Query 015521
Match_columns 405
No_of_seqs 261 out of 1195
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 14:04:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.9 2.9E-24 9.8E-29 209.1 15.1 195 134-355 11-217 (280)
2 1xhb_A Polypeptide N-acetylgal 93.2 2 6.8E-05 43.1 15.6 166 175-347 62-252 (472)
3 2d7i_A Polypeptide N-acetylgal 92.3 5.2 0.00018 41.6 17.7 163 175-344 145-329 (570)
4 1qg8_A Protein (spore coat pol 91.0 8.2 0.00028 34.4 16.2 117 223-347 78-208 (255)
5 2ffu_A Ppgalnact-2, polypeptid 91.0 6.4 0.00022 39.8 16.4 161 175-346 99-283 (501)
6 4fix_A UDP-galactofuranosyl tr 89.3 9.3 0.00032 40.7 16.5 117 223-341 258-403 (657)
7 3bcv_A Putative glycosyltransf 87.9 10 0.00036 33.3 13.6 165 174-348 34-220 (240)
8 2z86_A Chondroitin synthase; G 85.4 11 0.00038 38.9 14.1 126 224-350 165-327 (625)
9 4hg6_A Cellulose synthase subu 73.1 39 0.0013 36.6 13.8 132 219-354 225-369 (802)
10 2z86_A Chondroitin synthase; G 71.0 55 0.0019 33.6 13.9 156 173-346 403-565 (625)
11 2c0n_A A197; thermophil protei 48.5 1.3E+02 0.0044 27.3 10.2 132 194-337 16-158 (203)
12 1fo8_A Alpha-1,3-mannosyl-glyc 46.3 50 0.0017 32.2 7.7 88 222-317 88-178 (343)
13 2bo4_A Mannosylglycerate synth 34.4 79 0.0027 31.3 7.2 170 174-346 28-210 (397)
14 2lnd_A De novo designed protei 32.1 55 0.0019 25.7 4.3 70 142-229 31-103 (112)
15 2pnv_A Small conductance calci 24.9 58 0.002 22.3 2.9 30 78-110 8-37 (43)
16 1vf5_H Protein PET N; photosyn 23.7 61 0.0021 20.3 2.6 23 15-37 4-26 (29)
17 1q90_N Cytochrome B6F complex 20.6 61 0.0021 20.6 2.1 23 15-37 6-28 (31)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.91 E-value=2.9e-24 Score=209.06 Aligned_cols=195 Identities=17% Similarity=0.164 Sum_probs=132.2
Q ss_pred CCeeEEEEEECCCC-CHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCc
Q 015521 134 RRYLMVVGINTAFS-SRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVE 212 (405)
Q Consensus 134 ~~~~llI~V~Sa~~-~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~D 212 (405)
..-.|+|+|+|+++ +..|+++||+||++.... . .||.+... + ..+... ..++++..++.+
T Consensus 11 ~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~--------~---~fifsd~~--d----~~l~~~--~~~~~~~~~~~~ 71 (280)
T 2j0a_A 11 QLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQ--------Q---TFIFTDSP--D----ERLQER--LGPHLVVTQCSA 71 (280)
T ss_dssp CGGGEEEEEECCGGGTTTTHHHHHHTGGGGSGG--------G---EEEEESSC--C----HHHHHH--HGGGEEECCC--
T ss_pred CcccEEEEEECcHHHHHHHHHHHHHHHhccCCC--------c---eEEEcCCC--c----cccccc--ccccceeccccc
Confidence 34678899999998 557889999999987521 1 24333322 1 223322 245788877644
Q ss_pred --cccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCCCeEEEEeccCccccCCCCccccCccccc
Q 015521 213 --GYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKF 290 (405)
Q Consensus 213 --sY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~f 290 (405)
++.+++.|+...+++.. +.+++||+|+|||+|||+++|+++|..+.+..++|+|......+++ .+++.|...+
T Consensus 72 ~~~~~~l~~K~~~~~~~~l-~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~---~~~~~~~~~~- 146 (280)
T 2j0a_A 72 EHSHPALSCKMAAEFDAFL-VSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIH---ASELQSKQRT- 146 (280)
T ss_dssp -----CCCHHHHHHHHHHH-HHTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC-------------------
T ss_pred cccccchHHHHHHHHHHHh-CCCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCcccc---ccccCccccc-
Confidence 67889999999988654 3599999999999999999999999999888899999865332322 1345443222
Q ss_pred CCCCCCCCCCC-CCCceeeCHHHHHHHHHhcccc-------CCCCcchHHHHHHHh-hCCCeeecCCCcccCCC
Q 015521 291 GEAGNRYFRHA-TGQLYAISKDLAAYISINQHVL-------HKYANEDVSLGSWFI-GLDVEHIDDRRLCCGTP 355 (405)
Q Consensus 291 gd~~~~Yp~y~-~G~gYvLS~dla~~I~~~~~~l-------~~~~~EDV~vG~~l~-~L~v~~~~~~~f~~~~~ 355 (405)
+...| +|| +|+|||||+++++.|+...... .....||+++|.|+. .+||...+.+.|....+
T Consensus 147 --~~~~~-~y~~GGaG~vlSr~~l~~l~~~~~~~~~~~~~~~~~~~dD~~lG~Cl~~~lGV~~~~~~~Fh~~~~ 217 (280)
T 2j0a_A 147 --KLVRF-WFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHSHLE 217 (280)
T ss_dssp ------C-CEECGGGCEEEEHHHHHHHHHHHTTCTTSCCTTTTTSCHHHHHHHHHHHTTCCCEEECTTCCCSSS
T ss_pred --ccccc-CcccCCCEEEECHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhcCCCCceecccccCCCc
Confidence 12244 466 5789999999999999754322 223469999999998 99999999999987543
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=93.18 E-value=2 Score=43.07 Aligned_cols=166 Identities=14% Similarity=0.147 Sum_probs=87.8
Q ss_pred EEEEEEeecCCCCCChhHHHHHHHHhhcC-CeEeccCCccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHHH
Q 015521 175 IIMRFVIGHSATSGGILDRAIEAEDRKHG-DFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 253 (405)
Q Consensus 175 v~v~FviG~s~~~~~~~~~~L~~E~~~~~-DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 253 (405)
..++.|-..|. ++.....|++-.+.+. .+..+...+.. .+ -.+.+.+.+....+|++..|+|+.+.++.|..
T Consensus 62 ~EIIvVDd~S~--d~~t~~~l~~~~~~~~~~v~vi~~~~n~-G~----~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ 134 (472)
T 1xhb_A 62 EEIVLVDDASE--RDFLKRPLESYVKKLKVPVHVIRMEQRS-GL----IRARLKGAAVSRGQVITFLDAHCECTAGWLEP 134 (472)
T ss_dssp EEEEEEECSCC--CGGGTHHHHHHHHSSSSCEEEEECSSCC-CH----HHHHHHHHHHCCSSEEEEEESSEEECTTCHHH
T ss_pred eEEEEEECCCC--cHHHHHHHHHHHHHCCCcEEEEECCCCC-Ch----HHHHHHHHHhccCCeEEEECCCeEeCccHHHH
Confidence 45655554443 2234445555455666 45555443322 12 23445555556799999999999999988888
Q ss_pred HHHhcCCCCCeEE-EEec--cCcccc-CC-------CCccccCcccc-c---------CC-CCCCCCCCCCCCceeeCHH
Q 015521 254 TLVRHRSKPRVYI-GCMK--SGPVLN-QK-------GVRYHEPEYWK-F---------GE-AGNRYFRHATGQLYAISKD 311 (405)
Q Consensus 254 ~L~~~~~~~~lYi-G~~~--~gpv~r-~~-------~~Kwy~pe~~~-f---------gd-~~~~Yp~y~~G~gYvLS~d 311 (405)
++......+...+ |.+. ...... .. .-.|.....|. + .+ ......+++.|++++++++
T Consensus 135 ll~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~ 214 (472)
T 1xhb_A 135 LLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRD 214 (472)
T ss_dssp HHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHH
T ss_pred HHHHHHhCCCEEEEeeeeeEcCCCceeccCCCcccceeeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHH
Confidence 8876543343333 3221 110000 00 00111110000 0 00 0022335678999999999
Q ss_pred HHHHHHHhccccCCCCcchHHHHHHH--hhCCCeeecC
Q 015521 312 LAAYISINQHVLHKYANEDVSLGSWF--IGLDVEHIDD 347 (405)
Q Consensus 312 la~~I~~~~~~l~~~~~EDV~vG~~l--~~L~v~~~~~ 347 (405)
+...+---...+..+..||+-++.-+ .|..+..++.
T Consensus 215 ~~~~iGgfde~~~~~g~ED~dl~~R~~~~G~~i~~~p~ 252 (472)
T 1xhb_A 215 YFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTC 252 (472)
T ss_dssp HHHHTTSCCTTSCTTCCCCSHHHHHHHHTTCEEEEEEE
T ss_pred HHHHcCCCCCcccccCchhHHHHHHHHhcCCeEEEccC
Confidence 99887543344444557998887555 4554544433
No 3
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=92.31 E-value=5.2 Score=41.56 Aligned_cols=163 Identities=13% Similarity=0.046 Sum_probs=86.2
Q ss_pred EEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHHHH
Q 015521 175 IIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQT 254 (405)
Q Consensus 175 v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~ 254 (405)
..|+.|-..|. ++.+...|++-.+.+..|..+...+.. .+. .+.+.+.+....+|++..|+|+.+.++-|..+
T Consensus 145 ~EIIVVDDgS~--D~tl~~~l~~~~~~~~~v~vi~~~~n~-G~~----~A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~l 217 (570)
T 2d7i_A 145 AEIVLVDDFSD--REHLKKPLEDYMALFPSVRILRTKKRE-GLI----RTRMLGASVATGDVITFLDSHCEANVNWLPPL 217 (570)
T ss_dssp EEEEEEECSCC--CGGGTHHHHHHHTTSTTEEEEECSSCC-CHH----HHHHHHHHHCCSSEEEECCSSEEECTTCSHHH
T ss_pred EEEEEEECCCC--cHHHHHHHHHHHHhCCeEEEEECCCCC-CHH----HHHHHHHHhcCCCEEEEEcCCccccccHHHHH
Confidence 35655554443 333345555555666666555443322 222 24444555457899999999999999877777
Q ss_pred HHhcCCCCCeEEEEec---cCcc--ccC---CC----Ccccc-----C--cccccCCC-CCCCCCCCCCCceeeCHHHHH
Q 015521 255 LVRHRSKPRVYIGCMK---SGPV--LNQ---KG----VRYHE-----P--EYWKFGEA-GNRYFRHATGQLYAISKDLAA 314 (405)
Q Consensus 255 L~~~~~~~~lYiG~~~---~gpv--~r~---~~----~Kwy~-----p--e~~~fgd~-~~~Yp~y~~G~gYvLS~dla~ 314 (405)
+......+.+.+|... .+.. .+. .. -.|.. + ....+.++ .....+++.|++.++++++..
T Consensus 218 l~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~ 297 (570)
T 2d7i_A 218 LDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFW 297 (570)
T ss_dssp HHHHHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEECTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHH
T ss_pred HHHHHhCCCEEEeeeeeccCCCchhhccccCCcccccccccccccccccchhhhccCCCcceecccccceEEEEEHHHHH
Confidence 7665433444444321 1110 000 00 00100 0 00001000 011234578999999999998
Q ss_pred HHHHhccccCCCCcchHHHHHHHh--hCCCee
Q 015521 315 YISINQHVLHKYANEDVSLGSWFI--GLDVEH 344 (405)
Q Consensus 315 ~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~ 344 (405)
.|---...+..+..||+-+..-+. |..+..
T Consensus 298 ~iGgfDe~~~~~g~ED~dl~~Rl~~~G~~i~~ 329 (570)
T 2d7i_A 298 ELGGYDPGLEIWGGEQYEISFKVWMCGGRMED 329 (570)
T ss_dssp HTTSSCTTCCSSSSHHHHHHHHHHHTTCEEEE
T ss_pred hcCCCCCcccccCcchHHHHHHHHhCCCeEEE
Confidence 875433444444579998876554 444443
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=91.01 E-value=8.2 Score=34.41 Aligned_cols=117 Identities=9% Similarity=-0.046 Sum_probs=68.2
Q ss_pred HHHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCC--CCCeEEEEec----c--CccccCCCCccccCcccccCCCC
Q 015521 223 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRS--KPRVYIGCMK----S--GPVLNQKGVRYHEPEYWKFGEAG 294 (405)
Q Consensus 223 ~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~--~~~lYiG~~~----~--gpv~r~~~~Kwy~pe~~~fgd~~ 294 (405)
..++.+.+..+.+|++.+|+|.++.++.|..++..... ...+..|.+. . +.++ ..+..|..- + .
T Consensus 78 ~a~N~gi~~a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~-~---~ 149 (255)
T 1qg8_A 78 ALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIV----KETVRPAAQ-V---T 149 (255)
T ss_dssp HHHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEE----EEEEECCCS-C---B
T ss_pred HHHHHHHHHcCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceEEEEeCCCCcch----hhccCchHH-H---H
Confidence 45666666668999999999999999888877766532 3344444432 1 1111 111122110 0 0
Q ss_pred CCCCCCCCCCceeeCHHHHHHHH-Hhc----cccCCCCcchHHHHHHHhhCC-CeeecC
Q 015521 295 NRYFRHATGQLYAISKDLAAYIS-INQ----HVLHKYANEDVSLGSWFIGLD-VEHIDD 347 (405)
Q Consensus 295 ~~Yp~y~~G~gYvLS~dla~~I~-~~~----~~l~~~~~EDV~vG~~l~~L~-v~~~~~ 347 (405)
.....+..|++.++.++++..+- .-. ........||..+..-+...+ +..++.
T Consensus 150 ~~~~~~~~~~~~~~rr~~~~~~g~~f~~~~~~~~~~~~~eD~~~~~r~~~~g~~~~~~~ 208 (255)
T 1qg8_A 150 WNAPCAIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNHFYPFYPLDE 208 (255)
T ss_dssp SCCTTTSCGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTTTCCBEEEEE
T ss_pred HhhcCCCccceEEEEHHHHHhhcccccccccCCcccchHHHHHHHHHHHHhCCEEEecC
Confidence 12334577999999999999976 220 011223589999877764333 444433
No 5
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=90.98 E-value=6.4 Score=39.81 Aligned_cols=161 Identities=12% Similarity=0.001 Sum_probs=84.7
Q ss_pred EEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHHHH
Q 015521 175 IIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQT 254 (405)
Q Consensus 175 v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~ 254 (405)
..|++|-..|. ++.+. ...+.+..+..+...+.. - .-.+++.+......+|++.+|+|+.+.++-|..+
T Consensus 99 ~EIIvVDDgS~--D~t~~----~~~~~~~~v~vi~~~~n~---G--~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 99 KEIILVDDYSN--DPEDG----ALLGKIEKVRVLRNDRRE---G--LMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp EEEEEEECSCS--CTHHH----HGGGGBTTEEEEECSSCC---H--HHHHHHHHHHHCCSSEEEECCSSEEECTTCHHHH
T ss_pred eeEEEEECCCC--chHHH----HHHhcCCCEEEEECCCCc---C--HHHHHHHHHHhcCCCEEEEECCCcccCccHHHHH
Confidence 46666665443 22322 223445555555443322 1 2234555555568999999999999999888888
Q ss_pred HHhcCCCCCeEEEEec---cCccc---------c-----CCCCccc-cCcc-c--ccCCC-CCCCCCCCCCCceeeCHHH
Q 015521 255 LVRHRSKPRVYIGCMK---SGPVL---------N-----QKGVRYH-EPEY-W--KFGEA-GNRYFRHATGQLYAISKDL 312 (405)
Q Consensus 255 L~~~~~~~~lYiG~~~---~gpv~---------r-----~~~~Kwy-~pe~-~--~fgd~-~~~Yp~y~~G~gYvLS~dl 312 (405)
+......+...++... ..... + ....+|. .+.. . ...++ .....+++.|++.++++++
T Consensus 168 l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~ 247 (501)
T 2ffu_A 168 LERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFY 247 (501)
T ss_dssp HHHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHH
T ss_pred HHHHHhCCCeEEEeeeccCcCCCceeecCCcccceEeeecCCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHHH
Confidence 7765433333333221 10000 0 0000110 0100 0 00000 1122356789999999999
Q ss_pred HHHHHHhccccCCCCcchHHHHHHH--hhCCCeeec
Q 015521 313 AAYISINQHVLHKYANEDVSLGSWF--IGLDVEHID 346 (405)
Q Consensus 313 a~~I~~~~~~l~~~~~EDV~vG~~l--~~L~v~~~~ 346 (405)
...+---...+..+..||+-+..-+ .|..+..+.
T Consensus 248 ~~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p 283 (501)
T 2ffu_A 248 FEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIP 283 (501)
T ss_dssp HHHTTCCCTTCCSSSSHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhCCCCccccccCcchHHHHHHHHhcCCeEEEcc
Confidence 9887543344444458999887655 455444443
No 6
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=89.27 E-value=9.3 Score=40.66 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=65.2
Q ss_pred HHHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCC-CeEEE-Eec--cCc--------cccCCCCccc-cCcccc
Q 015521 223 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKP-RVYIG-CMK--SGP--------VLNQKGVRYH-EPEYWK 289 (405)
Q Consensus 223 ~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~-~lYiG-~~~--~gp--------v~r~~~~Kwy-~pe~~~ 289 (405)
.+++.|....+++|++.+|||+.+.++.|..++......+ ...+| .+. ..+ .+......|. .|...+
T Consensus 258 ~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 337 (657)
T 4fix_A 258 RVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAPHAEY 337 (657)
T ss_dssp HHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEEEETTSTTEECCSCEEEETTTTEEEECTTCCS
T ss_pred HHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEEecCCCCceeeecccEeccccccccccccccc
Confidence 3566665544789999999999999998888776553222 22344 332 111 1100000010 000000
Q ss_pred ---cC-------------CCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCC
Q 015521 290 ---FG-------------EAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD 341 (405)
Q Consensus 290 ---fg-------------d~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~ 341 (405)
|+ ........|++|++.++.+++++.+---.. -.+..||+-++.=+...|
T Consensus 338 ~~~f~~~~l~~~~~~~~~~~~~~~v~~~~g~~~lirr~v~~~vGgfd~--~F~~~ED~Dl~lR~~~~G 403 (657)
T 4fix_A 338 DHDFAEYPLNDNNSRSKLLHRRIDVDYNGWWTCMIPRQVAEELGQPLP--LFIKWDDADYGLRAAEHG 403 (657)
T ss_dssp CEETTTSCSSCSSHHHHGGGBCCCCSBCCTTEEEEEHHHHHHHCSCCS--CSSSSHHHHHHHHHHHTT
T ss_pred cccccccccccccccccccccceeccccchhHhHhhHHHHHHhCCChh--HhccCcHHHHHHHHHHcC
Confidence 00 001123457899999999999998643221 123569999998775444
No 7
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=87.87 E-value=10 Score=33.28 Aligned_cols=165 Identities=9% Similarity=0.017 Sum_probs=81.2
Q ss_pred cEEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHHH
Q 015521 174 GIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 253 (405)
Q Consensus 174 ~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 253 (405)
.+.++.|-..|. + .....+++-.+++..|..+. .+ |.- .-...+.+.+....+|++.+|+|.++.++.|..
T Consensus 34 ~~eiIvvDd~S~--d-~t~~~~~~~~~~~~~i~~i~-~~---n~G--~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~ 104 (240)
T 3bcv_A 34 DIEIILIDDESP--D-NCPKICDDYAAQYPNIKVIH-KK---NAG--LGMACNSGLDVATGEYVAFCDSDDYVDSDMYMT 104 (240)
T ss_dssp SEEEEEEECCCS--S-SHHHHHHHHHHHCSSEEEEE-CC---CCC--HHHHHHHHHHHCCSSEEEECCTTCCCCTTHHHH
T ss_pred CeEEEEEECCCC--c-CHHHHHHHHHhhCCCEEEEE-CC---CCC--hHHHHHHHHHHcCCCEEEEECCCCcCCHHHHHH
Confidence 567766665443 2 23344444455566665554 22 222 123455566656889999999999999988887
Q ss_pred HHHhcCC-CCCeEEEEec----cCc----cccCC-CCccccCccc------ccCCCCCCC---C-CCCCCCceeeCHHHH
Q 015521 254 TLVRHRS-KPRVYIGCMK----SGP----VLNQK-GVRYHEPEYW------KFGEAGNRY---F-RHATGQLYAISKDLA 313 (405)
Q Consensus 254 ~L~~~~~-~~~lYiG~~~----~gp----v~r~~-~~Kwy~pe~~------~fgd~~~~Y---p-~y~~G~gYvLS~dla 313 (405)
++..... ...+.+|... .+. +...+ ...++....+ .++. ...+ + ...+|++.++.++++
T Consensus 105 l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~rr~~~ 183 (240)
T 3bcv_A 105 MYNVAQKYTCDAVFTGLKRITMAGIPTGTVTHQKEFKLYKNKNEIHTLLKDLIAS-DPYAREERAIQVSAKVVLYRRNLI 183 (240)
T ss_dssp HHHHHHHHTCSEEEC--------------------CEEECSHHHHHHHHGGGTSS-CHHHHHHHHHHHTCSCEEEEHHHH
T ss_pred HHHHHHhcCCCEEEEeeEEEccCCccccccccccccccccCHHHHHHHHHHHhhc-chhhccccccccchhheeeeHHHH
Confidence 7765532 3344444321 111 10000 0111111000 0000 0000 0 013578889999999
Q ss_pred HHHHHhccccCCCCcchHHHHHHHh--hCCCeeecCC
Q 015521 314 AYISINQHVLHKYANEDVSLGSWFI--GLDVEHIDDR 348 (405)
Q Consensus 314 ~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~~~~~ 348 (405)
+.+-.....-..+..||+.+..-+. |..+..+++.
T Consensus 184 ~~~g~~f~~~~~~~~eD~~~~~r~~~~g~~i~~~~~~ 220 (240)
T 3bcv_A 184 EKKHLRFVSERILPSEDLIFNVDVLANSNIVCVLPQT 220 (240)
T ss_dssp HHTTCCCCCTTTCTTHHHHHHHHHHTTCSCEEECC--
T ss_pred HHcCCccCCCCCccCCCHHHHHHHHHhCCEEEEECCC
Confidence 8853111111123469999987664 4445555554
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=85.41 E-value=11 Score=38.95 Aligned_cols=126 Identities=14% Similarity=0.128 Sum_probs=68.1
Q ss_pred HHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCCC-eEEEEec---cCc-c----------ccC-----------
Q 015521 224 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPR-VYIGCMK---SGP-V----------LNQ----------- 277 (405)
Q Consensus 224 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~-lYiG~~~---~gp-v----------~r~----------- 277 (405)
.++.+....+.+|++.+|+|..+.++.|..++......+. ..+|... .+. . +..
T Consensus 165 a~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (625)
T 2z86_A 165 VRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVA 244 (625)
T ss_dssp HHHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEEECCEEEECCTTCCHHHHHHSTTGGGTSCC--------
T ss_pred HHHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEEEEeeeeccCcccchhhcccchHHhhhcchhccCCchh
Confidence 4555555568999999999999999888887766543332 2333321 111 0 000
Q ss_pred ------CCCccccCccc---ccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhCC--Ceeec
Q 015521 278 ------KGVRYHEPEYW---KFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHID 346 (405)
Q Consensus 278 ------~~~Kwy~pe~~---~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~~~ 346 (405)
....|...... .+. .......++.|++.+++++++..+---...+..+..||.-++.=+...| +..++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~rr~~l~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p 323 (625)
T 2z86_A 245 GKVEQNKSVDWRIEHFKNTDNLR-LCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREGCYFRSVE 323 (625)
T ss_dssp -------CCCTHHHHHHHTTTTT-TCSCGGGGCCTTEEEEETHHHHHHCCCCTTCSSCCCHHHHHHHHHHHTTCEEEECG
T ss_pred hhhccCCccccchhhhccccccc-ccCCceeEEeeceeeeEHHHHHHhCCCccccccCCcchhhhhhhHHhCCceEEEcc
Confidence 00011000000 000 0011123478999999999999874333334444579999987775444 44444
Q ss_pred CCCc
Q 015521 347 DRRL 350 (405)
Q Consensus 347 ~~~f 350 (405)
+...
T Consensus 324 ~~~v 327 (625)
T 2z86_A 324 GAMA 327 (625)
T ss_dssp GGCE
T ss_pred cchh
Confidence 3333
No 9
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=73.15 E-value=39 Score=36.61 Aligned_cols=132 Identities=13% Similarity=-0.030 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhccCcceEEEeCCceEeeHHHHHHHHHhcCCCCC--eEEEEec--cCccc-cC--CCCcccc-Ccccc-
Q 015521 219 AKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPR--VYIGCMK--SGPVL-NQ--KGVRYHE-PEYWK- 289 (405)
Q Consensus 219 ~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~--lYiG~~~--~gpv~-r~--~~~Kwy~-pe~~~- 289 (405)
.|. ..++.+.+..+.+|++.+|+|+.+.++.|..++......++ +..|... +..+. +. ....+.. .+.++
T Consensus 225 GKa-~alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (802)
T 4hg6_A 225 AKA-GNMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYG 303 (802)
T ss_dssp HHH-HHHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHH
T ss_pred cch-HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHH
Confidence 444 24666766678999999999999999988888876532232 2222211 11100 00 0000000 00000
Q ss_pred cCCC--CCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhhC--CCeeecCCCcccCC
Q 015521 290 FGEA--GNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGL--DVEHIDDRRLCCGT 354 (405)
Q Consensus 290 fgd~--~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L--~v~~~~~~~f~~~~ 354 (405)
.... ...-.+++.|++.++.+++++.+---. .....||..++.-+... .+..+++....+..
T Consensus 304 ~~~~~~~~~~~~~~~G~~~~~Rr~al~~vGgf~---~~~~~ED~~l~~rl~~~G~ri~~~~~~~~~~~~ 369 (802)
T 4hg6_A 304 KIHRGLDRWGGAFFCGSAAVLRRRALDEAGGFA---GETITEDAETALEIHSRGWKSLYIDRAMIAGLQ 369 (802)
T ss_dssp THHHHHHHTTCCCCCSSSEEEEHHHHHHHTTCC---CSSSSHHHHHHHHHHTTTCCEEECCCCCEEECC
T ss_pred HHHhhHhhcCCceecccchhhhHHHHHHcCCcC---CCCcchHHHHHHHHHHcCCeEEEecCCEEEecC
Confidence 0000 000113467999999999999863211 12235999999888644 45556665555543
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=70.98 E-value=55 Score=33.61 Aligned_cols=156 Identities=11% Similarity=0.046 Sum_probs=79.8
Q ss_pred CcEEEEEEeecCCCCCChhHHHHHHHHhhcCCeEeccCCccccchhHHHHHHHHHHHhccCcceEEEeCCceEeeHHHHH
Q 015521 173 KGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLG 252 (405)
Q Consensus 173 ~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~ 252 (405)
..+.++.|-..|. ++ ....+.+-.+.+..+..+. .+ |.- .-..++.+......+|++.+|+|.++.++.|.
T Consensus 403 ~~~eiivvdd~S~--d~-t~~~~~~~~~~~~~i~~~~-~~---n~G--~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~ 473 (625)
T 2z86_A 403 TDLEVCICDDGST--DD-TLRILQEHYANHPRVRFIS-QK---NKG--IGSASNTAVRLCRGFYIGQLDSDDFLEPDAVE 473 (625)
T ss_dssp CSEEEEEEEESCS--SS-HHHHHHHHHTTCTTEEEEE-EC---CCC--HHHHHHHHHHHCCSSEEEECCTTCEECTTHHH
T ss_pred CCeEEEEEECcCC--hh-HHHHHHHHHhhCCcEEEEe-CC---CCC--HHHHHHHHHHhcCCCEEEEECCCcccChhHHH
Confidence 3567766665554 22 3333443344555555553 22 221 12345556655688999999999999999888
Q ss_pred HHHHhcC--CCCCeEEEEec----cCccccCCCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCC
Q 015521 253 QTLVRHR--SKPRVYIGCMK----SGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKY 326 (405)
Q Consensus 253 ~~L~~~~--~~~~lYiG~~~----~gpv~r~~~~Kwy~pe~~~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~ 326 (405)
.++.... +.-.+..+... .+..+... +..+. +. .......++.|.+.++.+++...+---...+ .
T Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~-~~---~~~~~~~~~~~~~~~~~r~~~~~~ggfd~~~--~ 544 (625)
T 2z86_A 474 LCLDEFRKDLSLACVYTTNRNIDREGNLISNG---YNWPI-YS---REKLTSAMICHHFRMFTARAWNLTEGFNESI--S 544 (625)
T ss_dssp HHHHHHHHCTTCSEEEEEEEEECTTSCEEEEC---CCCSS-CC---HHHHTTSCCCCSCEEEEHHHHTTTTCCCSSC--S
T ss_pred HHHHHHHhCCCeeEEEeeeEEECCCCCEeccC---ccccc-CC---HHHHhhcccCCceEEEEHHHHHHhCCCCCcc--C
Confidence 8776542 22223223211 12111110 11111 00 0001223456788899998765543211122 2
Q ss_pred CcchHHHHHHHhhCC-Ceeec
Q 015521 327 ANEDVSLGSWFIGLD-VEHID 346 (405)
Q Consensus 327 ~~EDV~vG~~l~~L~-v~~~~ 346 (405)
..||.-+..-+...+ +.+++
T Consensus 545 ~~eD~dl~~r~~~~g~~~~~~ 565 (625)
T 2z86_A 545 NAVDYDMYLKLSEVGPFKHIN 565 (625)
T ss_dssp SCHHHHHHHHHTTTSCEEEEE
T ss_pred ChHHHHHHHHHHHhCCEEEeC
Confidence 569998877665444 43443
No 11
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=48.52 E-value=1.3e+02 Score=27.34 Aligned_cols=132 Identities=12% Similarity=0.010 Sum_probs=72.0
Q ss_pred HHHHHHhhcCCeEeccCCccccchhHHHHHHHHHHHhccCcceEEEeCCc---eEeeHHHHHHHHHhcCCCCCeEEEEe-
Q 015521 194 AIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDD---VHVNIATLGQTLVRHRSKPRVYIGCM- 269 (405)
Q Consensus 194 ~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDD---vfVn~~~L~~~L~~~~~~~~lYiG~~- 269 (405)
.|+.+..+.|==+++...++.-....=. .+.-..+..++++++.+|-| +-.+++.+.++|+.. ..+.+|..
T Consensus 16 ~l~~~l~~~gi~~~l~~~~SlI~raRN~--lv~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rLl~~g---~DVV~GsYp 90 (203)
T 2c0n_A 16 PLIDFLVKNDIEYVILSRRNHVAVQREI--ALDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAKFNEG---YDVVCGYYY 90 (203)
T ss_dssp HHHHHHHHTTCCEEEECCCSCHHHHHHH--HHHHHHHCTTCCEEEEECTTEEEEECCHHHHHHHHHHT---CSEEEEECB
T ss_pred HHHHHHHhCCCeEEEEccccchHHHHHH--HHHHHHhcCCCCEEEEEeCCCCccccCHHHHHHHHhCC---CCEEEEEee
Confidence 3555555554444555443332111111 11112345689999999999 999999999999653 36788873
Q ss_pred -ccCccccCCCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhcc------ccCCCCcchHHHHHHH
Q 015521 270 -KSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQH------VLHKYANEDVSLGSWF 337 (405)
Q Consensus 270 -~~gpv~r~~~~Kwy~pe~~~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~------~l~~~~~EDV~vG~~l 337 (405)
++..-. ....+.|.-. +. ..=-.||+.|.-+++|.+...|....- ..+..--|||++=.-.
T Consensus 91 ~K~~~~~-s~~a~~y~~~---i~---~~~V~d~~tGF~lIkR~V~e~L~~p~fl~~~~~e~~~~~gEdv~F~~~~ 158 (203)
T 2c0n_A 91 LKTLRGY-SVYRKDWEKE---IF---DGEVNGCGLGFTFIKREFLEKIKRPAFLAFKPIESPHWIGEDVYFFSTH 158 (203)
T ss_dssp CTTSSSB-SEESSSBCSS---CC---CEECSEECSSEEEEEHHHHTTSCSSCCCC---------CCHHHHHHHHH
T ss_pred ccCCCcc-chHHHHHHHh---cc---CceeeeccccEEEEhHHHHHHHhhhhhhcCChhhhccccCCceEEEecc
Confidence 221100 0001111111 10 012347889999999999998755421 1223345898885544
No 12
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=46.29 E-value=50 Score=32.23 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=48.4
Q ss_pred HHHHHHHHhccCcceEEEeCCceEeeHHHHH---HHHHhcCCCCCeEEEEeccCccccCCCCccccCcccccCCCCCCCC
Q 015521 222 KIYFATAVSLWDADFYVKVDDDVHVNIATLG---QTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYF 298 (405)
Q Consensus 222 ~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~---~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kwy~pe~~~fgd~~~~Yp 298 (405)
..+++++....++++++.+|||..+.++=+. +.|......++++.-+-.+........ .-..+..+++.
T Consensus 88 ~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~D~~I~~ISa~n~~g~~~~~-~~~~~~~lyrs------- 159 (343)
T 1fo8_A 88 RWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVSAWNDNGKEQMV-DSSKPELLYRT------- 159 (343)
T ss_dssp HHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEEESCCTTCBGGGS-CTTCTTCEEEE-------
T ss_pred HHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHHHhhcCCcEEEEecccCccccccc-cccCcceEEee-------
Confidence 3455555554579999999999999997663 333333344566532211111100000 00122223321
Q ss_pred CCCCCCceeeCHHHHHHHH
Q 015521 299 RHATGQLYAISKDLAAYIS 317 (405)
Q Consensus 299 ~y~~G~gYvLS~dla~~I~ 317 (405)
.|..|-|+++++++-+.+-
T Consensus 160 ~~f~~wGWa~wr~~W~e~~ 178 (343)
T 1fo8_A 160 DFFPGLGWLLLAELWAELE 178 (343)
T ss_dssp SSCCCSSEEEEHHHHHHHG
T ss_pred cCCCchhhhhcHHHHHHHh
Confidence 2445789999999988654
No 13
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=34.42 E-value=79 Score=31.34 Aligned_cols=170 Identities=8% Similarity=-0.058 Sum_probs=84.5
Q ss_pred cEEEEEEeecCCCCCChhHHHHHHHHh-hcCC-eEeccCCc-c--ccchhHHHHHHHHHHHhccCcceEEEeCCce-Eee
Q 015521 174 GIIMRFVIGHSATSGGILDRAIEAEDR-KHGD-FMRLDHVE-G--YLELSAKTKIYFATAVSLWDADFYVKVDDDV-HVN 247 (405)
Q Consensus 174 ~v~v~FviG~s~~~~~~~~~~L~~E~~-~~~D-IL~ld~~D-s--Y~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDv-fVn 247 (405)
...+++|=+.|.+.-..+-+.+..+.. .++. ++...... . -.....=...+|+||....+.++++.+|-|. ..+
T Consensus 28 ~~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~ 107 (397)
T 2bo4_A 28 RVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFG 107 (397)
T ss_dssp TCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCC
T ss_pred CeEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCC
Confidence 356788887775310111111222332 3444 33332220 1 1234444667888887445889999999999 488
Q ss_pred HHHHHHHHHhcCCCCCeEEEEecc---CccccCCCCccccCcccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhc--cc
Q 015521 248 IATLGQTLVRHRSKPRVYIGCMKS---GPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQ--HV 322 (405)
Q Consensus 248 ~~~L~~~L~~~~~~~~lYiG~~~~---gpv~r~~~~Kwy~pe~~~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~--~~ 322 (405)
+.-+..++......-.+.+|.... +..+.....++.... .+.+-.........++.+++++++++.+.... ..
T Consensus 108 P~~i~~Ll~~l~~g~D~V~g~~~r~~~~~~~~~~~~~~ll~~--~~~~~~~~~i~dp~sG~~a~~R~vl~~l~~~~~~~~ 185 (397)
T 2bo4_A 108 PDWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFAL--LWPHTELSWIEQPLGGELLMRREVAAMLYEDERVRR 185 (397)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHTHHHHHHH--HCTTSSGGGCSCTTCCCEEEEHHHHHHHHHCHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccccCCcHHHHHHHHHHHHH--HHHHhhccccccCCcccEEEeHHHHHHHhhhcccCc
Confidence 887777776543333566675321 111100001110000 00000001223345778899999999885421 12
Q ss_pred cCCCCcchHHHHHHH--hhCCCeeec
Q 015521 323 LHKYANEDVSLGSWF--IGLDVEHID 346 (405)
Q Consensus 323 l~~~~~EDV~vG~~l--~~L~v~~~~ 346 (405)
.+.|. .|+.+-..+ .|+.|..+.
T Consensus 186 ~~~fg-~eiel~~~a~~~G~rI~EVp 210 (397)
T 2bo4_A 186 RSDWG-IDTLYTFVTVQQGVSIYECY 210 (397)
T ss_dssp CCSTT-HHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcc-hHHHHHHHHHHcCCEEEEEE
Confidence 33343 466665544 456665443
No 14
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=32.07 E-value=55 Score=25.65 Aligned_cols=70 Identities=27% Similarity=0.368 Sum_probs=43.7
Q ss_pred EECCCCCHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCChhHHHHHHHHhhcC---CeEeccCCccccchh
Q 015521 142 INTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHG---DFMRLDHVEGYLELS 218 (405)
Q Consensus 142 V~Sa~~~~~rR~aIReTW~~~~~~l~~l~~~~~v~v~FviG~s~~~~~~~~~~L~~E~~~~~---DIL~ld~~DsY~nLt 218 (405)
|.|+.++.+-|+.|... .. +..-.++||-|.+.+. -...+.|+++-| |+|-- . .-++|+
T Consensus 31 irtatssqdirdiiksm--kd---------ngkplvvfvngasqnd----vnefqneakkegvsydvlks--t-dpeelt 92 (112)
T 2lnd_A 31 IRTATSSQDIRDIIKSM--KD---------NGKPLVVFVNGASQND----VNEFQNEAKKEGVSYDVLKS--T-DPEELT 92 (112)
T ss_dssp EEEECSHHHHHHHHHHH--TT---------CCSCEEEEECSCCHHH----HHHHHHHHHHHTCEEEEEEC--C-CHHHHH
T ss_pred eeeccchhhHHHHHHHH--Hh---------cCCeEEEEecCccccc----HHHHHHHHHhcCcchhhhcc--C-CHHHHH
Confidence 56777778888877642 21 2233577999987541 234566666554 33321 2 235799
Q ss_pred HHHHHHHHHHH
Q 015521 219 AKTKIYFATAV 229 (405)
Q Consensus 219 ~Kt~~~~~wa~ 229 (405)
..+..|++.|-
T Consensus 93 qrvreflktag 103 (112)
T 2lnd_A 93 QRVREFLKTAG 103 (112)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcc
Confidence 99999998874
No 15
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=24.92 E-value=58 Score=22.31 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=21.5
Q ss_pred chhhhhhhhhHHHHHhhhhhHHHHHHHHHHHHh
Q 015521 78 KDIFGEVFKTHNAIQTLDKTISNLEMELAAARA 110 (405)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~ 110 (405)
.|+++++...++ +|+++|..||..|.+-..
T Consensus 8 ydlvsel~~r~e---~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 8 YDMISDLNERSE---DFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH---HHHHHHHHHHHHHHHHHH
Confidence 456666655555 689999999998877654
No 16
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=23.74 E-value=61 Score=20.33 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHHHHHHHHHhcc
Q 015521 15 VSQKWTFLLCLGCFCAGMLFTNR 37 (405)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (405)
++--|+.++.+|+|-..+.+-||
T Consensus 4 vsl~WaalmvvftfSlslVVWGR 26 (29)
T 1vf5_H 4 DVLGWVALLVVFTWSIAMVVWGR 26 (29)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhheeeeEEEEec
Confidence 46679999999999999988777
No 17
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=20.62 E-value=61 Score=20.63 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.0
Q ss_pred cchHHHHHHHHHHHHHHHHHhcc
Q 015521 15 VSQKWTFLLCLGCFCAGMLFTNR 37 (405)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (405)
++--|+.++.+|+|-..+.+-||
T Consensus 6 vsl~WaalmvvfTfSlslVVWGR 28 (31)
T 1q90_N 6 VQIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHhheeeEEEEEec
Confidence 45679999999999999998887
Done!