Query 015521
Match_columns 405
No_of_seqs 261 out of 1195
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:05:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 5E-112 1E-116 851.8 35.9 404 1-405 1-408 (408)
2 KOG2288 Galactosyltransferases 100.0 1.1E-75 2.3E-80 551.6 18.3 265 133-405 8-273 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 2.6E-50 5.6E-55 425.9 25.8 242 133-400 382-631 (636)
4 KOG2287 Galactosyltransferases 100.0 8.6E-49 1.9E-53 394.3 18.3 240 135-395 94-339 (349)
5 PF01762 Galactosyl_T: Galacto 100.0 3.7E-47 8E-52 352.1 17.5 191 150-348 1-195 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 6.8E-32 1.5E-36 268.8 19.3 242 130-398 74-360 (382)
7 PF13334 DUF4094: Domain of un 99.9 7E-28 1.5E-32 199.5 7.8 93 16-110 1-94 (95)
8 PF02434 Fringe: Fringe-like; 99.8 2.1E-18 4.6E-23 166.8 11.5 193 136-355 6-210 (252)
9 KOG2246 Galactosyltransferases 99.6 6.4E-15 1.4E-19 149.3 12.8 170 132-348 87-269 (364)
10 PLN03153 hypothetical protein; 99.0 4.2E-09 9.1E-14 109.8 15.1 188 134-354 120-319 (537)
11 KOG3708 Uncharacterized conser 97.3 0.0011 2.4E-08 69.3 9.5 198 136-393 26-243 (681)
12 PF01755 Glyco_transf_25: Glyc 95.4 0.42 9.1E-06 43.9 13.3 93 140-249 4-101 (200)
13 PF13641 Glyco_tranf_2_3: Glyc 95.1 0.57 1.2E-05 43.1 13.5 114 224-343 77-198 (228)
14 TIGR03472 HpnI hopanoid biosyn 94.9 0.76 1.7E-05 46.8 14.9 161 174-343 70-241 (373)
15 cd04192 GT_2_like_e Subfamily 94.0 1.3 2.9E-05 40.2 13.1 167 175-348 29-204 (229)
16 cd02525 Succinoglycan_BP_ExoA 93.8 3 6.5E-05 38.4 15.1 160 173-344 30-197 (249)
17 cd02520 Glucosylceramide_synth 93.3 5.7 0.00012 35.9 15.8 134 174-343 30-165 (196)
18 cd02510 pp-GalNAc-T pp-GalNAc- 92.7 4.7 0.0001 39.3 15.3 128 224-351 74-223 (299)
19 cd04196 GT_2_like_d Subfamily 92.4 7.1 0.00015 35.0 15.1 179 152-347 10-197 (214)
20 PF13506 Glyco_transf_21: Glyc 92.4 0.23 5E-06 45.5 5.2 119 218-345 16-144 (175)
21 TIGR03469 HonB hopene-associat 91.9 4.5 9.8E-05 41.3 14.5 160 174-341 70-248 (384)
22 PRK11204 N-glycosyltransferase 91.8 8.1 0.00018 39.6 16.3 191 136-349 54-256 (420)
23 PF00535 Glycos_transf_2: Glyc 91.5 3 6.6E-05 35.2 10.9 136 173-316 26-168 (169)
24 cd06421 CESA_CelA_like CESA_Ce 90.7 2 4.4E-05 39.3 9.7 121 225-351 76-209 (234)
25 cd06433 GT_2_WfgS_like WfgS an 88.5 16 0.00035 31.9 15.1 114 223-343 65-182 (202)
26 cd06423 CESA_like CESA_like is 87.9 8.6 0.00019 32.2 11.0 152 153-317 10-170 (180)
27 cd06439 CESA_like_1 CESA_like_ 87.8 16 0.00035 34.0 13.6 120 224-349 100-225 (251)
28 cd04187 DPM1_like_bac Bacteria 87.4 4.8 0.0001 35.6 9.4 136 173-319 28-165 (181)
29 cd04195 GT2_AmsE_like GT2_AmsE 86.8 12 0.00026 33.4 11.7 114 224-348 71-196 (201)
30 cd04186 GT_2_like_c Subfamily 86.7 18 0.0004 30.6 14.4 87 228-346 69-158 (166)
31 cd06532 Glyco_transf_25 Glycos 86.5 10 0.00022 32.6 10.6 117 140-322 2-119 (128)
32 cd04184 GT2_RfbC_Mx_like Myxoc 85.1 27 0.00058 31.0 15.9 111 224-343 74-189 (202)
33 PRK14583 hmsR N-glycosyltransf 84.8 54 0.0012 34.2 17.5 190 136-347 75-275 (444)
34 PF13632 Glyco_trans_2_3: Glyc 84.7 2.8 6.2E-05 37.6 6.6 117 236-356 1-127 (193)
35 cd06434 GT2_HAS Hyaluronan syn 83.9 6.2 0.00013 36.2 8.6 157 174-343 28-201 (235)
36 cd04185 GT_2_like_b Subfamily 82.2 37 0.0008 30.4 13.7 101 222-352 69-172 (202)
37 cd02526 GT2_RfbF_like RfbF is 81.4 30 0.00064 31.7 12.2 128 223-352 66-203 (237)
38 cd06435 CESA_NdvC_like NdvC_li 80.6 45 0.00098 30.6 13.1 118 224-347 73-203 (236)
39 cd06420 GT2_Chondriotin_Pol_N 80.0 11 0.00023 33.0 8.3 97 224-341 70-166 (182)
40 PF04646 DUF604: Protein of un 79.0 3.2 7E-05 40.6 4.8 52 302-353 12-67 (255)
41 cd06437 CESA_CaSu_A2 Cellulose 75.5 67 0.0014 29.5 14.1 121 224-350 78-210 (232)
42 cd02514 GT13_GLCNAC-TI GT13_GL 73.8 15 0.00032 37.5 8.2 90 215-316 79-174 (334)
43 PF10111 Glyco_tranf_2_2: Glyc 73.4 93 0.002 30.2 15.2 165 172-344 32-211 (281)
44 PRK10714 undecaprenyl phosphat 72.2 67 0.0015 32.2 12.6 135 173-318 37-174 (325)
45 COG1216 Predicted glycosyltran 69.1 34 0.00074 33.6 9.5 137 202-341 55-206 (305)
46 COG1215 Glycosyltransferases, 68.7 98 0.0021 31.4 13.1 164 175-348 85-260 (439)
47 cd02522 GT_2_like_a GT_2_like_ 68.5 40 0.00086 30.4 9.3 107 225-343 64-175 (221)
48 cd04191 Glucan_BSP_ModH Glucan 67.0 1E+02 0.0022 29.8 12.2 123 216-346 77-224 (254)
49 TIGR01556 rhamnosyltran L-rham 65.2 1.3E+02 0.0028 28.7 13.4 126 224-352 65-200 (281)
50 cd04179 DPM_DPG-synthase_like 64.9 62 0.0013 28.1 9.5 136 174-317 28-167 (185)
51 TIGR03030 CelA cellulose synth 58.5 1.4E+02 0.0031 33.4 12.9 136 216-355 212-360 (713)
52 cd06442 DPM1_like DPM1_like re 56.6 1.5E+02 0.0033 26.6 13.6 91 225-317 70-167 (224)
53 PF03071 GNT-I: GNT-I family; 56.5 1.4E+02 0.0031 31.6 11.6 86 223-319 177-272 (434)
54 cd04190 Chitin_synth_C C-termi 56.1 17 0.00037 34.4 4.5 114 231-344 71-211 (244)
55 cd04188 DPG_synthase DPG_synth 48.6 1.7E+02 0.0038 26.3 9.9 89 173-269 29-119 (211)
56 TIGR03111 glyc2_xrt_Gpos1 puta 48.0 3.2E+02 0.007 28.4 12.9 127 223-352 121-266 (439)
57 cd00761 Glyco_tranf_GTA_type G 47.9 1.4E+02 0.0031 23.8 13.8 82 224-340 68-150 (156)
58 PLN02726 dolichyl-phosphate be 47.1 2.4E+02 0.0052 26.2 18.0 155 174-345 40-210 (243)
59 COG4092 Predicted glycosyltran 42.6 96 0.0021 31.0 7.2 81 171-256 35-117 (346)
60 cd06427 CESA_like_2 CESA_like_ 41.8 2.9E+02 0.0062 25.6 12.8 121 224-347 75-206 (241)
61 PRK05454 glucosyltransferase M 41.6 3.3E+02 0.0071 30.7 12.2 199 133-347 121-350 (691)
62 PF03452 Anp1: Anp1; InterPro 40.9 3.7E+02 0.008 26.7 11.2 108 155-267 40-179 (269)
63 PF04508 Pox_A_type_inc: Viral 39.6 37 0.00081 21.1 2.5 19 91-109 3-21 (23)
64 cd06438 EpsO_like EpsO protein 39.2 2.7E+02 0.0058 24.5 9.9 89 223-315 70-169 (183)
65 PHA01631 hypothetical protein 38.2 72 0.0016 29.5 5.3 92 202-319 39-133 (176)
66 cd06913 beta3GnTL1_like Beta 1 38.2 3E+02 0.0066 24.8 10.8 45 224-268 75-119 (219)
67 PRK10018 putative glycosyl tra 28.6 5.6E+02 0.012 25.0 12.4 35 224-258 76-110 (279)
68 KOG2547 Ceramide glucosyltrans 27.0 92 0.002 32.5 4.5 28 232-259 169-196 (431)
69 PF09258 Glyco_transf_64: Glyc 22.7 89 0.0019 30.3 3.4 101 231-338 73-180 (247)
70 PLN03182 xyloglucan 6-xylosylt 22.6 4.4E+02 0.0096 27.9 8.5 93 153-246 106-210 (429)
71 PF04666 Glyco_transf_54: N-Ac 21.6 5.8E+02 0.012 25.6 9.0 120 133-255 49-191 (297)
72 PF03742 PetN: PetN ; InterPr 21.5 1.2E+02 0.0026 19.9 2.7 23 15-37 4-26 (29)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=4.6e-112 Score=851.79 Aligned_cols=404 Identities=90% Similarity=1.440 Sum_probs=374.9
Q ss_pred CCccccc-ccCCCCccchHHHHHHHHHHHHHHHHHhccCCCCCcCccccccchhhhhhhhhccCCCCccc---cccccCC
Q 015521 1 MSLKSKG-ELTSRSVVSQKWTFLLCLGCFCAGMLFTNRMWAVPESKGFTRTTAMEAEKLKLVSEGCNPRL---QKVVRHD 76 (405)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 76 (405)
||.|+|| ++.+|+.||+||+++||++|||+|++|++|||..||..+..++++..++++++++++|+.++ +. .+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~~~ 79 (408)
T PLN03193 1 MSTKSRGEEYSSRSVVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKGISRTTVTEAERLKLVSEGCDPKTLYQKE-VKRD 79 (408)
T ss_pred CCcccccccccccccccHHHHHHHHHHHHHHHHhhccccccCCccccccccccchhhhhhhhccccccccccccc-cccc
Confidence 8999999 77899999999999999999999999999999999999888878888999999999999765 22 2468
Q ss_pred cchhhhhhhhhHHHHHhhhhhHHHHHHHHHHHHhhhccccCCCCCcccccccCCCCCCCeeEEEEEECCCCCHHHHHHHH
Q 015521 77 SKDIFGEVFKTHNAIQTLDKTISNLEMELAAARAAQESILSGSPLSEDLKKTESSGKRRYLMVVGINTAFSSRKRRDSVR 156 (405)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llI~V~Sa~~~~~rR~aIR 156 (405)
++|||+||++||+|||+|+|+|+.||||||+|++.+..+.++.|.++.....+...+++++|||+|+|+|+|++||++||
T Consensus 80 ~~~~~~~~~~t~~~~~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR 159 (408)
T PLN03193 80 SKDIIGEVSKTHNAIQTLDKTISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVR 159 (408)
T ss_pred hhHHHHHHhhHHHHHHHHhhhhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999997766666666543222223455778999999999999999999999
Q ss_pred HHHHhhhhhhhhcccCCcEEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCccccchhHHHHHHHHHHHhccCcce
Q 015521 157 ATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADF 236 (405)
Q Consensus 157 eTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f 236 (405)
+|||+.++.+.+++...+|+++||||++.++++.++++|++|+++|||||++||+|+|.|||.||+++|+||.++++++|
T Consensus 160 ~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF 239 (408)
T PLN03193 160 ATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADF 239 (408)
T ss_pred HHHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeE
Confidence 99999887777777789999999999998767789999999999999999999999999999999999999999999999
Q ss_pred EEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEeccCccccCCCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHH
Q 015521 237 YVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYI 316 (405)
Q Consensus 237 vlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~fgd~~~~Yp~y~~G~gYvLS~dla~~I 316 (405)
|+|+|||+|||+++|+.+|+.++.++++|+|||+++|++.+++.|||+|++|+||++++.|||||+|++||||+|+|++|
T Consensus 240 ~mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I 319 (408)
T PLN03193 240 YVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYI 319 (408)
T ss_pred EEEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHH
Confidence 99999999999999999999887778999999998988877889999999999998899999999999999999999999
Q ss_pred HHhccccCCCCcchHHHHHHHhhCCCeeecCCCcccCCCCCcccccccCCccccccccccccccCcHHHHHHHHHHccCC
Q 015521 317 SINQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWTCSGICRSADRIKEVHRRCGEG 396 (405)
Q Consensus 317 ~~~~~~l~~~~~EDV~vG~~l~~L~v~~~~~~~f~~~~~~~cewk~~~~~~c~~~~~~~~sgic~~~~~m~~vH~~~~e~ 396 (405)
+.+...++.|++||||+|+||++|+|+|+||++|||+++|+|+||+++|++|+++|||+|||||+|++||+++|++|+|+
T Consensus 320 ~~n~~~L~~y~~EDV~vG~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~~~c~~~~~~~csg~c~~~~~~~~~h~~c~~~ 399 (408)
T PLN03193 320 SINQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCGEG 399 (408)
T ss_pred HhChhhhcccCcchhhhhhHhccCCceeeecccccCCCCccccccccCCCeeEEEecccCcccCCHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCC
Q 015521 397 ENALWSATF 405 (405)
Q Consensus 397 ~~~~w~~~~ 405 (405)
++|+|+++|
T Consensus 400 ~~~~~~~~~ 408 (408)
T PLN03193 400 ENALWSATF 408 (408)
T ss_pred cccceeecC
Confidence 999999987
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-75 Score=551.57 Aligned_cols=265 Identities=68% Similarity=1.150 Sum_probs=256.8
Q ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCChhHHHHHHHHhhcCCeEecc-CC
Q 015521 133 KRRYLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLD-HV 211 (405)
Q Consensus 133 ~~~~~llI~V~Sa~~~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld-~~ 211 (405)
+++++++|+|.|++++.+||+++|+||++.++.+++++.+++|.++||||+ .+.+++++++|++|+++|+|+|.+| ++
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~-~~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGT-ATLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEecc-CCccHHHHHHHHHHHHhcCCeEeechhH
Confidence 778999999999999999999999999999999999999999999999999 4457899999999999999999999 99
Q ss_pred ccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEeccCccccCCCCccccCcccccC
Q 015521 212 EGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFG 291 (405)
Q Consensus 212 DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~fg 291 (405)
|+|++||.||+++|.+|..+|+++||+|+|||+|||++.|...|+.++.+|++|||||++|||+.+++.|||||+ |+||
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCeeecCCCcccCCCCCcccccccCCccccc
Q 015521 292 EAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVAS 371 (405)
Q Consensus 292 d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~~~~~~~f~~~~~~~cewk~~~~~~c~~~ 371 (405)
+.|+ |+||+.|++|+||++|+.+|++|+..++.|.+|||++|.||+||+|+|+||+++||+++ |++++++|.++
T Consensus 166 ~~g~-YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~-----~~~~~~~~~~~ 239 (274)
T KOG2288|consen 166 DNGN-YFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTP-----KALAGMVCAAS 239 (274)
T ss_pred cccc-cchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccch-----hhhccceeeee
Confidence 9777 99999999999999999999999999999999999999999999999999999999874 78899999999
Q ss_pred cccccccccCcHHHHHHHHHHccCCcccccccCC
Q 015521 372 FDWTCSGICRSADRIKEVHRRCGEGENALWSATF 405 (405)
Q Consensus 372 ~~~~~sgic~~~~~m~~vH~~~~e~~~~~w~~~~ 405 (405)
++|+|+|+|+++.||.++|.+|+++..++|.+.|
T Consensus 240 ~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~~~ 273 (274)
T KOG2288|consen 240 FDWKCSGLCKSEDRMLEVHKYDWEGKPATCCSRF 273 (274)
T ss_pred ecccccccCchHHHHhHHHHhhccCCCcccCccc
Confidence 9999999999999999999999999999998865
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=2.6e-50 Score=425.86 Aligned_cols=242 Identities=22% Similarity=0.350 Sum_probs=207.9
Q ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCc
Q 015521 133 KRRYLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVE 212 (405)
Q Consensus 133 ~~~~~llI~V~Sa~~~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~D 212 (405)
+++++|||+|+|+|+|++||+|||+|||+... ..+.+++++|++|.+. ++.++.+|++|+++|||||++||+|
T Consensus 382 ~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~--n~~l~~~L~~Ea~~ygDIIq~dF~D 454 (636)
T PLN03133 382 KKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHK--NQMVNEELWNEARTYGDIQLMPFVD 454 (636)
T ss_pred CCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCC--cHHHHHHHHHHHHHcCCeEEEeeec
Confidence 56799999999999999999999999998642 2345699999999986 3578899999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEec-cCccccCCCCccccCcccccC
Q 015521 213 GYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMK-SGPVLNQKGVRYHEPEYWKFG 291 (405)
Q Consensus 213 sY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~-~gpv~r~~~~Kwy~pe~~~fg 291 (405)
+|+|||+||++++.|+..|++++|+||+|||+|||+++|+++|......+++|+|++. ...|+|++.+|||+|...|
T Consensus 455 sY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~ey-- 532 (636)
T PLN03133 455 YYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEW-- 532 (636)
T ss_pred hhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHC--
Confidence 9999999999999999999999999999999999999999999877666789999986 4578899999999987666
Q ss_pred CCCCCCCCCCCCCceeeCHHHHHHHHHhc--cccCCCCcchHHHHHHHh-----hCCCeeecCCCcccCCCCCccccccc
Q 015521 292 EAGNRYFRHATGQLYAISKDLAAYISINQ--HVLHKYANEDVSLGSWFI-----GLDVEHIDDRRLCCGTPPDCEWKAQA 364 (405)
Q Consensus 292 d~~~~Yp~y~~G~gYvLS~dla~~I~~~~--~~l~~~~~EDV~vG~~l~-----~L~v~~~~~~~f~~~~~~~cewk~~~ 364 (405)
|.+.|||||+|+|||||+|+|++|+.+. ..++.|++||||+|+|++ ++.+++.++.+||+. .|. .
T Consensus 533 -p~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~---~C~----~ 604 (636)
T PLN03133 533 -PEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNE---GCK----D 604 (636)
T ss_pred -CCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCC---cCC----C
Confidence 6789999999999999999999998864 578999999999999985 667888899999753 243 1
Q ss_pred CCccccccccccccccCcHHHHHHHHHHccCCcccc
Q 015521 365 GNICVASFDWTCSGICRSADRIKEVHRRCGEGENAL 400 (405)
Q Consensus 365 ~~~c~~~~~~~~sgic~~~~~m~~vH~~~~e~~~~~ 400 (405)
+.++++ -.+|+.|..+|+...+..++.
T Consensus 605 ~~i~~H---------~~sP~eM~~lW~~l~~~~~~~ 631 (636)
T PLN03133 605 GYVVAH---------YQSPREMLCLWQKLQEGKRAT 631 (636)
T ss_pred CeEEEe---------cCCHHHHHHHHHHHhccCCCC
Confidence 122221 246899999999987776544
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.6e-49 Score=394.34 Aligned_cols=240 Identities=22% Similarity=0.308 Sum_probs=208.1
Q ss_pred CeeEEEEEECCCCCHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCccc
Q 015521 135 RYLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGY 214 (405)
Q Consensus 135 ~~~llI~V~Sa~~~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY 214 (405)
.++++|+|+|++++++||++||+|||+... ..+..++++|++|.+++.+ .++..|.+|++.|||||+.||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccch
Confidence 489999999999999999999999999863 3577899999999998644 6689999999999999999999999
Q ss_pred cchhHHHHHHHHHHHh-ccCcceEEEeCCceEeeHHHHHHHHHhc-CCCCCeEEEEec-cCccccCCCCccccCcccccC
Q 015521 215 LELSAKTKIYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRH-RSKPRVYIGCMK-SGPVLNQKGVRYHEPEYWKFG 291 (405)
Q Consensus 215 ~nLt~Kt~~~~~wa~~-~~~a~fvlKvDDDvfVn~~~L~~~L~~~-~~~~~lYiG~~~-~gpv~r~~~~Kwy~pe~~~fg 291 (405)
.|||+|+++++.|+.. |++++|++|+|||+|||+++|+.+|..+ .+.+++|.|.+. ..+|+|++.+|||+|+..|
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y-- 245 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESEY-- 245 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHHC--
Confidence 9999999999999997 8999999999999999999999999999 778899999976 4689999999999998777
Q ss_pred CCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhC-CCeeecCCCcccCC--CCCcccccccCCcc
Q 015521 292 EAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGL-DVEHIDDRRLCCGT--PPDCEWKAQAGNIC 368 (405)
Q Consensus 292 d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L-~v~~~~~~~f~~~~--~~~cewk~~~~~~c 368 (405)
|...||+||+|+|||||+++|+.|+.++..++.+++|||++|+|++.. +++++++..|.... -..|.|+. .-
T Consensus 246 -~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~~~~~~~~~~~----~~ 320 (349)
T KOG2287|consen 246 -PCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIPLSFDPCCYRD----LL 320 (349)
T ss_pred -CCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCcccccccccCCCCcccc----eE
Confidence 778999999999999999999999999999999999999999999877 99999888755432 13454431 11
Q ss_pred ccccccccccccCcHHHHHHHHHHccC
Q 015521 369 VASFDWTCSGICRSADRIKEVHRRCGE 395 (405)
Q Consensus 369 ~~~~~~~~sgic~~~~~m~~vH~~~~e 395 (405)
+ .. - .+++.|..+++.+..
T Consensus 321 ~------~H-~-~~p~e~~~~w~~~~~ 339 (349)
T KOG2287|consen 321 A------VH-R-LSPNEMIYLWKKLKD 339 (349)
T ss_pred E------Ee-c-CCHHHHHHHHHHhhc
Confidence 1 11 1 227788888888765
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=3.7e-47 Score=352.15 Aligned_cols=191 Identities=29% Similarity=0.383 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCccccchhHHHHHHHHHHH
Q 015521 150 KRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAV 229 (405)
Q Consensus 150 ~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~ 229 (405)
+||++||+||++... ....+++++||+|.+++.+..++.+|.+|+++|+|||++||.|+|.|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 589999999999853 235899999999999865667888999999999999999999999999999999999999
Q ss_pred h-ccCcceEEEeCCceEeeHHHHHHHHHhc--CC-CCCeEEEEeccCccccCCCCccccCcccccCCCCCCCCCCCCCCc
Q 015521 230 S-LWDADFYVKVDDDVHVNIATLGQTLVRH--RS-KPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQL 305 (405)
Q Consensus 230 ~-~~~a~fvlKvDDDvfVn~~~L~~~L~~~--~~-~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~fgd~~~~Yp~y~~G~g 305 (405)
+ |++++|++|+|||+|||+++|.+.|... .. ...+|.+++..+++++++.+|||+|+..| +.+.|||||+|++
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y---~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEY---PDDYYPPYCSGGG 152 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeec---ccccCCCcCCCCe
Confidence 8 6679999999999999999999999987 23 33455555677889999999999998777 6789999999999
Q ss_pred eeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCeeecCC
Q 015521 306 YAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVEHIDDR 348 (405)
Q Consensus 306 YvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~~~~~~ 348 (405)
|+||+++|+.|+.++..++.+++|||++|+|+.+++|+++|++
T Consensus 153 yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 153 YVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999999999999999999999999999999999875
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=6.8e-32 Score=268.83 Aligned_cols=242 Identities=17% Similarity=0.192 Sum_probs=181.1
Q ss_pred CCCCCCeeEEEEEECCCCC--HHHHHHHHHHHHhhhhh-hhhcccCCcEEEEEEeecCCCCCChhHHHHHHHHhhcCCeE
Q 015521 130 SSGKRRYLMVVGINTAFSS--RKRRDSVRATWMLQGEK-RKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFM 206 (405)
Q Consensus 130 ~~~~~~~~llI~V~Sa~~~--~~rR~aIReTW~~~~~~-l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL 206 (405)
.+..++.++++||.|..++ +.||++.|+||.+.... .+...-...+.++|++|..++.+-..+.+|.+|+++|||||
T Consensus 74 ~w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIV 153 (382)
T PTZ00210 74 VWKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDII 153 (382)
T ss_pred HhccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEE
Confidence 3557789999999999987 89999999999998753 23333355678899999999877799999999999999999
Q ss_pred eccC------------------CccccchhHHHHHHHHHHHh-ccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEE
Q 015521 207 RLDH------------------VEGYLELSAKTKIYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIG 267 (405)
Q Consensus 207 ~ld~------------------~DsY~nLt~Kt~~~~~wa~~-~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG 267 (405)
++|| .|++.++|+||+++|+||.. |++++|++|+|||+|||++++++.|+.. ++..+|+|
T Consensus 154 ilpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G 232 (382)
T PTZ00210 154 TLPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMG 232 (382)
T ss_pred EEecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEE
Confidence 9999 77788899999999999998 7799999999999999999999999665 45569999
Q ss_pred EeccC-ccccCCCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccc--c---------------CCCCcc
Q 015521 268 CMKSG-PVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHV--L---------------HKYANE 329 (405)
Q Consensus 268 ~~~~g-pv~r~~~~Kwy~pe~~~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~--l---------------~~~~~E 329 (405)
.+... .+. .+.+||||+|+||+||+|+|+.|+...+. + -.+.+|
T Consensus 233 ~v~~~~~p~------------------Rd~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~E 294 (382)
T PTZ00210 233 RYNYYNRIW------------------RRNQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYE 294 (382)
T ss_pred eeCCCCccc------------------cCCCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCch
Confidence 86421 111 12479999999999999999999987543 2 236799
Q ss_pred hHHHHHHH-hhCCCeee--cCCCcccCCCCCcccccccCCcccccccc--ccccccCcHHHHHHHHHHccCCcc
Q 015521 330 DVSLGSWF-IGLDVEHI--DDRRLCCGTPPDCEWKAQAGNICVASFDW--TCSGICRSADRIKEVHRRCGEGEN 398 (405)
Q Consensus 330 DV~vG~~l-~~L~v~~~--~~~~f~~~~~~~cewk~~~~~~c~~~~~~--~~sgic~~~~~m~~vH~~~~e~~~ 398 (405)
|+.+|.|+ .++..+.. -+..+|++.. ..+..|.....+ -|..-|+ ++.=..+|.+.+....
T Consensus 295 DiMvG~vLr~~~k~~~l~~V~~~~c~Fhd-------~~~~~~~~~v~~~sVvvHhik-e~dYa~Lm~~F~n~~~ 360 (382)
T PTZ00210 295 DVMVGMILREKVVYRNLISVEMGRCHFHN-------AGKFGVRKSVRNMSVVIHHIQ-EADYEMLMDYFPEGVI 360 (382)
T ss_pred HHHHHHHHHHhcCcCceeeecccccccee-------cCCCCCccccccceEEEEecC-HHHHHHHHHHhcCCCC
Confidence 99999999 55553321 2344555421 111122211111 1222334 3466677888777543
No 7
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.95 E-value=7e-28 Score=199.47 Aligned_cols=93 Identities=65% Similarity=1.054 Sum_probs=84.2
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCCCcCccccccc-hhhhhhhhhccCCCCccccccccCCcchhhhhhhhhHHHHHhh
Q 015521 16 SQKWTFLLCLGCFCAGMLFTNRMWAVPESKGFTRTT-AMEAEKLKLVSEGCNPRLQKVVRHDSKDIFGEVFKTHNAIQTL 94 (405)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (405)
|+||+++||++|||+|+||+||||..||..+....+ +...+++++++++|++++. ++.+++++|++|+|||+|||+|
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~~~~~~~~~~~~~l~l~s~~c~~k~~--~~~~~~di~~eV~kTh~aIq~L 78 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKEISRRSSQDAEERLQLVSEDCDPKKL--KESDQRDIMGEVSKTHEAIQSL 78 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCccccchhhhcccccccccccccccccccc--ccCCccchhHHHHHHHHHHHHH
Confidence 679999999999999999999999999988877544 3678999999999998762 3578999999999999999999
Q ss_pred hhhHHHHHHHHHHHHh
Q 015521 95 DKTISNLEMELAAARA 110 (405)
Q Consensus 95 ~~~~~~le~~l~~~~~ 110 (405)
||+||+||||||+||+
T Consensus 79 dKtIS~LEMELAaARa 94 (95)
T PF13334_consen 79 DKTISSLEMELAAARA 94 (95)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999996
No 8
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.76 E-value=2.1e-18 Score=166.84 Aligned_cols=193 Identities=18% Similarity=0.216 Sum_probs=99.6
Q ss_pred eeEEEEEECCCCCH-HHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCccc
Q 015521 136 YLMVVGINTAFSSR-KRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGY 214 (405)
Q Consensus 136 ~~llI~V~Sa~~~~-~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY 214 (405)
-.++|+|+|++++. .|-.+|++||++.+.. + .|+.... .+..|..+ ...+++.-+...++
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~---------~--~~ifsd~------~d~~l~~~--~~~~l~~~~~~~~~ 66 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCNK---------Q--TFIFSDA------EDPSLPTV--TGVHLVNPNCDAGH 66 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSGG---------G--EEEEESS--------HHHHHH--HGGGEEE-------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcCC---------c--eEEecCc------cccccccc--cccccccCCCcchh
Confidence 36889999999754 5669999999998631 1 2432221 12334333 23345555555555
Q ss_pred cchhHHHHHHHHHHHh-ccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEecc-CccccCCCCccccCcccccCC
Q 015521 215 LELSAKTKIYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKS-GPVLNQKGVRYHEPEYWKFGE 292 (405)
Q Consensus 215 ~nLt~Kt~~~~~wa~~-~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~-gpv~r~~~~Kwy~pe~~~fgd 292 (405)
...+++.++.+.+... ..+++|++++|||+||++++|.++|....+..++|+|+... ++...-.......+
T Consensus 67 ~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~------- 139 (252)
T PF02434_consen 67 CRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKS------- 139 (252)
T ss_dssp ------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-----------------------
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeecccccccc-------
Confidence 4444444444444322 36889999999999999999999999999988999998642 22210000000000
Q ss_pred CCCCCCCCC-CCCceeeCHHHHHHHHHh---ccccCCC----CcchHHHHHHHhh-CCCeeecCCCcccCCC
Q 015521 293 AGNRYFRHA-TGQLYAISKDLAAYISIN---QHVLHKY----ANEDVSLGSWFIG-LDVEHIDDRRLCCGTP 355 (405)
Q Consensus 293 ~~~~Yp~y~-~G~gYvLS~dla~~I~~~---~~~l~~~----~~EDV~vG~~l~~-L~v~~~~~~~f~~~~~ 355 (405)
...-..|+ +|+||+||+.+++.|... ....... ..||+.+|.|+.. |+|+.+|.+.|+...+
T Consensus 140 -~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~ 210 (252)
T PF02434_consen 140 -KDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLE 210 (252)
T ss_dssp -------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS
T ss_pred -CcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCc
Confidence 11222455 579999999999999542 2222222 3899999999988 9999999999987543
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.60 E-value=6.4e-15 Score=149.28 Aligned_cols=170 Identities=24% Similarity=0.321 Sum_probs=130.2
Q ss_pred CCCCeeEEEEEECCCCCHHHH-HHHHHHHHhhhhhhhhcccCCcEEEEEEe---ecCCCCCChhHHHHHHHHhhcCCeEe
Q 015521 132 GKRRYLMVVGINTAFSSRKRR-DSVRATWMLQGEKRKRLEEEKGIIMRFVI---GHSATSGGILDRAIEAEDRKHGDFMR 207 (405)
Q Consensus 132 ~~~~~~llI~V~Sa~~~~~rR-~aIReTW~~~~~~l~~l~~~~~v~v~Fvi---G~s~~~~~~~~~~L~~E~~~~~DIL~ 207 (405)
..++..+++.|+|.+.+...| +++-+||++.++. ..|+- .... ..+ ..|.
T Consensus 87 l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~-----------~~f~s~~~s~~~--------------~~f-~~v~ 140 (364)
T KOG2246|consen 87 LSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK-----------GIFFSPTLSKDD--------------SRF-PTVY 140 (364)
T ss_pred cCCCceEEEEEEecCcCceeehhhhhcccccccCc-----------ceecCccCCCCC--------------CcC-ceee
Confidence 466789999999998766654 7999999998742 23443 2221 112 2336
Q ss_pred ccCCccccchhHHHHHHHHHHHh--ccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEeccCccccCCCCccccC
Q 015521 208 LDHVEGYLELSAKTKIYFATAVS--LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEP 285 (405)
Q Consensus 208 ld~~DsY~nLt~Kt~~~~~wa~~--~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~p 285 (405)
.+..|+|+++..||..+|+++.. ..+++|++|+|||||+.+++|..+|..+++...+|+|+... -|.
T Consensus 141 ~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~----------~~~- 209 (364)
T KOG2246|consen 141 YNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSK----------SYF- 209 (364)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccc----------ccc-
Confidence 88999999999999999999985 35999999999999999999999999999999999998531 111
Q ss_pred cccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhc----c-ccCCCC--cchHHHHHHHhhCCCeeecCC
Q 015521 286 EYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQ----H-VLHKYA--NEDVSLGSWFIGLDVEHIDDR 348 (405)
Q Consensus 286 e~~~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~----~-~l~~~~--~EDV~vG~~l~~L~v~~~~~~ 348 (405)
.+.| -.+|++|++|+.+.+.++... . ....+. .||+-+|.||+.+||...|.+
T Consensus 210 --------~~~y--~~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~~ 269 (364)
T KOG2246|consen 210 --------QNGY--SSGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDER 269 (364)
T ss_pred --------cccc--ccCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCch
Confidence 0121 146899999999988877632 2 334444 899999999999999988763
No 10
>PLN03153 hypothetical protein; Provisional
Probab=99.03 E-value=4.2e-09 Score=109.84 Aligned_cols=188 Identities=19% Similarity=0.152 Sum_probs=114.6
Q ss_pred CCeeEEEEEECCCCCH-HHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCC--CChhHHHHHHHHhhcCCeEeccC
Q 015521 134 RRYLMVVGINTAFSSR-KRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATS--GGILDRAIEAEDRKHGDFMRLDH 210 (405)
Q Consensus 134 ~~~~llI~V~Sa~~~~-~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~--~~~~~~~L~~E~~~~~DIL~ld~ 210 (405)
.--.++++|.+..+.. +|+..|+.+|.+.. -. -++|+.....+. +..+- .|. .-.|.=...+
T Consensus 120 ~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~--------~r--g~v~ld~~~~~~~~~~~~P-~i~----is~d~s~f~y 184 (537)
T PLN03153 120 SLNHIMFGIAGSSQLWKRRKELVRLWWRPNQ--------MR--GHVWLEEQVSPEEGDDSLP-PIM----VSEDTSRFRY 184 (537)
T ss_pred ccccEEEEEEEchhhhhhhhhhhhhhcCccc--------ce--eEEEecccCCCCCCcCCCC-CEE----eCCCcccccc
Confidence 3457889999887755 56699999999752 11 134443322110 00000 000 0000000000
Q ss_pred CccccchhHHHH--HHHHHHHh--ccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEeccCccccCCCCccccCc
Q 015521 211 VEGYLELSAKTK--IYFATAVS--LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPE 286 (405)
Q Consensus 211 ~DsY~nLt~Kt~--~~~~wa~~--~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~pe 286 (405)
+...+...... .+...+.. .++++||+++|||+|+.+++|+..|..++++...|+|..... ...
T Consensus 185 -~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~-----------~~q 252 (537)
T PLN03153 185 -TNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSES-----------HSA 252 (537)
T ss_pred -cCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccc-----------ccc
Confidence 11112222211 12333333 589999999999999999999999999999999999975310 000
Q ss_pred ccccCCCCCCCCCC-CCCCceeeCHHHHHHHHHhcc-ccCCC---CcchHHHHHHHhhCCCeeecCCCcccCC
Q 015521 287 YWKFGEAGNRYFRH-ATGQLYAISKDLAAYISINQH-VLHKY---ANEDVSLGSWFIGLDVEHIDDRRLCCGT 354 (405)
Q Consensus 287 ~~~fgd~~~~Yp~y-~~G~gYvLS~dla~~I~~~~~-~l~~~---~~EDV~vG~~l~~L~v~~~~~~~f~~~~ 354 (405)
..+| .| .| -+|+||+||+.+++.|..... ....| .-+|.-+|.|+..++|...+.++|....
T Consensus 253 n~~f-----~~-~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D 319 (537)
T PLN03153 253 NSYF-----SH-NMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWD 319 (537)
T ss_pred cccc-----cc-ccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCccccc
Confidence 0011 11 13 379999999999999987532 22222 4588889999999999999999998764
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.0011 Score=69.27 Aligned_cols=198 Identities=17% Similarity=0.218 Sum_probs=120.6
Q ss_pred eeEEEEEECCCCCHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCcccc
Q 015521 136 YLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYL 215 (405)
Q Consensus 136 ~~llI~V~Sa~~~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~ 215 (405)
-+|+++|+|. ..---+|-+|=+.... ++.|+++.+... .|.-++..+-.|.
T Consensus 26 Erl~~aVmte---~tlA~a~NrT~ahhvp-----------rv~~F~~~~~i~---------------~~~a~~~~vs~~d 76 (681)
T KOG3708|consen 26 ERLMAAVMTE---STLALAINRTLAHHVP-----------RVHLFADSSRID---------------NDLAQLTNVSPYD 76 (681)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHhhcc-----------eeEEeecccccc---------------ccHhhccccCccc
Confidence 4566777772 2455667777665532 566888776532 1222333333333
Q ss_pred chhHHHH-HHHHHHHhc--cCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEeccCccccCCCCccccCcccccCC
Q 015521 216 ELSAKTK-IYFATAVSL--WDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGE 292 (405)
Q Consensus 216 nLt~Kt~-~~~~wa~~~--~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~fgd 292 (405)
.-..|+. +.+.+..++ -++||++-+-|++|||...|++++....-+.++|+|.-. - +
T Consensus 77 ~r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~------------------~-~- 136 (681)
T KOG3708|consen 77 LRGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEA------------------E-D- 136 (681)
T ss_pred cCccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhh------------------h-C-
Confidence 3334443 345555553 489999999999999999999999988888899999311 0 0
Q ss_pred CCCCCCCCC-CCCceeeCHHHHHHHHHhccccCC---CCcchHHHHHHHh---hCCCeeecC--CCcccC--CCC----C
Q 015521 293 AGNRYFRHA-TGQLYAISKDLAAYISINQHVLHK---YANEDVSLGSWFI---GLDVEHIDD--RRLCCG--TPP----D 357 (405)
Q Consensus 293 ~~~~Yp~y~-~G~gYvLS~dla~~I~~~~~~l~~---~~~EDV~vG~~l~---~L~v~~~~~--~~f~~~--~~~----~ 357 (405)
|.. + | .|.||+||+.++..+-.|-.-... -.-.|+.+|.|+. +++.++.|. +.|... +|. .
T Consensus 137 -gs~--r-C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~hQGvrq~s~~~dspgr~~~~ 212 (681)
T KOG3708|consen 137 -GSG--R-CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPLHQGVRQYSEREDSPGRHDSI 212 (681)
T ss_pred -ccC--c-cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccchhhhHHhhhHhhcCCCccccc
Confidence 111 1 6 489999999999999887543322 2467899999994 566555443 233322 222 3
Q ss_pred cccccccCCccccccccccccc--cCcHHHHHHHHHHc
Q 015521 358 CEWKAQAGNICVASFDWTCSGI--CRSADRIKEVHRRC 393 (405)
Q Consensus 358 cewk~~~~~~c~~~~~~~~sgi--c~~~~~m~~vH~~~ 393 (405)
-||+... .|. +.+.+ ..+++.|-.+|.+.
T Consensus 213 ~e~~~s~------aFr-~A~tv~pv~~p~d~yrLH~yf 243 (681)
T KOG3708|consen 213 PEWEGSP------AFR-SALTVHPVLSPADMYRLHKYF 243 (681)
T ss_pred hhhcCCh------HHh-hhhccCccCCHHHHHHHHHHH
Confidence 5675211 110 11111 15578888888765
No 12
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=95.37 E-value=0.42 Score=43.89 Aligned_cols=93 Identities=14% Similarity=0.140 Sum_probs=51.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCChhHHHHHHHHhhcCCeEecc-----CCccc
Q 015521 140 VGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLD-----HVEGY 214 (405)
Q Consensus 140 I~V~Sa~~~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld-----~~DsY 214 (405)
|-|.|-+++.+||+.|.+..... ++.+-|+-|..+.. ++. ......+..-.... ..-+-
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~e~~~Avdg~~---l~~--~~~~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL-----------GINFEFFDAVDGRD---LSE--DELFRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCceEEEEeecccc---cch--HHHHHHhhhhhhhccccccCCcce
Confidence 44667788899999998776643 44566777665432 111 01111121111110 11111
Q ss_pred cchhHHHHHHHHHHHhccCcceEEEeCCceEeeHH
Q 015521 215 LELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIA 249 (405)
Q Consensus 215 ~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~ 249 (405)
-.=.+-.+..++-+++. +.++.+...||+.++.+
T Consensus 68 iGC~lSH~~~w~~~v~~-~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVDS-GLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHHc-CCCeEEEEecccccccc
Confidence 11134455566666642 67999999999999975
No 13
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=95.13 E-value=0.57 Score=43.10 Aligned_cols=114 Identities=13% Similarity=0.007 Sum_probs=57.5
Q ss_pred HHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhc-CCCCCeEEEEecc--CccccCC-----CCccccCcccccCCCCC
Q 015521 224 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRH-RSKPRVYIGCMKS--GPVLNQK-----GVRYHEPEYWKFGEAGN 295 (405)
Q Consensus 224 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~-~~~~~lYiG~~~~--gpv~r~~-----~~Kwy~pe~~~fgd~~~ 295 (405)
.++++.+..+.+|++.+|||+.+.++.|..++... .+.-....|.... +...... ...|+... ........
T Consensus 77 a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 155 (228)
T PF13641_consen 77 ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRF-RSGRRALG 155 (228)
T ss_dssp HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS--TT-B---
T ss_pred HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhh-hhhhcccc
Confidence 45666665679999999999999999998888776 3333333333321 1100000 01111110 11111111
Q ss_pred CCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCe
Q 015521 296 RYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVE 343 (405)
Q Consensus 296 ~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~ 343 (405)
. .++.|++.++.+++++.+-.-.. ....||..++.-+...|.+
T Consensus 156 -~-~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~ 198 (228)
T PF13641_consen 156 -V-AFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWR 198 (228)
T ss_dssp ---S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--
T ss_pred -e-eeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCc
Confidence 1 34579999999999998853222 3456999999988655544
No 14
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=94.94 E-value=0.76 Score=46.79 Aligned_cols=161 Identities=17% Similarity=0.116 Sum_probs=84.3
Q ss_pred cEEEEEEeecCCCCCChhHHHHHHHHhhcCC--eEeccCCccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHH
Q 015521 174 GIIMRFVIGHSATSGGILDRAIEAEDRKHGD--FMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATL 251 (405)
Q Consensus 174 ~v~v~FviG~s~~~~~~~~~~L~~E~~~~~D--IL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L 251 (405)
.+.++|+...+.+ .....+++=.+.|.+ +..+...+ -.....|.-...+ +.+..+.+|++..|+|+.+.++.|
T Consensus 70 ~~EIivvdd~s~D---~t~~iv~~~~~~~p~~~i~~v~~~~-~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L 144 (373)
T TIGR03472 70 GFQMLFGVQDPDD---PALAVVRRLRADFPDADIDLVIDAR-RHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYL 144 (373)
T ss_pred CeEEEEEeCCCCC---cHHHHHHHHHHhCCCCceEEEECCC-CCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHH
Confidence 3677777665532 222233322345665 32221111 1223356655444 445568999999999999999999
Q ss_pred HHHHHhcCCCCCe-EEEEeccCccccCC--------CCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccc
Q 015521 252 GQTLVRHRSKPRV-YIGCMKSGPVLNQK--------GVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHV 322 (405)
Q Consensus 252 ~~~L~~~~~~~~l-YiG~~~~gpv~r~~--------~~Kwy~pe~~~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~ 322 (405)
...+.... .+++ .+++.....+.... ..-++.|... ..... .-+.+|.|+.+++.+++.+.+---..
T Consensus 145 ~~lv~~~~-~~~v~~V~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~-~~~~~~~G~~~a~RR~~l~~iGGf~~- 220 (373)
T TIGR03472 145 RQVVAPLA-DPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFLPSVM-VARAL-GRARFCFGATMALRRATLEAIGGLAA- 220 (373)
T ss_pred HHHHHHhc-CCCcceEeccccCCCCCCHHHHHHHHHhhhhhhHHHH-HHHhc-cCCccccChhhheeHHHHHHcCChHH-
Confidence 88887763 3332 22222111000000 0011111100 00000 11345889999999999988753222
Q ss_pred cCCCCcchHHHHHHHhhCCCe
Q 015521 323 LHKYANEDVSLGSWFIGLDVE 343 (405)
Q Consensus 323 l~~~~~EDV~vG~~l~~L~v~ 343 (405)
+.....||+.+|.-+...|.+
T Consensus 221 ~~~~~~ED~~l~~~i~~~G~~ 241 (373)
T TIGR03472 221 LAHHLADDYWLGELVRALGLR 241 (373)
T ss_pred hcccchHHHHHHHHHHHcCCe
Confidence 122236999999998655533
No 15
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.02 E-value=1.3 Score=40.21 Aligned_cols=167 Identities=16% Similarity=-0.005 Sum_probs=84.6
Q ss_pred EEEEEEeecCCCCCChhHHHHH-HHHhhcCCeEeccCCccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHHH
Q 015521 175 IIMRFVIGHSATSGGILDRAIE-AEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 253 (405)
Q Consensus 175 v~v~FviG~s~~~~~~~~~~L~-~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 253 (405)
+.++.|-..+. + .....+. .....+..+..++..+. .|. .|. ..++++....+.+|++.+|+|..+.++.|..
T Consensus 29 ~eiivvdd~s~--d-~t~~~~~~~~~~~~~~v~~~~~~~~-~~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~ 102 (229)
T cd04192 29 FEVILVDDHST--D-GTVQILEFAAAKPNFQLKILNNSRV-SIS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLT 102 (229)
T ss_pred eEEEEEcCCCC--c-ChHHHHHHHHhCCCcceEEeeccCc-ccc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHH
Confidence 66766665543 2 2333344 12222334555554431 222 222 3456666666899999999999999988888
Q ss_pred HHHhcCCC-CCeEEEEeccCcc---ccC-CCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCc
Q 015521 254 TLVRHRSK-PRVYIGCMKSGPV---LNQ-KGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYAN 328 (405)
Q Consensus 254 ~L~~~~~~-~~lYiG~~~~gpv---~r~-~~~Kwy~pe~~~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~ 328 (405)
++...... ..++.|.....+. ... ..-.+........+..+..++..+.|+++++++++...+---... .....
T Consensus 103 l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~-~~~~~ 181 (229)
T cd04192 103 FVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEGN-DHIAS 181 (229)
T ss_pred HHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCccc-ccccc
Confidence 88755332 2344444321100 000 000000000000000122455567799999999999987433222 22346
Q ss_pred chHHHHHHH--hhC-CCeeecCC
Q 015521 329 EDVSLGSWF--IGL-DVEHIDDR 348 (405)
Q Consensus 329 EDV~vG~~l--~~L-~v~~~~~~ 348 (405)
||..++.-+ .+. .+..+.++
T Consensus 182 eD~~~~~~~~~~g~~~~~~~~~~ 204 (229)
T cd04192 182 GDDELLLAKVASKYPKVAYLKNP 204 (229)
T ss_pred CCHHHHHHHHHhCCCCEEEeeCc
Confidence 776665544 454 44544433
No 16
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=93.78 E-value=3 Score=38.42 Aligned_cols=160 Identities=11% Similarity=-0.036 Sum_probs=81.0
Q ss_pred CcEEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHH
Q 015521 173 KGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLG 252 (405)
Q Consensus 173 ~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~ 252 (405)
..+.++.|-+.+.+ .....++...+++..+......+. ... .+++.+.+..+.+|++.+|||..+.++.|.
T Consensus 30 ~~~evivvd~~s~d---~~~~~~~~~~~~~~~v~~i~~~~~--~~~----~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~ 100 (249)
T cd02525 30 DLIEIIVVDGGSTD---GTREIVQEYAAKDPRIRLIDNPKR--IQS----AGLNIGIRNSRGDIIIRVDAHAVYPKDYIL 100 (249)
T ss_pred CccEEEEEeCCCCc---cHHHHHHHHHhcCCeEEEEeCCCC--Cch----HHHHHHHHHhCCCEEEEECCCccCCHHHHH
Confidence 45566666555432 233444444444333433332211 111 356666665689999999999999988888
Q ss_pred HHHHhcCCCC-CeEEEEecc---Ccccc---C-CCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccC
Q 015521 253 QTLVRHRSKP-RVYIGCMKS---GPVLN---Q-KGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLH 324 (405)
Q Consensus 253 ~~L~~~~~~~-~lYiG~~~~---gpv~r---~-~~~Kwy~pe~~~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~ 324 (405)
.+++.....+ .+..|.... ++... . ....+.....+.. .....+-.++.|++.++++++...+......
T Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 177 (249)
T cd02525 101 ELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYR-GGAVKIGYVDTVHHGAYRREVFEKVGGFDES-- 177 (249)
T ss_pred HHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCcccc-ccccccccccccccceEEHHHHHHhCCCCcc--
Confidence 8886554333 233344321 11100 0 0000000000000 0000101145688889999998876432222
Q ss_pred CCCcchHHHHHHHhhCCCee
Q 015521 325 KYANEDVSLGSWFIGLDVEH 344 (405)
Q Consensus 325 ~~~~EDV~vG~~l~~L~v~~ 344 (405)
....||..++.-+...+.+.
T Consensus 178 ~~~~eD~~l~~r~~~~G~~~ 197 (249)
T cd02525 178 LVRNEDAELNYRLRKAGYKI 197 (249)
T ss_pred cCccchhHHHHHHHHcCcEE
Confidence 22479999987776555443
No 17
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=93.32 E-value=5.7 Score=35.94 Aligned_cols=134 Identities=18% Similarity=0.134 Sum_probs=78.1
Q ss_pred cEEEEEEeecCCCCCChhHHHHHHHHhhcC--CeEeccCCccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHH
Q 015521 174 GIIMRFVIGHSATSGGILDRAIEAEDRKHG--DFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATL 251 (405)
Q Consensus 174 ~v~v~FviG~s~~~~~~~~~~L~~E~~~~~--DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L 251 (405)
.+.+++|...+.+ .....+++-.+.|. ++..+...... ....|.. .++.+.+....+|++..|+|+.+.++.|
T Consensus 30 ~~eiivVdd~s~d---~t~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l 104 (196)
T cd02520 30 KYEILFCVQDEDD---PAIPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYL 104 (196)
T ss_pred CeEEEEEeCCCcc---hHHHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHH
Confidence 3677777766642 22333444444554 33222211111 1223432 3455556668999999999999999888
Q ss_pred HHHHHhcCCCCCeEEEEeccCccccCCCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchH
Q 015521 252 GQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDV 331 (405)
Q Consensus 252 ~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV 331 (405)
..++.... .+. +|.+.+ .++.|++.++.+++.+.+.--.. ...+..||.
T Consensus 105 ~~l~~~~~-~~~--~~~v~~---------------------------~~~~g~~~~~r~~~~~~~ggf~~-~~~~~~eD~ 153 (196)
T cd02520 105 RRMVAPLM-DPG--VGLVTC---------------------------LCAFGKSMALRREVLDAIGGFEA-FADYLAEDY 153 (196)
T ss_pred HHHHHHhh-CCC--CCeEEe---------------------------ecccCceeeeEHHHHHhccChHH-HhHHHHHHH
Confidence 88876542 222 122110 04678999999999988743221 222347999
Q ss_pred HHHHHHhhCCCe
Q 015521 332 SLGSWFIGLDVE 343 (405)
Q Consensus 332 ~vG~~l~~L~v~ 343 (405)
.++.-+...|.+
T Consensus 154 ~l~~rl~~~G~~ 165 (196)
T cd02520 154 FLGKLIWRLGYR 165 (196)
T ss_pred HHHHHHHHcCCe
Confidence 999888655533
No 18
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=92.73 E-value=4.7 Score=39.29 Aligned_cols=128 Identities=15% Similarity=0.167 Sum_probs=70.4
Q ss_pred HHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEE-ec--cCcccc--CC------------CCccccC-
Q 015521 224 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGC-MK--SGPVLN--QK------------GVRYHEP- 285 (405)
Q Consensus 224 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~-~~--~gpv~r--~~------------~~Kwy~p- 285 (405)
+.+.+......+|++..|+|+.+..+-|..++......+...+|. +. .+.-.. .. ...|...
T Consensus 74 a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (299)
T cd02510 74 ARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLP 153 (299)
T ss_pred HHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCC
Confidence 445555555789999999999999888888877654333333322 11 010000 00 0111111
Q ss_pred ccc-ccCC-CCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHH--HHhhCCCeeecCCCcc
Q 015521 286 EYW-KFGE-AGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGS--WFIGLDVEHIDDRRLC 351 (405)
Q Consensus 286 e~~-~fgd-~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~--~l~~L~v~~~~~~~f~ 351 (405)
..+ .... +.....++++|++.++++++...+---...+..+..||+-+.. |..|..+..+.+....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~ 223 (299)
T cd02510 154 EEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVG 223 (299)
T ss_pred HHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEE
Confidence 000 0000 0112335678999999999999886544445555679987754 4456665554444333
No 19
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.41 E-value=7.1 Score=34.95 Aligned_cols=179 Identities=14% Similarity=0.046 Sum_probs=90.0
Q ss_pred HHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCChhHHHHHHHHhhcC-CeEeccCCccccchhHHHHHHHHHHHh
Q 015521 152 RDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHG-DFMRLDHVEGYLELSAKTKIYFATAVS 230 (405)
Q Consensus 152 R~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~-DIL~ld~~DsY~nLt~Kt~~~~~wa~~ 230 (405)
-+.|.++.-+... . ....+.+++|-..|. + .....+++-..++. .+.......+. ... ..+..+..
T Consensus 10 ~~~l~~~l~sl~~----q-~~~~~eiiVvddgS~--d-~t~~~~~~~~~~~~~~~~~~~~~~~~-G~~----~~~n~g~~ 76 (214)
T cd04196 10 EKYLREQLDSILA----Q-TYKNDELIISDDGST--D-GTVEIIKEYIDKDPFIIILIRNGKNL-GVA----RNFESLLQ 76 (214)
T ss_pred HHHHHHHHHHHHh----C-cCCCeEEEEEeCCCC--C-CcHHHHHHHHhcCCceEEEEeCCCCc-cHH----HHHHHHHH
Confidence 3567777766532 1 122567777765443 2 23333433334443 23333333322 222 23333455
Q ss_pred ccCcceEEEeCCceEeeHHHHHHHHHh-cC-CCCCeEEEEec----cCccccCCCCccccCc-ccccCCCCCCCCCCCCC
Q 015521 231 LWDADFYVKVDDDVHVNIATLGQTLVR-HR-SKPRVYIGCMK----SGPVLNQKGVRYHEPE-YWKFGEAGNRYFRHATG 303 (405)
Q Consensus 231 ~~~a~fvlKvDDDvfVn~~~L~~~L~~-~~-~~~~lYiG~~~----~gpv~r~~~~Kwy~pe-~~~fgd~~~~Yp~y~~G 303 (405)
....+|++..|+|..+.++.|..++.. .. +...++.|.+. .+.......-..+... ...+ .......++.|
T Consensus 77 ~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 154 (214)
T cd04196 77 AADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSF--NNLLFQNVVTG 154 (214)
T ss_pred hCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCH--HHHHHhCccCC
Confidence 568999999999999999888888876 22 22333333321 1111111100000000 0000 00112245678
Q ss_pred CceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCC-CeeecC
Q 015521 304 QLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD-VEHIDD 347 (405)
Q Consensus 304 ~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~-v~~~~~ 347 (405)
++.++.+++++.+....... ...||..+...+...+ +-.++.
T Consensus 155 ~~~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~ 197 (214)
T cd04196 155 CTMAFNRELLELALPFPDAD--VIMHDWWLALLASAFGKVVFLDE 197 (214)
T ss_pred ceeeEEHHHHHhhccccccc--cccchHHHHHHHHHcCceEEcch
Confidence 99999999999875443322 4578888776665433 444443
No 20
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=92.38 E-value=0.23 Score=45.46 Aligned_cols=119 Identities=16% Similarity=0.096 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCC-CCCeEEEEeccCccccCCCCcc--cc-------Ccc
Q 015521 218 SAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRS-KPRVYIGCMKSGPVLNQKGVRY--HE-------PEY 287 (405)
Q Consensus 218 t~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~-~~~lYiG~~~~gpv~r~~~~Kw--y~-------pe~ 287 (405)
..|+-..........+.++++..|+|+.|+++-|..++..... +-.+ ..++..+ ....+-| .+ +.-
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vgl-Vt~~~~~---~~~~~~~~~l~~~~~~~~~~~ 91 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGL-VTGLPRG---VPARGFWSRLEAAFFNFLPGV 91 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcE-EEecccc---cCCcCHHHHHHHHHHhHHHHH
Confidence 4666555543332368999999999999999999998877643 2222 2222111 0111100 01 111
Q ss_pred cccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCeee
Q 015521 288 WKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVEHI 345 (405)
Q Consensus 288 ~~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~~~ 345 (405)
+.. -...+++.|+.+++.+++++.+--- ..+..+--||..+|..+...|.+.+
T Consensus 92 ~~a----~~~~~~~~G~~m~~rr~~L~~~GG~-~~l~~~ladD~~l~~~~~~~G~~v~ 144 (175)
T PF13506_consen 92 LQA----LGGAPFAWGGSMAFRREALEEIGGF-EALADYLADDYALGRRLRARGYRVV 144 (175)
T ss_pred HHH----hcCCCceecceeeeEHHHHHHcccH-HHHhhhhhHHHHHHHHHHHCCCeEE
Confidence 110 1235679999999999999876321 1233456899999999987776654
No 21
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=91.89 E-value=4.5 Score=41.35 Aligned_cols=160 Identities=17% Similarity=0.096 Sum_probs=80.7
Q ss_pred cEEEEEEeecCCCCCChhHHHHHHHHhhcC---CeEeccCCccccchhHHHH---HHHHHHHh-ccCcceEEEeCCceEe
Q 015521 174 GIIMRFVIGHSATSGGILDRAIEAEDRKHG---DFMRLDHVEGYLELSAKTK---IYFATAVS-LWDADFYVKVDDDVHV 246 (405)
Q Consensus 174 ~v~v~FviG~s~~~~~~~~~~L~~E~~~~~---DIL~ld~~DsY~nLt~Kt~---~~~~wa~~-~~~a~fvlKvDDDvfV 246 (405)
.+.+++|-..|.+ + ....+++=.+++. .+..+...+.-.+-.-|.. .+++.|.. ..+.+|++.+|+|+.+
T Consensus 70 ~~eIIVVDd~StD--~-T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~ 146 (384)
T TIGR03469 70 KLHVILVDDHSTD--G-TADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAH 146 (384)
T ss_pred ceEEEEEeCCCCC--c-HHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCC
Confidence 4677777666542 2 2222222223333 3444432221122234432 24444433 2348999999999999
Q ss_pred eHHHHHHHHHhcCCCC-CeEEEEeccCccccCCCCcccc-----------CcccccCCCCCCCCCCCCCCceeeCHHHHH
Q 015521 247 NIATLGQTLVRHRSKP-RVYIGCMKSGPVLNQKGVRYHE-----------PEYWKFGEAGNRYFRHATGQLYAISKDLAA 314 (405)
Q Consensus 247 n~~~L~~~L~~~~~~~-~lYiG~~~~gpv~r~~~~Kwy~-----------pe~~~fgd~~~~Yp~y~~G~gYvLS~dla~ 314 (405)
.++.|.+.++.....+ .+..|..... . .....+... |-.|. .+ .......+.|++.++++++.+
T Consensus 147 ~p~~l~~lv~~~~~~~~~~vs~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~G~~~lirr~~~~ 222 (384)
T TIGR03469 147 GPDNLARLVARARAEGLDLVSLMVRLR-C-ESFWEKLLIPAFVFFFQKLYPFRWV-ND-PRRRTAAAAGGCILIRREALE 222 (384)
T ss_pred ChhHHHHHHHHHHhCCCCEEEeccccc-C-CCHHHHHHHHHHHHHHHHhcchhhh-cC-CCccceeecceEEEEEHHHHH
Confidence 9999888887654322 2222222100 0 000000000 10111 01 112234467999999999998
Q ss_pred HHHHhccccCCCCcchHHHHHHHhhCC
Q 015521 315 YISINQHVLHKYANEDVSLGSWFIGLD 341 (405)
Q Consensus 315 ~I~~~~~~l~~~~~EDV~vG~~l~~L~ 341 (405)
.+---..... ...||+.++.-+...|
T Consensus 223 ~vGGf~~~~~-~~~ED~~L~~r~~~~G 248 (384)
T TIGR03469 223 RIGGIAAIRG-ALIDDCTLAAAVKRSG 248 (384)
T ss_pred HcCCHHHHhh-CcccHHHHHHHHHHcC
Confidence 8733222112 2479999999886544
No 22
>PRK11204 N-glycosyltransferase; Provisional
Probab=91.76 E-value=8.1 Score=39.57 Aligned_cols=191 Identities=13% Similarity=0.092 Sum_probs=99.0
Q ss_pred eeEEEEEECCCCCHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCcccc
Q 015521 136 YLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYL 215 (405)
Q Consensus 136 ~~llI~V~Sa~~~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~ 215 (405)
+.+-|.|.+--+. +.|++|-.+-.. .. .....++.|-..+. +...+.+++..+++..+..++..+
T Consensus 54 p~vsViIp~yne~----~~i~~~l~sl~~----q~-yp~~eiiVvdD~s~---d~t~~~l~~~~~~~~~v~~i~~~~--- 118 (420)
T PRK11204 54 PGVSILVPCYNEG----ENVEETISHLLA----LR-YPNYEVIAINDGSS---DNTGEILDRLAAQIPRLRVIHLAE--- 118 (420)
T ss_pred CCEEEEEecCCCH----HHHHHHHHHHHh----CC-CCCeEEEEEECCCC---ccHHHHHHHHHHhCCcEEEEEcCC---
Confidence 4455666653322 456666554321 11 12345544333222 233444554555666565554333
Q ss_pred chhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEeccCccccCCCCccccC----ccc---
Q 015521 216 ELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEP----EYW--- 288 (405)
Q Consensus 216 nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~p----e~~--- 288 (405)
|.. |. ..++.+.+..+.+|++..|+|..+..+.|.+++......+++ |.+.+.+...+.. .+... ++.
T Consensus 119 n~G-ka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--~~v~g~~~~~~~~-~~~~~~~~~~~~~~~ 193 (420)
T PRK11204 119 NQG-KA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--GAVTGNPRIRNRS-TLLGRIQVGEFSSII 193 (420)
T ss_pred CCC-HH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--EEEECCceeccch-hHHHHHHHHHHHHhh
Confidence 222 43 355666666789999999999999999998888776434442 3332222221111 11000 000
Q ss_pred ---ccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHh--hCCCeeecCCC
Q 015521 289 ---KFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHIDDRR 349 (405)
Q Consensus 289 ---~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~~~~~~ 349 (405)
+........+...+|.+.++.++++..+---. +....||+-++.-+. |..+...++..
T Consensus 194 ~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~---~~~~~ED~~l~~rl~~~G~~i~~~p~~~ 256 (420)
T PRK11204 194 GLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWS---TDMITEDIDISWKLQLRGWDIRYEPRAL 256 (420)
T ss_pred hHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCC---CCcccchHHHHHHHHHcCCeEEeccccE
Confidence 00000001122357888999999988763211 223479999998875 44455555443
No 23
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=91.48 E-value=3 Score=35.16 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=65.7
Q ss_pred CcEEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHH
Q 015521 173 KGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLG 252 (405)
Q Consensus 173 ~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~ 252 (405)
..+.+++|-..+. +.....+.+-.+....+..+...+.. .+. ..+..+.+....+|++.+|||.++..+.|.
T Consensus 26 ~~~eiivvdd~s~---d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~----~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~ 97 (169)
T PF00535_consen 26 PDFEIIVVDDGST---DETEEILEEYAESDPNIRYIRNPENL-GFS----AARNRGIKHAKGEYILFLDDDDIISPDWLE 97 (169)
T ss_dssp CEEEEEEEECS-S---SSHHHHHHHHHCCSTTEEEEEHCCCS-HHH----HHHHHHHHH--SSEEEEEETTEEE-TTHHH
T ss_pred CCEEEEEeccccc---cccccccccccccccccccccccccc-ccc----ccccccccccceeEEEEeCCCceEcHHHHH
Confidence 3456655555442 23444444333324445555444433 222 234444444566799999999999998777
Q ss_pred HHHHhcCC-CCCeEEEEec--cCcc--ccCCCC--ccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHH
Q 015521 253 QTLVRHRS-KPRVYIGCMK--SGPV--LNQKGV--RYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYI 316 (405)
Q Consensus 253 ~~L~~~~~-~~~lYiG~~~--~gpv--~r~~~~--Kwy~pe~~~fgd~~~~Yp~y~~G~gYvLS~dla~~I 316 (405)
.++..... ...+.+|... .... ...... .+..............-..++.|++.++++++.+.+
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 98 ELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred HHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhh
Confidence 77766543 3345555532 1111 000000 111110000000112334467889999999988764
No 24
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=90.72 E-value=2 Score=39.32 Aligned_cols=121 Identities=12% Similarity=0.018 Sum_probs=68.9
Q ss_pred HHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeE-E-EEec--c-Ccc---ccCC--CCccccCc-ccccCCC
Q 015521 225 FATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVY-I-GCMK--S-GPV---LNQK--GVRYHEPE-YWKFGEA 293 (405)
Q Consensus 225 ~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lY-i-G~~~--~-gpv---~r~~--~~Kwy~pe-~~~fgd~ 293 (405)
++.+.+..+.+|++.+|+|+++.++.|..++......+++. + |... . ... .+.. ....+... .+. .
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 152 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPG---R 152 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHH---H
Confidence 45555555899999999999999998888887764434432 1 2111 0 000 0000 00000000 000 0
Q ss_pred CCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCC--CeeecCCCcc
Q 015521 294 GNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDDRRLC 351 (405)
Q Consensus 294 ~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~~~~~~f~ 351 (405)
......++.|++.++++++++.+---. ..+..||..++.-+...+ +..+++....
T Consensus 153 ~~~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~ 209 (234)
T cd06421 153 DRWGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEPLAA 209 (234)
T ss_pred hhcCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCcccc
Confidence 011244578999999999998864221 234589999998886554 5555555443
No 25
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.53 E-value=16 Score=31.95 Aligned_cols=114 Identities=12% Similarity=-0.063 Sum_probs=63.8
Q ss_pred HHHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcC--CCCCeEEEEec--cCccccCCCCccccCcccccCCCCCCCC
Q 015521 223 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHR--SKPRVYIGCMK--SGPVLNQKGVRYHEPEYWKFGEAGNRYF 298 (405)
Q Consensus 223 ~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~--~~~~lYiG~~~--~gpv~r~~~~Kwy~pe~~~fgd~~~~Yp 298 (405)
..++.+.+..+.+|++.+|+|..+..+.+...+.... +...+..|... .+... ....+...+. .. ......
T Consensus 65 ~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~-~~~~~~~~~~-~~---~~~~~~ 139 (202)
T cd06433 65 DAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGR-VIGRRRPPPF-LD---KFLLYG 139 (202)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCC-cccCCCCcch-hh---hHHhhc
Confidence 3455566666889999999999999999988873332 33445555532 11110 0000100011 00 111233
Q ss_pred CCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCe
Q 015521 299 RHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVE 343 (405)
Q Consensus 299 ~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~ 343 (405)
.+..|++.++++++.+.+-.-...+ ...||..+..-+...+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~D~~~~~r~~~~g~~ 182 (202)
T cd06433 140 MPICHQATFFRRSLFEKYGGFDESY--RIAADYDLLLRLLLAGKI 182 (202)
T ss_pred CcccCcceEEEHHHHHHhCCCchhh--CchhhHHHHHHHHHcCCc
Confidence 4566788899999998875322222 235788777666554433
No 26
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=87.95 E-value=8.6 Score=32.22 Aligned_cols=152 Identities=11% Similarity=0.022 Sum_probs=73.7
Q ss_pred HHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCChhHHHHHHHHhhc-CCeEeccCCccccchhHHHHHHHHHHHhc
Q 015521 153 DSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKH-GDFMRLDHVEGYLELSAKTKIYFATAVSL 231 (405)
Q Consensus 153 ~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~-~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~ 231 (405)
+.|++|-.+-.. .. ...+.++++-..+. + .....+.++...+ ..++...... |.. ....++++.+.
T Consensus 10 ~~l~~~l~sl~~---q~--~~~~~iivvdd~s~--d-~t~~~~~~~~~~~~~~~~~~~~~~---~~g--~~~~~n~~~~~ 76 (180)
T cd06423 10 AVIERTIESLLA---LD--YPKLEVIVVDDGST--D-DTLEILEELAALYIRRVLVVRDKE---NGG--KAGALNAGLRH 76 (180)
T ss_pred HHHHHHHHHHHh---CC--CCceEEEEEeCCCc--c-chHHHHHHHhccccceEEEEEecc---cCC--chHHHHHHHHh
Confidence 677777665421 11 13556655554443 2 2333344443333 1222222222 111 12355556665
Q ss_pred cCcceEEEeCCceEeeHHHHHHHHHhcCCCCC--eEEEEecc---C-ccccC-CCCccccCccccc-CCCCCCCCCCCCC
Q 015521 232 WDADFYVKVDDDVHVNIATLGQTLVRHRSKPR--VYIGCMKS---G-PVLNQ-KGVRYHEPEYWKF-GEAGNRYFRHATG 303 (405)
Q Consensus 232 ~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~--lYiG~~~~---g-pv~r~-~~~Kwy~pe~~~f-gd~~~~Yp~y~~G 303 (405)
.+.+|++.+|+|..+....|..++......+. +..|.... . ..... ...+++....... +.....+...+.|
T Consensus 77 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 156 (180)
T cd06423 77 AKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGGVLVLSG 156 (180)
T ss_pred cCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheecceeecCc
Confidence 69999999999999998888877555433333 22233221 1 11100 0011111100000 0001234456789
Q ss_pred CceeeCHHHHHHHH
Q 015521 304 QLYAISKDLAAYIS 317 (405)
Q Consensus 304 ~gYvLS~dla~~I~ 317 (405)
.+++++++++..+-
T Consensus 157 ~~~~~~~~~~~~~g 170 (180)
T cd06423 157 AFGAFRREALREVG 170 (180)
T ss_pred hHHHHHHHHHHHhC
Confidence 99999999988754
No 27
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=87.77 E-value=16 Score=33.97 Aligned_cols=120 Identities=17% Similarity=0.089 Sum_probs=62.2
Q ss_pred HHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCC-CCCeEEEEecc-CccccCCCCccc--cCcccccCCCCCCCCC
Q 015521 224 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRS-KPRVYIGCMKS-GPVLNQKGVRYH--EPEYWKFGEAGNRYFR 299 (405)
Q Consensus 224 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~-~~~lYiG~~~~-gpv~r~~~~Kwy--~pe~~~fgd~~~~Yp~ 299 (405)
.++.+.+....+|++.+|+|+.+..+-|.+++..... ...+..|.... .+.-.......+ ....+..-......+.
T Consensus 100 a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (251)
T cd06439 100 ALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGSTV 179 (251)
T ss_pred HHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCee
Confidence 4455555556799999999999998888888877642 22333333211 110000000000 0000000000011233
Q ss_pred CCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCC--CeeecCCC
Q 015521 300 HATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDDRR 349 (405)
Q Consensus 300 y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~~~~~~ 349 (405)
.+.|+++++.+++.. ........||..++.-+...| +..+++..
T Consensus 180 ~~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~~~~~~~~~~ 225 (251)
T cd06439 180 GANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGYRVVYEPDAV 225 (251)
T ss_pred eecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCCeEEeccccE
Confidence 467888888887776 112223479999988886555 44444433
No 28
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=87.44 E-value=4.8 Score=35.62 Aligned_cols=136 Identities=10% Similarity=0.055 Sum_probs=74.0
Q ss_pred CcEEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHH
Q 015521 173 KGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLG 252 (405)
Q Consensus 173 ~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~ 252 (405)
..+.++.|-+.+. ++ ....+.....++..+..+++...+. |. .+++.+......+|++.+|+|.....+.|.
T Consensus 28 ~~~eiivvdd~s~--d~-t~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 99 (181)
T cd04187 28 YDYEIIFVDDGST--DR-TLEILRELAARDPRVKVIRLSRNFG----QQ-AALLAGLDHARGDAVITMDADLQDPPELIP 99 (181)
T ss_pred CCeEEEEEeCCCC--cc-HHHHHHHHHhhCCCEEEEEecCCCC----cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 3466666665553 22 2333444444555565555443321 11 344555555567999999999999988888
Q ss_pred HHHHhcCCCCCeEEEEeccC--ccccCCCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHHh
Q 015521 253 QTLVRHRSKPRVYIGCMKSG--PVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISIN 319 (405)
Q Consensus 253 ~~L~~~~~~~~lYiG~~~~g--pv~r~~~~Kwy~pe~~~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~ 319 (405)
.++....+...+.+|..... +....-..+.+......+ .....+...|+.+++++++++.+..-
T Consensus 100 ~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~i~~~ 165 (181)
T cd04187 100 EMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKL---SGVDIPDNGGDFRLMDRKVVDALLLL 165 (181)
T ss_pred HHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHH---cCCCCCCCCCCEEEEcHHHHHHHHhc
Confidence 88876544556666664311 110000001000000000 11233456788899999999987643
No 29
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=86.83 E-value=12 Score=33.45 Aligned_cols=114 Identities=16% Similarity=0.125 Sum_probs=62.4
Q ss_pred HHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCC--CeEEEEecc----CccccCCCCccccCc----ccccCCC
Q 015521 224 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKP--RVYIGCMKS----GPVLNQKGVRYHEPE----YWKFGEA 293 (405)
Q Consensus 224 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~--~lYiG~~~~----gpv~r~~~~Kwy~pe----~~~fgd~ 293 (405)
.++.+....+.+|++..|+|.++.++.|...+......+ .++.|.+.. +.... .+. .|. ...+...
T Consensus 71 a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~ 146 (201)
T cd04195 71 ALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIG---KRR-LPTSHDDILKFARR 146 (201)
T ss_pred HHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeec---ccc-CCCCHHHHHHHhcc
Confidence 455566656899999999999999999888887653333 344443321 11110 000 111 0011000
Q ss_pred CCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHh--hCCCeeecCC
Q 015521 294 GNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHIDDR 348 (405)
Q Consensus 294 ~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~~~~~ 348 (405)
. -+ ..|+..++.+.++..+-.-. .....||..+...+. |..+.++++.
T Consensus 147 --~-~~-~~~~~~~~rr~~~~~~g~~~---~~~~~eD~~~~~r~~~~g~~~~~~~~~ 196 (201)
T cd04195 147 --R-SP-FNHPTVMFRKSKVLAVGGYQ---DLPLVEDYALWARMLANGARFANLPEI 196 (201)
T ss_pred --C-CC-CCChHHhhhHHHHHHcCCcC---CCCCchHHHHHHHHHHcCCceecccHH
Confidence 1 11 24566777777766542211 224689999988875 4455555443
No 30
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=86.70 E-value=18 Score=30.56 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=56.1
Q ss_pred HHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCe-EEEEeccCccccCCCCccccCcccccCCCCCCCCCCCCCCce
Q 015521 228 AVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRV-YIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLY 306 (405)
Q Consensus 228 a~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~l-YiG~~~~gpv~r~~~~Kwy~pe~~~fgd~~~~Yp~y~~G~gY 306 (405)
+.+..+.+|++..|||..+..+.+..++......+.+ .++.. +.|++.
T Consensus 69 ~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~ 117 (166)
T cd04186 69 GIREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-------------------------------VSGAFL 117 (166)
T ss_pred HHhhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-------------------------------CceeeE
Confidence 3344489999999999999999888888754333321 11211 568889
Q ss_pred eeCHHHHHHHHHhccccCCCCcchHHHHHHHh--hCCCeeec
Q 015521 307 AISKDLAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHID 346 (405)
Q Consensus 307 vLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~~~ 346 (405)
++++++++.+..-...... ..||..+..-+. |..+...+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~i~~~~ 158 (166)
T cd04186 118 LVRREVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYRVLYVP 158 (166)
T ss_pred eeeHHHHHHcCCCChhhhc-cccHHHHHHHHHHcCCeEEEcc
Confidence 9999988876432222211 568988877665 44444433
No 31
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=86.49 E-value=10 Score=32.62 Aligned_cols=117 Identities=12% Similarity=0.036 Sum_probs=66.4
Q ss_pred EEEECCCCCHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCChhHHHHHHHHhhcCC-eEeccCCccccchh
Q 015521 140 VGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGD-FMRLDHVEGYLELS 218 (405)
Q Consensus 140 I~V~Sa~~~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~D-IL~ld~~DsY~nLt 218 (405)
|-|.+-+++.+||+.+++.-... ++.+.|+-|..+... ....+......+.. ....+..-+--.-.
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~~~~~Avd~~~~--~~~~~~~~~~~~~~~~~~~~l~~gEiGC~ 68 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL-----------GLDFEFFDAVDGKDL--SEEELAALYDALFLPRYGRPLTPGEIGCF 68 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCCeEEEeccccccC--CHHHHHHHhHHHhhhhcCCCCChhhHHHH
Confidence 34567788899999999955433 456667776654311 11112111110000 00011111111122
Q ss_pred HHHHHHHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEeccCccccCCCCccccCcccccCCCCCCCC
Q 015521 219 AKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYF 298 (405)
Q Consensus 219 ~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~fgd~~~~Yp 298 (405)
+-.+..|+.+++ .+.++.+...||+.+..+
T Consensus 69 lSH~~~w~~~~~-~~~~~alIlEDDv~~~~~------------------------------------------------- 98 (128)
T cd06532 69 LSHYKLWQKIVE-SNLEYALILEDDAILDPD------------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHHH-cCCCeEEEEccCcEECCC-------------------------------------------------
Confidence 333445554544 366899999999998876
Q ss_pred CCCCCCceeeCHHHHHHHHHhccc
Q 015521 299 RHATGQLYAISKDLAAYISINQHV 322 (405)
Q Consensus 299 ~y~~G~gYvLS~dla~~I~~~~~~ 322 (405)
+..+|++|+..|+.+......
T Consensus 99 ---~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 ---GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred ---CceEEEeCHHHHHHHHHhCCC
Confidence 346899999999999887644
No 32
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=85.14 E-value=27 Score=31.04 Aligned_cols=111 Identities=13% Similarity=0.099 Sum_probs=59.9
Q ss_pred HHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcC--CCCCeEEEEec---cCccccCCCCccccCcccccCCCCCCCC
Q 015521 224 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHR--SKPRVYIGCMK---SGPVLNQKGVRYHEPEYWKFGEAGNRYF 298 (405)
Q Consensus 224 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~--~~~~lYiG~~~---~gpv~r~~~~Kwy~pe~~~fgd~~~~Yp 298 (405)
.++++.+....+|++..|+|..+..+.|...++... ++..+..+... ...... ..++.+. |.. ...+.
T Consensus 74 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~-~~~---~~~~~ 146 (202)
T cd04184 74 ATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRS---EPFFKPD-WSP---DLLLS 146 (202)
T ss_pred HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEe---ccccCCC-CCH---HHhhh
Confidence 455555556789999999999999998888887652 22233323211 000000 1111111 110 00111
Q ss_pred CCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCe
Q 015521 299 RHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVE 343 (405)
Q Consensus 299 ~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~ 343 (405)
.-+.|++-+++++++..+---... ....||.-++.-+...+.+
T Consensus 147 ~~~~~~~~~~~r~~~~~iggf~~~--~~~~eD~~l~~rl~~~g~~ 189 (202)
T cd04184 147 QNYIGHLLVYRRSLVRQVGGFREG--FEGAQDYDLVLRVSEHTDR 189 (202)
T ss_pred cCCccceEeEEHHHHHHhCCCCcC--cccchhHHHHHHHHhccce
Confidence 113455667898888776432211 2256998888777555433
No 33
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=84.80 E-value=54 Score=34.20 Aligned_cols=190 Identities=13% Similarity=0.081 Sum_probs=97.3
Q ss_pred eeEEEEEECCCCCHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCcccc
Q 015521 136 YLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYL 215 (405)
Q Consensus 136 ~~llI~V~Sa~~~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~ 215 (405)
+.+-|+|.+--+. ..|++|-.+-.. . ....+.+++|-..+. +...+.+++..+++..+......+
T Consensus 75 p~vsViIP~yNE~----~~i~~~l~sll~----q-~yp~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~~~~--- 139 (444)
T PRK14583 75 PLVSILVPCFNEG----LNARETIHAALA----Q-TYTNIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIHLAH--- 139 (444)
T ss_pred CcEEEEEEeCCCH----HHHHHHHHHHHc----C-CCCCeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEEeCC---
Confidence 4455656554322 235555544321 1 112466655554442 223344444455565554433222
Q ss_pred chhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEeccCccccCCC---CccccCcccc-cC
Q 015521 216 ELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKG---VRYHEPEYWK-FG 291 (405)
Q Consensus 216 nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~---~Kwy~pe~~~-fg 291 (405)
|.. |. ..++.+....+.+|++..|.|..+..+.|...++.....++ +|.+.+.+..++.. .+....++.. ++
T Consensus 140 n~G-ka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~--~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~ 215 (444)
T PRK14583 140 NQG-KA-IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPR--TGAVTGNPRIRTRSTLIGRVQVGEFSSIIG 215 (444)
T ss_pred CCC-HH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCC--eEEEEccceecCCCcchhhHHHHHHHHHHH
Confidence 222 33 35666666678999999999999999999888876533343 23333222222211 1111111000 00
Q ss_pred C--CC-CC--CCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCC--CeeecC
Q 015521 292 E--AG-NR--YFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDD 347 (405)
Q Consensus 292 d--~~-~~--Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~~~~ 347 (405)
. +. .. -+..++|.+.++.+++++.+---. +....||..+|.-+...| +...++
T Consensus 216 ~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~---~~~i~ED~dl~~rl~~~G~~i~~~p~ 275 (444)
T PRK14583 216 LIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWS---PDMITEDIDISWKLQLKHWSVFFEPR 275 (444)
T ss_pred HHHHHHHHhCCceEecCceeEEEHHHHHHcCCCC---CCcccccHHHHHHHHHcCCeEEEeec
Confidence 0 00 00 112357888999999988763222 223469999998886544 544444
No 34
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=84.69 E-value=2.8 Score=37.63 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=67.2
Q ss_pred eEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEE--eccCccccCCCCccccCcc-c---c--cCCCCCCCCCCCCCCcee
Q 015521 236 FYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGC--MKSGPVLNQKGVRYHEPEY-W---K--FGEAGNRYFRHATGQLYA 307 (405)
Q Consensus 236 fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~--~~~gpv~r~~~~Kwy~pe~-~---~--fgd~~~~Yp~y~~G~gYv 307 (405)
|++-+|+|+.+..+-|.+.+.... .|++-++. .... .....-.++..-++ + . ........+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFR-NRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEec-CCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 688999999999999888887765 34322222 2110 00000011111111 0 0 000012346678899999
Q ss_pred eCHHHHHHHHHhccccCCCCcchHHHHHHHh--hCCCeeecCCCcccCCCC
Q 015521 308 ISKDLAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHIDDRRLCCGTPP 356 (405)
Q Consensus 308 LS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~~~~~~f~~~~~~ 356 (405)
+++++++.+.--. -..+..||..++.-+. |..+..+++....+..|+
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~ 127 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAPP 127 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeeeCCC
Confidence 9999999874221 1234579999987774 556777777755554443
No 35
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=83.95 E-value=6.2 Score=36.24 Aligned_cols=157 Identities=13% Similarity=0.093 Sum_probs=79.0
Q ss_pred cEEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHHH
Q 015521 174 GIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 253 (405)
Q Consensus 174 ~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 253 (405)
...+++|...+. +.....+ .+...+..+.... .+. . -|. ..+..+....+.+|++.+|+|+.+..+.|..
T Consensus 28 ~~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~-~~~-~---g~~-~a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~ 97 (235)
T cd06434 28 PLEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVIT-VPH-P---GKR-RALAEGIRHVTTDIVVLLDSDTVWPPNALPE 97 (235)
T ss_pred CCEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEe-cCC-C---ChH-HHHHHHHHHhCCCEEEEECCCceeChhHHHH
Confidence 345666655443 2233333 3445566655553 221 1 233 2334444445899999999999999999988
Q ss_pred HHHhcCCCCCeEEEEeccCccccCC-CCcccc---Ccccc---c---CCCCCCCCCCCCCCceeeCHHHHHHHHHhccc-
Q 015521 254 TLVRHRSKPRVYIGCMKSGPVLNQK-GVRYHE---PEYWK---F---GEAGNRYFRHATGQLYAISKDLAAYISINQHV- 322 (405)
Q Consensus 254 ~L~~~~~~~~lYiG~~~~gpv~r~~-~~Kwy~---pe~~~---f---gd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~- 322 (405)
.+.... .+.+ |.+......... ...|.. ...+. . ......-...++|++.++.++++..+.-....
T Consensus 98 l~~~~~-~~~v--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~~~~~~ 174 (235)
T cd06434 98 MLKPFE-DPKV--GGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEEFT 174 (235)
T ss_pred HHHhcc-CCCE--eEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhhHHHhh
Confidence 888775 4432 222110000010 011100 00000 0 00000001235688888888888765432111
Q ss_pred ------cCCCCcchHHHHHHHhhCCCe
Q 015521 323 ------LHKYANEDVSLGSWFIGLDVE 343 (405)
Q Consensus 323 ------l~~~~~EDV~vG~~l~~L~v~ 343 (405)
.+....||..++.-+...+.+
T Consensus 175 ~~~~~~~~~~~~eD~~l~~~~~~~g~~ 201 (235)
T cd06434 175 NETFMGRRLNAGDDRFLTRYVLSHGYK 201 (235)
T ss_pred hhhhcCCCCCcCchHHHHHHHHHCCCe
Confidence 233467999998887655543
No 36
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=82.18 E-value=37 Score=30.35 Aligned_cols=101 Identities=15% Similarity=0.086 Sum_probs=60.3
Q ss_pred HHHHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcC-CCCCeEEEEeccCccccCCCCccccCcccccCCCCCCCCCC
Q 015521 222 KIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHR-SKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRH 300 (405)
Q Consensus 222 ~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~-~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~fgd~~~~Yp~y 300 (405)
-..+++|. ..+.+|++..|||..+..+-|..++.... +...++.|.. +.. .+
T Consensus 69 n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~------------------~~~--~~------ 121 (202)
T cd04185 69 YEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLV------------------LDP--DG------ 121 (202)
T ss_pred HHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEeccee------------------EcC--CC------
Confidence 34566665 56899999999999999888777776553 1112221111 000 01
Q ss_pred CCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHh--hCCCeeecCCCccc
Q 015521 301 ATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHIDDRRLCC 352 (405)
Q Consensus 301 ~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~~~~~~f~~ 352 (405)
.+++.++.++++..+--...... +..||+.++.-+. |..+ ...+..+.+
T Consensus 122 -~~~~~~~~~~~~~~~g~~~~~~~-~~~eD~~~~~r~~~~G~~i-~~~~~~~~h 172 (202)
T cd04185 122 -SFVGVLISRRVVEKIGLPDKEFF-IWGDDTEYTLRASKAGPGI-YVPDAVVVH 172 (202)
T ss_pred -ceEEEEEeHHHHHHhCCCChhhh-ccchHHHHHHHHHHcCCcE-EecceEEEE
Confidence 34567899999887643222222 3469999987775 4445 444444444
No 37
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=81.42 E-value=30 Score=31.71 Aligned_cols=128 Identities=13% Similarity=0.004 Sum_probs=64.5
Q ss_pred HHHHHHHhccCcceEEEeCCceEeeHHHHHHHH---HhcCCCCCeE-EEEeccCccccCCCCccccCccc---ccCC-CC
Q 015521 223 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTL---VRHRSKPRVY-IGCMKSGPVLNQKGVRYHEPEYW---KFGE-AG 294 (405)
Q Consensus 223 ~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L---~~~~~~~~lY-iG~~~~gpv~r~~~~Kwy~pe~~---~fgd-~~ 294 (405)
.+++.|... +++|++..|+|+.+.++.|..++ ......+.+. +|+.............+.....+ .... ..
T Consensus 66 ~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (237)
T cd02526 66 IGIKAALEN-GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEG 144 (237)
T ss_pred HHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCC
Confidence 355554432 78999999999999999888885 3332333322 23321000000000000000000 0000 00
Q ss_pred CCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCC--CeeecCCCccc
Q 015521 295 NRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDDRRLCC 352 (405)
Q Consensus 295 ~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~~~~~~f~~ 352 (405)
..-..++.|++.++++++...+---...+ .+..||+.++.-+...+ +..+++....+
T Consensus 145 ~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v~h 203 (237)
T cd02526 145 LKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVLKH 203 (237)
T ss_pred ceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCcEEEEcCeEEEe
Confidence 11123345778899999988874322222 13478999988875444 54544444433
No 38
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=80.63 E-value=45 Score=30.58 Aligned_cols=118 Identities=15% Similarity=0.119 Sum_probs=64.6
Q ss_pred HHHHHHhc--cCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEeccCccccCCCCccccC------cccc-cCCCC
Q 015521 224 YFATAVSL--WDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEP------EYWK-FGEAG 294 (405)
Q Consensus 224 ~~~wa~~~--~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~p------e~~~-fgd~~ 294 (405)
.++++.+. .+.+|++..|+|+.+.++.|..++.... .+. +|.+.+....++....++.. ..++ .+.+.
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPR--VGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVS 149 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCC--eeEEecCccccCCCccHHHHHHhHHHHHHHHHHhcc
Confidence 46666653 2479999999999999999999887764 333 23221100111111111110 0000 00000
Q ss_pred -CC-CCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCC--CeeecC
Q 015521 295 -NR-YFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDD 347 (405)
Q Consensus 295 -~~-Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~~~~ 347 (405)
.. --.++.|++.+++++++..+---.. .+..||+-++.=+...+ +...++
T Consensus 150 ~~~~~~~~~~g~~~~~rr~~~~~iGgf~~---~~~~eD~dl~~r~~~~G~~~~~~~~ 203 (236)
T cd06435 150 RNERNAIIQHGTMCLIRRSALDDVGGWDE---WCITEDSELGLRMHEAGYIGVYVAQ 203 (236)
T ss_pred ccccCceEEecceEEEEHHHHHHhCCCCC---ccccchHHHHHHHHHCCcEEEEcch
Confidence 00 0124678889999999998743222 23589999988775554 444443
No 39
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=79.96 E-value=11 Score=33.03 Aligned_cols=97 Identities=12% Similarity=0.044 Sum_probs=58.7
Q ss_pred HHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEeccCccccCCCCccccCcccccCCCCCCCCCCCCC
Q 015521 224 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATG 303 (405)
Q Consensus 224 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~fgd~~~~Yp~y~~G 303 (405)
.++.+.+....+|++..|+|..+..+-|...++...+ .....|... +..+ .. . .....|
T Consensus 70 ~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~-~~~v~g~~~------------~~~~------~~-~-~~~~~~ 128 (182)
T cd06420 70 IRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEP-GVFLSGSRV------------LLNE------KL-T-ERGIRG 128 (182)
T ss_pred HHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCC-CcEEeccee------------eccc------cc-c-eeEecc
Confidence 3455555568899999999999999888888876632 222223211 0000 00 0 023457
Q ss_pred CceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCC
Q 015521 304 QLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD 341 (405)
Q Consensus 304 ~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~ 341 (405)
+.+++.+..+..+.--......+..||+-++.-+...+
T Consensus 129 ~~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 129 CNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred ceEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcC
Confidence 77888888877543333333334579999988776555
No 40
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=78.95 E-value=3.2 Score=40.57 Aligned_cols=52 Identities=19% Similarity=0.144 Sum_probs=41.1
Q ss_pred CCCceeeCHHHHHHHHHhcc-cc---CCCCcchHHHHHHHhhCCCeeecCCCcccC
Q 015521 302 TGQLYAISKDLAAYISINQH-VL---HKYANEDVSLGSWFIGLDVEHIDDRRLCCG 353 (405)
Q Consensus 302 ~G~gYvLS~dla~~I~~~~~-~l---~~~~~EDV~vG~~l~~L~v~~~~~~~f~~~ 353 (405)
+|+|++||..||+.|..... .+ +.+.--|--+..|+..++|.-..+++|...
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~ 67 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQM 67 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeE
Confidence 79999999999999998642 22 334457999999998888887777888764
No 41
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=75.55 E-value=67 Score=29.54 Aligned_cols=121 Identities=14% Similarity=0.091 Sum_probs=62.3
Q ss_pred HHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEeccCccccCCCCcccc-----Cccccc-----CCC
Q 015521 224 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHE-----PEYWKF-----GEA 293 (405)
Q Consensus 224 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~-----pe~~~f-----gd~ 293 (405)
.++.+....+.+|++.+|.|+.+.++.|...+... ..+. +|++.+.....++...|.. +..+.+ +..
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~-~~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF-ADPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARS 154 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhh-cCCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHh
Confidence 45566666689999999999999999988855433 2333 2332211111111111110 000000 000
Q ss_pred CCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCC--CeeecCCCc
Q 015521 294 GNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDDRRL 350 (405)
Q Consensus 294 ~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~~~~~~f 350 (405)
.......+.|++-++.++++..+---. .....||+.++.-+...+ +..+++...
T Consensus 155 ~~~~~~~~~g~~~~~rr~~~~~vgg~~---~~~~~ED~~l~~rl~~~G~~~~~~~~~~v 210 (232)
T cd06437 155 STGLFFNFNGTAGVWRKECIEDAGGWN---HDTLTEDLDLSYRAQLKGWKFVYLDDVVV 210 (232)
T ss_pred hcCCeEEeccchhhhhHHHHHHhCCCC---CCcchhhHHHHHHHHHCCCeEEEecccee
Confidence 011111235666678888887763111 123479999998886444 555544433
No 42
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=73.81 E-value=15 Score=37.51 Aligned_cols=90 Identities=13% Similarity=0.202 Sum_probs=55.6
Q ss_pred cchhHHHHHHHHHHHhccCcceEEEeCCceEeeHH---HHHHHHHhcCCCCCeEEEEeccCccccCCCCccc---cCccc
Q 015521 215 LELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIA---TLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYH---EPEYW 288 (405)
Q Consensus 215 ~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~---~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy---~pe~~ 288 (405)
..++.=.+.+++|+....++++++.+|||..+.++ -+.+.|......++++.-+-.+ +.+.+.. .|+.+
T Consensus 79 ~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~N-----dnG~~~~~~~~~~~l 153 (334)
T cd02514 79 YRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWN-----DNGKEHFVDDTPSLL 153 (334)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeec-----cCCcccccCCCcceE
Confidence 33333333477777665589999999999999998 4456666665556665322111 1111111 14444
Q ss_pred ccCCCCCCCCCCCCCCceeeCHHHHHHH
Q 015521 289 KFGEAGNRYFRHATGQLYAISKDLAAYI 316 (405)
Q Consensus 289 ~fgd~~~~Yp~y~~G~gYvLS~dla~~I 316 (405)
|+. .|+.|.|.++.+++-..+
T Consensus 154 yrs-------~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 154 YRT-------DFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred EEe-------cCCCchHHHHHHHHHHHh
Confidence 432 356799999999998887
No 43
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=73.37 E-value=93 Score=30.21 Aligned_cols=165 Identities=12% Similarity=0.090 Sum_probs=91.0
Q ss_pred CCcEEEEEEeecCCCCCChhHHHHHHHHhhcCCe-E-eccCCccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHH
Q 015521 172 EKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDF-M-RLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIA 249 (405)
Q Consensus 172 ~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DI-L-~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~ 249 (405)
...+.+++|=+.+.. .....|.+-.+.++-+ + ..+......+.+ .+.+-+.+....+|++..|.|+.+.++
T Consensus 32 ~~~~eiIvvd~~s~~---~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSSD---EFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCch---hHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 456777777665542 3345566666666655 2 222222122332 245555565699999999999999999
Q ss_pred HHHHHHH---hcCCCC-CeEEEE-ec-c--C--ccccCCCCcccc--CcccccCCCCCCCC-CCCCCCceeeCHHHHHHH
Q 015521 250 TLGQTLV---RHRSKP-RVYIGC-MK-S--G--PVLNQKGVRYHE--PEYWKFGEAGNRYF-RHATGQLYAISKDLAAYI 316 (405)
Q Consensus 250 ~L~~~L~---~~~~~~-~lYiG~-~~-~--g--pv~r~~~~Kwy~--pe~~~fgd~~~~Yp-~y~~G~gYvLS~dla~~I 316 (405)
.+...+. .....+ .++++. .. + + .........|.. -+... ....+.+. ....|++.+++++.-..|
T Consensus 105 ~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~i~r~~f~~i 183 (281)
T PF10111_consen 105 FIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFI-SGKNSLWEFIAFASSCFLINREDFLEI 183 (281)
T ss_pred HHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHh-hccccccccccccceEEEEEHHHHHHh
Confidence 9999888 333222 333322 21 1 1 011000001110 00000 00011111 233469999999998887
Q ss_pred HHhccccCCCCcchHHHHHHHhhCCCee
Q 015521 317 SINQHVLHKYANEDVSLGSWFIGLDVEH 344 (405)
Q Consensus 317 ~~~~~~l~~~~~EDV~vG~~l~~L~v~~ 344 (405)
----.....+..||.-++.=|...+...
T Consensus 184 GGfDE~f~G~G~ED~D~~~RL~~~~~~~ 211 (281)
T PF10111_consen 184 GGFDERFRGWGYEDIDFGYRLKKAGYKF 211 (281)
T ss_pred CCCCccccCCCcchHHHHHHHHHcCCcE
Confidence 6655566667899999998887666443
No 44
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=72.24 E-value=67 Score=32.15 Aligned_cols=135 Identities=8% Similarity=0.033 Sum_probs=69.5
Q ss_pred CcEEEEEEeecCCCCCChhHHHHHHHHhhcCC-eEeccCCccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHH
Q 015521 173 KGIIMRFVIGHSATSGGILDRAIEAEDRKHGD-FMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATL 251 (405)
Q Consensus 173 ~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~D-IL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L 251 (405)
..+.+++|-..|.+ .. ...+++-.+.+++ ++......++. |. .++..+....+.+|++.+|.|.-.+++.+
T Consensus 37 ~~~EIIvVDDgS~D--~T-~~il~~~~~~~~~~v~~i~~~~n~G----~~-~A~~~G~~~A~gd~vv~~DaD~q~~p~~i 108 (325)
T PRK10714 37 KEYEILLIDDGSSD--NS-AEMLVEAAQAPDSHIVAILLNRNYG----QH-SAIMAGFSHVTGDLIITLDADLQNPPEEI 108 (325)
T ss_pred CCEEEEEEeCCCCC--cH-HHHHHHHHhhcCCcEEEEEeCCCCC----HH-HHHHHHHHhCCCCEEEEECCCCCCCHHHH
Confidence 45788888766643 22 2223332333444 44333333332 11 12333444457899999999999999999
Q ss_pred HHHHHhcCCCCCeEEEEecc--CccccCCCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHH
Q 015521 252 GQTLVRHRSKPRVYIGCMKS--GPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISI 318 (405)
Q Consensus 252 ~~~L~~~~~~~~lYiG~~~~--gpv~r~~~~Kwy~pe~~~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~ 318 (405)
..+++.......+..|.... .+..+.-.++.+.--...+ .+..++.+.+| .-++++++++.+..
T Consensus 109 ~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~--~g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 109 PRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRT--TGKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHH--cCCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 88887764333444444321 2222221222211000001 12234433333 35899999999864
No 45
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=69.13 E-value=34 Score=33.60 Aligned_cols=137 Identities=12% Similarity=0.031 Sum_probs=74.0
Q ss_pred cCCeEeccCCccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeE-EEEe-c--cCcc---
Q 015521 202 HGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVY-IGCM-K--SGPV--- 274 (405)
Q Consensus 202 ~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lY-iG~~-~--~gpv--- 274 (405)
+.++..+...++.- ...=.-..+..|....+. |++-.++|+.+..+.|.++++.....+... .|.. . .++.
T Consensus 55 ~~~v~~i~~~~NlG-~agg~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLG-FAGGFNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCcc-chhhhhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 66777665444321 011011355556543222 999999999999999999998876544333 3332 1 1111
Q ss_pred ccCC-----CCcc-ccCcccccCC--CCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCC
Q 015521 275 LNQK-----GVRY-HEPEYWKFGE--AGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD 341 (405)
Q Consensus 275 ~r~~-----~~Kw-y~pe~~~fgd--~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~ 341 (405)
.... ...| +.+..-.-.+ +......++.|++.++++++.+.+---.. --.+..||+-++.=+...|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de-~~F~y~eD~D~~~R~~~~G 206 (305)
T COG1216 133 RRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDE-RFFIYYEDVDLCLRARKAG 206 (305)
T ss_pred eeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCCCc-ccceeehHHHHHHHHHHcC
Confidence 0000 0011 1111000000 00112225789999999999999876222 1123699999998776555
No 46
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=68.71 E-value=98 Score=31.40 Aligned_cols=164 Identities=15% Similarity=0.063 Sum_probs=93.5
Q ss_pred EEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHHHH
Q 015521 175 IIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQT 254 (405)
Q Consensus 175 v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~ 254 (405)
..+..|...+. +..-+.+.+-..++++.+.+.+. -.+...| ...+.++....+.++++..|-|+.+..+.|.+.
T Consensus 85 ~evivv~d~~~---d~~~~~~~~~~~~~~~~~~~~~~--~~~~~gK-~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~ 158 (439)
T COG1215 85 YEVIVVDDGST---DETYEILEELGAEYGPNFRVIYP--EKKNGGK-AGALNNGLKRAKGDVVVILDADTVPEPDALREL 158 (439)
T ss_pred ceEEEECCCCC---hhHHHHHHHHHhhcCcceEEEec--cccCccc-hHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHH
Confidence 56666665332 33445555556666544444322 0122222 346777777667999999999999999999999
Q ss_pred HHhcCCCCCe-EEEEec--cCccccCCCCccccCcc-------cccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccC
Q 015521 255 LVRHRSKPRV-YIGCMK--SGPVLNQKGVRYHEPEY-------WKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLH 324 (405)
Q Consensus 255 L~~~~~~~~l-YiG~~~--~gpv~r~~~~Kwy~pe~-------~~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~ 324 (405)
+......+.. +.|... .++.......+-..-++ +... ........+.|...++-+++++.+- ....
T Consensus 159 ~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~G~~~~~rr~aL~~~g---~~~~ 234 (439)
T COG1215 159 VSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAA-SKGGLISFLSGSSSAFRRSALEEVG---GWLE 234 (439)
T ss_pred HhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhh-hhcCCeEEEcceeeeEEHHHHHHhC---CCCC
Confidence 9887544433 233221 11000000000000000 0000 1123567789999999999999877 2223
Q ss_pred CCCcchHHHHHHHhhC--CCeeecCC
Q 015521 325 KYANEDVSLGSWFIGL--DVEHIDDR 348 (405)
Q Consensus 325 ~~~~EDV~vG~~l~~L--~v~~~~~~ 348 (405)
..--||..++..+... .+..+++.
T Consensus 235 ~~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 235 DTITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred CceeccHHHHHHHHHCCCeEEEeecc
Confidence 3346999999999644 45566554
No 47
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=68.50 E-value=40 Score=30.40 Aligned_cols=107 Identities=13% Similarity=0.042 Sum_probs=59.0
Q ss_pred HHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEec----c-CccccCCCCccccCcccccCCCCCCCCC
Q 015521 225 FATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMK----S-GPVLNQKGVRYHEPEYWKFGEAGNRYFR 299 (405)
Q Consensus 225 ~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~----~-gpv~r~~~~Kwy~pe~~~fgd~~~~Yp~ 299 (405)
++.+......+|++.+|+|..+..+.|..++....... ..+|... . +...+....++.... .....+
T Consensus 64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 135 (221)
T cd02522 64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGAFRLRFDDPGPRLRLLELGANLRS-------RLFGLP 135 (221)
T ss_pred HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEEEEeeecCCccchhhhhhccccee-------cccCCC
Confidence 34444545689999999999999988888766554333 3344421 1 111000000111110 001111
Q ss_pred CCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCe
Q 015521 300 HATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVE 343 (405)
Q Consensus 300 y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~ 343 (405)
.++.+.++++++...+-.-.... ..||.-++.=+...+-.
T Consensus 136 -~~~~~~~~r~~~~~~~G~fd~~~---~~ED~d~~~r~~~~G~~ 175 (221)
T cd02522 136 -YGDQGLFIRRELFEELGGFPELP---LMEDVELVRRLRRRGRP 175 (221)
T ss_pred -cCCceEEEEHHHHHHhCCCCccc---cccHHHHHHHHHhCCCE
Confidence 23567889999887764333222 68999888777655533
No 48
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=67.04 E-value=1e+02 Score=29.79 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=68.1
Q ss_pred chhHHHHHHHHHHHhc-cCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEeccCccccCCCC---ccc-------c
Q 015521 216 ELSAKTKIYFATAVSL-WDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGV---RYH-------E 284 (405)
Q Consensus 216 nLt~Kt~~~~~wa~~~-~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~---Kwy-------~ 284 (405)
|.-.|+-..-...... .+.+|++-.|.|+.+.++.|..++......|+ +|-+.......+..+ ++. .
T Consensus 77 ~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~~n~~~~~~~~~~~~~~~~~ 154 (254)
T cd04191 77 NTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKLIGAETLFARLQQFANRLYG 154 (254)
T ss_pred CCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCceeECCCCHHHHHHHHHHHHHH
Confidence 4445554333322222 47899999999999999999999987643444 233321111111111 110 0
Q ss_pred C------cccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhcc-----cc-CCCCcchHHHHHHHhhCC--Ceeec
Q 015521 285 P------EYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQH-----VL-HKYANEDVSLGSWFIGLD--VEHID 346 (405)
Q Consensus 285 p------e~~~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~-----~l-~~~~~EDV~vG~~l~~L~--v~~~~ 346 (405)
| ..|. ..-.+|.|...++.++.+..+..... -. ...-.||..+|..+...| +...+
T Consensus 155 ~~~~~~~~~~~------~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~ 224 (254)
T cd04191 155 PVFGRGLAAWQ------GGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAP 224 (254)
T ss_pred HHHHHHHHHhc------CCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEcc
Confidence 0 0011 11235679999999998877543211 11 223579999999886555 44433
No 49
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=65.23 E-value=1.3e+02 Score=28.71 Aligned_cols=126 Identities=10% Similarity=-0.040 Sum_probs=61.8
Q ss_pred HHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCC-Ce-EEEEec-c-CccccCC---CCccccCcccccCCC-CC
Q 015521 224 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKP-RV-YIGCMK-S-GPVLNQK---GVRYHEPEYWKFGEA-GN 295 (405)
Q Consensus 224 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~-~l-YiG~~~-~-gpv~r~~---~~Kwy~pe~~~fgd~-~~ 295 (405)
++++|.+ .+++|++..|||+.+..+.|..++......+ .+ .+|... . ......+ ...+..+. ....+. ..
T Consensus 65 Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 142 (281)
T TIGR01556 65 GLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQ-ISLDGLTTP 142 (281)
T ss_pred HHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceee-ecccccCCc
Confidence 5566654 3789999999999999888888776553222 22 223211 1 0000000 00000000 000000 00
Q ss_pred CCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHh--hCCCeeecCCCccc
Q 015521 296 RYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHIDDRRLCC 352 (405)
Q Consensus 296 ~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~~~~~~f~~ 352 (405)
.-..++.++|.++++++++.+---...+ .+..||+-+..=+. |..+-.+++..+.+
T Consensus 143 ~~~~~~~~sg~li~~~~~~~iG~fde~~-fi~~~D~e~~~R~~~~G~~i~~~~~~~~~H 200 (281)
T TIGR01556 143 QKTSFLISSGCLITREVYQRLGMMDEEL-FIDHVDTEWSLRAQNYGIPLYIDPDIVLEH 200 (281)
T ss_pred eeccEEEcCcceeeHHHHHHhCCccHhh-cccchHHHHHHHHHHCCCEEEEeCCEEEEE
Confidence 1112344556689999998875322222 13468887765554 44444444434433
No 50
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=64.87 E-value=62 Score=28.13 Aligned_cols=136 Identities=9% Similarity=-0.022 Sum_probs=70.4
Q ss_pred cEEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHHH
Q 015521 174 GIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 253 (405)
Q Consensus 174 ~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 253 (405)
...++.+-..+. +.....+..-..++..+..+...+... .-..+..+......+|++..|+|..+.++.|..
T Consensus 28 ~~eiivvd~~s~---d~~~~~~~~~~~~~~~~~~~~~~~n~G-----~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~ 99 (185)
T cd04179 28 DYEIIVVDDGST---DGTAEIARELAARVPRVRVIRLSRNFG-----KGAAVRAGFKAARGDIVVTMDADLQHPPEDIPK 99 (185)
T ss_pred CEEEEEEcCCCC---CChHHHHHHHHHhCCCeEEEEccCCCC-----ccHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 445555554443 233444554455566654454444332 113455555555669999999999999999988
Q ss_pred HHHh-cCCCCCeEEEEecc-CccccCC-CCccccCc-ccccCCCCCCCCCCCCCCceeeCHHHHHHHH
Q 015521 254 TLVR-HRSKPRVYIGCMKS-GPVLNQK-GVRYHEPE-YWKFGEAGNRYFRHATGQLYAISKDLAAYIS 317 (405)
Q Consensus 254 ~L~~-~~~~~~lYiG~~~~-gpv~r~~-~~Kwy~pe-~~~fgd~~~~Yp~y~~G~gYvLS~dla~~I~ 317 (405)
++.. ......+..|.... ......+ ..++.... .+.+..-...-.....|+.+++++++++.+.
T Consensus 100 l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 100 LLEKLLEGGADVVIGSRFVRGGGAGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHHhccCCcEEEEEeecCCCcccchHHHHHHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHHH
Confidence 8886 33445565565321 1000000 00000000 0000000011123356888899999999985
No 51
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=58.53 E-value=1.4e+02 Score=33.42 Aligned_cols=136 Identities=17% Similarity=0.173 Sum_probs=74.9
Q ss_pred chhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeE-EEEec---c-CccccCCCCccccC-cc-c
Q 015521 216 ELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVY-IGCMK---S-GPVLNQKGVRYHEP-EY-W 288 (405)
Q Consensus 216 nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lY-iG~~~---~-gpv~r~~~~Kwy~p-e~-~ 288 (405)
|...|.- .++.+.+..+.+|++..|.|+.+..+.|.+.+......+++- +++.. + .+..++-......| +. .
T Consensus 212 n~~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~ 290 (713)
T TIGR03030 212 NVHAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENEL 290 (713)
T ss_pred CCCCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHH
Confidence 3345543 467777777899999999999999999988887653344431 22111 1 11111100000011 00 0
Q ss_pred ccC--CCCC--CCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCC--CeeecCCCcccCCC
Q 015521 289 KFG--EAGN--RYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDDRRLCCGTP 355 (405)
Q Consensus 289 ~fg--d~~~--~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~~~~~~f~~~~~ 355 (405)
+++ .++. .-..++.|++.++.++++..+---. ...-.||..++.-+...| +...++.......|
T Consensus 291 f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~---~~~vtED~~l~~rL~~~G~~~~y~~~~~~~g~~p 360 (713)
T TIGR03030 291 FYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIA---GETVTEDAETALKLHRRGWNSAYLDRPLIAGLAP 360 (713)
T ss_pred HHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCC---CCCcCcHHHHHHHHHHcCCeEEEeccccccccCC
Confidence 000 0010 0123567999999999998763211 122379999999886554 55666665554444
No 52
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=56.61 E-value=1.5e+02 Score=26.62 Aligned_cols=91 Identities=12% Similarity=0.051 Sum_probs=50.8
Q ss_pred HHHHHhccCcceEEEeCCceEeeHHHHHHHHHh-cCCCCCeEEEEec-cCccccCCCCccc---cC--cccccCCCCCCC
Q 015521 225 FATAVSLWDADFYVKVDDDVHVNIATLGQTLVR-HRSKPRVYIGCMK-SGPVLNQKGVRYH---EP--EYWKFGEAGNRY 297 (405)
Q Consensus 225 ~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~-~~~~~~lYiG~~~-~gpv~r~~~~Kwy---~p--e~~~fgd~~~~Y 297 (405)
++.+.+....+|++.+|+|..+.++.|..++.. ..+...+..|... ..... ... .++ .+ ..+........-
T Consensus 70 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~ 147 (224)
T cd06442 70 YIEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGW-GLKRKLISRGANLLARLLLGRK 147 (224)
T ss_pred HHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCC-cHHHHHHHHHHHHHHHHHcCCC
Confidence 333444345699999999999999988888886 3445566656432 11111 000 000 00 000000000112
Q ss_pred CCCCCCCceeeCHHHHHHHH
Q 015521 298 FRHATGQLYAISKDLAAYIS 317 (405)
Q Consensus 298 p~y~~G~gYvLS~dla~~I~ 317 (405)
.+.++|++.++++++++.+-
T Consensus 148 ~~~~~~~~~~~~r~~~~~ig 167 (224)
T cd06442 148 VSDPTSGFRAYRREVLEKLI 167 (224)
T ss_pred CCCCCCccchhhHHHHHHHh
Confidence 34577888899999999987
No 53
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=56.49 E-value=1.4e+02 Score=31.62 Aligned_cols=86 Identities=10% Similarity=0.155 Sum_probs=43.0
Q ss_pred HHHHHHHh----ccCcceEEEeCCceEeeHHHHHHHHHhc---CCCCCeEEEEe-c-cCc-cccCCCCccccCcccccCC
Q 015521 223 IYFATAVS----LWDADFYVKVDDDVHVNIATLGQTLVRH---RSKPRVYIGCM-K-SGP-VLNQKGVRYHEPEYWKFGE 292 (405)
Q Consensus 223 ~~~~wa~~----~~~a~fvlKvDDDvfVn~~~L~~~L~~~---~~~~~lYiG~~-~-~gp-v~r~~~~Kwy~pe~~~fgd 292 (405)
.-++||.. ..+++.++.+.||.-|-++-+.-+.... ...+.+|+-.- + .|. ...+. -.|+..|..|
T Consensus 177 ~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawNdnG~~~~~~~----~~~~~lyRsd 252 (434)
T PF03071_consen 177 RHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWNDNGKEHFVDD----SRPSLLYRSD 252 (434)
T ss_dssp HHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES--TT-BGGGS-T----T-TT-EEEES
T ss_pred HHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEccccCCccccccC----CCccceEecc
Confidence 34455543 3578999999999999987665443332 22456663321 1 121 11111 0133344221
Q ss_pred CCCCCCCCCCCCceeeCHHHHHHHHHh
Q 015521 293 AGNRYFRHATGQLYAISKDLAAYISIN 319 (405)
Q Consensus 293 ~~~~Yp~y~~G~gYvLS~dla~~I~~~ 319 (405)
|..|-|++|++++-..|...
T Consensus 253 -------ffpglGWml~r~~w~el~~~ 272 (434)
T PF03071_consen 253 -------FFPGLGWMLTRELWDELEPK 272 (434)
T ss_dssp -------S---SSEEEEHHHHHHHGGG
T ss_pred -------cCCchHHHhhHHHHHhhccc
Confidence 34589999999999876543
No 54
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=56.07 E-value=17 Score=34.35 Aligned_cols=114 Identities=15% Similarity=0.091 Sum_probs=61.5
Q ss_pred ccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCe--EEEEecc-Cc---cc-cCCCCccccCcc-cccCCCCCCCCCCCC
Q 015521 231 LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRV--YIGCMKS-GP---VL-NQKGVRYHEPEY-WKFGEAGNRYFRHAT 302 (405)
Q Consensus 231 ~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~l--YiG~~~~-gp---v~-r~~~~Kwy~pe~-~~fgd~~~~Yp~y~~ 302 (405)
..+.+|++.+|.|+.+..+.|..++......|++ ..|.... ++ .+ +-..-.|..... .......-.+...+.
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~ 150 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLP 150 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECC
Confidence 3489999999999999999988888766434443 2233211 10 00 000000100000 000001113455678
Q ss_pred CCceeeCHHHHHHHHHhcc----------cc-------CCCCcchHHHHHHHhhCC--Cee
Q 015521 303 GQLYAISKDLAAYISINQH----------VL-------HKYANEDVSLGSWFIGLD--VEH 344 (405)
Q Consensus 303 G~gYvLS~dla~~I~~~~~----------~l-------~~~~~EDV~vG~~l~~L~--v~~ 344 (405)
|+++++.+++++.+..... .+ .....||..++..+...+ +..
T Consensus 151 G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~~ 211 (244)
T cd04190 151 GCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKY 211 (244)
T ss_pred CceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccEE
Confidence 9999999998876532211 00 012479999998885444 545
No 55
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=48.57 E-value=1.7e+02 Score=26.27 Aligned_cols=89 Identities=13% Similarity=0.004 Sum_probs=52.3
Q ss_pred CcEEEEEEeecCCCCCChhHHHHHHHHhhcCCe-EeccCCccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHH
Q 015521 173 KGIIMRFVIGHSATSGGILDRAIEAEDRKHGDF-MRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATL 251 (405)
Q Consensus 173 ~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DI-L~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L 251 (405)
..+.++.|-+.|.+ .....+++..++++.. ..+...... ... .+++.+.+....+|++.+|+|..+.++.|
T Consensus 29 ~~~eiivvdd~S~D---~t~~~~~~~~~~~~~~i~~i~~~~n~-G~~----~a~~~g~~~a~gd~i~~ld~D~~~~~~~l 100 (211)
T cd04188 29 FSYEIIVVDDGSKD---GTAEVARKLARKNPALIRVLTLPKNR-GKG----GAVRAGMLAARGDYILFADADLATPFEEL 100 (211)
T ss_pred CCEEEEEEeCCCCC---chHHHHHHHHHhCCCcEEEEEcccCC-CcH----HHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence 35677766665542 2334455555556654 223332221 111 23334444446799999999999999999
Q ss_pred HHHHHh-cCCCCCeEEEEe
Q 015521 252 GQTLVR-HRSKPRVYIGCM 269 (405)
Q Consensus 252 ~~~L~~-~~~~~~lYiG~~ 269 (405)
..++.. ......+.+|..
T Consensus 101 ~~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 101 EKLEEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHHHHhccCCcEEEEEe
Confidence 988886 333445667763
No 56
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=48.00 E-value=3.2e+02 Score=28.39 Aligned_cols=127 Identities=10% Similarity=0.131 Sum_probs=67.8
Q ss_pred HHHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeE--EEEeccCc-cccCCCCc--cccCc--------ccc
Q 015521 223 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVY--IGCMKSGP-VLNQKGVR--YHEPE--------YWK 289 (405)
Q Consensus 223 ~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lY--iG~~~~gp-v~r~~~~K--wy~pe--------~~~ 289 (405)
.+++++.+..+.+|++..|+|..+..+.|.+.+......+.+- .|.....+ ........ +...+ .+.
T Consensus 121 ~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l 200 (439)
T TIGR03111 121 KALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFL 200 (439)
T ss_pred HHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHH
Confidence 3567777767899999999999999999998887764334432 23332111 10000000 01110 000
Q ss_pred cCC---CCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHh---hCCCeeecCCCccc
Q 015521 290 FGE---AGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFI---GLDVEHIDDRRLCC 352 (405)
Q Consensus 290 fgd---~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~---~L~v~~~~~~~f~~ 352 (405)
.+. .....+..++|++.++.++++..+---. ...-.||..++.-+. +-.+...++..+..
T Consensus 201 ~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~---~~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~~ 266 (439)
T TIGR03111 201 AGRNFESQVNSLFTLSGAFSAFRRETILKTQLYN---SETVGEDTDMTFQIRELLDGKVYLCENAIFYV 266 (439)
T ss_pred hhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCC---CCCcCccHHHHHHHHHhcCCeEEECCCCEEEE
Confidence 000 0001122357888888888877643211 122489999986553 33444445555544
No 57
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=47.92 E-value=1.4e+02 Score=23.85 Aligned_cols=82 Identities=12% Similarity=0.056 Sum_probs=49.4
Q ss_pred HHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCe-EEEEeccCccccCCCCccccCcccccCCCCCCCCCCCC
Q 015521 224 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRV-YIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHAT 302 (405)
Q Consensus 224 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~l-YiG~~~~gpv~r~~~~Kwy~pe~~~fgd~~~~Yp~y~~ 302 (405)
.+..+....+.+|++-+|+|..+.++.+...+......+.. .++..
T Consensus 68 ~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------------------------- 114 (156)
T cd00761 68 ARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP--------------------------------- 114 (156)
T ss_pred HHHHHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc---------------------------------
Confidence 44445554489999999999999998888874443222221 11110
Q ss_pred CCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhC
Q 015521 303 GQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGL 340 (405)
Q Consensus 303 G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L 340 (405)
++++++++..+.+......... ..||..++..+...
T Consensus 115 -~~~~~~~~~~~~~~~~~~~~~~-~~ed~~~~~~~~~~ 150 (156)
T cd00761 115 -GNLLFRRELLEEIGGFDEALLS-GEEDDDFLLRLLRG 150 (156)
T ss_pred -chheeeHHHHHHhCCcchHhcC-CcchHHHHHHHHhh
Confidence 6677888877766543322221 26777777666543
No 58
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=47.11 E-value=2.4e+02 Score=26.22 Aligned_cols=155 Identities=13% Similarity=0.098 Sum_probs=79.2
Q ss_pred cEEEEEEeecCCCCCChhHHHHHHHHhhcCC--eEeccCCccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHH
Q 015521 174 GIIMRFVIGHSATSGGILDRAIEAEDRKHGD--FMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATL 251 (405)
Q Consensus 174 ~v~v~FviG~s~~~~~~~~~~L~~E~~~~~D--IL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L 251 (405)
.+.+++|-..|.+ ...+.+.+-.++|++ +......... ... .+++.+....+.+|++.+|+|..++++.|
T Consensus 40 ~~eiivvDdgS~D---~t~~i~~~~~~~~~~~~v~~~~~~~n~-G~~----~a~n~g~~~a~g~~i~~lD~D~~~~~~~l 111 (243)
T PLN02726 40 DFEIIVVDDGSPD---GTQDVVKQLQKVYGEDRILLRPRPGKL-GLG----TAYIHGLKHASGDFVVIMDADLSHHPKYL 111 (243)
T ss_pred CeEEEEEeCCCCC---CHHHHHHHHHHhcCCCcEEEEecCCCC-CHH----HHHHHHHHHcCCCEEEEEcCCCCCCHHHH
Confidence 5677777665542 233334433444543 2222222211 111 24444544457899999999999999998
Q ss_pred HHHHHhcCC-CCCeEEEEec--cCccccCCCCccc---cCc------ccccCCCCCCCCCCCCCCceeeCHHHHHHHHHh
Q 015521 252 GQTLVRHRS-KPRVYIGCMK--SGPVLNQKGVRYH---EPE------YWKFGEAGNRYFRHATGQLYAISKDLAAYISIN 319 (405)
Q Consensus 252 ~~~L~~~~~-~~~lYiG~~~--~gpv~r~~~~Kwy---~pe------~~~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~ 319 (405)
..++..... ...+..|... .+.. .+..|. .+. .+.++ ..-...+|++.++++++++.+...
T Consensus 112 ~~l~~~~~~~~~~~v~g~r~~~~~~~---~~~~~~r~~~~~~~~~~~~~~~~----~~~~d~~g~~~~~rr~~~~~i~~~ 184 (243)
T PLN02726 112 PSFIKKQRETGADIVTGTRYVKGGGV---HGWDLRRKLTSRGANVLAQTLLW----PGVSDLTGSFRLYKRSALEDLVSS 184 (243)
T ss_pred HHHHHHHHhcCCcEEEEccccCCCCc---CCccHHHHHHHHHHHHHHHHHhC----CCCCcCCCcccceeHHHHHHHHhh
Confidence 888876532 3456566532 1110 000111 100 01111 111235788889999999998653
Q ss_pred ccccCCCCcchHHHHHHH--hhCCCeee
Q 015521 320 QHVLHKYANEDVSLGSWF--IGLDVEHI 345 (405)
Q Consensus 320 ~~~l~~~~~EDV~vG~~l--~~L~v~~~ 345 (405)
.... .| ..|+-+...+ .|..+..+
T Consensus 185 ~~~~-~~-~~~~el~~~~~~~g~~i~~v 210 (243)
T PLN02726 185 VVSK-GY-VFQMEIIVRASRKGYRIEEV 210 (243)
T ss_pred ccCC-Cc-EEehHHHHHHHHcCCcEEEe
Confidence 3221 22 2345554444 45555554
No 59
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=42.63 E-value=96 Score=31.03 Aligned_cols=81 Identities=11% Similarity=0.078 Sum_probs=59.9
Q ss_pred cCCcEEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCc--cccchhHHHHHHHHHHHhccCcceEEEeCCceEeeH
Q 015521 171 EEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVE--GYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNI 248 (405)
Q Consensus 171 ~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~D--sY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~ 248 (405)
...++.+.|+-|.+ ..++.|..=.....-++-+|+.+ .+..-+.-...+..|+.+.++.++++..|-|+|...
T Consensus 35 s~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~ 109 (346)
T COG4092 35 SSDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSS 109 (346)
T ss_pred ccccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccH
Confidence 35567777777765 35677777777777777777543 444334444567788888789999999999999999
Q ss_pred HHHHHHHH
Q 015521 249 ATLGQTLV 256 (405)
Q Consensus 249 ~~L~~~L~ 256 (405)
++..+.|.
T Consensus 110 dnF~k~l~ 117 (346)
T COG4092 110 DNFAKMLS 117 (346)
T ss_pred HHHHHHHH
Confidence 99999883
No 60
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=41.84 E-value=2.9e+02 Score=25.57 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=66.5
Q ss_pred HHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCC-CCe-EEEE-eccCccccCCCCccccCcccc-cC-----CCC
Q 015521 224 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSK-PRV-YIGC-MKSGPVLNQKGVRYHEPEYWK-FG-----EAG 294 (405)
Q Consensus 224 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~-~~l-YiG~-~~~gpv~r~~~~Kwy~pe~~~-fg-----d~~ 294 (405)
.++.+.+....+|++.+|+|+.+.++.|.+.+...... +.+ ++|. +...........+.+..+++. ++ -..
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLAR 154 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566665678999999999999999999888776432 333 2222 111000000000111000000 00 000
Q ss_pred CCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCC--CeeecC
Q 015521 295 NRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDD 347 (405)
Q Consensus 295 ~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~~~~ 347 (405)
...+..++|++.++++++++.+---.. ....||..++.=+...+ +..++.
T Consensus 155 ~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r~~~~~~ 206 (241)
T cd06427 155 LGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYRTGVLNS 206 (241)
T ss_pred cCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCceEEEecc
Confidence 123334678889999999988743222 12479999988775544 444433
No 61
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=41.55 E-value=3.3e+02 Score=30.67 Aligned_cols=199 Identities=14% Similarity=0.054 Sum_probs=101.4
Q ss_pred CCCeeEEEEEECCCCCHH-HHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCChh--HHHHHHHHhhcC---CeE
Q 015521 133 KRRYLMVVGINTAFSSRK-RRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGIL--DRAIEAEDRKHG---DFM 206 (405)
Q Consensus 133 ~~~~~llI~V~Sa~~~~~-rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~--~~~L~~E~~~~~---DIL 206 (405)
.....+.|.|.+--...+ -+..|+.+..+-.. ......+.+ ||+..+.+++-.. ..++.+=.++|+ .|.
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~ 195 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIF 195 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEE
Confidence 344566666666544443 35778888875421 111234555 8887654321111 111222233343 333
Q ss_pred eccCCccccchhHHHHHHHHHHHh-ccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEeccCccccCCCC---cc
Q 015521 207 RLDHVEGYLELSAKTKIYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGV---RY 282 (405)
Q Consensus 207 ~ld~~DsY~nLt~Kt~~~~~wa~~-~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~---Kw 282 (405)
... .-.|.-.|.-..-.+... -.+++|++-.|-|+.+..+.|.+++......|+ +|-+-..+...+..+ ++
T Consensus 196 yr~---R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~slfaR~ 270 (691)
T PRK05454 196 YRR---RRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADTLFARL 270 (691)
T ss_pred EEE---CCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCCHHHHH
Confidence 322 223444566544444433 247799999999999999999999976543444 344432222212111 00
Q ss_pred -------ccC------cccccCCCCCCCCCCCCCCceeeCHHHHHHHHHh------ccccCCCCcchHHHHHHHhhC--C
Q 015521 283 -------HEP------EYWKFGEAGNRYFRHATGQLYAISKDLAAYISIN------QHVLHKYANEDVSLGSWFIGL--D 341 (405)
Q Consensus 283 -------y~p------e~~~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~------~~~l~~~~~EDV~vG~~l~~L--~ 341 (405)
|-| .+|..+ .+ ...|...|+.++....+.-- .+.-...--||...|..+... .
T Consensus 271 qqf~~~~y~~~~~~G~~~w~~~-~g-----~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~Gyr 344 (691)
T PRK05454 271 QQFATRVYGPLFAAGLAWWQGG-EG-----NYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWG 344 (691)
T ss_pred HHHHHHHHHHHHHhhhhhhccC-cc-----ccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCE
Confidence 000 012101 01 12466678888876654310 011123357899999998644 4
Q ss_pred CeeecC
Q 015521 342 VEHIDD 347 (405)
Q Consensus 342 v~~~~~ 347 (405)
|..+++
T Consensus 345 V~~~pd 350 (691)
T PRK05454 345 VWLAPD 350 (691)
T ss_pred EEEcCc
Confidence 666666
No 62
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=40.89 E-value=3.7e+02 Score=26.71 Aligned_cols=108 Identities=16% Similarity=0.062 Sum_probs=62.6
Q ss_pred HHHHHHhhhhhhhhc-ccCCcEEEEEEeecCCCCCChhHHHHHHHH----------hhcCCeEec--cCCcc-------c
Q 015521 155 VRATWMLQGEKRKRL-EEEKGIIMRFVIGHSATSGGILDRAIEAED----------RKHGDFMRL--DHVEG-------Y 214 (405)
Q Consensus 155 IReTW~~~~~~l~~l-~~~~~v~v~FviG~s~~~~~~~~~~L~~E~----------~~~~DIL~l--d~~Ds-------Y 214 (405)
+-+-|-.-. +| .+...|.+-|+++.+.. ++.....|+++. ..|+.|.++ ||.+. .
T Consensus 40 l~~y~~~L~----~L~YP~~lIsLgfLv~d~~e-~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~R 114 (269)
T PF03452_consen 40 LPDYFDNLL----SLTYPHELISLGFLVSDSSE-FDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSER 114 (269)
T ss_pred HHHHHHHHH----hCCCCchheEEEEEcCCCch-hHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhc
Confidence 555555543 22 23567889999999873 233444455433 345555544 55431 1
Q ss_pred c-----chhHHHHHHH-HHHHh---ccCcceEEEeCCceEeeHHHHHHHHHhcCC---CCCeEEE
Q 015521 215 L-----ELSAKTKIYF-ATAVS---LWDADFYVKVDDDVHVNIATLGQTLVRHRS---KPRVYIG 267 (405)
Q Consensus 215 ~-----nLt~Kt~~~~-~wa~~---~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~---~~~lYiG 267 (405)
+ ..-.+.++-. +|+.. .+..+|++-.|-|+.-.++.|++.|..+.. -|++|.+
T Consensus 115 H~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~kdIivPn~~~~ 179 (269)
T PF03452_consen 115 HAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHDKDIIVPNCWRR 179 (269)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHhCCCCEEccceeec
Confidence 1 1223333211 23321 358999999999999999999999988742 2445544
No 63
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=39.65 E-value=37 Score=21.11 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=15.5
Q ss_pred HHhhhhhHHHHHHHHHHHH
Q 015521 91 IQTLDKTISNLEMELAAAR 109 (405)
Q Consensus 91 ~~~~~~~~~~le~~l~~~~ 109 (405)
+..+..+|++||.+|+..+
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4567889999999998765
No 64
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=39.23 E-value=2.7e+02 Score=24.47 Aligned_cols=89 Identities=16% Similarity=0.094 Sum_probs=51.5
Q ss_pred HHHHHHHh-ccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEeccCccccCCCCccccC----cc----cc--cC
Q 015521 223 IYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEP----EY----WK--FG 291 (405)
Q Consensus 223 ~~~~wa~~-~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~p----e~----~~--fg 291 (405)
.+++++.. ..+.+|++.+|.|+.+.++.|..++......+.+..|..... ++...|... ++ +. .+
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSK----NPDDSWITRLYAFAFLVFNRLRPLG 145 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeee----CCccCHHHHHHHHHHHHHHHHHHHH
Confidence 34444432 246899999999999999888888877654455666654311 111122100 00 00 00
Q ss_pred CCCCCCCCCCCCCceeeCHHHHHH
Q 015521 292 EAGNRYFRHATGQLYAISKDLAAY 315 (405)
Q Consensus 292 d~~~~Yp~y~~G~gYvLS~dla~~ 315 (405)
...-.-+.++.|+++++++++++.
T Consensus 146 ~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 146 RSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHcCCCeeecCchhhhHHHHHHh
Confidence 000022335789999999999987
No 65
>PHA01631 hypothetical protein
Probab=38.18 E-value=72 Score=29.45 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=52.5
Q ss_pred cCCeEeccCCccccchhHHHHHHHHHHHh---ccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEeccCccccCC
Q 015521 202 HGDFMRLDHVEGYLELSAKTKIYFATAVS---LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQK 278 (405)
Q Consensus 202 ~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~---~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~ 278 (405)
+.+|+...--..++.+. ....+..+.+ .-+-|.++.+|.|++|+.-. .. .+++.++.=|.. -+
T Consensus 39 ~~~Ii~~~t~~e~Rr~R--IAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~CiP---A~--- 104 (176)
T PHA01631 39 QEKIIWIMTNTEIRWLR--IAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCYW---LY--- 104 (176)
T ss_pred CCceEEecccchhHHHH--HHHHHHHHHHhhccCCccEEEEeccceEecCcc--cc----ccCCCccceeee---ee---
Confidence 55666654222222222 2223334433 35778888999999998542 11 123344444431 11
Q ss_pred CCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHHh
Q 015521 279 GVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISIN 319 (405)
Q Consensus 279 ~~Kwy~pe~~~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~ 319 (405)
.| |.+.+-+||.|.-|++.+..+.++...
T Consensus 105 -~k-----------p~~~v~~FC~sTNf~~pr~~l~~l~~v 133 (176)
T PHA01631 105 -YD-----------WANEIRPFCSGTNYIFRKSLLPYLEYT 133 (176)
T ss_pred -ec-----------CCCcEEEEEccccEEeeHHHhHHHHHH
Confidence 01 233556899999999999999988653
No 66
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=38.16 E-value=3e+02 Score=24.80 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=32.2
Q ss_pred HHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEE
Q 015521 224 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGC 268 (405)
Q Consensus 224 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~ 268 (405)
+.+.+.+....+|++.+|+|..+.++.|...+......+...+|+
T Consensus 75 a~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 75 AKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 344555556889999999999999998887665554334445565
No 67
>PRK10018 putative glycosyl transferase; Provisional
Probab=28.64 E-value=5.6e+02 Score=25.02 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=27.6
Q ss_pred HHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhc
Q 015521 224 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRH 258 (405)
Q Consensus 224 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~ 258 (405)
..+.+......+|++..|+|..+.++.|..++...
T Consensus 76 a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~ 110 (279)
T PRK10018 76 VRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHK 110 (279)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHH
Confidence 34445555689999999999999999888777654
No 68
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=26.96 E-value=92 Score=32.49 Aligned_cols=28 Identities=11% Similarity=0.045 Sum_probs=23.9
Q ss_pred cCcceEEEeCCceEeeHHHHHHHHHhcC
Q 015521 232 WDADFYVKVDDDVHVNIATLGQTLVRHR 259 (405)
Q Consensus 232 ~~a~fvlKvDDDvfVn~~~L~~~L~~~~ 259 (405)
-.++|++..|||+++.++.+.++-....
T Consensus 169 a~ydlvlisDsgI~m~pdtildm~t~M~ 196 (431)
T KOG2547|consen 169 AKYDLVLISDSGIFMKPDTILDMATTMM 196 (431)
T ss_pred hcCCEEEEecCCeeecCchHHHHHHhhh
Confidence 3567999999999999999998876653
No 69
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=22.66 E-value=89 Score=30.26 Aligned_cols=101 Identities=16% Similarity=0.196 Sum_probs=52.7
Q ss_pred ccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEeccCccccCCCCcc-ccCcccccCCCCCCCCCCCCCCceeeC
Q 015521 231 LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRY-HEPEYWKFGEAGNRYFRHATGQLYAIS 309 (405)
Q Consensus 231 ~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kw-y~pe~~~fgd~~~~Yp~y~~G~gYvLS 309 (405)
....+-++-+|||+.++.+.|......-+..|.-.+|.....-.....+.+| |..+ | .+.|- -...++-++.
T Consensus 73 ~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~~~-~-----~~~yS-mvLt~aaf~h 145 (247)
T PF09258_consen 73 EIETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYTSE-W-----SNEYS-MVLTGAAFYH 145 (247)
T ss_dssp T--SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE-S-S-----S--BS-EE-TTEEEEE
T ss_pred ccCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccccccccC-C-----CCcch-hhhhhhHhhc
Confidence 3478899999999999999998877776666655678653111111134444 2221 1 12332 2344555566
Q ss_pred HHHHHHHHHhcc-----cc-CCCCcchHHHHHHHh
Q 015521 310 KDLAAYISINQH-----VL-HKYANEDVSLGSWFI 338 (405)
Q Consensus 310 ~dla~~I~~~~~-----~l-~~~~~EDV~vG~~l~ 338 (405)
++.........+ .+ ....=||+.+-....
T Consensus 146 ~~yl~~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs 180 (247)
T PF09258_consen 146 RYYLELYTHWLPASIREYVDEHFNCEDIAMNFLVS 180 (247)
T ss_dssp THHHHHHHT-S-HHHHHHHHHHTS-HHHHHHHHHH
T ss_pred chHHHHHhcCcHHHHHHHHhccCCHHHHHHHHHHH
Confidence 666554432111 11 224679999877664
No 70
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=22.56 E-value=4.4e+02 Score=27.87 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCC-----CC-hhHHHHHHH---HhhcCCeEeccC---CccccchhHH
Q 015521 153 DSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATS-----GG-ILDRAIEAE---DRKHGDFMRLDH---VEGYLELSAK 220 (405)
Q Consensus 153 ~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~-----~~-~~~~~L~~E---~~~~~DIL~ld~---~DsY~nLt~K 220 (405)
++-|+.|........... ...-+|+.|.|..+.+ ++ .+++.+++= ++.||=-+..+. .+.......|
T Consensus 106 d~~R~~wl~~~p~~~~~~-~g~prVviVT~sdp~~c~n~~gd~yLlks~kNK~dYAr~HGY~~fyn~~~ld~~~p~~WaK 184 (429)
T PLN03182 106 DEQRRRWLRKNPGFPSFV-NGKPRVLLVTGSQPKPCENPVGDHYLLKSLKNKIDYCRLHGIEIFYNMAHLDAEMAGFWAK 184 (429)
T ss_pred HHHHHHHHHhCCCCCCcc-CCCCCEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHHHHhCCEEEeehhhcCcCCCcchhH
Confidence 455677887542111111 1334788888877642 11 334444331 455664444442 2234456788
Q ss_pred HHHHHHHHHhccCcceEEEeCCceEe
Q 015521 221 TKIYFATAVSLWDADFYVKVDDDVHV 246 (405)
Q Consensus 221 t~~~~~wa~~~~~a~fvlKvDDDvfV 246 (405)
.-+..+...++++++|+.=+|.|+++
T Consensus 185 lpaLR~aM~~~PeaEWiWWLDsDALI 210 (429)
T PLN03182 185 LPLLRKLMLAHPEVEWIWWMDSDALF 210 (429)
T ss_pred HHHHHHHHHHCCCceEEEEecCCcee
Confidence 87777766778999999999999887
No 71
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=21.57 E-value=5.8e+02 Score=25.60 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=56.9
Q ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCC-CCChhHHHHHHHHhh---cCCeEec
Q 015521 133 KRRYLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSAT-SGGILDRAIEAEDRK---HGDFMRL 208 (405)
Q Consensus 133 ~~~~~llI~V~Sa~~~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~-~~~~~~~~L~~E~~~---~~DIL~l 208 (405)
+....|.|||.|.... +-+-+.+|=++--..+..-| ...+.|+-+++.+.. ..+.....|..+-.. -|-+..+
T Consensus 49 ~~~~~L~IGIpTV~R~--~~sYL~~TL~SLl~~ls~~E-r~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI 125 (297)
T PF04666_consen 49 RTGKKLCIGIPTVKRE--KESYLLDTLASLLDGLSPEE-RKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVI 125 (297)
T ss_pred CCCCeEEEEecccccC--CCchHHHHHHHHHHhCCHHH-hcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEE
Confidence 3344599999996533 34567777766543332222 334555444555432 111222222221111 1222222
Q ss_pred cCCcc-ccch--------------hHHHHHHHHHHH--h-c-cCcceEEEeCCceEeeHHHHHHHH
Q 015521 209 DHVEG-YLEL--------------SAKTKIYFATAV--S-L-WDADFYVKVDDDVHVNIATLGQTL 255 (405)
Q Consensus 209 d~~Ds-Y~nL--------------t~Kt~~~~~wa~--~-~-~~a~fvlKvDDDvfVn~~~L~~~L 255 (405)
+-..+ |..+ ...++.-+.||. . | ..++||+-..||+.....-+..+.
T Consensus 126 ~~p~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~~~~YyL~LEDDVia~~~f~~~i~ 191 (297)
T PF04666_consen 126 SPPPSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQNLGDYYLQLEDDVIAAPGFLSRIK 191 (297)
T ss_pred ecccccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHhcCCeEEEecCCeEechhHHHHHH
Confidence 22222 2111 122333333332 1 2 368899999999998876544443
No 72
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=21.51 E-value=1.2e+02 Score=19.91 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHHHHHHHHHhcc
Q 015521 15 VSQKWTFLLCLGCFCAGMLFTNR 37 (405)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (405)
++--|+.++.+|+|-..+-+-||
T Consensus 4 v~lgWaal~~~ftfSlalVVWGR 26 (29)
T PF03742_consen 4 VSLGWAALMVVFTFSLALVVWGR 26 (29)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHhccceeEEEec
Confidence 45569999999999999998887
Done!