Query 015522
Match_columns 405
No_of_seqs 136 out of 1026
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 14:05:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3npe_A 9-CIS-epoxycarotenoid d 100.0 4.5E-96 2E-100 763.2 40.0 379 3-404 140-529 (529)
2 2biw_A Apocarotenoid-cleaving 100.0 5.3E-92 1.8E-96 728.3 40.0 344 32-396 130-490 (490)
3 3kvc_A Retinoid isomerohydrola 100.0 6.1E-86 2.1E-90 689.3 31.1 341 32-396 128-533 (533)
4 1qks_A Cytochrome CD1 nitrite 28.2 4.8E+02 0.016 26.3 12.8 106 243-382 179-285 (567)
5 2xpn_B SPT6, chromatin structu 14.1 55 0.0019 18.7 0.7 10 273-282 11-20 (26)
6 3nol_A Glutamine cyclotransfer 13.8 2.4E+02 0.0081 25.8 5.4 37 40-79 177-214 (262)
7 4guc_A Protein BA_2500; virule 12.9 5.3E+02 0.018 20.6 7.2 48 92-147 35-89 (120)
8 3c75_H MADH, methylamine dehyd 12.6 4.9E+02 0.017 25.3 7.7 86 278-389 85-182 (426)
9 1fwx_A Nitrous oxide reductase 12.0 3.5E+02 0.012 27.8 6.6 25 357-383 171-195 (595)
10 3nol_A Glutamine cyclotransfer 11.7 2E+02 0.0069 26.3 4.2 73 38-125 90-164 (262)
No 1
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}
Probab=100.00 E-value=4.5e-96 Score=763.19 Aligned_cols=379 Identities=40% Similarity=0.722 Sum_probs=340.3
Q ss_pred cccccchhHHHHHHHHHHHHHhcccccCCCCCcceeEEEEECCEEEEEEcCCccEEEEcCCCCCccccceeccccccCCC
Q 015522 3 IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQHS 82 (405)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~ANt~V~~~~g~llAl~E~g~P~~ld~~~~~tLeT~g~~d~~~~l~~~ 82 (405)
++++.+.+++....+...|..+++++...++|+|||||++|+||||||||+|.||++++||+.||||+|.+||+|+|+.+
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~l~~~ 219 (529)
T 3npe_A 140 IGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCA 219 (529)
T ss_dssp TTTTTSSTHHHHHHHHHHHHHTTSCCGGGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGCCCSC
T ss_pred cccccccchhhhhhhhhhhcccccccccccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCCCcceeeeeccCCccCCc
Confidence 67788888899999888999999888777789999999999999999999999999977664599999999999999999
Q ss_pred CCCCceeeCCCCcEEEEEecCC-CCeEEEEEEcCCCCeeeeEEEEeCCCcceeeeeecCCEEEEEeCCcccChHHHhhcC
Q 015522 83 FTAHPKVDPYTGEMFTFGYAHT-PPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKEN 161 (405)
Q Consensus 83 ftAHP~~Dp~tG~~~~fg~~~~-~~~~~~~~~~~~g~~~~~~~~~~p~~~~iHdf~vTeny~V~~~~P~~~~~~~~l~~~ 161 (405)
||||||+||+|||+++|+++.. .|++.|++++++|++.+.+++++|.++|||||+|||||+||+++|+.+|+.+|+. |
T Consensus 220 ~tAHPk~Dp~TGel~~f~y~~~~~p~~~~~~~~~~G~~~~~~~i~~~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~~~-g 298 (529)
T 3npe_A 220 MIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLR-G 298 (529)
T ss_dssp CCSCCEECTTTCCEEEEECCSSSSCCCEEEEECTTCCBCCCEECCCSSCBCCCCCEECSSEEEEEECSEEECGGGGTT-T
T ss_pred ccccCcCCCCCCcEEEEEeecCCCCcEEEEEECCCCCEEEEEEEeCCCCceEeeEEecCCeEEEEeCCeEEcHHHHhC-C
Confidence 9999999999999999999864 5899999999999998888889999999999999999999999999999999975 6
Q ss_pred CceeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEecccceecC--CeEEEEEEecCCCCccccchhhhhhcccccc
Q 015522 162 KLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEE--DEVVLITCRLDKPDLDMVNGAVKEKLENFSN 239 (405)
Q Consensus 162 ~~~~~w~~~~~t~~~vipR~~~~~~~v~~~~~~~~f~fH~~NAyE~~--~~ivvd~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (405)
+.++.|+|++++||+||||++++...++||++|+||+||++|||||+ |+||+|.|++.+.+. .+. .......+
T Consensus 299 ~~~~~~~p~~~tr~~VipR~~~~~~~vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~-~~~----~~~~~~~~ 373 (529)
T 3npe_A 299 GSPVVLDAAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADS-IFN----ESDERLES 373 (529)
T ss_dssp CCSEEECTTSCCEEEEEETTCSSGGGCEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCC-SCC----SSSSCCCC
T ss_pred CCceEECCCCCcEEEEEECCCCCCCceEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchh-hhh----ccchhhcc
Confidence 78999999999999999999865568999999999999999999974 689998888755331 111 11234568
Q ss_pred cEEEEEEeCCCCCeeEEEcc----cCCccCcccCCCCCCCCCceEEEeecCCCCCcCeEEEEEccCCCCCccceeeecCc
Q 015522 240 ELYEMRFNLKTGLASQKRLS----ASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGN 315 (405)
Q Consensus 240 ~l~R~~idl~~g~~~~~~L~----~~~~EfP~In~~~~g~~yry~Y~~~~~~~~~~~~l~K~D~~t~~~~g~~~~~~~~~ 315 (405)
.|+||+||+.+|+++++.|. +.++|||+||++|.||+|||+|+++.++...+++|+|+|++|+ +
T Consensus 374 ~l~r~rl~l~~g~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~tg----~-------- 441 (529)
T 3npe_A 374 VLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTG----E-------- 441 (529)
T ss_dssp EEEEEEECTTTCCEEEEESSCSSSCCCEEEEEECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTTC----C--------
T ss_pred ceEEEEEcCCCCCEEeEEecccccCccccCceEChhHcCCccceEEEeccCCCCCcceEEEEecCCC----c--------
Confidence 99999999999999888887 4889999999999999999999998876667899999999974 3
Q ss_pred eeeEEEcCCCccccceEEeeCCC----CCCCCCCCeEEEEEEEeCCCCceEEEEEeCCCCCCCceEEEEcCCcCCCCCCc
Q 015522 316 VRGIFDLGPGRFGSEAVFVPREP----GTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHA 391 (405)
Q Consensus 316 ~~~~~~~~~~~~~~EPvFVPrp~----~~~~~EDDG~LLs~v~d~~~~~s~LlILDA~~l~~gpvAr~~Lp~~iP~gfHG 391 (405)
.+.||+++++++|||||||||+ + ++|||||||++|+|..+++|+|+||||++|+ +|||++||++||+||||
T Consensus 442 -~~~~~~g~~~~~~EPvFVPrp~~~~~~--~~EDDG~lLs~V~d~~~~~S~LlILDA~~l~--~vArv~LP~rvP~GfHG 516 (529)
T 3npe_A 442 -LTKFEYGEGRFGGEPCFVPMDPAAAHP--RGEDDGYVLTFVHDERAGTSELLVVNAADMR--LEATVQLPSRVPFGFHG 516 (529)
T ss_dssp -EEEEECCTTBCCCCCEEEECCSCSSSS--CCTTCEEEEEEEEBSSCCCEEEEEEETTTTE--EEEEEEESSCCCCCSCE
T ss_pred -eEEEEcCCCccccCCEeeeCCCCCCCC--CCCCCcEEEEEEEECCCCcEEEEEEeCCCCc--cceEEECCCCCCCCccc
Confidence 2469999999999999999997 5 7899999999999999999999999999998 69999999999999999
Q ss_pred cCcChhhHHHhhc
Q 015522 392 FFVSEEQLEEQAK 404 (405)
Q Consensus 392 ~w~~~~~~~~~~~ 404 (405)
+|+++++|++|++
T Consensus 517 ~wv~~~~l~~q~~ 529 (529)
T 3npe_A 517 TFITGQELEAQAA 529 (529)
T ss_dssp EEEEHHHHTTCCC
T ss_pred cccCHHHhhhhhC
Confidence 9999999999864
No 2
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*
Probab=100.00 E-value=5.3e-92 Score=728.27 Aligned_cols=344 Identities=26% Similarity=0.410 Sum_probs=308.1
Q ss_pred CCCcceeEEEEECCEEEEEEcCCccEEEEcCCCCCccccceecccccc-C-CCCCCCceeeCC------CCcEEEEEecC
Q 015522 32 GNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRL-Q-HSFTAHPKVDPY------TGEMFTFGYAH 103 (405)
Q Consensus 32 ~~n~ANt~V~~~~g~llAl~E~g~P~~ld~~~~~tLeT~g~~d~~~~l-~-~~ftAHP~~Dp~------tG~~~~fg~~~ 103 (405)
.+|+|||||++|+||||||||+|.||++|| .||||+|.+||+|+| + ..||||||+||. ||||+|||++.
T Consensus 130 ~~~~aNT~v~~~~g~llAl~E~~~p~~ldp---~tLeT~G~~d~~g~l~~~~~~tAHPk~Dp~~~~~~gtgel~~fg~~~ 206 (490)
T 2biw_A 130 LKNIANTNITYWGDRLLALWEGGQPHRLEP---SNLATIGLDDLGGILAEGQPLSAHPRIDPASTFDGGQPCYVTFSIKS 206 (490)
T ss_dssp BCCCCCSEEEEETTEEEEECTTSCCEEECT---TTCCEEEECCTTTTSCTTCCCCSCCEEESSCTTTTTCCEEEEEEEEE
T ss_pred cCCCCEEEEEEECCEEEEEEcCCCCEeccc---ccccEeeeeccCCcccCCcccccCceECccccccCCCCeEEEEEecC
Confidence 369999999999999999999999999999 699999999999999 5 489999999999 99999999987
Q ss_pred CCCe-EEEEEEcCCCCeeeeEEEEeCCCcceeeeeecCCEEEEEeCCcccChHHHhhcC---CceeEEcCCCCcEEEEEe
Q 015522 104 TPPY-ITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKEN---KLIFTFDDTKKARFGILP 179 (405)
Q Consensus 104 ~~~~-~~~~~~~~~g~~~~~~~~~~p~~~~iHdf~vTeny~V~~~~P~~~~~~~~l~~~---~~~~~w~~~~~t~~~vip 179 (405)
+++. ++|++++++|++.+..++++|.++|||||+|||||+||+++|+.+|+.++++++ ..+++|+|++++||+|||
T Consensus 207 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~HDfaiTeny~V~~~~P~~~~~~~~~~g~~~~~~~~~~~p~~~tr~~Vip 286 (490)
T 2biw_A 207 SLSSTLTLLELDPQGKLLRQKTETFPGFAFIHDFAITPHYAIFLQNNVTLNGLPYLFGLRGAGECVQFHPDKPAQIILVP 286 (490)
T ss_dssp SSEEEEEEEEECTTSCEEEEEEEEEESCCCCCCCEECSSEEEEEECCEEECCHHHHTTSSCGGGGEEECTTSCEEEEEEE
T ss_pred CCCcEEEEEEECCCCCEEeeEEEeCCCCceEeeeeccCCEEEEEeCCeEEcHHHHhhccCCccceeEeCCCCCcEEEEEE
Confidence 6554 889999999999998899999999999999999999999999999999988643 357999999999999999
Q ss_pred CCCCCCCceEEEEcCCeeEEecccceecCCeEEEEEEecCCCCc-cccchhhh-hhcccccccEEEEEEeCCCCCeeEEE
Q 015522 180 RYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDL-DMVNGAVK-EKLENFSNELYEMRFNLKTGLASQKR 257 (405)
Q Consensus 180 R~~~~~~~v~~~~~~~~f~fH~~NAyE~~~~ivvd~~~~~~~~~-~~~~~~~~-~~~~~~~~~l~R~~idl~~g~~~~~~ 257 (405)
|+ + +.++||++|+||+||++||||++|+||+|+|+|++.++ ........ .....+.++|+||+|||++|+++++.
T Consensus 287 R~-~--~~v~~f~~~~~f~fH~~NA~Ee~~~Iv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~i~l~~g~v~~~~ 363 (490)
T 2biw_A 287 RD-G--GEIKRIPVQAGFVFHHANAFEENGKIILDSICYNSLPQVDTDGDFRSTNFDNLDPGQLWRFTIDPAAATVEKQL 363 (490)
T ss_dssp TT-S--CCCEEEEECCCEEEEEEEEEEETTEEEEEEEEESCCCCCCTTCCGGGCCGGGSCCCEEEEEEEETTTTEEEEEE
T ss_pred CC-C--CccEEEecCCCeEEecccceecCCeEEEEEeccCCcccccccccccccccccCCCceEEEEEEECCCCceEEEe
Confidence 99 2 46899999999999999999999999999999987653 11111100 11234568999999999999999999
Q ss_pred cccCCccCcccCCCCCCCCCceEEEeecC---CCCCcCeEEEEEccCCCCCccceeeecCceeeEEEcCCCccccceEEe
Q 015522 258 LSASAVDFPRVNECYTGRKQRYVYGTILD---SIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFV 334 (405)
Q Consensus 258 L~~~~~EfP~In~~~~g~~yry~Y~~~~~---~~~~~~~l~K~D~~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFV 334 (405)
|++.++|||+||++|.||+|||+|+++.+ .+..+++|+|+|++| |+ .+.|++++|+++|||+||
T Consensus 364 l~~~~~EfP~In~~~~G~~~Ry~Y~~~~~~~~~~~~~~~l~K~D~~t----g~---------~~~~~~g~g~~~~EPvFV 430 (490)
T 2biw_A 364 MVSRCCEFPVVHPQQVGRPYRYVYMGAAHHSTGNAPLQAILKVDLES----GT---------ETLRSFAPHGFAGEPIFV 430 (490)
T ss_dssp EECSCEEEEECCGGGTTSCCSEEEEEECSSSSSCCCCCEEEEEETTT----TE---------EEEEECTTTEECCCCEEE
T ss_pred ccCCcccccccChhhCCceeeeEEEEeecCCCCCCCCCeEEEEECCC----CC---------EEEEECCCCccccCCEEe
Confidence 99999999999999999999999999875 345689999999997 44 246889999999999999
Q ss_pred eCCCCCCCCCCCeEEEEEEEeCCCCceEEEEEeCCCCCCCceEEEEcCCcCCCCCCccCcCh
Q 015522 335 PREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSE 396 (405)
Q Consensus 335 Prp~~~~~~EDDG~LLs~v~d~~~~~s~LlILDA~~l~~gpvAr~~Lp~~iP~gfHG~w~~~ 396 (405)
|||++ ++|||||||++|+|.++++|+|+||||++|++|||||++||++||+||||+|+++
T Consensus 431 Prp~~--~~EDDG~ll~~V~d~~~~~S~l~IlDA~~~~~~pvArv~lP~rvP~GfHG~wv~~ 490 (490)
T 2biw_A 431 PRPGG--VAEDDGWLLCLIYKADLHRSELVILDAQDITAPAIATLKLKHHIPYPLHGSWAQT 490 (490)
T ss_dssp ECTTC--CSTTCEEEEEEEEETTTTEEEEEEEETTCTTSCCSEEEECSSCCCCCCCEEEEEC
T ss_pred cCCCC--CCCCCcEEEEEEEeCCCCceeEEEEccCCCCcCceEEEeCCCcCCCCccccccCC
Confidence 99975 7999999999999999999999999999999999999999999999999999863
No 3
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A
Probab=100.00 E-value=6.1e-86 Score=689.34 Aligned_cols=341 Identities=19% Similarity=0.280 Sum_probs=274.9
Q ss_pred CCCcceeEEEEECCEEEEEEcCCccEEEEcCCCCCccccceeccccccC-CCCCCCceeeCCCCcEEEEEecCCC---Ce
Q 015522 32 GNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQ-HSFTAHPKVDPYTGEMFTFGYAHTP---PY 107 (405)
Q Consensus 32 ~~n~ANt~V~~~~g~llAl~E~g~P~~ld~~~~~tLeT~g~~d~~~~l~-~~ftAHP~~Dp~tG~~~~fg~~~~~---~~ 107 (405)
.+|+|||||++|+||||||||++.||++|| +||||+|.+||+|.|+ ..||||||+|| |||+||||++.++ +.
T Consensus 128 ~~~~ANt~v~~~~g~LlAl~E~~~p~~iDp---~tLeT~G~~d~~g~l~~~~~tAHPk~Dp-tGel~~fg~~~~~~~~~~ 203 (533)
T 3kvc_A 128 VTDNALVNIYPVGEDYYACTETNFITKVNP---ETLETIKQVDLCNYVSVNGATAHPHIEN-DGTVYNIGNCFGKNFSIA 203 (533)
T ss_dssp CCCCCCSEEEEETTEEEEECSSSEEEEECT---TTCCEEEEEEHHHHSSCSCCCSCCEECT-TSCEEEEEEECC---CCE
T ss_pred CCCCCEEEEEEECCEEEEEEcCCcCEEeCh---HHcccccccccCCccCCCccCCCCccCC-CCCEEEEeeccCCCCCcE
Confidence 469999999999999999999999999998 6999999999999997 67999999999 9999999998764 23
Q ss_pred EEEEEEcCC-----CCeee-eEEEEe-----CCCcceeeeeecCCEEEEEeCCcccChHHHhhc----CC---ceeEEcC
Q 015522 108 ITYRVISKD-----GFMHD-PVPITV-----SDPIMMHDFAITENYAIFMDLPLYFRPKEMVKE----NK---LIFTFDD 169 (405)
Q Consensus 108 ~~~~~~~~~-----g~~~~-~~~~~~-----p~~~~iHdf~vTeny~V~~~~P~~~~~~~~l~~----~~---~~~~w~~ 169 (405)
..++.++++ +.+.+ .+.+++ +.|+|||||+|||||+||+++|+++|+.+|+++ ++ .+++|+|
T Consensus 204 y~v~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~p~~iHDFaiTeny~Vf~~~P~~~~~~~~~~g~~~~~~~~~~~~~~~p 283 (533)
T 3kvc_A 204 YNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFESNE 283 (533)
T ss_dssp EEEEEECCCCTTCCCGGGGCEEEEEEECSSTTCCBCCCCCEECSSEEEEEECSEEEC-----------CCCSGGGEEECS
T ss_pred EEEEEECccccccccccccceeEEeeccccCCCCceeeeeeecCCEEEEEeCCeEEcHHHHhhcccccCCChHHheeecC
Confidence 333334433 22222 222333 579999999999999999999999999999864 33 3799999
Q ss_pred CCCcEEEEEeCCCCCCCceEEEEcCCeeEEecccceecCCeEEEEEEecCC-CCc-c-----ccchh--hhh--hccccc
Q 015522 170 TKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDK-PDL-D-----MVNGA--VKE--KLENFS 238 (405)
Q Consensus 170 ~~~t~~~vipR~~~~~~~v~~~~~~~~f~fH~~NAyE~~~~ivvd~~~~~~-~~~-~-----~~~~~--~~~--~~~~~~ 238 (405)
++++||+||||++++ ..++||++++||+||++||||++|+||+|+|+|++ .++ . .+... -.+ ......
T Consensus 284 ~~~tr~~VipR~~~~-~~~~~~~~~~~f~fH~~NA~Ee~~~Iv~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 362 (533)
T 3kvc_A 284 TMGVWLHIADKKRKK-YINNKYRTSPFNLFHHINTYEDHEFLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQ 362 (533)
T ss_dssp SCCEEEEEEETTTTE-EEEEEEEECCEEEEEEEEEEEETTEEEEEEEEEESSSCGGGGCBHHHHTSCHHHHHHHHTTSCE
T ss_pred CCCcEEEEEECCCCC-cccEEEEeCCeeEEeeeeeEEeCCEEEEEEeeeCCchhhhhhhhhhhhcccchhccccccccCC
Confidence 999999999999742 23578999999999999999999999999999987 432 1 11110 000 012356
Q ss_pred ccEEEEEEeCCCC------------------------C--eeEEEccc--C-CccCcccCC-CCCCCCCceEEEeecCCC
Q 015522 239 NELYEMRFNLKTG------------------------L--ASQKRLSA--S-AVDFPRVNE-CYTGRKQRYVYGTILDSI 288 (405)
Q Consensus 239 ~~l~R~~idl~~g------------------------~--~~~~~L~~--~-~~EfP~In~-~~~g~~yry~Y~~~~~~~ 288 (405)
++|+||+||+.++ + ++++.|++ . ++|||+||+ +|.||+|||+|+++.+.
T Consensus 363 ~~l~R~~l~l~~~~~~~~~nl~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~EfP~In~~~~~Gr~~Ry~Y~~~~~~- 441 (533)
T 3kvc_A 363 PEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQINYQKYGGKPYTYAYGLGLNH- 441 (533)
T ss_dssp EEEEEEEEESCCCGGGTTSBCCCCTTCCCEEEECTTSEEEEECEEEECBTTEEEEEEECCHHHHTTSCCCEEEEEEEET-
T ss_pred ceEEEEEEeCCcccccccccccccccccceeeeccCCceeeeeeeeccCCcccccCceECHHHhCCCcccEEEEeccCC-
Confidence 7899999999874 1 34567774 6 899999998 79999999999988653
Q ss_pred CCcCeEEEEEccCCCCCccceeeecCceeeEEEcCCCccccceEEeeCCCCCCCCCCCeEEEEEEEeCCC--CceEEEEE
Q 015522 289 AKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKT--GKSSVNVI 366 (405)
Q Consensus 289 ~~~~~l~K~D~~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~~~EDDG~LLs~v~d~~~--~~s~LlIL 366 (405)
..+++|+|+|++|+ +. ..|.++++++|||||||||++ ++|||||||++|+|..+ ++|+|+||
T Consensus 442 ~~~~~l~K~D~~tg----~~----------~~w~~~~~~~~EPiFVPrp~~--~~EDDG~lLs~V~d~~~~~~~s~LlIL 505 (533)
T 3kvc_A 442 FVPDRLCKLNVKTK----ET----------WVWQEPDSYPSEPIFVSHPDA--LEEDDGVVLSVVVSPGAGQKPAYLLIL 505 (533)
T ss_dssp TEEEEEEEEETTTC----CE----------EEECCTTCBCCCCEEEECTTC--CSTTCEEEEEEEECCSTTSCSEEEEEE
T ss_pred CCCceeEEEEcCCC----CE----------EEEeCCCccccCceeecCCCC--CCCCCcEEEEEEEeCCcCCCccEEEEE
Confidence 56799999999974 31 346799999999999999975 89999999999999985 66799999
Q ss_pred eCCCCCCCceEEEEcCCcCCCCCCccCcCh
Q 015522 367 DAKTMSADPVAVVELPHRVPYGFHAFFVSE 396 (405)
Q Consensus 367 DA~~l~~gpvAr~~Lp~~iP~gfHG~w~~~ 396 (405)
||++|+ +|||++||++||+||||+|+++
T Consensus 506 DA~~l~--~vArv~lP~rvP~GfHG~w~~~ 533 (533)
T 3kvc_A 506 NAKDLS--EVARAEVEINIPVTFHGLFKKS 533 (533)
T ss_dssp ETTTCC--EEEEEEESSCCCCCCEEEEEEC
T ss_pred eCCCCh--hhEEEEeCCCCCCCccccccCC
Confidence 999998 7999999999999999999863
No 4
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=28.19 E-value=4.8e+02 Score=26.30 Aligned_cols=106 Identities=19% Similarity=0.127 Sum_probs=57.5
Q ss_pred EEEEeCCCCCeeEEEcccCCccCcccCCCCCCCCCceEEEeecCCCCCcCeEEEEEccCCCCCccceeeecCceeeEEEc
Q 015522 243 EMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDL 322 (405)
Q Consensus 243 R~~idl~~g~~~~~~L~~~~~EfP~In~~~~g~~yry~Y~~~~~~~~~~~~l~K~D~~t~~~~g~~~~~~~~~~~~~~~~ 322 (405)
-..||+.++++..+.-.....+...+++ .-||+|..+. -+.|..+|+.+. +++. ....
T Consensus 179 V~viD~~t~~v~~~i~~g~~p~~v~~Sp-----DGr~lyv~~~-----dg~V~viD~~~~--t~~~----------v~~i 236 (567)
T 1qks_A 179 IALIDGSTYEIKTVLDTGYAVHISRLSA-----SGRYLFVIGR-----DGKVNMIDLWMK--EPTT----------VAEI 236 (567)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECT-----TSCEEEEEET-----TSEEEEEETTSS--SCCE----------EEEE
T ss_pred EEEEECCCCeEEEEEeCCCCccceEECC-----CCCEEEEEcC-----CCeEEEEECCCC--CCcE----------eEEE
Confidence 3567777777654432222223334444 3468887643 257999999621 1221 1112
Q ss_pred CCCccccceEEeeCCCCCCCC-CCCeEEEEEEEeCCCCceEEEEEeCCCCCCCceEEEEcC
Q 015522 323 GPGRFGSEAVFVPREPGTSSE-EDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELP 382 (405)
Q Consensus 323 ~~~~~~~EPvFVPrp~~~~~~-EDDG~LLs~v~d~~~~~s~LlILDA~~l~~gpvAr~~Lp 382 (405)
..| .+|.-+.=.. -. -|.-||++.-+.. ..+.|+|+.+++ ++.++.+.
T Consensus 237 ~~G---~~P~~ia~s~---~~~pDGk~l~v~n~~~----~~v~ViD~~t~~--~~~~i~~~ 285 (567)
T 1qks_A 237 KIG---SEARSIETSK---MEGWEDKYAIAGAYWP----PQYVIMDGETLE--PKKIQSTR 285 (567)
T ss_dssp ECC---SEEEEEEECC---STTCTTTEEEEEEEET----TEEEEEETTTCC--EEEEEECC
T ss_pred ecC---CCCceeEEcc---ccCCCCCEEEEEEccC----CeEEEEECCCCc--EEEEEecc
Confidence 222 2344332210 00 1334887776653 468899999887 88988865
No 5
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=14.13 E-value=55 Score=18.73 Aligned_cols=10 Identities=50% Similarity=0.803 Sum_probs=7.7
Q ss_pred CCCCCceEEE
Q 015522 273 TGRKQRYVYG 282 (405)
Q Consensus 273 ~g~~yry~Y~ 282 (405)
.|.+|||+|-
T Consensus 11 tG~EYrYile 20 (26)
T 2xpn_B 11 TGEEYRYVLE 20 (26)
T ss_pred CCceEEEEee
Confidence 4778888875
No 6
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=13.76 E-value=2.4e+02 Score=25.83 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=28.8
Q ss_pred EEEECCEEEEE-EcCCccEEEEcCCCCCccccceecccccc
Q 015522 40 LVYHHGKLLAL-SEADKPYAVKVLEDGDLQTLGMLDYDKRL 79 (405)
Q Consensus 40 V~~~~g~llAl-~E~g~P~~ld~~~~~tLeT~g~~d~~~~l 79 (405)
+-+.+|+|||- |+++.-+.+|| .|.+-++.+++.+-.
T Consensus 177 Le~~~G~lyan~w~~~~I~vIDp---~tG~V~~~Id~~~L~ 214 (262)
T 3nol_A 177 LEWVDGEIFANVWQTNKIVRIDP---ETGKVTGIIDLNGIL 214 (262)
T ss_dssp EEEETTEEEEEETTSSEEEEECT---TTCBEEEEEECTTGG
T ss_pred eEEECCEEEEEEccCCeEEEEEC---CCCcEEEEEECCcCc
Confidence 45678999977 56776777877 699999999997644
No 7
>4guc_A Protein BA_2500; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: PGE; 1.40A {Bacillus anthracis}
Probab=12.85 E-value=5.3e+02 Score=20.65 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=31.8
Q ss_pred CCCcEEEEEecCCC---CeEEEEEEc----CCCCeeeeEEEEeCCCcceeeeeecCCEEEEEe
Q 015522 92 YTGEMFTFGYAHTP---PYITYRVIS----KDGFMHDPVPITVSDPIMMHDFAITENYAIFMD 147 (405)
Q Consensus 92 ~tG~~~~fg~~~~~---~~~~~~~~~----~~g~~~~~~~~~~p~~~~iHdf~vTeny~V~~~ 147 (405)
+||..+.+....+. ..+-++.+. ++|.+.+-.. |||+..+.+|.+|--
T Consensus 35 ktGdtf~it~~~~~~d~g~~KIyrv~~~~~~~g~L~RYkT--------I~d~~~~~~~~~f~T 89 (120)
T 4guc_A 35 KHGDTFDVTIYTGGKDTGIVKIYQLSGNENDEINLHRYKT--------IYDSGLKHNYGRFVT 89 (120)
T ss_dssp ETTCEEEEEEECCSSBCCEEEEEEECSCTTCSCCEEEEEE--------EECCCCCTTEEEEEE
T ss_pred ccCCEEEEEEEcCCCccceEEEEEEccCCCCCcceEEEEE--------eccCCCcCCeeEEEe
Confidence 48998888875432 235455553 4688877654 478888999887654
No 8
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=12.65 E-value=4.9e+02 Score=25.30 Aligned_cols=86 Identities=21% Similarity=0.089 Sum_probs=0.0
Q ss_pred ceEEEeecCCCCCcCeEEEEEccCCCCCccceeeecCceeeEEEcCCCccccceEEeeCCCCCCCCCCCeEEEEEEEeCC
Q 015522 278 RYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEK 357 (405)
Q Consensus 278 ry~Y~~~~~~~~~~~~l~K~D~~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~~~EDDG~LLs~v~d~~ 357 (405)
+++|-+........+.|..+|..+.+. .....-|..| .-.|=|..+- |.+.-....
T Consensus 85 ~~vyV~n~~~~~~~~~VsVID~~t~~v--------------v~~I~vG~~P-gia~SpDgk~---------lyVan~~~~ 140 (426)
T 3c75_H 85 RRVYIQDPAHFAAITQQFVIDGSTGRI--------------LGMTDGGFLP-HPVAAEDGSF---------FAQASTVFE 140 (426)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEE--------------EEEEEECSSC-EEEECTTSSC---------EEEEEEEEE
T ss_pred CEEEEECCCcCCCCCeEEEEECCCCEE--------------EEEEECCCCC-ceEECCCCCE---------EEEEecccc
Q ss_pred C-----CceEEEEEeCCCCCCCceEEEEcC-------CcCCCCC
Q 015522 358 T-----GKSSVNVIDAKTMSADPVAVVELP-------HRVPYGF 389 (405)
Q Consensus 358 ~-----~~s~LlILDA~~l~~gpvAr~~Lp-------~~iP~gf 389 (405)
. ....+.|+|+++++ .++++.+| ..-|.++
T Consensus 141 ~~~~G~~~~~VsviD~~t~~--vv~~I~v~g~~r~~~g~~P~~~ 182 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFL--PIADIELPDAPRFLVGTYQWMN 182 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGS
T ss_pred ccccCCCCCEEEEEECCCCc--EEEEEECCCccccccCCCcceE
No 9
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=12.03 E-value=3.5e+02 Score=27.85 Aligned_cols=25 Identities=12% Similarity=-0.003 Sum_probs=19.6
Q ss_pred CCCceEEEEEeCCCCCCCceEEEEcCC
Q 015522 357 KTGKSSVNVIDAKTMSADPVAVVELPH 383 (405)
Q Consensus 357 ~~~~s~LlILDA~~l~~gpvAr~~Lp~ 383 (405)
...++.+-++|+.+++ .++++.++.
T Consensus 171 ~~~~~~vtvID~~t~~--v~~qI~Vgg 195 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWE--VAWQVLVSG 195 (595)
T ss_dssp GGEEEEEEEEETTTTE--EEEEEEESS
T ss_pred cccCceEEEEECCCCe--EEEEEEeCC
Confidence 3456789999999876 789998864
No 10
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=11.68 E-value=2e+02 Score=26.30 Aligned_cols=73 Identities=11% Similarity=0.224 Sum_probs=45.2
Q ss_pred eEEEEECCEEEEEE-cCCccEEEEcCCCCCccccceeccccccCCCCCCCceeeCCCCcEEEEEecCCCCeEEEEEEcCC
Q 015522 38 TALVYHHGKLLALS-EADKPYAVKVLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKD 116 (405)
Q Consensus 38 t~V~~~~g~llAl~-E~g~P~~ld~~~~~tLeT~g~~d~~~~l~~~ftAHP~~Dp~tG~~~~fg~~~~~~~~~~~~~~~~ 116 (405)
..+...+++||.++ ..+.-+.+|+ .||+.++.+.+.+. .-.+| ++.+.+|. +- +.. .++++|++
T Consensus 90 eGit~~g~~ly~ltw~~~~v~v~D~---~t~~~~~ti~~~~e-G~glt------~dg~~L~~-Sd--Gs~--~i~~iDp~ 154 (262)
T 3nol_A 90 EGISDWKDKIVGLTWKNGLGFVWNI---RNLRQVRSFNYDGE-GWGLT------HNDQYLIM-SD--GTP--VLRFLDPE 154 (262)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEET---TTCCEEEEEECSSC-CCCEE------ECSSCEEE-CC--SSS--EEEEECTT
T ss_pred eEEEEeCCEEEEEEeeCCEEEEEEC---ccCcEEEEEECCCC-ceEEe------cCCCEEEE-EC--CCC--eEEEEcCC
Confidence 34667899999885 4677899998 69999999988542 11222 22345543 22 222 36777765
Q ss_pred -CCeeeeEEE
Q 015522 117 -GFMHDPVPI 125 (405)
Q Consensus 117 -g~~~~~~~~ 125 (405)
.++.+.+.+
T Consensus 155 T~~v~~~I~V 164 (262)
T 3nol_A 155 SLTPVRTITV 164 (262)
T ss_dssp TCSEEEEEEC
T ss_pred CCeEEEEEEe
Confidence 566554443
Done!