BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015516
         (405 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KUF|A Chain A, The Crystal Structure Of The Tudor Domains From Fxr1
 pdb|3O8V|A Chain A, Crystal Structure Of The Tudor Domains From Fxr1
          Length = 131

 Score = 30.8 bits (68), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 17/106 (16%)

Query: 250 DQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQ 309
           D  T  F+  + P        E  VP+  +R  P    P D+       ++  GD +E+ 
Sbjct: 25  DSLTVVFENNWQP--------ERQVPFNEVRLPP----PPDIK-----KEISEGDEVEVY 67

Query: 310 WRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTP 355
            R N + P GWW   V  ++       +  C  +   I+ F +  P
Sbjct: 68  SRANDQEPCGWWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRP 113


>pdb|2GLF|A Chain A, Crystal Structure Of Aminipeptidase (m18 Family) From
           Thermotoga Maritima
 pdb|2GLF|B Chain B, Crystal Structure Of Aminipeptidase (m18 Family) From
           Thermotoga Maritima
 pdb|2GLF|C Chain C, Crystal Structure Of Aminipeptidase (m18 Family) From
           Thermotoga Maritima
 pdb|2GLF|D Chain D, Crystal Structure Of Aminipeptidase (m18 Family) From
           Thermotoga Maritima
          Length = 450

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 15  FLNCLALKPLPPWA-RPTELRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSFK 72
            L+     PL  +A  P    + ++   K I+ F +   LK  LN+    I SP+L FK
Sbjct: 43  ILDESGFVPLEDFAGDPXNXTVYAVNRGKAIAAFRVVDDLKRGLNLVVAHIDSPRLDFK 101


>pdb|4IL2|A Chain A, Crystal Structure Of D-mannonate Dehydratase (rspa) From
           E. Coli Cft073 (efi Target Efi-501585)
 pdb|4IL2|B Chain B, Crystal Structure Of D-mannonate Dehydratase (rspa) From
           E. Coli Cft073 (efi Target Efi-501585)
 pdb|4IL2|C Chain C, Crystal Structure Of D-mannonate Dehydratase (rspa) From
           E. Coli Cft073 (efi Target Efi-501585)
 pdb|4IL2|D Chain D, Crystal Structure Of D-mannonate Dehydratase (rspa) From
           E. Coli Cft073 (efi Target Efi-501585)
          Length = 426

 Score = 29.6 bits (65), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 237 GFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVP 275
           G M+ C+    S D++ D + AR+   G + I ++CG+P
Sbjct: 138 GVMVYCHTTGHSIDEALDDY-ARHQELGFKAIRVQCGIP 175


>pdb|3H8Z|A Chain A, The Crystal Structure Of The Tudor Domains From Fxr2
          Length = 128

 Score = 28.9 bits (63), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 294 SDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVV 325
           +D   ++  GD +E+  R N++ P GWW   V
Sbjct: 55  ADYNKEITEGDEVEVYSRANEQEPCGWWLARV 86


>pdb|4E4F|A Chain A, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
           From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
 pdb|4E4F|B Chain B, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
           From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
 pdb|4E4F|C Chain C, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
           From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
 pdb|4E4F|D Chain D, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
           From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
          Length = 426

 Score = 28.5 bits (62), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 236 VGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVP 275
            G M+ C+    S D+  D + A++   G + I ++CGVP
Sbjct: 137 TGVMVYCHTTGHSIDEVLDDY-AKHRDQGFKAIRVQCGVP 175


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.455 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,014,873
Number of Sequences: 62578
Number of extensions: 548139
Number of successful extensions: 855
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 6
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)