Query 015517
Match_columns 405
No_of_seqs 254 out of 1611
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:03:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 1E-107 3E-112 831.6 32.6 357 45-403 30-391 (524)
2 PLN02998 beta-glucosidase 100.0 6.6E-97 1E-101 768.7 28.8 317 45-363 24-341 (497)
3 PLN02849 beta-glucosidase 100.0 1.3E-96 3E-101 767.5 29.8 315 45-363 23-337 (503)
4 PLN02814 beta-glucosidase 100.0 1.7E-95 4E-100 759.2 30.5 312 47-363 23-335 (504)
5 COG2723 BglB Beta-glucosidase/ 100.0 3E-94 6.6E-99 728.5 25.7 335 50-399 2-350 (460)
6 PRK09593 arb 6-phospho-beta-gl 100.0 1.3E-90 2.9E-95 720.0 30.1 300 50-364 4-323 (478)
7 PRK13511 6-phospho-beta-galact 100.0 1.1E-90 2.4E-95 720.1 29.4 295 50-363 3-307 (469)
8 PRK09589 celA 6-phospho-beta-g 100.0 1.3E-90 2.8E-95 719.7 28.4 297 51-362 3-320 (476)
9 TIGR01233 lacG 6-phospho-beta- 100.0 2.3E-90 4.9E-95 716.8 29.8 293 51-362 3-305 (467)
10 PF00232 Glyco_hydro_1: Glycos 100.0 5.4E-91 1.2E-95 721.5 24.2 301 50-365 3-307 (455)
11 PRK15014 6-phospho-beta-glucos 100.0 8E-90 1.7E-94 713.5 29.1 301 48-363 2-323 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 3.7E-89 8E-94 707.6 28.3 298 51-363 3-319 (474)
13 TIGR03356 BGL beta-galactosida 100.0 8.3E-88 1.8E-92 691.7 27.1 296 52-363 1-296 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.3 3E-12 6.5E-17 130.0 8.7 109 105-217 10-141 (374)
15 PF00150 Cellulase: Cellulase 99.3 9.4E-12 2E-16 119.6 9.1 109 106-217 22-134 (281)
16 smart00633 Glyco_10 Glycosyl h 98.7 4.3E-08 9.4E-13 94.6 8.8 83 126-216 1-85 (254)
17 COG1874 LacA Beta-galactosidas 98.4 8.5E-07 1.8E-11 95.7 9.1 107 106-216 31-163 (673)
18 COG2730 BglC Endoglucanase [Ca 98.2 4.5E-06 9.7E-11 86.1 9.5 109 108-216 76-193 (407)
19 PF07745 Glyco_hydro_53: Glyco 97.9 0.00028 6.1E-09 70.8 14.4 142 108-283 27-177 (332)
20 PF01229 Glyco_hydro_39: Glyco 97.8 7.7E-05 1.7E-09 78.7 9.2 106 107-217 41-168 (486)
21 PF01301 Glyco_hydro_35: Glyco 97.5 0.00036 7.8E-09 69.8 7.9 109 106-215 25-151 (319)
22 PF00331 Glyco_hydro_10: Glyco 97.2 0.0013 2.7E-08 65.9 9.0 88 125-217 43-137 (320)
23 PF01373 Glyco_hydro_14: Glyco 97.2 0.00052 1.1E-08 70.0 5.3 105 104-214 15-150 (402)
24 PLN02803 beta-amylase 97.0 0.0031 6.7E-08 66.1 9.0 107 105-216 107-252 (548)
25 PLN00197 beta-amylase; Provisi 97.0 0.0033 7.3E-08 66.1 9.1 107 105-216 127-272 (573)
26 PLN02161 beta-amylase 96.9 0.004 8.8E-08 65.0 9.1 111 101-216 113-262 (531)
27 PF02836 Glyco_hydro_2_C: Glyc 96.9 0.0065 1.4E-07 59.8 9.9 92 104-214 35-132 (298)
28 PLN03059 beta-galactosidase; P 96.8 0.0057 1.2E-07 67.8 10.0 108 105-214 59-187 (840)
29 PF13204 DUF4038: Protein of u 96.7 0.014 3.1E-07 57.6 11.1 102 108-214 33-156 (289)
30 PLN02801 beta-amylase 96.7 0.0091 2E-07 62.4 9.8 99 104-205 36-173 (517)
31 COG3693 XynA Beta-1,4-xylanase 96.4 0.0075 1.6E-07 59.8 6.9 87 124-216 65-153 (345)
32 PLN02905 beta-amylase 96.4 0.019 4.2E-07 61.3 10.0 100 102-204 283-421 (702)
33 PLN02705 beta-amylase 96.3 0.02 4.3E-07 61.0 9.7 99 103-204 266-403 (681)
34 PF14587 Glyco_hydr_30_2: O-Gl 96.2 0.0071 1.5E-07 61.6 5.6 100 116-216 58-185 (384)
35 PRK10150 beta-D-glucuronidase; 96.1 0.024 5.3E-07 61.4 9.5 93 105-214 313-418 (604)
36 COG3867 Arabinogalactan endo-1 96.0 0.36 7.8E-06 47.7 15.9 135 51-215 34-182 (403)
37 PF14488 DUF4434: Domain of un 95.4 0.1 2.3E-06 47.3 9.2 101 106-215 21-131 (166)
38 KOG0496 Beta-galactosidase [Ca 94.3 0.2 4.3E-06 54.1 9.1 94 106-201 50-155 (649)
39 PRK09525 lacZ beta-D-galactosi 94.2 0.21 4.5E-06 57.6 9.6 91 103-215 369-464 (1027)
40 COG3934 Endo-beta-mannanase [C 93.7 0.035 7.6E-07 57.7 1.9 108 107-216 28-150 (587)
41 PRK10340 ebgA cryptic beta-D-g 93.1 0.41 8.9E-06 55.3 9.6 89 104-214 354-450 (1021)
42 COG3250 LacZ Beta-galactosidas 92.0 0.78 1.7E-05 51.5 9.7 90 101-215 317-408 (808)
43 COG3664 XynB Beta-xylosidase [ 87.5 0.8 1.7E-05 47.1 4.8 101 114-219 14-119 (428)
44 smart00642 Aamy Alpha-amylase 87.3 1.7 3.7E-05 39.3 6.4 63 104-166 18-91 (166)
45 PF03198 Glyco_hydro_72: Gluca 84.4 3.9 8.4E-05 40.9 7.7 89 106-213 54-144 (314)
46 PLN02361 alpha-amylase 82.9 3 6.5E-05 43.2 6.6 64 102-165 26-96 (401)
47 PF14871 GHL6: Hypothetical gl 82.2 16 0.00036 31.8 10.0 91 109-201 4-123 (132)
48 PF07488 Glyco_hydro_67M: Glyc 81.6 13 0.00028 37.1 9.9 87 104-203 56-150 (328)
49 PF02638 DUF187: Glycosyl hydr 81.5 6.9 0.00015 39.1 8.4 98 105-202 19-154 (311)
50 PLN00196 alpha-amylase; Provis 79.4 3.8 8.2E-05 42.8 5.9 63 103-165 42-112 (428)
51 cd02803 OYE_like_FMN_family Ol 79.0 41 0.00089 33.2 13.1 149 132-305 64-239 (327)
52 KOG2233 Alpha-N-acetylglucosam 79.0 5 0.00011 42.3 6.5 111 104-214 77-248 (666)
53 PRK05402 glycogen branching en 78.7 11 0.00024 42.1 9.6 93 104-202 264-397 (726)
54 PF00128 Alpha-amylase: Alpha 78.5 4.8 0.0001 38.5 6.0 60 107-166 6-73 (316)
55 PF05089 NAGLU: Alpha-N-acetyl 78.3 3.4 7.4E-05 41.6 5.0 110 104-215 18-185 (333)
56 TIGR02402 trehalose_TreZ malto 76.9 10 0.00023 40.8 8.6 92 104-202 110-237 (542)
57 PRK12313 glycogen branching en 76.4 13 0.00028 40.8 9.2 93 104-202 169-302 (633)
58 cd04733 OYE_like_2_FMN Old yel 75.3 94 0.002 31.2 15.3 153 129-304 63-246 (338)
59 PF10566 Glyco_hydro_97: Glyco 74.9 17 0.00037 35.8 8.6 118 79-200 10-149 (273)
60 PRK09441 cytoplasmic alpha-amy 73.1 6.4 0.00014 41.5 5.7 64 102-165 19-101 (479)
61 cd02932 OYE_YqiM_FMN Old yello 72.4 1.1E+02 0.0024 30.6 14.6 39 130-168 62-100 (336)
62 PRK12581 oxaloacetate decarbox 71.8 13 0.00028 39.3 7.5 56 103-171 98-158 (468)
63 cd07939 DRE_TIM_NifV Streptomy 71.1 13 0.00029 35.7 7.0 59 107-165 71-130 (259)
64 PLN02784 alpha-amylase 71.0 10 0.00022 42.9 6.8 66 102-167 518-592 (894)
65 cd06543 GH18_PF-ChiA-like PF-C 70.6 21 0.00045 35.5 8.3 78 112-202 19-104 (294)
66 PRK14041 oxaloacetate decarbox 69.9 16 0.00035 38.7 7.7 56 103-171 88-148 (467)
67 cd07945 DRE_TIM_CMS Leptospira 69.9 14 0.0003 36.3 6.9 82 107-199 76-158 (280)
68 PRK05799 coproporphyrinogen II 69.7 11 0.00023 38.4 6.2 95 107-218 98-196 (374)
69 cd06592 GH31_glucosidase_KIAA1 68.2 25 0.00054 34.8 8.4 105 107-215 32-167 (303)
70 PF12876 Cellulase-like: Sugar 67.9 2.8 6.1E-05 33.6 1.3 19 197-215 1-22 (88)
71 TIGR01515 branching_enzym alph 67.7 33 0.00072 37.5 9.9 99 104-202 155-288 (613)
72 PRK14705 glycogen branching en 67.2 32 0.00069 40.7 10.0 94 108-202 768-897 (1224)
73 TIGR02403 trehalose_treC alpha 67.1 8.7 0.00019 41.3 5.2 63 104-166 26-96 (543)
74 PRK14040 oxaloacetate decarbox 66.0 20 0.00044 39.1 7.7 52 103-167 90-146 (593)
75 cd03174 DRE_TIM_metallolyase D 65.7 19 0.00041 34.2 6.8 82 108-202 77-159 (265)
76 TIGR02090 LEU1_arch isopropylm 65.4 18 0.0004 36.8 6.9 60 107-166 73-133 (363)
77 PF12891 Glyco_hydro_44: Glyco 65.0 27 0.00059 33.6 7.5 117 145-288 24-186 (239)
78 PRK10933 trehalose-6-phosphate 64.9 10 0.00022 40.9 5.2 63 104-166 32-102 (551)
79 COG3589 Uncharacterized conser 64.4 32 0.00069 34.8 8.1 72 108-193 19-90 (360)
80 PRK12568 glycogen branching en 63.5 26 0.00057 39.1 8.1 93 104-202 268-401 (730)
81 PRK09505 malS alpha-amylase; R 63.2 15 0.00032 40.8 6.1 60 107-166 232-313 (683)
82 cd07937 DRE_TIM_PC_TC_5S Pyruv 61.3 46 0.001 32.5 8.7 46 107-165 93-138 (275)
83 COG0821 gcpE 1-hydroxy-2-methy 60.9 68 0.0015 32.5 9.6 88 99-200 78-165 (361)
84 TIGR02456 treS_nterm trehalose 60.9 12 0.00027 40.1 4.9 59 107-165 30-96 (539)
85 PRK10785 maltodextrin glucosid 60.6 16 0.00036 39.8 5.9 59 106-166 180-247 (598)
86 cd07948 DRE_TIM_HCS Saccharomy 60.5 16 0.00035 35.5 5.3 60 107-166 73-133 (262)
87 PLN02447 1,4-alpha-glucan-bran 60.4 17 0.00037 40.7 6.0 99 104-202 249-383 (758)
88 COG1523 PulA Type II secretory 60.4 20 0.00043 39.9 6.4 55 111-165 206-285 (697)
89 cd07944 DRE_TIM_HOA_like 4-hyd 59.8 35 0.00076 33.2 7.5 65 108-199 85-149 (266)
90 cd06593 GH31_xylosidase_YicI Y 59.5 60 0.0013 31.9 9.3 105 107-214 26-160 (308)
91 PRK14511 maltooligosyl trehalo 59.4 18 0.00038 41.3 5.9 55 105-165 20-89 (879)
92 PRK12858 tagatose 1,6-diphosph 59.3 38 0.00083 34.4 7.9 52 111-165 112-163 (340)
93 PRK05692 hydroxymethylglutaryl 59.0 30 0.00066 34.1 7.0 85 106-199 80-166 (287)
94 PRK12331 oxaloacetate decarbox 57.2 43 0.00093 35.3 8.0 93 107-216 98-210 (448)
95 PLN02746 hydroxymethylglutaryl 57.2 35 0.00076 34.8 7.1 84 107-199 123-208 (347)
96 PRK03705 glycogen debranching 56.2 27 0.00058 38.7 6.6 91 111-202 185-329 (658)
97 PF03659 Glyco_hydro_71: Glyco 55.6 53 0.0011 33.9 8.3 50 106-165 18-67 (386)
98 TIGR00433 bioB biotin syntheta 55.5 34 0.00074 33.2 6.7 56 107-165 122-178 (296)
99 PRK08255 salicylyl-CoA 5-hydro 55.3 3.4E+02 0.0073 30.6 15.2 199 129-353 459-717 (765)
100 TIGR02401 trehalose_TreY malto 55.3 22 0.00049 40.2 5.8 65 105-169 16-91 (825)
101 TIGR01210 conserved hypothetic 54.8 66 0.0014 32.1 8.6 109 108-229 117-229 (313)
102 PRK12399 tagatose 1,6-diphosph 54.7 57 0.0012 32.9 8.0 58 111-171 111-168 (324)
103 PRK04161 tagatose 1,6-diphosph 54.6 59 0.0013 32.8 8.1 59 110-171 112-170 (329)
104 PRK14706 glycogen branching en 53.8 74 0.0016 35.1 9.5 89 112-202 175-299 (639)
105 TIGR02660 nifV_homocitr homoci 53.7 46 0.00099 33.9 7.4 60 107-166 74-134 (365)
106 PRK09058 coproporphyrinogen II 53.5 50 0.0011 34.6 7.9 107 107-228 162-270 (449)
107 PRK00366 ispG 4-hydroxy-3-meth 52.8 83 0.0018 32.1 8.9 75 115-200 98-172 (360)
108 PRK14510 putative bifunctional 52.2 17 0.00038 43.0 4.6 57 109-165 191-267 (1221)
109 TIGR03217 4OH_2_O_val_ald 4-hy 52.2 1.5E+02 0.0032 30.0 10.7 55 107-174 89-145 (333)
110 cd06601 GH31_lyase_GLase GLase 51.4 52 0.0011 33.2 7.3 70 148-220 67-140 (332)
111 PRK11858 aksA trans-homoaconit 51.0 55 0.0012 33.5 7.6 59 108-166 78-137 (378)
112 cd07943 DRE_TIM_HOA 4-hydroxy- 50.2 1.3E+02 0.0029 28.9 9.8 46 108-166 88-133 (263)
113 cd06603 GH31_GANC_GANAB_alpha 49.3 78 0.0017 31.8 8.3 71 148-218 67-167 (339)
114 TIGR01108 oadA oxaloacetate de 48.9 68 0.0015 35.0 8.2 94 107-217 93-206 (582)
115 cd07941 DRE_TIM_LeuA3 Desulfob 48.8 56 0.0012 31.8 6.9 81 108-199 81-162 (273)
116 cd06602 GH31_MGAM_SI_GAA This 48.7 85 0.0018 31.6 8.4 68 148-216 69-168 (339)
117 TIGR00539 hemN_rel putative ox 48.3 40 0.00087 34.1 6.1 92 107-215 99-194 (360)
118 TIGR03234 OH-pyruv-isom hydrox 48.2 56 0.0012 30.9 6.7 66 103-171 82-150 (254)
119 TIGR00612 ispG_gcpE 1-hydroxy- 48.0 1.3E+02 0.0027 30.7 9.2 89 98-200 75-163 (346)
120 cd06598 GH31_transferase_CtsZ 47.7 1.2E+02 0.0027 30.1 9.3 68 147-217 72-168 (317)
121 cd06600 GH31_MGAM-like This fa 47.0 1.4E+02 0.0031 29.7 9.6 70 147-217 66-164 (317)
122 COG1501 Alpha-glucosidases, fa 46.7 76 0.0016 35.9 8.3 101 117-220 294-422 (772)
123 PLN02960 alpha-amylase 46.3 38 0.00083 38.6 5.8 94 103-202 414-549 (897)
124 COG5016 Pyruvate/oxaloacetate 45.6 82 0.0018 32.9 7.6 52 103-167 91-147 (472)
125 cd07940 DRE_TIM_IPMS 2-isoprop 45.1 65 0.0014 31.1 6.7 79 108-202 72-156 (268)
126 TIGR03471 HpnJ hopanoid biosyn 44.0 74 0.0016 33.4 7.4 60 108-171 287-348 (472)
127 cd07938 DRE_TIM_HMGL 3-hydroxy 44.0 89 0.0019 30.5 7.5 86 107-202 75-162 (274)
128 PRK14507 putative bifunctional 43.0 60 0.0013 39.8 7.1 66 104-169 757-833 (1693)
129 TIGR02100 glgX_debranch glycog 42.7 64 0.0014 36.0 6.9 92 111-202 190-334 (688)
130 cd07947 DRE_TIM_Re_CS Clostrid 41.7 62 0.0013 31.8 6.0 59 107-165 76-135 (279)
131 TIGR01211 ELP3 histone acetylt 41.5 1.1E+02 0.0023 33.0 8.2 106 107-229 205-316 (522)
132 cd06542 GH18_EndoS-like Endo-b 41.1 99 0.0022 29.3 7.3 56 143-202 49-104 (255)
133 cd06591 GH31_xylosidase_XylS X 41.1 1.7E+02 0.0037 29.0 9.2 69 147-217 68-163 (319)
134 TIGR02104 pulA_typeI pullulana 40.0 64 0.0014 35.2 6.4 93 110-202 169-312 (605)
135 PRK08599 coproporphyrinogen II 39.9 1.4E+02 0.003 30.3 8.5 95 107-218 99-197 (377)
136 KOG1065 Maltase glucoamylase a 39.6 1.2E+02 0.0026 34.3 8.3 105 109-219 315-454 (805)
137 cd02742 GH20_hexosaminidase Be 39.4 1E+02 0.0022 30.5 7.2 64 106-175 17-99 (303)
138 PRK07379 coproporphyrinogen II 39.0 1.4E+02 0.003 30.8 8.4 104 107-227 114-221 (400)
139 PF01055 Glyco_hydro_31: Glyco 38.6 95 0.0021 32.1 7.2 107 107-217 45-184 (441)
140 PF00682 HMGL-like: HMGL-like 36.4 85 0.0018 29.4 5.9 79 108-200 66-149 (237)
141 TIGR01212 radical SAM protein, 36.3 86 0.0019 31.0 6.1 73 144-229 162-234 (302)
142 PRK08208 coproporphyrinogen II 36.1 1.2E+02 0.0025 31.7 7.3 61 107-171 140-203 (430)
143 PRK05628 coproporphyrinogen II 35.5 1.7E+02 0.0037 29.7 8.3 96 107-219 107-206 (375)
144 TIGR00538 hemN oxygen-independ 35.4 56 0.0012 34.2 4.9 77 107-199 150-229 (455)
145 cd06545 GH18_3CO4_chitinase Th 35.0 1.2E+02 0.0026 28.9 6.8 54 145-202 46-99 (253)
146 PLN02389 biotin synthase 34.7 1.2E+02 0.0026 31.2 7.0 58 106-166 176-234 (379)
147 PF04914 DltD_C: DltD C-termin 34.7 1.5E+02 0.0033 25.7 6.7 56 145-204 36-91 (130)
148 TIGR02629 L_rham_iso_rhiz L-rh 34.5 1.5E+02 0.0031 31.1 7.5 89 107-209 72-171 (412)
149 PLN02229 alpha-galactosidase 34.2 1E+02 0.0022 32.4 6.4 57 107-163 82-146 (427)
150 PRK09282 pyruvate carboxylase 34.0 1.6E+02 0.0034 32.3 8.1 93 107-216 98-210 (592)
151 smart00729 Elp3 Elongator prot 33.9 2.2E+02 0.0047 25.0 8.0 58 105-165 97-157 (216)
152 cd02929 TMADH_HD_FMN Trimethyl 33.5 5.3E+02 0.012 26.2 14.8 130 137-290 75-232 (370)
153 PRK06294 coproporphyrinogen II 33.2 2.2E+02 0.0048 28.9 8.7 94 107-217 102-199 (370)
154 PRK08446 coproporphyrinogen II 33.1 1.8E+02 0.004 29.2 8.0 91 108-215 98-192 (350)
155 PF03511 Fanconi_A: Fanconi an 33.1 31 0.00068 26.2 1.8 38 129-168 19-56 (64)
156 PRK08195 4-hyroxy-2-oxovalerat 32.6 1E+02 0.0022 31.2 6.0 47 108-167 91-137 (337)
157 COG0366 AmyA Glycosidases [Car 32.3 1E+02 0.0022 31.9 6.3 59 109-167 33-101 (505)
158 cd06599 GH31_glycosidase_Aec37 32.3 2.3E+02 0.0049 28.2 8.5 35 181-216 137-171 (317)
159 cd06565 GH20_GcnA-like Glycosy 32.2 1.9E+02 0.0042 28.5 7.9 62 107-175 19-87 (301)
160 cd06589 GH31 The enzymes of gl 32.0 1.6E+02 0.0034 28.4 7.0 52 147-217 68-120 (265)
161 PRK13347 coproporphyrinogen II 31.8 79 0.0017 33.1 5.3 60 107-171 151-214 (453)
162 TIGR03581 EF_0839 conserved hy 31.7 1.8E+02 0.0038 27.9 6.9 52 104-163 134-207 (236)
163 PRK07094 biotin synthase; Prov 31.2 90 0.002 30.8 5.4 57 106-165 127-185 (323)
164 PRK09856 fructoselysine 3-epim 31.1 72 0.0016 30.4 4.6 62 103-165 88-149 (275)
165 PRK12677 xylose isomerase; Pro 30.9 3.6E+02 0.0078 27.7 9.8 90 107-203 33-128 (384)
166 PF04551 GcpE: GcpE protein; 30.8 1.5E+02 0.0033 30.3 6.8 86 99-198 78-170 (359)
167 PLN02925 4-hydroxy-3-methylbut 30.7 1.5E+02 0.0033 33.0 7.2 53 147-200 212-264 (733)
168 PF10566 Glyco_hydro_97: Glyco 30.7 82 0.0018 31.0 4.8 68 107-185 108-175 (273)
169 PRK13398 3-deoxy-7-phosphohept 30.3 2E+02 0.0042 28.1 7.4 71 101-174 37-107 (266)
170 PRK12330 oxaloacetate decarbox 30.2 1.8E+02 0.0038 31.3 7.5 95 107-217 99-214 (499)
171 PRK09936 hypothetical protein; 30.2 4.3E+02 0.0092 26.4 9.6 61 107-175 40-100 (296)
172 PRK10605 N-ethylmaleimide redu 30.2 6E+02 0.013 25.8 16.3 192 137-353 71-321 (362)
173 PRK09249 coproporphyrinogen II 30.2 1.5E+02 0.0033 31.0 7.1 61 107-171 150-213 (453)
174 PRK08207 coproporphyrinogen II 30.0 1.6E+02 0.0035 31.3 7.3 91 108-215 269-363 (488)
175 PF01261 AP_endonuc_2: Xylose 29.6 65 0.0014 28.7 3.7 62 104-165 70-132 (213)
176 COG3534 AbfA Alpha-L-arabinofu 29.5 3.9E+02 0.0084 28.5 9.6 94 107-215 50-175 (501)
177 cd06568 GH20_SpHex_like A subg 29.5 2.3E+02 0.005 28.4 8.0 64 106-175 19-102 (329)
178 TIGR00542 hxl6Piso_put hexulos 29.1 1.1E+02 0.0023 29.4 5.4 60 104-165 93-153 (279)
179 TIGR02635 RhaI_grampos L-rhamn 29.0 2.2E+02 0.0049 29.3 7.9 84 108-208 43-136 (378)
180 TIGR01232 lacD tagatose 1,6-di 28.8 2.7E+02 0.0058 28.2 8.1 60 110-172 111-170 (325)
181 PF04028 DUF374: Domain of unk 28.7 2.1E+02 0.0045 22.4 5.9 40 112-165 27-66 (74)
182 cd02874 GH18_CFLE_spore_hydrol 28.4 1.7E+02 0.0038 28.6 6.8 84 111-202 16-103 (313)
183 TIGR01531 glyc_debranch glycog 28.0 2.4E+02 0.0052 34.1 8.6 70 102-176 129-219 (1464)
184 cd06562 GH20_HexA_HexB-like Be 27.9 1.8E+02 0.0039 29.4 6.9 63 106-174 19-96 (348)
185 TIGR02102 pullulan_Gpos pullul 27.9 3.6E+02 0.0077 32.0 10.0 99 104-202 479-635 (1111)
186 PRK14042 pyruvate carboxylase 27.6 2.3E+02 0.005 31.1 8.0 48 104-164 90-142 (596)
187 PRK13523 NADPH dehydrogenase N 27.3 6.5E+02 0.014 25.3 11.3 141 137-303 73-236 (337)
188 PF02055 Glyco_hydro_30: O-Gly 27.2 74 0.0016 34.0 4.1 100 116-217 111-236 (496)
189 PF04055 Radical_SAM: Radical 27.2 89 0.0019 26.3 4.0 52 108-161 90-143 (166)
190 COG3623 SgaU Putative L-xylulo 26.8 4.5E+02 0.0097 25.7 8.8 105 106-219 19-164 (287)
191 cd06604 GH31_glucosidase_II_Ma 26.3 4E+02 0.0086 26.6 9.1 67 148-217 67-163 (339)
192 TIGR00674 dapA dihydrodipicoli 26.0 2.9E+02 0.0062 26.8 7.8 64 136-213 13-76 (285)
193 PRK13209 L-xylulose 5-phosphat 25.6 5.9E+02 0.013 24.2 10.2 53 107-163 23-75 (283)
194 COG5520 O-Glycosyl hydrolase [ 25.4 2.2E+02 0.0048 29.3 6.8 94 116-217 77-181 (433)
195 PRK11572 copper homeostasis pr 25.2 2E+02 0.0044 27.9 6.4 43 103-154 71-113 (248)
196 PRK00230 orotidine 5'-phosphat 24.9 97 0.0021 29.4 4.1 61 99-172 7-67 (230)
197 PF04646 DUF604: Protein of un 24.9 28 0.0006 33.9 0.4 72 153-227 76-147 (255)
198 PTZ00445 p36-lilke protein; Pr 24.9 1.5E+02 0.0032 28.3 5.2 57 110-166 34-99 (219)
199 cd00019 AP2Ec AP endonuclease 24.8 5.7E+02 0.012 24.3 9.6 55 105-164 10-65 (279)
200 cd02871 GH18_chitinase_D-like 24.5 2.1E+02 0.0046 28.3 6.7 50 146-202 61-110 (312)
201 cd00950 DHDPS Dihydrodipicolin 24.2 3.2E+02 0.0068 26.4 7.7 63 136-212 15-77 (284)
202 PRK06256 biotin synthase; Vali 23.7 1.3E+02 0.0029 29.8 5.1 57 106-165 150-207 (336)
203 PF04007 DUF354: Protein of un 23.0 1.2E+02 0.0026 30.6 4.6 39 140-178 9-47 (335)
204 PRK10426 alpha-glucosidase; Pr 22.7 7.1E+02 0.015 27.5 10.8 105 107-214 223-364 (635)
205 PF03932 CutC: CutC family; I 22.3 2.3E+02 0.0051 26.5 6.0 43 104-155 71-113 (201)
206 PRK07106 5-aminoimidazole-4-ca 22.2 1.1E+02 0.0024 31.6 4.1 50 99-164 334-383 (390)
207 PRK09389 (R)-citramalate synth 22.1 1.5E+02 0.0033 31.6 5.3 106 107-217 75-200 (488)
208 PTZ00445 p36-lilke protein; Pr 22.0 1.2E+02 0.0026 28.9 4.0 50 146-199 30-89 (219)
209 cd02930 DCR_FMN 2,4-dienoyl-Co 22.0 8.1E+02 0.018 24.6 13.7 144 137-304 69-234 (353)
210 cd06525 GH25_Lyc-like Lyc mura 21.8 5.9E+02 0.013 22.8 8.7 24 184-207 99-122 (184)
211 PRK05904 coproporphyrinogen II 21.7 3.9E+02 0.0084 27.1 8.0 92 108-216 103-198 (353)
212 PRK13210 putative L-xylulose 5 21.7 1.7E+02 0.0036 27.9 5.2 61 104-166 93-154 (284)
213 PRK01060 endonuclease IV; Prov 21.6 3.6E+02 0.0078 25.6 7.5 50 107-161 14-63 (281)
214 COG0138 PurH AICAR transformyl 21.6 1.3E+02 0.0027 32.2 4.4 54 99-168 459-513 (515)
215 TIGR00542 hxl6Piso_put hexulos 21.5 7.1E+02 0.015 23.7 10.1 54 106-163 17-70 (279)
216 PF13812 PPR_3: Pentatricopept 21.5 56 0.0012 20.1 1.3 15 147-161 20-34 (34)
217 cd00408 DHDPS-like Dihydrodipi 21.5 4.2E+02 0.009 25.4 7.9 64 136-213 12-75 (281)
218 TIGR01235 pyruv_carbox pyruvat 21.3 3.1E+02 0.0066 32.6 8.0 22 104-125 619-645 (1143)
219 PF06415 iPGM_N: BPG-independe 21.2 2.1E+02 0.0046 27.3 5.5 59 103-166 44-102 (223)
220 smart00052 EAL Putative diguan 21.1 2.2E+02 0.0048 25.9 5.7 62 98-164 148-209 (241)
221 cd01335 Radical_SAM Radical SA 20.9 1.3E+02 0.0028 25.9 3.9 58 107-165 87-145 (204)
222 PF07555 NAGidase: beta-N-acet 20.8 3.8E+02 0.0083 26.8 7.5 85 108-210 18-110 (306)
223 TIGR02026 BchE magnesium-proto 20.6 3E+02 0.0065 29.2 7.2 60 108-171 287-348 (497)
224 PF15234 LAT: Linker for activ 20.6 1E+02 0.0022 28.6 3.1 24 4-27 10-33 (230)
225 PRK09856 fructoselysine 3-epim 20.4 3.9E+02 0.0084 25.3 7.4 52 106-163 14-65 (275)
226 PF11057 Cortexin: Cortexin of 20.3 65 0.0014 25.5 1.5 45 7-52 31-76 (81)
227 cd06570 GH20_chitobiase-like_1 20.2 3.8E+02 0.0082 26.7 7.4 62 106-173 19-93 (311)
228 cd06563 GH20_chitobiase-like T 20.0 3.3E+02 0.0071 27.5 7.1 63 106-174 19-112 (357)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-107 Score=831.55 Aligned_cols=357 Identities=56% Similarity=1.020 Sum_probs=335.2
Q ss_pred CCCCcCCCCCCCchhhhhhhhhcccccCCCCCcCchhhccccc-CCcccCCCCCCCCcccccchHHHHHHHHhCCCCEEE
Q 015517 45 GGLSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKK-PGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYR 123 (405)
Q Consensus 45 ~~~~~~~fP~~FlwG~atsa~Q~EG~~~~~gkg~s~wD~~~~~-~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~~R 123 (405)
..+.+.+||+||+||+||||||+|||+++||||+|+||+|+|. |+++.+++++|+|||+||||+|||+|||+||+++||
T Consensus 30 ~~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afR 109 (524)
T KOG0626|consen 30 TKFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFR 109 (524)
T ss_pred CcccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEE
Confidence 4667889999999999999999999999999999999999987 557778888999999999999999999999999999
Q ss_pred ecccccccccCCC--CCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHc
Q 015517 124 FSISWSRIFPYGT--GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTF 201 (405)
Q Consensus 124 fsi~Wsri~P~~~--g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~f 201 (405)
|||+||||+|.|+ +.+|++||+||+++|++|+++||+|+|||+|||+||+|+++||||+|++++++|.+||+.||++|
T Consensus 110 FSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~f 189 (524)
T KOG0626|consen 110 FSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEF 189 (524)
T ss_pred EEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHh
Confidence 9999999999997 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEeccccchhhcccCCCCCCCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEE
Q 015517 202 GDRVKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGIL 281 (405)
Q Consensus 202 gd~V~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHA~Av~~~r~~~~~~~~~kIGi~ 281 (405)
||+||+|+|||||++++..||..|..|||+|+.+..+|..|+|.+++|+|.||||||||+||++||+.++..|+|+|||+
T Consensus 190 GDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~ 269 (524)
T KOG0626|consen 190 GDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIA 269 (524)
T ss_pred cccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEE
Confidence 99999999999999999999999999999999755699999999999999999999999999999999998999999999
Q ss_pred ecCceeecCCCCHHHHHHHHHHHHhhcccccchhhcCcCChhhHhHhhccCCCCCHHHHHHhcCCCcEEEecccCCceee
Q 015517 282 LDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYMY 361 (405)
Q Consensus 282 ~~~~~~~P~s~~~~D~~AA~~~~~~~~~~flDpi~~G~YP~~~~~~l~~~lp~ft~ed~~~ikgs~DFiGiNYYts~~v~ 361 (405)
+...|++|++++++|++||+|+.+|..+||++|++.|+||..|++.+++|||+||++|+++|||+.||+|||||++.+|+
T Consensus 270 ~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~ 349 (524)
T KOG0626|consen 270 LSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVK 349 (524)
T ss_pred EeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhh
Confidence 99999999999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCCCCCcCCCcceeeeccCC-ccccCCCCCCceEecc
Q 015517 362 DPHLK-QPKQVGYQQDWNAGFAYEKNG-VPIGPRVCLLQLHLLF 403 (405)
Q Consensus 362 ~~~~~-~~~~~~~~~d~~~~~~~~~~g-~~~g~~~~~~wly~~~ 403 (405)
..+.+ ..+.+.+..|..+.. ..+| .++|..+.+.|++++.
T Consensus 350 ~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~v~P 391 (524)
T KOG0626|consen 350 HLKPPPDPSQPGWSTDSGVDW--TLEGNDLIGPKAGSDWLPVYP 391 (524)
T ss_pred ccCCCCCCCCcccccccceee--eecccccccccccccceeecc
Confidence 86642 233455667766654 4455 7899999999999874
No 2
>PLN02998 beta-glucosidase
Probab=100.00 E-value=6.6e-97 Score=768.73 Aligned_cols=317 Identities=54% Similarity=0.976 Sum_probs=294.0
Q ss_pred CCCCcCCCCCCCchhhhhhhhhcccccCCCCCcCchhhcccccCCcccCCCCCCCCcccccchHHHHHHHHhCCCCEEEe
Q 015517 45 GGLSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRF 124 (405)
Q Consensus 45 ~~~~~~~fP~~FlwG~atsa~Q~EG~~~~~gkg~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~~Rf 124 (405)
..+.+.+||++|+||+||||||+||++++||||+|+||.++| ++ ..+..++++||||||||+|||+|||+||+++|||
T Consensus 24 ~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~-~~-~~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YRf 101 (497)
T PLN02998 24 LKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH-AG-HSGVAAGNVACDQYHKYKEDVKLMADMGLEAYRF 101 (497)
T ss_pred ccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-cC-cCCCCCCcccccHHHhhHHHHHHHHHcCCCeEEe
Confidence 346677899999999999999999999999999999999988 34 2222478899999999999999999999999999
Q ss_pred cccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHcCCC
Q 015517 125 SISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDR 204 (405)
Q Consensus 125 si~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~fgd~ 204 (405)
||+||||+|+|+|.+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||+|++++++|++||++|+++|||+
T Consensus 102 SIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdr 181 (497)
T PLN02998 102 SISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGDR 181 (497)
T ss_pred eccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcCc
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeccccchhhcccCCCCCCCCCCCCcCC-CcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEec
Q 015517 205 VKNWMTFNEPRVVAALGYDNGFFAPGRCSKAF-GNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLD 283 (405)
Q Consensus 205 V~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~-~~~~~~~~~~~~~~~~hn~llAHA~Av~~~r~~~~~~~~~kIGi~~~ 283 (405)
|++|+|||||++++..||..|.+|||++.... ..|..+++.++.+|++||+++|||+||+++|+.++..|+++|||+++
T Consensus 182 Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~ 261 (497)
T PLN02998 182 VSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVY 261 (497)
T ss_pred CCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEe
Confidence 99999999999999999999999999754211 13665666678999999999999999999999876567899999999
Q ss_pred CceeecCCCCHHHHHHHHHHHHhhcccccchhhcCcCChhhHhHhhccCCCCCHHHHHHhcCCCcEEEecccCCceeeCC
Q 015517 284 FVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYMYDP 363 (405)
Q Consensus 284 ~~~~~P~s~~~~D~~AA~~~~~~~~~~flDpi~~G~YP~~~~~~l~~~lp~ft~ed~~~ikgs~DFiGiNYYts~~v~~~ 363 (405)
..++||.+++|+|++||++++++.++||+||+++|+||+.|++.+++++|+||++|+++|++++||||||||++.+|+..
T Consensus 262 ~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~ 341 (497)
T PLN02998 262 TYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDN 341 (497)
T ss_pred CCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999753
No 3
>PLN02849 beta-glucosidase
Probab=100.00 E-value=1.3e-96 Score=767.47 Aligned_cols=315 Identities=49% Similarity=0.934 Sum_probs=292.5
Q ss_pred CCCCcCCCCCCCchhhhhhhhhcccccCCCCCcCchhhcccccCCcccCCCCCCCCcccccchHHHHHHHHhCCCCEEEe
Q 015517 45 GGLSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRF 124 (405)
Q Consensus 45 ~~~~~~~fP~~FlwG~atsa~Q~EG~~~~~gkg~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~~Rf 124 (405)
..+.+.+||++|+||+|||||||||++++||||+|+||+++|.++ +.++++||||||||+|||+|||+||+++|||
T Consensus 23 ~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~----~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRf 98 (503)
T PLN02849 23 SDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRN----MSNGDIACDGYHKYKEDVKLMVETGLDAFRF 98 (503)
T ss_pred CCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCC----CCCCCccccHHHhHHHHHHHHHHcCCCeEEE
Confidence 446667899999999999999999999999999999999988643 4578899999999999999999999999999
Q ss_pred cccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHcCCC
Q 015517 125 SISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDR 204 (405)
Q Consensus 125 si~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~fgd~ 204 (405)
||+||||+|+|.|++|++||+||+++||+|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.|+++|||+
T Consensus 99 SIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDr 178 (503)
T PLN02849 99 SISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGNH 178 (503)
T ss_pred eccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCc
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeccccchhhcccCCCCCCCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEecC
Q 015517 205 VKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDF 284 (405)
Q Consensus 205 V~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHA~Av~~~r~~~~~~~~~kIGi~~~~ 284 (405)
|++|+|||||++++..||..|.+|||++......|..+++.++.++++||+++|||+||+++|++++..|+++||++++.
T Consensus 179 Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~ 258 (503)
T PLN02849 179 VKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFA 258 (503)
T ss_pred CCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEEC
Confidence 99999999999999999999999999754110135445556789999999999999999999998654568999999999
Q ss_pred ceeecCCCCHHHHHHHHHHHHhhcccccchhhcCcCChhhHhHhhccCCCCCHHHHHHhcCCCcEEEecccCCceeeCC
Q 015517 285 VWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYMYDP 363 (405)
Q Consensus 285 ~~~~P~s~~~~D~~AA~~~~~~~~~~flDpi~~G~YP~~~~~~l~~~lp~ft~ed~~~ikgs~DFiGiNYYts~~v~~~ 363 (405)
.++||.+++|+|++||++++++.++||+||+++|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+..
T Consensus 259 ~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~ 337 (503)
T PLN02849 259 LGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNI 337 (503)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccC
Confidence 9999999999999999999999999999999999999999999998999999999999999999999999999999753
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=1.7e-95 Score=759.21 Aligned_cols=312 Identities=46% Similarity=0.904 Sum_probs=290.8
Q ss_pred CCcCCCCCCCchhhhhhhhhcccccCCCCCcCchhhcccccCCcccCCCCCCCCcccccchHHHHHHHHhCCCCEEEecc
Q 015517 47 LSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSI 126 (405)
Q Consensus 47 ~~~~~fP~~FlwG~atsa~Q~EG~~~~~gkg~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~~Rfsi 126 (405)
+.+.+||++|+||+||||||+||++++||||+|+||++++. .++.++++||||||||+|||+|||+||+++|||||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSI 98 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSI 98 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEec
Confidence 55678999999999999999999999999999999999873 23458899999999999999999999999999999
Q ss_pred cccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHcCCCcc
Q 015517 127 SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVK 206 (405)
Q Consensus 127 ~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~fgd~V~ 206 (405)
+||||+|+|+|.+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.|+++|||+|+
T Consensus 99 sWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 99 SWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred cHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccccchhhcccCCCCCCCCCCCCcCCC-cccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEecCc
Q 015517 207 NWMTFNEPRVVAALGYDNGFFAPGRCSKAFG-NCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFV 285 (405)
Q Consensus 207 ~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~-~~~~~~~~~~~~~~~hn~llAHA~Av~~~r~~~~~~~~~kIGi~~~~~ 285 (405)
+|+|||||++++..||..|.. ||+++.... +|.++++.++.++++||+++|||+||+++|+.++..|+++||++++..
T Consensus 179 ~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~ 257 (504)
T PLN02814 179 LWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAF 257 (504)
T ss_pred EEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCc
Confidence 999999999999999999885 886653111 565556667899999999999999999999987666789999999999
Q ss_pred eeecCCCCHHHHHHHHHHHHhhcccccchhhcCcCChhhHhHhhccCCCCCHHHHHHhcCCCcEEEecccCCceeeCC
Q 015517 286 WYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYMYDP 363 (405)
Q Consensus 286 ~~~P~s~~~~D~~AA~~~~~~~~~~flDpi~~G~YP~~~~~~l~~~lp~ft~ed~~~ikgs~DFiGiNYYts~~v~~~ 363 (405)
++||++++|+|+.||++++++.++||+||+++|+||+.|++.+++++|.||++|+++|++++||||||||++.+|+..
T Consensus 258 ~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~ 335 (504)
T PLN02814 258 GLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNR 335 (504)
T ss_pred eeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999753
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-94 Score=728.51 Aligned_cols=335 Identities=38% Similarity=0.700 Sum_probs=300.2
Q ss_pred CCCCCCCchhhhhhhhhcccccCCCCCcCchhhccccc--CCcccCCCCCCCCcccccchHHHHHHHHhCCCCEEEeccc
Q 015517 50 ESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKK--PGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSIS 127 (405)
Q Consensus 50 ~~fP~~FlwG~atsa~Q~EG~~~~~gkg~s~wD~~~~~--~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~~Rfsi~ 127 (405)
.+||++|+||+||||+|+|||+++||||+|+||+|++. ++++..+..+++||||||||+|||+||||||+++|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 47999999999999999999999999999999999994 5666677889999999999999999999999999999999
Q ss_pred ccccccCCCC-CCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHcCCCcc
Q 015517 128 WSRIFPYGTG-KVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVK 206 (405)
Q Consensus 128 Wsri~P~~~g-~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~fgd~V~ 206 (405)
||||+|++++ ++|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.||+++++|++||++||+||||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 9999999865 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccccchhhcccCCCCCCCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEecCce
Q 015517 207 NWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVW 286 (405)
Q Consensus 207 ~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHA~Av~~~r~~~~~~~~~kIGi~~~~~~ 286 (405)
+|+||||||+++..||..|.+||+..+ .+.++||+||+++|||+||+++|++.+ +.+|||+++..+
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~-----------~~~~~qa~hh~~lA~A~avk~~~~~~~---~~kIG~~~~~~p 227 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVD-----------PKAAYQVAHHMLLAHALAVKAIKKINP---KGKVGIILNLTP 227 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccC-----------HHHHHHHHHHHHHHHHHHHHHHHhhCC---cCceEEEeccCc
Confidence 999999999999999999999998765 268899999999999999999999865 239999999999
Q ss_pred eecCCCCHHHHHHHHHHHHhhcccccchhhcCcCChhhHhHhhcc--CCCCCHHHHHHhc-CCCcEEEecccC-CceeeC
Q 015517 287 YEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR--LPKFTKEEVKMVK-GSIDFVGINQYT-AYYMYD 362 (405)
Q Consensus 287 ~~P~s~~~~D~~AA~~~~~~~~~~flDpi~~G~YP~~~~~~l~~~--lp~ft~ed~~~ik-gs~DFiGiNYYt-s~~v~~ 362 (405)
.||.|++|+|+.||++++++.+++|+||+++|+||.++.+.+++. +|+++++|+++|| +++||||||||+ +.+++.
T Consensus 228 ~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~ 307 (460)
T COG2723 228 AYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAA 307 (460)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeec
Confidence 999999999999999999999999999999999999999999886 7999999999998 689999999999 666655
Q ss_pred CCCC-CCCC-CCCcC-----CCcceeeeccCCccccCCCCCCce
Q 015517 363 PHLK-QPKQ-VGYQQ-----DWNAGFAYEKNGVPIGPRVCLLQL 399 (405)
Q Consensus 363 ~~~~-~~~~-~~~~~-----d~~~~~~~~~~g~~~g~~~~~~wl 399 (405)
.+.. .... ..+.. ...++ .++|+..|.|.+..+..+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~p~~~~s-dwGWeI~P~GL~~~l~~~ 350 (460)
T COG2723 308 EPRYVSGYGPGGFFTSVPNPGLEVS-DWGWEIYPKGLYDILEKL 350 (460)
T ss_pred cCCcCCcccccccccccCCCCCccc-CCCceeChHHHHHHHHHH
Confidence 4421 1111 11111 11233 788888999886654443
No 6
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.3e-90 Score=719.99 Aligned_cols=300 Identities=28% Similarity=0.507 Sum_probs=272.9
Q ss_pred CCCCCCCchhhhhhhhhcccccCCCCCcCchhhcccccCCccc--C----------C--CCCCCCcccccchHHHHHHHH
Q 015517 50 ESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVA--N----------N--ATGDVSVDQYHRYKEDVDIMA 115 (405)
Q Consensus 50 ~~fP~~FlwG~atsa~Q~EG~~~~~gkg~s~wD~~~~~~~~~~--~----------~--~~~~~a~d~y~~y~eDi~l~~ 115 (405)
.+||++|+||+|||||||||++++||||+|+||+|+|.++++. . + .++++||||||||+|||+|||
T Consensus 4 ~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm~ 83 (478)
T PRK09593 4 MPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALFA 83 (478)
T ss_pred ccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHHH
Confidence 4699999999999999999999999999999999988655541 1 1 157899999999999999999
Q ss_pred hCCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHH
Q 015517 116 NLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYA 194 (405)
Q Consensus 116 ~lG~~~~Rfsi~Wsri~P~~~-g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya 194 (405)
+||+++|||||+||||+|+|. |.+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||+|++++++|++||
T Consensus 84 ~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~YA 163 (478)
T PRK09593 84 EMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERLC 163 (478)
T ss_pred HcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHHH
Confidence 999999999999999999974 5799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcceEEeccccchhhcccCC-CCC-CCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015517 195 DFCFKTFGDRVKNWMTFNEPRVVAALGYD-NGF-FAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQ 272 (405)
Q Consensus 195 ~~~~~~fgd~V~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHA~Av~~~r~~~~~ 272 (405)
++||++|||+|++|+|||||++++..||. .|. +|||.. +.++.|+++||+++|||+||++||+..
T Consensus 164 ~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~-----------~~~~~~~a~h~~llAHa~A~~~~~~~~-- 230 (478)
T PRK09593 164 RTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGEN-----------KEQVKYQAAHHELVASAIATKIAHEVD-- 230 (478)
T ss_pred HHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCc-----------hhhhHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 99999999999999999999999988886 444 366532 225689999999999999999999864
Q ss_pred cCCceEEEEecCceeecCCCCHHHHHHHHHHHHhhcccccchhhcCcCChhhHhHhhcc--CCCCCHHHHHHhc-CCCcE
Q 015517 273 KQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR--LPKFTKEEVKMVK-GSIDF 349 (405)
Q Consensus 273 ~~~~kIGi~~~~~~~~P~s~~~~D~~AA~~~~~~~~~~flDpi~~G~YP~~~~~~l~~~--lp~ft~ed~~~ik-gs~DF 349 (405)
|++|||++++..++||.+++++|++||++++ +.++||+||+++|+||+.|++.++++ +|.||++|+++|| +++||
T Consensus 231 -~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DF 308 (478)
T PRK09593 231 -PENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDF 308 (478)
T ss_pred -CCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 4799999999999999999999999999987 45789999999999999999999863 6899999999996 99999
Q ss_pred EEecccCCceeeCCC
Q 015517 350 VGINQYTAYYMYDPH 364 (405)
Q Consensus 350 iGiNYYts~~v~~~~ 364 (405)
||||||+|.+|+..+
T Consensus 309 lGiNyYt~~~v~~~~ 323 (478)
T PRK09593 309 ISFSYYSSRVASGDP 323 (478)
T ss_pred EEEecccCcccccCC
Confidence 999999999998543
No 7
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=1.1e-90 Score=720.15 Aligned_cols=295 Identities=35% Similarity=0.626 Sum_probs=274.8
Q ss_pred CCCCCCCchhhhhhhhhcccccCCCCCcCchhhcccccCCcccCCCCCCCCcccccchHHHHHHHHhCCCCEEEeccccc
Q 015517 50 ESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWS 129 (405)
Q Consensus 50 ~~fP~~FlwG~atsa~Q~EG~~~~~gkg~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~~Rfsi~Ws 129 (405)
.+||++|+||+||||||+||++++||||+|+||++++.++++ ++++||||||||+|||+|||+||+++|||||+||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWs 78 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWS 78 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHh
Confidence 469999999999999999999999999999999999866543 6889999999999999999999999999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHcCCCcceEE
Q 015517 130 RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWM 209 (405)
Q Consensus 130 ri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~fgd~V~~w~ 209 (405)
||+|+|+|.+|++||+||+++||+|+++||+|+|||+|||+|+||+++ |||+|+++++.|++||++||++||| |++|+
T Consensus 79 RI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~ 156 (469)
T PRK13511 79 RIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWT 156 (469)
T ss_pred hcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 999998889999999999999999999999999999999999999986 9999999999999999999999999 99999
Q ss_pred eccccchhhcccCCCCCCCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEecCceeec
Q 015517 210 TFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYEP 289 (405)
Q Consensus 210 t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHA~Av~~~r~~~~~~~~~kIGi~~~~~~~~P 289 (405)
|||||++++..||..|.+|||++.. .++.++++||+++|||+||++||++. |+++||++++..+++|
T Consensus 157 T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P 223 (469)
T PRK13511 157 TFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYP 223 (469)
T ss_pred EccchhhhhhcchhhcccCCCCCcc----------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEee
Confidence 9999999999999999999996431 14689999999999999999999974 4799999999999999
Q ss_pred CC-CCHHHHHHHHHHHHhhcccccchhhcCcCChhhHhHhhc-----c-CCCCCHHHHHHhc---CCCcEEEecccCCce
Q 015517 290 LT-RSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGN-----R-LPKFTKEEVKMVK---GSIDFVGINQYTAYY 359 (405)
Q Consensus 290 ~s-~~~~D~~AA~~~~~~~~~~flDpi~~G~YP~~~~~~l~~-----~-lp~ft~ed~~~ik---gs~DFiGiNYYts~~ 359 (405)
.+ ++|+|++||++++++.++||+||+++|+||+.|++.+++ . .|+||++|+++|| +++||||||||+|.+
T Consensus 224 ~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~ 303 (469)
T PRK13511 224 IDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDW 303 (469)
T ss_pred CCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcce
Confidence 99 899999999999999999999999999999999987742 1 2589999999996 468999999999999
Q ss_pred eeCC
Q 015517 360 MYDP 363 (405)
Q Consensus 360 v~~~ 363 (405)
|+..
T Consensus 304 v~~~ 307 (469)
T PRK13511 304 MRAY 307 (469)
T ss_pred eecC
Confidence 9753
No 8
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.3e-90 Score=719.69 Aligned_cols=297 Identities=31% Similarity=0.575 Sum_probs=267.5
Q ss_pred CCCCCCchhhhhhhhhcccccCCCCCcCchhhccc---c-cCCccc----CCC--CCCCCcccccchHHHHHHHHhCCCC
Q 015517 51 SLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFA---K-KPGIVA----NNA--TGDVSVDQYHRYKEDVDIMANLNFD 120 (405)
Q Consensus 51 ~fP~~FlwG~atsa~Q~EG~~~~~gkg~s~wD~~~---~-~~~~~~----~~~--~~~~a~d~y~~y~eDi~l~~~lG~~ 120 (405)
+||++|+||+|||||||||++++||||+|+||+++ + .++++. ++. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 4 244442 222 5789999999999999999999999
Q ss_pred EEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 015517 121 AYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFK 199 (405)
Q Consensus 121 ~~Rfsi~Wsri~P~~~-g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~ 199 (405)
+|||||+||||+|+|. |.+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||+|++++++|++||++||+
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 9999999999999975 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcceEEeccccchhhcc-----cCC-CCC-CCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015517 200 TFGDRVKNWMTFNEPRVVAAL-----GYD-NGF-FAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQ 272 (405)
Q Consensus 200 ~fgd~V~~w~t~NEp~~~~~~-----gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHA~Av~~~r~~~~~ 272 (405)
+|||+|++|+|||||++++.. ||. .|. +|||.. ..+..|+++||+++|||+||+++|++.+
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~-----------~~~~~~~~~h~~llAha~A~~~~~~~~~- 230 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED-----------REQIMYQAAHYELVASALAVKTGHEINP- 230 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 999999999999999998776 443 333 255431 1245799999999999999999999754
Q ss_pred cCCceEEEEecCceeecCCCCHHHHHHHHHHHHhhcccccchhhcCcCChhhHhHhhcc--CCCCCHHHHHHh-cCCCcE
Q 015517 273 KQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR--LPKFTKEEVKMV-KGSIDF 349 (405)
Q Consensus 273 ~~~~kIGi~~~~~~~~P~s~~~~D~~AA~~~~~~~~~~flDpi~~G~YP~~~~~~l~~~--lp~ft~ed~~~i-kgs~DF 349 (405)
+++||++++..++||.+++|+|++||++++.+ +.||+||+++|+||+.|++.++++ .|+||++|+++| ++++||
T Consensus 231 --~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DF 307 (476)
T PRK09589 231 --DFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDY 307 (476)
T ss_pred --CCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 68999999999999999999999999998855 679999999999999999999875 489999999999 599999
Q ss_pred EEecccCCceeeC
Q 015517 350 VGINQYTAYYMYD 362 (405)
Q Consensus 350 iGiNYYts~~v~~ 362 (405)
||||||+|.+|+.
T Consensus 308 lGiNyYts~~v~~ 320 (476)
T PRK09589 308 IGFSYYMSFATKF 320 (476)
T ss_pred EEEecccCccccc
Confidence 9999999999975
No 9
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=2.3e-90 Score=716.84 Aligned_cols=293 Identities=35% Similarity=0.635 Sum_probs=273.7
Q ss_pred CCCCCCchhhhhhhhhcccccCCCCCcCchhhcccccCCcccCCCCCCCCcccccchHHHHHHHHhCCCCEEEecccccc
Q 015517 51 SLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSR 130 (405)
Q Consensus 51 ~fP~~FlwG~atsa~Q~EG~~~~~gkg~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~~Rfsi~Wsr 130 (405)
+||++|+||+|||||||||+++++|||+|+||++.+.+++ .++++||||||||+|||+|||+||+++|||||+|||
T Consensus 3 ~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsR 78 (467)
T TIGR01233 3 TLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSR 78 (467)
T ss_pred CCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhh
Confidence 5999999999999999999999999999999999876543 257899999999999999999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHcCCCcceEEe
Q 015517 131 IFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMT 210 (405)
Q Consensus 131 i~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t 210 (405)
|+|+|+|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||+|+++++.|++||++||++||| |++|+|
T Consensus 79 I~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT 156 (467)
T TIGR01233 79 IFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTT 156 (467)
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEE
Confidence 99998889999999999999999999999999999999999999986 9999999999999999999999998 999999
Q ss_pred ccccchhhcccCCCCCCCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEecCceeecC
Q 015517 211 FNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYEPL 290 (405)
Q Consensus 211 ~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHA~Av~~~r~~~~~~~~~kIGi~~~~~~~~P~ 290 (405)
||||++++..||..|.+|||.+.. .++.++++||+++|||+||+++|++. |+++|||+++..++||+
T Consensus 157 ~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~ 223 (467)
T TIGR01233 157 FNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYPY 223 (467)
T ss_pred ecchhhhhhccchhcccCCCccch----------hHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEEC
Confidence 999999999999999999996421 14689999999999999999999974 47999999999999999
Q ss_pred C-CCHHHHHHHHHHHHhhcccccchhhcCcCChhhHhHhhc----c--CCCCCHHHHHHh---cCCCcEEEecccCCcee
Q 015517 291 T-RSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGN----R--LPKFTKEEVKMV---KGSIDFVGINQYTAYYM 360 (405)
Q Consensus 291 s-~~~~D~~AA~~~~~~~~~~flDpi~~G~YP~~~~~~l~~----~--lp~ft~ed~~~i---kgs~DFiGiNYYts~~v 360 (405)
+ ++|+|++||++++++.++||+||+++|+||+.|++.+++ + .|.+|++|+++| ++++||||||||+|.+|
T Consensus 224 ~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v 303 (467)
T TIGR01233 224 DPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWM 303 (467)
T ss_pred CCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceee
Confidence 8 899999999999999999999999999999999998763 2 378999999999 58999999999999999
Q ss_pred eC
Q 015517 361 YD 362 (405)
Q Consensus 361 ~~ 362 (405)
+.
T Consensus 304 ~~ 305 (467)
T TIGR01233 304 QA 305 (467)
T ss_pred cc
Confidence 75
No 10
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=5.4e-91 Score=721.48 Aligned_cols=301 Identities=53% Similarity=0.983 Sum_probs=278.0
Q ss_pred CCCCCCCchhhhhhhhhcccccCCCCCcCchhhcccccCCcccCCCCCCCCcccccchHHHHHHHHhCCCCEEEeccccc
Q 015517 50 ESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWS 129 (405)
Q Consensus 50 ~~fP~~FlwG~atsa~Q~EG~~~~~gkg~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~~Rfsi~Ws 129 (405)
.+||++|+||+|||||||||++++||||+|+||.|++.++++.++.++++||||||||+|||+|||+||+++|||||+|+
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~ 82 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWS 82 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HH
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchh
Confidence 57999999999999999999999999999999999999888888888999999999999999999999999999999999
Q ss_pred ccccCC-CCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHcCCCcceE
Q 015517 130 RIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNW 208 (405)
Q Consensus 130 ri~P~~-~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~fgd~V~~w 208 (405)
||+|+| .|.+|++||++|+++|++|+++||+|+|||+|||+|+||++ +|||+|+++++.|++||++|+++|||+|++|
T Consensus 83 Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w 161 (455)
T PF00232_consen 83 RIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKYW 161 (455)
T ss_dssp HHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEE
T ss_pred heeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcceE
Confidence 999998 79999999999999999999999999999999999999998 7999999999999999999999999999999
Q ss_pred EeccccchhhcccCCCCCCCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEecCceee
Q 015517 209 MTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYE 288 (405)
Q Consensus 209 ~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHA~Av~~~r~~~~~~~~~kIGi~~~~~~~~ 288 (405)
+|||||++++..||..|.+|||..+ .++.++++||+++|||+||+++|++++ +++|||+++..+++
T Consensus 162 ~T~NEp~~~~~~~y~~g~~~p~~~~-----------~~~~~~~~h~~l~AHa~A~~~~~~~~~---~~~IGi~~~~~~~~ 227 (455)
T PF00232_consen 162 ITFNEPNVFALLGYLYGGFPPGRDS-----------LKAFYQAAHNLLLAHAKAVKAIKEKYP---DGKIGIALNFSPFY 227 (455)
T ss_dssp EEEETHHHHHHHHHTSSSSTTCSST-----------HHHHHHHHHHHHHHHHHHHHHHHHHTC---TSEEEEEEEEEEEE
T ss_pred Eeccccceeeccccccccccccccc-----------cchhhHHHhhHHHHHHHHHHHHhhccc---ceEEeccccccccC
Confidence 9999999999999999999999554 368899999999999999999999874 79999999999999
Q ss_pred cCCCCHHHH-HHHHHHHHhhcccccchhhcCcCChhhHhHhhcc--CCCCCHHHHHHhcCCCcEEEecccCCceeeCCCC
Q 015517 289 PLTRSKADN-YAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR--LPKFTKEEVKMVKGSIDFVGINQYTAYYMYDPHL 365 (405)
Q Consensus 289 P~s~~~~D~-~AA~~~~~~~~~~flDpi~~G~YP~~~~~~l~~~--lp~ft~ed~~~ikgs~DFiGiNYYts~~v~~~~~ 365 (405)
|.+++++|+ +||++.++++++||+||+++|+||..|+..++++ +|.||++|++.||+++||||||||++.+|+..+.
T Consensus 228 P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~ 307 (455)
T PF00232_consen 228 PLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPN 307 (455)
T ss_dssp ESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSS
T ss_pred CCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCcc
Confidence 999988776 8999999999999999999999999999999998 9999999999999999999999999999998763
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=8e-90 Score=713.51 Aligned_cols=301 Identities=30% Similarity=0.528 Sum_probs=270.3
Q ss_pred CcCCCCCCCchhhhhhhhhcccccCCCCCcCchhhccc---c-cCCccc----CC--CCCCCCcccccchHHHHHHHHhC
Q 015517 48 SRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFA---K-KPGIVA----NN--ATGDVSVDQYHRYKEDVDIMANL 117 (405)
Q Consensus 48 ~~~~fP~~FlwG~atsa~Q~EG~~~~~gkg~s~wD~~~---~-~~~~~~----~~--~~~~~a~d~y~~y~eDi~l~~~l 117 (405)
++.+||++|+||+||||||+||++++||||+|+||+++ + .++++. ++ .++++||||||||+|||+|||+|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 45679999999999999999999999999999999998 4 244441 22 26789999999999999999999
Q ss_pred CCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHH
Q 015517 118 NFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADF 196 (405)
Q Consensus 118 G~~~~Rfsi~Wsri~P~~~-g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~ 196 (405)
|+++|||||+|+||+|+|. +.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||++
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 9999999999999999974 569999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcceEEeccccchh-----hcccCCC-CCC-CCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 015517 197 CFKTFGDRVKNWMTFNEPRVV-----AALGYDN-GFF-APGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQK 269 (405)
Q Consensus 197 ~~~~fgd~V~~w~t~NEp~~~-----~~~gy~~-g~~-~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHA~Av~~~r~~ 269 (405)
||++|||+|++|+|||||+++ +..||.. |.+ ||+.. +.++.|+++||+++|||+||+++|++
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~-----------~~~~~~~~~h~~llAHa~A~~~~~~~ 230 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN-----------PEETMYQVLHHQFVASALAVKAARRI 230 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987 6678874 665 44321 12568999999999999999999997
Q ss_pred hcccCCceEEEEecCceeecCCCCHHHHHHHHHHHHhhcccccchhhcCcCChhhHhHhhccC--CCCCHHHHHHh-cCC
Q 015517 270 YEQKQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRL--PKFTKEEVKMV-KGS 346 (405)
Q Consensus 270 ~~~~~~~kIGi~~~~~~~~P~s~~~~D~~AA~~~~~~~~~~flDpi~~G~YP~~~~~~l~~~l--p~ft~ed~~~i-kgs 346 (405)
.+ +++||++++..++||.+++|+|++||++++. ...||+||+++|+||+.|++.++++. |+++++|+++| +++
T Consensus 231 ~~---~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~ 306 (477)
T PRK15014 231 NP---EMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGT 306 (477)
T ss_pred CC---CCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Confidence 54 7999999999999999999999999998773 23459999999999999999998864 78999999999 599
Q ss_pred CcEEEecccCCceeeCC
Q 015517 347 IDFVGINQYTAYYMYDP 363 (405)
Q Consensus 347 ~DFiGiNYYts~~v~~~ 363 (405)
+||||||||+|.+|+..
T Consensus 307 ~DFlGiNyYt~~~v~~~ 323 (477)
T PRK15014 307 CDYLGFSYYMTNAVKAE 323 (477)
T ss_pred CCEEEEcceeCeeeccC
Confidence 99999999999999753
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=3.7e-89 Score=707.58 Aligned_cols=298 Identities=29% Similarity=0.527 Sum_probs=274.4
Q ss_pred CCCCCCchhhhhhhhhcccccCCCCCcCchhhcccccCCccc------------CCC--CCCCCcccccchHHHHHHHHh
Q 015517 51 SLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVA------------NNA--TGDVSVDQYHRYKEDVDIMAN 116 (405)
Q Consensus 51 ~fP~~FlwG~atsa~Q~EG~~~~~gkg~s~wD~~~~~~~~~~------------~~~--~~~~a~d~y~~y~eDi~l~~~ 116 (405)
+||++|+||+||||||+||++++||||+|+||++++.++++. ++. ++++||||||||+|||+||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999998666542 111 578999999999999999999
Q ss_pred CCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHH
Q 015517 117 LNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYAD 195 (405)
Q Consensus 117 lG~~~~Rfsi~Wsri~P~~~-g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~ 195 (405)
||+++|||||+|+||+|+++ +.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999974 56899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcceEEeccccchhhcccCC-CCC-CCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccc
Q 015517 196 FCFKTFGDRVKNWMTFNEPRVVAALGYD-NGF-FAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQK 273 (405)
Q Consensus 196 ~~~~~fgd~V~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHA~Av~~~r~~~~~~ 273 (405)
+|+++|||+|++|+|||||++++..||. .|. +|||... .++.|+++||+++|||+||+++|++.+
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~~~-- 229 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQAAHHELVASALATKIAHEVNP-- 229 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 9999999999999999999999999996 564 4786422 246899999999999999999999754
Q ss_pred CCceEEEEecCceeecCCCCHHHHHHHHHHHHhhcccccchhhcCcCChhhHhHhhcc--CCCCCHHHHHHhcCCCcEEE
Q 015517 274 QKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR--LPKFTKEEVKMVKGSIDFVG 351 (405)
Q Consensus 274 ~~~kIGi~~~~~~~~P~s~~~~D~~AA~~~~~~~~~~flDpi~~G~YP~~~~~~l~~~--lp~ft~ed~~~ikgs~DFiG 351 (405)
+++||++++..++||.+++|+|++||++++ +.++||+||+++|+||+.|++.++++ +|+||++|+++|++++||||
T Consensus 230 -~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlG 307 (474)
T PRK09852 230 -QNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVS 307 (474)
T ss_pred -CCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEE
Confidence 789999999999999999999999999877 45889999999999999999999875 79999999999999999999
Q ss_pred ecccCCceeeCC
Q 015517 352 INQYTAYYMYDP 363 (405)
Q Consensus 352 iNYYts~~v~~~ 363 (405)
||||+|.+|+..
T Consensus 308 iNyYt~~~v~~~ 319 (474)
T PRK09852 308 FSYYASRCASAE 319 (474)
T ss_pred EccccCeecccC
Confidence 999999999753
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=8.3e-88 Score=691.66 Aligned_cols=296 Identities=44% Similarity=0.823 Sum_probs=280.9
Q ss_pred CCCCCchhhhhhhhhcccccCCCCCcCchhhcccccCCcccCCCCCCCCcccccchHHHHHHHHhCCCCEEEeccccccc
Q 015517 52 LPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRI 131 (405)
Q Consensus 52 fP~~FlwG~atsa~Q~EG~~~~~gkg~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri 131 (405)
||++|+||+||||||+||+++++|||+|+||++.+.++++.++.++++||||||||+|||++||+||+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999998777776666889999999999999999999999999999999999
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHcCCCcceEEec
Q 015517 132 FPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTF 211 (405)
Q Consensus 132 ~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~ 211 (405)
+|+|+|.+|+++|++|+++|++|+++||+|+|||||||+|+||+++ |||.|+++++.|++||+.|+++|||+|++|+|+
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9997789999999999999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred cccchhhcccCCCCCCCCCCCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEecCceeecCC
Q 015517 212 NEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYEPLT 291 (405)
Q Consensus 212 NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHA~Av~~~r~~~~~~~~~kIGi~~~~~~~~P~s 291 (405)
|||++++..||..|.+||+.++. ++.++++||+++|||+||+++|++.+ ++|||++++..++||.+
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~~-----------~~~~~~~hnll~Aha~A~~~~~~~~~---~~~IGi~~~~~~~~P~~ 225 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRDL-----------RAALQAAHHLLLAHGLAVQALRANGP---GAQVGIVLNLTPVYPAS 225 (427)
T ss_pred cCcceecccchhhccCCCCCccH-----------HHHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEEEEeCCeeeeCC
Confidence 99999999999999999985431 45799999999999999999999864 79999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcccccchhhcCcCChhhHhHhhccCCCCCHHHHHHhcCCCcEEEecccCCceeeCC
Q 015517 292 RSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYMYDP 363 (405)
Q Consensus 292 ~~~~D~~AA~~~~~~~~~~flDpi~~G~YP~~~~~~l~~~lp~ft~ed~~~ikgs~DFiGiNYYts~~v~~~ 363 (405)
++|+|+.||++++++.++||+||+++|+||..|++.++. +|.||++|+++|++++||||||||++.+|+..
T Consensus 226 ~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~-~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~ 296 (427)
T TIGR03356 226 DSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLGD-APFVQDGDLETIAQPLDFLGINYYTRSVVAAD 296 (427)
T ss_pred CCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhcc-CCCCCHHHHHHhcCCCCEEEEeccccceeccC
Confidence 999999999999999999999999999999999999974 69999999999999999999999999999864
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.33 E-value=3e-12 Score=130.02 Aligned_cols=109 Identities=23% Similarity=0.390 Sum_probs=87.3
Q ss_pred cchHHHHHHHHhCCCCEEEe-cccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhc-----
Q 015517 105 HRYKEDVDIMANLNFDAYRF-SISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKY----- 178 (405)
Q Consensus 105 ~~y~eDi~l~~~lG~~~~Rf-si~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~y----- 178 (405)
..+++|+++|+++|+|++|+ .++|++|||++ |++|++ .+|++|+.+.++||++++.+.+...|.||.++|
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e-G~ydF~---~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~ 85 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE-GQYDFS---WLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILP 85 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT-TB---H---HHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC-CeeecH---HHHHHHHHHHhccCeEEEEecccccccchhhhcccccc
Confidence 46899999999999999996 57999999998 999984 479999999999999999999999999998764
Q ss_pred ----------CC-----CCChHHHHHHHHHHHHHHHHcCCC--cceEEeccccchh
Q 015517 179 ----------NG-----LLSKRVVKDFADYADFCFKTFGDR--VKNWMTFNEPRVV 217 (405)
Q Consensus 179 ----------gg-----w~~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEp~~~ 217 (405)
|+ ..++...+.+.++++.++++|++. |-.|.+.|||...
T Consensus 86 ~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 86 VDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 11 124567888888999999999985 7789999999754
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.28 E-value=9.4e-12 Score=119.65 Aligned_cols=109 Identities=19% Similarity=0.268 Sum_probs=90.2
Q ss_pred chHHHHHHHHhCCCCEEEecccccccc-cCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCC-CC
Q 015517 106 RYKEDVDIMANLNFDAYRFSISWSRIF-PYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGL-LS 183 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~-P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw-~~ 183 (405)
..++|++.|+++|+|++|+.|.|..++ |.+.+.++...++.++++|+.+.++||.++|++|+. |.|.... +++ ..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~~ 98 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGNN 98 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTTH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccccc
Confidence 579999999999999999999998888 555456999999999999999999999999999874 6663322 223 33
Q ss_pred hHHHHHHHHHHHHHHHHcCC--CcceEEeccccchh
Q 015517 184 KRVVKDFADYADFCFKTFGD--RVKNWMTFNEPRVV 217 (405)
Q Consensus 184 ~~~~~~F~~ya~~~~~~fgd--~V~~w~t~NEp~~~ 217 (405)
....+.|.++++.++++|++ .|..|.++|||...
T Consensus 99 ~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred hhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 44678899999999999955 57799999999864
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.71 E-value=4.3e-08 Score=94.59 Aligned_cols=83 Identities=16% Similarity=0.381 Sum_probs=71.8
Q ss_pred ccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEE--EEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHcCC
Q 015517 126 ISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITP--YANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGD 203 (405)
Q Consensus 126 i~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p--~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~fgd 203 (405)
..|++++|.+ |.+|++. .+.+++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||++
T Consensus 1 ~kW~~~ep~~-G~~n~~~---~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~g 72 (254)
T smart00633 1 MKWDSTEPSR-GQFNFSG---ADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYKG 72 (254)
T ss_pred CCcccccCCC-CccChHH---HHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhCC
Confidence 3699999998 9999855 688999999999995 4556788899998742 2 567789999999999999999
Q ss_pred CcceEEeccccch
Q 015517 204 RVKNWMTFNEPRV 216 (405)
Q Consensus 204 ~V~~w~t~NEp~~ 216 (405)
+|..|.++|||..
T Consensus 73 ~i~~wdV~NE~~~ 85 (254)
T smart00633 73 KIYAWDVVNEALH 85 (254)
T ss_pred cceEEEEeeeccc
Confidence 9999999999985
No 17
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.40 E-value=8.5e-07 Score=95.69 Aligned_cols=107 Identities=21% Similarity=0.349 Sum_probs=85.6
Q ss_pred chHHHHHHHHhCCCCEEEec-ccccccccCCCCCCChhHHHHHHHH-HHHHHHCCCEEEEEc-CCCCCcHHHHHhc----
Q 015517 106 RYKEDVDIMANLNFDAYRFS-ISWSRIFPYGTGKVNWKGVAYYNQL-INYLLKRGITPYANL-YHYDLPEALEKKY---- 178 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfs-i~Wsri~P~~~g~~n~~~l~~y~~~-id~l~~~gI~p~vtL-~H~d~P~~l~~~y---- 178 (405)
-+++|++.||++|+|++|.+ ++|++++|+. |++|+. +.|.. ++.+.+.||.+++.- .....|.|+.++|
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e-G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL 106 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEE-GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEIL 106 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccc-cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhhe
Confidence 37899999999999999995 5999999998 999997 56666 999999999999998 7788999999876
Q ss_pred -----------CCCCChHHH-HHHHHHHHH----HHHH-cCCC--cceEEeccccch
Q 015517 179 -----------NGLLSKRVV-KDFADYADF----CFKT-FGDR--VKNWMTFNEPRV 216 (405)
Q Consensus 179 -----------ggw~~~~~~-~~F~~ya~~----~~~~-fgd~--V~~w~t~NEp~~ 216 (405)
++|.+-... ..|..|++. +.+| ||+. |-.|.+-||=..
T Consensus 107 ~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~ 163 (673)
T COG1874 107 AVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGG 163 (673)
T ss_pred EecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCC
Confidence 445332222 236666655 7888 8875 667999997544
No 18
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.23 E-value=4.5e-06 Score=86.10 Aligned_cols=109 Identities=21% Similarity=0.263 Sum_probs=81.4
Q ss_pred HHHHHHHHhCCCCEEEecccccccccCC--C-CCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHh--c-CCC
Q 015517 108 KEDVDIMANLNFDAYRFSISWSRIFPYG--T-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKK--Y-NGL 181 (405)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~--~-g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~--y-ggw 181 (405)
++|+..||+.|+|++|+.|.|..+.+.. . ...+...+++.+++|+..++.||.++++||+..-++--.+. | +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999866655542 1 22324455699999999999999999999986522211111 0 112
Q ss_pred C-ChHHHHHHHHHHHHHHHHcCCC--cceEEeccccch
Q 015517 182 L-SKRVVKDFADYADFCFKTFGDR--VKNWMTFNEPRV 216 (405)
Q Consensus 182 ~-~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEp~~ 216 (405)
. ..+.++++.+-++.++.||++. |-...++|||+.
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 3557899999999999999984 445789999985
No 19
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.89 E-value=0.00028 Score=70.83 Aligned_cols=142 Identities=17% Similarity=0.213 Sum_probs=85.9
Q ss_pred HHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCC---cHHHHHhcCCCCC-
Q 015517 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL---PEALEKKYNGLLS- 183 (405)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~---P~~l~~~yggw~~- 183 (405)
++=+++||+.|+|++|+-+ | +-|...|.-| ++.-..+..+.+++||+.+|++|-=|. |.- +.+-..|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~-Q~~P~aW~~~ 99 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGK-QNKPAAWANL 99 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB--B--TTCTSS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCC-CCCCccCCCC
Confidence 4457999999999999977 4 3344224444 567789999999999999999973221 210 011156877
Q ss_pred --hHHHHHHHHHHHHHHHHcCC---CcceEEeccccchhhcccCCCCCCCCCCCCcCCCcccCCCCCChHHHHHHHHHHH
Q 015517 184 --KRVVKDFADYADFCFKTFGD---RVKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILS 258 (405)
Q Consensus 184 --~~~~~~F~~ya~~~~~~fgd---~V~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llA 258 (405)
.+..+.-.+|.+.+.+.+++ .++.+.+=||.+.-.. +|.|.. .-+.-+-.++.|
T Consensus 100 ~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~--------------~~~~~~a~ll~a 158 (332)
T PF07745_consen 100 SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKP--------------SNWDNLAKLLNA 158 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCT--------------T-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCc--------------cCHHHHHHHHHH
Confidence 56777888888888777654 5788889999874322 333321 124444556666
Q ss_pred HHHHHHHHHHHhcccCCceEEEEec
Q 015517 259 HAAAVQRYRQKYEQKQKGRIGILLD 283 (405)
Q Consensus 259 HA~Av~~~r~~~~~~~~~kIGi~~~ 283 (405)
-.+|| |+..+ +.+|-+.+.
T Consensus 159 g~~AV---r~~~p---~~kV~lH~~ 177 (332)
T PF07745_consen 159 GIKAV---REVDP---NIKVMLHLA 177 (332)
T ss_dssp HHHHH---HTHSS---TSEEEEEES
T ss_pred HHHHH---HhcCC---CCcEEEEEC
Confidence 55554 44544 577766555
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=97.80 E-value=7.7e-05 Score=78.69 Aligned_cols=106 Identities=24% Similarity=0.473 Sum_probs=62.8
Q ss_pred hHHHHHHHH-hCCCCEEEecc----ccccccc-CCCC--CCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHh-
Q 015517 107 YKEDVDIMA-NLNFDAYRFSI----SWSRIFP-YGTG--KVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKK- 177 (405)
Q Consensus 107 y~eDi~l~~-~lG~~~~Rfsi----~Wsri~P-~~~g--~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~- 177 (405)
+++.+..++ ++|++.+||-= +..-... ++.| .+|+ .+.|+++|.|+++||+|+|.|.. +|.++...
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~~ 115 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALASGY 115 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS-
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhcCCC
Confidence 566666665 99999999862 2222222 2222 2787 56799999999999999999974 67766432
Q ss_pred -----cCCCC-ChHHHHHHHHHHHHHHHHc----CC-Ccc--eEEeccccchh
Q 015517 178 -----YNGLL-SKRVVKDFADYADFCFKTF----GD-RVK--NWMTFNEPRVV 217 (405)
Q Consensus 178 -----yggw~-~~~~~~~F~~ya~~~~~~f----gd-~V~--~w~t~NEp~~~ 217 (405)
+.|+. .++..+.+.++++.+++|+ |. .|. +|.+||||++.
T Consensus 116 ~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~ 168 (486)
T PF01229_consen 116 QTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK 168 (486)
T ss_dssp -EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST
T ss_pred CccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc
Confidence 12222 3566788888876666654 42 365 56899999974
No 21
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.46 E-value=0.00036 Score=69.84 Aligned_cols=109 Identities=12% Similarity=0.128 Sum_probs=71.9
Q ss_pred chHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcC--------CCCCcHHHHHh
Q 015517 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY--------HYDLPEALEKK 177 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~--------H~d~P~~l~~~ 177 (405)
.|++-++.||++|+|++-+-|.|.--||.+ |++|++|..=.+.+|+.++++|+.+++-.= .-.+|.||..+
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~-g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~ 103 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE-GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRK 103 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT-TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGS
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC-CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhcc
Confidence 478889999999999999999999999998 999999988899999999999999887532 13489999876
Q ss_pred cCCC---CChHHHHHHHHHHHHHHHHcCC-------CcceEEeccccc
Q 015517 178 YNGL---LSKRVVKDFADYADFCFKTFGD-------RVKNWMTFNEPR 215 (405)
Q Consensus 178 yggw---~~~~~~~~F~~ya~~~~~~fgd-------~V~~w~t~NEp~ 215 (405)
.+.. .++...+.-.+|.+.+++...+ -|-.-++=||..
T Consensus 104 ~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 104 PDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp TTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 3332 2344555566666666555443 233455666643
No 22
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.25 E-value=0.0013 Score=65.92 Aligned_cols=88 Identities=16% Similarity=0.322 Sum_probs=67.6
Q ss_pred cccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEE--EcCCCCCcHHHHHhcCCCCChH---HHHHHHHHHHHHHH
Q 015517 125 SISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYA--NLYHYDLPEALEKKYNGLLSKR---VVKDFADYADFCFK 199 (405)
Q Consensus 125 si~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~v--tL~H~d~P~~l~~~yggw~~~~---~~~~F~~ya~~~~~ 199 (405)
...|..++|.. |.+|++. .+++++-++++||++-- -+.|--.|.|+... .-+...+ ..+...+|.+.+++
T Consensus 43 ~~Kw~~~e~~~-g~~~~~~---~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~ 117 (320)
T PF00331_consen 43 EMKWGSIEPEP-GRFNFES---ADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVT 117 (320)
T ss_dssp TTSHHHHESBT-TBEE-HH---HHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcCCC-CccCccc---hhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHh
Confidence 47899999998 9999855 79999999999999874 34466799999863 2233333 78889999999999
Q ss_pred HcCC--CcceEEeccccchh
Q 015517 200 TFGD--RVKNWMTFNEPRVV 217 (405)
Q Consensus 200 ~fgd--~V~~w~t~NEp~~~ 217 (405)
||++ +|..|-+.|||...
T Consensus 118 ~y~~~g~i~~WDVvNE~i~~ 137 (320)
T PF00331_consen 118 RYKDKGRIYAWDVVNEAIDD 137 (320)
T ss_dssp HTTTTTTESEEEEEES-B-T
T ss_pred HhccccceEEEEEeeecccC
Confidence 9994 89999999999643
No 23
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.16 E-value=0.00052 Score=70.01 Aligned_cols=105 Identities=17% Similarity=0.356 Sum_probs=78.5
Q ss_pred ccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcC-C-----------CCCc
Q 015517 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-H-----------YDLP 171 (405)
Q Consensus 104 y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~-H-----------~d~P 171 (405)
..-.+.+++.+|.+|++.+-+.+-|--+|..+++++|+++ |+++++.+++.|++..+.|. | .-+|
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 3468999999999999999999999999999779999966 99999999999999888663 3 3689
Q ss_pred HHHHHh-----------cCC--------CCChHHHHHHHHHHHHHHHHcCCCcceEEecccc
Q 015517 172 EALEKK-----------YNG--------LLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEP 214 (405)
Q Consensus 172 ~~l~~~-----------ygg--------w~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEp 214 (405)
.|+.++ .|. |....+++.|.+|-+-+.++|.+.. -|+-|.
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I 150 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEI 150 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEE
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEE
Confidence 998753 122 3344459999999999999987654 344443
No 24
>PLN02803 beta-amylase
Probab=96.98 E-value=0.0031 Score=66.14 Aligned_cols=107 Identities=21% Similarity=0.377 Sum_probs=82.5
Q ss_pred cchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcC-C-----------CCCcH
Q 015517 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-H-----------YDLPE 172 (405)
Q Consensus 105 ~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~-H-----------~d~P~ 172 (405)
.-.+..++.+|.+|++.+-+.+-|--+|.++++++|++| |+++++.+++.|++..+.|. | .-+|+
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 183 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPP 183 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 447889999999999999999999999999889999966 99999999999999777664 4 25999
Q ss_pred HHHHh--------c---CC----------------CCChHHHHHHHHHHHHHHHHcCCCcceEEeccccch
Q 015517 173 ALEKK--------Y---NG----------------LLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (405)
Q Consensus 173 ~l~~~--------y---gg----------------w~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEp~~ 216 (405)
|+.+. | .| +..+.-++.|.+|-+-+..+|.+... -|+.|..+
T Consensus 184 WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 184 WVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred HHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 98763 1 11 12333568888888888888776543 34555433
No 25
>PLN00197 beta-amylase; Provisional
Probab=96.96 E-value=0.0033 Score=66.10 Aligned_cols=107 Identities=21% Similarity=0.374 Sum_probs=82.7
Q ss_pred cchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcC-C-----------CCCcH
Q 015517 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-H-----------YDLPE 172 (405)
Q Consensus 105 ~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~-H-----------~d~P~ 172 (405)
.-.+..++.+|.+|++.+-+.+-|--+|+++++++|++| |+++++.+++.|++..+.|. | .-+|+
T Consensus 127 ~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~ 203 (573)
T PLN00197 127 KAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPK 203 (573)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 347889999999999999999999999998889999966 99999999999999777764 4 25999
Q ss_pred HHHHh--------c---CCC----------------CChHHHHHHHHHHHHHHHHcCCCcceEEeccccch
Q 015517 173 ALEKK--------Y---NGL----------------LSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (405)
Q Consensus 173 ~l~~~--------y---ggw----------------~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEp~~ 216 (405)
|+.+. | .|- ..|.-++.|.+|-+-+-.+|.+... -|+.|..+
T Consensus 204 WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 204 WVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred HHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 98763 1 121 1233478899999888888777543 24555443
No 26
>PLN02161 beta-amylase
Probab=96.90 E-value=0.004 Score=64.98 Aligned_cols=111 Identities=14% Similarity=0.298 Sum_probs=85.9
Q ss_pred cccccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcC-CC-----------
Q 015517 101 VDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-HY----------- 168 (405)
Q Consensus 101 ~d~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~-H~----------- 168 (405)
.....-.+..++.+|.+|++.+-+.+-|--+|.++++++|+++ |+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 4566678899999999999999999999999998889999966 99999999999999777664 42
Q ss_pred CCcHHHHHh--------c---CC----------------CCChHHHHHHHHHHHHHHHHcCCCcceEEeccccch
Q 015517 169 DLPEALEKK--------Y---NG----------------LLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (405)
Q Consensus 169 d~P~~l~~~--------y---gg----------------w~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEp~~ 216 (405)
-+|+|+.+. | .| +..+.-++.|.+|-+-+..+|.+... -|+.|..+
T Consensus 190 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred cCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 489998753 1 12 12233568899998888888877543 24555443
No 27
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.86 E-value=0.0065 Score=59.80 Aligned_cols=92 Identities=12% Similarity=0.151 Sum_probs=62.6
Q ss_pred ccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcC----
Q 015517 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYN---- 179 (405)
Q Consensus 104 y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yg---- 179 (405)
...+++|+++||++|+|++|++. .|.. .++++.|-+.||-++.-+.....-.|- ..+
T Consensus 35 ~~~~~~d~~l~k~~G~N~iR~~h-----~p~~------------~~~~~~cD~~GilV~~e~~~~~~~~~~--~~~~~~~ 95 (298)
T PF02836_consen 35 DEAMERDLELMKEMGFNAIRTHH-----YPPS------------PRFYDLCDELGILVWQEIPLEGHGSWQ--DFGNCNY 95 (298)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETT-----S--S------------HHHHHHHHHHT-EEEEE-S-BSCTSSS--STSCTSC
T ss_pred HHHHHHHHHHHHhcCcceEEccc-----ccCc------------HHHHHHHhhcCCEEEEeccccccCccc--cCCcccc
Confidence 46789999999999999999962 2222 567788999999999776431111110 001
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCC--cceEEecccc
Q 015517 180 GLLSKRVVKDFADYADFCFKTFGDR--VKNWMTFNEP 214 (405)
Q Consensus 180 gw~~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEp 214 (405)
--.+++..+.+.+-++.+++++.+. |-.|.+.||+
T Consensus 96 ~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 96 DADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 0125678888888899999999986 6789999998
No 28
>PLN03059 beta-galactosidase; Provisional
Probab=96.82 E-value=0.0057 Score=67.82 Aligned_cols=108 Identities=10% Similarity=0.086 Sum_probs=85.0
Q ss_pred cchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcC--------CCCCcHHHHH
Q 015517 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY--------HYDLPEALEK 176 (405)
Q Consensus 105 ~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~--------H~d~P~~l~~ 176 (405)
..|++=++.||++|+|++-.=|-|.--||.+ |++|++|..=..++|+.+.+.|+-+++-.- .-++|.||.+
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~-G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~ 137 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP-GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKY 137 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCC-CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhc
Confidence 3478889999999999999999999999997 999999999999999999999999888542 3578999975
Q ss_pred hcCCCC----ChHHHHHHHHHHHHHHHHcC---------CCcceEEecccc
Q 015517 177 KYNGLL----SKRVVKDFADYADFCFKTFG---------DRVKNWMTFNEP 214 (405)
Q Consensus 177 ~yggw~----~~~~~~~F~~ya~~~~~~fg---------d~V~~w~t~NEp 214 (405)
. .|.. ++...++-.+|.+.+++..+ +-|-...+=||=
T Consensus 138 ~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEY 187 (840)
T PLN03059 138 V-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEY 187 (840)
T ss_pred C-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccc
Confidence 4 4532 45566666677777766663 224455677774
No 29
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.73 E-value=0.014 Score=57.60 Aligned_cols=102 Identities=12% Similarity=0.146 Sum_probs=63.9
Q ss_pred HHHHHHHHhCCCCEEEecc--ccccc--------cc--CCC------CCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCC
Q 015517 108 KEDVDIMANLNFDAYRFSI--SWSRI--------FP--YGT------GKVNWKGVAYYNQLINYLLKRGITPYANLYHYD 169 (405)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi--~Wsri--------~P--~~~------g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d 169 (405)
+.=++..|+.|+|.+|+.+ .|.+. .| ..+ ..+|++-.++.+++|+.|.++||++.+.+.| +
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g 111 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-G 111 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--H
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-C
Confidence 3347888999999999998 44443 11 110 1389999999999999999999999988765 2
Q ss_pred CcHHHHHhcCCCCC---hHHHHHHHHHHHHHHHHcCCC-cceEEecccc
Q 015517 170 LPEALEKKYNGLLS---KRVVKDFADYADFCFKTFGDR-VKNWMTFNEP 214 (405)
Q Consensus 170 ~P~~l~~~yggw~~---~~~~~~F~~ya~~~~~~fgd~-V~~w~t~NEp 214 (405)
.|. .+ +.|-. .-..+.-.+|.+.|++||+.. =..|++-||-
T Consensus 112 ~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 112 CPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred Ccc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 221 11 44532 234778889999999999998 3679998885
No 30
>PLN02801 beta-amylase
Probab=96.70 E-value=0.0091 Score=62.41 Aligned_cols=99 Identities=16% Similarity=0.365 Sum_probs=79.1
Q ss_pred ccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcC-C-----------CCCc
Q 015517 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-H-----------YDLP 171 (405)
Q Consensus 104 y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~-H-----------~d~P 171 (405)
-.-.+..++.+|.+|++.+-+.+-|--+|.++++++|+++ |+++++.+++.|++..+.|. | .-+|
T Consensus 36 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 112 (517)
T PLN02801 36 EEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIP 112 (517)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 3347889999999999999999999999998889999966 99999999999999777654 3 3589
Q ss_pred HHHHHh--------c---CC----------------CCChHHHHHHHHHHHHHHHHcCCCc
Q 015517 172 EALEKK--------Y---NG----------------LLSKRVVKDFADYADFCFKTFGDRV 205 (405)
Q Consensus 172 ~~l~~~--------y---gg----------------w~~~~~~~~F~~ya~~~~~~fgd~V 205 (405)
+|+.+. | .| +..+.-++.|.+|-+-+.++|.+..
T Consensus 113 ~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 113 QWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred HHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 998753 1 12 1223357889999988888887654
No 31
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.45 E-value=0.0075 Score=59.81 Aligned_cols=87 Identities=18% Similarity=0.348 Sum_probs=71.8
Q ss_pred ecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEE--cCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHc
Q 015517 124 FSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYAN--LYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTF 201 (405)
Q Consensus 124 fsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vt--L~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~f 201 (405)
--..|.-|+|.. |.+|+++ =|.+.+-++++||..--- +.|--.|.|+.. ..+..+...+...++...+.+||
T Consensus 65 nemKwe~i~p~~-G~f~Fe~---AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 65 NEMKWEAIEPER-GRFNFEA---ADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred cccccccccCCC-CccCccc---hHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 345799999986 9999977 588899999999986542 235567889863 34777889999999999999999
Q ss_pred CCCcceEEeccccch
Q 015517 202 GDRVKNWMTFNEPRV 216 (405)
Q Consensus 202 gd~V~~w~t~NEp~~ 216 (405)
++.|..|-+.|||--
T Consensus 139 kg~~~sWDVVNE~vd 153 (345)
T COG3693 139 KGSVASWDVVNEAVD 153 (345)
T ss_pred cCceeEEEecccccC
Confidence 999999999999965
No 32
>PLN02905 beta-amylase
Probab=96.38 E-value=0.019 Score=61.28 Aligned_cols=100 Identities=16% Similarity=0.329 Sum_probs=79.5
Q ss_pred ccccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcC-C-----------CC
Q 015517 102 DQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-H-----------YD 169 (405)
Q Consensus 102 d~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~-H-----------~d 169 (405)
....-.+..++.+|.+|++.+-+.+-|--+|.++++++|++| |+++++.+++.|++..+.|. | .-
T Consensus 283 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IP 359 (702)
T PLN02905 283 ADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIP 359 (702)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 456668889999999999999999999999998889999966 99999999999999777664 4 25
Q ss_pred CcHHHHHh--------c---CCC----------------CChHHHHHHHHHHHHHHHHcCCC
Q 015517 170 LPEALEKK--------Y---NGL----------------LSKRVVKDFADYADFCFKTFGDR 204 (405)
Q Consensus 170 ~P~~l~~~--------y---ggw----------------~~~~~~~~F~~ya~~~~~~fgd~ 204 (405)
+|+|+.+. | .|- ..+.-++.|.+|-+-+..+|.+.
T Consensus 360 LP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred CCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998753 1 121 12345688888888887777654
No 33
>PLN02705 beta-amylase
Probab=96.33 E-value=0.02 Score=61.00 Aligned_cols=99 Identities=18% Similarity=0.333 Sum_probs=78.1
Q ss_pred cccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcC-C-----------CCC
Q 015517 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-H-----------YDL 170 (405)
Q Consensus 103 ~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~-H-----------~d~ 170 (405)
.-.-.+..++.+|.+|++.+-+.+-|--+|.++.+++|++| |+++++.+++.|++..+.|. | .-+
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 342 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISL 342 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccC
Confidence 34557889999999999999999999999998889999966 99999999999999777664 3 259
Q ss_pred cHHHHHh--------c---CCC----------------CChHHHHHHHHHHHHHHHHcCCC
Q 015517 171 PEALEKK--------Y---NGL----------------LSKRVVKDFADYADFCFKTFGDR 204 (405)
Q Consensus 171 P~~l~~~--------y---ggw----------------~~~~~~~~F~~ya~~~~~~fgd~ 204 (405)
|+|+.+. | .|- ..+.-++.|.+|.+-+-.+|.+.
T Consensus 343 P~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 343 PQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred CHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9998753 1 111 12335688888888887777664
No 34
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.23 E-value=0.0071 Score=61.61 Aligned_cols=100 Identities=23% Similarity=0.326 Sum_probs=55.0
Q ss_pred hCCCCEEEecc---cc------------cccc--cCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhc
Q 015517 116 NLNFDAYRFSI---SW------------SRIF--PYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKY 178 (405)
Q Consensus 116 ~lG~~~~Rfsi---~W------------sri~--P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~y 178 (405)
.+|++.+|+.| ++ .|.+ +..+|.+|+.+=+-=+.++++++++|++.++.. -+..|.|+....
T Consensus 58 GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF-SNSPP~~MT~NG 136 (384)
T PF14587_consen 58 GLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAF-SNSPPWWMTKNG 136 (384)
T ss_dssp S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE--SSS-GGGSSSS
T ss_pred CceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe-ecCCCHHHhcCC
Confidence 58999999887 33 3332 222366776544445668999999999988754 567777776431
Q ss_pred ---CC-----CCChHHHHHHHHHHHHHHHHcCC---CcceEEeccccch
Q 015517 179 ---NG-----LLSKRVVKDFADYADFCFKTFGD---RVKNWMTFNEPRV 216 (405)
Q Consensus 179 ---gg-----w~~~~~~~~F~~ya~~~~~~fgd---~V~~w~t~NEp~~ 216 (405)
++ =+.++..++|++|-..|+++|.+ .+++-.++|||+.
T Consensus 137 ~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 137 SASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 11 14567899999999999999833 5788999999983
No 35
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.12 E-value=0.024 Score=61.42 Aligned_cols=93 Identities=15% Similarity=0.198 Sum_probs=66.5
Q ss_pred cchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHH-------h
Q 015517 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEK-------K 177 (405)
Q Consensus 105 ~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~-------~ 177 (405)
..+.+|+++||++|+|++|+|- .|.. ..+++.|-+.||-++.-+.-+....|... .
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~~------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~ 375 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPYS------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKP 375 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCCC------------HHHHHHHHhcCcEEEEecccccccccccccccccccc
Confidence 3478999999999999999962 2332 46788999999988876643332222211 0
Q ss_pred cCCCC----ChHHHHHHHHHHHHHHHHcCCC--cceEEecccc
Q 015517 178 YNGLL----SKRVVKDFADYADFCFKTFGDR--VKNWMTFNEP 214 (405)
Q Consensus 178 yggw~----~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEp 214 (405)
...|. +++..+.+.+-++.+++++++. |-.|.+-||+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~ 418 (604)
T PRK10150 376 KETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEP 418 (604)
T ss_pred cccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCC
Confidence 01222 3567788889999999999986 6689999997
No 36
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.04 E-value=0.36 Score=47.69 Aligned_cols=135 Identities=18% Similarity=0.278 Sum_probs=77.7
Q ss_pred CCCCCCchhhhhhh-hhcccccCCCCCcCchhhcccccCCcccCCCCCCCCcccccchHHHHHHHHhCCCCEEEeccccc
Q 015517 51 SLPNGFVFGTATSA-YQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWS 129 (405)
Q Consensus 51 ~fP~~FlwG~atsa-~Q~EG~~~~~gkg~s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~~Rfsi~Ws 129 (405)
..|++|+.|+-.|. +|+|-. ++| ..+ .++. -++=++.+|+.|+|.+|+-| |-
T Consensus 34 ~~~~dFikGaDis~l~~lE~~---Gvk--------------f~d-~ng~--------~qD~~~iLK~~GvNyvRlRv-wn 86 (403)
T COG3867 34 NSPNDFIKGADISSLIELENS---GVK--------------FFD-TNGV--------RQDALQILKNHGVNYVRLRV-WN 86 (403)
T ss_pred CChHHhhccccHHHHHHHHHc---Cce--------------EEc-cCCh--------HHHHHHHHHHcCcCeEEEEE-ec
Confidence 48999999997654 677721 211 111 1221 13446999999999999976 21
Q ss_pred ccc-cCCC---CCCChhHHHHHHHHHHHHHHCCCEEEEEcC---CCCCcHHHHHhcCCCCCh---HHHHHHHHHHHHHHH
Q 015517 130 RIF-PYGT---GKVNWKGVAYYNQLINYLLKRGITPYANLY---HYDLPEALEKKYNGLLSK---RVVKDFADYADFCFK 199 (405)
Q Consensus 130 ri~-P~~~---g~~n~~~l~~y~~~id~l~~~gI~p~vtL~---H~d~P~~l~~~yggw~~~---~~~~~F~~ya~~~~~ 199 (405)
.=. -+|. |.-|. ++.--++-.+.+++||+++++.| ||.=|.. +++-..|.+- ..-.+--+|.+.+.+
T Consensus 87 dP~dsngn~yggGnnD--~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPak-Q~kPkaW~~l~fe~lk~avy~yTk~~l~ 163 (403)
T COG3867 87 DPYDSNGNGYGGGNND--LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAK-QKKPKAWENLNFEQLKKAVYSYTKYVLT 163 (403)
T ss_pred CCccCCCCccCCCcch--HHHHHHHHHHHHhcCcEEEeeccchhhccChhh-cCCcHHhhhcCHHHHHHHHHHHHHHHHH
Confidence 111 1111 22332 44456777889999999999997 4544532 2222346542 223334445555555
Q ss_pred Hc---CCCcceEEeccccc
Q 015517 200 TF---GDRVKNWMTFNEPR 215 (405)
Q Consensus 200 ~f---gd~V~~w~t~NEp~ 215 (405)
++ |=....-.+=||-+
T Consensus 164 ~m~~eGi~pdmVQVGNEtn 182 (403)
T COG3867 164 TMKKEGILPDMVQVGNETN 182 (403)
T ss_pred HHHHcCCCccceEeccccC
Confidence 44 44456667889965
No 37
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.43 E-value=0.1 Score=47.33 Aligned_cols=101 Identities=17% Similarity=0.306 Sum_probs=67.6
Q ss_pred chHHHHHHHHhCCCCEEEecccccccc-----cCCC--CCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhc
Q 015517 106 RYKEDVDIMANLNFDAYRFSISWSRIF-----PYGT--GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKY 178 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~-----P~~~--g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~y 178 (405)
+|+++++.|+++|++++=+- |+... |..- +.+.....+..+.+++++.+.||++++.|+. -|.|...
T Consensus 21 ~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~-- 94 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ-- 94 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc--
Confidence 59999999999999988533 44442 2210 1122234467999999999999999999974 3555552
Q ss_pred CCCCChH-HHHHHHHHHHHHHHHcCCC--cceEEeccccc
Q 015517 179 NGLLSKR-VVKDFADYADFCFKTFGDR--VKNWMTFNEPR 215 (405)
Q Consensus 179 ggw~~~~-~~~~F~~ya~~~~~~fgd~--V~~w~t~NEp~ 215 (405)
.+.+ -++.=..-++.+.++||.+ +..|-+-.|+.
T Consensus 95 ---~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ---GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 1111 2333345678888889975 55677777765
No 38
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.34 E-value=0.2 Score=54.06 Aligned_cols=94 Identities=13% Similarity=0.179 Sum_probs=78.3
Q ss_pred chHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEc--------CCCCCcHHHHHh
Q 015517 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL--------YHYDLPEALEKK 177 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL--------~H~d~P~~l~~~ 177 (405)
.|++=|+.+|++|+|++-.=+-|.-.+|.. |++|++|.-=..++|..+.++|+=+++-+ .|-.+|.||...
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~-g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~ 128 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP-GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNV 128 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC-CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhC
Confidence 477889999999999999999999999998 99999998777888999999998877644 256789888765
Q ss_pred cCCC----CChHHHHHHHHHHHHHHHHc
Q 015517 178 YNGL----LSKRVVKDFADYADFCFKTF 201 (405)
Q Consensus 178 yggw----~~~~~~~~F~~ya~~~~~~f 201 (405)
.|- .|+.+..+..+|.+.++...
T Consensus 129 -pg~~~Rt~nepfk~~~~~~~~~iv~~m 155 (649)
T KOG0496|consen 129 -PGIVFRTDNEPFKAEMERWTTKIVPMM 155 (649)
T ss_pred -CceEEecCChHHHHHHHHHHHHHHHHH
Confidence 552 36778888888988888743
No 39
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=94.17 E-value=0.21 Score=57.60 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=65.0
Q ss_pred cccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcC---CCCCcHHHHHhcC
Q 015517 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY---HYDLPEALEKKYN 179 (405)
Q Consensus 103 ~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~---H~d~P~~l~~~yg 179 (405)
....+++||++||++|+|++|+| -.|.. ..+.+.|-+.||-++--.. |.-.|. . .
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~------------p~fydlcDe~GilV~dE~~~e~hg~~~~---~--~ 426 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH------------PLWYELCDRYGLYVVDEANIETHGMVPM---N--R 426 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC------------HHHHHHHHHcCCEEEEecCccccCCccc---c--C
Confidence 34678999999999999999996 23332 3556888999998886642 211110 0 0
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCC--cceEEeccccc
Q 015517 180 GLLSKRVVKDFADYADFCFKTFGDR--VKNWMTFNEPR 215 (405)
Q Consensus 180 gw~~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEp~ 215 (405)
...+++..+.+.+=++.+++|.+++ |-.|.+-||+.
T Consensus 427 ~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 427 LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 1124566777888889999999987 66899999974
No 40
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=93.66 E-value=0.035 Score=57.69 Aligned_cols=108 Identities=17% Similarity=0.116 Sum_probs=79.1
Q ss_pred hHHHHHHHHhCCCCEEEecccc-cccccCCCCCCChhH-HHHHHHHHHHHHHCCCEEEEEcCC----C-----CCcHHHH
Q 015517 107 YKEDVDIMANLNFDAYRFSISW-SRIFPYGTGKVNWKG-VAYYNQLINYLLKRGITPYANLYH----Y-----DLPEALE 175 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~W-sri~P~~~g~~n~~~-l~~y~~~id~l~~~gI~p~vtL~H----~-----d~P~~l~ 175 (405)
.+.|++.++.+|++..|++|-= ...- +..|..|.+. +.+.+.+++.+...+|+.++||.. + -+| |..
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc~-d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ip-wag 105 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDCR-DKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIP-WAG 105 (587)
T ss_pred hhcccccccCccceeEEEEEecCcchh-hhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEee-cCC
Confidence 5678899999999999999532 3322 2237778777 899999999999999999999863 2 122 110
Q ss_pred Hhc--CCCCChHHHHHHHHHHHHHHHHcCCC--cceEEeccccch
Q 015517 176 KKY--NGLLSKRVVKDFADYADFCFKTFGDR--VKNWMTFNEPRV 216 (405)
Q Consensus 176 ~~y--ggw~~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEp~~ 216 (405)
... .-...+++...|.+|++.+++.|+-. +..|..-|||.+
T Consensus 106 ~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 106 EQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 000 01234667889999999999999976 456999999766
No 41
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=93.13 E-value=0.41 Score=55.27 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=63.5
Q ss_pred ccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEc----CCCCCcHHHHHhcC
Q 015517 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL----YHYDLPEALEKKYN 179 (405)
Q Consensus 104 y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL----~H~d~P~~l~~~yg 179 (405)
...+++|+++||++|+|++|+| ..|.. ..+.+.|-+.||-++--. +.|.... .+
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~s-----HyP~~------------~~fydlcDe~GllV~dE~~~e~~g~~~~~----~~- 411 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTA-----HYPND------------PRFYELCDIYGLFVMAETDVESHGFANVG----DI- 411 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCCC------------HHHHHHHHHCCCEEEECCcccccCccccc----cc-
Confidence 4678999999999999999997 24443 466788999999877653 1121110 00
Q ss_pred CC--CChHHHHHHHHHHHHHHHHcCCC--cceEEecccc
Q 015517 180 GL--LSKRVVKDFADYADFCFKTFGDR--VKNWMTFNEP 214 (405)
Q Consensus 180 gw--~~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEp 214 (405)
.+ .++...+.|.+=++.+++|.++. |-.|.+-||.
T Consensus 412 ~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 412 SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 11 23445567777788999999986 6689999997
No 42
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=92.01 E-value=0.78 Score=51.51 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=67.3
Q ss_pred cccccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCC
Q 015517 101 VDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNG 180 (405)
Q Consensus 101 ~d~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~ygg 180 (405)
+-.+..+.+|+++||++|+|++|.| =.|.. ..+.+.|-+.||=++=...+.. +++
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~------------~~~ydLcDelGllV~~Ea~~~~--------~~~ 371 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS------------EEFYDLCDELGLLVIDEAMIET--------HGM 371 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC------------HHHHHHHHHhCcEEEEecchhh--------cCC
Confidence 4456669999999999999999999 33433 6677888899999886654321 133
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCC--cceEEeccccc
Q 015517 181 LLSKRVVKDFADYADFCFKTFGDR--VKNWMTFNEPR 215 (405)
Q Consensus 181 w~~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEp~ 215 (405)
...++..+...+=++..++|-++. |-.|..-||..
T Consensus 372 ~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 372 PDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 355666667777788889998875 66899999965
No 43
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=87.48 E-value=0.8 Score=47.05 Aligned_cols=101 Identities=17% Similarity=0.246 Sum_probs=72.3
Q ss_pred HHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCC--ChHHHHHHH
Q 015517 114 MANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLL--SKRVVKDFA 191 (405)
Q Consensus 114 ~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~--~~~~~~~F~ 191 (405)
-+|+|++-+|.---|.-++-+ =-+++ .++++++|.+...|+.-+.+-.||+.+.--...|.+=. .....+.++
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~--~~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~ 88 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK--LFYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIA 88 (428)
T ss_pred hhhhceeeehhcceeeeeecc--ccCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHH
Confidence 358899988888888733222 22444 67999999999999555556668877765544343322 234789999
Q ss_pred HHHHHHHHHcCCC-cc--eEEeccccchhhc
Q 015517 192 DYADFCFKTFGDR-VK--NWMTFNEPRVVAA 219 (405)
Q Consensus 192 ~ya~~~~~~fgd~-V~--~w~t~NEp~~~~~ 219 (405)
.+++.|+.+||-+ |. ....+||||..+.
T Consensus 89 ~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ad 119 (428)
T COG3664 89 AFLKHVIRRVGVEFVRKWPFYSPNEPNLLAD 119 (428)
T ss_pred HHHHHHHHHhChhheeecceeecCCCCcccc
Confidence 9999999999964 33 4679999998753
No 44
>smart00642 Aamy Alpha-amylase domain.
Probab=87.29 E-value=1.7 Score=39.28 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHhCCCCEEEeccccccccc--C--CC-----CCCC--hhHHHHHHHHHHHHHHCCCEEEEEcC
Q 015517 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFP--Y--GT-----GKVN--WKGVAYYNQLINYLLKRGITPYANLY 166 (405)
Q Consensus 104 y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P--~--~~-----g~~n--~~~l~~y~~~id~l~~~gI~p~vtL~ 166 (405)
+....+-++.++++|++++-++=-+..... . +. -.+| ....+=++++|++|+++||++++++-
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 455677788999999999998876555531 1 10 1122 12346689999999999999999863
No 45
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=84.38 E-value=3.9 Score=40.89 Aligned_cols=89 Identities=16% Similarity=0.239 Sum_probs=49.0
Q ss_pred chHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChH
Q 015517 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKR 185 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~ 185 (405)
..++|+.+|++||+|++|+= -|-|.. | .+...+.|.+.||=++++|.-. ...+... .-|.+ =
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~~----n------Hd~CM~~~~~aGIYvi~Dl~~p--~~sI~r~-~P~~s-w 115 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPSK----N------HDECMSAFADAGIYVILDLNTP--NGSINRS-DPAPS-W 115 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TTS------------HHHHHHHHHTT-EEEEES-BT--TBS--TT-S------
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCCC----C------HHHHHHHHHhCCCEEEEecCCC--CccccCC-CCcCC-C
Confidence 57999999999999999974 233443 3 4888999999999999999532 1122111 11111 1
Q ss_pred HHHHHHHHHHHH--HHHcCCCcceEEeccc
Q 015517 186 VVKDFADYADFC--FKTFGDRVKNWMTFNE 213 (405)
Q Consensus 186 ~~~~F~~ya~~~--~~~fgd~V~~w~t~NE 213 (405)
..+.|.+|-.++ |.+|- -+-.+..=||
T Consensus 116 ~~~l~~~~~~vid~fa~Y~-N~LgFf~GNE 144 (314)
T PF03198_consen 116 NTDLLDRYFAVIDAFAKYD-NTLGFFAGNE 144 (314)
T ss_dssp -HHHHHHHHHHHHHHTT-T-TEEEEEEEES
T ss_pred CHHHHHHHHHHHHHhccCC-ceEEEEecce
Confidence 245566665553 34442 3545555566
No 46
>PLN02361 alpha-amylase
Probab=82.90 E-value=3 Score=43.21 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=47.5
Q ss_pred ccccchHHHHHHHHhCCCCEEEecccccccccCCCCC-----CCh--hHHHHHHHHHHHHHHCCCEEEEEc
Q 015517 102 DQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGK-----VNW--KGVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 102 d~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~-----~n~--~~l~~y~~~id~l~~~gI~p~vtL 165 (405)
.+|....+-++.++++|++++=++=.....-+.|... +|. ...+=++++|++|+++||++++++
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4789999999999999999998876554443333111 221 123458999999999999999974
No 47
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=82.25 E-value=16 Score=31.79 Aligned_cols=91 Identities=15% Similarity=0.233 Sum_probs=56.6
Q ss_pred HHHHHHHhCCCCEEEeccc----ccccccCCCC--CCChhHHHHHHHHHHHHHHCCCEEEEEcCC-CC------CcHHHH
Q 015517 109 EDVDIMANLNFDAYRFSIS----WSRIFPYGTG--KVNWKGVAYYNQLINYLLKRGITPYANLYH-YD------LPEALE 175 (405)
Q Consensus 109 eDi~l~~~lG~~~~Rfsi~----Wsri~P~~~g--~~n~~~l~~y~~~id~l~~~gI~p~vtL~H-~d------~P~~l~ 175 (405)
+=++.+|++|+|++-+... |+ -.|...| .+..+ -+.+.++|++|+++||++++=+.. || .|.|+.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~a-yYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~ 81 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYA-YYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFV 81 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEE-EccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceee
Confidence 4468999999999998332 21 1222211 12222 377999999999999999986543 22 366665
Q ss_pred HhcC------------CC----CChHHHHHHHHHHHHHHHHc
Q 015517 176 KKYN------------GL----LSKRVVKDFADYADFCFKTF 201 (405)
Q Consensus 176 ~~yg------------gw----~~~~~~~~F~~ya~~~~~~f 201 (405)
..-. || .|....+...+-.+.++++|
T Consensus 82 ~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 82 RDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred ECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 2211 23 24455666666667777777
No 48
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=81.58 E-value=13 Score=37.15 Aligned_cols=87 Identities=18% Similarity=0.269 Sum_probs=62.5
Q ss_pred ccchHHHHHHHHhCCCCEEEecc---cccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCC
Q 015517 104 YHRYKEDVDIMANLNFDAYRFSI---SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNG 180 (405)
Q Consensus 104 y~~y~eDi~l~~~lG~~~~Rfsi---~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~ygg 180 (405)
..||.+-.++++++|+|.+-+.= .-.. +..+-|+.+.++-|.++.+||++.+++. |.-|.-+ ||
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~--------Lt~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----gg 122 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKL--------LTPEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----GG 122 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGG--------GSTTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----TS
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhh--------cCHHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----CC
Confidence 35788889999999999886532 1222 2233477889999999999999999995 8888654 55
Q ss_pred -----CCChHHHHHHHHHHHHHHHHcCC
Q 015517 181 -----LLSKRVVKDFADYADFCFKTFGD 203 (405)
Q Consensus 181 -----w~~~~~~~~F~~ya~~~~~~fgd 203 (405)
-++++++..+.+=++.+.++.-|
T Consensus 123 L~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 123 LPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp -S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35788999999999999988765
No 49
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=81.47 E-value=6.9 Score=39.07 Aligned_cols=98 Identities=23% Similarity=0.258 Sum_probs=65.2
Q ss_pred cchHHHHHHHHhCCCCEEEecccc-------cccccCCC---CCC-ChhHHHHHHHHHHHHHHCCCEEEEEc----CC--
Q 015517 105 HRYKEDVDIMANLNFDAYRFSISW-------SRIFPYGT---GKV-NWKGVAYYNQLINYLLKRGITPYANL----YH-- 167 (405)
Q Consensus 105 ~~y~eDi~l~~~lG~~~~Rfsi~W-------sri~P~~~---g~~-n~~~l~~y~~~id~l~~~gI~p~vtL----~H-- 167 (405)
...++-++.++++|+|++=+.+.+ |.++|... |.. ...|.+.+..+|++++++||++..-+ -.
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~ 98 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPD 98 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCc
Confidence 446788899999999987766543 33444220 111 11245678999999999999988544 11
Q ss_pred -----CCCcHHHHHh-------c----CC--CC---ChHHHHHHHHHHHHHHHHcC
Q 015517 168 -----YDLPEALEKK-------Y----NG--LL---SKRVVKDFADYADFCFKTFG 202 (405)
Q Consensus 168 -----~d~P~~l~~~-------y----gg--w~---~~~~~~~F~~ya~~~~~~fg 202 (405)
-..|.|+..+ + ++ |+ +|++.+...+-++.++++|.
T Consensus 99 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 99 VSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred hhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1236665421 1 22 44 57889999999999999996
No 50
>PLN00196 alpha-amylase; Provisional
Probab=79.38 E-value=3.8 Score=42.85 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=45.3
Q ss_pred cccchHHHHHHHHhCCCCEEEecccccccccCCCC-----CCCh---hHHHHHHHHHHHHHHCCCEEEEEc
Q 015517 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTG-----KVNW---KGVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 103 ~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g-----~~n~---~~l~~y~~~id~l~~~gI~p~vtL 165 (405)
.|....+.+..+++||++++=++=.....-+.|.. .+|. ...+=++++|++++++||++|++.
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 35567888999999999999988655444333321 1221 123458999999999999999974
No 51
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=79.04 E-value=41 Score=33.23 Aligned_cols=149 Identities=20% Similarity=0.214 Sum_probs=82.7
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCC---cHH----------HHHhcCCCC---------ChHHHHH
Q 015517 132 FPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL---PEA----------LEKKYNGLL---------SKRVVKD 189 (405)
Q Consensus 132 ~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~---P~~----------l~~~yggw~---------~~~~~~~ 189 (405)
.|...+-++.+-+.-++++++.++++|-+.++=|.|-.- |.. .... .... =.++++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~mt~~ei~~~i~~ 142 (327)
T cd02803 64 YPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSP-GGGEPPREMTKEEIEQIIED 142 (327)
T ss_pred CCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCC-CCCCCCCcCCHHHHHHHHHH
Confidence 444336788999999999999999999999999998421 100 0000 0000 1347888
Q ss_pred HHHHHHHHHHHcCCCcceEEeccccchhhcccCCCCCC-CCC---CCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHH
Q 015517 190 FADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFF-APG---RCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQR 265 (405)
Q Consensus 190 F~~ya~~~~~~fgd~V~~w~t~NEp~~~~~~gy~~g~~-~Pg---~~~~~~~~~~~~~~~~~~~~~~hn~llAHA~Av~~ 265 (405)
|++-|+.+.+ -| |....+....||+...| .|. +.+. - |.+ +-|-..--.+.++.
T Consensus 143 ~~~aA~~a~~-aG--------fDgveih~~~gyL~~qFlsp~~n~R~d~-----y-Ggs-------~enr~r~~~eii~a 200 (327)
T cd02803 143 FAAAARRAKE-AG--------FDGVEIHGAHGYLLSQFLSPYTNKRTDE-----Y-GGS-------LENRARFLLEIVAA 200 (327)
T ss_pred HHHHHHHHHH-cC--------CCEEEEcchhhhHHHHhcCccccCCCcc-----c-CCC-------HHHHHHHHHHHHHH
Confidence 9988888765 34 23333445567765433 232 1111 1 111 11222223456666
Q ss_pred HHHHhcccCCceEEEEecCceeecCCCCHHH-HHHHHHHHH
Q 015517 266 YRQKYEQKQKGRIGILLDFVWYEPLTRSKAD-NYAAQRARD 305 (405)
Q Consensus 266 ~r~~~~~~~~~kIGi~~~~~~~~P~s~~~~D-~~AA~~~~~ 305 (405)
+|+... .+..||+-++.....+...++++ +..+++..+
T Consensus 201 vr~~~g--~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~ 239 (327)
T cd02803 201 VREAVG--PDFPVGVRLSADDFVPGGLTLEEAIEIAKALEE 239 (327)
T ss_pred HHHHcC--CCceEEEEechhccCCCCCCHHHHHHHHHHHHH
Confidence 666542 24678888887655544334544 334444443
No 52
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.97 E-value=5 Score=42.27 Aligned_cols=111 Identities=20% Similarity=0.304 Sum_probs=72.2
Q ss_pred ccchHHHHHHHHhCCCCEEEec----ccccccccCC----------------------------CCCCChh----HHHHH
Q 015517 104 YHRYKEDVDIMANLNFDAYRFS----ISWSRIFPYG----------------------------TGKVNWK----GVAYY 147 (405)
Q Consensus 104 y~~y~eDi~l~~~lG~~~~Rfs----i~Wsri~P~~----------------------------~g~~n~~----~l~~y 147 (405)
|.+|++.|+.|+=+|+|..=-. +.|.+|+-.- .|+..+. -+-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 6899999999999999965432 2455544321 0222221 13334
Q ss_pred HHHHHHHHHCCCEEEEEcCCCCCcHHHHHhc--------CCCC------------C---hHHHHHHHHHHHHHHHHcCCC
Q 015517 148 NQLINYLLKRGITPYANLYHYDLPEALEKKY--------NGLL------------S---KRVVKDFADYADFCFKTFGDR 204 (405)
Q Consensus 148 ~~~id~l~~~gI~p~vtL~H~d~P~~l~~~y--------ggw~------------~---~~~~~~F~~ya~~~~~~fgd~ 204 (405)
+++|+++++-||+|++--+---+|..|..-+ +.|. + +-+.+-=..|.+...++||+-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 7899999999999999888777898887643 2343 1 224444455667778889962
Q ss_pred --cceEEecccc
Q 015517 205 --VKNWMTFNEP 214 (405)
Q Consensus 205 --V~~w~t~NEp 214 (405)
+-.=-||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 2223389985
No 53
>PRK05402 glycogen branching enzyme; Provisional
Probab=78.68 E-value=11 Score=42.09 Aligned_cols=93 Identities=10% Similarity=0.073 Sum_probs=60.0
Q ss_pred ccchHHHH-HHHHhCCCCEEEeccccc---------------ccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEc--
Q 015517 104 YHRYKEDV-DIMANLNFDAYRFSISWS---------------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL-- 165 (405)
Q Consensus 104 y~~y~eDi-~l~~~lG~~~~Rfsi~Ws---------------ri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL-- 165 (405)
|.-..+.+ +-+++||++++=+.=-.. .|.|.- |. .+=++++|++|.++||++|+++
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~-Gt-----~~dfk~lV~~~H~~Gi~VilD~V~ 337 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF-GT-----PDDFRYFVDACHQAGIGVILDWVP 337 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc-CC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 33344553 788999999997654321 122221 32 3458999999999999999984
Q ss_pred CCCCCc-----------HHHHH-----hcCCC-------CChHHHHHHHHHHHHHHHHcC
Q 015517 166 YHYDLP-----------EALEK-----KYNGL-------LSKRVVKDFADYADFCFKTFG 202 (405)
Q Consensus 166 ~H~d~P-----------~~l~~-----~yggw-------~~~~~~~~F~~ya~~~~~~fg 202 (405)
.|.... .+... .+..| .++++.+.+.+-++..+++||
T Consensus 338 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 338 AHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 465221 11000 01123 478888999999999999887
No 54
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=78.46 E-value=4.8 Score=38.46 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=41.7
Q ss_pred hHHHHHHHHhCCCCEEEecccccccc-cCCCC-------CCChhHHHHHHHHHHHHHHCCCEEEEEcC
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIF-PYGTG-------KVNWKGVAYYNQLINYLLKRGITPYANLY 166 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~-P~~~g-------~~n~~~l~~y~~~id~l~~~gI~p~vtL~ 166 (405)
..+-++.+++||++++-++=-+..-. ..|.. .......+=+++||++|.++||++|+++-
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 35668899999999999986555211 01100 12233467799999999999999999864
No 55
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=78.35 E-value=3.4 Score=41.65 Aligned_cols=110 Identities=20% Similarity=0.359 Sum_probs=59.6
Q ss_pred ccchHHHHHHHHhCCCCEEEec------------------------------ccccccccCC--CCCCC----hhHHHHH
Q 015517 104 YHRYKEDVDIMANLNFDAYRFS------------------------------ISWSRIFPYG--TGKVN----WKGVAYY 147 (405)
Q Consensus 104 y~~y~eDi~l~~~lG~~~~Rfs------------------------------i~Wsri~P~~--~g~~n----~~~l~~y 147 (405)
|.||++.|+.|+=-|+|..=-- +.|.|.---. .|++. .+-.+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 6789999999999999854311 1333331110 02222 2224556
Q ss_pred HHHHHHHHHCCCEEEEEcCCCCCcHHHHHhc--------CCCC--------ChHHHHHHHHHHHHHH----HHcCCCcce
Q 015517 148 NQLINYLLKRGITPYANLYHYDLPEALEKKY--------NGLL--------SKRVVKDFADYADFCF----KTFGDRVKN 207 (405)
Q Consensus 148 ~~~id~l~~~gI~p~vtL~H~d~P~~l~~~y--------ggw~--------~~~~~~~F~~ya~~~~----~~fgd~V~~ 207 (405)
+++++++++.||+||+--+---+|..+.++| +.|. .+ .-+.|.+.++... +.|| .-.+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCce
Confidence 8999999999999999888777899998886 2232 23 3467777776664 4588 3333
Q ss_pred EE--eccccc
Q 015517 208 WM--TFNEPR 215 (405)
Q Consensus 208 w~--t~NEp~ 215 (405)
+. +|||-.
T Consensus 176 Y~~D~FnE~~ 185 (333)
T PF05089_consen 176 YAADPFNEGG 185 (333)
T ss_dssp EE--TTTTS-
T ss_pred eCCCccCCCC
Confidence 43 888853
No 56
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=76.92 E-value=10 Score=40.77 Aligned_cols=92 Identities=15% Similarity=0.236 Sum_probs=60.1
Q ss_pred ccchHHHHHHHHhCCCCEEEeccc--------c-------cccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEc--C
Q 015517 104 YHRYKEDVDIMANLNFDAYRFSIS--------W-------SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL--Y 166 (405)
Q Consensus 104 y~~y~eDi~l~~~lG~~~~Rfsi~--------W-------sri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL--~ 166 (405)
+.-..+-++.+++||++++-+.=- | -.+.|.- |. .+=++++|++|.++||++|+++ .
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~-G~-----~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY-GG-----PDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEEccC
Confidence 444566789999999999976531 1 1111111 22 4458999999999999999984 3
Q ss_pred CCCC---------cHHHHHhc-CCC------CCh---HHHHHHHHHHHHHHHHcC
Q 015517 167 HYDL---------PEALEKKY-NGL------LSK---RVVKDFADYADFCFKTFG 202 (405)
Q Consensus 167 H~d~---------P~~l~~~y-ggw------~~~---~~~~~F~~ya~~~~~~fg 202 (405)
|... | |+...+ .+| .++ ++.+.+.+-++.-+++||
T Consensus 184 H~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 184 HFGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred CCCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 5421 2 222111 233 245 777888888888888887
No 57
>PRK12313 glycogen branching enzyme; Provisional
Probab=76.35 E-value=13 Score=40.79 Aligned_cols=93 Identities=12% Similarity=0.165 Sum_probs=60.6
Q ss_pred ccchHHH-HHHHHhCCCCEEEeccccc---------------ccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEc--
Q 015517 104 YHRYKED-VDIMANLNFDAYRFSISWS---------------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL-- 165 (405)
Q Consensus 104 y~~y~eD-i~l~~~lG~~~~Rfsi~Ws---------------ri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL-- 165 (405)
|.-..+. ++-+++||++++=+.=-.. .|.|.- |. .+=++++|++|.++||++|+++
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~-Gt-----~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY-GT-----PEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC-CC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 4445566 4999999999998654222 122221 32 3448999999999999999984
Q ss_pred CCCCCcH----HHH--------H---h-cCCC-------CChHHHHHHHHHHHHHHHHcC
Q 015517 166 YHYDLPE----ALE--------K---K-YNGL-------LSKRVVKDFADYADFCFKTFG 202 (405)
Q Consensus 166 ~H~d~P~----~l~--------~---~-yggw-------~~~~~~~~F~~ya~~~~~~fg 202 (405)
.|..... ++. + . +.+| .++++.+.+.+-++..+++||
T Consensus 243 nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 243 GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4643110 110 0 0 1123 368888999999999999887
No 58
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=75.34 E-value=94 Score=31.16 Aligned_cols=153 Identities=16% Similarity=0.083 Sum_probs=83.7
Q ss_pred ccccc---CCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCC---cHHH---------HHh--c-CCCC--------
Q 015517 129 SRIFP---YGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL---PEAL---------EKK--Y-NGLL-------- 182 (405)
Q Consensus 129 sri~P---~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~---P~~l---------~~~--y-ggw~-------- 182 (405)
.+..| ...+-+|.+-+..++++.+.++++|-+.++=|+|-+- +.+. ... . ..+.
T Consensus 63 ~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~ 142 (338)
T cd04733 63 HLEEPGIIGNVVLESGEDLEAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEE 142 (338)
T ss_pred cccCCCcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHH
Confidence 45565 3236788899999999999999999999999999322 1000 000 0 0011
Q ss_pred -ChHHHHHHHHHHHHHHHHcCCCcceEEeccccchhhcccCCCCCCC-CC--CCCcCCCcccCCCCCChHHHHHHHHHHH
Q 015517 183 -SKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFA-PG--RCSKAFGNCTVGNSATEPYIVAHNLILS 258 (405)
Q Consensus 183 -~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEp~~~~~~gy~~g~~~-Pg--~~~~~~~~~~~~~~~~~~~~~~hn~llA 258 (405)
=.++++.|++=|+.+ ++.| |.-..+..-.||+...|- |. ++. +.- |.| +-|-..-
T Consensus 143 eI~~~i~~~~~aA~ra-~~aG--------fDgVeih~a~gyLl~qFlsp~~N~R~----D~y-GGs-------lenR~rf 201 (338)
T cd04733 143 EIEDVIDRFAHAARLA-QEAG--------FDGVQIHAAHGYLLSQFLSPLTNKRT----DEY-GGS-------LENRARL 201 (338)
T ss_pred HHHHHHHHHHHHHHHH-HHcC--------CCEEEEchhhhhHHHHhcCCcCCCCC----ccC-CCC-------HHHHHHH
Confidence 123677888766654 4555 122234456678766542 32 111 111 111 2244444
Q ss_pred HHHHHHHHHHHhcccCCceEEEEecCceeecCCCCHHH-HHHHHHHH
Q 015517 259 HAAAVQRYRQKYEQKQKGRIGILLDFVWYEPLTRSKAD-NYAAQRAR 304 (405)
Q Consensus 259 HA~Av~~~r~~~~~~~~~kIGi~~~~~~~~P~s~~~~D-~~AA~~~~ 304 (405)
-.+.++.+|+... .+..|++-++...+.+..-++++ +..++...
T Consensus 202 ~~EiI~aIR~avG--~d~~v~vris~~~~~~~g~~~eea~~ia~~Le 246 (338)
T cd04733 202 LLEIYDAIRAAVG--PGFPVGIKLNSADFQRGGFTEEDALEVVEALE 246 (338)
T ss_pred HHHHHHHHHHHcC--CCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHH
Confidence 4556666676532 24578888886555554444444 34444433
No 59
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=74.85 E-value=17 Score=35.78 Aligned_cols=118 Identities=13% Similarity=0.148 Sum_probs=71.6
Q ss_pred chhhcccccCCcccCCCCCCCCcccccchHHHHHHHHhCCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHC
Q 015517 79 SIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKR 157 (405)
Q Consensus 79 s~wD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~~l~~y~~~id~l~~~ 157 (405)
+.|+-|....+. .. +..+.--+.++++=|+..+++|+..+=+.--|+.-..... .......-....++++-.+++
T Consensus 10 ~~W~Ww~~~~~~---~~-~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~K 85 (273)
T PF10566_consen 10 AAWSWWSMHNGK---GV-GFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEK 85 (273)
T ss_dssp EEECTCCCCTTS---SB-SS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHT
T ss_pred EEEeecccCCCC---CC-CCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHc
Confidence 566656443221 11 1223446788999999999999999999999997332211 000000113468999999999
Q ss_pred CCEEEEEcCCCC------CcHHHHH---hcC---------CC---CChHHHHHHHHHHHHHHHH
Q 015517 158 GITPYANLYHYD------LPEALEK---KYN---------GL---LSKRVVKDFADYADFCFKT 200 (405)
Q Consensus 158 gI~p~vtL~H~d------~P~~l~~---~yg---------gw---~~~~~~~~F~~ya~~~~~~ 200 (405)
|+.+++-.+|-+ +=.-+++ .|. || .+.+.++.|.+.++.++++
T Consensus 86 gVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 86 GVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp T-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 999999998765 2111211 121 12 3566899999999998876
No 60
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=73.08 E-value=6.4 Score=41.54 Aligned_cols=64 Identities=22% Similarity=0.257 Sum_probs=44.0
Q ss_pred ccccchHHHHHHHHhCCCCEEEeccccccccc---CCC--------C------CCChh--HHHHHHHHHHHHHHCCCEEE
Q 015517 102 DQYHRYKEDVDIMANLNFDAYRFSISWSRIFP---YGT--------G------KVNWK--GVAYYNQLINYLLKRGITPY 162 (405)
Q Consensus 102 d~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P---~~~--------g------~~n~~--~l~~y~~~id~l~~~gI~p~ 162 (405)
|.|....+-++.+++||++++=++=...-.-. .|. + .+|+. ..+=+++||++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 44555678899999999999988764443210 110 0 12211 34558999999999999999
Q ss_pred EEc
Q 015517 163 ANL 165 (405)
Q Consensus 163 vtL 165 (405)
+++
T Consensus 99 ~D~ 101 (479)
T PRK09441 99 ADV 101 (479)
T ss_pred EEE
Confidence 974
No 61
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=72.40 E-value=1.1e+02 Score=30.61 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=32.3
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCC
Q 015517 130 RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY 168 (405)
Q Consensus 130 ri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~ 168 (405)
+..|...+-.+.+-+..++++.|.++++|-+.++=|+|-
T Consensus 62 ~~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~ 100 (336)
T cd02932 62 RITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAHA 100 (336)
T ss_pred CCCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccCC
Confidence 344443356788899999999999999999999999994
No 62
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=71.77 E-value=13 Score=39.33 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=43.5
Q ss_pred cccchHHH-----HHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCc
Q 015517 103 QYHRYKED-----VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 171 (405)
Q Consensus 103 ~y~~y~eD-----i~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P 171 (405)
.|..|.+| +++.++.|++.+|..- ..|. ++-....|+..++.|.+..+++.+-+.|
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd-----------~lnd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFD-----------ALND--PRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEcc-----------cCCC--HHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 47778889 8999999999999873 2332 3446788888889999888888876666
No 63
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=71.08 E-value=13 Score=35.73 Aligned_cols=59 Identities=22% Similarity=0.155 Sum_probs=47.1
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCC-CCCCChhHHHHHHHHHHHHHHCCCEEEEEc
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~-~g~~n~~~l~~y~~~id~l~~~gI~p~vtL 165 (405)
-.+|++...+.|++.+|+.++.+.+.-.. -+.-.++.++...++++.+++.|+++.+++
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 38899999999999999999888664221 133345678899999999999999988666
No 64
>PLN02784 alpha-amylase
Probab=70.99 E-value=10 Score=42.90 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=48.8
Q ss_pred ccccchHHHHHHHHhCCCCEEEecccccccccCCCCC-----CCh--hHHHHHHHHHHHHHHCCCEEEEE--cCC
Q 015517 102 DQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGK-----VNW--KGVAYYNQLINYLLKRGITPYAN--LYH 167 (405)
Q Consensus 102 d~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~-----~n~--~~l~~y~~~id~l~~~gI~p~vt--L~H 167 (405)
.+|....+.++.+++||++++=++=.....-+.|... +|. ...+=++++|++|+++||+++++ +.|
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH 592 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNH 592 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccc
Confidence 4788999999999999999998876554444433211 221 12455899999999999999997 445
No 65
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=70.64 E-value=21 Score=35.47 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=51.5
Q ss_pred HHHHhCCCCEEEeccc--ccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCC------C
Q 015517 112 DIMANLNFDAYRFSIS--WSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLL------S 183 (405)
Q Consensus 112 ~l~~~lG~~~~Rfsi~--Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~------~ 183 (405)
+.+++.|++++-+++. -..-.|.-.|.............|..|+++|++++|.+ |||. +
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~-------------GG~~g~~~~~~ 85 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSF-------------GGASGTPLATS 85 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEe-------------cCCCCCccccC
Confidence 5677899999887753 12222221011100112345778999999999999998 5554 3
Q ss_pred hHHHHHHHHHHHHHHHHcC
Q 015517 184 KRVVKDFADYADFCFKTFG 202 (405)
Q Consensus 184 ~~~~~~F~~ya~~~~~~fg 202 (405)
...++.|++....+.++|+
T Consensus 86 ~~~~~~~~~a~~~~i~~y~ 104 (294)
T cd06543 86 CTSADQLAAAYQKVIDAYG 104 (294)
T ss_pred cccHHHHHHHHHHHHHHhC
Confidence 4568888888888888887
No 66
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=69.91 E-value=16 Score=38.69 Aligned_cols=56 Identities=21% Similarity=0.260 Sum_probs=42.7
Q ss_pred cccchHHH-----HHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCc
Q 015517 103 QYHRYKED-----VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 171 (405)
Q Consensus 103 ~y~~y~eD-----i~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P 171 (405)
.|..|.+| ++..++.|++.+|+.++-+.+ +-....|+..++.|+++..++.+-..|
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI-------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH-------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 36668888 899999999999999765542 335777888888998888777654335
No 67
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=69.85 E-value=14 Score=36.31 Aligned_cols=82 Identities=16% Similarity=0.079 Sum_probs=60.7
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChH
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKR 185 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~ 185 (405)
-+.|++.+++.|++.+++.++=|...-... +.--.+.++...++|+.+++.|+++.+++-+|.-|. +.
T Consensus 76 ~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r~ 144 (280)
T cd07945 76 GDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------RD 144 (280)
T ss_pred cHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------cC
Confidence 467999999999999999985554433321 334467889999999999999999999998765552 12
Q ss_pred HHHHHHHHHHHHHH
Q 015517 186 VVKDFADYADFCFK 199 (405)
Q Consensus 186 ~~~~F~~ya~~~~~ 199 (405)
..+.+.++++.+.+
T Consensus 145 ~~~~~~~~~~~~~~ 158 (280)
T cd07945 145 SPDYVFQLVDFLSD 158 (280)
T ss_pred CHHHHHHHHHHHHH
Confidence 24567777777644
No 68
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=69.66 E-value=11 Score=38.38 Aligned_cols=95 Identities=14% Similarity=0.229 Sum_probs=57.1
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCCC---CCCChhHHHHHHHHHHHHHHCCCEE-EEEcCCCCCcHHHHHhcCCCC
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGT---GKVNWKGVAYYNQLINYLLKRGITP-YANLYHYDLPEALEKKYNGLL 182 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~---g~~n~~~l~~y~~~id~l~~~gI~p-~vtL~H~d~P~~l~~~yggw~ 182 (405)
-+|.++.|+++|++ |+||.-..+-++-- |... ..+-+.+.|+.+++.|++. -+++. +++|.
T Consensus 98 t~e~l~~l~~~G~~--rvsiGvqS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli-~GlPg---------- 162 (374)
T PRK05799 98 TEEKLKILKSMGVN--RLSIGLQAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLM-FGLPN---------- 162 (374)
T ss_pred CHHHHHHHHHcCCC--EEEEECccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEee-cCCCC----------
Confidence 46889999999999 55554444433311 2221 2355778999999999974 35653 55662
Q ss_pred ChHHHHHHHHHHHHHHHHcCCCcceEEeccccchhh
Q 015517 183 SKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVA 218 (405)
Q Consensus 183 ~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEp~~~~ 218 (405)
++.+.|.+-.+.+.+.=-+.|..+...-+|+...
T Consensus 163 --qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l 196 (374)
T PRK05799 163 --QTLEDWKETLEKVVELNPEHISCYSLIIEEGTPF 196 (374)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHH
Confidence 2345666666665443225566555555776543
No 69
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=68.22 E-value=25 Score=34.80 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=69.9
Q ss_pred hHHHHHHHHhCCC--CEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCC---CcHHHH------
Q 015517 107 YKEDVDIMANLNF--DAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYD---LPEALE------ 175 (405)
Q Consensus 107 y~eDi~l~~~lG~--~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d---~P~~l~------ 175 (405)
..+-++.+++.|+ +++=+.+.|..-. ++=.+|.+-.---..+|++|+++|+++++.+.-+- .+..-+
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~ 109 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGY 109 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCe
Confidence 4566778888884 5777777785432 22244444444468999999999999988765321 121111
Q ss_pred ---HhcC----------C------CCChHHHHHHHHHHHHHHHHcCCCcc-eEEeccccc
Q 015517 176 ---KKYN----------G------LLSKRVVKDFADYADFCFKTFGDRVK-NWMTFNEPR 215 (405)
Q Consensus 176 ---~~yg----------g------w~~~~~~~~F~~ya~~~~~~fgd~V~-~w~t~NEp~ 215 (405)
++-| | +.|++..+.|.+..+.+....| |+ .|+=+|||.
T Consensus 110 ~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G--vdg~w~D~~E~~ 167 (303)
T cd06592 110 LVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYG--IDSFKFDAGEAS 167 (303)
T ss_pred EEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhC--CcEEEeCCCCcc
Confidence 0001 1 5689999999999988887776 44 588899996
No 70
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=67.90 E-value=2.8 Score=33.61 Aligned_cols=19 Identities=37% Similarity=0.770 Sum_probs=13.9
Q ss_pred HHHHcCC--CcceEEeccc-cc
Q 015517 197 CFKTFGD--RVKNWMTFNE-PR 215 (405)
Q Consensus 197 ~~~~fgd--~V~~w~t~NE-p~ 215 (405)
++++||+ +|.+|.++|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4677886 6999999999 66
No 71
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=67.70 E-value=33 Score=37.54 Aligned_cols=99 Identities=11% Similarity=0.124 Sum_probs=60.4
Q ss_pred ccchHHHH-HHHHhCCCCEEEe-ccccccccc-CCCC-----CCC--hhHHHHHHHHHHHHHHCCCEEEEEcC--CCCC-
Q 015517 104 YHRYKEDV-DIMANLNFDAYRF-SISWSRIFP-YGTG-----KVN--WKGVAYYNQLINYLLKRGITPYANLY--HYDL- 170 (405)
Q Consensus 104 y~~y~eDi-~l~~~lG~~~~Rf-si~Wsri~P-~~~g-----~~n--~~~l~~y~~~id~l~~~gI~p~vtL~--H~d~- 170 (405)
|.-..+.+ +.+++||++++=+ .|....-.- .|.. .++ ....+=++++|++|.++||++|+++- |...
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~ 234 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKD 234 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCc
Confidence 33345564 8899999999988 343321100 0100 111 11134489999999999999999854 5421
Q ss_pred ----------cHHHHH-----hcCCC-------CChHHHHHHHHHHHHHHHHcC
Q 015517 171 ----------PEALEK-----KYNGL-------LSKRVVKDFADYADFCFKTFG 202 (405)
Q Consensus 171 ----------P~~l~~-----~yggw-------~~~~~~~~F~~ya~~~~~~fg 202 (405)
|.+... .+..| .++++.+.+.+-++..+++|+
T Consensus 235 ~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 235 DHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 111110 01112 368889999999999999987
No 72
>PRK14705 glycogen branching enzyme; Provisional
Probab=67.18 E-value=32 Score=40.73 Aligned_cols=94 Identities=16% Similarity=0.183 Sum_probs=57.2
Q ss_pred HHH-HHHHHhCCCCEEEecc--------cccccccCCCCCC--ChhHHHHHHHHHHHHHHCCCEEEEEcC--CCCCcHHH
Q 015517 108 KED-VDIMANLNFDAYRFSI--------SWSRIFPYGTGKV--NWKGVAYYNQLINYLLKRGITPYANLY--HYDLPEAL 174 (405)
Q Consensus 108 ~eD-i~l~~~lG~~~~Rfsi--------~Wsri~P~~~g~~--n~~~l~~y~~~id~l~~~gI~p~vtL~--H~d~P~~l 174 (405)
.+. |+.+|+||++++=+.= +|- -.|.+.-.+ .....+=++.+|++|.++||.+|+++- |+..=.|.
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~ 846 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWA 846 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhh
Confidence 334 6899999999997542 231 111110000 111234489999999999999999853 55211121
Q ss_pred HHhc----------------CC-------CCChHHHHHHHHHHHHHHHHcC
Q 015517 175 EKKY----------------NG-------LLSKRVVKDFADYADFCFKTFG 202 (405)
Q Consensus 175 ~~~y----------------gg-------w~~~~~~~~F~~ya~~~~~~fg 202 (405)
...+ .. +.++++.+.+.+=+...+++|+
T Consensus 847 l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 847 LAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred hhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1111 11 2367788888899999999987
No 73
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=67.13 E-value=8.7 Score=41.34 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=41.7
Q ss_pred ccchHHHHHHHHhCCCCEEEecccccccccC-CC-----CCCC--hhHHHHHHHHHHHHHHCCCEEEEEcC
Q 015517 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPY-GT-----GKVN--WKGVAYYNQLINYLLKRGITPYANLY 166 (405)
Q Consensus 104 y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~-~~-----g~~n--~~~l~~y~~~id~l~~~gI~p~vtL~ 166 (405)
+.-..+-++-+++||++++=++=-...-.-. |. -.+| ....+=++++|++++++||++|+++-
T Consensus 26 ~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3445677899999999999776433321100 10 0111 12345689999999999999999853
No 74
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=65.97 E-value=20 Score=39.11 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=36.6
Q ss_pred cccchHHH-----HHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCC
Q 015517 103 QYHRYKED-----VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYH 167 (405)
Q Consensus 103 ~y~~y~eD-----i~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H 167 (405)
.|.+|.+| ++..++.|++.+|+..+.+.+ +-....|+..++.|....+++.+
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~-------------~~~~~ai~~ak~~G~~~~~~i~y 146 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP-------------RNLETALKAVRKVGAHAQGTLSY 146 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH-------------HHHHHHHHHHHHcCCeEEEEEEE
Confidence 35666655 999999999999999654443 33566677777777776555543
No 75
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=65.71 E-value=19 Score=34.21 Aligned_cols=82 Identities=13% Similarity=-0.017 Sum_probs=55.5
Q ss_pred HHHHHHHHhCCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHH
Q 015517 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRV 186 (405)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~ 186 (405)
+++++.+++.|++.+|++++-+.+.-... +.=.+..++...+.|+.+++.|+++.+.+....-| ...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~~ 144 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KTD 144 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CCC
Confidence 89999999999999999997764211110 11123356778999999999999999999543222 123
Q ss_pred HHHHHHHHHHHHHHcC
Q 015517 187 VKDFADYADFCFKTFG 202 (405)
Q Consensus 187 ~~~F~~ya~~~~~~fg 202 (405)
.+.+.++++.+. .+|
T Consensus 145 ~~~l~~~~~~~~-~~g 159 (265)
T cd03174 145 PEYVLEVAKALE-EAG 159 (265)
T ss_pred HHHHHHHHHHHH-HcC
Confidence 455666666654 344
No 76
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=65.43 E-value=18 Score=36.81 Aligned_cols=60 Identities=17% Similarity=0.066 Sum_probs=48.1
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCC-CCCCChhHHHHHHHHHHHHHHCCCEEEEEcC
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~-~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~ 166 (405)
.++|++.+.+.|++.+|+.++-|.+.-.. -+.-..+.++...+.|+.+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 58999999999999999988777664321 1333456788899999999999999988874
No 77
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=64.97 E-value=27 Score=33.64 Aligned_cols=117 Identities=14% Similarity=0.089 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEcCCCC--------------CcHHHHH----------------hcCC----CCChH-----
Q 015517 145 AYYNQLINYLLKRGITPYANLYHYD--------------LPEALEK----------------KYNG----LLSKR----- 185 (405)
Q Consensus 145 ~~y~~~id~l~~~gI~p~vtL~H~d--------------~P~~l~~----------------~ygg----w~~~~----- 185 (405)
+.++.+|+.-++.|.++++||.=.+ .|.|-.. +.+| ..+|+
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 6689999999999999999985211 1111000 0011 11333
Q ss_pred -HHHHHHHHHHHHHHHcCCC-----cceEEeccccchhhcccCCCCCCCCCCCCcCCCcccCCCCCChHHHHHHHHHHHH
Q 015517 186 -VVKDFADYADFCFKTFGDR-----VKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSH 259 (405)
Q Consensus 186 -~~~~F~~ya~~~~~~fgd~-----V~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAH 259 (405)
..+.| +..+..+||.. |++|.+-|||.+... .|+-=+.. ...+.-+....++.
T Consensus 104 ~y~~ew---V~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~------TH~dVHP~------------~~t~~El~~r~i~~ 162 (239)
T PF12891_consen 104 VYMDEW---VNYLVNKYGNASTNGGVKYYSLDNEPDLWHS------THRDVHPE------------PVTYDELRDRSIEY 162 (239)
T ss_dssp EEHHHH---HHHHHHHH--TTSTTS--EEEESS-GGGHHH------HTTTT--S---------------HHHHHHHHHHH
T ss_pred hHHHHH---HHHHHHHHhccccCCCceEEEecCchHhhcc------cccccCCC------------CCCHHHHHHHHHHH
Confidence 44555 66666777654 999999999997642 22111001 12355566677777
Q ss_pred HHHHHHHHHHhcccCCce-EEEEecCceee
Q 015517 260 AAAVQRYRQKYEQKQKGR-IGILLDFVWYE 288 (405)
Q Consensus 260 A~Av~~~r~~~~~~~~~k-IGi~~~~~~~~ 288 (405)
|+|+ |+..| .++ +|.+....+.|
T Consensus 163 Akai---K~~DP---~a~v~GP~~wgw~~y 186 (239)
T PF12891_consen 163 AKAI---KAADP---DAKVFGPVEWGWCGY 186 (239)
T ss_dssp HHHH---HHH-T---TSEEEEEEE-SHHHH
T ss_pred HHHH---HhhCC---CCeEeechhhcccee
Confidence 7775 45555 444 56665544444
No 78
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=64.93 E-value=10 Score=40.89 Aligned_cols=63 Identities=14% Similarity=0.255 Sum_probs=42.0
Q ss_pred ccchHHHHHHHHhCCCCEEEecccccccc-cCCCC-----CCC--hhHHHHHHHHHHHHHHCCCEEEEEcC
Q 015517 104 YHRYKEDVDIMANLNFDAYRFSISWSRIF-PYGTG-----KVN--WKGVAYYNQLINYLLKRGITPYANLY 166 (405)
Q Consensus 104 y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~-P~~~g-----~~n--~~~l~~y~~~id~l~~~gI~p~vtL~ 166 (405)
+.-..+.++.+++||++++=++=-+..-. ..|.. .+| ....+=++++|+++.++||++++++-
T Consensus 32 l~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 32 LRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred HHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 44456889999999999998765432110 01100 111 11345689999999999999999854
No 79
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=64.44 E-value=32 Score=34.84 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=51.9
Q ss_pred HHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHH
Q 015517 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVV 187 (405)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~ 187 (405)
..-|++|.+.|++-+=.|+ +.|++ -+...++.+.++++++++.|++++|+.. |+-|.. -||. .+.+
T Consensus 19 ~~Yi~~~~~~Gf~~IFtsl----~~~~~---~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~S-~~~l 84 (360)
T COG3589 19 IAYIDRMHKYGFKRIFTSL----LIPEE---DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNIS-LDNL 84 (360)
T ss_pred HHHHHHHHHcCccceeeec----ccCCc---hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCCC-hHHH
Confidence 3447888899998776664 34443 2345789999999999999999999995 887765 3553 3345
Q ss_pred HHHHHH
Q 015517 188 KDFADY 193 (405)
Q Consensus 188 ~~F~~y 193 (405)
+.|.+.
T Consensus 85 ~~f~e~ 90 (360)
T COG3589 85 SRFQEL 90 (360)
T ss_pred HHHHHh
Confidence 555554
No 80
>PRK12568 glycogen branching enzyme; Provisional
Probab=63.45 E-value=26 Score=39.14 Aligned_cols=93 Identities=14% Similarity=0.154 Sum_probs=59.2
Q ss_pred ccchHHH-HHHHHhCCCCEEEecc--------ccc-------ccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcC-
Q 015517 104 YHRYKED-VDIMANLNFDAYRFSI--------SWS-------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY- 166 (405)
Q Consensus 104 y~~y~eD-i~l~~~lG~~~~Rfsi--------~Ws-------ri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~- 166 (405)
|.-..+. |.-+|+||++++-+.= +|- .+.|.- |. .+=++.+|++|.++||++|+++-
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~-G~-----~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARH-GS-----PDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCccc-CC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444444 6899999999986543 231 111111 32 34589999999999999999854
Q ss_pred -CCCC----------cHHHH------HhcCCC-------CChHHHHHHHHHHHHHHHHcC
Q 015517 167 -HYDL----------PEALE------KKYNGL-------LSKRVVKDFADYADFCFKTFG 202 (405)
Q Consensus 167 -H~d~----------P~~l~------~~yggw-------~~~~~~~~F~~ya~~~~~~fg 202 (405)
|+.- +.... ..+..| .++++.+.+.+=++.-+++|+
T Consensus 342 nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 342 AHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred ccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 4321 10000 001123 467888899999999999987
No 81
>PRK09505 malS alpha-amylase; Reviewed
Probab=63.22 E-value=15 Score=40.81 Aligned_cols=60 Identities=23% Similarity=0.302 Sum_probs=41.8
Q ss_pred hHHHHHHHHhCCCCEEEecccccccc-----------c----CCC-----CCCCh--hHHHHHHHHHHHHHHCCCEEEEE
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIF-----------P----YGT-----GKVNW--KGVAYYNQLINYLLKRGITPYAN 164 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~-----------P----~~~-----g~~n~--~~l~~y~~~id~l~~~gI~p~vt 164 (405)
..+-++.+++||++++=++=-...+. | .+. ..+|+ ...+=++++|+++.++||++|++
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45668899999999999886544431 1 010 01222 24566899999999999999998
Q ss_pred cC
Q 015517 165 LY 166 (405)
Q Consensus 165 L~ 166 (405)
+-
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 53
No 82
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=61.30 E-value=46 Score=32.46 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=38.8
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEc
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL 165 (405)
-++|++...+.|++.+|+++..+. ++...+.++.++++|+++.+.+
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~-------------~~~~~~~i~~ak~~G~~v~~~i 138 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND-------------VRNLEVAIKAVKKAGKHVEGAI 138 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh-------------HHHHHHHHHHHHHCCCeEEEEE
Confidence 588999999999999999875544 4567889999999999988766
No 83
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=60.93 E-value=68 Score=32.55 Aligned_cols=88 Identities=19% Similarity=0.277 Sum_probs=64.7
Q ss_pred CCcccccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhc
Q 015517 99 VSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKY 178 (405)
Q Consensus 99 ~a~d~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~y 178 (405)
+|.=||+ |+ =.....+.|++.+|+. | |.+-.+ +....+++.++++||-.=+..+|-.+.+-+.++|
T Consensus 78 VaDiHf~-~r-la~~~~~~g~~k~RIN-------P---GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky 143 (361)
T COG0821 78 VADIHFD-YR-LALEAAECGVDKVRIN-------P---GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKY 143 (361)
T ss_pred EEEeecc-HH-HHHHhhhcCcceEEEC-------C---cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHHh
Confidence 3444665 33 2334457789999864 3 433322 2689999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHH
Q 015517 179 NGLLSKRVVKDFADYADFCFKT 200 (405)
Q Consensus 179 ggw~~~~~~~~F~~ya~~~~~~ 200 (405)
++-..+..++--.++++.+-+.
T Consensus 144 ~~pt~ealveSAl~~a~~~e~l 165 (361)
T COG0821 144 GGPTPEALVESALEHAELLEEL 165 (361)
T ss_pred cCCCHHHHHHHHHHHHHHHHHC
Confidence 8776666777777777776443
No 84
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=60.92 E-value=12 Score=40.09 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=39.2
Q ss_pred hHHHHHHHHhCCCCEEEecccccccc-cCCC-----CCCCh--hHHHHHHHHHHHHHHCCCEEEEEc
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIF-PYGT-----GKVNW--KGVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~-P~~~-----g~~n~--~~l~~y~~~id~l~~~gI~p~vtL 165 (405)
..+-++-+++||++++=++=-.+.-. ..|. -.+|+ ...+=++++|+++.++||++|+++
T Consensus 30 i~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 30 LTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 46668999999999997764222110 0010 02222 234568999999999999999974
No 85
>PRK10785 maltodextrin glucosidase; Provisional
Probab=60.65 E-value=16 Score=39.75 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=40.0
Q ss_pred chHHHHHHHHhCCCCEEEecccccccccCCCC-------CCCh--hHHHHHHHHHHHHHHCCCEEEEEcC
Q 015517 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTG-------KVNW--KGVAYYNQLINYLLKRGITPYANLY 166 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g-------~~n~--~~l~~y~~~id~l~~~gI~p~vtL~ 166 (405)
-..+-++-+++||++++=++=-... |...| .+|+ ...+=++++|+++.++||++|+++-
T Consensus 180 GI~~kLdYL~~LGv~~I~L~Pif~s--~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 180 GISEKLPYLKKLGVTALYLNPIFTA--PSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHHcCCCEEEeCCcccC--CCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3566789999999999988742221 11101 1221 1345589999999999999999854
No 86
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=60.46 E-value=16 Score=35.49 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=46.6
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCC-CCCCChhHHHHHHHHHHHHHHCCCEEEEEcC
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~-~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~ 166 (405)
-.+|++.+.+.|++.+|+.++=|...-.. .+.=-++.++...+++..++++|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 73 HMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 37799999999999999988655432221 1222356789999999999999999999984
No 87
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=60.44 E-value=17 Score=40.74 Aligned_cols=99 Identities=11% Similarity=0.163 Sum_probs=59.1
Q ss_pred ccch-HHHHHHHHhCCCCEEEeccccccccc--CCCC-----CC--ChhHHHHHHHHHHHHHHCCCEEEEEcCC--CCC-
Q 015517 104 YHRY-KEDVDIMANLNFDAYRFSISWSRIFP--YGTG-----KV--NWKGVAYYNQLINYLLKRGITPYANLYH--YDL- 170 (405)
Q Consensus 104 y~~y-~eDi~l~~~lG~~~~Rfsi~Wsri~P--~~~g-----~~--n~~~l~~y~~~id~l~~~gI~p~vtL~H--~d~- 170 (405)
|.-. ++-+..+|+||++++-+.=-...-.- .|.. .+ .....+=++++|++|.++||++++++-+ ..-
T Consensus 249 y~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~ 328 (758)
T PLN02447 249 YREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKN 328 (758)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccccccc
Confidence 4443 33489999999999987643221110 0000 00 1111244899999999999999998653 211
Q ss_pred ------------cHHHHHhcCC----C-------CChHHHHHHHHHHHHHHHHcC
Q 015517 171 ------------PEALEKKYNG----L-------LSKRVVKDFADYADFCFKTFG 202 (405)
Q Consensus 171 ------------P~~l~~~ygg----w-------~~~~~~~~F~~ya~~~~~~fg 202 (405)
+.++.....| | .++++.+.+.+-++..+++|+
T Consensus 329 ~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 329 TLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred ccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1222211011 2 256788888888888888886
No 88
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=60.43 E-value=20 Score=39.89 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=40.0
Q ss_pred HHHHHhCCCCEEEe----cccccccccCC-C----C-------------CCCh---hHHHHHHHHHHHHHHCCCEEEEEc
Q 015517 111 VDIMANLNFDAYRF----SISWSRIFPYG-T----G-------------KVNW---KGVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 111 i~l~~~lG~~~~Rf----si~Wsri~P~~-~----g-------------~~n~---~~l~~y~~~id~l~~~gI~p~vtL 165 (405)
|+-+|++|++++.+ ++.+.+-..+. . | ..++ ..++=+++||++|.++||++|+++
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999993 45555544321 0 1 1122 247779999999999999999974
No 89
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=59.78 E-value=35 Score=33.18 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=48.9
Q ss_pred HHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHH
Q 015517 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVV 187 (405)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~ 187 (405)
.+|++...+.|++.+|+++..+ .++-..++++.++++|+++.+.+.+-. + ...
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~-------------~~~~~~~~i~~ak~~G~~v~~~~~~a~----------~----~~~ 137 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH-------------EFDEALPLIKAIKEKGYEVFFNLMAIS----------G----YSD 137 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc-------------cHHHHHHHHHHHHHCCCeEEEEEEeec----------C----CCH
Confidence 5899999999999999987433 356689999999999999999986421 1 234
Q ss_pred HHHHHHHHHHHH
Q 015517 188 KDFADYADFCFK 199 (405)
Q Consensus 188 ~~F~~ya~~~~~ 199 (405)
+.+.++++.+.+
T Consensus 138 ~~~~~~~~~~~~ 149 (266)
T cd07944 138 EELLELLELVNE 149 (266)
T ss_pred HHHHHHHHHHHh
Confidence 566667766544
No 90
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=59.51 E-value=60 Score=31.95 Aligned_cols=105 Identities=18% Similarity=0.204 Sum_probs=65.5
Q ss_pred hHHHHHHHHhCC--CCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCC---CCcHHHHHh----
Q 015517 107 YKEDVDIMANLN--FDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY---DLPEALEKK---- 177 (405)
Q Consensus 107 y~eDi~l~~~lG--~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~---d~P~~l~~~---- 177 (405)
.++-++.+++.| ++++=+.+.|.+-.-.++=.+|++-.--.+.+|++|+++|+++++.++-+ +.|..-+.+
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~ 105 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGY 105 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCe
Confidence 467788888888 56677777787432111123444333345899999999999998876533 223221110
Q ss_pred ---------c--------CC---CCChHHHHHHHHHHHHHHHHcCCCcc-eEEecccc
Q 015517 178 ---------Y--------NG---LLSKRVVKDFADYADFCFKTFGDRVK-NWMTFNEP 214 (405)
Q Consensus 178 ---------y--------gg---w~~~~~~~~F~~ya~~~~~~fgd~V~-~w~t~NEp 214 (405)
+ .+ +.|++..+.|.+..+.+.+ .| |+ .|+=+||+
T Consensus 106 ~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~ 160 (308)
T cd06593 106 LVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGER 160 (308)
T ss_pred EEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCC
Confidence 0 11 5688888888777776544 44 55 46668887
No 91
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=59.45 E-value=18 Score=41.27 Aligned_cols=55 Identities=24% Similarity=0.214 Sum_probs=41.6
Q ss_pred cchHHHHHHHHhCCCCEEEecccc---------------cccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEc
Q 015517 105 HRYKEDVDIMANLNFDAYRFSISW---------------SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 105 ~~y~eDi~l~~~lG~~~~Rfsi~W---------------sri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL 165 (405)
....+-+..+++||++++=+|=-. .+|-|.- | +.+=+++++++++++||++|+++
T Consensus 20 ~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l-G-----t~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 20 DDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL-G-----GEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC-C-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 446888899999999999776543 3333332 2 34558999999999999999985
No 92
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=59.32 E-value=38 Score=34.35 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=43.9
Q ss_pred HHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEc
Q 015517 111 VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 111 i~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL 165 (405)
++.++++|.+++-+-+-|. |+....+|..-+++..++.++|.+.||..++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5778999999999998887 553244688889999999999999999998864
No 93
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=59.00 E-value=30 Score=34.08 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=60.9
Q ss_pred chHHHHHHHHhCCCCEEEecccccccccCC-CCCCChhHHHHHHHHHHHHHHCCCEEEEEcCC-CCCcHHHHHhcCCCCC
Q 015517 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANLYH-YDLPEALEKKYNGLLS 183 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~-~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H-~d~P~~l~~~yggw~~ 183 (405)
+-.+|++...+.|++.+|+.++=|...-.. -+.=-++.++...++|+.++++|+++..++.. |..| +.|..
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~------~~~~~- 152 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP------YEGEV- 152 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC------CCCCC-
Confidence 358999999999999999998665443221 13334567889999999999999999877653 4444 23333
Q ss_pred hHHHHHHHHHHHHHHH
Q 015517 184 KRVVKDFADYADFCFK 199 (405)
Q Consensus 184 ~~~~~~F~~ya~~~~~ 199 (405)
..+.+.++++.+.+
T Consensus 153 --~~~~~~~~~~~~~~ 166 (287)
T PRK05692 153 --PPEAVADVAERLFA 166 (287)
T ss_pred --CHHHHHHHHHHHHH
Confidence 35677777777654
No 94
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=57.16 E-value=43 Score=35.32 Aligned_cols=93 Identities=11% Similarity=0.012 Sum_probs=59.2
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCc----HHHH---Hh--
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP----EALE---KK-- 177 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P----~~l~---~~-- 177 (405)
-++|++...+.|++.+|+.++-+.+. -....|+.+++.|+++.+++..-+-| ..+. ++
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~-------------n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~ 164 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALNDVR-------------NLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQ 164 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcHH-------------HHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 36677999999999999998665541 25668999999999988877765556 1111 11
Q ss_pred -----------cCCCCChHHHHHHHHHHHHHHHHcCCCcceEEeccccch
Q 015517 178 -----------YNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (405)
Q Consensus 178 -----------yggw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEp~~ 216 (405)
-.|..+|. ...+.++.+-++++ ..-.+.+-|-..+
T Consensus 165 ~~Gad~I~i~Dt~G~l~P~---~v~~lv~alk~~~~-~pi~~H~Hnt~Gl 210 (448)
T PRK12331 165 EMGADSICIKDMAGILTPY---VAYELVKRIKEAVT-VPLEVHTHATSGI 210 (448)
T ss_pred HcCCCEEEEcCCCCCCCHH---HHHHHHHHHHHhcC-CeEEEEecCCCCc
Confidence 14555554 34455555556664 2224556665554
No 95
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=57.16 E-value=35 Score=34.76 Aligned_cols=84 Identities=12% Similarity=-0.005 Sum_probs=60.4
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHCCCEEEEEcCC-CCCcHHHHHhcCCCCCh
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYH-YDLPEALEKKYNGLLSK 184 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H-~d~P~~l~~~yggw~~~ 184 (405)
-++|++...+.|++.+++.++=|...-... +.=-++.++.+.++|+.++++|+++.+++.. |..| +.|-
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p------~~~r--- 193 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCP------IEGP--- 193 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCC------ccCC---
Confidence 689999999999999999986666543321 4445778999999999999999999877753 4433 1222
Q ss_pred HHHHHHHHHHHHHHH
Q 015517 185 RVVKDFADYADFCFK 199 (405)
Q Consensus 185 ~~~~~F~~ya~~~~~ 199 (405)
-.++.+.++++.+.+
T Consensus 194 ~~~~~l~~~~~~~~~ 208 (347)
T PLN02746 194 VPPSKVAYVAKELYD 208 (347)
T ss_pred CCHHHHHHHHHHHHH
Confidence 235566666666543
No 96
>PRK03705 glycogen debranching enzyme; Provisional
Probab=56.21 E-value=27 Score=38.68 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=57.0
Q ss_pred HHHHHhCCCCEEEecccc------------------------cccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcC
Q 015517 111 VDIMANLNFDAYRFSISW------------------------SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (405)
Q Consensus 111 i~l~~~lG~~~~Rfsi~W------------------------sri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~ 166 (405)
|+-+|+||++++=+.=-- -.+.|.- |.-....++=+++||++|.++||++|+++-
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y-gt~~~~~~~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY-ASGPETALDEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc-CCCCcchHHHHHHHHHHHHHCCCEEEEEEc
Confidence 899999999999764211 1222221 221112356689999999999999999843
Q ss_pred --CCC-----CcHH----------H--HH--hcC---C------CCChHHHHHHHHHHHHHHHHcC
Q 015517 167 --HYD-----LPEA----------L--EK--KYN---G------LLSKRVVKDFADYADFCFKTFG 202 (405)
Q Consensus 167 --H~d-----~P~~----------l--~~--~yg---g------w~~~~~~~~F~~ya~~~~~~fg 202 (405)
|-. -|.. . .+ .|. | +.++.+.+.+.+-++..+++||
T Consensus 264 ~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~g 329 (658)
T PRK03705 264 FNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCH 329 (658)
T ss_pred ccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhC
Confidence 431 1211 0 00 011 1 2367788888888888888877
No 97
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=55.55 E-value=53 Score=33.93 Aligned_cols=50 Identities=8% Similarity=0.155 Sum_probs=40.4
Q ss_pred chHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEc
Q 015517 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL 165 (405)
.|++||++.+++|++.|=+.|- .. ..... +....+++.+.+.|.+.++.+
T Consensus 18 dw~~di~~A~~~GIDgFaLNig------~~-d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 18 DWEADIRLAQAAGIDGFALNIG------SS-DSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHcCCCEEEEecc------cC-CcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 4899999999999999999985 11 22333 557889999999999998877
No 98
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=55.50 E-value=34 Score=33.21 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=40.2
Q ss_pred hHHHHHHHHhCCCCEEEeccccc-ccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEc
Q 015517 107 YKEDVDIMANLNFDAYRFSISWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Ws-ri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL 165 (405)
-+|.++.|+++|++.+-++++-+ ++.+.-.+.- ..+.+.+.++.++++||++.+++
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~---s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTH---TYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCC---CHHHHHHHHHHHHHcCCEEEEeE
Confidence 48999999999999999998822 1232211222 34667899999999999866553
No 99
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=55.32 E-value=3.4e+02 Score=30.57 Aligned_cols=199 Identities=16% Similarity=0.135 Sum_probs=107.5
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHC-CCEEEEEcCCCCC-----cHHHHH----hcCCCC----------------
Q 015517 129 SRIFPYGTGKVNWKGVAYYNQLINYLLKR-GITPYANLYHYDL-----PEALEK----KYNGLL---------------- 182 (405)
Q Consensus 129 sri~P~~~g~~n~~~l~~y~~~id~l~~~-gI~p~vtL~H~d~-----P~~l~~----~yggw~---------------- 182 (405)
.|+.|...|-++.+-++-+++++|.++++ |-+.++=|.|-+- +.|... .-++|.
T Consensus 459 g~~~~~~~~~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p 538 (765)
T PRK08255 459 GRITPGCPGLYNDEQEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVP 538 (765)
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCC
Confidence 45555544778999999999999999999 6999999999322 111100 002221
Q ss_pred -------ChHHHHHHHHHHHHHHHHcC-CCcceEEeccccchhhcccCCCCCC-CCCC--CCcCCCcccCCCCCChHHHH
Q 015517 183 -------SKRVVKDFADYADFCFKTFG-DRVKNWMTFNEPRVVAALGYDNGFF-APGR--CSKAFGNCTVGNSATEPYIV 251 (405)
Q Consensus 183 -------~~~~~~~F~~ya~~~~~~fg-d~V~~w~t~NEp~~~~~~gy~~g~~-~Pg~--~~~~~~~~~~~~~~~~~~~~ 251 (405)
=.++++.|++=|+.+.+ -| |-| .+.+-.||+...| .|-. +. +.- |.|
T Consensus 539 ~~mt~~eI~~~i~~f~~aA~~a~~-aGfDgv---------eih~ahGyLl~qFlsp~~N~Rt----D~y-GGs------- 596 (765)
T PRK08255 539 REMTRADMDRVRDDFVAAARRAAE-AGFDWL---------ELHCAHGYLLSSFISPLTNQRT----DEY-GGS------- 596 (765)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHH-cCCCEE---------EEecccchHHHHhcCCCCCCCC----CCC-CCC-------
Confidence 12378888887776544 45 333 2345667776543 2321 11 111 111
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCceEEEEecCceeecCCCCHHH-HHHHHHHHHhhcccccchhhcCcC----------
Q 015517 252 AHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYEPLTRSKAD-NYAAQRARDFHVGWFIHPIVYGEY---------- 320 (405)
Q Consensus 252 ~hn~llAHA~Av~~~r~~~~~~~~~kIGi~~~~~~~~P~s~~~~D-~~AA~~~~~~~~~~flDpi~~G~Y---------- 320 (405)
+-|-+.--.++++.+|+..+. +..||+-++...+.+...+++| +..++...+. .--++++- .|.+
T Consensus 597 lenR~r~~~eiv~~ir~~~~~--~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~-g~d~i~vs-~g~~~~~~~~~~~~ 672 (765)
T PRK08255 597 LENRLRYPLEVFRAVRAVWPA--EKPMSVRISAHDWVEGGNTPDDAVEIARAFKAA-GADLIDVS-SGQVSKDEKPVYGR 672 (765)
T ss_pred HHHHhHHHHHHHHHHHHhcCC--CCeeEEEEccccccCCCCCHHHHHHHHHHHHhc-CCcEEEeC-CCCCCcCCCCCcCc
Confidence 234455555677888876432 4579988887555444445554 3444443332 11233331 2322
Q ss_pred --ChhhHhHhhcc--CC------CCCHHHHHHh-c-CCCcEEEec
Q 015517 321 --PKTMQNIVGNR--LP------KFTKEEVKMV-K-GSIDFVGIN 353 (405)
Q Consensus 321 --P~~~~~~l~~~--lp------~ft~ed~~~i-k-gs~DFiGiN 353 (405)
...+.+.+++. .| ..++++.+.+ + +.+|++++.
T Consensus 673 ~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~g 717 (765)
T PRK08255 673 MYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALA 717 (765)
T ss_pred cccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEc
Confidence 11222233332 23 2366666655 3 789999885
No 100
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=55.30 E-value=22 Score=40.20 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=43.9
Q ss_pred cchHHHHHHHHhCCCCEEEecccccccccC--CC-----CCCC--hhHHHHHHHHHHHHHHCCCEEEEEc--CCCC
Q 015517 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPY--GT-----GKVN--WKGVAYYNQLINYLLKRGITPYANL--YHYD 169 (405)
Q Consensus 105 ~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~--~~-----g~~n--~~~l~~y~~~id~l~~~gI~p~vtL--~H~d 169 (405)
....+-+.-+++||++++=+|=-+.-.-.. |. ..+| ..+.+=+++++++++++||.+|+++ .|..
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 346888999999999999877544321110 10 1112 1135568999999999999999985 4643
No 101
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=54.79 E-value=66 Score=32.06 Aligned_cols=109 Identities=16% Similarity=0.198 Sum_probs=69.8
Q ss_pred HHHHHHHHhCCCC-EEEecc-ccc-cccc-CCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCC
Q 015517 108 KEDVDIMANLNFD-AYRFSI-SWS-RIFP-YGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLS 183 (405)
Q Consensus 108 ~eDi~l~~~lG~~-~~Rfsi-~Ws-ri~P-~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~ 183 (405)
+|.+++|+++|++ .+=+++ +-+ ++.- .-....+ .+-+.+.++.++++||.+.+.+. +++| +...
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P--------~~se 184 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGST---FEDFIRAAELARKYGAGVKAYLL-FKPP--------FLSE 184 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCC---HHHHHHHHHHHHHcCCcEEEEEE-ecCC--------CCCh
Confidence 7889999999998 466655 222 2221 1001123 34578999999999999777764 3444 2222
Q ss_pred hHHHHHHHHHHHHHHHHcCCCcceEEeccccchhhcccCCCCCCCC
Q 015517 184 KRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFAP 229 (405)
Q Consensus 184 ~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEp~~~~~~gy~~g~~~P 229 (405)
.++++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.+.|
T Consensus 185 ~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 185 KEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 3678888888887765 45788877776677654444466666654
No 102
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=54.72 E-value=57 Score=32.86 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=49.8
Q ss_pred HHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCc
Q 015517 111 VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 171 (405)
Q Consensus 111 i~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P 171 (405)
++.+|++|.+++.|=+-|. |+++..+|..-.++.+++.++|++.+|--++=+..+|.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 5889999999999998887 565456899999999999999999999988877666554
No 103
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=54.63 E-value=59 Score=32.84 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=50.8
Q ss_pred HHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCc
Q 015517 110 DVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 171 (405)
Q Consensus 110 Di~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P 171 (405)
+++.+|++|.+++.|=+-|. |+++-.+|..-.++.+++.++|++.+|--++=+..+|.+
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~ 170 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDER 170 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCc
Confidence 46889999999999998887 565466899999999999999999999999988777554
No 104
>PRK14706 glycogen branching enzyme; Provisional
Probab=53.82 E-value=74 Score=35.13 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=53.7
Q ss_pred HHHHhCCCCEEEecccccccccCC-C-C-------CCC--hhHHHHHHHHHHHHHHCCCEEEEEcC--CCC---------
Q 015517 112 DIMANLNFDAYRFSISWSRIFPYG-T-G-------KVN--WKGVAYYNQLINYLLKRGITPYANLY--HYD--------- 169 (405)
Q Consensus 112 ~l~~~lG~~~~Rfsi~Wsri~P~~-~-g-------~~n--~~~l~~y~~~id~l~~~gI~p~vtL~--H~d--------- 169 (405)
+.+|+||++++-+.=.=. .|.. . | .++ ....+=++.+|++|.++||++|+++- |+.
T Consensus 175 ~ylk~lG~t~velmPv~e--~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~ 252 (639)
T PRK14706 175 EYVTYMGYTHVELLGVME--HPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHF 252 (639)
T ss_pred HHHHHcCCCEEEccchhc--CCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhcc
Confidence 678999999987542100 1110 0 1 011 11234489999999999999999843 532
Q ss_pred --CcHH-HHHhcC----CC-------CChHHHHHHHHHHHHHHHHcC
Q 015517 170 --LPEA-LEKKYN----GL-------LSKRVVKDFADYADFCFKTFG 202 (405)
Q Consensus 170 --~P~~-l~~~yg----gw-------~~~~~~~~F~~ya~~~~~~fg 202 (405)
.|.+ ..+... .| .++++.+.+.+=++..+++|+
T Consensus 253 dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 253 DGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 000001 12 267888888999999999987
No 105
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=53.66 E-value=46 Score=33.91 Aligned_cols=60 Identities=18% Similarity=0.109 Sum_probs=46.9
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCC-CCCCChhHHHHHHHHHHHHHHCCCEEEEEcC
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~-~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~ 166 (405)
-++|++.+.+.|++.+|+.++-|.+.-.. -+.=..+.++...+.|+.++++|+++.+++-
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e 134 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGE 134 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec
Confidence 38999999999999999999877543221 1223456788899999999999999887764
No 106
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=53.54 E-value=50 Score=34.63 Aligned_cols=107 Identities=13% Similarity=0.114 Sum_probs=64.2
Q ss_pred hHHHHHHHHhCCCCEEEecc-cccccccCCCCCCChhHHHHHHHHHHHHHHCC-CEEEEEcCCCCCcHHHHHhcCCCCCh
Q 015517 107 YKEDVDIMANLNFDAYRFSI-SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRG-ITPYANLYHYDLPEALEKKYNGLLSK 184 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi-~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~g-I~p~vtL~H~d~P~~l~~~yggw~~~ 184 (405)
-+|.+++|+++|+|-+-+++ +-+.-.-+.-|... ..+-..+.|+.+++.| +.+.++|. +++|. +
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg---------q-- 227 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKD--DREEVLARLEELVARDRAAVVCDLI-FGLPG---------Q-- 227 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCC---------C--
Confidence 47889999999999877776 33221111112221 1234567889999999 67777775 56662 1
Q ss_pred HHHHHHHHHHHHHHHHcCCCcceEEeccccchhhcccCCCCCCC
Q 015517 185 RVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFA 228 (405)
Q Consensus 185 ~~~~~F~~ya~~~~~~fgd~V~~w~t~NEp~~~~~~gy~~g~~~ 228 (405)
+.+.|.+=.+.+.+-=-+.|..+...-||......-+..|..+
T Consensus 228 -T~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 228 -TPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred -CHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 2344444455544432367888888888876544334445443
No 107
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=52.80 E-value=83 Score=32.15 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=57.4
Q ss_pred HhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHH
Q 015517 115 ANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYA 194 (405)
Q Consensus 115 ~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya 194 (405)
.+.|++.+|+. | |.+-. --+..+.+++.++++|+-.=+..+|-.++..+.++||+-..+..++--.+++
T Consensus 98 ~~~G~~~iRIN-------P---GNig~-~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~ 166 (360)
T PRK00366 98 AEAGADALRIN-------P---GNIGK-RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHA 166 (360)
T ss_pred HHhCCCEEEEC-------C---CCCCc-hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHH
Confidence 37899999754 3 44421 0256899999999999999999999999999999996545455777777777
Q ss_pred HHHHHH
Q 015517 195 DFCFKT 200 (405)
Q Consensus 195 ~~~~~~ 200 (405)
+.|-+.
T Consensus 167 ~~le~~ 172 (360)
T PRK00366 167 KILEEL 172 (360)
T ss_pred HHHHHC
Confidence 776443
No 108
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=52.25 E-value=17 Score=42.99 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=37.9
Q ss_pred HHHHHHHhCCCCEEEeccccccccc-----C------CCC-----CCCh--h--HHHHHHHHHHHHHHCCCEEEEEc
Q 015517 109 EDVDIMANLNFDAYRFSISWSRIFP-----Y------GTG-----KVNW--K--GVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 109 eDi~l~~~lG~~~~Rfsi~Wsri~P-----~------~~g-----~~n~--~--~l~~y~~~id~l~~~gI~p~vtL 165 (405)
+.|+-+|+||++++=+.=-.....- . |.. .+|. . .++=+++||++|.++||++|++.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 6688999999999976543222110 0 000 1111 1 45668999999999999999984
No 109
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=52.17 E-value=1.5e+02 Score=29.96 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=41.8
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEc--CCCCCcHHH
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL--YHYDLPEAL 174 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL--~H~d~P~~l 174 (405)
..+|++...+.|++.+|+....+.. +-..+.|+.+++.|+++.+.+ .|.-.|..+
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~-------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l 145 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEA-------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKL 145 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchH-------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHH
Confidence 3689999999999999988754433 225789999999999998877 344444443
No 110
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=51.43 E-value=52 Score=33.20 Aligned_cols=70 Identities=16% Similarity=0.347 Sum_probs=43.7
Q ss_pred HHHHHHHHHCCCEEEEEcCCC-CCcHHHH--HhcCCCCChHHHHHHHHHHHHHHHHcCCCcc-eEEeccccchhhcc
Q 015517 148 NQLINYLLKRGITPYANLYHY-DLPEALE--KKYNGLLSKRVVKDFADYADFCFKTFGDRVK-NWMTFNEPRVVAAL 220 (405)
Q Consensus 148 ~~~id~l~~~gI~p~vtL~H~-d~P~~l~--~~yggw~~~~~~~~F~~ya~~~~~~fgd~V~-~w~t~NEp~~~~~~ 220 (405)
+.++++|++.|++.++.+.-+ ..-..+. ..+..|.|++..+.|.+..+.+.+ .| |+ .|+=+|||.++...
T Consensus 67 ~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~G--v~~~W~DmnEp~~~~~~ 140 (332)
T cd06601 67 KEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IG--LEFVWQDMTTPAIMPSY 140 (332)
T ss_pred HHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CC--CceeecCCCCcccccCC
Confidence 689999999999988766421 1000000 012346788888877665544332 23 43 69999999977543
No 111
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=51.03 E-value=55 Score=33.52 Aligned_cols=59 Identities=19% Similarity=0.121 Sum_probs=47.6
Q ss_pred HHHHHHHHhCCCCEEEecccccccccCC-CCCCChhHHHHHHHHHHHHHHCCCEEEEEcC
Q 015517 108 KEDVDIMANLNFDAYRFSISWSRIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (405)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~-~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~ 166 (405)
++|++.+.+.|++.+|++++-|.+.=.. -+.--++.++...+.|+.+++.|+++.++.-
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e 137 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE 137 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 8899999999999999999777653221 1333467888999999999999999998753
No 112
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=50.15 E-value=1.3e+02 Score=28.86 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcC
Q 015517 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (405)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~ 166 (405)
.+|++..++.|++.+|+.++.+.+. -..+.++.++++|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~-------------~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEAD-------------VSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHH-------------HHHHHHHHHHHCCCeEEEEEE
Confidence 6999999999999999987666541 257789999999999998883
No 113
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=49.32 E-value=78 Score=31.77 Aligned_cols=71 Identities=17% Similarity=0.131 Sum_probs=48.4
Q ss_pred HHHHHHHHHCCCEEEEEcCCCC-----CcHHHHHh------------------------cCCCCChHHHHHHHHHHHHHH
Q 015517 148 NQLINYLLKRGITPYANLYHYD-----LPEALEKK------------------------YNGLLSKRVVKDFADYADFCF 198 (405)
Q Consensus 148 ~~~id~l~~~gI~p~vtL~H~d-----~P~~l~~~------------------------yggw~~~~~~~~F~~ya~~~~ 198 (405)
+.+|++|+++|++.++.++-+- .|..-+.+ +-.+.|++.++.|.+..+.+.
T Consensus 67 ~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06603 67 EKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDK 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHh
Confidence 7799999999999988876442 22221111 013678999999988888776
Q ss_pred HHcCC-CcceEEeccccchhh
Q 015517 199 KTFGD-RVKNWMTFNEPRVVA 218 (405)
Q Consensus 199 ~~fgd-~V~~w~t~NEp~~~~ 218 (405)
...+. -.-.|+=+|||.++.
T Consensus 147 ~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 147 YKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hcccCCCceEEeccCCccccC
Confidence 54332 345799999998653
No 114
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=48.92 E-value=68 Score=35.01 Aligned_cols=94 Identities=14% Similarity=0.115 Sum_probs=60.0
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCc----HHHHHh-----
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP----EALEKK----- 177 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P----~~l~~~----- 177 (405)
.++|++.+++.|++.+|+..+.+.+ +-....|+.++++|+++.+++..-+.| ..+.+.
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~ 159 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP-------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELL 159 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 3556899999999999999766654 235778888899999888887655555 221110
Q ss_pred -----------cCCCCChHHHHHHHHHHHHHHHHcCCCcceEEeccccchh
Q 015517 178 -----------YNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVV 217 (405)
Q Consensus 178 -----------yggw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEp~~~ 217 (405)
-.|...|. ...+..+.+-++++ ..-...+-|-..+-
T Consensus 160 ~~Gad~I~i~Dt~G~~~P~---~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla 206 (582)
T TIGR01108 160 EMGVDSICIKDMAGILTPK---AAYELVSALKKRFG-LPVHLHSHATTGMA 206 (582)
T ss_pred HcCCCEEEECCCCCCcCHH---HHHHHHHHHHHhCC-CceEEEecCCCCcH
Confidence 14455554 44555555566665 22246666766553
No 115
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=48.79 E-value=56 Score=31.80 Aligned_cols=81 Identities=10% Similarity=0.016 Sum_probs=55.4
Q ss_pred HHHHHHHHhCCCCEEEecccccccccCC-CCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHH
Q 015517 108 KEDVDIMANLNFDAYRFSISWSRIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRV 186 (405)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~-~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~ 186 (405)
+.+++.+++.|++.+|+.++=|...-.. .+.--++.++...+.++.+++.|+++.++.-++ . .+. +..
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~------~---d~~--~~~ 149 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF------F---DGY--KAN 149 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec------c---ccC--CCC
Confidence 3689999999999999987655442221 133346678899999999999999998876554 1 111 123
Q ss_pred HHHHHHHHHHHHH
Q 015517 187 VKDFADYADFCFK 199 (405)
Q Consensus 187 ~~~F~~ya~~~~~ 199 (405)
.+.+.++++.+.+
T Consensus 150 ~~~~~~~~~~~~~ 162 (273)
T cd07941 150 PEYALATLKAAAE 162 (273)
T ss_pred HHHHHHHHHHHHh
Confidence 4566667666644
No 116
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=48.69 E-value=85 Score=31.62 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=45.5
Q ss_pred HHHHHHHHHCCCEEEEEcCCCCCc--------HHHHH---h----------c-----------CCCCChHHHHHHHHHHH
Q 015517 148 NQLINYLLKRGITPYANLYHYDLP--------EALEK---K----------Y-----------NGLLSKRVVKDFADYAD 195 (405)
Q Consensus 148 ~~~id~l~~~gI~p~vtL~H~d~P--------~~l~~---~----------y-----------ggw~~~~~~~~F~~ya~ 195 (405)
+++|++|+++|++.++.++-+-.+ ..-+. . | -.+.|++..+.|.+..+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 889999999999988877544222 11110 0 1 12668888888887777
Q ss_pred HHHHHcCCCcceEEeccccch
Q 015517 196 FCFKTFGDRVKNWMTFNEPRV 216 (405)
Q Consensus 196 ~~~~~fgd~V~~w~t~NEp~~ 216 (405)
.+....|= --.|+=+|||..
T Consensus 149 ~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 149 DFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHhcCCC-cEEEecCCCCch
Confidence 76666552 246889999964
No 117
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=48.32 E-value=40 Score=34.07 Aligned_cols=92 Identities=15% Similarity=0.240 Sum_probs=53.3
Q ss_pred hHHHHHHHHhCCCCEEEecc-ccc-ccccCCCCCCChhHHHHHHHHHHHHHHCCCEEE-EEcCCCCCcHHHHHhcCCCCC
Q 015517 107 YKEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLLS 183 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~-vtL~H~d~P~~l~~~yggw~~ 183 (405)
-++.++.|+++|++.+-+++ +-+ ++...- |.. ...+-+.+.|+.+++.|++++ ++|. +++|. +
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS~~~~~l~~l-gR~--~~~~~~~~ai~~l~~~G~~~v~~dli-~GlPg---------q- 164 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQSFRDDKLLFL-GRQ--HSAKNIAPAIETALKSGIENISLDLM-YGLPL---------Q- 164 (360)
T ss_pred CHHHHHHHHHcCCCEEEEecccCChHHHHHh-CCC--CCHHHHHHHHHHHHHcCCCeEEEecc-CCCCC---------C-
Confidence 37889999999999666665 332 232221 321 123557889999999999754 5553 56662 2
Q ss_pred hHHHHHHHHHHHHHHHHcC-CCcceEEeccccc
Q 015517 184 KRVVKDFADYADFCFKTFG-DRVKNWMTFNEPR 215 (405)
Q Consensus 184 ~~~~~~F~~ya~~~~~~fg-d~V~~w~t~NEp~ 215 (405)
+.+.+.+-.+.+.+ ++ +.+..+...=||.
T Consensus 165 --t~~~~~~~l~~~~~-l~~~~is~y~l~~~~g 194 (360)
T TIGR00539 165 --TLNSLKEELKLAKE-LPINHLSAYALSVEPN 194 (360)
T ss_pred --CHHHHHHHHHHHHc-cCCCEEEeecceEcCC
Confidence 24455555555443 33 3454444444444
No 118
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=48.18 E-value=56 Score=30.86 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=43.5
Q ss_pred cccchHHHHHHHHhCCCCEEEecccccccccCCC--CCCChhHHHHHHHHHHHHHHCCCEEEEE-cCCCCCc
Q 015517 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT--GKVNWKGVAYYNQLINYLLKRGITPYAN-LYHYDLP 171 (405)
Q Consensus 103 ~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~--g~~n~~~l~~y~~~id~l~~~gI~p~vt-L~H~d~P 171 (405)
+-+++++=|++++++|.+.+|+...+. |... .+.....++..+++.+.+.+.||+..+= +++++.|
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 345677889999999999998643221 1110 1122344567888888999999998874 3445444
No 119
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=48.02 E-value=1.3e+02 Score=30.67 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=65.3
Q ss_pred CCCcccccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHh
Q 015517 98 DVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKK 177 (405)
Q Consensus 98 ~~a~d~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~ 177 (405)
=+|.=||+ |+--+. ..+.|++.+|+. + |.+-. -+..+.+++.++++|+-.=+..+|-.++.-+.++
T Consensus 75 lVADIHFd-~~lAl~-a~~~g~dkiRIN---------P-GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~k 140 (346)
T TIGR00612 75 LVADIHFD-YRLAAL-AMAKGVAKVRIN---------P-GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEK 140 (346)
T ss_pred EEEeeCCC-cHHHHH-HHHhccCeEEEC---------C-CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHH
Confidence 34555665 444333 346799999975 2 43422 3678999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHH
Q 015517 178 YNGLLSKRVVKDFADYADFCFKT 200 (405)
Q Consensus 178 yggw~~~~~~~~F~~ya~~~~~~ 200 (405)
||+-+.+..++--.++++.|-+.
T Consensus 141 yg~~t~eamveSAl~~v~~le~~ 163 (346)
T TIGR00612 141 YGDATAEAMVQSALEEAAILEKL 163 (346)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHC
Confidence 87655556777777777776443
No 120
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=47.73 E-value=1.2e+02 Score=30.09 Aligned_cols=68 Identities=21% Similarity=0.179 Sum_probs=44.9
Q ss_pred HHHHHHHHHHCCCEEEEEcCCC---CCcHHHH--Hh-c-------------------C---CCCChHHHHHHHHHHHHHH
Q 015517 147 YNQLINYLLKRGITPYANLYHY---DLPEALE--KK-Y-------------------N---GLLSKRVVKDFADYADFCF 198 (405)
Q Consensus 147 y~~~id~l~~~gI~p~vtL~H~---d~P~~l~--~~-y-------------------g---gw~~~~~~~~F~~ya~~~~ 198 (405)
-+++|++|+++|++.++.++-+ +.|..-+ ++ | + .++|++..+.|.+..+.+
T Consensus 72 p~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~- 150 (317)
T cd06598 72 PAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL- 150 (317)
T ss_pred HHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-
Confidence 3789999999999999887643 3343211 10 1 1 256888888888777665
Q ss_pred HHcCCCcc-eEEeccccchh
Q 015517 199 KTFGDRVK-NWMTFNEPRVV 217 (405)
Q Consensus 199 ~~fgd~V~-~w~t~NEp~~~ 217 (405)
...| |. .|+=+|||...
T Consensus 151 ~~~G--vdg~w~D~~Ep~~~ 168 (317)
T cd06598 151 IDQG--VTGWWGDLGEPEVH 168 (317)
T ss_pred hhCC--ccEEEecCCCcccc
Confidence 3333 54 58899999654
No 121
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=46.96 E-value=1.4e+02 Score=29.66 Aligned_cols=70 Identities=19% Similarity=0.166 Sum_probs=45.8
Q ss_pred HHHHHHHHHHCCCEEEEEcCCCC-----CcHHHHHh------------------------cCCCCChHHHHHHHHHHHHH
Q 015517 147 YNQLINYLLKRGITPYANLYHYD-----LPEALEKK------------------------YNGLLSKRVVKDFADYADFC 197 (405)
Q Consensus 147 y~~~id~l~~~gI~p~vtL~H~d-----~P~~l~~~------------------------yggw~~~~~~~~F~~ya~~~ 197 (405)
-+++|++|+++|++.++.++-+- .|...+.. +-.|.||+..+.|.+..+.+
T Consensus 66 p~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~ 145 (317)
T cd06600 66 PKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEW 145 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHH
Confidence 36899999999999887765321 12221110 11367899999998887776
Q ss_pred HHHcCCCcceEEeccccchh
Q 015517 198 FKTFGDRVKNWMTFNEPRVV 217 (405)
Q Consensus 198 ~~~fgd~V~~w~t~NEp~~~ 217 (405)
....|= .-.|+=+|||..+
T Consensus 146 ~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 146 LNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred hhcCCC-ceEEeeCCCCccH
Confidence 655542 2368999999643
No 122
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=46.73 E-value=76 Score=35.88 Aligned_cols=101 Identities=19% Similarity=0.243 Sum_probs=62.7
Q ss_pred CCCCEEEeccc-ccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCC---CCCcHHHH--Hh-------------
Q 015517 117 LNFDAYRFSIS-WSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYH---YDLPEALE--KK------------- 177 (405)
Q Consensus 117 lG~~~~Rfsi~-Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H---~d~P~~l~--~~------------- 177 (405)
+=++++++.+. |.+ ..+.=.+|+.-.---+.||+.|+++||+.++-+.. -|.|+.=+ ++
T Consensus 294 IP~d~~~lD~~~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~ 371 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQ 371 (772)
T ss_pred CcceEEEEeehhhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEee
Confidence 55789999995 886 11212233322222369999999999999998763 23443211 11
Q ss_pred ---------cCCCCChHHHHHHHHHHHHHHHHcCCCcceEEeccccchhhcc
Q 015517 178 ---------YNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAAL 220 (405)
Q Consensus 178 ---------yggw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEp~~~~~~ 220 (405)
+-.+.||+.++.|.+....-...+| -.-+|.=+|||......
T Consensus 372 ~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 372 ADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDGD 422 (772)
T ss_pred ecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCcccccc
Confidence 0126689999888873333333343 24479999999876543
No 123
>PLN02960 alpha-amylase
Probab=46.27 E-value=38 Score=38.62 Aligned_cols=94 Identities=6% Similarity=0.081 Sum_probs=59.9
Q ss_pred cccchHHH-HHHHHhCCCCEEEeccc--------c-------cccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEc-
Q 015517 103 QYHRYKED-VDIMANLNFDAYRFSIS--------W-------SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL- 165 (405)
Q Consensus 103 ~y~~y~eD-i~l~~~lG~~~~Rfsi~--------W-------sri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL- 165 (405)
-|.-..+. |..+++||++++-+.=- | -.+.|.- |. .+=++.+|++|.++||++|+++
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y-Gt-----p~dfk~LVd~aH~~GI~VILDvV 487 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF-GT-----PDDFKRLVDEAHGLGLLVFLDIV 487 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc-CC-----HHHHHHHHHHHHHCCCEEEEEec
Confidence 45555544 89999999999886521 1 1111110 22 3448999999999999999986
Q ss_pred -CCCCC--cHHH--HHh-------------cCCC-------CChHHHHHHHHHHHHHHHHcC
Q 015517 166 -YHYDL--PEAL--EKK-------------YNGL-------LSKRVVKDFADYADFCFKTFG 202 (405)
Q Consensus 166 -~H~d~--P~~l--~~~-------------yggw-------~~~~~~~~F~~ya~~~~~~fg 202 (405)
.|+.. +..| .+. +..| .++++.+.+.+-++..+++|+
T Consensus 488 ~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 488 HSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 35421 1111 000 0113 357788899999999999987
No 124
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=45.58 E-value=82 Score=32.86 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=38.7
Q ss_pred cccchHHHH-----HHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCC
Q 015517 103 QYHRYKEDV-----DIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYH 167 (405)
Q Consensus 103 ~y~~y~eDi-----~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H 167 (405)
.|.+|.+|+ ++..+-|++.||+- ...|. ++-.+.-|+..++.|.....+++-
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRiF-----------DAlND--~RNl~~ai~a~kk~G~h~q~~i~Y 147 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRIF-----------DALND--VRNLKTAIKAAKKHGAHVQGTISY 147 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEec-----------hhccc--hhHHHHHHHHHHhcCceeEEEEEe
Confidence 477788885 78889999999964 22332 344677888899999988888863
No 125
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=45.10 E-value=65 Score=31.14 Aligned_cols=79 Identities=15% Similarity=0.062 Sum_probs=53.8
Q ss_pred HHHHHHHHhCC----CCEEEecccccccc--cCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCC
Q 015517 108 KEDVDIMANLN----FDAYRFSISWSRIF--PYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGL 181 (405)
Q Consensus 108 ~eDi~l~~~lG----~~~~Rfsi~Wsri~--P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw 181 (405)
.+|++...+.| ++.+|+.++.+.+. -+- +.=-.+.++-..+.++.+++.|+++.+++.+ .+-
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~ 139 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKL-KKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATR 139 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCC
Confidence 78999999999 99999987665443 221 2223356788899999999999998765532 222
Q ss_pred CChHHHHHHHHHHHHHHHHcC
Q 015517 182 LSKRVVKDFADYADFCFKTFG 202 (405)
Q Consensus 182 ~~~~~~~~F~~ya~~~~~~fg 202 (405)
...+.+.+.++.+.+ +|
T Consensus 140 ---~~~~~~~~~~~~~~~-~G 156 (268)
T cd07940 140 ---TDLDFLIEVVEAAIE-AG 156 (268)
T ss_pred ---CCHHHHHHHHHHHHH-cC
Confidence 235566777766643 44
No 126
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=44.03 E-value=74 Score=33.42 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCCEEEecc-cccc-cccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCc
Q 015517 108 KEDVDIMANLNFDAYRFSI-SWSR-IFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 171 (405)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi-~Wsr-i~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P 171 (405)
+|.+++|+++|++.+-+++ +-+. +.-.-....+ ++.+.+.++.++++||.+.+++- +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 6778999999999888887 4332 2211101123 35678999999999999888774 3445
No 127
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=43.99 E-value=89 Score=30.51 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=60.9
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCC-CCCCChhHHHHHHHHHHHHHHCCCEEEEEcCC-CCCcHHHHHhcCCCCCh
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANLYH-YDLPEALEKKYNGLLSK 184 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~-~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H-~d~P~~l~~~yggw~~~ 184 (405)
-++|++...+.|++.+++.++=|...-.. -+.--.+.++...+.++.++++|+++.+++.. |+.| +.|-
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~------~~~~--- 145 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP------YEGE--- 145 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC------CCCC---
Confidence 37899999999999999998666542221 13333677889999999999999999988762 4444 1232
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 015517 185 RVVKDFADYADFCFKTFG 202 (405)
Q Consensus 185 ~~~~~F~~ya~~~~~~fg 202 (405)
-..+.+.++++.+.+ .|
T Consensus 146 ~~~~~~~~~~~~~~~-~G 162 (274)
T cd07938 146 VPPERVAEVAERLLD-LG 162 (274)
T ss_pred CCHHHHHHHHHHHHH-cC
Confidence 246677777777654 44
No 128
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=43.04 E-value=60 Score=39.80 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=45.1
Q ss_pred ccchHHHHHHHHhCCCCEEEecccccccccC--CC-----CCCChh--HHHHHHHHHHHHHHCCCEEEEEc--CCCC
Q 015517 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPY--GT-----GKVNWK--GVAYYNQLINYLLKRGITPYANL--YHYD 169 (405)
Q Consensus 104 y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~--~~-----g~~n~~--~l~~y~~~id~l~~~gI~p~vtL--~H~d 169 (405)
+....+-+..+++||++++=+|=-+.-.--. |. ..+|++ +.+=+++++++|+++||++|+++ +|..
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 4457778899999999999877655421000 10 122222 45568999999999999999985 4653
No 129
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=42.72 E-value=64 Score=35.95 Aligned_cols=92 Identities=16% Similarity=0.162 Sum_probs=55.6
Q ss_pred HHHHHhCCCCEEEeccccccccc-----------CCC-----CCCChh-----HHHHHHHHHHHHHHCCCEEEEEcC--C
Q 015517 111 VDIMANLNFDAYRFSISWSRIFP-----------YGT-----GKVNWK-----GVAYYNQLINYLLKRGITPYANLY--H 167 (405)
Q Consensus 111 i~l~~~lG~~~~Rfsi~Wsri~P-----------~~~-----g~~n~~-----~l~~y~~~id~l~~~gI~p~vtL~--H 167 (405)
|+-+|+||++++=+.=--.-... .|. -.+|.. .++=+++||++|.++||++|+++- |
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NH 269 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNH 269 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCC
Confidence 78999999999986542211100 010 112221 245689999999999999999853 4
Q ss_pred CC---------------CcHHHHH---------hcCCC------CChHHHHHHHHHHHHHHHHcC
Q 015517 168 YD---------------LPEALEK---------KYNGL------LSKRVVKDFADYADFCFKTFG 202 (405)
Q Consensus 168 ~d---------------~P~~l~~---------~yggw------~~~~~~~~F~~ya~~~~~~fg 202 (405)
.. -+.|... .+.|| .++.+.+.+.+-++..+++||
T Consensus 270 t~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~g 334 (688)
T TIGR02100 270 TAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMH 334 (688)
T ss_pred ccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHHcC
Confidence 21 1111100 01232 256777888888888888876
No 130
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=41.68 E-value=62 Score=31.82 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=48.1
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCC-CCCCChhHHHHHHHHHHHHHHCCCEEEEEc
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~-~g~~n~~~l~~y~~~id~l~~~gI~p~vtL 165 (405)
-++|++...+.|++.+-+.++=|...-.. -+.=-++.++.+.++++.++++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 48999999999999999888666554332 144456789999999999999999999888
No 131
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=41.51 E-value=1.1e+02 Score=33.03 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=66.2
Q ss_pred hHHHHHHHHhCCCCEEEecc--cccccccC-CCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCC
Q 015517 107 YKEDVDIMANLNFDAYRFSI--SWSRIFPY-GTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLS 183 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi--~Wsri~P~-~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~ 183 (405)
-++.+++|+++|++.+-+++ --.+++-. ++| .+ .+-..+.++.+++.|+++.+.|- +++|.
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRg-ht---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg----------- 268 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQTIYNDILERTKRG-HT---VRDVVEATRLLRDAGLKVVYHIM-PGLPG----------- 268 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECccCCHHHHHHhCCC-CC---HHHHHHHHHHHHHcCCeEEEEee-cCCCC-----------
Confidence 36889999999999777776 22222211 112 12 34456788899999998777774 56662
Q ss_pred hHHHHHHHHHHHHHHH--HcC-CCcceEEeccccchhhcccCCCCCCCC
Q 015517 184 KRVVKDFADYADFCFK--TFG-DRVKNWMTFNEPRVVAALGYDNGFFAP 229 (405)
Q Consensus 184 ~~~~~~F~~ya~~~~~--~fg-d~V~~w~t~NEp~~~~~~gy~~g~~~P 229 (405)
++.+.+.+=++.+++ .++ |.|+.+-+.=+|......-|..|.+.|
T Consensus 269 -qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p 316 (522)
T TIGR01211 269 -SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKP 316 (522)
T ss_pred -CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCC
Confidence 224455555666665 355 567777766666655544466666655
No 132
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=41.15 E-value=99 Score=29.33 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHcC
Q 015517 143 GVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFG 202 (405)
Q Consensus 143 ~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~fg 202 (405)
.++...+.|..|+++|+++++++--+.....+ ....+++..+.|++-+..++++||
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 34667899999999999999999654433111 012455556777776666677776
No 133
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=41.14 E-value=1.7e+02 Score=29.05 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=43.4
Q ss_pred HHHHHHHHHHCCCEEEEEcCCC---CCcHHHHHh---c--------------------CCCCChHHHHHHHHHHHHHHHH
Q 015517 147 YNQLINYLLKRGITPYANLYHY---DLPEALEKK---Y--------------------NGLLSKRVVKDFADYADFCFKT 200 (405)
Q Consensus 147 y~~~id~l~~~gI~p~vtL~H~---d~P~~l~~~---y--------------------ggw~~~~~~~~F~~ya~~~~~~ 200 (405)
-+++|++|+++|+++++.++-+ +.+.+-+-+ | -.|.||+..+.|.+..+..+..
T Consensus 68 p~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~ 147 (319)
T cd06591 68 PKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYD 147 (319)
T ss_pred HHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhc
Confidence 4789999999999988876422 122211100 0 1256888877776655544444
Q ss_pred cCCCcc-eEEeccccchh
Q 015517 201 FGDRVK-NWMTFNEPRVV 217 (405)
Q Consensus 201 fgd~V~-~w~t~NEp~~~ 217 (405)
.| |+ .|+=+|||...
T Consensus 148 ~G--vdg~w~D~~Ep~~~ 163 (319)
T cd06591 148 KG--VDAWWLDAAEPEYS 163 (319)
T ss_pred CC--CcEEEecCCCCCcc
Confidence 44 44 68999999865
No 134
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=39.95 E-value=64 Score=35.23 Aligned_cols=93 Identities=16% Similarity=0.225 Sum_probs=56.3
Q ss_pred HHHHHHhCCCCEEEecccc--cccc--------cCCCCCC-----------Ch----hHHHHHHHHHHHHHHCCCEEEEE
Q 015517 110 DVDIMANLNFDAYRFSISW--SRIF--------PYGTGKV-----------NW----KGVAYYNQLINYLLKRGITPYAN 164 (405)
Q Consensus 110 Di~l~~~lG~~~~Rfsi~W--sri~--------P~~~g~~-----------n~----~~l~~y~~~id~l~~~gI~p~vt 164 (405)
-++-+++||++++=+.=-- .-+. ..|.... |+ ..++=+++||++|.++||++|++
T Consensus 169 ~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilD 248 (605)
T TIGR02104 169 GLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMD 248 (605)
T ss_pred HHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEE
Confidence 3899999999999865321 1110 0010000 11 11456899999999999999997
Q ss_pred c--CCCC----------CcHHHHH--h------cCCC------CChHHHHHHHHHHHHHHHHcC
Q 015517 165 L--YHYD----------LPEALEK--K------YNGL------LSKRVVKDFADYADFCFKTFG 202 (405)
Q Consensus 165 L--~H~d----------~P~~l~~--~------yggw------~~~~~~~~F~~ya~~~~~~fg 202 (405)
. .|.. .|.|... . +.|| .++.+.+.+.+-++..+++||
T Consensus 249 vV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~ 312 (605)
T TIGR02104 249 VVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYN 312 (605)
T ss_pred EEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 4 4542 1222210 0 1122 256777888888888888887
No 135
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=39.92 E-value=1.4e+02 Score=30.34 Aligned_cols=95 Identities=16% Similarity=0.264 Sum_probs=55.3
Q ss_pred hHHHHHHHHhCCCCEEEecc-cc-cccccCCCCCCChhHHHHHHHHHHHHHHCCCEEE-EEcCCCCCcHHHHHhcCCCCC
Q 015517 107 YKEDVDIMANLNFDAYRFSI-SW-SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLLS 183 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi-~W-sri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~-vtL~H~d~P~~l~~~yggw~~ 183 (405)
-+|.+++|+++|++.+-+++ += +++...-....+ .+-..+.|+.+++.|+..+ +++ =+++|. ++
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~---~~~~~~~i~~l~~~g~~~v~~dl-i~GlPg---------qt 165 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHN---EEDVYEAIANAKKAGFDNISIDL-IYALPG---------QT 165 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEee-ecCCCC---------CC
Confidence 47889999999999777766 22 233322112223 3557889999999999743 444 256662 23
Q ss_pred hHHHHHHHHHHHHHHHHcC-CCcceEEeccccchhh
Q 015517 184 KRVVKDFADYADFCFKTFG-DRVKNWMTFNEPRVVA 218 (405)
Q Consensus 184 ~~~~~~F~~ya~~~~~~fg-d~V~~w~t~NEp~~~~ 218 (405)
.+.+.+=.+.+.+ ++ +.|..+...-||....
T Consensus 166 ---~~~~~~~l~~~~~-l~~~~i~~y~l~~~pgT~~ 197 (377)
T PRK08599 166 ---IEDFKESLAKALA-LDIPHYSAYSLILEPKTVF 197 (377)
T ss_pred ---HHHHHHHHHHHHc-cCCCEEeeeceeecCCChh
Confidence 3445554554433 33 3454454445665443
No 136
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=39.65 E-value=1.2e+02 Score=34.28 Aligned_cols=105 Identities=17% Similarity=0.213 Sum_probs=64.7
Q ss_pred HHHHHHHhCCCC--EEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcC---CCCCc------------
Q 015517 109 EDVDIMANLNFD--AYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY---HYDLP------------ 171 (405)
Q Consensus 109 eDi~l~~~lG~~--~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~---H~d~P------------ 171 (405)
+-++.+.++|+. ..=..|.|-.=.- +=.+|....-....+++.|.++|++.++.+. +-+..
T Consensus 315 dvv~~~~~agiPld~~~~DiDyMd~yk--DFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v 392 (805)
T KOG1065|consen 315 DVVENYRAAGIPLDVIVIDIDYMDGYK--DFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDV 392 (805)
T ss_pred HHHHHHHHcCCCcceeeeehhhhhccc--ceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhce
Confidence 335666677765 5545555543221 2345665556689999999999999999986 32322
Q ss_pred ---------HHHHHhcCC------CCChHHHHHHHHHHHHHHHHcCCCcc---eEEeccccchhhc
Q 015517 172 ---------EALEKKYNG------LLSKRVVKDFADYADFCFKTFGDRVK---NWMTFNEPRVVAA 219 (405)
Q Consensus 172 ---------~~l~~~ygg------w~~~~~~~~F~~ya~~~~~~fgd~V~---~w~t~NEp~~~~~ 219 (405)
.-+.+-..| ++|++++ .++...+++|.+.|. +|+-+|||.-+..
T Consensus 393 ~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~----~Ww~~~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 393 LIKNREGSPKMLGEVWPGSTAFPDFTNPAVV----EWWLDELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred eeecccCchhhhcccCCCcccccccCCchHH----HHHHHHHHhhcccCCccceEEECCCcccCCC
Confidence 101111122 5566544 445556778888876 5999999976543
No 137
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=39.41 E-value=1e+02 Score=30.48 Aligned_cols=64 Identities=22% Similarity=0.526 Sum_probs=46.0
Q ss_pred chHHHHHHHHhCCCCEEEeccc----ccc---cccCC------------CCCCChhHHHHHHHHHHHHHHCCCEEEEEcC
Q 015517 106 RYKEDVDIMANLNFDAYRFSIS----WSR---IFPYG------------TGKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~----Wsr---i~P~~------------~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~ 166 (405)
..++-|+.|+..++|.+.+-++ |+- ..|.- .|.+-++- ++++++.++++||++|.-+
T Consensus 17 ~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~d---i~elv~yA~~rgI~viPEi- 92 (303)
T cd02742 17 SIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQ---LKDIIEYAAARGIEVIPEI- 92 (303)
T ss_pred HHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHH---HHHHHHHHHHcCCEEEEec-
Confidence 3678899999999999887776 521 12221 13455544 6999999999999999877
Q ss_pred CCCCcHHHH
Q 015517 167 HYDLPEALE 175 (405)
Q Consensus 167 H~d~P~~l~ 175 (405)
|+|....
T Consensus 93 --D~PGH~~ 99 (303)
T cd02742 93 --DMPGHST 99 (303)
T ss_pred --cchHHHH
Confidence 7776543
No 138
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=38.96 E-value=1.4e+02 Score=30.79 Aligned_cols=104 Identities=13% Similarity=0.182 Sum_probs=61.5
Q ss_pred hHHHHHHHHhCCCCEEEecc-ccc-ccccCCCCC-CChhHHHHHHHHHHHHHHCCCE-EEEEcCCCCCcHHHHHhcCCCC
Q 015517 107 YKEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGK-VNWKGVAYYNQLINYLLKRGIT-PYANLYHYDLPEALEKKYNGLL 182 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~-~n~~~l~~y~~~id~l~~~gI~-p~vtL~H~d~P~~l~~~yggw~ 182 (405)
-++.++.|+++|+|.+-+++ +-+ ++...- |. .+. +-..+.++.+++.|++ +-++|. +++|.
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~l-~R~~~~---~~~~~ai~~l~~~G~~~v~~dlI-~GlPg---------- 178 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLALC-GRSHRV---KDIFAAVDLIHQAGIENFSLDLI-SGLPH---------- 178 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHHh-CCCCCH---HHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 47889999999999666655 221 121111 22 222 3457789999999998 567775 56662
Q ss_pred ChHHHHHHHHHHHHHHHHcCCCcceEEeccccchhhcccCCCCCC
Q 015517 183 SKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFF 227 (405)
Q Consensus 183 ~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEp~~~~~~gy~~g~~ 227 (405)
++.+.+.+=++.+.+-=-+.|..+...-||......-+..|.+
T Consensus 179 --qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 179 --QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred --CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 2234444444444433235677777777887654444444443
No 139
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=38.59 E-value=95 Score=32.10 Aligned_cols=107 Identities=18% Similarity=0.248 Sum_probs=63.7
Q ss_pred hHHHHHHHHhCCCC--EEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCC---CCc---HHHHHh-
Q 015517 107 YKEDVDIMANLNFD--AYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY---DLP---EALEKK- 177 (405)
Q Consensus 107 y~eDi~l~~~lG~~--~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~---d~P---~~l~~~- 177 (405)
..+-++.+++.|+- ++=+...|..-.. +-.+|.+-..-.+++++.|+++|++.++.++-+ +-+ ..-+.+
T Consensus 45 v~~~i~~~~~~~iP~d~~~iD~~~~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~ 122 (441)
T PF01055_consen 45 VREVIDRYRSNGIPLDVIWIDDDYQDGYG--DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKE 122 (441)
T ss_dssp HHHHHHHHHHTT--EEEEEE-GGGSBTTB--TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCccceecccccccccc--ccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhh
Confidence 45666777766654 4555555655322 134455444446899999999999988766522 222 111111
Q ss_pred --c-----CC----------------CCChHHHHHHHHHHHHHHHHcCCCcc-eEEeccccchh
Q 015517 178 --Y-----NG----------------LLSKRVVKDFADYADFCFKTFGDRVK-NWMTFNEPRVV 217 (405)
Q Consensus 178 --y-----gg----------------w~~~~~~~~F~~ya~~~~~~fgd~V~-~w~t~NEp~~~ 217 (405)
+ .| |.+++..+.|.+..+.+++.+| |+ +|+=+|||..+
T Consensus 123 ~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G--vdg~w~D~~E~~~~ 184 (441)
T PF01055_consen 123 KGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG--VDGWWLDFGEPSSF 184 (441)
T ss_dssp TT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST---SEEEEESTTTBSS
T ss_pred cCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC--CceEEeecCCcccc
Confidence 1 12 6788889999888888777765 44 68999999865
No 140
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=36.38 E-value=85 Score=29.41 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=54.3
Q ss_pred HHHHHH----HHhCCCCEEEecccccccccCC-CCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCC
Q 015517 108 KEDVDI----MANLNFDAYRFSISWSRIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLL 182 (405)
Q Consensus 108 ~eDi~l----~~~lG~~~~Rfsi~Wsri~P~~-~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~ 182 (405)
++|++. +++.|++.+|+.++=+...... .+.--++.++...++++.+++.|+++.+++-+..
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~------------- 132 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS------------- 132 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-------------
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc-------------
Confidence 455554 4569999999998666543332 1333456788899999999999999988885431
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 015517 183 SKRVVKDFADYADFCFKT 200 (405)
Q Consensus 183 ~~~~~~~F~~ya~~~~~~ 200 (405)
+...+.+.++++.+.+.
T Consensus 133 -~~~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 133 -RTDPEELLELAEALAEA 149 (237)
T ss_dssp -GSSHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHc
Confidence 12245777777776555
No 141
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=36.25 E-value=86 Score=31.03 Aligned_cols=73 Identities=19% Similarity=0.160 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHcCCCcceEEeccccchhhcccCC
Q 015517 144 VAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYD 223 (405)
Q Consensus 144 l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEp~~~~~~gy~ 223 (405)
.+-+.+.++.++++||++.+++. +++|. ++.+.+.+=++.+.+-=-+.|+.....-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 34578899999999999887764 45551 234667776666655434668888888888766555555
Q ss_pred CCCCCC
Q 015517 224 NGFFAP 229 (405)
Q Consensus 224 ~g~~~P 229 (405)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 565543
No 142
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=36.15 E-value=1.2e+02 Score=31.66 Aligned_cols=61 Identities=15% Similarity=0.257 Sum_probs=39.9
Q ss_pred hHHHHHHHHhCCCCEEEecc-cc-cccccCCCCCCChhHHHHHHHHHHHHHHCCCEEE-EEcCCCCCc
Q 015517 107 YKEDVDIMANLNFDAYRFSI-SW-SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLP 171 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi-~W-sri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~-vtL~H~d~P 171 (405)
-+|.+++|+++|++.+-+++ += .++...- |.-. ..+-..+.|+.|++.|+..+ ++|. +++|
T Consensus 140 t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l-~R~~--~~~~~~~ai~~l~~~g~~~i~~dlI-~GlP 203 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIGVQSFHDSELHAL-HRPQ--KRADVHQALEWIRAAGFPILNIDLI-YGIP 203 (430)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHh-CCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCC
Confidence 47889999999999666666 33 1222221 2211 23457889999999999864 5653 5566
No 143
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=35.52 E-value=1.7e+02 Score=29.68 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=56.2
Q ss_pred hHHHHHHHHhCCCCEEEecc-ccc-ccccCCCCCCChhHHHHHHHHHHHHHHCCCE-EEEEcCCCCCcHHHHHhcCCCCC
Q 015517 107 YKEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGIT-PYANLYHYDLPEALEKKYNGLLS 183 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~~l~~y~~~id~l~~~gI~-p~vtL~H~d~P~~l~~~yggw~~ 183 (405)
-+|.+++|+++|++.+-+++ +-+ ++.-.- +... ..+-..+.++.+++.|+. +.++|- +++|.
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l-~R~~--s~~~~~~a~~~l~~~g~~~v~~dli-~GlPg----------- 171 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQSAAPHVLAVL-DRTH--TPGRAVAAAREARAAGFEHVNLDLI-YGTPG----------- 171 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCC--CHHHHHHHHHHHHHcCCCcEEEEEe-ccCCC-----------
Confidence 47889999999999666665 222 221111 2211 234567889999999998 666664 45552
Q ss_pred hHHHHHHHHHHHHHHHHcC-CCcceEEeccccchhhc
Q 015517 184 KRVVKDFADYADFCFKTFG-DRVKNWMTFNEPRVVAA 219 (405)
Q Consensus 184 ~~~~~~F~~ya~~~~~~fg-d~V~~w~t~NEp~~~~~ 219 (405)
++.+.|.+=.+.+.+ ++ +.+..+...-||+....
T Consensus 172 -qt~~~~~~tl~~~~~-l~~~~i~~y~l~~~~gT~l~ 206 (375)
T PRK05628 172 -ESDDDWRASLDAALE-AGVDHVSAYALIVEDGTALA 206 (375)
T ss_pred -CCHHHHHHHHHHHHh-cCCCEEEeeeeecCCCChHH
Confidence 234455555554443 44 45655555556665433
No 144
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=35.41 E-value=56 Score=34.22 Aligned_cols=77 Identities=18% Similarity=0.276 Sum_probs=46.0
Q ss_pred hHHHHHHHHhCCCCEEEecc-ccc-ccccCCCCCCChhHHHHHHHHHHHHHHCCCE-EEEEcCCCCCcHHHHHhcCCCCC
Q 015517 107 YKEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGIT-PYANLYHYDLPEALEKKYNGLLS 183 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~~l~~y~~~id~l~~~gI~-p~vtL~H~d~P~~l~~~yggw~~ 183 (405)
-++.+++|+++|++.+-+++ +=+ ++.-.-....+ .+.+.+.++.|++.|++ +-++|. +++|.
T Consensus 150 ~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlPg----------- 214 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQP---EEMIFELMNHAREAGFTSINIDLI-YGLPK----------- 214 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-eeCCC-----------
Confidence 47889999999999666655 222 12211111223 35578899999999997 445553 45552
Q ss_pred hHHHHHHHHHHHHHHH
Q 015517 184 KRVVKDFADYADFCFK 199 (405)
Q Consensus 184 ~~~~~~F~~ya~~~~~ 199 (405)
++.+.|.+-.+.+.+
T Consensus 215 -qt~e~~~~tl~~~~~ 229 (455)
T TIGR00538 215 -QTKESFAKTLEKVAE 229 (455)
T ss_pred -CCHHHHHHHHHHHHh
Confidence 234555555555444
No 145
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=34.96 E-value=1.2e+02 Score=28.86 Aligned_cols=54 Identities=15% Similarity=0.071 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHcC
Q 015517 145 AYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFG 202 (405)
Q Consensus 145 ~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~fg 202 (405)
...+.+++.++++|+++++.+..+....... -..++...+.|++=+-..+++||
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 3467889999999999999997654432111 12356667777766666666665
No 146
>PLN02389 biotin synthase
Probab=34.71 E-value=1.2e+02 Score=31.21 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=42.5
Q ss_pred chHHHHHHHHhCCCCEEEecccccc-cccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcC
Q 015517 106 RYKEDVDIMANLNFDAYRFSISWSR-IFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsr-i~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~ 166 (405)
.-+|.++.||++|++.|-.+++=++ ++|+-...- ..+..-+.++.+++.||++..++.
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~---s~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTR---SYDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCC---CHHHHHHHHHHHHHcCCeEeEEEE
Confidence 5689999999999999999885222 444421112 345678999999999999877653
No 147
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=34.69 E-value=1.5e+02 Score=25.74 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHcCCC
Q 015517 145 AYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDR 204 (405)
Q Consensus 145 ~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~fgd~ 204 (405)
+=+.-+++.|++.|++|++.+.= -.+.|.. |-|. +++..+.|.+=.+..++++|=.
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wyd--ytG~-~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYD--YTGL-SKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHH--HhCC-CHHHHHHHHHHHHHHHHHCCCE
Confidence 33688999999999999999831 0123332 4564 5677888888888888988853
No 148
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=34.55 E-value=1.5e+02 Score=31.06 Aligned_cols=89 Identities=16% Similarity=0.231 Sum_probs=56.1
Q ss_pred hHHHHHHHHhCCCCEEEecc--cccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEE-EEcCCCCCcHH--HHHhcCCC
Q 015517 107 YKEDVDIMANLNFDAYRFSI--SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEA--LEKKYNGL 181 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi--~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~-vtL~H~d~P~~--l~~~yggw 181 (405)
-.+|++.++++.--.-|+++ .|.. +|.+.|+ +.++++||+.- ++..-|-.|+. -.-++|..
T Consensus 72 ~i~D~~~v~~Lt~~~~~v~LH~~wd~--------vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSL 137 (412)
T TIGR02629 72 KLEDCAVIQQLTRATPNVSLHIPWDK--------ADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSL 137 (412)
T ss_pred HHHHHHHHHhhcCCCCCccccCCCCc--------CCHHHHH------HHHHHcCCccceeccccccCccccccccccccc
Confidence 36778888777766666655 7722 4655554 89999999988 76665666632 11234667
Q ss_pred CChH--HHHHHHHHHHHH---HHHcCCC-cceEE
Q 015517 182 LSKR--VVKDFADYADFC---FKTFGDR-VKNWM 209 (405)
Q Consensus 182 ~~~~--~~~~F~~ya~~~---~~~fgd~-V~~w~ 209 (405)
.|++ +.+...+-...| .++.|.+ |..|+
T Consensus 138 tnPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 138 SHTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 7654 666677766665 5566654 44443
No 149
>PLN02229 alpha-galactosidase
Probab=34.18 E-value=1e+02 Score=32.36 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=35.4
Q ss_pred hHHHHHH-----HHhCCCCEEEecccccccccCCCCC--CChhHHHH-HHHHHHHHHHCCCEEEE
Q 015517 107 YKEDVDI-----MANLNFDAYRFSISWSRIFPYGTGK--VNWKGVAY-YNQLINYLLKRGITPYA 163 (405)
Q Consensus 107 y~eDi~l-----~~~lG~~~~Rfsi~Wsri~P~~~g~--~n~~~l~~-y~~~id~l~~~gI~p~v 163 (405)
.++-.+. ++++|.+.+=+.--|..-.-+..|. +|++-.-. .+.+.|.+.++|++-=+
T Consensus 82 i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~k~ladyiH~~GlKfGI 146 (427)
T PLN02229 82 IKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGIKLLADYVHSKGLKLGI 146 (427)
T ss_pred HHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCCcHHHHHHHHHHCCCceEE
Confidence 4555565 4899999999999996321111132 23321100 58899999999998543
No 150
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=33.95 E-value=1.6e+02 Score=32.34 Aligned_cols=93 Identities=12% Similarity=0.044 Sum_probs=56.3
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcH----HHHHh-----
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPE----ALEKK----- 177 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~----~l~~~----- 177 (405)
.++|++..++.|++.+|+..+-+.+ +-....|+..+++|....+++..-+.|. .+.+.
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV-------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELE 164 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 4667889999999999998765554 2246667777888887776664323341 11110
Q ss_pred -----------cCCCCChHHHHHHHHHHHHHHHHcCCCcceEEeccccch
Q 015517 178 -----------YNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (405)
Q Consensus 178 -----------yggw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEp~~ 216 (405)
-.|-..|. ...+.++.+-++++ ..-...+-|-..+
T Consensus 165 ~~Gad~I~i~Dt~G~~~P~---~~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 210 (592)
T PRK09282 165 EMGCDSICIKDMAGLLTPY---AAYELVKALKEEVD-LPVQLHSHCTSGL 210 (592)
T ss_pred HcCCCEEEECCcCCCcCHH---HHHHHHHHHHHhCC-CeEEEEEcCCCCc
Confidence 03444444 45666666667775 2224556666554
No 151
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=33.89 E-value=2.2e+02 Score=24.96 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=39.1
Q ss_pred cchHHHHHHHHhCCCCEEEeccc-ccc-cccCCCCCCChhHHHHHHHHHHHHHHCC-CEEEEEc
Q 015517 105 HRYKEDVDIMANLNFDAYRFSIS-WSR-IFPYGTGKVNWKGVAYYNQLINYLLKRG-ITPYANL 165 (405)
Q Consensus 105 ~~y~eDi~l~~~lG~~~~Rfsi~-Wsr-i~P~~~g~~n~~~l~~y~~~id~l~~~g-I~p~vtL 165 (405)
..-++.++.|++.|++.+.+|+. ++. +...-..... .+.+.+.|+.+++.| +.+.+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 33478899999999999999985 543 2111111122 377899999999999 6555444
No 152
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=33.53 E-value=5.3e+02 Score=26.24 Aligned_cols=130 Identities=19% Similarity=0.144 Sum_probs=76.3
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCC----------c---HHHHHhc--CCC------C---ChHHHHHHHH
Q 015517 137 GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL----------P---EALEKKY--NGL------L---SKRVVKDFAD 192 (405)
Q Consensus 137 g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~----------P---~~l~~~y--ggw------~---~~~~~~~F~~ 192 (405)
+-++++-+.-++++.+.++++|-+.++=|+|-.- | ..+.... ... + =.++++.|++
T Consensus 75 ~l~~d~~i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~ 154 (370)
T cd02929 75 RLWDDGDIRNLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVD 154 (370)
T ss_pred CcCCHHHHHHHHHHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999532 0 0000000 000 0 1237888888
Q ss_pred HHHHHHHHcC-CCcceEEeccccchhhcccCCCCCC-CCC--CCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 015517 193 YADFCFKTFG-DRVKNWMTFNEPRVVAALGYDNGFF-APG--RCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQ 268 (405)
Q Consensus 193 ya~~~~~~fg-d~V~~w~t~NEp~~~~~~gy~~g~~-~Pg--~~~~~~~~~~~~~~~~~~~~~~hn~llAHA~Av~~~r~ 268 (405)
=|+.+.+. | |-|. +.+-.||+...| .|. ++. +.- |.| +-|-+.--.++++.+|+
T Consensus 155 AA~ra~~a-GfDgVE---------ih~ahGyLl~QFlSp~~N~Rt----D~y-GGs-------lenR~Rf~~eii~aIr~ 212 (370)
T cd02929 155 AALRARDA-GFDIVY---------VYAAHGYLPLQFLLPRYNKRT----DEY-GGS-------LENRARFWRETLEDTKD 212 (370)
T ss_pred HHHHHHHc-CCCEEE---------EcccccchHHHhhCccccCCc----ccc-CCC-------hHhhhHHHHHHHHHHHH
Confidence 77665543 3 3332 345567776543 232 111 111 112 23444444567777777
Q ss_pred HhcccCCceEEEEecCceeecC
Q 015517 269 KYEQKQKGRIGILLDFVWYEPL 290 (405)
Q Consensus 269 ~~~~~~~~kIGi~~~~~~~~P~ 290 (405)
... ++..||+-++.....|.
T Consensus 213 ~vg--~~~~v~vRls~~~~~~~ 232 (370)
T cd02929 213 AVG--DDCAVATRFSVDELIGP 232 (370)
T ss_pred HcC--CCceEEEEecHHHhcCC
Confidence 643 25679998887665553
No 153
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=33.24 E-value=2.2e+02 Score=28.94 Aligned_cols=94 Identities=11% Similarity=0.100 Sum_probs=59.4
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCC---CCCCChhHHHHHHHHHHHHHHCCCE-EEEEcCCCCCcHHHHHhcCCCC
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYG---TGKVNWKGVAYYNQLINYLLKRGIT-PYANLYHYDLPEALEKKYNGLL 182 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~---~g~~n~~~l~~y~~~id~l~~~gI~-p~vtL~H~d~P~~l~~~yggw~ 182 (405)
-++.++.|+++|+|.+-+++ .-+-++- -|... ..+-..+.|+.+++.|+. +-++|- +++|.
T Consensus 102 ~~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg---------- 166 (370)
T PRK06294 102 SESYIRALALTGINRISIGV--QTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT---------- 166 (370)
T ss_pred CHHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 37889999999999555554 2232221 02211 123456788999999997 556664 56662
Q ss_pred ChHHHHHHHHHHHHHHHHcCCCcceEEeccccchh
Q 015517 183 SKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVV 217 (405)
Q Consensus 183 ~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEp~~~ 217 (405)
++.+.|.+=.+.+.+-=-+.|..+...=||...
T Consensus 167 --qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 --QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred --CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 245667776666655333678888888888754
No 154
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=33.13 E-value=1.8e+02 Score=29.24 Aligned_cols=91 Identities=18% Similarity=0.233 Sum_probs=54.7
Q ss_pred HHHHHHHHhCCCCEEEecc-ccc-ccccCCCCCCChhHHHHHHHHHHHHHHCCCEEE-EEcCCCCCcHHHHHhcCCCCCh
Q 015517 108 KEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLLSK 184 (405)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~-vtL~H~d~P~~l~~~yggw~~~ 184 (405)
++.++.|+++|+|-+-++| +-+ ++...- |... ..+-..+.|+.+++.|++.+ ++|- +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l-gR~~--~~~~~~~ai~~lr~~g~~~v~iDli-~GlPg------------ 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFL-GRIH--SQKQIIKAIENAKKAGFENISIDLI-YDTPL------------ 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCC--CHHHHHHHHHHHHHcCCCEEEEEee-cCCCC------------
Confidence 7899999999999666666 443 222221 3221 13457889999999999855 6664 56662
Q ss_pred HHHHHHHHHHHHHHHHcC-CCcceEEeccccc
Q 015517 185 RVVKDFADYADFCFKTFG-DRVKNWMTFNEPR 215 (405)
Q Consensus 185 ~~~~~F~~ya~~~~~~fg-d~V~~w~t~NEp~ 215 (405)
++.+.|.+-.+.+.+ .+ +.|..+...=||.
T Consensus 162 qt~~~~~~~l~~~~~-l~~~~is~y~L~~~~g 192 (350)
T PRK08446 162 DNKKLLKEELKLAKE-LPINHLSAYSLTIEEN 192 (350)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEeccceecCC
Confidence 234455555555443 33 3455444444554
No 155
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=33.09 E-value=31 Score=26.21 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=31.7
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCC
Q 015517 129 SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY 168 (405)
Q Consensus 129 sri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~ 168 (405)
+++.|+. +.=-.++++..-+++..|.++|| +++.|++-
T Consensus 19 s~l~p~~-~~d~~kaldiCaeIL~cLE~R~i-sWl~LFql 56 (64)
T PF03511_consen 19 SYLAPKE-GADSLKALDICAEILGCLEKRKI-SWLVLFQL 56 (64)
T ss_pred HhcCccc-ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhc
Confidence 5678886 55567899999999999999999 88888754
No 156
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=32.60 E-value=1e+02 Score=31.17 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCC
Q 015517 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYH 167 (405)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H 167 (405)
.+|++...+.|++.+|+...+++. +--.+.|+.+++.|+++.+++..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~-------------~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA-------------DVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH-------------HHHHHHHHHHHHCCCeEEEEEEe
Confidence 589999999999999998755553 12588999999999999998853
No 157
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=32.34 E-value=1e+02 Score=31.88 Aligned_cols=59 Identities=27% Similarity=0.351 Sum_probs=39.9
Q ss_pred HHHHHHHhCCCCEEEecccccccccC-CC-----CCC--ChhHHHHHHHHHHHHHHCCCEEEEEc--CC
Q 015517 109 EDVDIMANLNFDAYRFSISWSRIFPY-GT-----GKV--NWKGVAYYNQLINYLLKRGITPYANL--YH 167 (405)
Q Consensus 109 eDi~l~~~lG~~~~Rfsi~Wsri~P~-~~-----g~~--n~~~l~~y~~~id~l~~~gI~p~vtL--~H 167 (405)
+-++.+++||++++=++=--.-+... |. -.+ ....++-.+++|+++.++||++++++ .|
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH 101 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNH 101 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 66799999999998654211111111 10 122 23456779999999999999999987 55
No 158
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.32 E-value=2.3e+02 Score=28.16 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=24.1
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCCcceEEeccccch
Q 015517 181 LLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (405)
Q Consensus 181 w~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEp~~ 216 (405)
+.|++..+.|.+..+..+...| -.-.|+=+|||.+
T Consensus 137 ftnp~a~~ww~~~~~~~~~~~G-vdg~w~D~~E~~~ 171 (317)
T cd06599 137 FTNPEGREWWKEGVKEALLDLG-IDSTWNDNNEYEI 171 (317)
T ss_pred CCChHHHHHHHHHHHHHHhcCC-CcEEEecCCCCcc
Confidence 4688888888777755555554 1236888999964
No 159
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=32.20 E-value=1.9e+02 Score=28.53 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=44.9
Q ss_pred hHHHHHHHHhCCCCEEEecc----cccccccCC---CCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHH
Q 015517 107 YKEDVDIMANLNFDAYRFSI----SWSRIFPYG---TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALE 175 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi----~Wsri~P~~---~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~ 175 (405)
.++=|++|+.+|+|.+-+=+ .++. .|.- .|.+..+- ++++++.++++||++|.-+ |+|..+.
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~e---i~ei~~yA~~~gI~vIPei---d~pGH~~ 87 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEE---IREIDDYAAELGIEVIPLI---QTLGHLE 87 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHH---HHHHHHHHHHcCCEEEecC---CCHHHHH
Confidence 78889999999999887744 2221 1221 25666644 6999999999999999876 5665543
No 160
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=31.95 E-value=1.6e+02 Score=28.43 Aligned_cols=52 Identities=17% Similarity=0.253 Sum_probs=34.5
Q ss_pred HHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHcCCCcc-eEEeccccchh
Q 015517 147 YNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVK-NWMTFNEPRVV 217 (405)
Q Consensus 147 y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~fgd~V~-~w~t~NEp~~~ 217 (405)
-+++|+.|+++|++.++.++ |. +.+.|.+..+.+.... -|+ .|+=+|||...
T Consensus 68 p~~~i~~l~~~g~~~~~~~~----P~-------------v~~w~~~~~~~~~~~~--Gvdg~w~D~~E~~~~ 120 (265)
T cd06589 68 PKSMIDELHDNGVKLVLWID----PY-------------IREWWAEVVKKLLVSL--GVDGFWTDMGEPSPG 120 (265)
T ss_pred HHHHHHHHHHCCCEEEEEeC----hh-------------HHHHHHHHHHHhhccC--CCCEEeccCCCCCcC
Confidence 47899999999999998774 31 1444544444332222 354 58899999754
No 161
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=31.79 E-value=79 Score=33.13 Aligned_cols=60 Identities=20% Similarity=0.326 Sum_probs=38.4
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCC---CCCCChhHHHHHHHHHHHHHHCCCE-EEEEcCCCCCc
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYG---TGKVNWKGVAYYNQLINYLLKRGIT-PYANLYHYDLP 171 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~---~g~~n~~~l~~y~~~id~l~~~gI~-p~vtL~H~d~P 171 (405)
-+|.+++|+++|++.+-+++ .-.-|+- -+.. ...+-..+.|+.+++.|++ +-++|. +++|
T Consensus 151 t~e~l~~L~~~G~~rvsiGv--QS~~~~vl~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dli-~GlP 214 (453)
T PRK13347 151 TAEMLQALAALGFNRASFGV--QDFDPQVQKAINRI--QPEEMVARAVELLRAAGFESINFDLI-YGLP 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECC--CCCCHHHHHHhCCC--CCHHHHHHHHHHHHhcCCCcEEEeEE-EeCC
Confidence 47899999999999555555 3332221 0211 1234568899999999997 445653 4555
No 162
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=31.74 E-value=1.8e+02 Score=27.90 Aligned_cols=52 Identities=10% Similarity=0.379 Sum_probs=39.7
Q ss_pred ccchHHHHHHHHhCCCCEEEe----------------------cccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEE
Q 015517 104 YHRYKEDVDIMANLNFDAYRF----------------------SISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITP 161 (405)
Q Consensus 104 y~~y~eDi~l~~~lG~~~~Rf----------------------si~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p 161 (405)
--.-+.-|+++++||.+++.| ++ | +||.| .+| ++-+..++..+++.|++-
T Consensus 134 iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG--GId---l~Nf~~I~~i~ldaGv~k 205 (236)
T TIGR03581 134 IVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG--GID---LDNFEEIVQIALDAGVEK 205 (236)
T ss_pred eeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC--Ccc---HHhHHHHHHHHHHcCCCe
Confidence 345577899999999999885 23 3 57774 466 467899999999999986
Q ss_pred EE
Q 015517 162 YA 163 (405)
Q Consensus 162 ~v 163 (405)
++
T Consensus 206 vi 207 (236)
T TIGR03581 206 VI 207 (236)
T ss_pred ec
Confidence 63
No 163
>PRK07094 biotin synthase; Provisional
Probab=31.21 E-value=90 Score=30.82 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=40.3
Q ss_pred chHHHHHHHHhCCCCEEEeccc-c-cccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEc
Q 015517 106 RYKEDVDIMANLNFDAYRFSIS-W-SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~-W-sri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL 165 (405)
.-+|+++.|+++|++.+-++++ - +++...-.... ..+-+.+.|+.+++.||.+..++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~---s~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGM---SFENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCC---CHHHHHHHHHHHHHcCCeecceE
Confidence 4589999999999999998883 3 24433321112 23567889999999999865554
No 164
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=31.15 E-value=72 Score=30.40 Aligned_cols=62 Identities=11% Similarity=0.044 Sum_probs=41.7
Q ss_pred cccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEc
Q 015517 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 103 ~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL 165 (405)
...++++-+++.+.+|.+.+++.-......+.. ...-+..++.++.+.+.+.++||+..+=-
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP-NVIWGRLAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 456677888999999999999864322111111 11113456778899999999999876543
No 165
>PRK12677 xylose isomerase; Provisional
Probab=30.90 E-value=3.6e+02 Score=27.75 Aligned_cols=90 Identities=16% Similarity=0.111 Sum_probs=53.0
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEE-EEcCCCCCcHHHHHhcCCCCChH
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLLSKR 185 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~-vtL~H~d~P~~l~~~yggw~~~~ 185 (405)
..|-++.++++|++.+=+.. ..+.|-. ....+--+..+++-+.+.++||++. ++...+..|.+ +.|++.+++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~--~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~d 105 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG--ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSND 105 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC--CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCCC
Confidence 58889999999999986632 3344442 1111111346788888999999976 55554544533 236787643
Q ss_pred --HHHHHHHHHHHH---HHHcCC
Q 015517 186 --VVKDFADYADFC---FKTFGD 203 (405)
Q Consensus 186 --~~~~F~~ya~~~---~~~fgd 203 (405)
..+.-.++.+.+ ++++|-
T Consensus 106 ~~~R~~Ai~~~~r~IdlA~eLGa 128 (384)
T PRK12677 106 RDVRRYALRKVLRNIDLAAELGA 128 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 223323344333 555664
No 166
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=30.80 E-value=1.5e+02 Score=30.32 Aligned_cols=86 Identities=15% Similarity=0.243 Sum_probs=57.4
Q ss_pred CCcccccchHHHHHHHHhCCCCEEEecccccccccCCCCCC------ChhH-HHHHHHHHHHHHHCCCEEEEEcCCCCCc
Q 015517 99 VSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKV------NWKG-VAYYNQLINYLLKRGITPYANLYHYDLP 171 (405)
Q Consensus 99 ~a~d~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~------n~~~-l~~y~~~id~l~~~gI~p~vtL~H~d~P 171 (405)
+|.=||+ |+-=++-++. ++.+|+. + |.+ .... -+..+.+++.++++|+-.=+..+|-.++
T Consensus 78 VADIHFd-~~lAl~a~~~--v~kiRIN---------P-GNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~ 144 (359)
T PF04551_consen 78 VADIHFD-YRLALEAIEA--VDKIRIN---------P-GNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLE 144 (359)
T ss_dssp EEEESTT-CHHHHHHHHC---SEEEE----------T-TTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-
T ss_pred eeecCCC-HHHHHHHHHH--hCeEEEC---------C-CcccccccccccchHHHHHHHHHHHHHCCCCEEEecccccCc
Confidence 4555655 5555555544 9999975 2 555 0011 2568999999999999999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHH
Q 015517 172 EALEKKYNGLLSKRVVKDFADYADFCF 198 (405)
Q Consensus 172 ~~l~~~yggw~~~~~~~~F~~ya~~~~ 198 (405)
..+.++| |-.....++.-.++++.|-
T Consensus 145 ~~~~~ky-~~t~~amvesA~~~~~~le 170 (359)
T PF04551_consen 145 KDILEKY-GPTPEAMVESALEHVRILE 170 (359)
T ss_dssp HHHHHHH-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhc-cchHHHHHHHHHHHHHHHH
Confidence 9999998 4344456677777777543
No 167
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=30.68 E-value=1.5e+02 Score=33.03 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=44.0
Q ss_pred HHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 015517 147 YNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKT 200 (405)
Q Consensus 147 y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~ 200 (405)
+..+|+.++++|+..=+..+|-.++.-+..+||. ...-.++--.+|++.|-+.
T Consensus 212 f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e~~ 264 (733)
T PLN02925 212 FTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKL 264 (733)
T ss_pred HHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHHHC
Confidence 3459999999999999999999999999999875 4455777778888877554
No 168
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=30.66 E-value=82 Score=31.03 Aligned_cols=68 Identities=13% Similarity=0.319 Sum_probs=48.6
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChH
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKR 185 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~ 185 (405)
.++-+++++++|+..+.+.. + +.=+++.+++|+++++.+.+++| +|.+|=-..|.-++..|.-..++|
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF-----~----~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTyPN~mT~E 175 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDF-----M----DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTYPNLMTRE 175 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-----------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCSTTEEEE-
T ss_pred HHHHHHHHHHcCCCEEeeCc-----C----CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccCccHHHHH
Confidence 46778999999999999874 2 22478999999999999999987 566765667877777665555555
No 169
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.26 E-value=2e+02 Score=28.15 Aligned_cols=71 Identities=14% Similarity=0.081 Sum_probs=50.3
Q ss_pred cccccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHH
Q 015517 101 VDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEAL 174 (405)
Q Consensus 101 ~d~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l 174 (405)
++......+=.+.+|++|++.+|-+..=+|--|.+.-.+-.++ ++.+-+.+++.||..+.+.++-.....+
T Consensus 37 ie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~g---l~~l~~~~~~~Gl~~~te~~d~~~~~~l 107 (266)
T PRK13398 37 VESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEG---LKILKEVGDKYNLPVVTEVMDTRDVEEV 107 (266)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHH---HHHHHHHHHHcCCCEEEeeCChhhHHHH
Confidence 4456667777889999999999999755777665421122444 5667777899999999999765444443
No 170
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=30.24 E-value=1.8e+02 Score=31.29 Aligned_cols=95 Identities=14% Similarity=0.110 Sum_probs=54.9
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEc----CCCCCcHHHHHh-----
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL----YHYDLPEALEKK----- 177 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL----~H~d~P~~l~~~----- 177 (405)
-+.|++..++.|++.+|+....+.+ +-.+..|+.+++.|.....++ .+-+.|..+.+.
T Consensus 99 v~~fv~~a~~~Gidi~RIfd~lndv-------------~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~ 165 (499)
T PRK12330 99 VDRFVEKSAENGMDVFRVFDALNDP-------------RNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLL 165 (499)
T ss_pred HHHHHHHHHHcCCCEEEEEecCChH-------------HHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999766555 223555666666666553332 222233222211
Q ss_pred -----------cCCCCChHHHHHHHHHHHHHHHHcCCCcc-eEEeccccchh
Q 015517 178 -----------YNGLLSKRVVKDFADYADFCFKTFGDRVK-NWMTFNEPRVV 217 (405)
Q Consensus 178 -----------yggw~~~~~~~~F~~ya~~~~~~fgd~V~-~w~t~NEp~~~ 217 (405)
--|-..|. ...+.++.+-+++++.++ ...+-|-..+-
T Consensus 166 ~~Gad~I~IkDtaGll~P~---~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA 214 (499)
T PRK12330 166 DMGADSICIKDMAALLKPQ---PAYDIVKGIKEACGEDTRINLHCHSTTGVT 214 (499)
T ss_pred HcCCCEEEeCCCccCCCHH---HHHHHHHHHHHhCCCCCeEEEEeCCCCCcH
Confidence 13455544 556666666777863333 46676666543
No 171
>PRK09936 hypothetical protein; Provisional
Probab=30.20 E-value=4.3e+02 Score=26.41 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=44.2
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHH
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALE 175 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~ 175 (405)
|++=++.++.+|+++. =+.|++.--..-|.- + ....+.++...+.||+++|.|+ +| |.|.+
T Consensus 40 Wq~~~~~~~~~G~~tL--ivQWt~yG~~~fg~~--~--g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q 100 (296)
T PRK09936 40 WQGLWSQLRLQGFDTL--VVQWTRYGDADFGGQ--R--GWLAKRLAAAQQAGLKLVVGLY-AD-PEFFM 100 (296)
T ss_pred HHHHHHHHHHcCCcEE--EEEeeeccCCCcccc--h--HHHHHHHHHHHHcCCEEEEccc-CC-hHHHH
Confidence 6777889999999986 357988821111222 2 3689999999999999999996 55 44443
No 172
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=30.17 E-value=6e+02 Score=25.82 Aligned_cols=192 Identities=18% Similarity=0.164 Sum_probs=105.8
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcH----------HHH-----Hh--------------cCCCC-----
Q 015517 137 GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPE----------ALE-----KK--------------YNGLL----- 182 (405)
Q Consensus 137 g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~----------~l~-----~~--------------yggw~----- 182 (405)
+-.|.+-+.-++++.+.++++|-+.++=|+|-+--. .+. .. ..+-.
T Consensus 71 ~l~~d~~i~~~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt 150 (362)
T PRK10605 71 GLHSPEQIAAWKKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALE 150 (362)
T ss_pred cccCHHHHHHHHHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCC
Confidence 567888999999999999999999999999943210 000 00 00000
Q ss_pred ---ChHHHHHHHHHHHHHHHHcC-CCcceEEeccccchhhcccCCCCCC-CCCCCCcCCCcccCCCCCChHHHHHHHHHH
Q 015517 183 ---SKRVVKDFADYADFCFKTFG-DRVKNWMTFNEPRVVAALGYDNGFF-APGRCSKAFGNCTVGNSATEPYIVAHNLIL 257 (405)
Q Consensus 183 ---~~~~~~~F~~ya~~~~~~fg-d~V~~w~t~NEp~~~~~~gy~~g~~-~Pg~~~~~~~~~~~~~~~~~~~~~~hn~ll 257 (405)
=.++++.|++=|+.+.+ -| |-| .+.+-.||+...| .|....- .|-- |. .+-|-+.
T Consensus 151 ~~eI~~ii~~f~~AA~rA~~-AGfDGV---------EIh~ahGyLl~qFLSp~~N~R--tDeY-GG-------slENR~R 210 (362)
T PRK10605 151 LEEIPGIVNDFRQAIANARE-AGFDLV---------ELHSAHGYLLHQFLSPSSNQR--TDQY-GG-------SVENRAR 210 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCEE---------EEcccccchHHHhcCCcCCCC--CCcC-CC-------cHHHHHH
Confidence 04578888887766554 33 434 2456778887654 3421100 0111 11 1335555
Q ss_pred HHHHHHHHHHHHhcccCCceEEEEecCcee---ecCCCCHHH--HHHHHHHHHhhcccccchhhcC------cCChhhHh
Q 015517 258 SHAAAVQRYRQKYEQKQKGRIGILLDFVWY---EPLTRSKAD--NYAAQRARDFHVGWFIHPIVYG------EYPKTMQN 326 (405)
Q Consensus 258 AHA~Av~~~r~~~~~~~~~kIGi~~~~~~~---~P~s~~~~D--~~AA~~~~~~~~~~flDpi~~G------~YP~~~~~ 326 (405)
---++++.+|+.... + .||+-++..-. .+...+.++ +..++..... ---+++.- .| .|+..+.+
T Consensus 211 f~~Eiv~aVr~~vg~--~-~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~-giD~i~vs-~~~~~~~~~~~~~~~~ 285 (362)
T PRK10605 211 LVLEVVDAGIAEWGA--D-RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKR-GIAYLHMS-EPDWAGGEPYSDAFRE 285 (362)
T ss_pred HHHHHHHHHHHHcCC--C-eEEEEECCccccccCCCCCCHHHHHHHHHHHHHHc-CCCEEEec-cccccCCccccHHHHH
Confidence 556777788876542 2 59998876432 222234444 4444444322 01233332 12 23333434
Q ss_pred Hhhcc--CC-----CCCHHHHHHh--cCCCcEEEec
Q 015517 327 IVGNR--LP-----KFTKEEVKMV--KGSIDFVGIN 353 (405)
Q Consensus 327 ~l~~~--lp-----~ft~ed~~~i--kgs~DFiGiN 353 (405)
.+++. .| .+|+++.+.+ .|.+|++|+-
T Consensus 286 ~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~V~~g 321 (362)
T PRK10605 286 KVRARFHGVIIGAGAYTAEKAETLIGKGLIDAVAFG 321 (362)
T ss_pred HHHHHCCCCEEEeCCCCHHHHHHHHHcCCCCEEEEC
Confidence 45433 12 3578777765 3889999986
No 173
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=30.16 E-value=1.5e+02 Score=31.01 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=38.9
Q ss_pred hHHHHHHHHhCCCCEEEecc-ccc-ccccCCCCCCChhHHHHHHHHHHHHHHCCC-EEEEEcCCCCCc
Q 015517 107 YKEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGI-TPYANLYHYDLP 171 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~~l~~y~~~id~l~~~gI-~p~vtL~H~d~P 171 (405)
-+|.+++|+++|++.+.+++ +=+ ++.-.-...-+ .+-..+.|+.+++.|+ .+.++|. +++|
T Consensus 150 t~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQP---FEFTFALVEAARELGFTSINIDLI-YGLP 213 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCCcEEEEEE-ccCC
Confidence 57899999999999777766 222 11111101222 3456788999999999 5556663 4555
No 174
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=29.99 E-value=1.6e+02 Score=31.34 Aligned_cols=91 Identities=13% Similarity=0.109 Sum_probs=53.0
Q ss_pred HHHHHHHHhCCCCEEEecccccccccCC---CCCCChhHHHHHHHHHHHHHHCCC-EEEEEcCCCCCcHHHHHhcCCCCC
Q 015517 108 KEDVDIMANLNFDAYRFSISWSRIFPYG---TGKVNWKGVAYYNQLINYLLKRGI-TPYANLYHYDLPEALEKKYNGLLS 183 (405)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi~Wsri~P~~---~g~~n~~~l~~y~~~id~l~~~gI-~p~vtL~H~d~P~~l~~~yggw~~ 183 (405)
+|-++.|+++|++ |+||.-.-.-++- -|.. -..+-..+.++.+++.|+ .+-++|. +++|.
T Consensus 269 ~e~L~~Lk~~Gv~--RISIGvQS~~d~vLk~igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI-~GLPg----------- 332 (488)
T PRK08207 269 EEKLEVLKKYGVD--RISINPQTMNDETLKAIGRH--HTVEDIIEKFHLAREMGFDNINMDLI-IGLPG----------- 332 (488)
T ss_pred HHHHHHHHhcCCC--eEEEcCCcCCHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCeEEEEEE-eCCCC-----------
Confidence 6789999999999 5555433332221 1221 123557889999999999 5556664 56662
Q ss_pred hHHHHHHHHHHHHHHHHcCCCcceEEeccccc
Q 015517 184 KRVVKDFADYADFCFKTFGDRVKNWMTFNEPR 215 (405)
Q Consensus 184 ~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEp~ 215 (405)
++.+.|.+-.+.+.+-=-+.+......=+|.
T Consensus 333 -Et~ed~~~tl~~l~~L~pd~isv~~L~i~~g 363 (488)
T PRK08207 333 -EGLEEVKHTLEEIEKLNPESLTVHTLAIKRA 363 (488)
T ss_pred -CCHHHHHHHHHHHHhcCcCEEEEEeceEcCC
Confidence 2345566655554433224455444433343
No 175
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=29.62 E-value=65 Score=28.70 Aligned_cols=62 Identities=10% Similarity=-0.041 Sum_probs=41.8
Q ss_pred ccchHHHHHHHHhCCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHCCCEEEEEc
Q 015517 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 104 y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~~l~~y~~~id~l~~~gI~p~vtL 165 (405)
....++-+++++.+|.+.+++...+-...+... ..--....+.++.+.+.+.++|+++.+=.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 566888999999999999999976411111110 11112346678888888999998877654
No 176
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=29.52 E-value=3.9e+02 Score=28.46 Aligned_cols=94 Identities=19% Similarity=0.374 Sum_probs=56.5
Q ss_pred hHHH-HHHHHhCCCCEEEec-------ccccc-cccCCC-----------CCCChhHHHHHHHHHHHHHHCCCEEEEEcC
Q 015517 107 YKED-VDIMANLNFDAYRFS-------ISWSR-IFPYGT-----------GKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (405)
Q Consensus 107 y~eD-i~l~~~lG~~~~Rfs-------i~Wsr-i~P~~~-----------g~~n~~~l~~y~~~id~l~~~gI~p~vtL~ 166 (405)
++.| ++++|++.+...|+. -.|.. |-|... -+-|+=| -+++++.|+..|.+|++.+.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~G---t~EF~~~~e~iGaep~~avN 126 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFG---THEFMDWCELIGAEPYIAVN 126 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccccc---HHHHHHHHHHhCCceEEEEe
Confidence 3555 689999999998853 13432 111110 0122333 47899999999999999985
Q ss_pred CCCCcHHHHHhcCCCCChHHHHHHHHHHH--------HHHHHcCC----CcceEEeccccc
Q 015517 167 HYDLPEALEKKYNGLLSKRVVKDFADYAD--------FCFKTFGD----RVKNWMTFNEPR 215 (405)
Q Consensus 167 H~d~P~~l~~~yggw~~~~~~~~F~~ya~--------~~~~~fgd----~V~~w~t~NEp~ 215 (405)
= |. ..-+....|.+||. ..-+..|- .||+|.+=||..
T Consensus 127 ~-----------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~ 175 (501)
T COG3534 127 L-----------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMD 175 (501)
T ss_pred c-----------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccC
Confidence 2 11 22233445555542 22334443 499999999974
No 177
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=29.49 E-value=2.3e+02 Score=28.44 Aligned_cols=64 Identities=20% Similarity=0.475 Sum_probs=45.0
Q ss_pred chHHHHHHHHhCCCCEEEeccc-----------ccccccCC---------CCCCChhHHHHHHHHHHHHHHCCCEEEEEc
Q 015517 106 RYKEDVDIMANLNFDAYRFSIS-----------WSRIFPYG---------TGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~-----------Wsri~P~~---------~g~~n~~~l~~y~~~id~l~~~gI~p~vtL 165 (405)
..++-|+.|+..++|.+-+-++ ++++-..+ .|.+-. +=++++++-++++||++|.-+
T Consensus 19 ~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 19 EVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHHHcCCEEEEec
Confidence 4688899999999998776662 33332211 022333 347999999999999999877
Q ss_pred CCCCCcHHHH
Q 015517 166 YHYDLPEALE 175 (405)
Q Consensus 166 ~H~d~P~~l~ 175 (405)
|+|....
T Consensus 96 ---D~PGH~~ 102 (329)
T cd06568 96 ---DMPGHTN 102 (329)
T ss_pred ---CCcHHHH
Confidence 7886654
No 178
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=29.13 E-value=1.1e+02 Score=29.43 Aligned_cols=60 Identities=3% Similarity=0.065 Sum_probs=40.4
Q ss_pred ccchHHHHHHHHhCCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHCCCEEEEEc
Q 015517 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 104 y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g~~n~~~l~~y~~~id~l~~~gI~p~vtL 165 (405)
-.++++-+++++++|.+.+++.-. +..+... .+.-...++.++++++.++++||++.+=.
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 445788899999999999998521 1111110 11122346778888999999999888754
No 179
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=28.97 E-value=2.2e+02 Score=29.32 Aligned_cols=84 Identities=21% Similarity=0.396 Sum_probs=55.0
Q ss_pred HHHHHHHHhC-CCCEEEecc--cccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEE-EEcCCCCCcHHHHHhcCCCCC
Q 015517 108 KEDVDIMANL-NFDAYRFSI--SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLLS 183 (405)
Q Consensus 108 ~eDi~l~~~l-G~~~~Rfsi--~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~-vtL~H~d~P~~l~~~yggw~~ 183 (405)
.+|++.++.+ ++. .++++ .|+.. .| +.++.+.++++||+.. ++...|..|.+ ++|.+.|
T Consensus 43 ~~d~~~v~~L~~~~-~~v~lH~~~d~~-------~d------~~~~~~~l~~~GL~v~~i~p~~f~~~~~---~~GSLt~ 105 (378)
T TIGR02635 43 IEDAALVHRLTGIC-PTVALHIPWDRV-------ED------YEELARYAEELGLKIGAINPNLFQDDDY---KFGSLTH 105 (378)
T ss_pred HHHHHHHHhhcCCC-CceeeccCCccc-------cC------HHHHHHHHHHcCCceeeeeCCccCCccc---CCCCCCC
Confidence 6777777776 555 55555 44222 22 6888888999999998 77776655543 3467776
Q ss_pred h--HHHHHHHHHHHHH---HHHcCCC-cceE
Q 015517 184 K--RVVKDFADYADFC---FKTFGDR-VKNW 208 (405)
Q Consensus 184 ~--~~~~~F~~ya~~~---~~~fgd~-V~~w 208 (405)
+ ++.+.-.++.+.| ++++|.. |..|
T Consensus 106 pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW 136 (378)
T TIGR02635 106 PDKRIRRKAIDHLLECVDIAKKTGSKDISLW 136 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 5 4666667777666 4678863 4444
No 180
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=28.77 E-value=2.7e+02 Score=28.19 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=50.1
Q ss_pred HHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcH
Q 015517 110 DVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPE 172 (405)
Q Consensus 110 Di~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~ 172 (405)
+.+.+|++|.+++.|=+-|. |+.+..+|..-.++.+++.++|++.+|--++=+..+|.+.
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~ 170 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI 170 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC
Confidence 36889999999999988775 3433568888999999999999999999999887776553
No 181
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=28.72 E-value=2.1e+02 Score=22.38 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=32.2
Q ss_pred HHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEc
Q 015517 112 DIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 112 ~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL 165 (405)
+.++.+|+.++|-| . +..|.+-+.+++..|+ .|..+.+|.
T Consensus 27 ~~~~~~G~~~iRGS--------s-----~rgg~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 27 RVLERFGFRTIRGS--------S-----SRGGARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHcCCCeEEeC--------C-----CCcHHHHHHHHHHHHH-CCCeEEEeC
Confidence 78889999999999 2 2345677899999999 788887776
No 182
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=28.38 E-value=1.7e+02 Score=28.62 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=54.5
Q ss_pred HHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCC----cHHHHHhcCCCCChHH
Q 015517 111 VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL----PEALEKKYNGLLSKRV 186 (405)
Q Consensus 111 i~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~----P~~l~~~yggw~~~~~ 186 (405)
.+.+++.+-+.=-++..|-.|-|++. +... ...++++.++++|+++++.+..++- +.-+.. --.+++.
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g~--~~~~---~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~---~l~~~~~ 87 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADGT--LTGL---PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA---VLSNPEA 87 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCCC--CCCC---CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH---HhcCHHH
Confidence 56666666666667788888877752 3221 2368999999999999999976541 111110 1235666
Q ss_pred HHHHHHHHHHHHHHcC
Q 015517 187 VKDFADYADFCFKTFG 202 (405)
Q Consensus 187 ~~~F~~ya~~~~~~fg 202 (405)
.+.|++=+-.+++++|
T Consensus 88 r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 88 RQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 7777777666677765
No 183
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=28.04 E-value=2.4e+02 Score=34.14 Aligned_cols=70 Identities=13% Similarity=0.287 Sum_probs=50.0
Q ss_pred ccccchHHHHHHHHhCCCCEEEecccccccccCCC-C---------CCCh------hHHHHHHHHHHHHHHC-CCEEEEE
Q 015517 102 DQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-G---------KVNW------KGVAYYNQLINYLLKR-GITPYAN 164 (405)
Q Consensus 102 d~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~-g---------~~n~------~~l~~y~~~id~l~~~-gI~p~vt 164 (405)
.-+..|++.++.++++|+|++-|. -|+|.|. + ++|+ .+.+=..++|+++.+. ||..+++
T Consensus 129 G~~~~w~~~L~~ik~lGyN~Ihft----PI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilD 204 (1464)
T TIGR01531 129 GPLSEWEPRLRVAKEKGYNMIHFT----PLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITD 204 (1464)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeC----CCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 346779999999999999998875 4554441 1 2333 2445579999999996 9999987
Q ss_pred --cCC--CCCcHHHHH
Q 015517 165 --LYH--YDLPEALEK 176 (405)
Q Consensus 165 --L~H--~d~P~~l~~ 176 (405)
+.| +|.| |+.+
T Consensus 205 vV~NHTa~ds~-Wl~e 219 (1464)
T TIGR01531 205 IVFNHTANNSP-WLLE 219 (1464)
T ss_pred eeecccccCCH-HHHh
Confidence 445 4444 7763
No 184
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=27.86 E-value=1.8e+02 Score=29.43 Aligned_cols=63 Identities=22% Similarity=0.313 Sum_probs=43.8
Q ss_pred chHHHHHHHHhCCCCEEEeccccc---ccc----cC----C----CCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCC
Q 015517 106 RYKEDVDIMANLNFDAYRFSISWS---RIF----PY----G----TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL 170 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Ws---ri~----P~----~----~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~ 170 (405)
..++-|+.|+..++|.+.+=++=. ||+ |. | .|.+-. +=++++|+-++++||++|.-+ |+
T Consensus 19 ~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~---~di~eiv~yA~~rgI~vIPEI---D~ 92 (348)
T cd06562 19 SIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTP---EDVKEIVEYARLRGIRVIPEI---DT 92 (348)
T ss_pred HHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECH---HHHHHHHHHHHHcCCEEEEec---cC
Confidence 467778999999999887665321 232 21 1 022333 347999999999999999887 77
Q ss_pred cHHH
Q 015517 171 PEAL 174 (405)
Q Consensus 171 P~~l 174 (405)
|...
T Consensus 93 PGH~ 96 (348)
T cd06562 93 PGHT 96 (348)
T ss_pred chhh
Confidence 7654
No 185
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=27.85 E-value=3.6e+02 Score=32.01 Aligned_cols=99 Identities=17% Similarity=0.250 Sum_probs=59.7
Q ss_pred ccchHHHHHHHHhCCCCEEEeccccc--c---------cc--------------------cCCCCCCCh----hHHHHHH
Q 015517 104 YHRYKEDVDIMANLNFDAYRFSISWS--R---------IF--------------------PYGTGKVNW----KGVAYYN 148 (405)
Q Consensus 104 y~~y~eDi~l~~~lG~~~~Rfsi~Ws--r---------i~--------------------P~~~g~~n~----~~l~~y~ 148 (405)
|.-..+.|+.+|+||++++-+.=..+ . +. |++.-..|+ ..++=++
T Consensus 479 f~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK 558 (1111)
T TIGR02102 479 FAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFK 558 (1111)
T ss_pred HHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHHH
Confidence 44556679999999999997654321 0 00 111000011 1145689
Q ss_pred HHHHHHHHCCCEEEEEcC--CCC--------CcHHHHH---------hcCC----CCChHHHHHHHHHHHHHHHHcC
Q 015517 149 QLINYLLKRGITPYANLY--HYD--------LPEALEK---------KYNG----LLSKRVVKDFADYADFCFKTFG 202 (405)
Q Consensus 149 ~~id~l~~~gI~p~vtL~--H~d--------~P~~l~~---------~ygg----w~~~~~~~~F~~ya~~~~~~fg 202 (405)
+||++|.++||++|+++- |.. .|.|... .++| ..++.+.+.+.+-++..+++|+
T Consensus 559 ~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~ 635 (1111)
T TIGR02102 559 NLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFK 635 (1111)
T ss_pred HHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999853 421 1322110 0111 1346677888888888888886
No 186
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=27.64 E-value=2.3e+02 Score=31.12 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=29.0
Q ss_pred ccchHH-----HHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEE
Q 015517 104 YHRYKE-----DVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYAN 164 (405)
Q Consensus 104 y~~y~e-----Di~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vt 164 (405)
|..|.+ .++++++.|++.+|..-+...+ +-...-|+..++.|.....+
T Consensus 90 y~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~-------------~n~~~~i~~~k~~G~~~~~~ 142 (596)
T PRK14042 90 YRNYADDVVRAFVKLAVNNGVDVFRVFDALNDA-------------RNLKVAIDAIKSHKKHAQGA 142 (596)
T ss_pred cccCChHHHHHHHHHHHHcCCCEEEEcccCcch-------------HHHHHHHHHHHHcCCEEEEE
Confidence 445554 6799999999999976322211 22344455555555555554
No 187
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=27.32 E-value=6.5e+02 Score=25.31 Aligned_cols=141 Identities=17% Similarity=0.164 Sum_probs=79.9
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHH----------HHHhcCC-----CC---ChHHHHHHHHHHHHHH
Q 015517 137 GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEA----------LEKKYNG-----LL---SKRVVKDFADYADFCF 198 (405)
Q Consensus 137 g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~----------l~~~ygg-----w~---~~~~~~~F~~ya~~~~ 198 (405)
+-.+.+.+..++++.+.++++|-+.++=|+|.+.-.. ......+ .. =+++++.|++=|+.+.
T Consensus 73 ~~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~ 152 (337)
T PRK13523 73 GIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAK 152 (337)
T ss_pred ecCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999999999643110 0000000 11 1257888888776665
Q ss_pred HHcC-CCcceEEeccccchhhcccCCCCCC-CCCC--CCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 015517 199 KTFG-DRVKNWMTFNEPRVVAALGYDNGFF-APGR--CSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQ 274 (405)
Q Consensus 199 ~~fg-d~V~~w~t~NEp~~~~~~gy~~g~~-~Pg~--~~~~~~~~~~~~~~~~~~~~~hn~llAHA~Av~~~r~~~~~~~ 274 (405)
+ -| |-| .+.+-.||+...| .|.. +. +.- |.| +-|-+.--.+.++.+|+..
T Consensus 153 ~-aGfDgV---------eih~ahGyLl~qFlSp~~N~Rt----D~y-GGs-------lenR~Rf~~eii~~ir~~~---- 206 (337)
T PRK13523 153 E-AGFDVI---------EIHGAHGYLINEFLSPLSNKRT----DEY-GGS-------PENRYRFLREIIDAVKEVW---- 206 (337)
T ss_pred H-cCCCEE---------EEccccchHHHHhcCCccCCcC----CCC-CCC-------HHHHHHHHHHHHHHHHHhc----
Confidence 4 34 333 2445667776554 2311 11 111 112 2344444445566666653
Q ss_pred CceEEEEecCceeecCCCCHHHH-HHHHHH
Q 015517 275 KGRIGILLDFVWYEPLTRSKADN-YAAQRA 303 (405)
Q Consensus 275 ~~kIGi~~~~~~~~P~s~~~~D~-~AA~~~ 303 (405)
+..||+-++...+.+-..+++|. ..+++.
T Consensus 207 ~~~v~vRis~~d~~~~G~~~~e~~~i~~~l 236 (337)
T PRK13523 207 DGPLFVRISASDYHPGGLTVQDYVQYAKWM 236 (337)
T ss_pred CCCeEEEecccccCCCCCCHHHHHHHHHHH
Confidence 35788888866555543455553 444443
No 188
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=27.21 E-value=74 Score=34.03 Aligned_cols=100 Identities=19% Similarity=0.305 Sum_probs=49.2
Q ss_pred hCCCCEEEecccccccccCC---C---C-----CCCh--hHHHHHHHHHHHHHHC--CCEEEEEcCCCCCcHHHHHh--c
Q 015517 116 NLNFDAYRFSISWSRIFPYG---T---G-----KVNW--KGVAYYNQLINYLLKR--GITPYANLYHYDLPEALEKK--Y 178 (405)
Q Consensus 116 ~lG~~~~Rfsi~Wsri~P~~---~---g-----~~n~--~~l~~y~~~id~l~~~--gI~p~vtL~H~d~P~~l~~~--y 178 (405)
.+|++..|..|-=+..-... + + .++. +-.++--.+|.++++. +|+.+.+- |..|.|+-.. +
T Consensus 111 G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp--WSpP~WMKtn~~~ 188 (496)
T PF02055_consen 111 GIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP--WSPPAWMKTNGSM 188 (496)
T ss_dssp TT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE--S---GGGBTTSSS
T ss_pred CceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec--CCCCHHHccCCcC
Confidence 58999999988333322111 0 1 1111 1112222456655543 47877777 8999998543 1
Q ss_pred --CCCCC----hHHHHHHHHHHHHHHHHcCCC-cceE--Eeccccchh
Q 015517 179 --NGLLS----KRVVKDFADYADFCFKTFGDR-VKNW--MTFNEPRVV 217 (405)
Q Consensus 179 --ggw~~----~~~~~~F~~ya~~~~~~fgd~-V~~w--~t~NEp~~~ 217 (405)
+|.+. ++..+.|++|--..++.|... |+.| .+-|||...
T Consensus 189 ~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~ 236 (496)
T PF02055_consen 189 NGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNG 236 (496)
T ss_dssp CSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGG
T ss_pred cCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCC
Confidence 24443 345667777777777777764 5554 578999864
No 189
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=27.21 E-value=89 Score=26.25 Aligned_cols=52 Identities=21% Similarity=0.170 Sum_probs=37.0
Q ss_pred HHHHHHHHhCCCCEEEecc-ccccc-ccCCCCCCChhHHHHHHHHHHHHHHCCCEE
Q 015517 108 KEDVDIMANLNFDAYRFSI-SWSRI-FPYGTGKVNWKGVAYYNQLINYLLKRGITP 161 (405)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi-~Wsri-~P~~~g~~n~~~l~~y~~~id~l~~~gI~p 161 (405)
++.++.+++.|++.+++|+ +-+.- ..+..+ .....+..-+.++.|+++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCc
Confidence 8999999999999999998 33321 111101 1123466789999999999995
No 190
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=26.81 E-value=4.5e+02 Score=25.66 Aligned_cols=105 Identities=19% Similarity=0.331 Sum_probs=68.2
Q ss_pred chHHHHHHHHhCCCCEEEeccc----------ccc--------------------------cccCCC--CCCChhHHHHH
Q 015517 106 RYKEDVDIMANLNFDAYRFSIS----------WSR--------------------------IFPYGT--GKVNWKGVAYY 147 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~----------Wsr--------------------------i~P~~~--g~~n~~~l~~y 147 (405)
-|+|-+.+.|++|++.+-+||+ |++ -+|-|. ....+++++-.
T Consensus 19 sW~erl~~AK~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM 98 (287)
T COG3623 19 SWLERLALAKELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIM 98 (287)
T ss_pred CHHHHHHHHHHcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccchhhhhhccCCCCCCCHHHHHHHHHHH
Confidence 3788888889999988888863 543 334431 23456788888
Q ss_pred HHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHH---HHHHHHHHcCCCcceEEeccccchhhc
Q 015517 148 NQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFAD---YADFCFKTFGDRVKNWMTFNEPRVVAA 219 (405)
Q Consensus 148 ~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~---ya~~~~~~fgd~V~~w~t~NEp~~~~~ 219 (405)
.+.|....+.||+.| -|--+|. |--=.++++..+|.+ .|-..+++++ -+--..++.-|-+-+.
T Consensus 99 ~KaI~LA~dLGIRtI-QLAGYDV-------YYE~~d~eT~~rFi~g~~~a~~lA~~aq-V~lAvEiMDtpfm~sI 164 (287)
T COG3623 99 EKAIQLAQDLGIRTI-QLAGYDV-------YYEEADEETRQRFIEGLKWAVELAARAQ-VMLAVEIMDTPFMNSI 164 (287)
T ss_pred HHHHHHHHHhCceeE-eecccee-------eeccCCHHHHHHHHHHHHHHHHHHHhhc-cEEEeeecccHHHHHH
Confidence 889999999999876 3333333 222257788888875 4445566664 1234667777765443
No 191
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=26.35 E-value=4e+02 Score=26.64 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=43.0
Q ss_pred HHHHHHHHHCCCEEEEEcCCC---C--CcHHHHHh-------------c-----------CCCCChHHHHHHHHHHHHHH
Q 015517 148 NQLINYLLKRGITPYANLYHY---D--LPEALEKK-------------Y-----------NGLLSKRVVKDFADYADFCF 198 (405)
Q Consensus 148 ~~~id~l~~~gI~p~vtL~H~---d--~P~~l~~~-------------y-----------ggw~~~~~~~~F~~ya~~~~ 198 (405)
+++|++|+++|++.++..+-+ + .|..-+.+ | -.|.|++..+.|.+.-+.+.
T Consensus 67 ~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06604 67 KELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh
Confidence 789999999999988654322 1 23221110 0 13678888888877666554
Q ss_pred HHcCCCcc-eEEeccccchh
Q 015517 199 KTFGDRVK-NWMTFNEPRVV 217 (405)
Q Consensus 199 ~~fgd~V~-~w~t~NEp~~~ 217 (405)
.. -|+ .|+=+|||..+
T Consensus 147 -~~--Gvdg~w~D~~Ep~~~ 163 (339)
T cd06604 147 -DL--GVDGIWNDMNEPAVF 163 (339)
T ss_pred -hC--CCceEeecCCCcccc
Confidence 23 354 58899999865
No 192
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=25.99 E-value=2.9e+02 Score=26.83 Aligned_cols=64 Identities=13% Similarity=0.210 Sum_probs=45.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHcCCCcceEEeccc
Q 015517 136 TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNE 213 (405)
Q Consensus 136 ~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NE 213 (405)
+|.+|.++ ++++|+.+.+.|+..++.+-+- |-+ ..-+.+...+..+.+.+.-+++++.+.-...
T Consensus 13 ~g~iD~~~---~~~~i~~l~~~Gv~Gi~~~Gst----------GE~-~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~ 76 (285)
T TIGR00674 13 DGSVDFAA---LEKLIDFQIENGTDAIVVVGTT----------GES-PTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS 76 (285)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECccC----------ccc-ccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 48999977 6999999999999999987441 111 1123556677777778877888776654443
No 193
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.56 E-value=5.9e+02 Score=24.19 Aligned_cols=53 Identities=19% Similarity=0.124 Sum_probs=35.4
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEE
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYA 163 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~v 163 (405)
+++-++.++++|++.+=+++.=....+.. ..++. ...+.+-+.+.++||++..
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~-~~~~~---~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLAR-LDWSR---EQRLALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhc-cCCCH---HHHHHHHHHHHHcCCceeE
Confidence 78999999999999998864211111111 11233 3467788889999999753
No 194
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=25.37 E-value=2.2e+02 Score=29.33 Aligned_cols=94 Identities=20% Similarity=0.333 Sum_probs=55.5
Q ss_pred hCCCCEEEecccccccccCCCCCCChhHHHHHHHHH--HHHHHCCCEEEEEcCCCCCcHHHHHhc---CC---CCChHHH
Q 015517 116 NLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLI--NYLLKRGITPYANLYHYDLPEALEKKY---NG---LLSKRVV 187 (405)
Q Consensus 116 ~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~i--d~l~~~gI~p~vtL~H~d~P~~l~~~y---gg---w~~~~~~ 187 (405)
++|++..|+.|.=.+.--. |..|. +|+++= ...+..|++++.+- |..|.|+.... || =+.++--
T Consensus 77 ~lg~si~Rv~I~~ndfsl~--g~~d~----w~kels~Ak~~in~g~ivfASP--WspPa~Mktt~~~ngg~~g~Lk~e~Y 148 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG--GSADN----WYKELSTAKSAINPGMIVFASP--WSPPASMKTTNNRNGGNAGRLKYEKY 148 (433)
T ss_pred ccCceEEEEEecccccccC--CCcch----hhhhcccchhhcCCCcEEEecC--CCCchhhhhccCcCCccccccchhHh
Confidence 4788999988765554322 44542 233332 22567888888877 88999987542 33 3444433
Q ss_pred HHHHHHHHHHHHHcCC---CcceEEeccccchh
Q 015517 188 KDFADYADFCFKTFGD---RVKNWMTFNEPRVV 217 (405)
Q Consensus 188 ~~F~~ya~~~~~~fgd---~V~~w~t~NEp~~~ 217 (405)
.+|++|-...+.++++ -+.+--+=|||...
T Consensus 149 a~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~ 181 (433)
T COG5520 149 ADYADYLNDFVLEMKNNGVNLYALSVQNEPDYA 181 (433)
T ss_pred HHHHHHHHHHHHHHHhCCCceeEEeeccCCccc
Confidence 4444444444555554 34456688999754
No 195
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=25.21 E-value=2e+02 Score=27.91 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=33.0
Q ss_pred cccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHH
Q 015517 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYL 154 (405)
Q Consensus 103 ~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l 154 (405)
-....++||+.++++|++-+=|++- +.+|.+|.+.+ .++|+.+
T Consensus 71 E~~~M~~di~~~~~~GadGvV~G~L------~~dg~vD~~~~---~~Li~~a 113 (248)
T PRK11572 71 EFAAMLEDIATVRELGFPGLVTGVL------DVDGHVDMPRM---RKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeE------CCCCCcCHHHH---HHHHHHh
Confidence 3567899999999999999999963 22478998654 6666666
No 196
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=24.92 E-value=97 Score=29.37 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=43.7
Q ss_pred CCcccccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcH
Q 015517 99 VSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPE 172 (405)
Q Consensus 99 ~a~d~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~ 172 (405)
+|.|+.+. ++.+++++++|....-+-|-+.-+.-. =-++|+.|++.|...+++++-.|+|.
T Consensus 7 lAlD~~~~-~~~l~~~~~~~~~~~~ikvg~~~f~~~------------G~~~i~~l~~~~~~i~~D~Kl~Di~~ 67 (230)
T PRK00230 7 VALDFPSK-EEALAFLDQLDPAVLFVKVGMELFTAG------------GPQFVRELKQRGFKVFLDLKLHDIPN 67 (230)
T ss_pred EEcCCCCH-HHHHHHHHhcCCcccEEEEcHHHHHhc------------CHHHHHHHHhcCCCEEEEeehhhccc
Confidence 35565554 788999999997655455544444311 14678899988999999999889984
No 197
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=24.88 E-value=28 Score=33.87 Aligned_cols=72 Identities=13% Similarity=0.193 Sum_probs=41.0
Q ss_pred HHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHcCCCcceEEeccccchhhcccCCCCCC
Q 015517 153 YLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFF 227 (405)
Q Consensus 153 ~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEp~~~~~~gy~~g~~ 227 (405)
-+.++.+.|+++|||||.= ..-+.+....+.++.+.+=|+.--.++-.+--.|---....+.+..||..-.+
T Consensus 76 ~~~a~~~~pl~SlHH~~~~---~PifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy 147 (255)
T PF04646_consen 76 FLEAHPLAPLVSLHHWDSV---DPIFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVY 147 (255)
T ss_pred eeecCCCCceeeeeehhhc---cccCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEE
Confidence 3455568999999999852 22245555666777777755544333322211222223334446678877665
No 198
>PTZ00445 p36-lilke protein; Provisional
Probab=24.87 E-value=1.5e+02 Score=28.30 Aligned_cols=57 Identities=12% Similarity=0.071 Sum_probs=39.9
Q ss_pred HHHHHHhCCCCEEEecccccccccCCCCCCChh---------HHHHHHHHHHHHHHCCCEEEEEcC
Q 015517 110 DVDIMANLNFDAYRFSISWSRIFPYGTGKVNWK---------GVAYYNQLINYLLKRGITPYANLY 166 (405)
Q Consensus 110 Di~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~---------~l~~y~~~id~l~~~gI~p~vtL~ 166 (405)
=++++++.|++++=+.++=+-|--...|-.++. +-.-...++.+|+++||.++|..+
T Consensus 34 ~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 34 FVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 368899999999988876664431111322222 334478899999999999988775
No 199
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=24.78 E-value=5.7e+02 Score=24.28 Aligned_cols=55 Identities=7% Similarity=0.047 Sum_probs=38.8
Q ss_pred cchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHC-CCEEEEE
Q 015517 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKR-GITPYAN 164 (405)
Q Consensus 105 ~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~-gI~p~vt 164 (405)
..+++-+++++++|++.+=+.+......+.. ..+. +..+++.+.+.++ |+...+.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~~i~~~ 65 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR--PLKK---ERAEKFKAIAEEGPSICLSVH 65 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC--CCCH---HHHHHHHHHHHHcCCCcEEEE
Confidence 5689999999999999998888766544432 1233 3467777777777 6665543
No 200
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=24.53 E-value=2.1e+02 Score=28.26 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHcC
Q 015517 146 YYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFG 202 (405)
Q Consensus 146 ~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~fg 202 (405)
-..+.|..|+++|+++++.+--++-. ....++...+.|++....+++.||
T Consensus 61 ~~~~~i~~~q~~G~KVllSiGG~~~~-------~~~~~~~~~~~fa~sl~~~~~~~g 110 (312)
T cd02871 61 EFKADIKALQAKGKKVLISIGGANGH-------VDLNHTAQEDNFVDSIVAIIKEYG 110 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEeCCCCc-------cccCCHHHHHHHHHHHHHHHHHhC
Confidence 35778889999999999998433211 012355667777777777777776
No 201
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=24.18 E-value=3.2e+02 Score=26.40 Aligned_cols=63 Identities=11% Similarity=0.144 Sum_probs=44.4
Q ss_pred CCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHcCCCcceEEecc
Q 015517 136 TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFN 212 (405)
Q Consensus 136 ~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~N 212 (405)
+|.+|+++ +++.|+.|.+.|+..++.+-+- |-. ..-+.+...+..+.+.++-++++....-..
T Consensus 15 dg~iD~~~---~~~~i~~l~~~Gv~gl~v~Gst----------GE~-~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~ 77 (284)
T cd00950 15 DGSVDFDA---LERLIEFQIENGTDGLVVCGTT----------GES-PTLSDEEHEAVIEAVVEAVNGRVPVIAGTG 77 (284)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECCCC----------cch-hhCCHHHHHHHHHHHHHHhCCCCcEEeccC
Confidence 48999977 6899999999999999887542 111 222356777777777787777776554333
No 202
>PRK06256 biotin synthase; Validated
Probab=23.67 E-value=1.3e+02 Score=29.82 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=39.3
Q ss_pred chHHHHHHHHhCCCCEEEecc-cccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEc
Q 015517 106 RYKEDVDIMANLNFDAYRFSI-SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi-~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL 165 (405)
.-+|.++.|+++|++.+-+++ +=+++.+.-...- ..+...+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~---t~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTH---TYEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCC---CHHHHHHHHHHHHHcCCeeccCe
Confidence 567899999999999998876 3223433321111 23557789999999999865543
No 203
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=23.04 E-value=1.2e+02 Score=30.64 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=32.5
Q ss_pred ChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhc
Q 015517 140 NWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKY 178 (405)
Q Consensus 140 n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~y 178 (405)
|++-+.+++.+|.+|.++|.++++|.-.++.=.-|-+.|
T Consensus 9 ~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~y 47 (335)
T PF04007_consen 9 HPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLY 47 (335)
T ss_pred CchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHc
Confidence 566789999999999999999999998887655555554
No 204
>PRK10426 alpha-glucosidase; Provisional
Probab=22.70 E-value=7.1e+02 Score=27.52 Aligned_cols=105 Identities=20% Similarity=0.210 Sum_probs=63.2
Q ss_pred hHHHHHHHHhCCCC--EEEecccccccccCCCC-------CCChhHHHHHHHHHHHHHHCCCEEEEEcCCC---CCcHHH
Q 015517 107 YKEDVDIMANLNFD--AYRFSISWSRIFPYGTG-------KVNWKGVAYYNQLINYLLKRGITPYANLYHY---DLPEAL 174 (405)
Q Consensus 107 y~eDi~l~~~lG~~--~~Rfsi~Wsri~P~~~g-------~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~---d~P~~l 174 (405)
..+-++.+++.|+- ++=+. .|........| .+|.+-.-=.+++|++|++.|++.++.+.-+ +.|..-
T Consensus 223 v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~ 301 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCE 301 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEe-cccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHH
Confidence 44556778888764 44444 67644221101 2343332234889999999999988876532 334332
Q ss_pred HHh---c------------------C---CCCChHHHHHHHHHHHHHHHHcCCCcce-EEecccc
Q 015517 175 EKK---Y------------------N---GLLSKRVVKDFADYADFCFKTFGDRVKN-WMTFNEP 214 (405)
Q Consensus 175 ~~~---y------------------g---gw~~~~~~~~F~~ya~~~~~~fgd~V~~-w~t~NEp 214 (405)
+.+ | + .+.|++..+.|.+..+......| |+. |.=+||+
T Consensus 302 e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 302 EAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 211 0 0 16789999999887765555565 665 5788994
No 205
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=22.33 E-value=2.3e+02 Score=26.51 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=29.2
Q ss_pred ccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHH
Q 015517 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLL 155 (405)
Q Consensus 104 y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~ 155 (405)
....++||+.++++|.+.+=|+. +-. +|.+|.+. .+++++.+.
T Consensus 71 ~~~M~~dI~~~~~~GadG~VfG~-----L~~-dg~iD~~~---~~~Li~~a~ 113 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGADGFVFGA-----LTE-DGEIDEEA---LEELIEAAG 113 (201)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE-------BET-TSSB-HHH---HHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCeeEEEe-----ECC-CCCcCHHH---HHHHHHhcC
Confidence 45688999999999999999984 322 37899855 466666654
No 206
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=22.21 E-value=1.1e+02 Score=31.59 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=43.1
Q ss_pred CCcccccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEE
Q 015517 99 VSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYAN 164 (405)
Q Consensus 99 ~a~d~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vt 164 (405)
.|+|-+-=+++-|+..++.|++++ |+|-| .++. +++|+.+.++||.-+.|
T Consensus 334 lASDAFFPF~D~Id~Aa~~GV~aI--------iQPGG--SiRD------~evI~aane~giaMvfT 383 (390)
T PRK07106 334 LGSDAFFPFGDNIERAAKSGVKYI--------AQPGG--SIRD------DNVIETCNKYGMTMAFT 383 (390)
T ss_pred EEecccCCCCchHHHHHHcCCEEE--------ECCCC--CCCc------HHHHHHHHHhCCEEEEC
Confidence 478988888999999999999997 88875 5554 78999999999998876
No 207
>PRK09389 (R)-citramalate synthase; Provisional
Probab=22.08 E-value=1.5e+02 Score=31.56 Aligned_cols=106 Identities=11% Similarity=0.015 Sum_probs=69.6
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCC-CCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCC--CcHHHHHh------
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYD--LPEALEKK------ 177 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~-~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d--~P~~l~~~------ 177 (405)
-++|++.+.+.|++.+++.++-|.+.=.. -+.--++.++...+.+..+++.|+++.+++-... -|..+.+-
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~ 154 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIE 154 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHh
Confidence 48999999999999999999777664221 1333456788899999999999999988876432 13333211
Q ss_pred c----------CCCCChHHHHHHHHHHHHHHHHcCCCcc-eEEeccccchh
Q 015517 178 Y----------NGLLSKRVVKDFADYADFCFKTFGDRVK-NWMTFNEPRVV 217 (405)
Q Consensus 178 y----------ggw~~~~~~~~F~~ya~~~~~~fgd~V~-~w~t~NEp~~~ 217 (405)
. -|...| ..+.++.+.+.++++ ++ -...-|-..+-
T Consensus 155 ~Ga~~i~l~DTvG~~~P---~~~~~lv~~l~~~~~--v~l~~H~HND~GlA 200 (488)
T PRK09389 155 AGADRICFCDTVGILTP---EKTYELFKRLSELVK--GPVSIHCHNDFGLA 200 (488)
T ss_pred CCCCEEEEecCCCCcCH---HHHHHHHHHHHhhcC--CeEEEEecCCccHH
Confidence 1 233343 455566666666664 33 35567776654
No 208
>PTZ00445 p36-lilke protein; Provisional
Probab=22.00 E-value=1.2e+02 Score=28.89 Aligned_cols=50 Identities=20% Similarity=0.273 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHCCCEEEEEcCCCCCcHHHHH-hcCCCCChH---------HHHHHHHHHHHHHH
Q 015517 146 YYNQLINYLLKRGITPYANLYHYDLPEALEK-KYNGLLSKR---------VVKDFADYADFCFK 199 (405)
Q Consensus 146 ~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~-~yggw~~~~---------~~~~F~~ya~~~~~ 199 (405)
--+.+++.|++.||+.+++= +|.= |.. --|||.++. ..++|....+.+-+
T Consensus 30 ~~~~~v~~L~~~GIk~Va~D--~DnT--lI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~ 89 (219)
T PTZ00445 30 SADKFVDLLNECGIKVIASD--FDLT--MITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN 89 (219)
T ss_pred HHHHHHHHHHHcCCeEEEec--chhh--hhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHH
Confidence 35788999999999999763 2322 111 128899887 45566666555443
No 209
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=21.99 E-value=8.1e+02 Score=24.56 Aligned_cols=144 Identities=19% Similarity=0.113 Sum_probs=79.9
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCC---------cHHHHHhcCC-----CCC---hHHHHHHHHHHHHHHH
Q 015517 137 GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL---------PEALEKKYNG-----LLS---KRVVKDFADYADFCFK 199 (405)
Q Consensus 137 g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~---------P~~l~~~ygg-----w~~---~~~~~~F~~ya~~~~~ 199 (405)
+-.+++.+..++++++.++++|-+.++=|.|.+. |........+ ... .++++.|++=|+.+.+
T Consensus 69 ~~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~ 148 (353)
T cd02930 69 VLNSPRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALARE 148 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999543 1000000000 111 3467888877766544
Q ss_pred HcCCCcceEEeccccchhhcccCCCCCC-CCC---CCCcCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 015517 200 TFGDRVKNWMTFNEPRVVAALGYDNGFF-APG---RCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQK 275 (405)
Q Consensus 200 ~fgd~V~~w~t~NEp~~~~~~gy~~g~~-~Pg---~~~~~~~~~~~~~~~~~~~~~~hn~llAHA~Av~~~r~~~~~~~~ 275 (405)
.==|-|. +..-.||+...| .|. +.+. - |.| +-|-+.--.+.++.+|+... .+
T Consensus 149 aGfDgVe---------ih~ahGyLl~qFlsp~~N~RtD~-----y-GGs-------lenR~r~~~eiv~aIR~~vG--~d 204 (353)
T cd02930 149 AGYDGVE---------IMGSEGYLINQFLAPRTNKRTDE-----W-GGS-------FENRMRFPVEIVRAVRAAVG--ED 204 (353)
T ss_pred cCCCEEE---------EecccchHHHHhcCCccCCCcCc-----c-CCC-------HHHHhHHHHHHHHHHHHHcC--CC
Confidence 3113342 345567776554 231 1111 1 111 22334444566677777543 25
Q ss_pred ceEEEEecCceeecCCCCHHH-HHHHHHHH
Q 015517 276 GRIGILLDFVWYEPLTRSKAD-NYAAQRAR 304 (405)
Q Consensus 276 ~kIGi~~~~~~~~P~s~~~~D-~~AA~~~~ 304 (405)
..|++-++...+.+-..+.++ +..+++..
T Consensus 205 ~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le 234 (353)
T cd02930 205 FIIIYRLSMLDLVEGGSTWEEVVALAKALE 234 (353)
T ss_pred ceEEEEecccccCCCCCCHHHHHHHHHHHH
Confidence 678888876544433334443 34444443
No 210
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=21.81 E-value=5.9e+02 Score=22.85 Aligned_cols=24 Identities=13% Similarity=-0.010 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCCcce
Q 015517 184 KRVVKDFADYADFCFKTFGDRVKN 207 (405)
Q Consensus 184 ~~~~~~F~~ya~~~~~~fgd~V~~ 207 (405)
....+...+|++.+-++.|-++-.
T Consensus 99 ~~~~~~~~~f~~~v~~~~G~~~~i 122 (184)
T cd06525 99 DELNDYVLRFIEEFEKLSGLKVGI 122 (184)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEE
Confidence 334566667777766666655433
No 211
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=21.75 E-value=3.9e+02 Score=27.05 Aligned_cols=92 Identities=16% Similarity=0.249 Sum_probs=54.4
Q ss_pred HHHHHHHHhCCCCEEEecc-ccc-ccccCCCCCCChhHHHHHHHHHHHHHHCCCE-EEEEcCCCCCcHHHHHhcCCCCCh
Q 015517 108 KEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGIT-PYANLYHYDLPEALEKKYNGLLSK 184 (405)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~~l~~y~~~id~l~~~gI~-p~vtL~H~d~P~~l~~~yggw~~~ 184 (405)
+|.+++|+++|++.+-+++ +=+ ++...-....+ .+-+.+.++.+++.|+. +-++|. +++|.
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~---~~~~~~ai~~lr~~G~~~v~~dlI-~GlPg------------ 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHT---IQDSKEAINLLHKNGIYNISCDFL-YCLPI------------ 166 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ecCCC------------
Confidence 7899999999999665555 221 22222111223 24578899999999997 556654 45662
Q ss_pred HHHHHHHHHHHHHHHHcC-CCcceEEeccccch
Q 015517 185 RVVKDFADYADFCFKTFG-DRVKNWMTFNEPRV 216 (405)
Q Consensus 185 ~~~~~F~~ya~~~~~~fg-d~V~~w~t~NEp~~ 216 (405)
++.+.|.+=.+.+.+ .+ +.|..+...=||..
T Consensus 167 qt~e~~~~tl~~~~~-l~p~~is~y~L~~~~gT 198 (353)
T PRK05904 167 LKLKDLDEVFNFILK-HKINHISFYSLEIKEGS 198 (353)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEEeeEecCCC
Confidence 234556555555433 44 45555554446653
No 212
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.65 E-value=1.7e+02 Score=27.93 Aligned_cols=61 Identities=3% Similarity=0.027 Sum_probs=39.5
Q ss_pred ccchHHHHHHHHhCCCCEEEeccccccc-ccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcC
Q 015517 104 YHRYKEDVDIMANLNFDAYRFSISWSRI-FPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (405)
Q Consensus 104 y~~y~eDi~l~~~lG~~~~Rfsi~Wsri-~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~ 166 (405)
-.+.++=|+.++++|.+.+|+. ..... .|.. ...-...++.++.+.+.+.++||+..+=.+
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~-~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLA-GYDVYYEEKS-EETRQRFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEC-Cccccccccc-HHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 3456777899999999999974 11111 1111 111123456788889999999998877443
No 213
>PRK01060 endonuclease IV; Provisional
Probab=21.62 E-value=3.6e+02 Score=25.65 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=36.7
Q ss_pred hHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEE
Q 015517 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITP 161 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p 161 (405)
+++-++.++++|++.+=+.+.-++.... +..+.+- .+++-+.+.++||++
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~--~~~~~~~---~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR--KPLEELN---IEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC--CCCCHHH---HHHHHHHHHHcCCCC
Confidence 7888999999999999998766654432 3455533 455666788999984
No 214
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=21.56 E-value=1.3e+02 Score=32.16 Aligned_cols=54 Identities=20% Similarity=0.365 Sum_probs=44.9
Q ss_pred CCcccccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEE-cCCC
Q 015517 99 VSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYAN-LYHY 168 (405)
Q Consensus 99 ~a~d~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vt-L~H~ 168 (405)
.|+|-+-=+.+-|+.+++.|++++ |+|.| .++. +++|+.+.++||.-+.| +-||
T Consensus 459 ~ASDAFFPF~D~i~~aA~aGi~aI--------IqPGG--SirD------~eVI~aAde~giaMvfTg~RhF 513 (515)
T COG0138 459 LASDAFFPFPDGIDAAAKAGIKAI--------IQPGG--SIRD------QEVIAAADEHGIAMVFTGVRHF 513 (515)
T ss_pred EeecccCCCcchHHHHHHcCCeEE--------ECCCC--cccc------HHHHHHHHhcCcEEEEcccccc
Confidence 478888888999999999999997 88875 5554 78999999999998887 3344
No 215
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=21.48 E-value=7.1e+02 Score=23.68 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=38.1
Q ss_pred chHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEE
Q 015517 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYA 163 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~v 163 (405)
-+.|-+++++++|++.+=+++.-....+.. -.... .....+-+.+.++||++..
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~-~~~~~---~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVDETDDRLSR-LDWSR---EQRLALVNAIIETGVRIPS 70 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCccchhhc-cCCCH---HHHHHHHHHHHHcCCCcee
Confidence 388999999999999999976543322222 11222 4467888899999999753
No 216
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=21.48 E-value=56 Score=20.09 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=11.8
Q ss_pred HHHHHHHHHHCCCEE
Q 015517 147 YNQLINYLLKRGITP 161 (405)
Q Consensus 147 y~~~id~l~~~gI~p 161 (405)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 467788888888887
No 217
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=21.46 E-value=4.2e+02 Score=25.41 Aligned_cols=64 Identities=13% Similarity=0.210 Sum_probs=43.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHcCCCcceEEeccc
Q 015517 136 TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNE 213 (405)
Q Consensus 136 ~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yggw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NE 213 (405)
+|.+|+++ ++++|+.|.+.|+.-++.+-+- |-+ ..-+.++..+.++.+.+.-+++++...-...
T Consensus 12 dg~iD~~~---~~~~i~~l~~~Gv~gi~~~Gst----------GE~-~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~ 75 (281)
T cd00408 12 DGEVDLDA---LRRLVEFLIEAGVDGLVVLGTT----------GEA-PTLTDEERKEVIEAVVEAVAGRVPVIAGVGA 75 (281)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECCCC----------ccc-ccCCHHHHHHHHHHHHHHhCCCCeEEEecCC
Confidence 48999977 6999999999999998877441 111 1122456677777777777777765544333
No 218
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=21.33 E-value=3.1e+02 Score=32.65 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=18.3
Q ss_pred ccchHHHH-----HHHHhCCCCEEEec
Q 015517 104 YHRYKEDV-----DIMANLNFDAYRFS 125 (405)
Q Consensus 104 y~~y~eDi-----~l~~~lG~~~~Rfs 125 (405)
|..|.+|+ +..++-|++.+|+-
T Consensus 619 y~~ypd~vv~~f~~~~~~~Gidifrif 645 (1143)
T TIGR01235 619 YTNYPDNVVKYFVKQAAQGGIDIFRVF 645 (1143)
T ss_pred ccCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 77788884 78889999999974
No 219
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=21.20 E-value=2.1e+02 Score=27.33 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=46.0
Q ss_pred cccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcC
Q 015517 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (405)
Q Consensus 103 ~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~ 166 (405)
|..+...=++++++.|++-+.+= ++-+|+...-.+++.|.+++.+.|.+.|+-.+.|+.
T Consensus 44 h~~Hl~al~~~a~~~gv~~V~vH-----~f~DGRDt~P~S~~~yl~~l~~~l~~~~~g~IAsv~ 102 (223)
T PF06415_consen 44 HIDHLFALIKLAKKQGVKKVYVH-----AFTDGRDTPPKSALKYLEELEEKLAEIGIGRIASVS 102 (223)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEE-----EEE-SSSS-TTTHHHHHHHHHHHHHHHTCTEEEEEE
T ss_pred cHHHHHHHHHHHHHcCCCEEEEE-----EecCCCCCCcchHHHHHHHHHHHHHhhCCceEEEEe
Confidence 56667888999999999977765 556776667778999999999999999888888884
No 220
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=21.11 E-value=2.2e+02 Score=25.88 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=47.3
Q ss_pred CCCcccccchHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEE
Q 015517 98 DVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYAN 164 (405)
Q Consensus 98 ~~a~d~y~~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vt 164 (405)
.+|.|.+-.-...+..+..+.++.++++.++-+-.... ...-...+.+++.++..|++++++
T Consensus 148 ~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~-----~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 148 RIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTD-----PEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred EEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccC-----hhHHHHHHHHHHHHHHCCCeEEEe
Confidence 46777666667788999999999999998776554332 223466889999999999999876
No 221
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=20.87 E-value=1.3e+02 Score=25.95 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=39.0
Q ss_pred hHHHHHHHHhCCCCEEEeccccc-ccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEc
Q 015517 107 YKEDVDIMANLNFDAYRFSISWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (405)
Q Consensus 107 y~eDi~l~~~lG~~~~Rfsi~Ws-ri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL 165 (405)
-+++++.|+++|+..+.+|++-. .-.-.... -....++.+-+.|+.+++.|+...+++
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 145 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVADKIR-GSGESFKERLEALKELREAGLGLSTTL 145 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHHHHh-cCCcCHHHHHHHHHHHHHcCCCceEEE
Confidence 48999999999999999998433 22111100 011234567888888898888877666
No 222
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=20.80 E-value=3.8e+02 Score=26.79 Aligned_cols=85 Identities=11% Similarity=0.144 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCCEEEecc--------cccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcHHHHHhcC
Q 015517 108 KEDVDIMANLNFDAYRFSI--------SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYN 179 (405)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi--------~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~~l~~~yg 179 (405)
.+=++.|++.|+|+|=..= .|. ..+.++.++.++++++.++++|++-+.+|+ |.....
T Consensus 18 ~~l~~f~~~~kmN~YiYAPKdDpyhr~~Wr-------e~Yp~~el~~l~~L~~~a~~~~V~Fv~ais----Pg~~~~--- 83 (306)
T PF07555_consen 18 LDLIRFLGRYKMNTYIYAPKDDPYHRSKWR-------EPYPEEELAELKELADAAKANGVDFVYAIS----PGLDIC--- 83 (306)
T ss_dssp HHHHHHHHHTT--EEEE--TT-TTTTTTTT-------S---HHHHHHHHHHHHHHHHTT-EEEEEEB----GTTT-----
T ss_pred HHHHHHHHHcCCceEEECCCCChHHHhhhc-------ccCCHHHHHHHHHHHHHHHHcCCEEEEEEC----cccccc---
Confidence 4557888999999997652 222 234566789999999999999999999996 432211
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCCcceEEe
Q 015517 180 GLLSKRVVKDFADYADFCFKTFGDRVKNWMT 210 (405)
Q Consensus 180 gw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t 210 (405)
+. .-+++....+++-+-+.--|+...+
T Consensus 84 -~s---~~~d~~~L~~K~~ql~~lGvr~Fai 110 (306)
T PF07555_consen 84 -YS---SEEDFEALKAKFDQLYDLGVRSFAI 110 (306)
T ss_dssp -TS---HHHHHHHHHHHHHHHHCTT--EEEE
T ss_pred -cC---cHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 11 3455666666655555444654443
No 223
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=20.60 E-value=3e+02 Score=29.19 Aligned_cols=60 Identities=7% Similarity=-0.000 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCCEEEecc-ccc-ccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCc
Q 015517 108 KEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 171 (405)
Q Consensus 108 ~eDi~l~~~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P 171 (405)
++-+++|+++|++.+-+++ +=+ ++...-....+. +-..+.|+.++++||.+.+.+. +++|
T Consensus 287 ~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~---~~~~~ai~~l~~~Gi~~~~~~I-~G~P 348 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTT---STNKEAIRLLRQHNILSEAQFI-TGFE 348 (497)
T ss_pred HHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCH---HHHHHHHHHHHHCCCcEEEEEE-EECC
Confidence 5567999999999888877 222 222211122333 4467899999999999887654 3455
No 224
>PF15234 LAT: Linker for activation of T-cells
Probab=20.56 E-value=1e+02 Score=28.63 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccC
Q 015517 4 PLAVAASFYFSLLLGTVTIRCAAG 27 (405)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~ 27 (405)
.|.+++..++++||++|+++|.--
T Consensus 10 ~LgLLlLplla~LlmALCvrCReL 33 (230)
T PF15234_consen 10 VLGLLLLPLLAVLLMALCVRCREL 33 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 457788888999999999999753
No 225
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.40 E-value=3.9e+02 Score=25.28 Aligned_cols=52 Identities=8% Similarity=0.011 Sum_probs=34.9
Q ss_pred chHHHHHHHHhCCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCEEEE
Q 015517 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYA 163 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~Wsri~P~~~g~~n~~~l~~y~~~id~l~~~gI~p~v 163 (405)
-+++.+++++++|++.+=+.......++. .... ..-+++-+.+.++||++..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~---~~~~---~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAP---DLKA---GGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCcccccc---ccCc---hHHHHHHHHHHHcCCeEEE
Confidence 37999999999999999884332222211 1222 2346777888899998754
No 226
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=20.35 E-value=65 Score=25.49 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcccccccCCC-CCCCCCCCCCcCCC
Q 015517 7 VAASFYFSLLLGTVTIRCAAGTSYFDEAAQPE-TVHFDTGGLSRESL 52 (405)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f 52 (405)
.+.+.+|++.|+.+.++|+- .-.+....-|. ++....+++.+.+|
T Consensus 31 faFV~~L~~fL~~liVRCfr-IllDPYssmPtStW~d~~eglekGqF 76 (81)
T PF11057_consen 31 FAFVGLLCLFLGLLIVRCFR-ILLDPYSSMPTSTWTDHKEGLEKGQF 76 (81)
T ss_pred ehHHHHHHHHHHHHHHHHHH-HHcChhhcCCcchhhhhhhhhhcccc
Confidence 35556677777777777764 12233333333 23333444555544
No 227
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.22 E-value=3.8e+02 Score=26.74 Aligned_cols=62 Identities=18% Similarity=0.364 Sum_probs=44.7
Q ss_pred chHHHHHHHHhCCCCEEEecc----cccc---cccCCC------CCCChhHHHHHHHHHHHHHHCCCEEEEEcCCCCCcH
Q 015517 106 RYKEDVDIMANLNFDAYRFSI----SWSR---IFPYGT------GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPE 172 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi----~Wsr---i~P~~~------g~~n~~~l~~y~~~id~l~~~gI~p~vtL~H~d~P~ 172 (405)
..++=|+.|+..++|.+-+-+ +|+- -.|+-. |.+-. +=++++++-++++||++|.-+ |+|.
T Consensus 19 ~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~---~di~elv~yA~~rgI~vIPEI---d~PG 92 (311)
T cd06570 19 VIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQ---EQIREVVAYARDRGIRVVPEI---DVPG 92 (311)
T ss_pred HHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCH---HHHHHHHHHHHHcCCEEEEee---cCcc
Confidence 367778999999999887766 5542 233321 23444 347999999999999999887 6775
Q ss_pred H
Q 015517 173 A 173 (405)
Q Consensus 173 ~ 173 (405)
.
T Consensus 93 H 93 (311)
T cd06570 93 H 93 (311)
T ss_pred c
Confidence 4
No 228
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.04 E-value=3.3e+02 Score=27.54 Aligned_cols=63 Identities=21% Similarity=0.459 Sum_probs=42.9
Q ss_pred chHHHHHHHHhCCCCEEEeccc-----------ccccccCC--------------------CCCCChhHHHHHHHHHHHH
Q 015517 106 RYKEDVDIMANLNFDAYRFSIS-----------WSRIFPYG--------------------TGKVNWKGVAYYNQLINYL 154 (405)
Q Consensus 106 ~y~eDi~l~~~lG~~~~Rfsi~-----------Wsri~P~~--------------------~g~~n~~~l~~y~~~id~l 154 (405)
..++-|+.|+..++|.+.+-++ ++.+-..| .|.+- -+=++++++.+
T Consensus 19 ~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 95 (357)
T cd06563 19 EVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREIVAYA 95 (357)
T ss_pred HHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHHHHHH
Confidence 3677789999999998876652 22321111 02222 34579999999
Q ss_pred HHCCCEEEEEcCCCCCcHHH
Q 015517 155 LKRGITPYANLYHYDLPEAL 174 (405)
Q Consensus 155 ~~~gI~p~vtL~H~d~P~~l 174 (405)
+++||++|.-+ |+|...
T Consensus 96 ~~rgI~VIPEI---D~PGH~ 112 (357)
T cd06563 96 AERGITVIPEI---DMPGHA 112 (357)
T ss_pred HHcCCEEEEec---CCchhH
Confidence 99999999876 677544
Done!