc_A Polypyrimidine tract-bi 99.4 1.2E-12 4.1E-17 121.9 11.2 78 286-385 32-110 (229)
185 1qm9_A Polypyrimidine tract-bi 99.4 8.3E-13 2.9E-17 119.1 9.4 77 287-385 2-79 (198)
186 2pe8_A Splicing factor 45; RRM 99.4 1.2E-12 4.1E-17 109.2 9.6 83 286-384 6-93 (105)
187 3smz_A Protein raver-1, ribonu 99.4 2.4E-12 8.1E-17 122.7 12.4 113 249-388 66-178 (284)
188 2j8a_A Histone-lysine N-methyl 99.4 3.1E-13 1.1E-17 117.5 5.5 78 289-383 3-94 (136)
189 2cjk_A Nuclear polyadenylated 99.4 4.6E-13 1.6E-17 116.8 6.7 76 287-381 2-77 (167)
190 3pgw_A U1-A; protein-RNA compl 99.4 1.4E-12 4.7E-17 124.2 10.2 81 286-386 7-91 (282)
191 2diu_A KIAA0430 protein; struc 99.4 1.2E-12 4.1E-17 107.9 8.5 71 290-387 11-86 (96)
192 3smz_A Protein raver-1, ribonu 99.4 1.3E-12 4.6E-17 124.4 9.5 84 286-387 182-266 (284)
193 3sde_A Paraspeckle component 1 99.3 3.8E-12 1.3E-16 120.9 10.9 82 287-386 95-180 (261)
194 2dit_A HIV TAT specific factor 99.3 9.6E-12 3.3E-16 103.9 10.0 79 287-386 14-103 (112)
195 3sde_A Paraspeckle component 1 99.3 4.9E-12 1.7E-16 120.1 8.9 75 286-383 20-94 (261)
196 3tyt_A Heterogeneous nuclear r 99.3 7.1E-12 2.4E-16 115.9 9.1 70 288-376 123-194 (205)
197 2g4b_A Splicing factor U2AF 65 99.3 7.9E-12 2.7E-16 109.5 8.6 74 287-384 3-87 (172)
198 2ghp_A U4/U6 snRNA-associated 99.3 1.2E-11 4.2E-16 118.2 9.9 82 287-386 116-198 (292)
199 3v4m_A Splicing factor U2AF 65 99.3 1.4E-11 4.7E-16 102.7 8.4 83 287-384 4-96 (105)
200 2d9o_A DNAJ (HSP40) homolog, s 99.2 4.8E-11 1.6E-15 98.9 11.4 69 298-390 27-95 (100)
201 2yh0_A Splicing factor U2AF 65 99.2 1.1E-11 3.9E-16 110.9 7.8 75 287-385 3-88 (198)
202 1jmt_A Splicing factor U2AF 35 99.2 8.8E-12 3E-16 103.6 5.4 72 293-382 20-103 (104)
203 1fje_B Nucleolin RBD12, protei 99.2 2.9E-12 9.9E-17 113.0 2.5 81 286-385 11-91 (175)
204 3ue2_A Poly(U)-binding-splicin 99.2 3.1E-11 1.1E-15 102.9 7.6 85 286-383 18-107 (118)
205 3tht_A Alkylated DNA repair pr 99.2 4E-11 1.4E-15 119.9 7.7 64 287-373 17-82 (345)
206 3s6e_A RNA-binding protein 39; 99.1 1E-10 3.6E-15 99.1 8.1 76 287-383 6-91 (114)
207 1owx_A Lupus LA protein, SS-B, 98.9 3.4E-09 1.2E-13 91.0 8.7 75 287-384 17-95 (121)
208 2dnr_A Synaptojanin-1; RRM dom 98.8 8.4E-09 2.9E-13 84.2 6.7 76 288-389 7-90 (91)
209 3dxb_A Thioredoxin N-terminall 98.6 6.2E-08 2.1E-12 89.5 7.8 71 300-383 141-211 (222)
210 1ufw_A Synaptojanin 2; RNP dom 98.5 1.4E-07 4.6E-12 77.5 4.9 70 288-383 15-93 (95)
211 2l9w_A U4/U6 snRNA-associated- 97.8 5.2E-05 1.8E-09 63.8 7.5 72 287-381 20-96 (117)
212 2dhx_A Poly (ADP-ribose) polym 96.7 0.0066 2.3E-07 50.4 8.8 69 287-381 7-80 (104)
213 1whv_A Poly(A)-specific ribonu 96.4 0.0059 2E-07 50.3 6.2 64 290-383 18-81 (100)
214 3pq1_A Poly(A) RNA polymerase; 96.4 0.0014 4.7E-08 67.8 2.8 60 283-365 48-107 (464)
215 1wwh_A Nucleoporin 35, nucleop 96.3 0.014 4.7E-07 49.7 8.0 63 286-373 22-84 (119)
216 1wey_A Calcipressin 1; structu 95.9 0.013 4.6E-07 48.6 6.0 73 288-383 5-82 (104)
217 1uw4_A UPF3X; nonsense mediate 95.8 0.021 7.2E-07 46.2 6.8 70 289-373 2-71 (91)
218 3ctr_A Poly(A)-specific ribonu 95.8 0.011 3.8E-07 48.7 5.0 55 290-369 7-61 (101)
219 2kn4_A Immunoglobulin G-bindin 94.8 0.024 8.3E-07 48.7 4.4 25 347-371 13-37 (158)
220 2i2y_A Fusion protein consists 93.1 0.034 1.2E-06 47.5 2.0 37 347-384 13-50 (150)
221 3p3d_A Nucleoporin 53; structu 92.2 0.13 4.3E-06 44.5 4.3 80 289-374 8-88 (132)
222 2l08_A Regulator of nonsense t 92.2 0.16 5.4E-06 41.6 4.7 70 288-372 9-78 (97)
223 3d45_A Poly(A)-specific ribonu 87.9 1 3.5E-05 46.8 7.7 62 291-381 442-503 (507)
224 2v8f_C MDIA1, profilin IIA; al 86.2 0.49 1.7E-05 29.0 2.4 8 80-87 5-12 (26)
225 1jh4_B PAIP1, polyadenylate-bi 76.8 1.2 4E-05 27.5 1.7 17 37-53 3-19 (26)
226 3htx_A HEN1; HEN1, small RNA m 76.3 1.4 4.8E-05 48.9 3.3 89 192-281 102-209 (950)
227 4f25_A Polyadenylate-binding p 76.2 1.1 3.7E-05 36.4 1.9 18 287-304 96-113 (115)
228 2l4h_A Calcium and integrin-bi 74.8 0.54 1.8E-05 42.2 -0.3 46 192-239 30-83 (214)
229 1i4w_A Mitochondrial replicati 70.6 4.4 0.00015 40.1 5.0 23 289-311 143-165 (353)
230 1wfx_A Probable RNA 2'-phospho 68.3 2.3 8E-05 38.5 2.3 49 224-275 22-74 (186)
231 4ec6_A Putative uncharacterize 62.8 1 3.5E-05 39.8 -1.1 8 205-212 65-72 (161)
232 3tla_A MCCF; serine protease, 58.5 2 7E-05 42.8 0.0 11 196-206 61-71 (371)
233 3fwy_A Light-independent proto 56.4 2.3 8E-05 41.1 0.0 9 305-313 236-244 (314)
234 2yjp_A Putative ABC transporte 53.8 2.7 9.3E-05 38.7 0.0 13 192-204 79-91 (291)
235 3na8_A Putative dihydrodipicol 53.1 19 0.00067 34.6 6.0 33 288-320 150-186 (315)
236 3uau_A JLPA, surface-exposed l 52.9 2.9 9.8E-05 40.2 0.0 8 362-369 309-316 (379)
237 3lqv_A PRE-mRNA branch site pr 47.5 6.8 0.00023 31.1 1.4 21 294-314 89-109 (115)
238 3fry_A Probable copper-exporti 47.3 66 0.0023 22.8 6.9 56 287-366 5-60 (73)
239 1d1d_A Protein (capsid protein 46.0 6.3 0.00022 37.5 1.2 21 188-208 31-51 (262)
240 3tla_A MCCF; serine protease, 43.1 5.1 0.00017 39.9 0.0 7 290-296 266-272 (371)
241 2es4_D Lipase chaperone; prote 42.9 5.1 0.00017 39.4 0.0 10 201-210 85-94 (332)
242 2qrj_A Saccharopine dehydrogen 41.9 11 0.00038 37.9 2.3 16 189-204 38-53 (394)
243 3uau_A JLPA, surface-exposed l 40.4 5.9 0.0002 38.0 0.0 7 192-198 28-34 (379)
244 2yln_A Putative ABC transporte 40.4 5.9 0.0002 36.3 0.0 12 192-203 81-92 (283)
245 4grv_A Neurotensin receptor ty 38.3 6.7 0.00023 39.5 0.0 7 132-138 495-501 (510)
246 4faj_A PRGZ; substrate binding 37.9 6.8 0.00023 38.0 0.0 10 304-313 218-227 (564)
247 1uoz_A Putative cellulase; hyd 37.7 7.5 0.00026 38.0 0.3 26 288-313 173-199 (315)
248 2c0d_A Thioredoxin peroxidase 37.7 6.9 0.00024 35.5 0.0 13 356-368 171-183 (221)
249 3jrx_A Acetyl-COA carboxylase 36.5 7.4 0.00025 41.1 0.0 15 39-53 448-464 (587)
250 3lpe_A Putative transcription 35.6 68 0.0023 25.1 5.6 22 347-368 50-71 (92)
251 3gru_A Dimethyladenosine trans 35.3 6.6 0.00022 37.7 -0.6 21 290-310 116-136 (295)
252 4axs_A Carbamate kinase; oxido 34.7 8.2 0.00028 37.9 0.0 14 135-148 3-16 (332)
253 3odm_A Pepcase, PEPC, phosphoe 34.6 8.3 0.00028 40.4 0.0 12 375-386 253-264 (560)
254 3b9f_I Protein C inhibitor; mi 32.7 9.3 0.00032 38.0 0.0 13 195-207 74-86 (395)
255 2qrj_A Saccharopine dehydrogen 32.0 9.7 0.00033 38.3 0.0 21 184-205 59-79 (394)
256 3ied_A Heat shock protein; HSP 31.9 22 0.00077 33.9 2.5 24 287-310 128-151 (272)
257 2es4_D Lipase chaperone; prote 31.7 9.9 0.00034 37.4 0.0 10 200-209 103-112 (332)
258 3cio_A ETK, tyrosine-protein k 31.5 10 0.00034 36.1 0.0 16 355-370 249-264 (299)
259 3etc_A AMP-binding protein; ad 31.0 10 0.00035 39.1 0.0 9 231-239 138-146 (580)
260 4b1m_A Levanase; hydrolase, CB 31.0 10 0.00035 33.5 0.0 8 313-320 131-138 (185)
261 1jr2_A Uroporphyrinogen-III sy 30.8 10 0.00036 35.4 0.0 36 349-384 211-247 (286)
262 2xci_A KDO-transferase, 3-deox 30.7 11 0.00036 36.7 0.0 14 356-369 208-221 (374)
263 3pnr_B Pbicp-C; immunoglobulin 29.7 11 0.00038 33.1 0.0 8 348-355 159-166 (187)
264 2d2a_A SUFA protein; iron-sulf 29.7 11 0.00038 32.5 0.0 14 192-205 42-55 (145)
265 1k8w_A TRNA pseudouridine synt 29.5 11 0.00039 36.9 0.0 14 191-204 35-48 (327)
266 4e8u_A Putative uncharacterize 29.4 1.3E+02 0.0045 26.7 6.9 49 289-357 13-72 (172)
267 1jgn_B PAIP2, polyadenylate-bi 29.3 31 0.0011 20.9 1.9 16 36-51 2-17 (26)
268 4a4j_A Pacszia, cation-transpo 29.1 1.4E+02 0.0047 20.4 6.9 33 289-321 4-36 (69)
269 2c07_A 3-oxoacyl-(acyl-carrier 28.2 12 0.00042 34.5 0.0 14 354-367 251-264 (285)
270 4faj_A PRGZ; substrate binding 28.2 12 0.00042 36.2 0.0 6 351-356 386-391 (564)
271 3tut_A RNA 3'-terminal phospha 27.8 13 0.00043 37.0 0.0 75 295-369 145-234 (358)
272 2l72_A Tgadf, actin depolymeri 27.5 13 0.00044 31.7 0.0 14 288-301 88-101 (139)
273 3b0g_A NII3, nitrite reductase 27.5 13 0.00044 39.2 0.0 15 349-363 303-317 (591)
274 3rce_A Oligosaccharide transfe 27.5 13 0.00044 40.3 0.0 10 131-140 715-724 (724)
275 2apo_A Probable tRNA pseudouri 27.4 13 0.00044 36.9 0.0 12 194-205 79-90 (357)
276 2oar_A Large-conductance mecha 27.4 13 0.00044 33.3 0.0 9 303-311 138-146 (174)
277 1uoz_A Putative cellulase; hyd 27.1 15 0.0005 36.0 0.3 21 303-323 159-179 (315)
278 3dxs_X Copper-transporting ATP 26.6 1.6E+02 0.0056 20.4 8.2 57 288-367 3-63 (74)
279 4e4j_A Arginine deiminase; L-a 26.4 14 0.00047 37.2 0.0 20 294-313 252-274 (433)
280 2px7_A 2-C-methyl-D-erythritol 26.3 14 0.00048 33.4 0.0 10 302-311 124-133 (236)
281 2r9r_B Paddle chimera voltage 26.0 14 0.00049 38.1 0.0 8 215-222 98-105 (514)
282 2h2m_A Protein MURR1, COMM dom 26.0 21 0.0007 29.5 1.0 38 203-246 20-58 (108)
283 1jxh_A Phosphomethylpyrimidine 25.3 15 0.00051 34.3 0.0 12 128-141 1-12 (288)
284 1qwz_A NPQTN specific sortase 24.4 23 0.00079 32.9 1.1 10 131-140 2-11 (235)
285 3tcm_A Alanine aminotransferas 24.4 16 0.00054 36.9 0.0 20 301-320 255-277 (500)
286 3odm_A Pepcase, PEPC, phosphoe 24.4 16 0.00054 38.3 0.0 12 353-364 186-197 (560)
287 1wue_A Mandelate racemase/muco 24.3 16 0.00055 35.9 0.0 10 131-140 2-11 (386)
288 3cio_A ETK, tyrosine-protein k 24.2 16 0.00055 34.6 0.0 8 261-268 135-142 (299)
289 4fl4_A Glycoside hydrolase fam 24.0 16 0.00056 29.0 0.0 10 226-235 61-70 (88)
290 1wuf_A Hypothetical protein LI 23.8 17 0.00057 36.0 0.0 10 131-140 2-11 (393)
291 1svj_A Potassium-transporting 23.7 17 0.00057 31.6 0.0 15 192-206 32-46 (156)
292 3tcm_A Alanine aminotransferas 23.3 19 0.00064 36.3 0.3 27 299-325 218-248 (500)
293 3b9f_I Protein C inhibitor; mi 23.3 17 0.00059 36.0 0.0 9 313-321 217-225 (395)
294 2bu3_A ALR0975 protein; phytoc 23.2 17 0.00059 34.4 0.0 10 249-258 135-144 (254)
295 2l4h_A Calcium and integrin-bi 23.0 18 0.0006 32.1 0.0 23 218-240 94-117 (214)
296 4gfq_A Ribosome-recycling fact 21.8 13 0.00043 34.3 -1.3 28 250-277 99-127 (209)
297 3oti_A CALG3; calicheamicin, T 21.7 19 0.00066 34.5 0.0 11 347-357 232-242 (398)
298 2zyd_A 6-phosphogluconate dehy 21.6 20 0.00067 36.6 0.0 12 128-141 1-12 (480)
299 2wkj_A N-acetylneuraminate lya 21.5 1.3E+02 0.0045 28.4 5.9 31 289-320 139-173 (303)
300 3k9f_C DNA topoisomerase 4 sub 20.6 21 0.00072 34.0 0.0 16 352-367 227-242 (268)
301 1c07_A Protein (epidermal grow 20.6 25 0.00084 27.1 0.4 21 220-240 15-35 (95)
302 2pi2_E Replication protein A 1 20.4 21 0.00073 30.7 0.0 22 347-368 101-128 (142)
303 3k9f_C DNA topoisomerase 4 sub 20.4 21 0.00073 34.0 0.0 13 355-367 180-192 (268)
304 3pm8_A PFCDPK2, calcium-depend 20.3 13 0.00043 32.4 -1.5 23 218-240 60-82 (197)
305 2oxn_A Beta-hexosaminidase; TI 20.2 24 0.00082 34.6 0.3 10 131-140 331-340 (340)
No 1
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=100.00 E-value=2.3e-38 Score=292.25 Aligned_cols=175 Identities=25% Similarity=0.370 Sum_probs=150.4
Q ss_pred CCCChHHHHHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhcc--ccceeecc
Q 015515 191 GGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS--SKLVVSED 268 (405)
Q Consensus 191 ~~~~~e~~~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S--~~LeVsed 268 (405)
..-.++++++|++||||||||+||.+|.||+++|.++ +|||+|.+|++|+||++|+.|.+.|++||+.| ..|+++++
T Consensus 6 ~~~~~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~-~g~V~l~~i~sF~r~k~l~~d~~~I~~Al~~S~~~~lev~ed 84 (193)
T 2voo_A 6 NEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISED 84 (193)
T ss_dssp ---CHHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHT-TTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTT
T ss_pred cCCcHHHHHHHHHHhheecchhhcccCHHHHHHhccc-CCcEEeHHHhhhhHHHHhcCCHHHHHHHHhhcccceEEEecc
Confidence 3445788999999999999999999999999998766 99999999999999999999999999999999 89999999
Q ss_pred ccccccCC--CCcch---hhhhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcc
Q 015515 269 GKKIKRQN--PLTES---DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGML 343 (405)
Q Consensus 269 g~kVRR~~--Pl~e~---~~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~ 343 (405)
+.+|||.. |+++. ..++...++|||+|||.++|+++|+++|+.||.|..|+|+++.+ +
T Consensus 85 ~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~---------------- 147 (193)
T 2voo_A 85 KTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-K---------------- 147 (193)
T ss_dssp SSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-C----------------
T ss_pred cceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-C----------------
Confidence 99999984 33332 23456789999999999999999999999999999999987642 1
Q ss_pred cCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEcccC
Q 015515 344 FSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 344 ~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~glkV~ll~~~ 385 (405)
..+|||||+|++.++|++|++.++. .+.++.|+|......
T Consensus 148 -~~kG~aFVeF~~~e~A~~A~~~~~~-~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 148 -AFKGSIFVVFDSIESAKKFVETPGQ-KYKETDLLILFKDDY 187 (193)
T ss_dssp -CEEEEEEEEESSHHHHHHHHHCTTC-EETTEECEEEETTTC
T ss_pred -CcccEEEEEECCHHHHHHHHHhCCC-eECCEEEEEEEhHHH
Confidence 1389999999999999999987664 666777888865544
No 2
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=99.95 E-value=6.2e-29 Score=204.34 Aligned_cols=89 Identities=35% Similarity=0.610 Sum_probs=85.8
Q ss_pred CCCChHHHHHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeecccc
Q 015515 191 GGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGK 270 (405)
Q Consensus 191 ~~~~~e~~~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsedg~ 270 (405)
..++++++++|++||||||||+||.+|.||+++|.++.||||+|++|++|+|||+|+.|.+.|++||+.|..|+|++||+
T Consensus 4 ~~~~~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~d~~~i~~al~~S~~lev~edg~ 83 (92)
T 1s29_A 4 MPLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDGL 83 (92)
T ss_dssp SCCCHHHHHHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTSS
T ss_pred CCCCHHHHHHHHHHHHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcCCHHHHHHHHhhCCeEEEeCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCc
Q 015515 271 KIKRQNPLT 279 (405)
Q Consensus 271 kVRR~~Pl~ 279 (405)
+|||+.|++
T Consensus 84 ~VRR~~PlP 92 (92)
T 1s29_A 84 MVRRRDPLP 92 (92)
T ss_dssp EEEESSCCC
T ss_pred EEeCCCCCC
Confidence 999999875
No 3
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=99.92 E-value=1.4e-26 Score=193.01 Aligned_cols=86 Identities=28% Similarity=0.418 Sum_probs=80.7
Q ss_pred CCChHHHHHHhhcccccccCCCCCCCHHHHhhhcCCCCCceecccccchhhhHhhhcCHHHHHHHhhccccceeeccccc
Q 015515 192 GLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKK 271 (405)
Q Consensus 192 ~~~~e~~~kI~kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sFkRmk~Lt~d~~~I~eAL~~S~~LeVsedg~k 271 (405)
..+++++++|++||||||||+||.+|.||+++| +.||||+|++|++|+|||+|+.|++.|++||+.|..|+|++||++
T Consensus 9 ~~~~~l~~~I~~QvEyYFSd~NL~~D~fL~~~m--d~~G~Vpl~~iasF~r~k~lt~d~~~i~~al~~S~~levsedg~k 86 (101)
T 2cqk_A 9 VSTEDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEK 86 (101)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHHHCHHHHHHS--CTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSSSEEECSSSSE
T ss_pred CCHHHHHHHHHHHHHhhcchhhhccCHHHHHhh--hcCCCEEhHHHhCChHHHHHcCCHHHHHHHHHhCCcEEEcCCCCe
Confidence 345778899999999999999999999999996 689999999999999999999999999999999999999999999
Q ss_pred cccCCCCc
Q 015515 272 IKRQNPLT 279 (405)
Q Consensus 272 VRR~~Pl~ 279 (405)
|||+.+++
T Consensus 87 VRr~~~~~ 94 (101)
T 2cqk_A 87 VRPSHKRC 94 (101)
T ss_dssp EEECCSCC
T ss_pred eeeCCCCC
Confidence 99997654
No 4
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=7.9e-18 Score=145.29 Aligned_cols=90 Identities=20% Similarity=0.280 Sum_probs=78.7
Q ss_pred hhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
....++|||+|||.++|+++|+++|+.||.|+.|+|++++.+++ .+|||||+|++.++|++|+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~ 101 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQ-----------------SRGYGFVKFQSGSSAQQAI 101 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTE-----------------EEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCC-----------------cceEEEEEECCHHHHHHHH
Confidence 34678999999999999999999999999999999987754322 2899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEcccCCCCCCC
Q 015515 365 AELNDEGNWRSGLRVRLMLRRGSKPAQ 391 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~~~~~K~~~ 391 (405)
+.|++..++++.|+|.+...+..+.+.
T Consensus 102 ~~l~g~~~~g~~l~v~~a~~~~~~~~~ 128 (139)
T 1u6f_A 102 AGLNGFNILNKRLKVALAASGHQRPGI 128 (139)
T ss_dssp HHTTTEECSSCEEEEEESSCCCCCCCS
T ss_pred HHhCCCEECCeEEEEEECCCCCCCCCC
Confidence 999999999999999998877666443
No 5
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.7e-17 Score=131.80 Aligned_cols=85 Identities=21% Similarity=0.207 Sum_probs=75.5
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|++.+++.+++ .+|||||+|++.++|++|++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGR-----------------SKGYGFITFSDSECARRALEQ 66 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCC-----------------CCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCc-----------------eeeEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987754332 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~K 388 (405)
|++..+.++.|+|.++..+...
T Consensus 67 l~g~~~~g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 67 LNGFELAGRPMRVGHVTERLDG 88 (95)
T ss_dssp HTTCCSSSSCCEEEESSCCCCC
T ss_pred hCCCeeCCcEEEEEEcccccCC
Confidence 9999999999999998766554
No 6
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=136.73 Aligned_cols=80 Identities=24% Similarity=0.350 Sum_probs=72.1
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
+.++|||+|||.++|+++|+++|++||.|..|+|.+++.++. .+|||||+|++.++|++|++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGH-----------------SLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCc-----------------ccccEEEEECCHHHHHHHHHH
Confidence 467899999999999999999999999999999988765432 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEcc
Q 015515 367 LNDEGNWRSGLRVRLML 383 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~ 383 (405)
||+..+.++.|+|.++.
T Consensus 81 lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 81 LNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp HTTCEETTEECEEEECC
T ss_pred hCCCEECCEEEEEEEee
Confidence 99999988889998763
No 7
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.7e-17 Score=132.50 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=75.4
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|+|++++.++. .+|||||+|++.++|++|++.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQR-----------------SRGFGFVTFENIDDAKDAMMA 73 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCS-----------------CCSEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCC-----------------cccEEEEEECCHHHHHHHHHH
Confidence 568999999999999999999999999999999987654322 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~K 388 (405)
|++..+.++.|+|.+...+...
T Consensus 74 l~g~~~~g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 74 MNGKSVDGRQIRVDQAGKSSDN 95 (102)
T ss_dssp HTTCCTTSCCCEEEEEECCCCC
T ss_pred hCCCEECCeEEEEEECCCCCCC
Confidence 9999999999999998766554
No 8
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=7.7e-17 Score=136.22 Aligned_cols=87 Identities=13% Similarity=0.200 Sum_probs=76.6
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|+.|+|.+++ +++ .+|||||+|++.++|++|++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~-----------------~~g~afV~F~~~~~A~~Ai~ 66 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSK-----------------SRGFAFITFENPADAKNAAK 66 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTT-----------------CCCEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCC-----------------cccEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999998765 221 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSKPA 390 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K~~ 390 (405)
.|++..++++.|+|.++..+..+.+
T Consensus 67 ~l~g~~~~g~~l~V~~a~~~~~~~~ 91 (116)
T 2fy1_A 67 DMNGKSLHGKAIKVEQAKKPSFQSG 91 (116)
T ss_dssp HCSSCBCSSSBCEEEECCCSSCSSS
T ss_pred HhCCCEECCEEEEEEECCCCCCCCC
Confidence 9999999999999999987665543
No 9
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7.8e-17 Score=131.18 Aligned_cols=86 Identities=15% Similarity=0.232 Sum_probs=75.4
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|++++.+++ .+|||||+|++.++|++|++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR-----------------PRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCS-----------------CCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCC-----------------CCceEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999987654332 38999999999999999998
Q ss_pred HHcCCCCCCCceEEEEcccCCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSKP 389 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K~ 389 (405)
|++..++++.|+|.+...+..+.
T Consensus 71 -~~~~~~~g~~l~V~~a~~~~~~~ 93 (99)
T 2dgs_A 71 -MHFHDIMGKKVEVKRAEPRDSKS 93 (99)
T ss_dssp -HCCCBSSSCBCEEEECCCCCCCC
T ss_pred -hCCCEECCeEEEEEECCCCcccC
Confidence 99999989999999988665553
No 10
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.71 E-value=2.9e-17 Score=144.78 Aligned_cols=87 Identities=22% Similarity=0.145 Sum_probs=76.3
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|+.|+|++++.++. .+|||||+|++.++|++||+.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKT-----------------ACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHHHH
Confidence 568999999999999999999999999999999987754332 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCCCCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGSKPA 390 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~K~~ 390 (405)
|++..+.++.|+|.++..+..+.+
T Consensus 101 l~g~~~~g~~l~V~~a~~~~~~~~ 124 (156)
T 1h2v_Z 101 INGTRLDDRIIRTDWDAGFKEGRQ 124 (156)
T ss_dssp TTTSEETTEECEEEEESCCCTTCC
T ss_pred hCCCEECCeEEEEEECCCCCCcCC
Confidence 999999888999999876554443
No 11
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=4.8e-17 Score=138.10 Aligned_cols=89 Identities=22% Similarity=0.340 Sum_probs=77.3
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++.++. .+|||||+|++.++|++|++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~ 82 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGY-----------------LKGYTLVEYETYKEAQAAME 82 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSS-----------------BCSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHHH
Confidence 3578999999999999999999999999999999987654322 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSKPAQ 391 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K~~~ 391 (405)
.|++..+++..|+|.++..+..+.++
T Consensus 83 ~l~g~~~~g~~l~v~~a~~~~~~~~~ 108 (126)
T 3ex7_B 83 GLNGQDLMGQPISVDWCFVRGPPKGK 108 (126)
T ss_dssp HHTTCBSSSSBCEEEESEESSSCCC-
T ss_pred HhCCCeeCCeEEEEEEecCCCCCCCC
Confidence 99999999999999999877655443
No 12
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8e-17 Score=130.93 Aligned_cols=86 Identities=24% Similarity=0.187 Sum_probs=75.6
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++.++. .+|||||+|++.++|++|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~ 68 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKK-----------------PKGFAFVTFMFPEHAVKAYA 68 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCC-----------------CCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCC-----------------cCeEEEEEECCHHHHHHHHH
Confidence 3578999999999999999999999999999999987653322 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K 388 (405)
.|++..+.++.|+|.+...+..+
T Consensus 69 ~l~g~~~~g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 69 EVDGQVFQGRMLHVLPSTIKKEA 91 (99)
T ss_dssp HTTTEESSSCEEEEEECCCCSTT
T ss_pred HhCCCEECCcEEEEEEcCCCccc
Confidence 99999988888999988776554
No 13
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.5e-17 Score=132.19 Aligned_cols=85 Identities=22% Similarity=0.297 Sum_probs=74.5
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEE-EEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTI-RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~V-ri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
..++|||+|||.++|+++|+++|+.||.|..| +|.+++.++. .+|||||+|++.++|++|++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~A~~ 66 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGN-----------------SKGYAFINFASFDASDAAIE 66 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCS-----------------CCSEEEEEBSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCC-----------------cCeEEEEEECCHHHHHHHHH
Confidence 46899999999999999999999999999999 9987654322 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K 388 (405)
.|++..++++.|+|.+...+..+
T Consensus 67 ~l~g~~~~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 67 AMNGQYLCNRPITVSYAFKKDSK 89 (96)
T ss_dssp TTTTCEETTEECEEEESCCCCCC
T ss_pred HcCCCEECCEEEEEEEecccCCC
Confidence 99999988888999988765544
No 14
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.70 E-value=9.3e-17 Score=132.13 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=74.7
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|++||.|..|+|++++.+++ .+|||||+|++.++|++|++
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~A~~ 73 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGM-----------------HKGCAFLTYCERESALKAQS 73 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCS-----------------CCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCC-----------------cceEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999987654332 38999999999999999999
Q ss_pred HHcCCCC---CCCceEEEEcccCCCC
Q 015515 366 ELNDEGN---WRSGLRVRLMLRRGSK 388 (405)
Q Consensus 366 ~ln~~~~---~~~glkV~ll~~~~~K 388 (405)
.|++..+ +++.|+|.+...+..+
T Consensus 74 ~l~g~~~~~~~g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 74 ALHEQKTLPGMNRPIQVKPADSESRG 99 (106)
T ss_dssp HHTTTCCCTTCSSCCEEEECCCCSCC
T ss_pred HhcCCcccCCCCceEEEEECCccccc
Confidence 9999876 6778999988765544
No 15
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.3e-17 Score=132.22 Aligned_cols=85 Identities=22% Similarity=0.211 Sum_probs=75.0
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|+|.+++.++. .+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQ-----------------HQGYGFVEFLSEEDADYAIKI 76 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCS-----------------BCSCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc-----------------CCcEEEEEECCHHHHHHHHHH
Confidence 568999999999999999999999999999999987653321 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~K 388 (405)
|++..+.++.|+|.+...+..+
T Consensus 77 l~g~~~~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 77 MDMIKLYGKPIRVNKASAHNKN 98 (105)
T ss_dssp SSSCBCSSCBCEEEETTTTSCC
T ss_pred hCCCeECCeEEEEEECCCCCcC
Confidence 9999999999999988766554
No 16
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.2e-17 Score=132.78 Aligned_cols=86 Identities=26% Similarity=0.317 Sum_probs=75.6
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|+|.+++.+++ .+|||||+|++.++|++|++.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEK-----------------HRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCC-----------------CSSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCC-----------------cceEEEEEECCHHHHHHHHHH
Confidence 568999999999999999999999999999999987654322 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCCCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGSKP 389 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~K~ 389 (405)
|++..++++.|+|.+...+..+.
T Consensus 74 l~g~~~~g~~l~V~~a~~~~~~~ 96 (102)
T 2cqb_A 74 MNESELFGRTIRVNLAKPMRIKE 96 (102)
T ss_dssp HTTEEETTEEEEEEECCCCCCCC
T ss_pred hCCCEECCcEEEEEeCCCCCCCC
Confidence 99999988889999887665553
No 17
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.69 E-value=6.9e-17 Score=135.77 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=73.5
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+||++++|+++|+++|++||.|+.|+|.+++.+++ .||||||+|++.++|++|++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~-----------------~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRK-----------------HLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCc-----------------eeeEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999988765433 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEccc
Q 015515 367 LNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~ 384 (405)
||+..+.++.|+|.++..
T Consensus 68 lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 68 LHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp HTTCEETTEECEEEECST
T ss_pred hCCCEECCeEEEEEECCC
Confidence 999999999999998754
No 18
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=131.10 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=74.6
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|+|.+++.++. .+|||||+|++.++|++|++.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKA-----------------PRGFAFVRFHDRRDAQDAEAA 74 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCS-----------------BCSCEEEEESSSSHHHHHHHH
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCC-----------------CCeEEEEEECCHHHHHHHHHH
Confidence 568999999999999999999999999999999987654322 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~K 388 (405)
|++..+.++.|+|.++.....+
T Consensus 75 l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dnm_A 75 MDGAELDGRELRVQVARYGRRD 96 (103)
T ss_dssp HSSCCBTTBCCEEEECSSCCSC
T ss_pred cCCCEECCcEEEEEECCcCCCC
Confidence 9999999999999988754443
No 19
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.4e-16 Score=129.64 Aligned_cols=86 Identities=19% Similarity=0.289 Sum_probs=74.8
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecC-CCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLP-QTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~p-k~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|+++ +.++. .+|||||+|++.++|++|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~ 75 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGA-----------------HRGFGFVDFITKQDAKKAF 75 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCS-----------------SCSEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCC-----------------cCceEEEEECCHHHHHHHH
Confidence 45789999999999999999999999999999999766 33221 3899999999999999999
Q ss_pred HHH-cCCCCCCCceEEEEcccCCCC
Q 015515 365 AEL-NDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 365 ~~l-n~~~~~~~glkV~ll~~~~~K 388 (405)
+.| ++..+.++.|+|.+...+...
T Consensus 76 ~~l~~~~~~~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 76 NALCHSTHLYGRRLVLEWADSEVTV 100 (107)
T ss_dssp HHHHTCCBSSSCBCEEEECCCCCCC
T ss_pred HHhccCCeECCCEEEEEeCCCCCCC
Confidence 999 898888889999998766544
No 20
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=131.67 Aligned_cols=84 Identities=19% Similarity=0.269 Sum_probs=73.4
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCC-CCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTS-GGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s-~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
..++|||+|||.++|+++|+++|+.|| |..|+|++++.+ ++ .+|||||+|++.++|++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~- 74 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPER-----------------LKGFGYAEFEDLDSLLSAL- 74 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTS-----------------BCSCEEEEESSHHHHHHHH-
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCC-----------------cCeEEEEEECCHHHHHHHH-
Confidence 468999999999999999999999999 999999876543 21 3899999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSKP 389 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K~ 389 (405)
.|++..+.++.|+|.+...+..+.
T Consensus 75 ~l~g~~~~g~~l~V~~a~~~~~~~ 98 (104)
T 1wi8_A 75 SLNEESLGNKRIRVDVADQAQDKD 98 (104)
T ss_dssp GGGTCEETTEECEEEECCCCCCCC
T ss_pred hcCCCEeCCcEEEEEEccCCCCCC
Confidence 999999888889999887665553
No 21
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=125.78 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=71.6
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|++.+++.++. .+|||||+|++.++|++|++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGK-----------------SKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987654322 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccC
Q 015515 367 LNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~ 385 (405)
|++..++++.|+|.++..+
T Consensus 68 l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 68 MGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp HTTCEETTEECEEEEEC--
T ss_pred cCCCEECCeEEEEEecCCC
Confidence 9999998889999987654
No 22
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=129.65 Aligned_cols=85 Identities=27% Similarity=0.325 Sum_probs=75.1
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|.++ ++. .+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~-----------------~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGR-----------------SKGFGFVCFSSPEEATKAVT 73 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSS-----------------EEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCC-----------------cCEEEEEEECCHHHHHHHHH
Confidence 35789999999999999999999999999999999765 111 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSKP 389 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K~ 389 (405)
.|++..++++.|+|.+...+..+.
T Consensus 74 ~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2d9p_A 74 EMNGRIVATKPLYVALAQRKEERQ 97 (103)
T ss_dssp HHTTCBSSSSBCEEEECSSCCCCC
T ss_pred HhCCCEeCCcEEEEEEecccccCC
Confidence 999999999999999988766553
No 23
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.67 E-value=2.9e-17 Score=133.04 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=68.8
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcC-CeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG-~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
+++|||+|||.++|+++|+++|+.|| .|..|+|++++.++. .||||||+|++.++|++|++.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~-----------------~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQ-----------------SRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCC-----------------CSSEEEEECSSHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCC-----------------cCceEEEEecCHHHHHHHHHh
Confidence 46999999999999999999999999 899999988765443 389999999999999999998
Q ss_pred HcC-CCCCCCceEEEEcccC
Q 015515 367 LND-EGNWRSGLRVRLMLRR 385 (405)
Q Consensus 367 ln~-~~~~~~glkV~ll~~~ 385 (405)
+++ ..+.++.|+|.++..+
T Consensus 64 ~~~~~~~~gr~i~V~~a~~~ 83 (91)
T 2lxi_A 64 NQHSLNILGQKVSMHYSDPK 83 (91)
T ss_dssp TTTEEEETTEEEEEECCCSC
T ss_pred cCCCeEECCEEEEEEEcCCC
Confidence 754 4566777888876543
No 24
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=132.52 Aligned_cols=82 Identities=18% Similarity=0.159 Sum_probs=72.1
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|+.|+|++++.+++ .+|||||+|++.++|++|++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~Ai~ 77 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGK-----------------SRGYGFVTMADRAAAERACK 77 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCC-----------------CCSEEEEEESSHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCc-----------------cceEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999987754332 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccC
Q 015515 366 ELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~ 385 (405)
.|++ .+.++.|+|.++..+
T Consensus 78 ~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 78 DPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp CSSC-EETTEECEEEESTTT
T ss_pred hCCC-cCCCEEEEEEEcccC
Confidence 9998 677788999998654
No 25
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=131.22 Aligned_cols=80 Identities=23% Similarity=0.231 Sum_probs=70.4
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|+.|+|..++ ..+|||||+|++.++|++|++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~--------------------~~~g~afV~f~~~~~A~~A~~ 79 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR--------------------GGPPFAFVEFEDPRDAEDAVY 79 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS--------------------SSSCCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--------------------CCCcEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999995432 138899999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccC
Q 015515 366 ELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~ 385 (405)
.|++..++++.|+|.+...+
T Consensus 80 ~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 80 GRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp HHTTCEETTEECEEECCCCC
T ss_pred HcCCCEECCeEEEEEEcccC
Confidence 99999888888999887644
No 26
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.4e-16 Score=128.77 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=74.9
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++.++. .+|||||+|++.++|++|++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~ 83 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGY-----------------LKGYTLVEYETYKEAQAAME 83 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSS-----------------EEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCc-----------------eeeEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999987754332 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~ 386 (405)
.|++..++++.|+|.++..+.
T Consensus 84 ~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 84 GLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp HHTTCBSSSSBCEEEESEESS
T ss_pred HhcCCEECCcEEEEEeecCCC
Confidence 999999999999999887654
No 27
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.9e-16 Score=130.03 Aligned_cols=85 Identities=24% Similarity=0.295 Sum_probs=73.9
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|+|.+++.++. .+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEH-----------------SKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCC-----------------BCSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC-----------------CccEEEEEECCHHHHHHHHHH
Confidence 568999999999999999999999999999999987754332 289999999999999999999
Q ss_pred Hc------CCCCCCCceEEEEcccCCCC
Q 015515 367 LN------DEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 367 ln------~~~~~~~glkV~ll~~~~~K 388 (405)
|+ +..+.++.|+|.+...+..+
T Consensus 77 ~~~~~~~~~~~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 77 ASLEAEGGGLKLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp HCTTTTTCCEESSSCEEEEECCCCCCCC
T ss_pred hccccccCCcEEcCEEEEEEECCCCccC
Confidence 99 88888888888887755443
No 28
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.5e-16 Score=124.19 Aligned_cols=77 Identities=22% Similarity=0.237 Sum_probs=70.6
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|++. ||||||+|++.++|++|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~g~afV~f~~~~~A~~A~~~ 61 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------------------------KNYGFVHIEDKTAAEDAIRN 61 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999984 67999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~K 388 (405)
|++..++++.|+|.+...+...
T Consensus 62 l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 62 LHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp HTTCBCSSCBCEEECSSCCCCC
T ss_pred hcCCccCCcEEEEEECCCCCCC
Confidence 9999888899999988765554
No 29
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=132.68 Aligned_cols=86 Identities=23% Similarity=0.292 Sum_probs=74.5
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCee--------EEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVK--------TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~--------~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~ 357 (405)
...++|||+|||.++|+++|+++|+.||.|. .|+|.+++.+++ .+|||||+|++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~-----------------~~g~afV~f~~~ 75 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGK-----------------PKGDATVSYEDP 75 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCS-----------------BCSEEEEEBSSH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCC-----------------eeeEEEEEECCH
Confidence 4678999999999999999999999999999 699877654322 389999999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEcccCCCC
Q 015515 358 ELAEKAIAELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 358 E~A~kAv~~ln~~~~~~~glkV~ll~~~~~K 388 (405)
++|++|++.|++..++++.|+|.+...+..+
T Consensus 76 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 76 PTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECSSCCCCS
T ss_pred HHHHHHHHHcCCCccCCCEEEEEECCCCCCC
Confidence 9999999999999998888999887765544
No 30
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=129.81 Aligned_cols=85 Identities=26% Similarity=0.310 Sum_probs=74.7
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|+|.+++.++. .+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQ-----------------SKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCS-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCc-----------------eeeEEEEEECCHHHHHHHHHH
Confidence 568999999999999999999999999999999987754322 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~K 388 (405)
|++..++++.|+|.+...+..+
T Consensus 77 l~g~~~~g~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 77 VSGFGYDHLILNVEWAKPSTNS 98 (103)
T ss_dssp TTTCEETTEECEEEESSCCCCS
T ss_pred cCCCeeCCcEEEEEECCCCCCC
Confidence 9999988888999987655444
No 31
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.66 E-value=2.3e-16 Score=131.97 Aligned_cols=85 Identities=21% Similarity=0.332 Sum_probs=74.5
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|+|++++.+++ .+|||||+|++.++|++|++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~~ 86 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNL-----------------SKCFGFVSYDNPVSAQAAIQS 86 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCS-----------------EEEEEEEECSSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCC-----------------cCccEEEEECCHHHHHHHHHH
Confidence 568999999999999999999999999999999987754322 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~K 388 (405)
|++..+.++.|+|.+...+..+
T Consensus 87 l~g~~~~g~~l~V~~a~~~~~~ 108 (115)
T 2cpz_A 87 MNGFQIGMKRLKVQLKRSKNDS 108 (115)
T ss_dssp HTTCEETTEECEEECCCCSCCC
T ss_pred cCCCEECCEEEEEEEcCCCCcC
Confidence 9999988888999987755443
No 32
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.8e-16 Score=128.02 Aligned_cols=84 Identities=25% Similarity=0.309 Sum_probs=73.6
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|++++.. .+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-------------------~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-------------------NDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-------------------SCCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-------------------CCCEEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999999999999876321 27899999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K 388 (405)
.|++..+.++.|+|.+...+..+
T Consensus 74 ~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 74 AMNGRKILGKEVKVNWATTPSSQ 96 (103)
T ss_dssp HHTTEEETTEEEEEEECCCTTCC
T ss_pred HhCCCCcCCCeEEEEECCCCccc
Confidence 99999988888999988765443
No 33
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.66 E-value=1e-16 Score=128.87 Aligned_cols=81 Identities=16% Similarity=0.078 Sum_probs=68.1
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcC--CeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG--~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
.+|||+|||.++|+++|+++|+.|| .|..|++.+++.+++ .||||||+|++.++|++|++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~-----------------~kG~afV~f~~~~~a~~Ai~~ 64 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ-----------------SKGFALVGVGSEASSKKLMDL 64 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCC-----------------EEEEEEECC-CHHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCc-----------------cCcEEEEEECCHHHHHHHHHH
Confidence 4899999999999999999999999 999999988765432 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~ 386 (405)
||+..+.++.|+|.+.....
T Consensus 65 l~g~~~~gr~i~V~~~~~~~ 84 (90)
T 3p5t_L 65 LPKRELHGQNPVVTPSNKLE 84 (90)
T ss_dssp GGGSCSSSCCCEECCC----
T ss_pred cCCCeeCCEEEEEEECCCCc
Confidence 99999999999998876543
No 34
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.66 E-value=1.4e-16 Score=130.92 Aligned_cols=81 Identities=22% Similarity=0.245 Sum_probs=72.8
Q ss_pred cceeEEeeCCCc------cccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHH
Q 015515 287 QSRIVVAENLPE------DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (405)
Q Consensus 287 ~~rtVyV~nLP~------d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A 360 (405)
..++|||+|||. ++++++|+++|++||.|..|+|.+++.+++ .||||||+|++.++|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~-----------------~kG~afV~f~~~~~A 67 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGK-----------------TKGFLFVECGSMNDA 67 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTE-----------------ECSEEEEEESSHHHH
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCc-----------------cceEEEEEECCHHHH
Confidence 467999999999 999999999999999999999987764432 289999999999999
Q ss_pred HHHHHHHcCCCCCC-CceEEEEccc
Q 015515 361 EKAIAELNDEGNWR-SGLRVRLMLR 384 (405)
Q Consensus 361 ~kAv~~ln~~~~~~-~glkV~ll~~ 384 (405)
++|++.||+..+++ +.|+|.++..
T Consensus 68 ~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 68 KKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp HHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred HHHHHHhCCcccCCCeEEEEEECch
Confidence 99999999999998 8999998764
No 35
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=4.5e-16 Score=130.03 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=76.4
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++.++. .+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~ 75 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK-----------------SKGYGFVSFFNKWDAENAIQ 75 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCC-----------------cceEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999987754322 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSKP 389 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K~ 389 (405)
.|++..++++.|+|.+...+..+.
T Consensus 76 ~l~g~~~~g~~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 76 QMGGQWLGGRQIRTNWATRKPPAP 99 (115)
T ss_dssp HTTTCEETTEECEEEESSCCCCCS
T ss_pred HhCCCEECCEEEEEEEccCCCCCC
Confidence 999999988899999988765543
No 36
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.4e-16 Score=127.62 Aligned_cols=84 Identities=25% Similarity=0.309 Sum_probs=73.4
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++ +++ .+|||||+|++.++|++|++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~-----------------~~g~afV~f~~~~~a~~A~~ 76 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGK-----------------PKGLAYVEYENESQASQAVM 76 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSC-----------------EEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCC-----------------EEeEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999998764 221 28999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~ 387 (405)
.|++..++++.|+|.+...+..
T Consensus 77 ~l~g~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 77 KMDGMTIKENIIKVAISNSGPS 98 (100)
T ss_dssp HHTTEESSSCEEEEEECCCCSC
T ss_pred HhCCCEECCEEEEEEECCCCCC
Confidence 9999999888899988765443
No 37
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=128.35 Aligned_cols=88 Identities=26% Similarity=0.295 Sum_probs=73.9
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|+|.+++...+ .+ ..+|||||+|++.++|++|++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g-------t~-------~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAG-------VL-------LSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTC-------CE-------EEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC-------Cc-------CcccEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987643100 00 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~K 388 (405)
|++..+.++.|+|.+...+...
T Consensus 70 l~g~~~~g~~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 70 LQGHTVDGHKLEVRISERATKP 91 (98)
T ss_dssp STTCEETTEECEEECSSCSSCC
T ss_pred hCCCeeCCeEEEEEEccCCCCC
Confidence 9999988888999988765544
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.65 E-value=2.2e-16 Score=132.87 Aligned_cols=82 Identities=24% Similarity=0.278 Sum_probs=72.1
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
..+|||+|||.++|+++|+++|+.||.|..|+|++++. ..||||||+|++.++|++|++.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-------------------~~kg~afV~f~~~~~A~~Ai~~l 65 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-------------------GSKGYGFVHFETQEAAERAIEKM 65 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-------------------EEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-------------------CCCceEEEEECCHHHHHHHHHHc
Confidence 56899999999999999999999999999999987631 12899999999999999999999
Q ss_pred cCCCCCCCceEEEEcccCCCC
Q 015515 368 NDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 368 n~~~~~~~glkV~ll~~~~~K 388 (405)
++..+.++.|+|.++..+..+
T Consensus 66 ~~~~~~g~~i~V~~a~~~~~~ 86 (115)
T 4f25_A 66 NGMLLNDRKVFVGRFKSRKER 86 (115)
T ss_dssp TTCEETTEECEEEESSCCCC-
T ss_pred CCCEECCEEEEEEECCCcccc
Confidence 999998888999987765443
No 39
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.65 E-value=8.1e-16 Score=126.26 Aligned_cols=84 Identities=21% Similarity=0.308 Sum_probs=73.6
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++++++|+++|+.||.|..|+|.++++ + ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-g-----------------~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-G-----------------SSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS-S-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-----------------CcCcEEEEEeCCHHHHHHHHHH
Confidence 468999999999999999999999999999999987641 1 1389999999999999999999
Q ss_pred HcCCCCCC---CceEEEEcccCCCC
Q 015515 367 LNDEGNWR---SGLRVRLMLRRGSK 388 (405)
Q Consensus 367 ln~~~~~~---~glkV~ll~~~~~K 388 (405)
|++..+.+ +.|+|.++..+..+
T Consensus 76 l~g~~~~gg~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 76 LHGSQTMPGASSSLVVKFADTDKES 100 (105)
T ss_dssp HSSCCCCTTCSSCCEEEESCSSCCC
T ss_pred HcCCccCCCCCccEEEEECccCccc
Confidence 99988777 78999988766554
No 40
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.4e-16 Score=126.26 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=75.6
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++. ..+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-------------------~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-------------------GSKGFGFVTFENSADADRARE 73 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT-------------------TTCCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-------------------CCcEEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999986531 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSKPA 390 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K~~ 390 (405)
.|++..+.++.|+|.+...+..+..
T Consensus 74 ~l~g~~~~g~~l~v~~a~~~~~~~~ 98 (103)
T 2cq3_A 74 KLHGTVVEGRKIEVNNATARVMTNS 98 (103)
T ss_dssp HHTTCEETTEECEEEECCSSCCCCC
T ss_pred HhCCCEECCEEEEEEEcccCCCCCC
Confidence 9999999888999999887665543
No 41
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.65 E-value=4.3e-16 Score=122.25 Aligned_cols=80 Identities=15% Similarity=0.151 Sum_probs=71.3
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln 368 (405)
.+|||+|||.++++++|+++|+.||.|..|++.++..++. .+|||||+|++.++|++|++.|+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGS-----------------SRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCC-----------------EEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCC-----------------ccceEEEEECCHHHHHHHHHHhc
Confidence 5899999999999999999999999999999987754322 28999999999999999999999
Q ss_pred CCCCCCCceEEEEcccC
Q 015515 369 DEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 369 ~~~~~~~glkV~ll~~~ 385 (405)
+..+.++.|+|.+...+
T Consensus 65 g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 65 GQDLNGRPLRINWAAKL 81 (83)
T ss_dssp TCEETTEECEEEECCCC
T ss_pred CCeeCCcEEEEEecCcC
Confidence 99998888999887644
No 42
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.65 E-value=3.4e-16 Score=126.86 Aligned_cols=81 Identities=23% Similarity=0.352 Sum_probs=72.2
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
+++|||+|||.++++++|+++|+.||.|..|+|.+++.++. .+|||||+|++.++|++|++.|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGR-----------------SKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCC-----------------BCSEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCc-----------------cceEEEEEECCHHHHHHHHHHh
Confidence 57999999999999999999999999999999987654322 3899999999999999999999
Q ss_pred cCCCCCCCceEEEEcccC
Q 015515 368 NDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 368 n~~~~~~~glkV~ll~~~ 385 (405)
++..++++.|+|.+...+
T Consensus 65 ~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 65 NGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp TTCEETTEECEEEECSCS
T ss_pred CCCeECCeEEEEEEcCCC
Confidence 999998888999987654
No 43
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-16 Score=133.77 Aligned_cols=85 Identities=26% Similarity=0.279 Sum_probs=74.5
Q ss_pred hhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 015515 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (405)
Q Consensus 284 ~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (405)
++...++|||+|||.++++++|+++|+.||.|..|+|++++.++. .+|||||+|++.++|++|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A 83 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRR-----------------SKGIAYVEFCEIQSVPLA 83 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSS-----------------CCCCEEEEESCGGGHHHH
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCc-----------------cCcEEEEEeCcHHHHHHH
Confidence 445678999999999999999999999999999999987754332 289999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEcccCC
Q 015515 364 IAELNDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 364 v~~ln~~~~~~~glkV~ll~~~~ 386 (405)
+ .|++..++++.|+|.+...+.
T Consensus 84 ~-~l~g~~~~g~~l~V~~a~~~~ 105 (114)
T 2cq4_A 84 I-GLTGQRLLGVPIIVQASQAEK 105 (114)
T ss_dssp H-HHTTEEETTEEEEEEEHHHHH
T ss_pred H-HcCCCEeCCeEEEEEecCCCc
Confidence 9 999999988889999877543
No 44
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.9e-16 Score=131.54 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=72.6
Q ss_pred hhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
....++|||+|||.++|+++|+++|+.||.|..|+|.+++.+++ .+|||||+|++.++|++|+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~Ai 86 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR-----------------SRGFGFVTFSSMAEVDAAM 86 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSS-----------------CCSEEEEECSSHHHHHHHH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCC-----------------cCceEEEEeCCHHHHHHHH
Confidence 34568999999999999999999999999999999987754332 3899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEcccCCC
Q 015515 365 AELNDEGNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~~~~~ 387 (405)
+. ++..+.++.|+|.+...+..
T Consensus 87 ~~-~~~~~~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 87 AA-RPHSIDGRVVEPKRAVAREE 108 (116)
T ss_dssp TS-CSEEETTEEEEEECCSSCCC
T ss_pred Hh-CCcEECCEEEEEEECCCCcc
Confidence 98 88888788888887765543
No 45
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=3.5e-16 Score=124.32 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=71.7
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
.+.++|||+|||.++|+++|+++|+.||.|..|++.+++.+++ .+|||||+|++.++|++|+
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~a~- 65 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGH-----------------PKGFAYIEFSDKESVRTSL- 65 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSS-----------------CCEEEEEEESSTHHHHHHG-
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCC-----------------cceEEEEEECCHHHHHHHH-
Confidence 4678999999999999999999999999999999987754332 2899999999999999999
Q ss_pred HHcCCCCCCCceEEEEccc
Q 015515 366 ELNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~ 384 (405)
.|++..+.++.|+|.....
T Consensus 66 ~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 66 ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp GGTTCEETTEECEEEETTT
T ss_pred hcCCCEECCcEEEEEEccC
Confidence 9999998888888887654
No 46
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=124.82 Aligned_cols=78 Identities=27% Similarity=0.254 Sum_probs=71.0
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln 368 (405)
++|||+|||.++|+++|+++|++||.|..|++.++ .+|||||+|++.++|++|++.|+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----------------------PPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----------------------SSSEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----------------------CCCEEEEEECCHHHHHHHHHHHC
Confidence 48999999999999999999999999999999643 17899999999999999999999
Q ss_pred CCCCCCCceEEEEcccCCCC
Q 015515 369 DEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 369 ~~~~~~~glkV~ll~~~~~K 388 (405)
+..++++.|+|.+...+..+
T Consensus 59 g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 59 GKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp HSCSSSCCCEEEESSSCCCS
T ss_pred CCeECCcEEEEEEccCCCCc
Confidence 99999999999998876644
No 47
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-15 Score=127.54 Aligned_cols=79 Identities=16% Similarity=0.151 Sum_probs=69.3
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||+++++++|+++|++||.|..|+|+++ ||||||||++.++|++|++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~~ 70 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----------------------KRQALVEFENIDSAKECVTF 70 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4679999999999999999999999999999998631 78999999999999999999
Q ss_pred HcCCC--CCCCceEEEEcccCCCC
Q 015515 367 LNDEG--NWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 367 ln~~~--~~~~glkV~ll~~~~~K 388 (405)
|++.. +.++.|+|.+...+..+
T Consensus 71 l~~~~~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 71 AADVPVYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp HHHSCCBSSSSBCEEEECSSSSCC
T ss_pred hccCCceECCEEEEEEEccCcccc
Confidence 97653 67788999998766554
No 48
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.8e-17 Score=131.95 Aligned_cols=86 Identities=30% Similarity=0.359 Sum_probs=75.4
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++++++|+++|+.||.|..|++.+++.++. .+|||||+|++.++|++|++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~ 68 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGK-----------------PKGYGFCEYQDQETALSAMR 68 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTE-----------------EEEEEEEECSCHHHHHHHHH
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCc-----------------cceEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999987754321 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K 388 (405)
.|++..++++.|+|.+...+..+
T Consensus 69 ~l~g~~~~g~~l~v~~a~~~~~~ 91 (104)
T 1p1t_A 69 NLNGREFSGRALRVDNAASEKNK 91 (104)
T ss_dssp HSSSBSCSSSCBEEEETTCTTHH
T ss_pred HhCCCeeCCcEEEEEeCCCccch
Confidence 99999999999999988765443
No 49
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=1.6e-15 Score=141.41 Aligned_cols=76 Identities=25% Similarity=0.320 Sum_probs=68.4
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcC-CeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG-~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
.++|||+|||.++++++|+++|+.|| .|..|+++.. .+|||||+|++.++|++|++.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----------------------~~g~afV~f~~~~~A~~Ai~~ 208 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------------------DRKMALIQMGSVEEAVQALID 208 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----------------------STTCEEEEESSHHHHHHHHHH
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----------------------CCcEEEEEECCHHHHHHHHHH
Confidence 57999999999999999999999999 9999999531 178999999999999999999
Q ss_pred HcCCCCC-CCceEEEEcccC
Q 015515 367 LNDEGNW-RSGLRVRLMLRR 385 (405)
Q Consensus 367 ln~~~~~-~~glkV~ll~~~ 385 (405)
|++..+. ++.|+|.+...+
T Consensus 209 l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 209 LHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HTTCBSSSSCBCEEEECSSC
T ss_pred HCCCccCCCCeEEEEEecCC
Confidence 9999988 888999987643
No 50
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.64 E-value=3.1e-16 Score=123.60 Aligned_cols=79 Identities=27% Similarity=0.365 Sum_probs=70.1
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++++++|+++|+.||.|..|++.+++.++. .+|||||+|++.++|++|++.
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEK-----------------HRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTE-----------------ECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCc-----------------cccEEEEEECCHHHHHHHHHH
Confidence 568999999999999999999999999999999976643221 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEc
Q 015515 367 LNDEGNWRSGLRVRLM 382 (405)
Q Consensus 367 ln~~~~~~~glkV~ll 382 (405)
|++..+.++.|+|.++
T Consensus 69 l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 69 MNESELFGRTIRVNLA 84 (85)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred hCCCEECCcEEEEEEc
Confidence 9999998888888865
No 51
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.64 E-value=5.2e-16 Score=128.62 Aligned_cols=86 Identities=24% Similarity=0.328 Sum_probs=75.1
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++.++. .+|||||+|++.++|++|++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~Ai~ 86 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGF-----------------SKGYALVEYETHKQALAAKE 86 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSS-----------------BCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCC-----------------cceEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999977654322 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K 388 (405)
.|++..++++.|+|.+...+..+
T Consensus 87 ~l~g~~~~g~~l~V~~a~~~~~~ 109 (110)
T 1oo0_B 87 ALNGAEIMGQTIQVDWCFVKGPK 109 (110)
T ss_dssp HHTTCEETTEECEEEESEESSCC
T ss_pred HcCCCEECCcEEEEEEcccCCCC
Confidence 99999998889999988765443
No 52
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=2.6e-16 Score=124.63 Aligned_cols=83 Identities=23% Similarity=0.283 Sum_probs=71.9
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|++.+++.+++ ..+|||||+|++.++|++|++.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~----------------~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH----------------LSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEE----------------EECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCC----------------CCCcEEEEEEecHHHHHHHHHH
Confidence 468999999999999999999999999999999976643211 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccC
Q 015515 367 LNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~ 385 (405)
|++..++++.|+|.++...
T Consensus 67 l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 67 MDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp HTTCEETTEECEEEEECCC
T ss_pred cCCCeECCeEEEEEECCCC
Confidence 9999998888999987543
No 53
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.3e-16 Score=128.54 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=71.1
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|++++. +. .+|||||+|++.++|++|++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~-----------------~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KA-----------------FKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TS-----------------CCCEEEEEESSHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CC-----------------CccEEEEEECCHHHHHHHHH
Confidence 4678999999999999999999999999999999987653 21 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEccc
Q 015515 366 ELNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~ 384 (405)
+++..+.++.|+|.....
T Consensus 71 -~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 71 -TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp -SSCCCCTTTTCEEEEHHH
T ss_pred -cCCCEECCEEEEEEEchH
Confidence 898888888999987554
No 54
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7.2e-16 Score=126.35 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=73.7
Q ss_pred cceeEEeeCCCccccHHHHHHHHhh-cCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSA-VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~-fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
..++|||+|||.++|+++|+++|+. ||.|..|+|++++ ++. .+|||||+|++.++|++|++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~-----------------~~g~afV~f~~~~~a~~A~~ 69 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGV-----------------SKGYGFVKFTDELEQKRALT 69 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCC-----------------EEEEEEEEESCHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCC-----------------ccceEEEEECCHHHHHHHHH
Confidence 4689999999999999999999999 9999999998765 222 28999999999999999999
Q ss_pred HHcCCC-CCCCceEEEEcccCCCC
Q 015515 366 ELNDEG-NWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 366 ~ln~~~-~~~~glkV~ll~~~~~K 388 (405)
.|++.. +.++.|+|.+...+..+
T Consensus 70 ~l~g~~~~~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 70 ECQGAVGLGSKPVRLSVAIPKASR 93 (104)
T ss_dssp HTTTCCSSSSSCCCCCBCCCCCSC
T ss_pred HccCCcccCCEeEEEEEccCCCcC
Confidence 999988 88888999888665544
No 55
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.64 E-value=6.9e-16 Score=126.77 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=70.7
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|++. ++||||+|++.++|++|++.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------------------------KDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEeCCHHHHHHHHHH
Confidence 46899999999999999999999999999999983 56999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCCCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGSKP 389 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~K~ 389 (405)
|++..+.++.|+|.+...+..+.
T Consensus 65 l~g~~~~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 65 MNGKDLEGENIEIVFAKPPDQKR 87 (103)
T ss_dssp HTTEEETTEEEEEEECCCCCCCC
T ss_pred HCCCccCCCEEEEEEcCCCcccc
Confidence 99999888899999987765543
No 56
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=129.90 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=67.7
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCC--eeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS--VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~--V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
.-.||||+|||.++|+++|+++|++||. |..|++++++.+++ +||||||+|++.++|++|+
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~-----------------srG~aFV~f~~~~~A~~Ai 70 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQ-----------------NRGFAFVQLSSAMDASQLL 70 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSS-----------------CSSEEEEECSSSHHHHHHH
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCC-----------------CceEeEEEECCHHHHHHHH
Confidence 3469999999999999999999999995 67899988765443 3899999999999999999
Q ss_pred HHHcCCC----CCCCceEEEEcc
Q 015515 365 AELNDEG----NWRSGLRVRLML 383 (405)
Q Consensus 365 ~~ln~~~----~~~~glkV~ll~ 383 (405)
+.||+.. +.++.|+|.++.
T Consensus 71 ~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 71 QILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp HHHHSSSSCEEETTEEEEEEECC
T ss_pred HHhcCCCCCceECCEEEEEEEcc
Confidence 9999864 556678887754
No 57
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=7.2e-16 Score=125.27 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=70.0
Q ss_pred hcceeEEeeCCCc-cccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 286 LQSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 286 ~~~rtVyV~nLP~-d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
...++|||+|||. ++|+++|+++|+.||.|..|++. +|||||+|++.++|++|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A~ 62 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------------------NAFGFIQFDNPQSVRDAI 62 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------------------------TTEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------CCEEEEEECCHHHHHHHH
Confidence 3578999999998 99999999999999999999983 689999999999999999
Q ss_pred HHHcCCCCCCCceEEEEcccCCCC
Q 015515 365 AELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~~~~~K 388 (405)
+.|++..++++.|+|.+...+...
T Consensus 63 ~~l~g~~~~g~~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 63 ECESQEMNFGKKLILEVSSSNARP 86 (96)
T ss_dssp HHHTCSSCBTTTBCEEEEECCCC-
T ss_pred HHcCCCeeCCcEEEEEEcCcCCCC
Confidence 999999998999999998765443
No 58
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=6.6e-16 Score=126.73 Aligned_cols=83 Identities=18% Similarity=0.278 Sum_probs=72.4
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.|| |..|+|++++.+++ .+|||||+|++.++|++|+ .
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~-~ 74 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDK-----------------FKGFCYVEFDEVDSLKEAL-T 74 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCS-----------------EEEEEEEEESSHHHHHHHG-G
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCc-----------------cceEEEEEECCHHHHHHHH-h
Confidence 468999999999999999999999997 99999988764332 3899999999999999999 8
Q ss_pred HcCCCCCCCceEEEEcccCCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~K 388 (405)
|++..+.++.|+|.+...+..+
T Consensus 75 l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 75 YDGALLGDRSLRVDIAEGRKQD 96 (103)
T ss_dssp GTTCEETTEECEEEECCCCCCC
T ss_pred hCCCeECCeEEEEEEecCCCCC
Confidence 9999988888999988765444
No 59
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.64 E-value=5.1e-16 Score=131.36 Aligned_cols=84 Identities=21% Similarity=0.261 Sum_probs=73.1
Q ss_pred hhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 015515 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (405)
Q Consensus 284 ~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (405)
.+...++|||+|||.++|+++|+++|+.||.|..|+|.+++.++. .+|||||+|++.++|++|
T Consensus 32 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A 94 (124)
T 2jwn_A 32 KEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGH-----------------PKGYAYIEFAERNSVDAA 94 (124)
T ss_dssp HHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSS-----------------CEEEEEEEESSHHHHHHH
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCC-----------------cccEEEEEECCHHHHHHH
Confidence 445678999999999999999999999999999999987754332 389999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEcccC
Q 015515 364 IAELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 364 v~~ln~~~~~~~glkV~ll~~~ 385 (405)
+ .|++..++++.|+|.+....
T Consensus 95 ~-~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 95 V-AMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp H-TTTTCEETTEECEEEESSCC
T ss_pred H-hcCCCeECCeEEEEEECCCC
Confidence 9 79999988888888877543
No 60
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.64 E-value=8.3e-16 Score=125.26 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=71.2
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeE--------EEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--------IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~--------Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E 358 (405)
..++|||+|||.++|+++|+++|++||.|.. |++.+++.+++ .+|||||+|++.+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~-----------------~~G~afV~f~~~~ 74 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGK-----------------LKGEATVSFDDPP 74 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCS-----------------EEEEEEEEBSSHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCC-----------------eeeEEEEEECCHH
Confidence 5689999999999999999999999999999 99987754332 2899999999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEc
Q 015515 359 LAEKAIAELNDEGNWRSGLRVRLM 382 (405)
Q Consensus 359 ~A~kAv~~ln~~~~~~~glkV~ll 382 (405)
+|++|++.|++..+.++.|+|.++
T Consensus 75 ~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 75 SAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHhCCCEeCCcEEEEEec
Confidence 999999999999999999999875
No 61
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=127.13 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=73.5
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||+++|+++|+++|+.||.|..|+|.+ .|||||+|++.++|++||+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~------------------------~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR------------------------DGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET------------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec------------------------CCEEEEEECCHHHHHHHHHH
Confidence 467999999999999999999999999999999952 26999999999999999999
Q ss_pred HcCCCCCC-----CceEEEEcccCCCCCCCCCCC
Q 015515 367 LNDEGNWR-----SGLRVRLMLRRGSKPAQVKGK 395 (405)
Q Consensus 367 ln~~~~~~-----~glkV~ll~~~~~K~~~grg~ 395 (405)
||+..+.+ +.|+|.++..+.....+++++
T Consensus 70 l~g~~~~g~~~~~~~i~V~~a~~~~~~~~rsrsr 103 (108)
T 1x4c_A 70 LDNTKFRSHEGETAYIRVKVDGPRSPSYGRSRSS 103 (108)
T ss_dssp SSSEEEECTTSCEEEEEEEESSCCSCCCCCSSCC
T ss_pred HCcCCccCCcCcceEEEEEeCCCCCCCCCCCCCC
Confidence 99988877 778999888776665444443
No 62
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=8.5e-16 Score=123.56 Aligned_cols=78 Identities=26% Similarity=0.205 Sum_probs=70.2
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|++. ++||||+|++.++|++|++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------------------------~~~afV~f~~~~~a~~A~~ 62 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------------------------KDYAFVHMERAEDAVEAIR 62 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------------------------SSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------------------------CCEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999984 5699999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K 388 (405)
.|++..+.++.|+|.+...+...
T Consensus 63 ~l~g~~~~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 63 GLDNTEFQGKRMHVQLSTSRLRT 85 (92)
T ss_dssp HHTTEEETTEEEEEEESSCCCSC
T ss_pred HhCCCeeCCcEEEEEEccCCCCC
Confidence 99999988888999988755443
No 63
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5.5e-16 Score=125.94 Aligned_cols=80 Identities=14% Similarity=0.185 Sum_probs=70.9
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCee-EEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVK-TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~-~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
..++|||+|||.++++++|+++|+.||.|. .|+|++++.+++ .+|||||+|++.++|++|++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGI-----------------PAGYCFVEFADLATAEKCLH 70 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCC-----------------EEEEEEEECSCHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCC-----------------cCCEEEEEeCCHHHHHHHHH
Confidence 568999999999999999999999999999 999988764332 28999999999999999999
Q ss_pred HHcCCCCCCCc----eEEEEcc
Q 015515 366 ELNDEGNWRSG----LRVRLML 383 (405)
Q Consensus 366 ~ln~~~~~~~g----lkV~ll~ 383 (405)
.|++..+.++. |+|.++.
T Consensus 71 ~l~g~~~~g~~~~~~l~v~~a~ 92 (99)
T 2div_A 71 KINGKPLPGATPAKRFKLNYAT 92 (99)
T ss_dssp TTTTSEESSCSSCEECCEEETT
T ss_pred HHcCCccCCCCcceeEEEeecC
Confidence 99999888887 7777664
No 64
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5.5e-16 Score=124.61 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=70.4
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++++++|+++|+.||.|..|++.+++.++. .+|||||+|++.++|++|++.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRK-----------------SKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCC-----------------CTTCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCC-----------------cccEEEEEECCHHHHHHHHHH
Confidence 568999999999999999999999999999999987654322 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEc
Q 015515 367 LNDEGNWRSGLRVRLM 382 (405)
Q Consensus 367 ln~~~~~~~glkV~ll 382 (405)
|++..++++.|+|.++
T Consensus 78 l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 78 INNKQLFGRVIKASIA 93 (94)
T ss_dssp TTTEEETTEEEEEEEC
T ss_pred cCCCeeCCcEEEEEec
Confidence 9999988888888875
No 65
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=8.7e-16 Score=123.02 Aligned_cols=78 Identities=26% Similarity=0.234 Sum_probs=70.6
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|++. ++||||+|++.++|++|++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------------------------~~~afV~f~~~~~a~~A~~ 61 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------------------------KDYAFVHMEKEADAKAAIA 61 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999984 5689999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K 388 (405)
.|++..++++.|+|.+...+..+
T Consensus 62 ~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 62 QLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp HHTTCEETTEECEEEESCCCCCC
T ss_pred HhCCCEECCcEEEEEECCCCCCC
Confidence 99999998889999998766444
No 66
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.63 E-value=8.5e-16 Score=132.50 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=73.0
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|+|++++.+++ .+|||||+|++.++|++|++.
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRR-----------------SRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSC-----------------CCCEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987754332 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccC
Q 015515 367 LNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~ 385 (405)
|++..++++.|+|.+...+
T Consensus 108 lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 108 ANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp HTTCCSSSSCCEESCCSSS
T ss_pred hCCCEECCEEEEEEEecCC
Confidence 9999998888999877644
No 67
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.63 E-value=9.8e-16 Score=127.81 Aligned_cols=83 Identities=20% Similarity=0.259 Sum_probs=73.7
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|++.+++.+++ .+|||||+|++.++|++|++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~F~~~~~A~~Ai~ 86 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR-----------------SKGYGFITFSDSECAKKALE 86 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTE-----------------EEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCc-----------------cceEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999987654321 28999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccC
Q 015515 366 ELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~ 385 (405)
.|++..+.++.|+|.+...+
T Consensus 87 ~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 87 QLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp HHTTCCSSSSCCEEECSCSS
T ss_pred HcCCCEECCEEEEEEEcccC
Confidence 99999999999999987654
No 68
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.8e-16 Score=124.13 Aligned_cols=80 Identities=21% Similarity=0.172 Sum_probs=70.8
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|++.+++.++. .+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRR-----------------SRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSS-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCC-----------------cccEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987654322 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEcc
Q 015515 367 LNDEGNWRSGLRVRLML 383 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~ 383 (405)
|++..++++.|+|.+..
T Consensus 77 l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 77 ANGMELDGRRIRVSGPS 93 (95)
T ss_dssp HTTEEETTEEEEEECCS
T ss_pred hCCCEECCEEEEEEecC
Confidence 99998888888888654
No 69
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.4e-16 Score=130.80 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=68.4
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||+++|+++|+++|+.||.|++|+|+++ ||||||||++.++|++|++.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------------------kGfaFVeF~~~~~A~~Ai~~ 71 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------------------KNQAFIEMNTEEAANTMVNY 71 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999999642 78999999999999999999
Q ss_pred HcC--CCCCCCceEEEEcccCCCC
Q 015515 367 LND--EGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 367 ln~--~~~~~~glkV~ll~~~~~K 388 (405)
|++ ..+.++.|+|.+...+..+
T Consensus 72 l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 72 YTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp HTTSCCEETTEECCBCCCSSSSCC
T ss_pred hccCCceECCEEEEEEEcCCCCCC
Confidence 874 4566777888877665544
No 70
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.4e-16 Score=128.93 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=66.9
Q ss_pred cceeEEeeCCCc-cccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 287 ~~rtVyV~nLP~-d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
..++|||+|||+ ++|+++|+++|+.||.|.+|+|+++ ||||||||++.++|++|++
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----------------------INEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----------------------SSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 468999999999 9999999999999999999999632 6799999999999999999
Q ss_pred HHcCCC--CCCCceEEEEccc
Q 015515 366 ELNDEG--NWRSGLRVRLMLR 384 (405)
Q Consensus 366 ~ln~~~--~~~~glkV~ll~~ 384 (405)
.|++.. +.++.|+|.++..
T Consensus 71 ~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 71 YYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp HHHHSCCEETTEECEEEEECC
T ss_pred HHcCCCceECCcEEEEEECCC
Confidence 998654 6778899998874
No 71
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.3e-16 Score=128.78 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=72.6
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|++++.++. .+|||||+|++.++|++|++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~a~~ 76 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQ-----------------SRGFGFVKFKDPNCVGTVLA 76 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCC-----------------EEEEEEEEESSTTHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCC-----------------cceEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999987754322 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K 388 (405)
. ++..+.++.|+|.+...+..+
T Consensus 77 ~-~~~~~~g~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 77 S-RPHTLDGRNIDPKPCTPRGMQ 98 (105)
T ss_dssp H-CSEEETTEEEBCCCSCCSSCC
T ss_pred h-CCCeECCEEEEEEEccCCCCC
Confidence 9 888888877888777655444
No 72
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=124.06 Aligned_cols=79 Identities=28% Similarity=0.318 Sum_probs=71.6
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|++.++ ||||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----------------------kg~afV~f~~~~~a~~a~~~ 70 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----------------------KGFGFIRLETRTLAEIAKVE 70 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----------------------TTEEEEECSSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 5679999999999999999999999999999999632 78999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~K 388 (405)
|++..+.++.|+|++...+...
T Consensus 71 l~g~~~~g~~l~v~~a~~~~~~ 92 (99)
T 2cpj_A 71 LDNMPLRGKQLRVRFACHSASL 92 (99)
T ss_dssp HTTCCBTTBCCEEEESSCCSCC
T ss_pred hCCCEeCCceEEEEEcCCCCCC
Confidence 9999999999999998765544
No 73
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.62 E-value=1e-15 Score=127.48 Aligned_cols=76 Identities=20% Similarity=0.167 Sum_probs=67.4
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
.+++|||+|||+++|+++|+++|+.||.|.+|++++. ||||||||++.++|.+|++.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----------------------kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----------------------KRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999999999999631 78999999999999999999
Q ss_pred HcCCC--CCCCceEEEEcccC
Q 015515 367 LNDEG--NWRSGLRVRLMLRR 385 (405)
Q Consensus 367 ln~~~--~~~~glkV~ll~~~ 385 (405)
|++.. +.++.|+|.+...+
T Consensus 77 ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 77 AADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp HHHSCEEETTEEEEEEECSCS
T ss_pred hcCCCceeCCcEEEEEecccc
Confidence 99875 55777888887643
No 74
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=126.01 Aligned_cols=84 Identities=21% Similarity=0.193 Sum_probs=73.6
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|+|+++++ + ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g-----------------~~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-G-----------------KSRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-C-----------------SEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-----------------CeeeEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987642 1 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~K 388 (405)
|++..++++.|+|.+......+
T Consensus 76 l~g~~~~g~~l~v~~a~~~~~~ 97 (114)
T 2do0_A 76 FNGQLLFDRPMHVKMDERALPK 97 (114)
T ss_dssp HTTCEETTEECEEEECSCCCCC
T ss_pred hCCCEeCCCEEEEEEcccCCCC
Confidence 9999998888999988654444
No 75
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=3e-17 Score=137.81 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=75.0
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeE--------EEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--------IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~--------Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~ 357 (405)
...++|||+|||.++++++|+++|+.||.|.. |+|.+++.+++ .+|||||+|++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~-----------------~~g~afV~f~~~ 67 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGK-----------------LKGEATVSFDDP 67 (116)
Confidence 45789999999999999999999999999998 88876643322 389999999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEcccCCCCC
Q 015515 358 ELAEKAIAELNDEGNWRSGLRVRLMLRRGSKP 389 (405)
Q Consensus 358 E~A~kAv~~ln~~~~~~~glkV~ll~~~~~K~ 389 (405)
++|++|++.|++..+.++.|+|.+...+....
T Consensus 68 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 68 PSAKAAIDWFDGKEFSGNPIKVSFATRRADFN 99 (116)
Confidence 99999999999999888889999887665553
No 76
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=123.66 Aligned_cols=82 Identities=20% Similarity=0.176 Sum_probs=72.2
Q ss_pred cceeEEeeCCCccccHHHHH----HHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~----~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (405)
..++|||+|||.++++++|+ ++|++||.|..|+|.+++. . +|||||+|++.++|++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~-------------------~-rg~afV~f~~~~~A~~ 67 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD-------------------Y-QLKAVVQMENLQDAIG 67 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS-------------------T-TCCEEEEESSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC-------------------C-CeEEEEEECCHHHHHH
Confidence 45799999999999999999 9999999999999976542 1 6799999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEcccCCCC
Q 015515 363 AIAELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 363 Av~~ln~~~~~~~glkV~ll~~~~~K 388 (405)
|++.||+..+.++.|+|.++..+..+
T Consensus 68 Ai~~l~g~~~~gr~l~V~~a~~~~~~ 93 (96)
T 2dgx_A 68 AVNSLHRYKIGSKKILVSLATGASGP 93 (96)
T ss_dssp HHHHHTTEEETTEEEEEEECCCSSCC
T ss_pred HHHHhCCCEECCeEEEEEEcCCCCCC
Confidence 99999999998889999988655443
No 77
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=130.19 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=70.9
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||+++|+++|+++|+.||.|++|+|+++ ||||||||++.++|++|++.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------------------kG~AFVeF~~~e~A~~Ai~~ 86 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------------------KNQAFIEMNTEEAANTMVNY 86 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----------------------GTEEEEECSCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999999632 78999999999999999999
Q ss_pred HcC--CCCCCCceEEEEcccCCCCC
Q 015515 367 LND--EGNWRSGLRVRLMLRRGSKP 389 (405)
Q Consensus 367 ln~--~~~~~~glkV~ll~~~~~K~ 389 (405)
|++ ..+.++.|+|.+...+..+.
T Consensus 87 l~~~~~~l~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 87 YTSVTPVLRGQPIYIQFSNHKELKT 111 (119)
T ss_dssp HHHHCCCBTTBCCEEEECSSSSCCC
T ss_pred hccCCceECCeEEEEEEccCCCCCc
Confidence 984 46778889999988766663
No 78
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.62 E-value=9.7e-16 Score=123.40 Aligned_cols=80 Identities=24% Similarity=0.273 Sum_probs=70.6
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++++++|+++|+.||.|..|+|.++++ + ..+|||||+|++.++|++|++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g-----------------~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-G-----------------KPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-----------------CEEEEEEEEESSTHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-C-----------------CCceEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999987642 1 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcc
Q 015515 366 ELNDEGNWRSGLRVRLML 383 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~ 383 (405)
.|++..++++.|+|.+..
T Consensus 76 ~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 76 LLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp HHTTCEETTEECEEECCC
T ss_pred HhCCCEECCCEEEEEEcC
Confidence 999999888888888653
No 79
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=124.41 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=69.6
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++++++|+++|+.||.|..|+|.+++.+++ .+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGH-----------------SKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCS-----------------EEEEEEEEESSHHHHHHHHHS
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCC-----------------ccceEEEEECCHHHHHHHHHc
Confidence 568999999999999999999999999999999987754332 389999999999999999994
Q ss_pred HcCCCCCCCceEEEEcccCCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~K 388 (405)
+..+.++.|+|.+...+...
T Consensus 77 --~~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 77 --RHMIDGRWCDCKLPNSKQSQ 96 (103)
T ss_dssp --CEEETTEEEEEECCCTTCCC
T ss_pred --CCeeCCeEEEEEecCCCCcC
Confidence 44566677888887765444
No 80
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.62 E-value=1.7e-15 Score=121.32 Aligned_cols=82 Identities=24% Similarity=0.259 Sum_probs=71.9
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|+|.++ ++ ..+|||||+|++.++|++|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g-----------------~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NG-----------------KSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SS-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CC-----------------CcceEEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999999999999753 11 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~ 387 (405)
|++..+.++.|+|++......
T Consensus 68 l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 68 MNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp HTTCCBTTBCCCCEECSCCSS
T ss_pred hCCCEECCcEEEEEEcCCCCC
Confidence 999999888999998765443
No 81
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=6.9e-16 Score=128.94 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=75.8
Q ss_pred hcceeEEeeCCCccccHHHHH---HHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLM---KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~---~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (405)
...++|||+|||.++++++|+ ++|++||.|..|+|.+++.+++. + ..+|||||+|++.++|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~-------~-------~~~G~afV~f~~~~~A~~ 78 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGS-------Q-------GPSASAYVTYIRSEDALR 78 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSS-------S-------CCCEEEEEEESSHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCcc-------C-------CCCeEEEEEECcHHHHHH
Confidence 356799999999999999999 99999999999999876543221 0 137999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEcccCCCC
Q 015515 363 AIAELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 363 Av~~ln~~~~~~~glkV~ll~~~~~K 388 (405)
|++.||+..++++.|+|.++..+...
T Consensus 79 Ai~~lng~~~~gr~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 79 AIQCVNNVVVDGRTLKASLGTTKYCS 104 (111)
T ss_dssp HHHHHTTEEETTEEEEEESCCCCSCS
T ss_pred HHHHhCCCEECCEEEEEEeccccccc
Confidence 99999999998889999988766533
No 82
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.62 E-value=5.3e-16 Score=130.15 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=71.2
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|++||.|..|+|.+++.+++ .+|||||+|++.++|++|++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~A~~ 100 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSL-----------------SKCFGFVSFDNPDSAQVAIK 100 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSC-----------------CCCEEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCC-----------------cCcEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999999999999999987654332 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEc
Q 015515 366 ELNDEGNWRSGLRVRLM 382 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll 382 (405)
.|++..++++.|+|.+.
T Consensus 101 ~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 101 AMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp HCCCCEETTEECCEEEC
T ss_pred HcCCCEECCEEEEEEec
Confidence 99999988888888865
No 83
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.8e-15 Score=125.69 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=69.7
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||+++|+++|+++|+.||.|..|+|+++ ||||||||++.++|++|++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~~ 70 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----------------------KNQAFLELATEEAAITMVNY 70 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4679999999999999999999999999999998632 78999999999999999998
Q ss_pred Hc--CCCCCCCceEEEEcccCCCCC
Q 015515 367 LN--DEGNWRSGLRVRLMLRRGSKP 389 (405)
Q Consensus 367 ln--~~~~~~~glkV~ll~~~~~K~ 389 (405)
|+ +..+.++.|+|.+...+..+.
T Consensus 71 l~~~~~~~~Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 71 YSAVTPHLRNQPIYIQYSNHKELKT 95 (101)
T ss_dssp HHHSCCEETTEECEEEECSCSSCCC
T ss_pred hccCCceECCcEEEEEEcCcccCcC
Confidence 86 345677889999988766663
No 84
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=125.80 Aligned_cols=80 Identities=19% Similarity=0.158 Sum_probs=71.2
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|.++ +|||||+|++.++|++|++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----------------------~g~afV~f~~~~~a~~A~~ 79 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----------------------KGYSFVRFSTHESAAHAIV 79 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 45689999999999999999999999999999999642 6899999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K 388 (405)
.|++..++++.|+|.+...+...
T Consensus 80 ~l~g~~~~g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 80 SVNGTTIEGHVVKCYWGKESPDM 102 (109)
T ss_dssp HHTTCEETTEECEEECCCCCCSS
T ss_pred HcCCCEECCcEEEEEecCCCCCC
Confidence 99999988888999887655433
No 85
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.61 E-value=4.8e-16 Score=133.57 Aligned_cols=85 Identities=11% Similarity=0.138 Sum_probs=73.7
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeE--EEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~--Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (405)
...++|||+|||+++|+++|+++|+.||.|.. |+|++++.+++ .||||||+|++. +|++|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~-----------------~rG~aFV~f~~~-~a~~A 82 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQL-----------------NRGFAFIQLSTI-EAAQL 82 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSS-----------------BCSCEEEECCHH-HHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCC-----------------cceEEEEEECCH-HHHHH
Confidence 35689999999999999999999999999977 99988764432 289999999999 99999
Q ss_pred HHHHcCC----CCCCCceEEEEcccCCCC
Q 015515 364 IAELNDE----GNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 364 v~~ln~~----~~~~~glkV~ll~~~~~K 388 (405)
++.|++. .+.++.|+|.+...+..+
T Consensus 83 i~~l~g~~~~~~~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 83 LQILQALHPPLTIDGKTINVEFAKGSKRD 111 (131)
T ss_dssp HHHHTTCCCSCCGGGCCCCCEECCCSCCC
T ss_pred HHHhcCCCCCccCCCEEEEEEECCCCCCC
Confidence 9999998 888888999988765443
No 86
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.61 E-value=1.3e-15 Score=127.21 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=70.5
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++.++. .+|||||+|++.++|++|++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~-----------------~kg~afV~f~~~~~A~~Ai~ 85 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR-----------------SRGFGFVTFMDQAGVDKVLA 85 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCC-----------------CTTCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCC-----------------cCcEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999987754332 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K 388 (405)
.++ ..+.++.|+|.++..+..+
T Consensus 86 ~~~-~~l~g~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 86 QSR-HELDSKTIDPKVAFPRRAQ 107 (109)
T ss_dssp SSC-EEETTEEEEEEECCCCCCC
T ss_pred HCC-CcCCCEEEEEEEccCCCCC
Confidence 875 6677778889887755443
No 87
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=2e-15 Score=124.37 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=70.9
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|+|++++ +++ .+|||||+|++.++|++|++.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~-----------------~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGR-----------------SLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCC-----------------cceEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999998765 221 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEcc
Q 015515 367 LNDEGNWRSGLRVRLML 383 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~ 383 (405)
|++..+.++.|+|.++.
T Consensus 90 l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 90 YNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HTTCEETTEECEEEEEC
T ss_pred hCCCEeCCcEEEEEEeC
Confidence 99999988889998764
No 88
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=136.14 Aligned_cols=81 Identities=19% Similarity=0.135 Sum_probs=72.3
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcC--CeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG--~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
..++|||+|||+++|+++|+++|+.|| .|..|+|++++.+++ .||||||+|++.++|++||
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~-----------------skGfaFV~f~~~~~A~~Ai 116 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQ-----------------SKGYAEVVVASENSVHKLL 116 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCC-----------------EEEEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHH
Confidence 457999999999999999999999999 999999998865443 2899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEccc
Q 015515 365 AELNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~~ 384 (405)
+.|++..+.++.|+|.++..
T Consensus 117 ~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 117 ELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp HHSTTCEETTEECEEEECCH
T ss_pred HHcCCCEECCeEeEEEEcCC
Confidence 99999999999999998754
No 89
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=126.09 Aligned_cols=80 Identities=19% Similarity=0.195 Sum_probs=68.0
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||+++|+++|+++|+.||.| .|+|++++ +++ .||||||+|++.++|++||+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~-----------------~~G~afV~F~~~~~a~~Al~- 73 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGR-----------------VTGEADVEFATHEDAVAAMA- 73 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSC-----------------EEEEEEEECSSSHHHHHHHT-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCC-----------------EeeEEEEEECCHHHHHHHHH-
Confidence 46799999999999999999999999954 99998765 221 38999999999999999995
Q ss_pred HcCCCCCCCceEEEEcccCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~ 386 (405)
+++..+.++.|+|.+.....
T Consensus 74 ~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 74 KDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp TSSCCSSSSCCEEEEECCCC
T ss_pred hCCCeECCcEEEEEECCCCC
Confidence 79888888889998766443
No 90
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.60 E-value=1.7e-15 Score=135.02 Aligned_cols=89 Identities=24% Similarity=0.320 Sum_probs=74.6
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|++++.++. .+|||||+|.+.++|++||+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~Ai~ 132 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGF-----------------SKGYALVEYETHKQALAAKE 132 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSS-----------------EEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCc-----------------EeeEEEEEECCHHHHHHHHH
Confidence 3567999999999999999999999999999999987754332 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSKPAQ 391 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K~~~ 391 (405)
.|++..++++.|+|.+...+..+...
T Consensus 133 ~l~g~~~~g~~l~V~~a~~~~~~~~~ 158 (165)
T 1rk8_A 133 ALNGAEIMGQTIQVDWCFVKGPKRVK 158 (165)
T ss_dssp HHTTCEETTEECEEEESEECC-----
T ss_pred HhCCCEECCEEEEEEEecCCCCCCCC
Confidence 99999998889999998876665433
No 91
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=9.7e-16 Score=118.54 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=67.3
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln 368 (405)
++|||+|||.++++++|+++|++||.|..|++.+++.+++ .+|||||+|++.++|++|++.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR-----------------SRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSS-----------------CSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCC-----------------cCceEEEEEcCHHHHHHHHHhCC
Confidence 5899999999999999999999999999999987654322 38999999999999999999999
Q ss_pred CCCCCCCceEEEEc
Q 015515 369 DEGNWRSGLRVRLM 382 (405)
Q Consensus 369 ~~~~~~~glkV~ll 382 (405)
..+.++.|+|+++
T Consensus 64 -~~~~g~~l~v~~a 76 (77)
T 1uaw_A 64 -HELDSKTIDPKVA 76 (77)
T ss_dssp -CCCSSCCCEEEEC
T ss_pred -CccCCEEEEEEec
Confidence 7788888998864
No 92
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.60 E-value=2.6e-15 Score=134.52 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=69.8
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|++.+++.++. .+|||||+|++.++|.+|++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK-----------------KRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHH
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCC-----------------ccceEEEEECCHHHHHHHHH
Confidence 3458999999999999999999999999999999987754322 38999999999999999998
Q ss_pred HHcCCCCCCCceEEEEcccCCCCCCCCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSKPAQVKGK 395 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K~~~grg~ 395 (405)
. ++..+.++.|+|.++..+.....+++++
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~~~~~~~~~~ 193 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQEMASASSSQ 193 (196)
T ss_dssp C-SCCEETTEECEEEECC------------
T ss_pred h-CCcEECCEEEEEEecCChhHhccccccc
Confidence 6 6777878889999888766554444443
No 93
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.2e-15 Score=121.73 Aligned_cols=75 Identities=24% Similarity=0.271 Sum_probs=67.8
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhc--CCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAV--GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~f--G~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
..++|||+|||.++|+++|+++|+.| |.|..|++. +|||||+|++.++|++|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------------------------~g~afV~f~~~~~A~~A~ 68 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------------------------RDYAFVHFSNREDAVEAM 68 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------------------------SSEEEEEESSHHHHHHHH
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------------------------CCeEEEEeCCHHHHHHHH
Confidence 46899999999999999999999999 999998872 679999999999999999
Q ss_pred HHHcCCCCCCCceEEEEcccCC
Q 015515 365 AELNDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~~~~ 386 (405)
+.|++..+.++.|+|.+...+.
T Consensus 69 ~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 69 KALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp HHHSSEEETTEEEEEECCCCCC
T ss_pred HHhCCCEeCCcEEEEEECCCCC
Confidence 9999999888888888776544
No 94
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=3.6e-15 Score=125.57 Aligned_cols=87 Identities=18% Similarity=0.189 Sum_probs=68.8
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||+++|+++|+++|++||.|..|+|+. .|||||+|++.++|++||+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~------------------------~g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR------------------------DGTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT------------------------TSEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec------------------------CCEEEEEECCHHHHHHHHHH
Confidence 457999999999999999999999999999999842 27999999999999999999
Q ss_pred HcCCCCCCCc-----eEEEEcccCCCCCCCCCCCCC
Q 015515 367 LNDEGNWRSG-----LRVRLMLRRGSKPAQVKGKKG 397 (405)
Q Consensus 367 ln~~~~~~~g-----lkV~ll~~~~~K~~~grg~~G 397 (405)
||+..+.++. |+|.....+.....+++++.+
T Consensus 71 l~g~~~~gr~~~~~~i~v~~~~~~~~~~~r~rs~~~ 106 (115)
T 3beg_B 71 LDNTKFRSHEGETAYIRVKVDGPRSPSYGRSRSRSR 106 (115)
T ss_dssp HTTCBCCCTTSCCCBCEEEECC----CCCCSCCSCC
T ss_pred hCCCEECCcEeeeEEEEeccCCCCCCCCCCCCCCCC
Confidence 9999888877 677776655554444444433
No 95
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.60 E-value=1.9e-15 Score=131.17 Aligned_cols=85 Identities=18% Similarity=0.170 Sum_probs=74.4
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++.+++ .+|||||+|++.++|++|++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~-----------------~~G~afV~F~~~~~A~~Ai~ 107 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-----------------SRGFAFVRFHDKRDAEDAMD 107 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSS-----------------CCSCCEEECSCHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999977653322 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~ 387 (405)
.|++..++++.|+|.+...+..
T Consensus 108 ~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 108 AMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp TTTTCCSSSSCCEEEECCCCCC
T ss_pred HcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999998765433
No 96
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.60 E-value=3.2e-15 Score=131.35 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=75.1
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++.++. .+|||||+|++.++|++|++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~ 130 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-----------------SRGFAFVRFHDKRDAEDAMD 130 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTT-----------------SCCEEEEEESBHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCc-----------------cceEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999987754332 28999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K 388 (405)
.|++..+.++.|+|.+...+..+
T Consensus 131 ~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 131 AMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp HSTTEESSSSEEEEEEECCSSCC
T ss_pred HhCCCEECCeEEEEEECCCCCCC
Confidence 99999998888999988755433
No 97
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.59 E-value=1.7e-15 Score=120.24 Aligned_cols=78 Identities=13% Similarity=0.193 Sum_probs=66.6
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|++.+++.+++ .+|||||+|++.++|++|++
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~ 71 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGR-----------------SRGFGFILFKDAASVEKVLD 71 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCC-----------------EEEEEEEEESSTHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCc-----------------cccEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999987754332 28999999999999999996
Q ss_pred HHcCCCCCCCceEEEE
Q 015515 366 ELNDEGNWRSGLRVRL 381 (405)
Q Consensus 366 ~ln~~~~~~~glkV~l 381 (405)
. ++..++++.|+|+.
T Consensus 72 ~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 72 Q-KEHRLDGRVIDPKK 86 (87)
T ss_dssp S-SCEEETTEEEEEEE
T ss_pred h-CCCEECCEEEEEEe
Confidence 5 66667777777765
No 98
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.7e-15 Score=121.78 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=68.0
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCC-eeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS-VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~-V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
..++|||+|||.++|+++|+++|+.||. |..+.+. .+|||||+|++.++|++|++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------------------------~~g~afV~f~~~~~A~~A~~ 62 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------------------------KSGYAFVDYPDQNWAIRAIE 62 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------------------------ETTEEEECCSCHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------------------------CCCEEEEEECCHHHHHHHHH
Confidence 4689999999999999999999999999 6666652 17899999999999999999
Q ss_pred HHcC-CCCCCCceEEEEcccCCCC
Q 015515 366 ELND-EGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 366 ~ln~-~~~~~~glkV~ll~~~~~K 388 (405)
.|++ ..++++.|+|.+...+..+
T Consensus 63 ~l~g~~~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 63 TLSGKVELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp HHTTTCEETTEECEEEECCCCCCC
T ss_pred HccCCeeECCEEEEEEEccCcccc
Confidence 9999 8888888999988765444
No 99
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.8e-15 Score=120.28 Aligned_cols=76 Identities=22% Similarity=0.270 Sum_probs=68.3
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|+.|++..+ +|||||+|++.++|++|++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----------------------~g~afV~f~~~~~A~~A~~~ 72 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----------------------DSFAYIQYESLDAAQAACAK 72 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----------------------SCCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999998521 67999999999999999999
Q ss_pred HcCCCCC--CCceEEEEcccC
Q 015515 367 LNDEGNW--RSGLRVRLMLRR 385 (405)
Q Consensus 367 ln~~~~~--~~glkV~ll~~~ 385 (405)
|++..+. ++.|+|.+...+
T Consensus 73 l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 73 MRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp HTTCBCSSSSCBCEEEECCCC
T ss_pred HCCCEeCCCCcEEEEEECCCC
Confidence 9999888 788999987644
No 100
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.59 E-value=8.4e-16 Score=122.76 Aligned_cols=81 Identities=22% Similarity=0.269 Sum_probs=69.4
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln 368 (405)
++|||+|||.++++++|+++|+.||.|..|++.+++.+++ .+|||||+|++.+ |++|++.|+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~-a~~a~~~l~ 63 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKK-----------------PKGFGFVEMQEES-VSEAIAKLD 63 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCC-----------------CCEEEEEEECTTH-HHHHHHTSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCC-----------------cceEEEEEECCHH-HHHHHHHhC
Confidence 6899999999999999999999999999999987654332 2899999999999 999999999
Q ss_pred CCCCCCCceEEEEcccCCC
Q 015515 369 DEGNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 369 ~~~~~~~glkV~ll~~~~~ 387 (405)
+..+.++.|+|.++..+..
T Consensus 64 g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 64 NTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp SSCCSSSSCSEEEC-----
T ss_pred CCEECCeEEEEEEcCCCCC
Confidence 9999999999998876543
No 101
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.8e-15 Score=122.43 Aligned_cols=82 Identities=21% Similarity=0.269 Sum_probs=68.0
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.|+ .|++++++.+++ .+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~-----------------~~g~afV~f~~~~~A~~A~~ 72 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGS-----------------SKGFGFVDFNSEEDAKAAKE 72 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCS-----------------EEEEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCC-----------------cCcEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999885 455555543221 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~ 387 (405)
.|++..+.++.|+|.+...+..
T Consensus 73 ~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 73 AMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp HHTTCEETTEECEEEECCCCCS
T ss_pred HhCCCeECCeEEEEEEecCCCC
Confidence 9999999888899998875443
No 102
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-15 Score=128.33 Aligned_cols=81 Identities=10% Similarity=0.106 Sum_probs=70.8
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCe-eEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V-~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
..++|||+|||+++|+++|+++|+.||.| ..|+|++++ +++ .+|||||+|++.++|++||+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~-----------------~~G~afV~F~~~~~a~~Al~ 75 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQ-----------------GLGQALVQFKNEDDARKSER 75 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSS-----------------CSSCEEEECSSHHHHHHHGG
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCC-----------------cceEEEEEECCHHHHHHHHH
Confidence 56899999999999999999999999999 899998765 222 38999999999999999998
Q ss_pred HHcCCCCCCCceEEEEcccCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~ 386 (405)
. ++..+.++.|+|.++..+.
T Consensus 76 ~-~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 76 L-HRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp G-CSEEETTEEEEEEEECHHH
T ss_pred h-CCCccCCeEEEEEECCHHH
Confidence 7 8888888889998876543
No 103
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.8e-15 Score=123.04 Aligned_cols=84 Identities=19% Similarity=0.173 Sum_probs=71.9
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCC-eeEEEEe-cCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS-VKTIRTC-LPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~-V~~Vri~-~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
..++|||+|||.++|+++|+++|+.||. |..|++. .++.++. .+|||||+|++.++|++|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~-----------------~~g~afV~f~~~~~A~~A~ 69 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMK-----------------NRGFAFVEYESHRAAAMAR 69 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTT-----------------TCCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCC-----------------cCcEEEEEecCHHHHHHHH
Confidence 5689999999999999999999999998 9999987 4443221 3899999999999999999
Q ss_pred HHHc--CCCCCCCceEEEEcccCCC
Q 015515 365 AELN--DEGNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 365 ~~ln--~~~~~~~glkV~ll~~~~~ 387 (405)
+.|+ +..++++.|+|.++..+..
T Consensus 70 ~~l~~g~~~~~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 70 RKLMPGRIQLWGHQIAVDWAEPEID 94 (109)
T ss_dssp TTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred HHhhCCCceecCCeEEEEEcCCCCC
Confidence 9996 4778888999999876543
No 104
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-15 Score=124.00 Aligned_cols=82 Identities=18% Similarity=0.176 Sum_probs=70.7
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++++++|+++|+.||.|..++++.++.+++ .+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~-----------------~~g~afV~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGM-----------------PTGEAMVAFESRDEATAAVID 76 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSC-----------------EEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCC-----------------eeeEEEEEECCHHHHHHHHHH
Confidence 457999999999999999999999999998877766543221 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccC
Q 015515 367 LNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~ 385 (405)
|++..++++.|+|.+...+
T Consensus 77 l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 77 LNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp TTTCEETTEECEEEESSCS
T ss_pred hCCCeeCCeEEEEEEcCCC
Confidence 9999988888999987543
No 105
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.59 E-value=5.9e-15 Score=125.12 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=73.8
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++++++|+++|+.||.|..|+|.+++ +++ .+|||||+|++.++|++|++.
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~-----------------~~g~afV~f~~~~~A~~Ai~~ 95 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGR-----------------SLGTADVHFERRADALKAMKQ 95 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSS-----------------CCSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCC-----------------EeeEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999998765 221 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~K 388 (405)
|++..+.++.|+|.++......
T Consensus 96 l~g~~~~g~~l~V~~a~~~~~~ 117 (124)
T 2kt5_A 96 YKGVPLDGRPMDIQLVASQIDL 117 (124)
T ss_dssp HTTEESSSCEEEEEEECCTTCC
T ss_pred cCCCEECCcEEEEEEeCCCCCC
Confidence 9999998889999988765433
No 106
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.59 E-value=2.2e-15 Score=116.31 Aligned_cols=74 Identities=15% Similarity=0.223 Sum_probs=65.3
Q ss_pred eEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 015515 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~ 369 (405)
+|||+|||.++|+++|+++|+.||.|..|++.+++.+++ .+|||||+|++.++|++|++ |++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~a~~-~~~ 62 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNR-----------------HRGFGFVTFESEDIVEKVCE-IHF 62 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTT-----------------SCBEEEEECSCHHHHHHHHS-SSC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCC-----------------cCcEEEEEECCHHHHHHHHH-CCC
Confidence 589999999999999999999999999999977653322 38999999999999999998 899
Q ss_pred CCCCCCceEEEE
Q 015515 370 EGNWRSGLRVRL 381 (405)
Q Consensus 370 ~~~~~~glkV~l 381 (405)
..+.++.|+|+.
T Consensus 63 ~~~~g~~l~v~~ 74 (75)
T 2mss_A 63 HEINNKMVECKK 74 (75)
T ss_dssp CCSSSCCCEEEC
T ss_pred CEECCEEEEEEe
Confidence 988888888874
No 107
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=1.8e-15 Score=119.02 Aligned_cols=73 Identities=25% Similarity=0.295 Sum_probs=63.3
Q ss_pred ceeEEeeCCCccc------cHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHH
Q 015515 288 SRIVVAENLPEDH------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (405)
Q Consensus 288 ~rtVyV~nLP~d~------t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~ 361 (405)
+++|||+|||.++ |+++|+++|++||.|..|+|.+ .++ ..+|||||+|++.++|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g-----------------~~~g~afV~f~~~~~A~ 61 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDG-----------------KTKGYIFLEYASPAHAV 61 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTT-----------------BCCCEEEEEESSHHHHH
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCC-----------------cEeEEEEEEECCHHHHH
Confidence 3799999999999 7899999999999999999852 111 13899999999999999
Q ss_pred HHHHHHcCCCCCCC-ceEE
Q 015515 362 KAIAELNDEGNWRS-GLRV 379 (405)
Q Consensus 362 kAv~~ln~~~~~~~-glkV 379 (405)
+|++.||+..++++ .|+|
T Consensus 62 ~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 62 DAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHhcCcccCCceeEEe
Confidence 99999999998887 7766
No 108
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=124.10 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=68.9
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCC-CCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQ-TSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk-~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
...++|||+|||.++++++|+++|+.|| |..|+|.+++ .+++ .+|||||+|++.++|++|+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~-----------------~~g~afV~f~~~~~a~~Ai 78 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPER-----------------LKGFGYAEFEDLDSLLSAL 78 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCC-----------------CCSCEEEEECCHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCc-----------------cCeEEEEEECCHHHHHHHH
Confidence 4578999999999999999999999999 9999997764 2221 3899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEcccC
Q 015515 365 AELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~~~ 385 (405)
.|++..+.++.|+|.+...+
T Consensus 79 -~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 79 -SLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp -HTTTCCBTTBCCCCEECCCS
T ss_pred -hcCCCEECCeEEEEEeccCC
Confidence 89999998888999887643
No 109
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.8e-15 Score=123.71 Aligned_cols=79 Identities=20% Similarity=0.167 Sum_probs=70.8
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|.+ .+|||||+|++.++|++|++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~A~~Ai~ 64 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----------------------GGITAIVEFLEPLEARKAFR 64 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----------------------SSSCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCCEEEEEeCCHHHHHHHHH
Confidence 3568999999999999999999999999999998842 17899999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~ 387 (405)
.||+..+.++.|+|.++.....
T Consensus 65 ~l~g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 65 HLAYSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp HHTTCBSSSSBCEEEEEETTTT
T ss_pred HhCCCEECCeEEEEEECCCCcc
Confidence 9999999999999998876544
No 110
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.4e-15 Score=120.67 Aligned_cols=78 Identities=26% Similarity=0.311 Sum_probs=68.6
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|. ++++..+ .+|||||+|++.++|++|++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~---------------------~~g~afV~f~~~~~a~~A~~~ 75 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQG---------------------PRRRAFLHYPDSAAAQQAVSC 75 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEET---------------------TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCC---------------------CCcEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999997 6665321 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~ 386 (405)
|++..++++.|+|.+...+.
T Consensus 76 l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 76 LQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp HTTCCSSSSCCEEEECCCCC
T ss_pred hCCCEECCcEEEEEEcCCCC
Confidence 99999999999999876543
No 111
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.58 E-value=7.3e-16 Score=135.33 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=70.5
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||+++|+++|+++|+.|| |..|+|+++++ ++ .||||||+|++.++|++||
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~-----------------srGfaFV~F~~~e~A~~Al- 103 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GR-----------------VTGEADVEFATHEEAVAAM- 103 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SC-----------------SSCCCEEECSHHHHHHHHT-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CC-----------------CceEEEEEeCCHHHHHHHH-
Confidence 3567999999999999999999999999 77999977643 21 3899999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSKPA 390 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K~~ 390 (405)
.+++..+.++.|+|.+...+....+
T Consensus 104 ~~~g~~l~gR~i~V~~a~~~~~~~~ 128 (139)
T 2hgn_A 104 SKDRANMQHRYIELFLNSTTGASNG 128 (139)
T ss_dssp TCCSCSSSSCCCCCEECCCSCC---
T ss_pred hhCCCEECCEEEEEEECCCCCCCCC
Confidence 7899888888899988876655443
No 112
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.58 E-value=2.8e-15 Score=122.23 Aligned_cols=73 Identities=21% Similarity=0.142 Sum_probs=67.7
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
+..|||+||++.+|+++|+++|++||+|.++++.. .||||||||.++++|++|++.|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----------------------~kGfaFVey~~~~eA~~Ai~~L 63 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----------------------NQGIALCKYTTREEANKAQMAL 63 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----------------------CCcEEEEEECCHHHHHHHHHHh
Confidence 56899999999999999999999999999999853 2899999999999999999999
Q ss_pred cCCCCCCCceEEEEcc
Q 015515 368 NDEGNWRSGLRVRLML 383 (405)
Q Consensus 368 n~~~~~~~glkV~ll~ 383 (405)
|+..+.++.|+|.++.
T Consensus 64 n~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 64 NNCVLANTTIFAESPS 79 (89)
T ss_dssp TTEEETTEEEEEECCC
T ss_pred cCCEECCcEEEEEECC
Confidence 9999999999998763
No 113
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.5e-15 Score=126.65 Aligned_cols=78 Identities=21% Similarity=0.204 Sum_probs=68.0
Q ss_pred cceeEEeeCCCcc-ccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 287 ~~rtVyV~nLP~d-~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
..++|||+|||++ +|+++|+++|+.||.|.+|+|.+. ||||||||++.++|++|++
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-----------------------KSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-----------------------TTEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 4689999999998 999999999999999999999531 7899999999999999999
Q ss_pred HHcCC--CCCCCceEEEEcccCCC
Q 015515 366 ELNDE--GNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 366 ~ln~~--~~~~~glkV~ll~~~~~ 387 (405)
.|++. .+.++.|+|.+...+..
T Consensus 81 ~l~~~~~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 81 HCLKKALWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp HHHHSCCCSSSSCCEEEEECSCSS
T ss_pred HhccCCceECCEEEEEEECccccc
Confidence 98753 46778899999865443
No 114
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.4e-15 Score=125.38 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=71.9
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|++||.|..|++.+++. ..+|||||+|++.++|++|++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-------------------~~kg~afV~f~~~~~A~~Ai~ 87 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-------------------GSKGFGFVTFENSADADRARE 87 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-------------------BCTTEEEEECCCSHHHHHHHH
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-------------------CCceEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999976531 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccC
Q 015515 366 ELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~ 385 (405)
.|++..++++.|+|.+...+
T Consensus 88 ~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 88 KLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp HHTTCEETTEECEEEECCCS
T ss_pred HcCCCEECCEEEEEEECCCC
Confidence 99999998888999987644
No 115
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.4e-15 Score=120.14 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=65.0
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++++++|+++|+.||.|..|+|.+++.++. .+|||||+|++.++|++|++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNK-----------------CKGYGFVDFDSPSAAQKAVTA 66 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCS-----------------CCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC-----------------cCcEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987754332 389999999999999999999
Q ss_pred HcCCCCCCCceEE
Q 015515 367 LNDEGNWRSGLRV 379 (405)
Q Consensus 367 ln~~~~~~~glkV 379 (405)
|++..+.++-|+|
T Consensus 67 l~g~~~~g~~~~~ 79 (85)
T 1x4e_A 67 LKASGVQAQMAKQ 79 (85)
T ss_dssp HHHHTCCEESCCS
T ss_pred hcCCeEeeEEEee
Confidence 9988765544433
No 116
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.58 E-value=3.6e-15 Score=123.89 Aligned_cols=73 Identities=23% Similarity=0.174 Sum_probs=67.2
Q ss_pred cceeEEeeCCCcc-ccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 287 ~~rtVyV~nLP~d-~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
..++|||+|||.+ +|+++|+++|++||.|..|+|. +|||||+|++.++|++|++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-------------------------KGYAFVQYSNERHARAAVL 80 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-------------------------TTEEEEECSSSHHHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-------------------------CCEEEEEECCHHHHHHHHH
Confidence 4579999999999 9999999999999999999881 7899999999999999999
Q ss_pred HHcCCCCCCCceEEEEccc
Q 015515 366 ELNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~ 384 (405)
.|++..+.++.|+|.+...
T Consensus 81 ~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 81 GENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp HHTTCEETTEECCEEESCC
T ss_pred HcCCCEECCeEEEEEECCC
Confidence 9999998888899988763
No 117
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3.2e-15 Score=121.99 Aligned_cols=81 Identities=27% Similarity=0.330 Sum_probs=67.3
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|++||.| +++++. ++ ..+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~-~g-----------------~~~g~afV~f~~~~~A~~A~~ 71 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQ-NG-----------------KSKGYAFIEFASFEDAKEALN 71 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCS-SS-----------------CBCSEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECC-CC-----------------CEeeEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999987 443331 11 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~ 387 (405)
.|++..+.++.|+|.+...+..
T Consensus 72 ~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 72 SCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp HTSSEEETTEEEEEEECSSCCC
T ss_pred HhCCCEeCCeEEEEEEcCCCCC
Confidence 9999988888899998876533
No 118
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.7e-15 Score=123.09 Aligned_cols=80 Identities=23% Similarity=0.202 Sum_probs=70.1
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++ ++. .+|||||+|++.++|++|++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~-----------------~~g~afV~f~~~~~a~~A~~ 84 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGT-----------------SRGVGFARMESTEKCEAVIG 84 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSC-----------------EEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCC-----------------cceEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999998764 221 38999999999999999999
Q ss_pred HHcCCCC--------CCCceEEEEcc
Q 015515 366 ELNDEGN--------WRSGLRVRLML 383 (405)
Q Consensus 366 ~ln~~~~--------~~~glkV~ll~ 383 (405)
.||+..+ +++.|+|+++.
T Consensus 85 ~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 85 HFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp HHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred HhCCCEEcCCccccCCCCceeEEccC
Confidence 9999887 56678888876
No 119
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.58 E-value=9.1e-15 Score=126.89 Aligned_cols=116 Identities=13% Similarity=0.093 Sum_probs=84.7
Q ss_pred CHHHHHHHhhccccceeeccccccccCCCCcchhhhhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCC
Q 015515 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (405)
Q Consensus 249 d~~~I~eAL~~S~~LeVsedg~kVRR~~Pl~e~~~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~ 328 (405)
+.+.+..|++..+...+......|....+... ......++|||+|||.++|+++|+++|+.||.|..|++.++..++.
T Consensus 50 ~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~ 127 (166)
T 3md3_A 50 QSHDANIALQTLNGKQIENNIVKINWAFQSQQ--SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGS 127 (166)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCCCC--CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCC
T ss_pred CHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC--CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCC
Confidence 34445555544443444333333333222111 1223568999999999999999999999999999999987654322
Q ss_pred CCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEcc
Q 015515 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLML 383 (405)
Q Consensus 329 ~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~glkV~ll~ 383 (405)
.+|||||+|++.++|++|++.|++..++++.|+|.++.
T Consensus 128 -----------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 128 -----------------SRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp -----------------EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred -----------------cceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 38999999999999999999999999988889998764
No 120
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=1.3e-15 Score=122.65 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=69.2
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..++++.++.+++ .+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~-----------------~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGM-----------------PTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCC-----------------EeeEEEEEECCHHHHHHHHHH
Confidence 458999999999999999999999999999888876543221 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEcc
Q 015515 367 LNDEGNWRSGLRVRLML 383 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~ 383 (405)
|++..+.++.|+|.+..
T Consensus 77 l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 77 LNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp HTTCEETTEECEEECCC
T ss_pred hCCCeECCcEEEEEecc
Confidence 99999888888888653
No 121
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.6e-15 Score=121.53 Aligned_cols=80 Identities=23% Similarity=0.284 Sum_probs=68.9
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeE-EEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~-Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
..++|||+|||+++|+++|+++|+.||.|.. |+|+++. +++ .+|||||+|++.++|++|++
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~-~g~-----------------~~G~afV~F~~~~~a~~A~~ 75 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDF-QGR-----------------STGEAFVQFASQEIAEKALK 75 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCS-SSC-----------------BCSEEEEEESSHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECC-CCC-----------------cceEEEEEECCHHHHHHHHH
Confidence 4679999999999999999999999999987 8886652 221 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccC
Q 015515 366 ELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~ 385 (405)
. ++..++++.|+|.....+
T Consensus 76 ~-~~~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 76 K-HKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp T-TTCCSSSSCCEEEEECTT
T ss_pred h-CcchhCCcEEEEEECCHH
Confidence 8 888888888999877644
No 122
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.57 E-value=2.3e-14 Score=130.29 Aligned_cols=86 Identities=20% Similarity=0.248 Sum_probs=75.6
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|++.+++.+++ .+|||||+|++.++|.+|++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~-----------------~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGK-----------------HKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCC-----------------cCceEEEEecCHHHHHHHHH
Confidence 4568999999999999999999999999999999987754322 28999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~K 388 (405)
.|++..+.++.|+|.+...+...
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCSST
T ss_pred HccCCEeCCcEEEEEEecCCCCC
Confidence 99999999999999988766443
No 123
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.5e-15 Score=122.76 Aligned_cols=82 Identities=16% Similarity=0.268 Sum_probs=70.1
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCe----eEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSV----KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V----~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (405)
..++|||+|||.++|+++|+++|+.||.| ..+++. ++ ..+|||||+|++.++|++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g-----------------~~~g~afV~f~~~~~a~~ 82 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TG-----------------RMRGQAFITFPNKEIAWQ 82 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CS-----------------SSCSEEEEECSSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CC-----------------ccceEEEEEECCHHHHHH
Confidence 56899999999999999999999999999 455553 11 138999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEcccCCCCC
Q 015515 363 AIAELNDEGNWRSGLRVRLMLRRGSKP 389 (405)
Q Consensus 363 Av~~ln~~~~~~~glkV~ll~~~~~K~ 389 (405)
|++.|++..+.++.|+|.+...+..+.
T Consensus 83 Ai~~l~g~~~~g~~l~v~~a~~~~~~~ 109 (115)
T 2cpx_A 83 ALHLVNGYKLYGKILVIEFGKNKKQRS 109 (115)
T ss_dssp HHHHSTTCBCSSCBCEEEECCCCSCCC
T ss_pred HHHHhCCCEeCCcEEEEEEccCCCCCC
Confidence 999999999989999999987665553
No 124
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.57 E-value=6.9e-15 Score=120.23 Aligned_cols=74 Identities=20% Similarity=0.337 Sum_probs=67.8
Q ss_pred hcceeEEeeCCCc-cccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 286 LQSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 286 ~~~rtVyV~nLP~-d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
...++|||+|||. ++++++|+++|+.||.|..|++. +|||||+|++.++|++|+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~Ai 74 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------------------NAFGFIQFDNPQSVRDAI 74 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------------------------SSEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------CCEEEEEECCHHHHHHHH
Confidence 3578999999998 99999999999999999999982 789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEccc
Q 015515 365 AELNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~~ 384 (405)
+.|++..+.++.|+|.+...
T Consensus 75 ~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 75 EXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp HHHTTSEETTEECEEEECCC
T ss_pred HHcCCCEECCEEEEEEecCC
Confidence 99999988888899988754
No 125
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.57 E-value=2.7e-15 Score=141.53 Aligned_cols=80 Identities=16% Similarity=0.099 Sum_probs=71.7
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcC--CeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG--~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
..++|||+||++++|+++|+++|+.|| .|+.|+|++++.+++ .||||||+|++.++|++||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~-----------------skGfaFV~f~~~~~a~~Ai 129 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ-----------------SKGFALVGVGSEASSKKLM 129 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCC-----------------EEEEEEEEESCTTHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCc-----------------cceEEEEEECCHHHHHHHH
Confidence 467999999999999999999999999 999999998865443 2899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEcc
Q 015515 365 AELNDEGNWRSGLRVRLML 383 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~ 383 (405)
+.||+..+.++.|+|.++.
T Consensus 130 ~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 130 DLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp TTSTTSCBTTBCCEEEECC
T ss_pred HHcCCCeECCEEeEEEECC
Confidence 9999999999999999864
No 126
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.57 E-value=3.9e-15 Score=127.67 Aligned_cols=79 Identities=27% Similarity=0.363 Sum_probs=70.0
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++.+++ .+|||||+|++.++|++|++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~ 123 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEK-----------------HRGFAFVEFELAEDAAAAID 123 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCC-----------------CCSEEEEEESCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCC-----------------cCcEEEEEECCHHHHHHHHH
Confidence 3578999999999999999999999999999999987654322 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEE
Q 015515 366 ELNDEGNWRSGLRVRL 381 (405)
Q Consensus 366 ~ln~~~~~~~glkV~l 381 (405)
.|++..+.++.|+|++
T Consensus 124 ~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 124 NMNESELFGRTIRVNL 139 (140)
T ss_dssp HSTEEEETTEEEEEEC
T ss_pred HhCCCEECCEEEEEEe
Confidence 9999888888888875
No 127
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.57 E-value=4.1e-15 Score=124.13 Aligned_cols=78 Identities=28% Similarity=0.351 Sum_probs=69.7
Q ss_pred hhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
+...++|||+|||.++|+++|+++|+.||.|+.|++. +|||||+|++.++|++|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------------------------kg~afV~f~~~~~A~~Ai 82 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------------------------NGFAFVEFEEAESAAKAI 82 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------------------------TTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHH
Confidence 4567899999999999999999999999999999984 679999999999999999
Q ss_pred HHHcCCCCCCCceEEEEcccCCC
Q 015515 365 AELNDEGNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~~~~~ 387 (405)
+.|++..+.++.|+|.+...+..
T Consensus 83 ~~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 83 EEVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp HHHTTCEETTEECEEESCSCCC-
T ss_pred HHcCCCEECCeEEEEEEecCCCC
Confidence 99999998888888887765443
No 128
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.56 E-value=7.3e-15 Score=128.51 Aligned_cols=77 Identities=23% Similarity=0.242 Sum_probs=70.2
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|++.++ .+|||||+|++.++|++|++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~~ 128 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----------------------PPGFAFVEFEDPRDAADAVR 128 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----------------------SCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----------------------CCcEEEEEECCHHHHHHHHH
Confidence 45689999999999999999999999999999999643 17899999999999999999
Q ss_pred HHcCCCCCCCceEEEEccc
Q 015515 366 ELNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~ 384 (405)
.|++..++++.|+|.+...
T Consensus 129 ~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 129 ELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp HHSSSCSSSSCCEEEECCC
T ss_pred HcCCCEECCeEEEEEEcCC
Confidence 9999999999999998754
No 129
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.7e-15 Score=116.95 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=66.3
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|++||.|..|++.++ ||||||+|++.++|++|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----------------------kg~afV~f~~~~~A~~a~~ 66 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----------------------QQCAFIQFATRQAAEVAAE 66 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----------------------GTEEEEEESSHHHHHHHHH
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999999999999632 7899999999999999999
Q ss_pred HH-cCCCCCCCceEEEEc
Q 015515 366 EL-NDEGNWRSGLRVRLM 382 (405)
Q Consensus 366 ~l-n~~~~~~~glkV~ll 382 (405)
.| ++..++++.|+|.++
T Consensus 67 ~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 67 KSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp TTTTTCEETTEECCEEEC
T ss_pred HhcCCeeECCCEEEEEec
Confidence 99 888887877888764
No 130
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=1.6e-15 Score=123.77 Aligned_cols=83 Identities=18% Similarity=0.214 Sum_probs=68.8
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|.. ++++++.++ ..+|||||+|++.++|++|++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~ 76 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTG-----------------TNRKFGYVDFESAEDLEKALE 76 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEE-----------------TTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCC-----------------CcCcEEEEEECCHHHHHHHHh
Confidence 35789999999999999999999999999877 444332211 138999999999999999998
Q ss_pred HHcCCCCCCCceEEEEcccCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~ 387 (405)
|++..+.++.|+|.+...+..
T Consensus 77 -l~g~~~~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 77 -LTGLKVFGNEIKLEKPKGRDG 97 (101)
T ss_dssp -GGGCCBTTBCCEEECCSCCCC
T ss_pred -cCCcEECCcEEEEEEcCCCCC
Confidence 999999888999998765433
No 131
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.56 E-value=1.2e-14 Score=121.37 Aligned_cols=79 Identities=24% Similarity=0.282 Sum_probs=71.0
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|++.+++. .+|||||+|++.++|++|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~--------------------~~g~afV~f~~~~~A~~A~~~ 66 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE--------------------TRGTAYVVYEDIFDAKNAVDH 66 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT--------------------TTTCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC--------------------CCcEEEEEECCHHHHHHHHHH
Confidence 467999999999999999999999999999999975421 278999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccC
Q 015515 367 LNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~ 385 (405)
|++..+.++.|+|.+...+
T Consensus 67 l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 67 LSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp HTTCBSSSCBCEEEECCHH
T ss_pred cCCCEECCeEEEEEEecCC
Confidence 9999999999999987643
No 132
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.56 E-value=1.8e-14 Score=148.09 Aligned_cols=83 Identities=19% Similarity=0.212 Sum_probs=74.1
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+||+.++|+++|+++|++||.|+.|.|+.++.++. .+|||||+|++.++|++||..
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGK-----------------PRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCC-----------------ccceEEEeeccHHHHHHHHHH
Confidence 457999999999999999999999999999999987754332 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~ 386 (405)
||+..+++..|+|.++..+.
T Consensus 164 lng~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 164 ADGKKIDGRRVLVDVERGRT 183 (437)
T ss_pred cCCCEECCEEEEEEEeCCCC
Confidence 99999998899999987653
No 133
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=4e-15 Score=121.42 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=66.2
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|++.+ .+|||||+|++.++|++|++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----------------------~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----------------------EKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 357999999999999999999999999999999952 278999999999999999999
Q ss_pred HcCCCCCCCceEEEEcc
Q 015515 367 LNDEGNWRSGLRVRLML 383 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~ 383 (405)
|++..+.++.|+|.+..
T Consensus 83 l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 83 LANFPFQGRNLRTGWGK 99 (101)
T ss_dssp HTTCEETTEECCCCBCC
T ss_pred hCCCeECCeEEEEEecc
Confidence 99998887777777654
No 134
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.56 E-value=4.2e-15 Score=125.63 Aligned_cols=78 Identities=18% Similarity=0.109 Sum_probs=68.3
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcC-CeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG-~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
..++|||+|||+++|+++|+++|+.|| .|..|++...+ .+|||||+|++.++|++|++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~---------------------~rGfaFV~F~~~e~A~~Ai~ 85 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD---------------------FDGTGALEFPSEEILVEALE 85 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS---------------------SSCCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC---------------------CCCEEEEEECCHHHHHHHHH
Confidence 457999999999999999999999999 99999884211 28999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccC
Q 015515 366 ELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~ 385 (405)
.||+..+.++.|+|.+....
T Consensus 86 ~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 86 RLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp HTTTEEETTEEEEEEESCC-
T ss_pred HcCCCEECCeEEEEEECCCC
Confidence 99999998888999887543
No 135
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.55 E-value=3.1e-14 Score=124.23 Aligned_cols=112 Identities=24% Similarity=0.278 Sum_probs=82.1
Q ss_pred HHHHHHHhhccccceeeccccccccCCCCcchhhhhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCC
Q 015515 250 HSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGG 329 (405)
Q Consensus 250 ~~~I~eAL~~S~~LeVsedg~kVRR~~Pl~e~~~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~ 329 (405)
.+.+..|++..+...+......|....+-. .....++|||+|||.++++++|+++|+.||.|..|++.+++.++.
T Consensus 55 ~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~- 129 (168)
T 1b7f_A 55 EMDSQRAIKVLNGITVRNKRLKVSYARPGG----ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGR- 129 (168)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECCCCS----STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCC-
T ss_pred HHHHHHHHHhcCCCEeCCcEEEEEecCCCc----ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCC-
Confidence 445555555434344433333333333221 124568999999999999999999999999999999987653322
Q ss_pred CCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCC--CceEEEEc
Q 015515 330 ASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWR--SGLRVRLM 382 (405)
Q Consensus 330 ~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~--~glkV~ll 382 (405)
.+|||||+|++.++|.+|++.|++..+.+ +.|+|.++
T Consensus 130 ----------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 130 ----------------PRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp ----------------EEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred ----------------cceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 28999999999999999999999998866 67888763
No 136
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.55 E-value=1.6e-14 Score=126.74 Aligned_cols=112 Identities=19% Similarity=0.240 Sum_probs=84.7
Q ss_pred CHHHHHHHhhccccceeeccccccccCCCCcchhhhhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCC
Q 015515 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (405)
Q Consensus 249 d~~~I~eAL~~S~~LeVsedg~kVRR~~Pl~e~~~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~ 328 (405)
+.+.+..|+ ..+...+.....+|++..... .....++|||+|||.++|+++|+++|+.||.|..|++.+++.++.
T Consensus 60 ~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~----~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~ 134 (172)
T 2g4b_A 60 SVDETTQAM-AFDGIIFQGQSLKIRRPHDYQ----PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 134 (172)
T ss_dssp SHHHHHHHG-GGTTCEETTEECEEECCSSCC----CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCS
T ss_pred CHHHHHHHH-HhCCcEecCceeeecCCcccC----CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCC
Confidence 445566666 444445543333444433221 112468999999999999999999999999999999987653322
Q ss_pred CCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEc
Q 015515 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (405)
Q Consensus 329 ~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~glkV~ll 382 (405)
.+|||||+|++.++|++|++.|++..++++.|+|.++
T Consensus 135 -----------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 135 -----------------SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp -----------------EEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred -----------------cceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 3899999999999999999999999998888998875
No 137
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.55 E-value=4.2e-14 Score=122.81 Aligned_cols=112 Identities=19% Similarity=0.296 Sum_probs=81.8
Q ss_pred CHHHHHHHhhccccceeeccccccccCCCCcchhhhhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCC
Q 015515 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (405)
Q Consensus 249 d~~~I~eAL~~S~~LeVsedg~kVRR~~Pl~e~~~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~ 328 (405)
+.+.+..|++..+...+......|....+-. .....++|||+|||.++++++|+++|+.||.|..|++.++..++.
T Consensus 53 ~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~ 128 (167)
T 1fxl_A 53 DPKDAEKAINTLNGLRLQTKTIKVSYARPSS----ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGV 128 (167)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCCC----GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC
T ss_pred CHHHHHHHHHHcCCCccCCceEEEEecCCCc----ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCC
Confidence 3455555665433344443333343333222 224568999999999999999999999999999999987653322
Q ss_pred CCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCc--eEEEE
Q 015515 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSG--LRVRL 381 (405)
Q Consensus 329 ~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~g--lkV~l 381 (405)
.+|||||+|++.++|.+|++.|++..+.++. |+|.+
T Consensus 129 -----------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 129 -----------------SRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp -----------------EEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred -----------------ccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 2899999999999999999999999887765 66654
No 138
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=3.8e-15 Score=114.81 Aligned_cols=74 Identities=14% Similarity=0.251 Sum_probs=64.4
Q ss_pred eEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 015515 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~ 369 (405)
+|||+|||.++|+++|+++|+.||.|..|++.+++.+++ .+|||||+|++.++|++|++. ++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~a~~Ai~~-~~ 62 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNK-----------------RRGFCFITFKEEEPVKKIMEK-KY 62 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSS-----------------SCCCEEEECSSSHHHHHHHTT-SS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC-----------------cCCEEEEEECCHHHHHHHHHh-CC
Confidence 699999999999999999999999999999976653322 389999999999999999995 77
Q ss_pred CCCCCCceEEEE
Q 015515 370 EGNWRSGLRVRL 381 (405)
Q Consensus 370 ~~~~~~glkV~l 381 (405)
..+.++.|+|++
T Consensus 63 ~~~~g~~l~v~~ 74 (75)
T 1iqt_A 63 HNVGLSKCEIKV 74 (75)
T ss_dssp CCBTTBCCCEEE
T ss_pred CeECCEEEEEEE
Confidence 778788888875
No 139
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.55 E-value=6.7e-15 Score=121.69 Aligned_cols=78 Identities=24% Similarity=0.287 Sum_probs=68.2
Q ss_pred cceeEEeeCCCccc------cHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHH
Q 015515 287 QSRIVVAENLPEDH------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (405)
Q Consensus 287 ~~rtVyV~nLP~d~------t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A 360 (405)
..++|||+|||.++ |+++|+++|++||.|..|+|.+ .++ ..+|||||+|++.++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g-----------------~~~G~afV~f~~~~~A 74 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDG-----------------KTKGYIFLEYASPAHA 74 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTT-----------------BSCCEEEEEECSSSHH
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCC-----------------CeeeEEEEEECCHHHH
Confidence 46799999999999 8899999999999999999852 211 1389999999999999
Q ss_pred HHHHHHHcCCCCCCC-ceEEEEcc
Q 015515 361 EKAIAELNDEGNWRS-GLRVRLML 383 (405)
Q Consensus 361 ~kAv~~ln~~~~~~~-glkV~ll~ 383 (405)
++|++.||+..++++ .|+|.++.
T Consensus 75 ~~Ai~~l~g~~~~g~~~l~V~~a~ 98 (105)
T 2nlw_A 75 VDAVKNADGYKLDKQHTFRVNLFT 98 (105)
T ss_dssp HHHHHHCSSEECSTTCEEEEECSC
T ss_pred HHHHHHhCCcccCCCceEEEEEcc
Confidence 999999999999888 89998775
No 140
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.55 E-value=1.2e-14 Score=134.16 Aligned_cols=116 Identities=21% Similarity=0.225 Sum_probs=85.1
Q ss_pred CHHHHHHHhhccccceeeccccccccCCCCcchhhhhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCC
Q 015515 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (405)
Q Consensus 249 d~~~I~eAL~~S~~LeVsedg~kVRR~~Pl~e~~~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~ 328 (405)
+.+.+..||+..+...+. +..++...............++|||+||+.++|+++|+++|+.||.|+.|+|.+++.
T Consensus 66 ~~~~A~~Ai~~~~~~~~~--g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~--- 140 (213)
T 4f02_A 66 QPADAERALDTMNFDVIK--GKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--- 140 (213)
T ss_dssp SHHHHHHHHHHHTTCEET--TEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT---
T ss_pred CHHHHHHHHHHhhhhhcC--CcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC---
Confidence 344555566544433332 333332222222222334567999999999999999999999999999999986531
Q ss_pred CCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEcccC
Q 015515 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 329 ~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~glkV~ll~~~ 385 (405)
..||||||+|++.++|++|++.||+..+.++.|+|.++..+
T Consensus 141 ----------------~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 141 ----------------GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp ----------------EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ----------------CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 12899999999999999999999999999999999987654
No 141
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.54 E-value=2.7e-14 Score=125.22 Aligned_cols=79 Identities=18% Similarity=0.327 Sum_probs=68.6
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|++.++.+ + ..+|||||+|++.++|++|++
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g-----------------~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-G-----------------LSRGCAFVTFTTRAMAQTAIK 154 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-C-----------------CEEEEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999986632 1 138999999999999999999
Q ss_pred HHcCCCCCC---CceEEEEc
Q 015515 366 ELNDEGNWR---SGLRVRLM 382 (405)
Q Consensus 366 ~ln~~~~~~---~glkV~ll 382 (405)
.|++..+++ +.|+|.++
T Consensus 155 ~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 155 AMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHTTSCCCTTCSSCCEEEEC
T ss_pred HhcCCcccCCCCCCeEEEec
Confidence 999987664 67888875
No 142
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=9.1e-15 Score=126.32 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=69.1
Q ss_pred cceeEEeeCCCccccHHHHH----HHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~----~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (405)
..++|||+||++++++++|+ ++|++||.|..|++.+. + ..||||||+|++.++|++
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~---~-----------------~~rG~aFV~F~~~~~A~~ 87 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS---D-----------------DNSGKAYIVFATQESAQA 87 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC---C-----------------SSCCCEEEEESSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC---C-----------------CcCCEEEEEECCHHHHHH
Confidence 36799999999999998866 79999999999988431 1 128999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEcccCC
Q 015515 363 AIAELNDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 363 Av~~ln~~~~~~~glkV~ll~~~~ 386 (405)
|++.||+..+.++.|+|.++..+.
T Consensus 88 Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 88 FVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp HHHHSTTCCCTTSCCEEEECCCCC
T ss_pred HHHHHCCCEeCCCEEEEEEccCcc
Confidence 999999999999999999887554
No 143
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=116.59 Aligned_cols=80 Identities=18% Similarity=0.154 Sum_probs=70.0
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.| .|..|+|+++ .+++ .+|||||+|++.++|++|++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~-----------------~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGN-----------------KTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSC-----------------EEEEEEEECSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCC-----------------CceEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999 9999999876 2221 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccC
Q 015515 366 ELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~ 385 (405)
|++..++++.|+|.+...+
T Consensus 69 -~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 69 -CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp -SCSEEETTEEEEEEEESSC
T ss_pred -hCCceeCCcEEEEEECCcC
Confidence 9999998888999887654
No 144
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=4.5e-15 Score=125.66 Aligned_cols=79 Identities=20% Similarity=0.181 Sum_probs=69.8
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCC---eeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~---V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (405)
..++|||+|||+++|+++|+++|+.||. |..|+|++++. ++ .+|||||+|++.++|++|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~-----------------~~G~afV~F~~~~~a~~A 77 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GR-----------------QSGEAFVELESEDDVKLA 77 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SC-----------------EEEEEEEEBSSHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CC-----------------CCeEEEEEECCHHHHHHH
Confidence 5689999999999999999999999999 89999987653 21 389999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEccc
Q 015515 364 IAELNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 364 v~~ln~~~~~~~glkV~ll~~ 384 (405)
++ |++..+.++.|+|.+...
T Consensus 78 l~-~~g~~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 78 LK-KDRESMGHRYIEVFKSHR 97 (118)
T ss_dssp GG-GTTEEETTEEEEEEEECH
T ss_pred Hh-cCCCeECCeEEEEEECCH
Confidence 99 999888888889987654
No 145
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=5.3e-15 Score=124.50 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=68.0
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||+++|+++|+++|+.| .|..|+|++++. ++ .+|||||+|++.++|++|+ .
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~-----------------~~G~afV~F~~~~~a~~Al-~ 74 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GR-----------------NNGNGLVKFLSPQDTFEAL-K 74 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CC-----------------CCSEEEEECSSHHHHHHHH-H
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CC-----------------CCeEEEEEECCHHHHHHHH-h
Confidence 35799999999999999999999999 899999987643 22 2899999999999999999 6
Q ss_pred HcCCCCCCCceEEEEcccC
Q 015515 367 LNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~ 385 (405)
|++..++++.|+|.....+
T Consensus 75 ~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 75 RNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp TTTEEETTEEEEEEECCHH
T ss_pred cCCCeECCeEEEEEECCcc
Confidence 8998888888888776543
No 146
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.8e-14 Score=116.39 Aligned_cols=80 Identities=21% Similarity=0.247 Sum_probs=66.7
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..| + .++.+ .+ ||||+|++.++|++|++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~-~~~~~-------------------g~-~afV~f~~~~~a~~ai~- 63 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-V-MDKDK-------------------GV-FAIVEMGDVGAREAVLS- 63 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-E-ECSSS-------------------CC-EEEEEESSHHHHHHHHT-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-E-EcCCC-------------------Cc-EEEEEECCHHHHHHHHh-
Confidence 45799999999999999999999999999988 3 23210 13 99999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCCCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGSKP 389 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~K~ 389 (405)
|++..++++.|+|.....+..+.
T Consensus 64 l~g~~~~g~~l~V~~a~~~~~~~ 86 (94)
T 2e5g_A 64 QSQHSLGGHRLRVRPREQKEFQS 86 (94)
T ss_dssp CSCCEETTEECCCBCSCCSCCCC
T ss_pred cCCeEECCEEEEEEECCcCCCCC
Confidence 99999888888888766555443
No 147
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.6e-14 Score=115.23 Aligned_cols=77 Identities=25% Similarity=0.268 Sum_probs=67.3
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|| ++|+++|+++|+.||.|..|+|.+ .+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----------------------PRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 4679999996 899999999999999999999831 278999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccCCCC
Q 015515 367 LNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~~~K 388 (405)
|++..+.++.|+|.+...+..+
T Consensus 69 l~g~~~~g~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 69 LNGTQVESVQLKVNIARKQPML 90 (97)
T ss_dssp TTTEEETTEEEEEECCSSCCCC
T ss_pred hCCCeECCeEEEEEECCCCCCC
Confidence 9999888888888887655443
No 148
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.6e-14 Score=113.91 Aligned_cols=78 Identities=19% Similarity=0.176 Sum_probs=69.0
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEE-EecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIR-TCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vr-i~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
..++|||+|||.++|+++|+++|+.||.|..|+ +.+++. .|.|||+|++.++|++|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---------------------~~~afV~f~~~~~a~~Ai~ 72 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---------------------TAVVNVTYSSKDQARQALD 72 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---------------------SEEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---------------------CCEEEEEECCHHHHHHHHH
Confidence 467999999999999999999999999999995 654431 3449999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccC
Q 015515 366 ELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~ 385 (405)
.|++..+.++.|+|.++..+
T Consensus 73 ~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 73 KLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHTTCBCSSCBCEEEECCCC
T ss_pred HhCCCEECCcEEEEEEcCcc
Confidence 99999999999999988765
No 149
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.52 E-value=7.9e-15 Score=128.20 Aligned_cols=79 Identities=18% Similarity=0.147 Sum_probs=70.1
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCC---eeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~---V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (405)
..++|||+|||+++|+++|+++|+.||. |..|+|++++. ++ .+|||||+|++.++|++|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~-----------------srG~aFV~F~~~e~a~~A 104 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GR-----------------QSGEAFVELGSEDDVKMA 104 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SC-----------------EEEEEEEECSSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CC-----------------CCeEEEEEECCHHHHHHH
Confidence 4679999999999999999999999999 89999987753 22 389999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEccc
Q 015515 364 IAELNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 364 v~~ln~~~~~~~glkV~ll~~ 384 (405)
++ |++..+.++.|+|.....
T Consensus 105 l~-~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 105 LK-KDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp HT-TTEEESSSSEEEEEECCH
T ss_pred Hh-cCCCEECCEEEEEEECCh
Confidence 99 999999888899987653
No 150
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=8.8e-15 Score=118.13 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=67.0
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..+ . .. + ..+|||||+|++.++|++|++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~-~~---~-----------------~~~g~afV~f~~~~~a~~A~~ 71 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-S-QD---G-----------------KSKGIAYIEFKSEADAEKNLE 71 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-E-ET---T-----------------EEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-C-CC---C-----------------CcceEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999998777 1 11 0 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~ 386 (405)
.|++..+.++.|+|.+...+.
T Consensus 72 ~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 72 EKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp HTTEEEETTEEEEEEECSSSC
T ss_pred HhCCCEECCeEEEEEEcCCCC
Confidence 999998888888888876443
No 151
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.52 E-value=7.1e-15 Score=121.96 Aligned_cols=79 Identities=19% Similarity=0.177 Sum_probs=69.6
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCC---eeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~---V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (405)
..++|||+|||+++|+++|+++|+.||. |..|+|++++. ++ .+|||||+|++.++|++|
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~-----------------~~G~afV~F~~~~~a~~A 71 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GK-----------------RRGDALIEMESEQDVQKA 71 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-ST-----------------TCSEEEEEBSSHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CC-----------------EeeEEEEEECCHHHHHHH
Confidence 5679999999999999999999999998 89999977643 21 389999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEccc
Q 015515 364 IAELNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 364 v~~ln~~~~~~~glkV~ll~~ 384 (405)
++ |++..++++.|+|.....
T Consensus 72 l~-~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 72 LE-KHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp HT-TTTCCSSSSCCCCEECCH
T ss_pred HH-hCcceeCCeEEEEEECCH
Confidence 99 999888888899987664
No 152
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.52 E-value=2.9e-14 Score=124.56 Aligned_cols=82 Identities=13% Similarity=0.195 Sum_probs=71.8
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|++.+++.++. .+|||||+|++.++|++|++
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQ-----------------SRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSST-----------------TSEEEEEEESSHHHHHHHHH
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCc-----------------cceEEEEEECCHHHHHHHHh
Confidence 4568999999999999999999999999999999987654332 38999999999999999998
Q ss_pred HHcCCCCCCCceEEEEcccC
Q 015515 366 ELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~ 385 (405)
+++..++++.|+|.++..|
T Consensus 148 -~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 148 -NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp -CSEECSSSSCEEEEECCCC
T ss_pred -CCCEEeCCeEEEEeecCCC
Confidence 8888888899999987654
No 153
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.51 E-value=3.2e-14 Score=131.23 Aligned_cols=80 Identities=20% Similarity=0.225 Sum_probs=70.7
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..+||||+|||.++|+++|+++|++||.|++|+|++++.+++ .+|||||+|++.++|++|++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-----------------~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRR-----------------SLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCC-----------------ccccccceeCCHHHHHHHHHH
Confidence 457999999999999999999999999999999998765432 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEcc
Q 015515 367 LNDEGNWRSGLRVRLML 383 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~ 383 (405)
|++..+.++.|+|....
T Consensus 77 ~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 77 MNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp HTTCEETTEECEEEECC
T ss_pred hhhhhcCCccccccccc
Confidence 99988888778887654
No 154
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.5e-15 Score=125.60 Aligned_cols=80 Identities=14% Similarity=0.132 Sum_probs=68.1
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||+++|+++|+++|+.||.|..+.++.++.+++ .+|||||+|++.++|++||+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~-----------------~~G~afV~F~~~~~a~~Al~- 85 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGK-----------------ATGEGFVEFRNEADYKAALC- 85 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSS-----------------EEEEEEEEBSSSHHHHHHHT-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCC-----------------CCeEEEEEECCHHHHHHHHH-
Confidence 468999999999999999999999999998754444432221 38999999999999999999
Q ss_pred HcCCCCCCCceEEEEccc
Q 015515 367 LNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~ 384 (405)
|++..+.++.|+|..+..
T Consensus 86 ~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 86 RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp SCSBCSTTSCBEEEEECH
T ss_pred hCCCeECCcEEEEEECCH
Confidence 999999999999998764
No 155
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.50 E-value=2.9e-14 Score=135.82 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=67.5
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|+.|++..++ +|||||+|++.++|++|++.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----------------------~g~afV~f~~~~~A~~A~~~ 263 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----------------------HDIAFVEFDNEVQAGAARDA 263 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----------------------CcEEEEEeCCHHHHHHHHHH
Confidence 45789999999999999999999999999999996331 58999999999999999999
Q ss_pred HcCCCCC-CCceEEEEcc
Q 015515 367 LNDEGNW-RSGLRVRLML 383 (405)
Q Consensus 367 ln~~~~~-~~glkV~ll~ 383 (405)
|++..++ ++.|+|.+..
T Consensus 264 l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 264 LQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCCcEeCCCCEEEEEEec
Confidence 9999888 8888888764
No 156
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.50 E-value=3.7e-14 Score=112.05 Aligned_cols=70 Identities=24% Similarity=0.370 Sum_probs=63.8
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhc----C-------CeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeC
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~f----G-------~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFe 355 (405)
..++|||+|||.++|+++|+++|+.| | .|..|++.++ ||||||+|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----------------------kg~afV~f~ 61 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----------------------KNFAFLEFR 61 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----------------------SSEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----------------------CcEEEEEcC
Confidence 56899999999999999999999999 8 9999998532 789999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEE
Q 015515 356 SVELAEKAIAELNDEGNWRSGLRVR 380 (405)
Q Consensus 356 s~E~A~kAv~~ln~~~~~~~glkV~ 380 (405)
+.++|++|+ .|++..+.++.|+|+
T Consensus 62 ~~~~a~~A~-~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 62 SVDETTQAM-AFDGIIFQGQSLKIR 85 (87)
T ss_dssp SHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CHHHHHHHH-hcCCCEECCeEEEEe
Confidence 999999999 999999888888876
No 157
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.50 E-value=5.9e-14 Score=125.90 Aligned_cols=85 Identities=20% Similarity=0.234 Sum_probs=74.2
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|++.+++.++. .+|||||+|++.++|++|++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~-----------------~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL-----------------SKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCS-----------------EEEEEEEEESSSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCC-----------------cceEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999987653322 28999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~ 387 (405)
.|++..+.++.|+|.+...+..
T Consensus 175 ~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 175 GLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp HHTTCEETTEECEEEESCCCCC
T ss_pred HcCCCEECCEEEEEEECCCCCC
Confidence 9999999888899998865543
No 158
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.50 E-value=1.9e-14 Score=116.17 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=69.3
Q ss_pred cceeEEeeCCCccccHHHHH----HHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~----~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (405)
..++|||+|||.++++++|+ ++|+.||.|..|++.+. ++ .+|||||+|++.++|++
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-------------~~-------~~g~afV~f~~~~~A~~ 66 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-------------LK-------MRGQAFVIFKEVSSATN 66 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-------------HH-------HTTCEEEEESSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-------------CC-------cCcEEEEEeCCHHHHHH
Confidence 56899999999999999999 99999999999988521 11 27899999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEcccC
Q 015515 363 AIAELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 363 Av~~ln~~~~~~~glkV~ll~~~ 385 (405)
|++.|++..++++.|+|.+...+
T Consensus 67 A~~~l~g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 67 ALRSMQGFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp HHHHHTTCEETTEECEEEECSSC
T ss_pred HHHHhCCCEECCcEEEEEEccCC
Confidence 99999999988888999887654
No 159
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.50 E-value=5.7e-14 Score=121.96 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=71.5
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
+++|||+|||.++|+++|+++|+.||.|..|++++++.++. .+|||||+|.+.++|++|++.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~-----------------~~g~afV~f~~~~~A~~a~~~l 64 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-----------------SLGYGFVNYIDPKDAEKAINTL 64 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCc-----------------ceeEEEEEECCHHHHHHHHHHc
Confidence 57999999999999999999999999999999987654322 3899999999999999999999
Q ss_pred cCCCCCCCceEEEEcccC
Q 015515 368 NDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 368 n~~~~~~~glkV~ll~~~ 385 (405)
++..+.++.|+|.+....
T Consensus 65 ~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 65 NGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp TTCEETTEECEEEECCCC
T ss_pred CCCccCCceEEEEecCCC
Confidence 999888888888877643
No 160
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.49 E-value=1.7e-14 Score=117.85 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=68.1
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++++++|+++|+.||.|..|+|.+++ +++ .+|||||+|++.++|++|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~-----------------~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGV-----------------SKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSC-----------------EEEEEEEEESSCCCHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCC-----------------ccceEEEEECCHHHHHHHHh
Confidence 457899999999999999999999999999999998765 221 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccC
Q 015515 366 ELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~ 385 (405)
++..+.+..|+|.....+
T Consensus 69 --~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 69 --SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp --CCCEETTEECEEEEEEEC
T ss_pred --CCCeECCEEEEEEECCcC
Confidence 666666777887766644
No 161
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.49 E-value=1.2e-13 Score=124.61 Aligned_cols=77 Identities=25% Similarity=0.293 Sum_probs=67.5
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
..+|||+||++++|+++|+++|++||.|++|+|...+ .+|||||||++.++|++|++.|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---------------------~rgfAFVeF~d~~~A~~Ai~~L 104 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---------------------NQFQALLQYADPVSAQHAKLSL 104 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---------------------SCEEEEEEESCHHHHHHHHHHS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 3579999999999999999999999999999985221 2789999999999999999999
Q ss_pred cCCCCCC--CceEEEEcccC
Q 015515 368 NDEGNWR--SGLRVRLMLRR 385 (405)
Q Consensus 368 n~~~~~~--~glkV~ll~~~ 385 (405)
++..+++ +.|+|.+...+
T Consensus 105 nG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 105 DGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp TTBCSSSSCSCEEEEECSSS
T ss_pred CCCEecCCCcEEEEEEecCC
Confidence 9999865 67888887755
No 162
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=7.8e-14 Score=126.58 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=72.0
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++++++|+++|+.||.|+.|+|.+++ ++. .+|||||+|++.++|++|++.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~-----------------~kG~afV~F~~~~~A~~Ai~~ 148 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGR-----------------SLGTADVHFERRADALKAMKQ 148 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSS-----------------CSCCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCC-----------------EeeEEEEEeCCHHHHHHHHHH
Confidence 35799999999999999999999999999999997664 221 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccC
Q 015515 367 LNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~ 385 (405)
|++..+.++.|+|.++...
T Consensus 149 lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 149 YKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp STTCBCSSSBCEEEEESSG
T ss_pred hCCCEECCEEEEEEEecCC
Confidence 9999998999999987643
No 163
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.47 E-value=5.1e-14 Score=122.17 Aligned_cols=82 Identities=22% Similarity=0.212 Sum_probs=68.7
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeE--------EEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--------IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~--------Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E 358 (405)
..++|||+|||.++|+++|+++|+.||.|.. |++... + ..+|||||+|.+.+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~---g-----------------~~~g~afV~f~~~~ 103 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKE---G-----------------RMKGQAFIGLPNEK 103 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEE---T-----------------TTEEEEEEECSSHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccC---C-----------------CcccEEEEEeCCHH
Confidence 4679999999999999999999999999876 333211 1 13899999999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEcccCCCC
Q 015515 359 LAEKAIAELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 359 ~A~kAv~~ln~~~~~~~glkV~ll~~~~~K 388 (405)
+|++|++.||+..+.++.|+|.++.....+
T Consensus 104 ~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 104 AAAKALKEANGYVLFGKPMVVQFARSARPK 133 (143)
T ss_dssp HHHHHHHHHTTBEETTEECEEEECCCSCC-
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCCCCc
Confidence 999999999999998889999988765544
No 164
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.47 E-value=1.3e-13 Score=127.50 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=69.8
Q ss_pred cceeEEeeCCC-ccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 287 QSRIVVAENLP-EDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 287 ~~rtVyV~nLP-~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
..++|||+||+ +++|+++|+++|+.||.|.+|+|++++ +|||||+|++.++|++|++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~----------------------~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK----------------------PGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS----------------------TTCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC----------------------CCEEEEEECCHHHHHHHHH
Confidence 46799999999 899999999999999999999996431 7899999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccC
Q 015515 366 ELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~ 385 (405)
.||+..+.++.|+|.+...+
T Consensus 61 ~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 61 HLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp HHTTCEETTEECEEEECSCS
T ss_pred HhCCCEECCceEEEEEccCC
Confidence 99999999999999987643
No 165
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.47 E-value=1.5e-13 Score=124.94 Aligned_cols=81 Identities=21% Similarity=0.201 Sum_probs=69.7
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|+|++++.++. .+|||||+|++.++|++|++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~A~~ 88 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMK-----------------HKGFAFVEYEVPEAAQLALE 88 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-C-----------------CCSEEEEEESSHHHHHHHHH
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCc-----------------cCceEEEEeCCHHHHHHHHH
Confidence 4578999999999999999999999999999999987653322 28999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcc
Q 015515 366 ELNDEGNWRSGLRVRLML 383 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~ 383 (405)
.|++..+.++.|+|....
T Consensus 89 ~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 89 QMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHSSCCCC-CCCEEECCS
T ss_pred HccCCeeCCeeEEEecCC
Confidence 999999888888887554
No 166
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.47 E-value=8.2e-14 Score=121.52 Aligned_cols=82 Identities=24% Similarity=0.313 Sum_probs=71.3
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|++.+++.++. .+|||||+|.+.++|++|++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~-----------------~~g~afV~f~~~~~A~~a~~~ 64 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGY-----------------SYGYAFVDFTSEMDSQRAIKV 64 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTE-----------------ECSEEEEEESSHHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCc-----------------cceEEEEEECCHHHHHHHHHh
Confidence 357999999999999999999999999999999976643221 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccC
Q 015515 367 LNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~ 385 (405)
|++..+.++.|+|.+....
T Consensus 65 l~~~~~~g~~l~v~~~~~~ 83 (168)
T 1b7f_A 65 LNGITVRNKRLKVSYARPG 83 (168)
T ss_dssp HTTCEETTEECEEEECCCC
T ss_pred cCCCEeCCcEEEEEecCCC
Confidence 9999888888888876543
No 167
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=6.8e-14 Score=111.43 Aligned_cols=73 Identities=22% Similarity=0.245 Sum_probs=57.5
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|+|.++ .||||||+|++.++|++|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~~--- 58 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----------------------FRAFAFVTFADDQIAQSL--- 58 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----------------------CCSCCEEECSCHHHHHHT---
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----------------------CCCEEEEEECCHHHHHHH---
Confidence 4689999999999999999999999999999998532 288999999999999864
Q ss_pred HcCCCCCCCceEEEEcccC
Q 015515 367 LNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~ 385 (405)
++..+...+++|++...+
T Consensus 59 -~~~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 59 -CGEDLIIKGISVHISNAE 76 (88)
T ss_dssp -TTCEEEETTEEEEEECCC
T ss_pred -hcCCceeCCEEEEEEecC
Confidence 333333345555554443
No 168
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.2e-13 Score=119.74 Aligned_cols=80 Identities=21% Similarity=0.288 Sum_probs=70.5
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln 368 (405)
|+|||+|||.++|+++|+++|+.||.|..|++++++. + ..+|||||+|.+.++|++|++.|+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~-----------------~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-N-----------------KNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-------------------CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-C-----------------CCCCEEEEEeCCHHHHHHHHHHcC
Confidence 6899999999999999999999999999999987642 1 138999999999999999999999
Q ss_pred CCCCCCCceEEEEcccCC
Q 015515 369 DEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 369 ~~~~~~~glkV~ll~~~~ 386 (405)
+..+.++.|+|.......
T Consensus 63 ~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 63 GKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp TCEETTEECEEEECCCCC
T ss_pred CCccCCCeeEEEEcCCCC
Confidence 999888888998775443
No 169
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.46 E-value=3.8e-13 Score=121.43 Aligned_cols=76 Identities=25% Similarity=0.320 Sum_probs=68.4
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcC-CeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG-~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
.++|||+|||.++|+++|+++|+.|| .|..|++..+ .+|+|||+|++.++|.+|++.
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~A~~~ 177 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------------------DRKMALIQMGSVEEAVQALID 177 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----------------------TSSCEEEECSSHHHHHHHHHH
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----------------------CCcEEEEEeCCHHHHHHHHHH
Confidence 67999999999999999999999999 9999999532 178999999999999999999
Q ss_pred HcCCCCC-CCceEEEEcccC
Q 015515 367 LNDEGNW-RSGLRVRLMLRR 385 (405)
Q Consensus 367 ln~~~~~-~~glkV~ll~~~ 385 (405)
|++..+. ++.|+|.+...+
T Consensus 178 l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 178 LHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HTSSCCSSCCSCCEEEECCC
T ss_pred hcCCccCCCCeEEEEeeccc
Confidence 9999988 788999987643
No 170
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=8.4e-14 Score=118.55 Aligned_cols=75 Identities=19% Similarity=0.283 Sum_probs=63.3
Q ss_pred cceeEEe--eCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 287 QSRIVVA--ENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 287 ~~rtVyV--~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
..++||| +||++++|+++|+++|++||.|..|.|.. .||||||+|++.++|++|+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----------------------~rgfaFV~f~~~~~A~~Ai 80 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKRAY 80 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----------------------TCSCEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHHH
Confidence 3578999 67999999999999999999999998741 1789999999999999999
Q ss_pred HHHcCCCC-----CCCceEEEEccc
Q 015515 365 AELNDEGN-----WRSGLRVRLMLR 384 (405)
Q Consensus 365 ~~ln~~~~-----~~~glkV~ll~~ 384 (405)
+.||+..+ .+..|.|.++..
T Consensus 81 ~~lnG~~~~~~lg~g~~l~v~~a~~ 105 (114)
T 2cq2_A 81 VTLNGKEVVDDLGQKITLYLNFVEK 105 (114)
T ss_dssp HHTTTCEEECTTSCEEECEEEEESC
T ss_pred HHhCCCEEccccCCCcEEEEEeccc
Confidence 99999865 233477777654
No 171
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.46 E-value=7.4e-14 Score=111.51 Aligned_cols=75 Identities=25% Similarity=0.244 Sum_probs=67.2
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++++++|+++|++| .|..|++. + .+|||||+|++.++|++|++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~---------------------~~g~afV~f~~~~~a~~Ai~~ 59 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--R---------------------NKRTAFVTLLNGEQAQNAIQM 59 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--G---------------------GGTEEEECCSCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--C---------------------CCcEEEEEECCHHHHHHHHHH
Confidence 45799999999999999999999999 99999883 1 289999999999999999999
Q ss_pred HcCCCCCCCceEEEEcccC
Q 015515 367 LNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 367 ln~~~~~~~glkV~ll~~~ 385 (405)
|++..+.++.|+|.+....
T Consensus 60 l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 60 FHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp HTTEEETTEEEEEEECCCC
T ss_pred hCCCeECCcEEEEEEcCCC
Confidence 9999988888999887543
No 172
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.45 E-value=2e-13 Score=130.66 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=70.9
Q ss_pred hcceeEEeeCCCcc-ccHHHHHHHHhhcCCeeEEEEecCCC-CCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHH
Q 015515 286 LQSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQT-SGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (405)
Q Consensus 286 ~~~rtVyV~nLP~d-~t~e~L~~~Fs~fG~V~~Vri~~pk~-s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kA 363 (405)
...++|||+|||.+ +|+++|+++|+.||.|..|++.++.. ++ ..+|||||+|++.++|.+|
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg-----------------~~~g~afV~F~~~~~A~~A 270 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHS-----------------FNNCCAFMVFENKDSAERA 270 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC--------------------CCCEEEEEEESSHHHHHHH
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCC-----------------CCceEEEEEeCCHHHHHHH
Confidence 35679999999999 99999999999999999999976542 11 1389999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEcccC
Q 015515 364 IAELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 364 v~~ln~~~~~~~glkV~ll~~~ 385 (405)
+ .|++..++++.|+|.++..|
T Consensus 271 ~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 271 L-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp G-GGTTEEETTEEEEEEECCCC
T ss_pred H-HhcCCEECCcEEEEEEecCC
Confidence 9 99999998888999987654
No 173
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.45 E-value=1.3e-13 Score=111.01 Aligned_cols=72 Identities=22% Similarity=0.281 Sum_probs=56.6
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
....+|||+|||+++|+++|+++|++||.|..|+|.++ .||||||+|++.++|++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----------------------srGfaFV~F~~~~~A~~--- 63 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----------------------FRAFAFVTFADDKVAQS--- 63 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----------------------CCSEEEEEESCHHHHHH---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----------------------CCCEEEEEECCHHHHHH---
Confidence 35679999999999999999999999999999998642 28999999999999983
Q ss_pred HHcCCCCCCCceEEEEcc
Q 015515 366 ELNDEGNWRSGLRVRLML 383 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~ 383 (405)
|++.....++.+|.+..
T Consensus 64 -~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 64 -LCGEDLIIKGISVHISN 80 (89)
T ss_dssp -HTTCEEEETTEEEEEEE
T ss_pred -HcCCCcccCCEEEEEEE
Confidence 45555444454544443
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.45 E-value=3e-13 Score=118.50 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=67.0
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
+.++|||+|||.++|+++|+++|+.||.|..|++++++.++.. ..+|||||+|.+.++|++|++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~---------------~~~g~afV~f~~~~~A~~A~~~ 66 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPP---------------QSKGCCFVTFYTRKAALEAQNA 66 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSC---------------EEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCC---------------CcceEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999999877543200 1389999999999999999999
Q ss_pred HcCCCCC---CCceEEEEcc
Q 015515 367 LNDEGNW---RSGLRVRLML 383 (405)
Q Consensus 367 ln~~~~~---~~glkV~ll~ 383 (405)
|++..+. ...++|....
T Consensus 67 l~~~~~~~~~~~~~~~~~~~ 86 (175)
T 3nmr_A 67 LHNMKVLPGMHHPIQMKPAD 86 (175)
T ss_dssp HTTTCCCTTCSSCCEEEECG
T ss_pred hcCcEEccCCccceEEcccc
Confidence 9987655 2345555544
No 175
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.45 E-value=3e-13 Score=119.31 Aligned_cols=111 Identities=18% Similarity=0.216 Sum_probs=79.1
Q ss_pred HHHHHHHhhccccceeeccccccccCCCCcchhhhhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCC
Q 015515 250 HSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGG 329 (405)
Q Consensus 250 ~~~I~eAL~~S~~LeVsedg~kVRR~~Pl~e~~~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~ 329 (405)
.+.+..||+ .+...+......|.+..+... ......++|||+|||.++|+++|+++|+.||.|..+ ..++
T Consensus 64 ~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~--~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~-- 133 (175)
T 1fje_B 64 AEDLEKALE-LTGLKVFGNEIKLEKPKGRDS--KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDG-- 133 (175)
T ss_dssp HHHHHHHHH-GGGEEETTEEEEEECCCCSSC--STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSS--
T ss_pred HHHHHHHHh-cCCCEeCCeEEEEecCCCccc--cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCC--
Confidence 344555553 333344433333333332211 123457899999999999999999999999988776 1111
Q ss_pred CCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEcccC
Q 015515 330 ASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 330 ~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~glkV~ll~~~ 385 (405)
..+|||||+|++.++|.+|++.|++..+.++.|+|.++..|
T Consensus 134 ---------------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 134 ---------------KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp ---------------SCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ---------------CCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 13899999999999999999999999988888999887654
No 176
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.3e-13 Score=114.08 Aligned_cols=67 Identities=19% Similarity=0.137 Sum_probs=55.9
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||+++|+++|+++|++||.|. ++++.++.+.. .| ..||||||+|++.++|++|++.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~-----------~g---~~~G~aFV~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKS-----------YF---PPKGYAFLLFQEESSVQALIDA 71 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCC-----------CS---CTTSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCC-----------CC---CcccEEEEEECCHHHHHHHHHh
Confidence 468999999999999999999999999999 87766543210 01 1389999999999999999999
Q ss_pred Hc
Q 015515 367 LN 368 (405)
Q Consensus 367 ln 368 (405)
|+
T Consensus 72 ~~ 73 (114)
T 2dnl_A 72 CL 73 (114)
T ss_dssp SE
T ss_pred hh
Confidence 84
No 177
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=4.3e-14 Score=121.50 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=65.6
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCe----eEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSV----KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V----~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (405)
..++|||+|||+++|+++|+++|+.||.| ..|+|++++ +++ .+|||||+|++.++|++
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr-----------------~~G~aFV~F~~~~~A~~ 83 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGR-----------------PTGDAFVLFACEEYAQN 83 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSC-----------------EEEEEEECCSSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCC-----------------EeeEEEEEECCHHHHHH
Confidence 45799999999999999999999999975 689998663 221 28999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEcc
Q 015515 363 AIAELNDEGNWRSGLRVRLML 383 (405)
Q Consensus 363 Av~~ln~~~~~~~glkV~ll~ 383 (405)
||+. ++..++++.|+|....
T Consensus 84 Al~~-~~~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 84 ALRK-HKDLLGKRYIELFRST 103 (123)
T ss_dssp HHTT-TTEESSSCEECCEEEC
T ss_pred HHHh-CCCeeCCeEEEEEECC
Confidence 9996 8877777777776654
No 178
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.44 E-value=2.1e-13 Score=118.70 Aligned_cols=75 Identities=25% Similarity=0.278 Sum_probs=64.8
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccE-EEEEeCCHHHHHHHHHHH
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLH-AFVEYESVELAEKAIAEL 367 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~-aFVEFes~E~A~kAv~~l 367 (405)
-.|||+||++.+|+++|+++|++||.|.+|+|... .+|| |||||++.++|++|++.|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----------------------~~gfqAFVef~~~~~A~~Ai~~L 86 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----------------------NNQFQALLQYADPVSAQHAKLSL 86 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----------------------TTEEEEEEEESCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----------------------CCCcEEEEEECCHHHHHHHHHHc
Confidence 47899999999999999999999999999988531 1567 999999999999999999
Q ss_pred cCCCCCC--CceEEEEcccC
Q 015515 368 NDEGNWR--SGLRVRLMLRR 385 (405)
Q Consensus 368 n~~~~~~--~glkV~ll~~~ 385 (405)
|+..+.+ ..|+|.+...+
T Consensus 87 nG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 87 DGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp TTCEEETTEEEEEEEECSCS
T ss_pred CCCeecCCCcEEEEEecCCC
Confidence 9998877 56777776543
No 179
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.44 E-value=7.3e-14 Score=120.71 Aligned_cols=78 Identities=24% Similarity=0.286 Sum_probs=65.5
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCee--EEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVK--TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~--~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
..++|||+|||+++|+++|+++|+.| .|. .|+|++++. ++ .||||||+|++.++|++||
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-Gr-----------------srGfaFV~F~~~e~A~~Al 101 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GK-----------------ITGEAFVQFASQELAEKAL 101 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SS-----------------SCSEEEEEESSTTHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CC-----------------CceEEEEEECCHHHHHHHH
Confidence 45799999999999999999999999 566 899877653 22 3899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEccc
Q 015515 365 AELNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~~ 384 (405)
+. ++..+.++.|+|.....
T Consensus 102 ~~-~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 102 GK-HKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp TT-TTCCBTTBCCCCEEECH
T ss_pred HH-CCCEECCEEEEEEECCH
Confidence 85 56777788888876643
No 180
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.44 E-value=1.9e-13 Score=122.29 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=70.0
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|++++++.++. .+|||||+|.+.++|++|++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~A~~A~~ 73 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKR-----------------SRGFGFVTYATVEEVDAAMN 73 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC-----------------EEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCC-----------------ccceEEEEeCCHHHHHHHHh
Confidence 4578999999999999999999999999999999987754332 28999999999999999998
Q ss_pred HHcCCCCCCCceEEEEcccC
Q 015515 366 ELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~ 385 (405)
. ++..+.++.|+|.....+
T Consensus 74 ~-~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 74 A-RPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp T-CSCEETTEECEEEECCC-
T ss_pred c-CCCEECCEEeeeecccCc
Confidence 6 777777778888876544
No 181
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.43 E-value=3.6e-13 Score=114.83 Aligned_cols=77 Identities=25% Similarity=0.267 Sum_probs=68.2
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|| ++|+++|+++|+.||.|..|+|.+ .+|||||+|++.++|++|++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~-----------------------~kg~aFV~f~~~~~A~~Ai~ 91 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----------------------PRNCAFVTYEKMESADQAVA 91 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET-----------------------TTTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 35689999996 799999999999999999999841 28899999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~~ 387 (405)
.|++..+.++.|+|.+...+..
T Consensus 92 ~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 92 ELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp HHTTCBCSSCBCEEEECCSSCC
T ss_pred HhCCCEECCeEEEEEEeCCCCC
Confidence 9999999899999998876543
No 182
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=4.7e-13 Score=115.39 Aligned_cols=73 Identities=26% Similarity=0.256 Sum_probs=63.4
Q ss_pred eEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccE-EEEEeCCHHHHHHHHHHHc
Q 015515 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLH-AFVEYESVELAEKAIAELN 368 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~-aFVEFes~E~A~kAv~~ln 368 (405)
.|||+||++.+|+++|+++|++||.|+.|+|.. + .|| |||||++.++|++|++.|+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~----------------------~Gf~aFVef~~~~~A~~A~~~Ln 83 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R----------------------NGIQAMVEFESVLCAQKAKAALN 83 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S----------------------SSEEEEEEESSHHHHHHHHHHHT
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C----------------------CCCEEEEEECCHHHHHHHHHHhC
Confidence 578999999999999999999999999999852 1 365 9999999999999999999
Q ss_pred CCCCCC--CceEEEEcccC
Q 015515 369 DEGNWR--SGLRVRLMLRR 385 (405)
Q Consensus 369 ~~~~~~--~glkV~ll~~~ 385 (405)
+..+.+ +.|+|.++..+
T Consensus 84 G~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 84 GADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp TCCCBTTBSEEEEECCSCS
T ss_pred CCEecCCCeEEEEEEecCC
Confidence 998876 36788776544
No 183
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.42 E-value=7.8e-13 Score=126.12 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=68.2
Q ss_pred hcceeEEeeCCCccc---------cHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCC
Q 015515 286 LQSRIVVAENLPEDH---------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~---------t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes 356 (405)
...+||||+||+.++ ++++|+++|++||.|+.|+|+. .||||||+|++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----------------------~kG~AFV~F~~ 188 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----------------------SKNCGFVKFKY 188 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----------------------GGTEEEEEESS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----------------------CCCEEEEEeCC
Confidence 457899999999998 7999999999999999999963 28899999999
Q ss_pred HHHHHHHHHHHcCCCC------------CCCceEEEEcccCC
Q 015515 357 VELAEKAIAELNDEGN------------WRSGLRVRLMLRRG 386 (405)
Q Consensus 357 ~E~A~kAv~~ln~~~~------------~~~glkV~ll~~~~ 386 (405)
.++|++|++.|++..+ .++.|+|+++....
T Consensus 189 ~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 189 QANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp HHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred HHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 9999999999999988 56789999887543
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.39 E-value=1.2e-12 Score=121.94 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=70.7
Q ss_pred hcceeEEeeCCCc-cccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 286 LQSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 286 ~~~rtVyV~nLP~-d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
...++|||+|||. ++++++|+++|+.||.|..|++++++ +|||||+|.+.++|++|+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----------------------~g~afV~F~~~~~A~~Ai 89 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLAM 89 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----------------------SCCEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----------------------CCEEEEEECCHHHHHHHH
Confidence 3578999999999 99999999999999999999997542 689999999999999999
Q ss_pred HHHcCCCCCCCceEEEEcccC
Q 015515 365 AELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~~~ 385 (405)
+.|++..+.++.|+|.+...+
T Consensus 90 ~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 90 SHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp HHHTTCBCSSSBCEEECCSCC
T ss_pred HHhCCCeECCeEEEEEEecCc
Confidence 999999998999999987654
No 185
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.39 E-value=8.3e-13 Score=119.14 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=69.9
Q ss_pred cceeEEeeCCCc-cccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 287 ~~rtVyV~nLP~-d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
.+++|||+|||. ++++++|+++|+.||.|..|++.+++ +|||||+|.+.++|++|++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----------------------~g~afV~f~~~~~a~~A~~ 59 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLAMS 59 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----------------------SSCCEEECTTTHHHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHH
Confidence 468999999999 99999999999999999999996532 6799999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccC
Q 015515 366 ELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~ 385 (405)
.|++..+.++.|+|.+....
T Consensus 60 ~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 60 HLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp HHTTCCCSSCCCEEEECCCC
T ss_pred HhCCCeecCeEEEEEEecCC
Confidence 99999998899999987654
No 186
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.38 E-value=1.2e-12 Score=109.22 Aligned_cols=83 Identities=17% Similarity=0.154 Sum_probs=68.5
Q ss_pred hcceeEEeeCCCc-----cccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHH
Q 015515 286 LQSRIVVAENLPE-----DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (405)
Q Consensus 286 ~~~rtVyV~nLP~-----d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A 360 (405)
..+++|++.|+-. +.++++|++.|++||.|..|+|.+++.+++ ..+|||||+|++.++|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~----------------~~~G~~FV~f~~~~~A 69 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPD----------------DEAVRIFLEFERVESA 69 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCT----------------TTSEEEEEEESSHHHH
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCC----------------CCcEEEEEEECCHHHH
Confidence 3578999999952 346899999999999999999987643211 1289999999999999
Q ss_pred HHHHHHHcCCCCCCCceEEEEccc
Q 015515 361 EKAIAELNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 361 ~kAv~~ln~~~~~~~glkV~ll~~ 384 (405)
.+|++.||+..+.++.|+|.++..
T Consensus 70 ~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 70 IKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp HHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHHHCCCEECCcEEEEEEcCH
Confidence 999999999999999999998754
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.38 E-value=2.4e-12 Score=122.70 Aligned_cols=113 Identities=16% Similarity=0.164 Sum_probs=85.9
Q ss_pred CHHHHHHHhhccccceeeccccccccCCCCcchhhhhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCC
Q 015515 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (405)
Q Consensus 249 d~~~I~eAL~~S~~LeVsedg~kVRR~~Pl~e~~~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~ 328 (405)
+.+.+..|++..+...+......|... ...++|||+|||.++|+++|+++|+.||.|..|++++++.++.
T Consensus 66 ~~~~A~~A~~~l~~~~~~g~~i~v~~~----------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~ 135 (284)
T 3smz_A 66 NGEQAEAAINAFHQSRLRERELSVQLQ----------PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQ 135 (284)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEC----------CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC
T ss_pred CHHHHHHHHHHcCCCeeCCeEEEEEec----------CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCc
Confidence 455566666544433443222222221 2457999999999999999999999999999999987754332
Q ss_pred CCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEcccCCCC
Q 015515 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRRGSK 388 (405)
Q Consensus 329 ~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~glkV~ll~~~~~K 388 (405)
.+|||||+|.+.++|.+|++.|++..+.++.|+|.+...+...
T Consensus 136 -----------------~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~ 178 (284)
T 3smz_A 136 -----------------SKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT 178 (284)
T ss_dssp -----------------EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC
T ss_pred -----------------cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC
Confidence 3899999999999999999999999988888999888765433
No 188
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.38 E-value=3.1e-13 Score=117.54 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=67.5
Q ss_pred eeEEeeCC----CccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCC----HHH-
Q 015515 289 RIVVAENL----PEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES----VEL- 359 (405)
Q Consensus 289 rtVyV~nL----P~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes----~E~- 359 (405)
..|||+|| ++++++++|+++|+.||+|..++++.|+.++.. +|||||+|.+ .++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~s-----------------lGfgfVef~d~~g~~d~a 65 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALP-----------------LHVYLIKYASSDGKINDA 65 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCE-----------------EEEEEEECC------CCH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCce-----------------eeEEEEEECCCCCCcchH
Confidence 58999999 999999999999999999999999999887653 8999999996 333
Q ss_pred ---HHHHHH--HHcCCCCCCCceEEEEcc
Q 015515 360 ---AEKAIA--ELNDEGNWRSGLRVRLML 383 (405)
Q Consensus 360 ---A~kAv~--~ln~~~~~~~glkV~ll~ 383 (405)
|.+|++ .|++..+.++.|+|.|-.
T Consensus 66 ~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 66 AKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp HHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred HHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 899988 778988888889998743
No 189
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.37 E-value=4.6e-13 Score=116.83 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=62.1
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
++++|||+|||.++|+++|+++|+.||.|..|++++++.+++ .+|||||+|++.++|++|++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~-----------------~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGR-----------------SRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSS-----------------CCSCEEEEESSTHHHHHHHHS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCC-----------------ccceEEEEEccHHHHHHHHhc
Confidence 468999999999999999999999999999999987654332 389999999999999999985
Q ss_pred HcCCCCCCCceEEEE
Q 015515 367 LNDEGNWRSGLRVRL 381 (405)
Q Consensus 367 ln~~~~~~~glkV~l 381 (405)
+..+.++.|+|..
T Consensus 65 --~~~~~g~~i~v~~ 77 (167)
T 2cjk_A 65 --QHILDGKVIDPKR 77 (167)
T ss_dssp --CCEETTEECCCEE
T ss_pred --ccccCCeEccccc
Confidence 2334444455544
No 190
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.37 E-value=1.4e-12 Score=124.21 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=70.7
Q ss_pred hcceeEEeeCCCccccHHHHH----HHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~----~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~ 361 (405)
...++|||+|||.++|+++|+ ++|+.||.|..|++.+.+ ..||||||+|++.++|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~--------------------~~~g~afV~f~~~~~a~ 66 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL--------------------KMRGQAFVIFKEVSSAT 66 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCC--------------------CcceEEEEEECCHHHHH
Confidence 357899999999999999977 899999999999986421 13899999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEcccCC
Q 015515 362 KAIAELNDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 362 kAv~~ln~~~~~~~glkV~ll~~~~ 386 (405)
+|++.|++..++++.|+|.+...+.
T Consensus 67 ~A~~~l~g~~~~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 67 NALRSMQGFPFYDKPMRIQYAKTDS 91 (282)
T ss_pred HHHHHhcCCeeCCcEEEEEEeccCc
Confidence 9999999999999999999876544
No 191
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-12 Score=107.86 Aligned_cols=71 Identities=18% Similarity=0.305 Sum_probs=63.1
Q ss_pred eEEeeCCCccccHHH----HHHHHhhc-CCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 290 IVVAENLPEDHCHQN----LMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 290 tVyV~nLP~d~t~e~----L~~~Fs~f-G~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
+|||+|||+++++++ |+++|+.| |+|..|. .|+|||+|++.|+|++|+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------------------------gG~AfV~F~~~esA~~A~ 63 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------------------------GCSAILRFINQDSAERAQ 63 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------------------------TTCEEEEESSHHHHHHHH
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------------------------cCEEEEEECCHHHHHHHH
Confidence 499999999999887 56899999 5999881 379999999999999999
Q ss_pred HHHcCCCCCCCceEEEEcccCCC
Q 015515 365 AELNDEGNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~~~~~ 387 (405)
+.|++..+.++.|+|.++..+..
T Consensus 64 ~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 64 KRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp HHHTTCCSSSSCCEEESSCCSCC
T ss_pred HHhcCCccCCceEEEEecCCCcc
Confidence 99999999999999998876543
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.36 E-value=1.3e-12 Score=124.42 Aligned_cols=84 Identities=30% Similarity=0.290 Sum_probs=72.9
Q ss_pred hcceeEEeeCCCccc-cHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDH-CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~-t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
...++|||+|||.++ |+++|+++|+.||.|..|+|.++.+ + ..+|+|||+|++.++|.+|+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~-g-----------------~~~g~afV~f~~~~~A~~A~ 243 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD-G-----------------QLKGFAVLEYETAEMAEEAQ 243 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS-C-----------------CEEEEEEEECSSHHHHHHHH
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC-C-----------------CcccEEEEEeCCHHHHHHHH
Confidence 457899999999995 9999999999999999999976531 1 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEcccCCC
Q 015515 365 AELNDEGNWRSGLRVRLMLRRGS 387 (405)
Q Consensus 365 ~~ln~~~~~~~glkV~ll~~~~~ 387 (405)
+.|++..+.++.|+|.+...+..
T Consensus 244 ~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 244 QQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHTTCEETTEECEEEECCSSSC
T ss_pred HHhCCCccCCeEEEEEEecCCCc
Confidence 99999999888899998865543
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.33 E-value=3.8e-12 Score=120.90 Aligned_cols=82 Identities=21% Similarity=0.228 Sum_probs=68.1
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
..++|||+|||.++|+++|+++|+.||.|..|++.++. +++ .+|||||+|++.++|.+|++.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~-----------------~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGR-----------------ATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSC-----------------EEEEEEEEESSHHHHHHHHHH
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCC-----------------cCcEEEEEeCCHHHHHHHHHH
Confidence 35799999999999999999999999999999998763 221 289999999999999999999
Q ss_pred HcCCCCC----CCceEEEEcccCC
Q 015515 367 LNDEGNW----RSGLRVRLMLRRG 386 (405)
Q Consensus 367 ln~~~~~----~~glkV~ll~~~~ 386 (405)
|++..+. ++.|+|..+....
T Consensus 157 l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 157 CGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHSCEESSSSCCBCEEEECCCEE
T ss_pred hcCCeEEecCCCceEEEeeccccC
Confidence 9654332 5678888776543
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=9.6e-12 Score=103.89 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=65.5
Q ss_pred cceeEEeeCCC--ccc---------cHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeC
Q 015515 287 QSRIVVAENLP--EDH---------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (405)
Q Consensus 287 ~~rtVyV~nLP--~d~---------t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFe 355 (405)
.+++|+|.||- .++ ++++|+++|++||.|..|.| .++. .+|||||+|+
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~--------------------~~G~afV~f~ 72 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH--------------------PDGVASVSFR 72 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC--------------------TTCEEEEECS
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC--------------------CCEEEEEEEC
Confidence 57899999993 321 36899999999999999976 3321 2899999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEEEcccCC
Q 015515 356 SVELAEKAIAELNDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 356 s~E~A~kAv~~ln~~~~~~~glkV~ll~~~~ 386 (405)
+.++|++|++.||+..+.++.|+|.++..+.
T Consensus 73 ~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 73 DPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred CHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 9999999999999999888889999886543
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.29 E-value=4.9e-12 Score=120.14 Aligned_cols=75 Identities=27% Similarity=0.301 Sum_probs=67.8
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..|++.++ +|||||+|.+.++|++|+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----------------------kg~afV~f~~~~~A~~A~~ 76 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----------------------RGFGFIRLESRTLAEIAKA 76 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----------------------TTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----------------------CcEEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999999999999532 7899999999999999999
Q ss_pred HHcCCCCCCCceEEEEcc
Q 015515 366 ELNDEGNWRSGLRVRLML 383 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~ 383 (405)
.|++..+.++.|+|.+..
T Consensus 77 ~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 77 ELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp HHTTCEETTEECEEEECC
T ss_pred HcCCcEECCceeEeeecc
Confidence 999998888888888654
No 196
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.28 E-value=7.1e-12 Score=115.87 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=61.0
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCe--eEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSV--KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V--~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
.++|||+|||.++|+++|+++|+.||.| ..|++..++ + ..+|||||+|++.++|.+|+.
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~-----------------~~~g~gfV~f~~~~~A~~Ai~ 183 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--S-----------------ERSSSGLLEWDSKSDALETLG 183 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--S-----------------SSSEEEEEECSSHHHHHHHHH
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--C-----------------CCceEEEEEeCCHHHHHHHHH
Confidence 4689999999999999999999999999 899986542 1 016899999999999999999
Q ss_pred HHcCCCCCCCc
Q 015515 366 ELNDEGNWRSG 376 (405)
Q Consensus 366 ~ln~~~~~~~g 376 (405)
.||+..+.+.+
T Consensus 184 ~lng~~~~g~~ 194 (205)
T 3tyt_A 184 FLNHYQMKNPN 194 (205)
T ss_dssp HHTTCEECCSS
T ss_pred HhCCCCccCCC
Confidence 99998877664
No 197
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.27 E-value=7.9e-12 Score=109.46 Aligned_cols=74 Identities=23% Similarity=0.333 Sum_probs=64.0
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhc----C-------CeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeC
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~f----G-------~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFe 355 (405)
+.++|||+|||.++|+++|+++|+.| | .|..+++.+ .+|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----------------------~~g~afV~f~ 59 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----------------------DKNFAFLEFR 59 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----------------------TTTEEEEEES
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----------------------CCCEEEEEeC
Confidence 46899999999999999999999999 6 677777642 2789999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEEEccc
Q 015515 356 SVELAEKAIAELNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 356 s~E~A~kAv~~ln~~~~~~~glkV~ll~~ 384 (405)
+.++|++|+ .|++..+.++.|+|.....
T Consensus 60 ~~~~A~~A~-~~~~~~~~g~~i~v~~~~~ 87 (172)
T 2g4b_A 60 SVDETTQAM-AFDGIIFQGQSLKIRRPHD 87 (172)
T ss_dssp SHHHHHHHG-GGTTCEETTEECEEECCSS
T ss_pred CHHHHHHHH-HhCCcEecCceeeecCCcc
Confidence 999999999 8999988888888876543
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.26 E-value=1.2e-11 Score=118.20 Aligned_cols=82 Identities=15% Similarity=0.134 Sum_probs=68.8
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcC-CeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG-~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
..++|||+|||.++|+++|+++|+.|| .|..|++.+++. + ..+|||||+|.+.++|.+|++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~-----------------~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-N-----------------TSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------------------------CCEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-C-----------------CcceEEEEEECCHHHHHHHHH
Confidence 468999999999999999999999999 999999976542 1 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccCC
Q 015515 366 ELNDEGNWRSGLRVRLMLRRG 386 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~~ 386 (405)
.|++..++++.|+|.+...+.
T Consensus 178 ~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 178 KLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp HHTTCEETTEECEEEECCCC-
T ss_pred HhCCCEeCCcEEEEEECCCCc
Confidence 999999988889998876443
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.25 E-value=1.4e-11 Score=102.70 Aligned_cols=83 Identities=20% Similarity=0.180 Sum_probs=66.7
Q ss_pred cceeEEeeCC--Cccc--------cHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCC
Q 015515 287 QSRIVVAENL--PEDH--------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (405)
Q Consensus 287 ~~rtVyV~nL--P~d~--------t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes 356 (405)
.++.|++.|+ +.+. .+++|++.|++||.|..|+|.+++.+.. -..+|||||+|++
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~---------------~~~~G~~fV~f~~ 68 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVE---------------VPGCGKIFVEFTS 68 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBC---------------CTTTTEEEEEESS
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCC---------------cCCcEEEEEEECC
Confidence 4678888887 3333 3578999999999999999977643210 0138999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEccc
Q 015515 357 VELAEKAIAELNDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 357 ~E~A~kAv~~ln~~~~~~~glkV~ll~~ 384 (405)
.++|++|++.||+..+.++.|+|.+...
T Consensus 69 ~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 69 VFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 9999999999999999999999998753
No 200
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=4.8e-11 Score=98.95 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=57.0
Q ss_pred ccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCce
Q 015515 298 EDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGL 377 (405)
Q Consensus 298 ~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~gl 377 (405)
.++|+++|+++|++||.|..|+|+. ..||||||+|++.++|++|++.+++ +.++.|
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~----------------------~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS----------------------KKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES----------------------SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc----------------------CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 5689999999999999999999962 0289999999999999999998654 346789
Q ss_pred EEEEcccCCCCCC
Q 015515 378 RVRLMLRRGSKPA 390 (405)
Q Consensus 378 kV~ll~~~~~K~~ 390 (405)
+|.++..+..+..
T Consensus 83 ~V~~a~~~~~~~~ 95 (100)
T 2d9o_A 83 KISWLEGQPQDAS 95 (100)
T ss_dssp EEECSSCCCCCCS
T ss_pred EEEEccCCCCCCC
Confidence 9998876655433
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.24 E-value=1.1e-11 Score=110.91 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=63.4
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhc----C-------CeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeC
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~f----G-------~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFe 355 (405)
.+++|||+|||.++|+++|+++|+.| | .|..+++.+ .+|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~-----------------------~~g~afV~F~ 59 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----------------------DKNFAFLEFR 59 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET-----------------------TTTEEEEEES
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC-----------------------CCCEEEEEeC
Confidence 46899999999999999999999999 4 556665521 2789999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEEEcccC
Q 015515 356 SVELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 356 s~E~A~kAv~~ln~~~~~~~glkV~ll~~~ 385 (405)
+.++|++|+ .|++..+.++.|+|.....+
T Consensus 60 ~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 60 SVDETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (198)
T ss_dssp CSHHHHHHG-GGTTEEETTEEEEEECCCCC
T ss_pred CHHHHHHHH-HhcCCEEcCceEEEeCCCCC
Confidence 999999999 89999888888888876554
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.21 E-value=8.8e-12 Score=103.61 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=56.9
Q ss_pred eeCCCccccHHHHHHHH------------hhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHH
Q 015515 293 AENLPEDHCHQNLMKIF------------SAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (405)
Q Consensus 293 V~nLP~d~t~e~L~~~F------------s~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A 360 (405)
+.||+.++++++|++.| ++||.|..|+|.+++. + ..+|||||+|++.++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~-----------------~~~G~~fV~f~~~~~A 81 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-D-----------------HLVGNVYVKFRREEDA 81 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-S-----------------SSEEEEEEEESCHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-C-----------------CccEEEEEEECCHHHH
Confidence 45566666666665555 9999999999976532 1 1389999999999999
Q ss_pred HHHHHHHcCCCCCCCceEEEEc
Q 015515 361 EKAIAELNDEGNWRSGLRVRLM 382 (405)
Q Consensus 361 ~kAv~~ln~~~~~~~glkV~ll 382 (405)
++|++.||+..+.++.|+|.+.
T Consensus 82 ~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 82 EKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHHCCCEECCEEEEEEEc
Confidence 9999999999998888888764
No 203
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.21 E-value=2.9e-12 Score=112.97 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=65.0
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...++|||+|||.++|+++|+++|+.||.|..+.+ ++.. .+ ..+|||||+|++.++|++|+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~-~~~~----------~~-------~~~g~afV~f~~~~~a~~A~- 71 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAV-VDVR----------TG-------TNRKFGYVDFESAEDLEKAL- 71 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCC-CEEE----------EE-------TTTTEEEEEESSHHHHHHHH-
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEE-EECC----------CC-------ccccEEEEEECCHHHHHHHH-
Confidence 35789999999999999999999999998766322 1111 11 13899999999999999999
Q ss_pred HHcCCCCCCCceEEEEcccC
Q 015515 366 ELNDEGNWRSGLRVRLMLRR 385 (405)
Q Consensus 366 ~ln~~~~~~~glkV~ll~~~ 385 (405)
+|++..+.++.|+|.....+
T Consensus 72 ~l~g~~~~g~~l~v~~~~~~ 91 (175)
T 1fje_B 72 ELTGLKVFGNEIKLEKPKGR 91 (175)
T ss_dssp HGGGEEETTEEEEEECCCCS
T ss_pred hcCCCEeCCeEEEEecCCCc
Confidence 59999888888888876544
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.19 E-value=3.1e-11 Score=102.94 Aligned_cols=85 Identities=16% Similarity=0.173 Sum_probs=67.5
Q ss_pred hcceeEEeeCCC--cc---ccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHH
Q 015515 286 LQSRIVVAENLP--ED---HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (405)
Q Consensus 286 ~~~rtVyV~nLP--~d---~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A 360 (405)
..+++|++.|+- .+ -.+++|++.|++||.|..|+|.+++.+... . + ..+||+||+|++.++|
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~--------~--~---~~~G~~FV~F~~~e~A 84 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEE--------D--A---EIIVKIFVEFSIASET 84 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSST--------T--C---EEEEEEEEEESSHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCccc--------C--C---cceEEEEEEECCHHHH
Confidence 357899999983 22 246899999999999999999876431100 0 0 1279999999999999
Q ss_pred HHHHHHHcCCCCCCCceEEEEcc
Q 015515 361 EKAIAELNDEGNWRSGLRVRLML 383 (405)
Q Consensus 361 ~kAv~~ln~~~~~~~glkV~ll~ 383 (405)
.+|++.||+..+.++.|+|.++.
T Consensus 85 ~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 85 HKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp HHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHCCCEECCcEEEEEEcC
Confidence 99999999999999999999874
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.15 E-value=4e-11 Score=119.86 Aligned_cols=64 Identities=22% Similarity=0.314 Sum_probs=56.9
Q ss_pred cceeEEeeC--CCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHH
Q 015515 287 QSRIVVAEN--LPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (405)
Q Consensus 287 ~~rtVyV~n--LP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv 364 (405)
.+++|||+| |+.++|+++|+++|++||+|+.|+|.. +||||||+|++.|+|++|+
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----------------------~kgfaFV~f~~~~~A~~Ai 73 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKRAY 73 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----------------------TCSEEEEEESSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHHH
Confidence 467999998 578999999999999999999988731 2789999999999999999
Q ss_pred HHHcCCCCC
Q 015515 365 AELNDEGNW 373 (405)
Q Consensus 365 ~~ln~~~~~ 373 (405)
+.||+..+.
T Consensus 74 ~~lnG~~~~ 82 (345)
T 3tht_A 74 VTLNGKEVV 82 (345)
T ss_dssp HHTTTCEEE
T ss_pred HHhCCCccc
Confidence 999998763
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.13 E-value=1e-10 Score=99.14 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=62.9
Q ss_pred cceeEEeeCC--Ccc--------ccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCC
Q 015515 287 QSRIVVAENL--PED--------HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (405)
Q Consensus 287 ~~rtVyV~nL--P~d--------~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes 356 (405)
.+++|++.|+ +.+ ..+++|++.|++||.|..|.|.++. .+||+||+|++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---------------------~~G~~fV~f~~ 64 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---------------------AQGNVYVKCPS 64 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---------------------TTCCEEEECSS
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---------------------CcEEEEEEECC
Confidence 4677888887 222 1356899999999999999995431 17899999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEcc
Q 015515 357 VELAEKAIAELNDEGNWRSGLRVRLML 383 (405)
Q Consensus 357 ~E~A~kAv~~ln~~~~~~~glkV~ll~ 383 (405)
.++|++|++.||+..+.++.|+|.+..
T Consensus 65 ~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 65 IAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 999999999999999999999999864
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=3.4e-09 Score=90.98 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=63.0
Q ss_pred cceeEEeeCCCcc-ccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCC-HHHHHHHH
Q 015515 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES-VELAEKAI 364 (405)
Q Consensus 287 ~~rtVyV~nLP~d-~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes-~E~A~kAv 364 (405)
..+.|||+||+.+ ++.++|+++|+.||.|..|.+.++. -.|||+|.+ .++|.+|+
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----------------------~tgfVrf~~~~~~A~~av 73 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----------------------KEGIILFKEKAKEALGKA 73 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----------------------SEEEEEESSCHHHHHHHH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----------------------CEEEEEECCChHHHHHHH
Confidence 5679999999999 9999999999999999999996542 259999999 89999999
Q ss_pred HHHcCC--CCCCCceEEEEccc
Q 015515 365 AELNDE--GNWRSGLRVRLMLR 384 (405)
Q Consensus 365 ~~ln~~--~~~~~glkV~ll~~ 384 (405)
+.||+. .+.+..++++++..
T Consensus 74 ~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 74 KDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp HHTTTSCBCTTSSSEEEEECCH
T ss_pred HHhhcCCcEEeCcEEEEEECCC
Confidence 999754 34445678877764
No 208
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=8.4e-09 Score=84.20 Aligned_cols=76 Identities=17% Similarity=0.213 Sum_probs=61.6
Q ss_pred ceeEEeeCCCc----cc-c---HHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHH
Q 015515 288 SRIVVAENLPE----DH-C---HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVEL 359 (405)
Q Consensus 288 ~rtVyV~nLP~----d~-t---~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~ 359 (405)
..||+|.-.+. +. . ..+|.+.|+.||+|..||+..+ .+||+|++.++
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------------------------~~fVtF~d~~s 61 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------------------------KMWVTFLEGSS 61 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------------------------SEEEEESSHHH
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------------------------CEEEEECChHH
Confidence 35777665541 11 1 3679999999999999999643 27999999999
Q ss_pred HHHHHHHHcCCCCCCCceEEEEcccCCCCC
Q 015515 360 AEKAIAELNDEGNWRSGLRVRLMLRRGSKP 389 (405)
Q Consensus 360 A~kAv~~ln~~~~~~~glkV~ll~~~~~K~ 389 (405)
|.+|++ ||+..+.++.|+|++....+.+.
T Consensus 62 AlaAi~-mnG~~v~Gr~LkV~lkt~dW~~~ 90 (91)
T 2dnr_A 62 ALNVLS-LNGKELLNRTITIALKSPSGPSS 90 (91)
T ss_dssp HHHGGG-GTTCEETTEEEEEEECCCSSCSC
T ss_pred HHHHHh-cCCeEeCCeEEEEEeCCCCcccC
Confidence 999998 99999999999999998877763
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.61 E-value=6.2e-08 Score=89.49 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=58.9
Q ss_pred ccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEE
Q 015515 300 HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRV 379 (405)
Q Consensus 300 ~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~~~~~~glkV 379 (405)
..+++|.+.|++||.|..|.|+++...++. ....+|++||+|++.++|.+|++.||+..+.++.|+|
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~-------------~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~ 207 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEE-------------DAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 207 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSST-------------TCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCccc-------------CcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEE
Confidence 356789999999999999999876533211 0013899999999999999999999999999999999
Q ss_pred EEcc
Q 015515 380 RLML 383 (405)
Q Consensus 380 ~ll~ 383 (405)
.+..
T Consensus 208 ~~~~ 211 (222)
T 3dxb_A 208 EVYD 211 (222)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9875
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=1.4e-07 Score=77.53 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=57.3
Q ss_pred ceeEEeeCCCcc-----c-c---HHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHH
Q 015515 288 SRIVVAENLPED-----H-C---HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (405)
Q Consensus 288 ~rtVyV~nLP~d-----~-t---~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E 358 (405)
..||+|.-++.+ . . ..+|.+.|+.||+|..||+..+ -+||+|.+.+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------------------------~~fVtF~d~~ 69 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------------------------QMLVTFADSH 69 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------------------------EEEEECSCSH
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------------------------cEEEEEcChH
Confidence 468888876522 1 1 2569999999999999999744 2799999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEcc
Q 015515 359 LAEKAIAELNDEGNWRSGLRVRLML 383 (405)
Q Consensus 359 ~A~kAv~~ln~~~~~~~glkV~ll~ 383 (405)
+|.+|++ |++..+.++.|+|++..
T Consensus 70 sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 70 SALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHH-GGGSEETTEEEEEECCC
T ss_pred HHHHHHh-cCCeeeCCeEEEEeccC
Confidence 9999998 99999999999998653
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.79 E-value=5.2e-05 Score=63.83 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=64.1
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhc-----CCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAV-----GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~f-----G~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~ 361 (405)
..|||-+-|||..++...|+.+.+.| |.+..|-++-| .+-|+|||++...|-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----------------------H~GAivef~d~~~Ag 76 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----------------------FNGAIIIFRDSKFAA 76 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----------------------TTEEEEECSCHHHHH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----------------------CCceEEEEccchhhH
Confidence 46899999999999999999999999 99999988633 456999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEE
Q 015515 362 KAIAELNDEGNWRSGLRVRL 381 (405)
Q Consensus 362 kAv~~ln~~~~~~~glkV~l 381 (405)
||.-.|++..+.++.|+|.-
T Consensus 77 KasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 77 KMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp HHHHHHSSEEETTEEEEEEC
T ss_pred HHHhhcCCeeecCeEEEecC
Confidence 99999999998887787754
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.74 E-value=0.0066 Score=50.37 Aligned_cols=69 Identities=19% Similarity=0.187 Sum_probs=53.7
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhc-----CCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAV-----GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~f-----G~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~ 361 (405)
..++|.|.|||.++.++.|+-+|+.- |.|+.|... .+.|+|+|.+.+.|+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-------------------------~~~AvItF~d~~va~ 61 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-------------------------GCGGVLTFREPADAE 61 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-------------------------TTEEEEEESSHHHHH
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-------------------------CCcEEEEEcChHHHH
Confidence 35799999999999999999999872 688988763 246899999999999
Q ss_pred HHHHHHcCCCCCCCceEEEE
Q 015515 362 KAIAELNDEGNWRSGLRVRL 381 (405)
Q Consensus 362 kAv~~ln~~~~~~~glkV~l 381 (405)
+.++. ....+.+..|.|.-
T Consensus 62 rVL~k-~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 62 RVLAQ-ADHELHGAQLSLRP 80 (104)
T ss_dssp HHHTC-SCCBSSSSBCEEEE
T ss_pred HHhcC-CcceecCeEEEEEc
Confidence 88774 23445455677753
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.40 E-value=0.0059 Score=50.25 Aligned_cols=64 Identities=20% Similarity=0.330 Sum_probs=48.4
Q ss_pred eEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 015515 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~ 369 (405)
.+++ +||.+....+|+++|+.||-|. |+.+- ...|||.|.+.+.|..|++.++.
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wid------------------------DTsAlvvf~~~~~a~~al~~i~k 71 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWID------------------------DTSAFVSLSQPEQVQIAVNTSKY 71 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEE------------------------TTEEEEECSCHHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCEE-EEEEc------------------------CCeEEEEecCHHHHHHHHHhccc
Confidence 4555 9999999999999999999543 44431 34799999999999999998763
Q ss_pred CCCCCCceEEEEcc
Q 015515 370 EGNWRSGLRVRLML 383 (405)
Q Consensus 370 ~~~~~~glkV~ll~ 383 (405)
. ...+|+...
T Consensus 72 ~----~~y~i~ty~ 81 (100)
T 1whv_A 72 A----ESYRIQTYA 81 (100)
T ss_dssp C----CSSEEEEHH
T ss_pred C----CceEEEEhH
Confidence 2 235666543
No 214
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.36 E-value=0.0014 Score=67.82 Aligned_cols=60 Identities=22% Similarity=0.203 Sum_probs=44.0
Q ss_pred hhhhcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 015515 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (405)
Q Consensus 283 ~~~~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (405)
+++...|+|+|. ++.+.++.+|.++|++||.|.++-+..++ ..||.|||.+.+++..
T Consensus 48 r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----------------------g~~~~vef~~~~~~~~ 104 (464)
T 3pq1_A 48 RREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----------------------GLYAVVEFCQKESIGS 104 (464)
T ss_dssp HHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----------------------SEEEEEECC---CCHH
T ss_pred HHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----------------------CeEEEEEeCCHHHHHH
Confidence 344567899998 79999999999999999999999985321 4699999999999886
Q ss_pred HHH
Q 015515 363 AIA 365 (405)
Q Consensus 363 Av~ 365 (405)
++.
T Consensus 105 ~~~ 107 (464)
T 3pq1_A 105 LQN 107 (464)
T ss_dssp HHS
T ss_pred HHh
Confidence 643
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.26 E-value=0.014 Score=49.67 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=50.6
Q ss_pred hcceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHH
Q 015515 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (405)
Q Consensus 286 ~~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~ 365 (405)
...+.|.|-||+.+. .+.|.+.|++||+|...+. +. +..+..|.|+++.+|++||.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~---------------------~~NWihI~Y~s~~~A~rAL~ 77 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SN---------------------TGNWMHIRYQSKLQARKALS 77 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CS---------------------SSSEEEEEESSHHHHHHHHT
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CC---------------------CCCeEEEEeCCHHHHHHHHH
Confidence 356789999999885 6677788999999998886 21 14578999999999999998
Q ss_pred HHcCCCCC
Q 015515 366 ELNDEGNW 373 (405)
Q Consensus 366 ~ln~~~~~ 373 (405)
. |+..+.
T Consensus 78 k-NG~ii~ 84 (119)
T 1wwh_A 78 K-DGRIFG 84 (119)
T ss_dssp T-TTCEET
T ss_pred h-CCeEec
Confidence 6 776654
No 216
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.88 E-value=0.013 Score=48.58 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=58.4
Q ss_pred ceeEEeeCCCcccc-----HHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHH
Q 015515 288 SRIVVAENLPEDHC-----HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (405)
Q Consensus 288 ~rtVyV~nLP~d~t-----~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~k 362 (405)
..||+|.||+.++- .+.++++|..|+++......+- | + =+.|.|.+.|+|.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS--------------------F--R-Rirv~F~~~~~A~~ 61 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS--------------------F--K-RVRINFSNPLSAAD 61 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT--------------------T--T-EEEEECSSTTHHHH
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc--------------------c--e-EEEEEeCChHHHHH
Confidence 35899999987652 2578999999999887766521 1 1 26899999999999
Q ss_pred HHHHHcCCCCCCCceEEEEcc
Q 015515 363 AIAELNDEGNWRSGLRVRLML 383 (405)
Q Consensus 363 Av~~ln~~~~~~~glkV~ll~ 383 (405)
|-..|.+..+.+..|||-+..
T Consensus 62 AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 62 ARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp HHHTSTTSEETTEECEEECCC
T ss_pred HHHHhccceecCceeEEEecC
Confidence 999999999888888887654
No 217
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.81 E-value=0.021 Score=46.24 Aligned_cols=70 Identities=13% Similarity=0.042 Sum_probs=54.3
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHc
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln 368 (405)
..|+|++||..+|++++.+.++.+..+...+.+..+.+.+. .. -.-|||.|.+.|++....+.++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~------------~~---~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYP------------HM---YARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTT------------CC---CEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCC------------Cc---ceEEEEEeCCHHHHHHHHHHhC
Confidence 36899999999999999999999998877777543322110 00 2459999999999999999999
Q ss_pred CCCCC
Q 015515 369 DEGNW 373 (405)
Q Consensus 369 ~~~~~ 373 (405)
+..+.
T Consensus 67 g~~F~ 71 (91)
T 1uw4_A 67 GYVFL 71 (91)
T ss_dssp TCEEE
T ss_pred CcEEE
Confidence 86543
No 218
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.76 E-value=0.011 Score=48.71 Aligned_cols=55 Identities=24% Similarity=0.280 Sum_probs=44.1
Q ss_pred eEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcC
Q 015515 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~ 369 (405)
-||+-+||.+....+|+.+|+.||- ..|+.+- ...|||.|.+.+.|..|+..++.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fgg-v~I~Wid------------------------DTsAlvvf~~~~~a~~al~~i~~ 61 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGN-IQISWID------------------------DTSAFVSLSQPEQVKIAVNTSKY 61 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEE-EEEEEEE------------------------TTEEEEEEEEECHHHHHHHHHTT
T ss_pred eEEEEeCChhhhhHHHHHHHhccCC-EEEEEEc------------------------CCeEEEEecCHHHHHHHHHhccc
Confidence 3444499999999999999999994 3444431 34799999999999999998763
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.81 E-value=0.024 Score=48.66 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHcCCC
Q 015515 347 KLHAFVEYESVELAEKAIAELNDEG 371 (405)
Q Consensus 347 KG~aFVEFes~E~A~kAv~~ln~~~ 371 (405)
+||+||+|.+.++|++|++.+++..
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhhcccC
Confidence 8999999999999999999988643
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.15 E-value=0.034 Score=47.52 Aligned_cols=37 Identities=22% Similarity=0.085 Sum_probs=32.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHH-cCCCCCCCceEEEEccc
Q 015515 347 KLHAFVEYESVELAEKAIAEL-NDEGNWRSGLRVRLMLR 384 (405)
Q Consensus 347 KG~aFVEFes~E~A~kAv~~l-n~~~~~~~glkV~ll~~ 384 (405)
+|+++|||.+.++|++|++.| |+..+.+ .++|.....
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 899999999999999999999 8888877 777776543
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.23 E-value=0.13 Score=44.46 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=47.4
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeE-EEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~-Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
..|.|=|+|.+.+. .+.+.|++||.|.. +.+.++.. ... . ..++.+ +-..|.+.+...|+|++..+|.+||.+
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~-~~~-~-~~~~~k-~yP~f~g~NWikItYds~~~A~rAL~~- 81 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQ-AMT-V-GLQDRQ-FVPIFSGNSWTKITYDNPASAVDALLE- 81 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC---------------CCCCCEETTEEEEEBSSHHHHHHHHTT-
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeecccccccc-ccc-c-cccccc-ccCccCCCcEEEEEcCCHHHHHHHHHh-
Confidence 46778899877754 45567999999865 32211100 000 0 001000 112333467899999999999999985
Q ss_pred cCCCCCC
Q 015515 368 NDEGNWR 374 (405)
Q Consensus 368 n~~~~~~ 374 (405)
|+..+.+
T Consensus 82 NG~ii~G 88 (132)
T 3p3d_A 82 NGAVFNG 88 (132)
T ss_dssp TTCEETT
T ss_pred CCeEeCc
Confidence 7666544
No 222
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.17 E-value=0.16 Score=41.60 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=46.8
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~l 367 (405)
+-.|+|+.||..+|++++.+.++.+=.+...+.+..+.+. +. .. -.-|||.|.+.|+.....+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~----------~~--~~---~SRAYI~F~~~edv~~F~~~f 73 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSL----------YP--HL---YSRAYINFRNPDDILLFRDRF 73 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSS----------CC--SC---CCCCEEEESCHHHHHHHHHHS
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCC----------CC--Cc---ceEEEEEeCCHHHHHHHHHHc
Confidence 4579999999999999988777765444332222111110 00 01 134899999999999999998
Q ss_pred cCCCC
Q 015515 368 NDEGN 372 (405)
Q Consensus 368 n~~~~ 372 (405)
++..+
T Consensus 74 ~g~~F 78 (97)
T 2l08_A 74 DGYIF 78 (97)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 87643
No 223
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.92 E-value=1 Score=46.76 Aligned_cols=62 Identities=23% Similarity=0.363 Sum_probs=46.9
Q ss_pred EEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHHHcCC
Q 015515 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (405)
Q Consensus 291 VyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ln~~ 370 (405)
||+..|+..+...+|+++|+.||.|. |+.+ + ..+|||.|.+.+.|..+++.++..
T Consensus 442 vl~v~f~~~~~~~~i~~~fs~fg~v~-V~wi-d-----------------------dt~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 442 VLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWI-D-----------------------DTSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp EEEEECCTTCCHHHHHHHGGGGCCCE-EEEC-S-----------------------SSEEEEECSCHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCCEE-EEEE-c-----------------------CCeEEEEECCHHHHHHHHHHHHhC
Confidence 44445998888999999999999653 4432 1 347999999999999999999754
Q ss_pred CCCCCceEEEE
Q 015515 371 GNWRSGLRVRL 381 (405)
Q Consensus 371 ~~~~~glkV~l 381 (405)
.+++|+.
T Consensus 497 ----~~~~i~~ 503 (507)
T 3d45_A 497 ----ESYRIQT 503 (507)
T ss_dssp ----SSCEECS
T ss_pred ----CceEEEe
Confidence 3455543
No 224
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=86.24 E-value=0.49 Score=29.00 Aligned_cols=8 Identities=25% Similarity=0.679 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q 015515 80 PPAAAMVH 87 (405)
Q Consensus 80 pp~~~~~~ 87 (405)
||.+++..
T Consensus 5 PplPg~~g 12 (26)
T 2v8f_C 5 PPLPGVAS 12 (26)
T ss_pred CCCCCCCC
Confidence 33334444
No 225
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=76.82 E-value=1.2 Score=27.53 Aligned_cols=17 Identities=41% Similarity=0.763 Sum_probs=14.5
Q ss_pred ccccCCCCCCCCCCCCC
Q 015515 37 FSRLNAKAPEFVPTRNP 53 (405)
Q Consensus 37 ~~~~~~~ap~~~p~~~~ 53 (405)
.|+|-+.||||+|.+=.
T Consensus 3 ~S~LS~~ApeF~Psgys 19 (26)
T 1jh4_B 3 MSKLSVNAPEFYPSGYS 19 (26)
T ss_dssp CCCSSCCCSCCCCTTCC
T ss_pred ccccCcCCceeccCccc
Confidence 47888999999998765
No 226
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=76.26 E-value=1.4 Score=48.88 Aligned_cols=89 Identities=22% Similarity=0.314 Sum_probs=63.5
Q ss_pred CCChHHHHHHhhcccccccCCCCCCCHHHHh----hhcC--CCCCceecccccch-hhhHhhhcC------------HHH
Q 015515 192 GLNDESIQKVLNQVEYYFSDLNLATTDHLIR----FILK--DPEGYVPISTVASF-KKIKAIISS------------HSH 252 (405)
Q Consensus 192 ~~~~e~~~kI~kQvEfYFSD~NL~~D~fL~~----~i~k--~~eG~Vpi~~i~sF-kRmk~Lt~d------------~~~ 252 (405)
..++|..+.|+.+|+|.|+|+-|.-+.-|.. .+++ +-.|.||..+|+.+ -|+..+.+- +..
T Consensus 102 ~~~~~~~~~~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~ 181 (950)
T 3htx_A 102 LTVDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAISY 181 (950)
T ss_dssp CCHHHHHHHHHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHHHHHHCTHHHHCTHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhhhhhcCcccccChHHHHHH
Confidence 3457778999999999999997776644443 3333 35689999999998 345444431 256
Q ss_pred HHHHhhccccceeeccccccccCCCCcch
Q 015515 253 LASVLRKSSKLVVSEDGKKIKRQNPLTES 281 (405)
Q Consensus 253 I~eAL~~S~~LeVsedg~kVRR~~Pl~e~ 281 (405)
|.+|...+.-+.+++.. -|+|.+|.+..
T Consensus 182 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 209 (950)
T 3htx_A 182 VMKAAAKLADYIVASPH-GLRRKNAYPSE 209 (950)
T ss_dssp HHHHHHHCCSSEEEETT-EEEESSCCCHH
T ss_pred HHHHhhcCCCcEEeCCc-ccccCCCCCHH
Confidence 67777766556677776 99999998754
No 227
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=76.15 E-value=1.1 Score=36.36 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=0.0
Q ss_pred cceeEEeeCCCccccHHH
Q 015515 287 QSRIVVAENLPEDHCHQN 304 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~ 304 (405)
...+|||+||+.++|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 446799999999998864
No 228
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=74.80 E-value=0.54 Score=42.24 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=25.5
Q ss_pred CCChHHHHHHhhcccccccCCCCCCCHHHHhhhcC-----CC-C--Cceecccccc
Q 015515 192 GLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILK-----DP-E--GYVPISTVAS 239 (405)
Q Consensus 192 ~~~~e~~~kI~kQvEfYFSD~NL~~D~fL~~~i~k-----~~-e--G~Vpi~~i~s 239 (405)
.++.+.++.+.++. +|+...+..=..++.++.. +. + |+|..+.+..
T Consensus 30 ~l~~e~l~~l~~~t--~~s~~ei~~l~~~F~~~D~~~~~~d~~~~dG~I~~~E~~~ 83 (214)
T 2l4h_A 30 RLSKELLAEYQDLT--FLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS 83 (214)
T ss_dssp -CCHHHHHHHHSCC--SCCHHHHHHHHHHHHHHSCGGGCCHHHHTTSEECHHHHTT
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcccccccccccCCcCCHHHHHH
Confidence 36777777777653 4555444322223333322 22 4 9998887776
No 229
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=70.58 E-value=4.4 Score=40.13 Aligned_cols=23 Identities=13% Similarity=0.288 Sum_probs=18.8
Q ss_pred eeEEeeCCCccccHHHHHHHHhh
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSA 311 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~ 311 (405)
...+|+|||+..+..-|..++..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 46789999999998877777763
No 230
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=68.31 E-value=2.3 Score=38.50 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=33.8
Q ss_pred hcCCCCCceecccccchhhhH--hhhcCHHHHHHHhhcccc--ceeeccccccccC
Q 015515 224 ILKDPEGYVPISTVASFKKIK--AIISSHSHLASVLRKSSK--LVVSEDGKKIKRQ 275 (405)
Q Consensus 224 i~k~~eG~Vpi~~i~sFkRmk--~Lt~d~~~I~eAL~~S~~--LeVsedg~kVRR~ 275 (405)
+.+|.+|||.++.++. -+.+ ...-+.+.|.++++++++ .++++ .+||-.
T Consensus 22 L~ld~~G~v~v~~LL~-~~~~~~~~~~t~~~l~~vV~~~~K~Rf~l~~--~~IRA~ 74 (186)
T 1wfx_A 22 VRLTREGWARVSEVVE-GLRKAGWSWVEEWHIVGVALHDPKGRYELRN--GEIRAR 74 (186)
T ss_dssp CCCCTTCCEEHHHHHH-HHHHTTCTTCCHHHHHHHHHHCSSCCEEEET--TEEEES
T ss_pred CccCCCCCEEHHHHHh-hhhhcccCCCCHHHHHHHHhcCCCCceEeec--cEEEec
Confidence 3578999999999998 3333 234477888888887665 55554 367654
No 231
>4ec6_A Putative uncharacterized protein; GRAM-positive, conjugation, NTF2-like, unknown function; 2.50A {Enterococcus faecalis}
Probab=62.78 E-value=1 Score=39.83 Aligned_cols=8 Identities=50% Similarity=1.024 Sum_probs=4.8
Q ss_pred ccccccCC
Q 015515 205 VEYYFSDL 212 (405)
Q Consensus 205 vEfYFSD~ 212 (405)
|.+|||+.
T Consensus 65 Ls~YfS~~ 72 (161)
T 4ec6_A 65 LTYYFSQE 72 (161)
T ss_dssp HHHHTCCC
T ss_pred hHHHhCCC
Confidence 44677763
No 232
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=58.48 E-value=2 Score=42.80 Aligned_cols=11 Identities=0% Similarity=0.066 Sum_probs=4.5
Q ss_pred HHHHHHhhccc
Q 015515 196 ESIQKVLNQVE 206 (405)
Q Consensus 196 e~~~kI~kQvE 206 (405)
+.+++.++.||
T Consensus 61 ~~~~~~~~~L~ 71 (371)
T 3tla_A 61 NRFFRGVEFLQ 71 (371)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444443433
No 233
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=56.42 E-value=2.3 Score=41.11 Aligned_cols=9 Identities=0% Similarity=0.084 Sum_probs=3.9
Q ss_pred HHHHHhhcC
Q 015515 305 LMKIFSAVG 313 (405)
Q Consensus 305 L~~~Fs~fG 313 (405)
++++.+.+|
T Consensus 236 v~~~a~~~~ 244 (314)
T 3fwy_A 236 VDRFCKETN 244 (314)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 344444444
No 234
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=53.78 E-value=2.7 Score=38.69 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=6.0
Q ss_pred CCChHHHHHHhhc
Q 015515 192 GLNDESIQKVLNQ 204 (405)
Q Consensus 192 ~~~~e~~~kI~kQ 204 (405)
++..|+.+.|.++
T Consensus 79 G~~~dl~~~i~~~ 91 (291)
T 2yjp_A 79 GFDVEIAKDLAKD 91 (291)
T ss_dssp SHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHH
Confidence 4444555444433
No 235
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=53.13 E-value=19 Score=34.64 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=23.6
Q ss_pred ceeEEeeCCCc----cccHHHHHHHHhhcCCeeEEEE
Q 015515 288 SRIVVAENLPE----DHCHQNLMKIFSAVGSVKTIRT 320 (405)
Q Consensus 288 ~rtVyV~nLP~----d~t~e~L~~~Fs~fG~V~~Vri 320 (405)
..-|++-|+|. +.+.+.|.++..++..|.-|.-
T Consensus 150 ~lPiilYn~P~~tg~~l~~~~~~~L~a~~pnIvgiKd 186 (315)
T 3na8_A 150 GVPVMLYNNPGTSGIDMSVELILRIVREVDNVTMVKE 186 (315)
T ss_dssp SSCEEEEECHHHHSCCCCHHHHHHHHHHSTTEEEEEE
T ss_pred CCcEEEEeCcchhCcCCCHHHHHHHHhcCCCEEEEEC
Confidence 34677888874 5567788887677888777764
No 236
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=52.91 E-value=2.9 Score=40.17 Aligned_cols=8 Identities=63% Similarity=0.754 Sum_probs=3.2
Q ss_pred HHHHHHcC
Q 015515 362 KAIAELND 369 (405)
Q Consensus 362 kAv~~ln~ 369 (405)
+|+..||+
T Consensus 309 kaL~~lN~ 316 (379)
T 3uau_A 309 KALAILNN 316 (379)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 33444443
No 237
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=47.51 E-value=6.8 Score=31.12 Aligned_cols=21 Identities=10% Similarity=0.147 Sum_probs=18.5
Q ss_pred eCCCccccHHHHHHHHhhcCC
Q 015515 294 ENLPEDHCHQNLMKIFSAVGS 314 (405)
Q Consensus 294 ~nLP~d~t~e~L~~~Fs~fG~ 314 (405)
+++..+.++++|+++|++||-
T Consensus 89 ~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 89 QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhHhHHHHHHHHHHhCC
Confidence 677788899999999999985
No 238
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=47.25 E-value=66 Score=22.84 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=42.3
Q ss_pred cceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCHHHHHHHHHH
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~E~A~kAv~~ 366 (405)
...++.|.|+.=..+...|++.+.+ .-|..+.+-.. .+.+.|+|.+.++..++++.
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----------------------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----------------------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----------------------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 3457889999888889999999999 88988888321 45678898855566666654
No 239
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=46.03 E-value=6.3 Score=37.55 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=17.2
Q ss_pred cCCCCCChHHHHHHhhccccc
Q 015515 188 HQHGGLNDESIQKVLNQVEYY 208 (405)
Q Consensus 188 ~~~~~~~~e~~~kI~kQvEfY 208 (405)
..-..++..++..+++-||-|
T Consensus 31 ~~h~plspr~l~~~~k~ve~~ 51 (262)
T 1d1d_A 31 PAWTPLEPKLITRLADTVRTK 51 (262)
T ss_dssp --CCCCCHHHHHHHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHc
Confidence 478899999999999999776
No 240
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=43.11 E-value=5.1 Score=39.94 Aligned_cols=7 Identities=29% Similarity=0.420 Sum_probs=2.7
Q ss_pred eEEeeCC
Q 015515 290 IVVAENL 296 (405)
Q Consensus 290 tVyV~nL 296 (405)
.||++..
T Consensus 266 ILfLEdv 272 (371)
T 3tla_A 266 ILFIEDS 272 (371)
T ss_dssp EEEEECB
T ss_pred EEEEEeC
Confidence 3333333
No 241
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=42.94 E-value=5.1 Score=39.43 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=4.5
Q ss_pred Hhhccccccc
Q 015515 201 VLNQVEYYFS 210 (405)
Q Consensus 201 I~kQvEfYFS 210 (405)
++.=.+||+|
T Consensus 85 lR~~FDYfLs 94 (332)
T 2es4_D 85 VREFFDYCLT 94 (332)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 3333445555
No 242
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=41.89 E-value=11 Score=37.88 Aligned_cols=16 Identities=13% Similarity=0.422 Sum_probs=9.8
Q ss_pred CCCCCChHHHHHHhhc
Q 015515 189 QHGGLNDESIQKVLNQ 204 (405)
Q Consensus 189 ~~~~~~~e~~~kI~kQ 204 (405)
.+-.++.+...+|.++
T Consensus 38 ~RValtP~~V~~L~~~ 53 (394)
T 2qrj_A 38 ARAALTPTTVKKLIAK 53 (394)
T ss_dssp CCCSSCHHHHHHHHHT
T ss_pred ceeccCHHHHHHHHhC
Confidence 4555677776666544
No 243
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=40.42 E-value=5.9 Score=38.04 Aligned_cols=7 Identities=0% Similarity=0.662 Sum_probs=2.9
Q ss_pred CCChHHH
Q 015515 192 GLNDESI 198 (405)
Q Consensus 192 ~~~~e~~ 198 (405)
.++++++
T Consensus 28 ~ld~~tV 34 (379)
T 3uau_A 28 SIDEKTV 34 (379)
T ss_dssp CSCHHHH
T ss_pred cccHHHH
Confidence 3444443
No 244
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=40.42 E-value=5.9 Score=36.29 Aligned_cols=12 Identities=25% Similarity=0.338 Sum_probs=5.2
Q ss_pred CCChHHHHHHhh
Q 015515 192 GLNDESIQKVLN 203 (405)
Q Consensus 192 ~~~~e~~~kI~k 203 (405)
++..|+.+.|.+
T Consensus 81 G~~~dl~~~i~~ 92 (283)
T 2yln_A 81 GYDVEVTRAVAE 92 (283)
T ss_dssp SHHHHHHHHHHH
T ss_pred eehHHHHHHHHH
Confidence 344444444443
No 245
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=38.29 E-value=6.7 Score=39.53 Aligned_cols=7 Identities=14% Similarity=0.534 Sum_probs=0.0
Q ss_pred ccCCCcc
Q 015515 132 HQQHQQH 138 (405)
Q Consensus 132 ~~~h~~h 138 (405)
.++-|||
T Consensus 495 RR~~~~~ 501 (510)
T 4grv_A 495 RRKAHHH 501 (510)
T ss_dssp -------
T ss_pred CCccccc
Confidence 3333333
No 246
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=37.86 E-value=6.8 Score=38.00 Aligned_cols=10 Identities=10% Similarity=0.059 Sum_probs=4.1
Q ss_pred HHHHHHhhcC
Q 015515 304 NLMKIFSAVG 313 (405)
Q Consensus 304 ~L~~~Fs~fG 313 (405)
.|+++=+.||
T Consensus 218 aikeygkdyg 227 (564)
T 4faj_A 218 AIKEYGKDYG 227 (564)
T ss_dssp HHHHHGGGTT
T ss_pred HHHHhccccC
Confidence 3444433444
No 247
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=37.72 E-value=7.5 Score=38.00 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=13.7
Q ss_pred ceeEEeeCC-CccccHHHHHHHHhhcC
Q 015515 288 SRIVVAENL-PEDHCHQNLMKIFSAVG 313 (405)
Q Consensus 288 ~rtVyV~nL-P~d~t~e~L~~~Fs~fG 313 (405)
...||+.-= .-..+.+.+.+++..-|
T Consensus 173 nv~vYlDaGh~gWl~a~~~a~~l~~AG 199 (315)
T 1uoz_A 173 AAAVYVDAGHSRWLSAEAMAARLNDVG 199 (315)
T ss_dssp TEEEEEECCCTTSSCHHHHHHHHHHTT
T ss_pred CeEEEEeCCCccccCHHHHHHHHHhcC
Confidence 345676411 12234566666666666
No 248
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=37.65 E-value=6.9 Score=35.48 Aligned_cols=13 Identities=15% Similarity=0.199 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHHc
Q 015515 356 SVELAEKAIAELN 368 (405)
Q Consensus 356 s~E~A~kAv~~ln 368 (405)
+.++..++|+.|.
T Consensus 171 ~~~ell~~l~~L~ 183 (221)
T 2c0d_A 171 NVQEVLRTIDSII 183 (221)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 4677777777664
No 249
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=36.45 E-value=7.4 Score=41.06 Aligned_cols=15 Identities=27% Similarity=0.778 Sum_probs=4.6
Q ss_pred ccCCCCCC--CCCCCCC
Q 015515 39 RLNAKAPE--FVPTRNP 53 (405)
Q Consensus 39 ~~~~~ap~--~~p~~~~ 53 (405)
|+||--|. |.|..+.
T Consensus 448 Ri~aedp~~~f~p~~G~ 464 (587)
T 3jrx_A 448 RITSENPDEGFKPSSGT 464 (587)
T ss_dssp EEEC----------CCC
T ss_pred eecccCccccCCCCCcE
Confidence 78887773 7765543
No 250
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=35.57 E-value=68 Score=25.11 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=18.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHc
Q 015515 347 KLHAFVEYESVELAEKAIAELN 368 (405)
Q Consensus 347 KG~aFVEFes~E~A~kAv~~ln 368 (405)
+||.||+++..++...+++.+.
T Consensus 50 PGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 50 KGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp TTEEEEEESSHHHHHHHHTTCT
T ss_pred CCEEEEEEecchhHHHHHHCCC
Confidence 8999999999988877776543
No 251
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=35.27 E-value=6.6 Score=37.68 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=15.7
Q ss_pred eEEeeCCCccccHHHHHHHHh
Q 015515 290 IVVAENLPEDHCHQNLMKIFS 310 (405)
Q Consensus 290 tVyV~nLP~d~t~e~L~~~Fs 310 (405)
.++|.|+|+..+..-|.++++
T Consensus 116 D~Iv~NlPy~is~pil~~lL~ 136 (295)
T 3gru_A 116 NKVVANLPYQISSPITFKLIK 136 (295)
T ss_dssp SEEEEECCGGGHHHHHHHHHH
T ss_pred cEEEEeCcccccHHHHHHHHh
Confidence 467799999888776666655
No 252
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=34.67 E-value=8.2 Score=37.86 Aligned_cols=14 Identities=43% Similarity=0.968 Sum_probs=0.0
Q ss_pred CCccccCCCCCCCC
Q 015515 135 HQQHQHHRNHNHHH 148 (405)
Q Consensus 135 h~~h~~~~~~~~~~ 148 (405)
|||||||++|.+-|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (332)
T 4axs_A 3 HHHHHHHHHHSSGH 16 (332)
T ss_dssp --------------
T ss_pred cccccccccccccc
No 253
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=34.64 E-value=8.3 Score=40.43 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=8.4
Q ss_pred CceEEEEcccCC
Q 015515 375 SGLRVRLMLRRG 386 (405)
Q Consensus 375 ~glkV~ll~~~~ 386 (405)
.||+++++-.++
T Consensus 253 ~gI~l~lFHGRG 264 (560)
T 3odm_A 253 HGVTISPILGCG 264 (560)
T ss_dssp HTCEEEEEEECC
T ss_pred cCCcEEEEeeCC
Confidence 478888886443
No 254
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 2ol2_A*
Probab=32.65 E-value=9.3 Score=38.00 Aligned_cols=13 Identities=8% Similarity=0.222 Sum_probs=6.2
Q ss_pred hHHHHHHhhcccc
Q 015515 195 DESIQKVLNQVEY 207 (405)
Q Consensus 195 ~e~~~kI~kQvEf 207 (405)
.++++.|.+-|.|
T Consensus 74 g~T~~el~~~L~~ 86 (395)
T 3b9f_I 74 SSTKMQILEGLGL 86 (395)
T ss_dssp HHHHHHHHHHTTC
T ss_pred cHHHHHHHHHhCC
Confidence 4444555554433
No 255
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=31.98 E-value=9.7 Score=38.31 Aligned_cols=21 Identities=5% Similarity=0.030 Sum_probs=13.4
Q ss_pred cccccCCCCCChHHHHHHhhcc
Q 015515 184 EKKDHQHGGLNDESIQKVLNQV 205 (405)
Q Consensus 184 ~~~~~~~~~~~~e~~~kI~kQv 205 (405)
.+... ..+++|+..++...+|
T Consensus 59 VE~gA-~a~f~D~~Y~~AGA~I 79 (394)
T 2qrj_A 59 VEDSP-QSTFNINEYRQAGAII 79 (394)
T ss_dssp EECCS-SCSSCHHHHHHTTCEE
T ss_pred EeCCC-CCCCCHHHHHhCCcEE
Confidence 34444 6777888877766555
No 256
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=31.94 E-value=22 Score=33.92 Aligned_cols=24 Identities=4% Similarity=0.056 Sum_probs=15.3
Q ss_pred cceeEEeeCCCccccHHHHHHHHh
Q 015515 287 QSRIVVAENLPEDHCHQNLMKIFS 310 (405)
Q Consensus 287 ~~rtVyV~nLP~d~t~e~L~~~Fs 310 (405)
..++|.|..=--.+|.++|...|.
T Consensus 128 ~~~tLtI~DNGiGMTkeeL~~~Lg 151 (272)
T 3ied_A 128 EKKTLTITDNGIGMDKSELINNLG 151 (272)
T ss_dssp TTTEEEEEECSCCCCHHHHHHHTT
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHH
Confidence 346777765555677777776553
No 257
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=31.67 E-value=9.9 Score=37.36 Aligned_cols=10 Identities=10% Similarity=-0.137 Sum_probs=4.0
Q ss_pred HHhhcccccc
Q 015515 200 KVLNQVEYYF 209 (405)
Q Consensus 200 kI~kQvEfYF 209 (405)
.|+.+|+-|.
T Consensus 103 ~i~~~v~~~i 112 (332)
T 2es4_D 103 ALDALVRREI 112 (332)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 258
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=31.51 E-value=10 Score=36.07 Aligned_cols=16 Identities=6% Similarity=0.183 Sum_probs=10.8
Q ss_pred CCHHHHHHHHHHHcCC
Q 015515 355 ESVELAEKAIAELNDE 370 (405)
Q Consensus 355 es~E~A~kAv~~ln~~ 370 (405)
.+.+++.++++.|...
T Consensus 249 ~~~~~~~~~~~~l~~~ 264 (299)
T 3cio_A 249 NTAKEVSLSMQRLEQA 264 (299)
T ss_dssp SCTTHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhC
Confidence 3466777888777654
No 259
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=31.01 E-value=10 Score=39.08 Aligned_cols=9 Identities=22% Similarity=0.361 Sum_probs=3.5
Q ss_pred ceecccccc
Q 015515 231 YVPISTVAS 239 (405)
Q Consensus 231 ~Vpi~~i~s 239 (405)
||+++....
T Consensus 138 ~vpl~~~~~ 146 (580)
T 3etc_A 138 AVPATHMLK 146 (580)
T ss_dssp EEECCTTCC
T ss_pred EEeCCccCC
Confidence 344443333
No 260
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=31.00 E-value=10 Score=33.50 Aligned_cols=8 Identities=13% Similarity=0.185 Sum_probs=3.4
Q ss_pred CCeeEEEE
Q 015515 313 GSVKTIRT 320 (405)
Q Consensus 313 G~V~~Vri 320 (405)
|+.-.++|
T Consensus 131 g~w~~l~I 138 (185)
T 4b1m_A 131 NKKYHLKT 138 (185)
T ss_dssp SCCEEEEE
T ss_pred CCeEEEEE
Confidence 44444444
No 261
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=30.84 E-value=10 Score=35.44 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=22.9
Q ss_pred EEEEEeCCHHHHHHHHHHHcC-CCCCCCceEEEEccc
Q 015515 349 HAFVEYESVELAEKAIAELND-EGNWRSGLRVRLMLR 384 (405)
Q Consensus 349 ~aFVEFes~E~A~kAv~~ln~-~~~~~~glkV~ll~~ 384 (405)
+-.|.|.+.+.++..++.+.. ...|-.++++..+..
T Consensus 211 ~d~v~ftS~~~v~~f~~~~~~~~~~~l~~~~i~aIG~ 247 (286)
T 1jr2_A 211 PASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGP 247 (286)
T ss_dssp CSEEEESSHHHHHHHHHHHHHHHGGGGGGSEEEESSH
T ss_pred CCEEEEEChHHHHHHHHHHhhhccccccCCEEEEECH
Confidence 468999999999888776643 112233456555443
No 262
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=30.68 E-value=11 Score=36.72 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=8.7
Q ss_pred CHHHHHHHHHHHcC
Q 015515 356 SVELAEKAIAELND 369 (405)
Q Consensus 356 s~E~A~kAv~~ln~ 369 (405)
..+...+|+..+..
T Consensus 208 ~~~~ll~A~~~l~~ 221 (374)
T 2xci_A 208 EVEIILKAFKEIKK 221 (374)
T ss_dssp GHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHh
Confidence 35666677776653
No 263
>3pnr_B Pbicp-C; immunoglobulin fold, hydrolase-hydrolase inhibitor complex; 2.60A {Plasmodium berghei}
Probab=29.69 E-value=11 Score=33.12 Aligned_cols=8 Identities=13% Similarity=0.347 Sum_probs=4.0
Q ss_pred cEEEEEeC
Q 015515 348 LHAFVEYE 355 (405)
Q Consensus 348 G~aFVEFe 355 (405)
|--||.|.
T Consensus 159 GkyyiVYS 166 (187)
T 3pnr_B 159 GKYYIVYS 166 (187)
T ss_dssp EEEEEEEE
T ss_pred ccEEEEEE
Confidence 34466553
No 264
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=29.66 E-value=11 Score=32.51 Aligned_cols=14 Identities=14% Similarity=0.128 Sum_probs=7.1
Q ss_pred CCChHHHHHHhhcc
Q 015515 192 GLNDESIQKVLNQV 205 (405)
Q Consensus 192 ~~~~e~~~kI~kQv 205 (405)
.+|+...++|++.+
T Consensus 42 tiTe~Aa~~lk~ll 55 (145)
T 2d2a_A 42 TLTPAAAIHIRELV 55 (145)
T ss_dssp EECHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHH
Confidence 34555555555444
No 265
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=29.52 E-value=11 Score=36.92 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=8.4
Q ss_pred CCCChHHHHHHhhc
Q 015515 191 GGLNDESIQKVLNQ 204 (405)
Q Consensus 191 ~~~~~e~~~kI~kQ 204 (405)
.-.+-+++.+|++.
T Consensus 35 G~TS~dvv~~vr~~ 48 (327)
T 1k8w_A 35 GMSSNDALQKVKRI 48 (327)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 33446677777764
No 266
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=29.37 E-value=1.3e+02 Score=26.68 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=34.2
Q ss_pred eeEEeeCCCcc---------ccHHHHHHHH--hhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeCCH
Q 015515 289 RIVVAENLPED---------HCHQNLMKIF--SAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (405)
Q Consensus 289 rtVyV~nLP~d---------~t~e~L~~~F--s~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFes~ 357 (405)
-+++|.|++.+ .+.++|++.| +.|..++..-+ ... .++.|+|.|+|.+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l-~~~-------------------~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPL-WNY-------------------LGHSGTAIVEFNKD 72 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEE-ECS-------------------SBEEEEEEEECCSS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEec-ccC-------------------CCCceeEEEEecCC
Confidence 47888888862 3457899977 99988764433 321 02478999999984
No 267
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=29.35 E-value=31 Score=20.91 Aligned_cols=16 Identities=50% Similarity=0.571 Sum_probs=13.4
Q ss_pred CccccCCCCCCCCCCC
Q 015515 36 SFSRLNAKAPEFVPTR 51 (405)
Q Consensus 36 ~~~~~~~~ap~~~p~~ 51 (405)
+-|.||..|=||+|+.
T Consensus 2 ~ks~lnp~akef~pgv 17 (26)
T 1jgn_B 2 VKSNLNPNAKEFVPGV 17 (26)
T ss_dssp CCCSSCTTCCCCCTTS
T ss_pred ccccCCcchhhcCCCc
Confidence 4578999999999874
No 268
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=29.12 E-value=1.4e+02 Score=20.40 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=28.2
Q ss_pred eeEEeeCCCccccHHHHHHHHhhcCCeeEEEEe
Q 015515 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (405)
Q Consensus 289 rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~ 321 (405)
.++.|.|+.-..+...+++.+.+..-|..+.+-
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~ 36 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVN 36 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEE
Confidence 467889998888889999999998888888884
No 269
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=28.24 E-value=12 Score=34.51 Aligned_cols=14 Identities=14% Similarity=-0.021 Sum_probs=7.4
Q ss_pred eCCHHHHHHHHHHH
Q 015515 354 YESVELAEKAIAEL 367 (405)
Q Consensus 354 Fes~E~A~kAv~~l 367 (405)
|-+.+++-+++..+
T Consensus 251 ~~~~~dvA~~~~~l 264 (285)
T 2c07_A 251 MGTPEEVANLACFL 264 (285)
T ss_dssp CBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 44666655555443
No 270
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=28.19 E-value=12 Score=36.23 Aligned_cols=6 Identities=33% Similarity=0.839 Sum_probs=3.2
Q ss_pred EEEeCC
Q 015515 351 FVEYES 356 (405)
Q Consensus 351 FVEFes 356 (405)
+|||..
T Consensus 386 lvefnk 391 (564)
T 4faj_A 386 LVEFNK 391 (564)
T ss_dssp CCCCCH
T ss_pred HHHhhH
Confidence 556543
No 271
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=27.84 E-value=13 Score=37.03 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=38.0
Q ss_pred CCCccccHHHHHH----HHhhcCCeeEEEEecCCCCCCC--------CCC-CCCc--ccccCcccCCccEEEEEeCCHHH
Q 015515 295 NLPEDHCHQNLMK----IFSAVGSVKTIRTCLPQTSGGG--------ASS-GSRS--AKSEGMLFSNKLHAFVEYESVEL 359 (405)
Q Consensus 295 nLP~d~t~e~L~~----~Fs~fG~V~~Vri~~pk~s~~~--------~p~-~~R~--~k~~g~~~~~KG~aFVEFes~E~ 359 (405)
|.+.+.+.|.|+. ++++||--..+++.+-....++ .|. ..+. ....|+...-+|.+|+.=-+..-
T Consensus 145 n~~~~psvDy~~~v~lP~l~~fG~~~~l~i~rRG~~P~GGGeV~~~v~pv~~l~~i~l~~~G~i~rIrG~a~~~~v~~~v 224 (358)
T 3tut_A 145 DNPSAPPADFIRRVLEPLLAKIGIHQQTTLLRHGFYPAGGGVVATEVSPVASFNTLQLGERGNIVQMRGEVLLAGVPRHV 224 (358)
T ss_dssp CCTTSCCHHHHHHTHHHHHHHHTCCEEEEEEECCCTTTCCEEEEEEECCCSCCCCCBCCBCCCEEEEEEEEEEESSCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCcEEEEEEeccccCCCCeEEEEEEecCCCcccceeecCCCceEEEEEEEEcCCChHH
Confidence 4456667776654 3567886556665543321111 010 0110 00112221226788888777777
Q ss_pred HHHHHHHHcC
Q 015515 360 AEKAIAELND 369 (405)
Q Consensus 360 A~kAv~~ln~ 369 (405)
|++.++...+
T Consensus 225 a~R~~~~ar~ 234 (358)
T 3tut_A 225 AEREIATLAG 234 (358)
T ss_dssp HHHHHHHHBT
T ss_pred HHHHHHHHHh
Confidence 7777776654
No 272
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=27.51 E-value=13 Score=31.71 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=9.9
Q ss_pred ceeEEeeCCCcccc
Q 015515 288 SRIVVAENLPEDHC 301 (405)
Q Consensus 288 ~rtVyV~nLP~d~t 301 (405)
...|||...|..+.
T Consensus 88 ~k~vFI~w~Pd~a~ 101 (139)
T 2l72_A 88 NKIQFVLWCPDNAP 101 (139)
T ss_dssp SCEEEEEECCTTSC
T ss_pred CcEEEEEECCCCCC
Confidence 46788888887653
No 273
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*
Probab=27.51 E-value=13 Score=39.24 Aligned_cols=15 Identities=0% Similarity=-0.079 Sum_probs=6.3
Q ss_pred EEEEEeCCHHHHHHH
Q 015515 349 HAFVEYESVELAEKA 363 (405)
Q Consensus 349 ~aFVEFes~E~A~kA 363 (405)
..++.|-+.|++...
T Consensus 303 ~~l~~~v~~e~v~~~ 317 (591)
T 3b0g_A 303 IPLDAWVPADDVVPV 317 (591)
T ss_dssp EEEEEEEEGGGHHHH
T ss_pred eeeccccCHHHHHHH
Confidence 334444444444443
No 274
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=27.46 E-value=13 Score=40.32 Aligned_cols=10 Identities=50% Similarity=1.198 Sum_probs=0.0
Q ss_pred CccCCCcccc
Q 015515 131 HHQQHQQHQH 140 (405)
Q Consensus 131 ~~~~h~~h~~ 140 (405)
|||+||||||
T Consensus 715 ~~~~~~~~~~ 724 (724)
T 3rce_A 715 HHHHHHHHHH 724 (724)
T ss_dssp ----------
T ss_pred hcccccccCC
No 275
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=27.42 E-value=13 Score=36.91 Aligned_cols=12 Identities=17% Similarity=0.019 Sum_probs=6.4
Q ss_pred ChHHHHHHhhcc
Q 015515 194 NDESIQKVLNQV 205 (405)
Q Consensus 194 ~~e~~~kI~kQv 205 (405)
+-|++.+|++.+
T Consensus 79 S~~vv~~vr~~l 90 (357)
T 2apo_A 79 SHEVSTWVKKIL 90 (357)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 455556665543
No 276
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=27.40 E-value=13 Score=33.29 Aligned_cols=9 Identities=0% Similarity=0.305 Sum_probs=4.9
Q ss_pred HHHHHHHhh
Q 015515 303 QNLMKIFSA 311 (405)
Q Consensus 303 e~L~~~Fs~ 311 (405)
.+|+++.++
T Consensus 138 ~EIRDlLk~ 146 (174)
T 2oar_A 138 TEIRDLLAQ 146 (174)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 455565554
No 277
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=27.13 E-value=15 Score=35.97 Aligned_cols=21 Identities=0% Similarity=-0.107 Sum_probs=10.9
Q ss_pred HHHHHHHhhcCCeeEEEEecC
Q 015515 303 QNLMKIFSAVGSVKTIRTCLP 323 (405)
Q Consensus 303 e~L~~~Fs~fG~V~~Vri~~p 323 (405)
+.|.-..++++.+-.|.+..|
T Consensus 159 ~~l~yAv~~L~~~pnv~vYlD 179 (315)
T 1uoz_A 159 DLVRYAVDTLTRDPAAAVYVD 179 (315)
T ss_dssp HHHHHHHHHHTTSTTEEEEEE
T ss_pred HHHHHHHHHhccCCCeEEEEe
Confidence 344444555555555555555
No 278
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=26.62 E-value=1.6e+02 Score=20.39 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=42.5
Q ss_pred ceeEEeeCCCccccHHHHHHHHhhcCCeeEEEEecCCCCCCCCCCCCCcccccCcccCCccEEEEEeC----CHHHHHHH
Q 015515 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE----SVELAEKA 363 (405)
Q Consensus 288 ~rtVyV~nLP~d~t~e~L~~~Fs~fG~V~~Vri~~pk~s~~~~p~~~R~~k~~g~~~~~KG~aFVEFe----s~E~A~kA 363 (405)
..++.|.|+.-..+...|++.+.+..-|..+.+-.. .+.+.|+|+ +.++..++
T Consensus 3 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----------------------~~~~~v~~~~~~~~~~~i~~~ 59 (74)
T 3dxs_X 3 KIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL-----------------------QNRADVVFDPNLVKEEDIKEE 59 (74)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG-----------------------GTEEEEEECTTTCCHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec-----------------------CCEEEEEECCCCCCHHHHHHH
Confidence 347888999888888999999999888888887422 346789985 45666666
Q ss_pred HHHH
Q 015515 364 IAEL 367 (405)
Q Consensus 364 v~~l 367 (405)
++.+
T Consensus 60 i~~~ 63 (74)
T 3dxs_X 60 IEDA 63 (74)
T ss_dssp HHHH
T ss_pred HHHC
Confidence 6654
No 279
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans}
Probab=26.43 E-value=14 Score=37.24 Aligned_cols=20 Identities=15% Similarity=0.012 Sum_probs=9.1
Q ss_pred eCCCccccH---HHHHHHHhhcC
Q 015515 294 ENLPEDHCH---QNLMKIFSAVG 313 (405)
Q Consensus 294 ~nLP~d~t~---e~L~~~Fs~fG 313 (405)
.++..-++. ++|.+.|..+|
T Consensus 252 iG~s~RTn~~gie~La~~L~~~~ 274 (433)
T 4e4j_A 252 IGNSERTNFAAIESVAKNIQANK 274 (433)
T ss_dssp EEESSSCCHHHHHHHHHHHHTCS
T ss_pred EEecccChHHHHHHHHHHHhhcC
Confidence 333444444 34544444444
No 280
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=26.31 E-value=14 Score=33.39 Aligned_cols=10 Identities=0% Similarity=0.016 Sum_probs=4.4
Q ss_pred HHHHHHHHhh
Q 015515 302 HQNLMKIFSA 311 (405)
Q Consensus 302 ~e~L~~~Fs~ 311 (405)
.+.|.+.|..
T Consensus 124 i~~l~~~~~~ 133 (236)
T 2px7_A 124 VARVLEAAQR 133 (236)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3444444443
No 281
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=26.00 E-value=14 Score=38.08 Aligned_cols=8 Identities=0% Similarity=-0.114 Sum_probs=3.7
Q ss_pred CCCHHHHh
Q 015515 215 ATTDHLIR 222 (405)
Q Consensus 215 ~~D~fL~~ 222 (405)
-||..+++
T Consensus 98 DR~~~~F~ 105 (514)
T 2r9r_B 98 DRNRPSFD 105 (514)
T ss_dssp CSCHHHHH
T ss_pred cCChHHHH
Confidence 35644444
No 282
>2h2m_A Protein MURR1, COMM domain-containing protein 1; all alpha-helical, metal transport; NMR {Homo sapiens}
Probab=25.99 E-value=21 Score=29.51 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=25.9
Q ss_pred hcccccccCCCCCCCHHHHhhhcCCCCCceecccccch-hhhHhh
Q 015515 203 NQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASF-KKIKAI 246 (405)
Q Consensus 203 kQvEfYFSD~NL~~D~fL~~~i~k~~eG~Vpi~~i~sF-kRmk~L 246 (405)
.|.+|| .|..+ .|++|++.+.-+ |+.+.+..+ +||+.+
T Consensus 20 aq~~y~-~~~~I-tee~L~~~lypd----vt~eef~~~~~K~~~l 58 (108)
T 2h2m_A 20 AQDTFH-GYPGI-TEELLRSQLYPE----VPPEEFRPFLAKMRGI 58 (108)
T ss_dssp CCCSSS-CCSSC-CHHHHHHHHCSS----SCSSTHHHHHTTTSTT
T ss_pred HHHHHc-CCccc-cHHHHHHHHcCC----CCHHHHHHHHHHHHHH
Confidence 477776 88777 899999998654 666665544 444443
No 283
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=25.25 E-value=15 Score=34.26 Aligned_cols=12 Identities=50% Similarity=1.021 Sum_probs=0.0
Q ss_pred CCCCccCCCccccC
Q 015515 128 QNYHHQQHQQHQHH 141 (405)
Q Consensus 128 ~~~~~~~h~~h~~~ 141 (405)
+.||| |||||||
T Consensus 1 ~~~~~--~~~~~~~ 12 (288)
T 1jxh_A 1 MGHHH--HHHHHHH 12 (288)
T ss_dssp --------------
T ss_pred CCccc--ccccccc
No 284
>1qwz_A NPQTN specific sortase B; beta barrel, transpeptidase, hydrolase; 1.75A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1qxa_A 1ng5_A 1qx6_A*
Probab=24.41 E-value=23 Score=32.88 Aligned_cols=10 Identities=50% Similarity=1.198 Sum_probs=0.0
Q ss_pred CccCCCcccc
Q 015515 131 HHQQHQQHQH 140 (405)
Q Consensus 131 ~~~~h~~h~~ 140 (405)
|||+||||||
T Consensus 2 ~~~~~~~~~~ 11 (235)
T 1qwz_A 2 HHHHHHHHHH 11 (235)
T ss_dssp CCSSSSCCCC
T ss_pred Cccccccccc
No 285
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=24.40 E-value=16 Score=36.87 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=10.3
Q ss_pred cHHHHHHH---HhhcCCeeEEEE
Q 015515 301 CHQNLMKI---FSAVGSVKTIRT 320 (405)
Q Consensus 301 t~e~L~~~---Fs~fG~V~~Vri 320 (405)
+.++|+++ -.++|-+.-+.-
T Consensus 255 s~~~l~~i~~la~~~~~~li~De 277 (500)
T 3tcm_A 255 AEENQYDIVKFCKNEGLVLLADE 277 (500)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 34444444 566665555543
No 286
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=24.39 E-value=16 Score=38.30 Aligned_cols=12 Identities=17% Similarity=-0.083 Sum_probs=5.3
Q ss_pred EeCCHHHHHHHH
Q 015515 353 EYESVELAEKAI 364 (405)
Q Consensus 353 EFes~E~A~kAv 364 (405)
=|||.++-.+|-
T Consensus 186 LFETieDL~~a~ 197 (560)
T 3odm_A 186 LVEDVPALANID 197 (560)
T ss_dssp EECCHHHHHTTH
T ss_pred CcCCHHHHHhhH
Confidence 344444444433
No 287
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1
Probab=24.27 E-value=16 Score=35.94 Aligned_cols=10 Identities=50% Similarity=1.198 Sum_probs=0.0
Q ss_pred CccCCCcccc
Q 015515 131 HHQQHQQHQH 140 (405)
Q Consensus 131 ~~~~h~~h~~ 140 (405)
|||+||||||
T Consensus 2 ~~~~~~~~~~ 11 (386)
T 1wue_A 2 HHHHHHHHHH 11 (386)
T ss_dssp ----------
T ss_pred CCcccccccc
No 288
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=24.19 E-value=16 Score=34.59 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=4.1
Q ss_pred ccceeecc
Q 015515 261 SKLVVSED 268 (405)
Q Consensus 261 ~~LeVsed 268 (405)
.+|.|+-|
T Consensus 135 rVLLID~D 142 (299)
T 3cio_A 135 KVLFIDAD 142 (299)
T ss_dssp CEEEEECC
T ss_pred cEEEEECC
Confidence 34555544
No 289
>4fl4_A Glycoside hydrolase family 9; structural genomics, montreal-kingston bacterial structural initiative, BSGI, dockerin; 2.80A {Clostridium thermocellum} PDB: 3p0d_A
Probab=24.00 E-value=16 Score=29.01 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=5.2
Q ss_pred CCCCCceecc
Q 015515 226 KDPEGYVPIS 235 (405)
Q Consensus 226 k~~eG~Vpi~ 235 (405)
.+.||-|...
T Consensus 61 vNgDG~In~~ 70 (88)
T 4fl4_A 61 VNRDGRVNSS 70 (88)
T ss_dssp TTCSSCCSHH
T ss_pred ccCCCCcCHH
Confidence 4566655433
No 290
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1
Probab=23.79 E-value=17 Score=35.97 Aligned_cols=10 Identities=50% Similarity=1.198 Sum_probs=0.0
Q ss_pred CccCCCcccc
Q 015515 131 HHQQHQQHQH 140 (405)
Q Consensus 131 ~~~~h~~h~~ 140 (405)
|||+||||||
T Consensus 2 ~~~~~~~~~~ 11 (393)
T 1wuf_A 2 HHHHHHHHHH 11 (393)
T ss_dssp ----------
T ss_pred CCcccccccc
No 291
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=23.72 E-value=17 Score=31.61 Aligned_cols=15 Identities=7% Similarity=0.388 Sum_probs=8.6
Q ss_pred CCChHHHHHHhhccc
Q 015515 192 GLNDESIQKVLNQVE 206 (405)
Q Consensus 192 ~~~~e~~~kI~kQvE 206 (405)
+++++.+-.+..-+|
T Consensus 32 g~~e~elL~lAAs~E 46 (156)
T 1svj_A 32 GVDEKTLADAAQLAS 46 (156)
T ss_dssp TSCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHh
Confidence 455555555666666
No 292
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=23.29 E-value=19 Score=36.34 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=16.2
Q ss_pred cccHHHHHHHHhhc---C-CeeEEEEecCCC
Q 015515 299 DHCHQNLMKIFSAV---G-SVKTIRTCLPQT 325 (405)
Q Consensus 299 d~t~e~L~~~Fs~f---G-~V~~Vri~~pk~ 325 (405)
..+.++|++.+... | .++.|-++.+.+
T Consensus 218 ~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~N 248 (500)
T 3tcm_A 218 GLETSDVKKQLEDARSRGINVRALVVINPGN 248 (500)
T ss_dssp BCCHHHHHHHHHHHHHTTCEEEEEEEESSCT
T ss_pred CCCHHHHHHHHHHHHhcCCCceEEEEECCCC
Confidence 45677777777653 2 455566665544
No 293
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 2ol2_A*
Probab=23.29 E-value=17 Score=36.04 Aligned_cols=9 Identities=11% Similarity=0.109 Sum_probs=4.0
Q ss_pred CCeeEEEEe
Q 015515 313 GSVKTIRTC 321 (405)
Q Consensus 313 G~V~~Vri~ 321 (405)
|....|.|+
T Consensus 217 ~~~v~V~mM 225 (395)
T 3b9f_I 217 ETVVRVPMM 225 (395)
T ss_dssp SCEEEEEEE
T ss_pred CeEEEEEEE
Confidence 444444443
No 294
>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B
Probab=23.15 E-value=17 Score=34.35 Aligned_cols=10 Identities=10% Similarity=0.295 Sum_probs=4.1
Q ss_pred CHHHHHHHhh
Q 015515 249 SHSHLASVLR 258 (405)
Q Consensus 249 d~~~I~eAL~ 258 (405)
+++.+...++
T Consensus 135 TL~el~~La~ 144 (254)
T 2bu3_A 135 TLDELGRLIA 144 (254)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 3444444443
No 295
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=22.95 E-value=18 Score=32.05 Aligned_cols=23 Identities=9% Similarity=0.260 Sum_probs=14.4
Q ss_pred HHHHhhhcCCCCCc-eecccccch
Q 015515 218 DHLIRFILKDPEGY-VPISTVASF 240 (405)
Q Consensus 218 ~fL~~~i~k~~eG~-Vpi~~i~sF 240 (405)
..|++.+..+.+|. |.+..++.+
T Consensus 94 ~~lf~~~D~d~dG~~I~f~EF~~~ 117 (214)
T 2l4h_A 94 ERICRVFSTSPAKDSLSFEDFLDL 117 (214)
T ss_dssp HHHHHHHCCSSSCCSEEHHHHHHH
T ss_pred HHHHHHhCcCCCCCEecHHHHHHH
Confidence 34566666677887 877655443
No 296
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=21.76 E-value=13 Score=34.35 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=20.1
Q ss_pred HHHHHHHhhcccc-ceeeccccccccCCC
Q 015515 250 HSHLASVLRKSSK-LVVSEDGKKIKRQNP 277 (405)
Q Consensus 250 ~~~I~eAL~~S~~-LeVsedg~kVRR~~P 277 (405)
+..|..||..|++ |....||..||-..|
T Consensus 99 i~~IekAI~~S~LglnP~~dG~~Iri~iP 127 (209)
T 4gfq_A 99 IGDIEKAILKADLGLNPSNDGTVIRIAFP 127 (209)
T ss_dssp HHHHHHHHHHHTSSCCCEECSSCEEEECC
T ss_pred HHHHHHHHHHcCCCCCCCcCCCceeeeCC
Confidence 4778899998874 555678877776543
No 297
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=21.74 E-value=19 Score=34.46 Aligned_cols=11 Identities=0% Similarity=0.159 Sum_probs=7.3
Q ss_pred ccEEEEEeCCH
Q 015515 347 KLHAFVEYESV 357 (405)
Q Consensus 347 KG~aFVEFes~ 357 (405)
+...||.|-+.
T Consensus 232 ~~~v~v~~G~~ 242 (398)
T 3oti_A 232 RPEVAITMGTI 242 (398)
T ss_dssp SCEEEECCTTT
T ss_pred CCEEEEEcCCC
Confidence 45677777665
No 298
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=21.57 E-value=20 Score=36.64 Aligned_cols=12 Identities=50% Similarity=1.021 Sum_probs=0.0
Q ss_pred CCCCccCCCccccC
Q 015515 128 QNYHHQQHQQHQHH 141 (405)
Q Consensus 128 ~~~~~~~h~~h~~~ 141 (405)
+.||| |||||||
T Consensus 1 ~~~~~--~~~~~~~ 12 (480)
T 2zyd_A 1 MGHHH--HHHHHHH 12 (480)
T ss_dssp --------------
T ss_pred CCccc--ccccccc
No 299
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=21.49 E-value=1.3e+02 Score=28.43 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=21.1
Q ss_pred eeEEeeCCCc----cccHHHHHHHHhhcCCeeEEEE
Q 015515 289 RIVVAENLPE----DHCHQNLMKIFSAVGSVKTIRT 320 (405)
Q Consensus 289 rtVyV~nLP~----d~t~e~L~~~Fs~fG~V~~Vri 320 (405)
.-|++-|+|. +.+.+.|.++. ++..|.-|+.
T Consensus 139 lPiilYn~P~~tg~~l~~~~~~~La-~~pnIvgiK~ 173 (303)
T 2wkj_A 139 LPMVVYNIPALSGVKLTLDQINTLV-TLPGVGALXQ 173 (303)
T ss_dssp CCEEEEECHHHHCCCCCHHHHHHHH-TSTTEEEEEE
T ss_pred CCEEEEeCccccCCCCCHHHHHHHh-cCCCEEEEeC
Confidence 4577778774 45677777776 4777777764
No 300
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=20.57 E-value=21 Score=34.00 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=6.1
Q ss_pred EEeCCHHHHHHHHHHH
Q 015515 352 VEYESVELAEKAIAEL 367 (405)
Q Consensus 352 VEFes~E~A~kAv~~l 367 (405)
|+.++.++|++.+..|
T Consensus 227 Vti~da~~a~~~f~~L 242 (268)
T 3k9f_C 227 VTIEDLARAERRVNVL 242 (268)
T ss_dssp EECSCSHHHHHHHHHH
T ss_pred EEcCcHHHHHHHHHHH
Confidence 3333333343333333
No 301
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=20.56 E-value=25 Score=27.07 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=14.9
Q ss_pred HHhhhcCCCCCceecccccch
Q 015515 220 LIRFILKDPEGYVPISTVASF 240 (405)
Q Consensus 220 L~~~i~k~~eG~Vpi~~i~sF 240 (405)
+++.+.++.+|+|..+.+..+
T Consensus 15 ~F~~~D~d~dG~I~~~el~~~ 35 (95)
T 1c07_A 15 IFLKTDKDMDGFVSGLEVREI 35 (95)
T ss_dssp HHHHHCTTCSSEECHHHHHHH
T ss_pred HHHHhCCCCCCcEeHHHHHHH
Confidence 455566788999988766554
No 302
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=20.37 E-value=21 Score=30.73 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=13.6
Q ss_pred ccEEEEEeCCH------HHHHHHHHHHc
Q 015515 347 KLHAFVEYESV------ELAEKAIAELN 368 (405)
Q Consensus 347 KG~aFVEFes~------E~A~kAv~~ln 368 (405)
+...+++|.+. +.+.++++.++
T Consensus 101 ~~~~~~~fGd~~~~fD~~~yn~lv~l~~ 128 (142)
T 2pi2_E 101 LCTSYVQFKEDSHPFDLGLYNEAVKIIH 128 (142)
T ss_dssp EEEEEEECCCSSSCCCHHHHHHHHHHHH
T ss_pred EEEEEEecCCCccccCHHHHHHHHHHHH
Confidence 45567888754 55566666555
No 303
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=20.35 E-value=21 Score=33.95 Aligned_cols=13 Identities=8% Similarity=-0.151 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHHH
Q 015515 355 ESVELAEKAIAEL 367 (405)
Q Consensus 355 es~E~A~kAv~~l 367 (405)
-+.++-+++++++
T Consensus 180 y~e~E~~~~~~~~ 192 (268)
T 3k9f_C 180 WTDGELEELRKQF 192 (268)
T ss_dssp CSHHHHHHHHHHS
T ss_pred eCHHHHHHHHHhc
Confidence 3445556666553
No 304
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=20.32 E-value=13 Score=32.37 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=15.8
Q ss_pred HHHHhhhcCCCCCceecccccch
Q 015515 218 DHLIRFILKDPEGYVPISTVASF 240 (405)
Q Consensus 218 ~fL~~~i~k~~eG~Vpi~~i~sF 240 (405)
..+++.+..+.+|+|....+..+
T Consensus 60 ~~~F~~~D~d~~G~Is~~El~~~ 82 (197)
T 3pm8_A 60 RNIFIALDVDNSGTLSSQEILDG 82 (197)
T ss_dssp HHHHHHHCTTCSSEECHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHH
Confidence 33455666788999987766654
No 305
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
Probab=20.19 E-value=24 Score=34.64 Aligned_cols=10 Identities=50% Similarity=1.198 Sum_probs=0.0
Q ss_pred CccCCCcccc
Q 015515 131 HHQQHQQHQH 140 (405)
Q Consensus 131 ~~~~h~~h~~ 140 (405)
|||+||||||
T Consensus 331 ~~~~~~~~~~ 340 (340)
T 2oxn_A 331 HHHHHHHHHH 340 (340)
T ss_dssp TTC-------
T ss_pred hcccccccCC
Done!