Query 015523
Match_columns 405
No_of_seqs 256 out of 2357
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:06:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2764 Putative transcription 100.0 8.7E-35 1.9E-39 248.8 15.4 241 17-292 5-247 (247)
2 TIGR01383 not_thiJ DJ-1 family 100.0 9.2E-34 2E-38 248.0 20.3 175 222-396 1-178 (179)
3 cd03137 GATase1_AraC_1 AraC tr 100.0 5E-33 1.1E-37 245.1 18.6 175 223-401 1-187 (187)
4 cd03136 GATase1_AraC_ArgR_like 100.0 6.3E-33 1.4E-37 244.0 18.9 174 223-401 1-185 (185)
5 TIGR01383 not_thiJ DJ-1 family 100.0 6.9E-33 1.5E-37 242.5 18.5 175 19-194 1-178 (179)
6 cd03139 GATase1_PfpI_2 Type 1 100.0 5E-33 1.1E-37 244.3 17.2 175 223-401 1-183 (183)
7 cd03138 GATase1_AraC_2 AraC tr 100.0 2.7E-32 5.9E-37 242.0 19.4 176 223-401 1-195 (195)
8 cd03135 GATase1_DJ-1 Type 1 gl 100.0 6.5E-32 1.4E-36 232.7 18.8 162 223-385 1-163 (163)
9 cd03139 GATase1_PfpI_2 Type 1 100.0 1.5E-32 3.2E-37 241.3 14.3 175 20-199 1-183 (183)
10 PRK11574 oxidative-stress-resi 100.0 3E-31 6.4E-36 235.4 21.7 183 220-402 2-189 (196)
11 cd03136 GATase1_AraC_ArgR_like 100.0 4.5E-32 9.8E-37 238.5 15.8 174 20-199 1-185 (185)
12 cd03137 GATase1_AraC_1 AraC tr 100.0 8.7E-32 1.9E-36 237.2 15.9 174 20-198 1-186 (187)
13 cd03138 GATase1_AraC_2 AraC tr 100.0 1.4E-31 3.1E-36 237.4 15.9 176 20-199 1-195 (195)
14 COG4977 Transcriptional regula 100.0 5.9E-31 1.3E-35 244.1 18.7 184 218-405 8-202 (328)
15 COG4977 Transcriptional regula 100.0 6.5E-31 1.4E-35 243.8 18.9 214 15-246 8-232 (328)
16 PRK11574 oxidative-stress-resi 100.0 1.9E-30 4.1E-35 230.3 20.4 185 17-201 2-190 (196)
17 cd03135 GATase1_DJ-1 Type 1 gl 100.0 8.2E-31 1.8E-35 225.8 17.3 162 20-183 1-163 (163)
18 TIGR01382 PfpI intracellular p 100.0 1E-30 2.2E-35 225.9 17.8 162 222-385 1-165 (166)
19 PRK09393 ftrA transcriptional 100.0 2.6E-30 5.6E-35 247.0 20.5 182 218-404 7-200 (322)
20 cd03134 GATase1_PfpI_like A ty 100.0 1.7E-30 3.8E-35 224.2 16.7 160 222-383 1-164 (165)
21 TIGR01382 PfpI intracellular p 100.0 2.4E-30 5.2E-35 223.6 15.0 162 19-183 1-165 (166)
22 cd03134 GATase1_PfpI_like A ty 100.0 1.6E-30 3.4E-35 224.5 13.7 160 19-181 1-164 (165)
23 PF13278 DUF4066: Putative ami 100.0 8.4E-30 1.8E-34 220.1 17.2 154 226-383 1-166 (166)
24 PRK09393 ftrA transcriptional 100.0 9.3E-30 2E-34 243.1 18.2 187 11-203 3-201 (322)
25 KOG2764 Putative transcription 100.0 7.8E-30 1.7E-34 218.4 13.8 183 220-402 5-190 (247)
26 cd03169 GATase1_PfpI_1 Type 1 100.0 5.5E-29 1.2E-33 217.8 17.8 163 222-385 1-180 (180)
27 PF13278 DUF4066: Putative ami 100.0 1.8E-29 3.9E-34 218.1 13.8 154 23-181 1-166 (166)
28 cd03140 GATase1_PfpI_3 Type 1 100.0 7.1E-29 1.5E-33 215.0 15.7 160 223-386 1-167 (170)
29 cd03169 GATase1_PfpI_1 Type 1 100.0 1.1E-28 2.5E-33 215.8 15.3 163 19-183 1-180 (180)
30 cd03140 GATase1_PfpI_3 Type 1 100.0 3.9E-28 8.3E-33 210.4 14.5 160 20-184 1-167 (170)
31 cd03147 GATase1_Ydr533c_like T 99.9 8E-27 1.7E-31 210.0 13.8 157 229-385 20-231 (231)
32 cd03141 GATase1_Hsp31_like Typ 99.9 2.5E-26 5.4E-31 206.8 13.1 156 229-385 18-221 (221)
33 PRK04155 chaperone protein Hch 99.9 1.3E-25 2.8E-30 207.3 17.4 166 220-386 49-282 (287)
34 COG0693 ThiJ Putative intracel 99.9 3.6E-25 7.9E-30 195.1 16.4 170 220-389 2-186 (188)
35 cd03148 GATase1_EcHsp31_like T 99.9 4E-25 8.7E-30 199.2 14.0 159 227-386 19-232 (232)
36 PF01965 DJ-1_PfpI: DJ-1/PfpI 99.9 5.3E-25 1.2E-29 185.9 13.5 137 249-385 1-146 (147)
37 cd03147 GATase1_Ydr533c_like T 99.9 3.8E-25 8.2E-30 199.2 11.3 157 26-183 20-231 (231)
38 cd03141 GATase1_Hsp31_like Typ 99.9 5.1E-25 1.1E-29 198.3 10.3 157 25-183 17-221 (221)
39 PRK04155 chaperone protein Hch 99.9 4.1E-24 8.8E-29 197.4 14.0 166 17-184 49-282 (287)
40 COG0693 ThiJ Putative intracel 99.9 1.2E-23 2.7E-28 185.3 16.0 170 17-187 2-186 (188)
41 PF01965 DJ-1_PfpI: DJ-1/PfpI 99.9 4.6E-24 9.9E-29 180.3 10.8 137 46-183 1-146 (147)
42 PRK11780 isoprenoid biosynthes 99.9 1.3E-22 2.8E-27 180.7 17.6 150 220-370 1-191 (217)
43 cd03148 GATase1_EcHsp31_like T 99.9 1.9E-23 4.1E-28 188.3 11.1 160 22-183 17-231 (232)
44 cd03133 GATase1_ES1 Type 1 glu 99.9 4.7E-22 1E-26 175.8 14.3 153 228-381 11-202 (213)
45 cd03132 GATase1_catalase Type 99.9 2.9E-21 6.3E-26 162.3 16.1 113 221-334 2-114 (142)
46 PRK11780 isoprenoid biosynthes 99.9 8.9E-22 1.9E-26 175.3 12.5 153 17-171 1-194 (217)
47 cd03132 GATase1_catalase Type 99.9 1.6E-20 3.4E-25 157.8 14.9 114 17-132 1-114 (142)
48 cd03133 GATase1_ES1 Type 1 glu 99.9 3.7E-21 8E-26 170.1 11.1 152 25-178 11-201 (213)
49 PRK11249 katE hydroperoxidase 99.7 2.4E-16 5.2E-21 160.8 17.8 151 184-335 547-711 (752)
50 PRK11249 katE hydroperoxidase 99.7 1E-15 2.2E-20 156.3 14.1 117 15-133 595-711 (752)
51 PRK03619 phosphoribosylformylg 99.2 1.4E-10 3.1E-15 104.1 12.5 95 221-338 1-102 (219)
52 cd01740 GATase1_FGAR_AT Type 1 99.2 8.6E-11 1.9E-15 107.0 10.7 128 223-369 1-136 (238)
53 PRK01175 phosphoribosylformylg 99.2 1.5E-10 3.2E-15 106.0 11.1 99 220-336 3-110 (261)
54 cd01740 GATase1_FGAR_AT Type 1 99.1 6.8E-10 1.5E-14 101.1 10.9 128 20-167 1-136 (238)
55 PRK03619 phosphoribosylformylg 99.1 1.5E-09 3.2E-14 97.5 11.4 94 18-135 1-101 (219)
56 PRK01175 phosphoribosylformylg 99.0 2.3E-09 5E-14 98.2 10.7 100 17-135 3-111 (261)
57 TIGR01737 FGAM_synth_I phospho 99.0 6.2E-09 1.3E-13 94.1 12.4 94 221-337 1-100 (227)
58 COG0047 PurL Phosphoribosylfor 98.9 1.7E-08 3.8E-13 88.0 11.0 95 220-336 2-102 (231)
59 cd01653 GATase1 Type 1 glutami 98.9 2.3E-08 4.9E-13 78.7 10.7 92 223-328 1-92 (115)
60 TIGR01737 FGAM_synth_I phospho 98.8 3.8E-08 8.3E-13 89.0 11.4 93 18-134 1-99 (227)
61 COG0047 PurL Phosphoribosylfor 98.8 3.9E-08 8.4E-13 85.8 9.7 95 17-134 2-102 (231)
62 COG3155 ElbB Uncharacterized p 98.8 5.7E-08 1.2E-12 79.4 9.6 165 17-188 1-207 (217)
63 COG3155 ElbB Uncharacterized p 98.8 8.7E-08 1.9E-12 78.3 10.3 148 220-369 1-190 (217)
64 PRK13527 glutamine amidotransf 98.7 8.1E-08 1.8E-12 85.3 10.3 92 221-331 1-93 (200)
65 cd01653 GATase1 Type 1 glutami 98.7 2.2E-07 4.8E-12 73.0 10.4 92 20-126 1-92 (115)
66 PRK13526 glutamine amidotransf 98.6 1.8E-07 3.9E-12 80.1 8.1 89 221-336 3-97 (179)
67 cd03128 GAT_1 Type 1 glutamine 98.6 2.1E-07 4.6E-12 69.8 7.1 92 223-328 1-92 (92)
68 PRK13527 glutamine amidotransf 98.6 2.9E-07 6.4E-12 81.7 9.0 92 18-129 1-93 (200)
69 PF13507 GATase_5: CobB/CobQ-l 98.5 2.6E-07 5.6E-12 84.5 8.4 98 221-336 2-111 (259)
70 TIGR03800 PLP_synth_Pdx2 pyrid 98.5 3.1E-07 6.6E-12 80.2 8.0 85 222-331 1-86 (184)
71 cd03128 GAT_1 Type 1 glutamine 98.4 1.2E-06 2.7E-11 65.5 8.2 89 20-122 1-89 (92)
72 PRK13526 glutamine amidotransf 98.4 1.2E-06 2.6E-11 75.2 8.4 83 18-128 3-87 (179)
73 TIGR03800 PLP_synth_Pdx2 pyrid 98.3 1.2E-06 2.6E-11 76.5 7.1 85 19-129 1-86 (184)
74 cd03130 GATase1_CobB Type 1 gl 98.3 1.9E-06 4.2E-11 76.2 8.5 75 239-332 16-92 (198)
75 PRK13525 glutamine amidotransf 98.3 4.2E-06 9E-11 73.5 9.6 87 220-331 1-88 (189)
76 PF13507 GATase_5: CobB/CobQ-l 98.2 3.9E-06 8.5E-11 76.8 8.5 99 18-135 2-112 (259)
77 PLN02832 glutamine amidotransf 98.2 7.1E-06 1.5E-10 74.3 8.6 87 220-331 1-88 (248)
78 PRK13143 hisH imidazole glycer 98.1 1.1E-05 2.5E-10 71.5 9.1 87 221-331 1-87 (200)
79 PRK08250 glutamine amidotransf 98.1 3.3E-05 7.2E-10 70.2 11.0 94 221-331 1-100 (235)
80 PRK01077 cobyrinic acid a,c-di 98.1 2.3E-05 5E-10 78.3 10.7 92 220-331 245-338 (451)
81 cd03130 GATase1_CobB Type 1 gl 98.1 1.3E-05 2.7E-10 71.0 7.8 76 36-131 16-93 (198)
82 PRK07053 glutamine amidotransf 98.1 3E-05 6.4E-10 70.4 10.4 96 219-331 1-99 (234)
83 PLN02832 glutamine amidotransf 98.1 1.4E-05 3E-10 72.4 7.9 88 17-130 1-89 (248)
84 PRK13525 glutamine amidotransf 98.0 1.8E-05 4E-10 69.4 8.3 86 17-128 1-87 (189)
85 TIGR01857 FGAM-synthase phosph 98.0 3E-05 6.4E-10 84.7 10.5 108 219-337 976-1096(1239)
86 cd01749 GATase1_PB Glutamine A 98.0 3.1E-05 6.7E-10 67.7 8.0 84 223-331 1-85 (183)
87 cd01750 GATase1_CobQ Type 1 gl 97.9 4.2E-05 9.2E-10 67.5 8.7 86 223-332 1-89 (194)
88 TIGR01735 FGAM_synt phosphorib 97.9 0.00015 3.3E-09 80.3 13.8 102 218-337 1053-1167(1310)
89 PLN03206 phosphoribosylformylg 97.9 0.00011 2.3E-09 81.1 12.5 101 219-337 1036-1148(1307)
90 PRK13143 hisH imidazole glycer 97.9 3.8E-05 8.2E-10 68.1 7.2 87 18-129 1-87 (200)
91 PRK08250 glutamine amidotransf 97.9 9.2E-05 2E-09 67.3 9.8 94 18-129 1-100 (235)
92 COG0311 PDX2 Predicted glutami 97.9 2.9E-05 6.3E-10 65.7 5.7 85 18-128 1-87 (194)
93 cd01741 GATase1_1 Subgroup of 97.9 8E-05 1.7E-09 65.4 8.9 92 222-331 1-97 (188)
94 COG0311 PDX2 Predicted glutami 97.8 4.5E-05 9.8E-10 64.5 6.7 85 221-330 1-87 (194)
95 PRK01077 cobyrinic acid a,c-di 97.8 8.9E-05 1.9E-09 74.1 10.1 90 18-128 246-337 (451)
96 TIGR01857 FGAM-synthase phosph 97.8 0.0001 2.3E-09 80.5 10.3 107 16-135 976-1096(1239)
97 PRK05297 phosphoribosylformylg 97.8 0.00022 4.8E-09 79.3 12.3 100 219-336 1034-1146(1290)
98 cd01750 GATase1_CobQ Type 1 gl 97.7 0.00011 2.5E-09 64.7 8.0 87 20-130 1-89 (194)
99 PRK07053 glutamine amidotransf 97.7 0.00017 3.7E-09 65.5 9.2 95 17-129 2-99 (234)
100 cd01749 GATase1_PB Glutamine A 97.7 8.9E-05 1.9E-09 64.8 7.1 84 20-129 1-85 (183)
101 CHL00188 hisH imidazole glycer 97.7 0.00014 3E-09 64.8 8.4 87 220-331 1-90 (210)
102 PF07685 GATase_3: CobB/CobQ-l 97.7 7.1E-05 1.5E-09 63.7 5.5 53 279-331 4-58 (158)
103 PRK06490 glutamine amidotransf 97.6 0.00037 8.1E-09 63.5 10.1 96 219-331 6-102 (239)
104 PHA03366 FGAM-synthase; Provis 97.6 0.00052 1.1E-08 76.3 12.3 98 219-335 1027-1137(1304)
105 PRK13146 hisH imidazole glycer 97.6 0.00049 1.1E-08 61.4 9.8 91 220-332 1-94 (209)
106 PRK13141 hisH imidazole glycer 97.6 0.00024 5.2E-09 63.3 7.7 85 223-331 2-88 (205)
107 TIGR00379 cobB cobyrinic acid 97.6 0.00042 9.1E-09 69.3 10.2 92 220-331 244-337 (449)
108 cd01741 GATase1_1 Subgroup of 97.6 0.00035 7.5E-09 61.3 8.6 92 19-129 1-97 (188)
109 TIGR01739 tegu_FGAM_synt herpe 97.6 0.00062 1.3E-08 75.3 12.2 99 219-336 928-1039(1202)
110 PRK05665 amidotransferase; Pro 97.5 0.0011 2.3E-08 60.5 11.3 51 281-331 56-107 (240)
111 cd01744 GATase1_CPSase Small c 97.5 0.00043 9.4E-09 60.2 8.4 75 238-331 11-85 (178)
112 PLN03206 phosphoribosylformylg 97.5 0.0005 1.1E-08 75.9 10.6 103 15-136 1035-1149(1307)
113 TIGR01735 FGAM_synt phosphorib 97.4 0.00054 1.2E-08 76.1 9.5 101 16-135 1054-1167(1310)
114 PRK06895 putative anthranilate 97.4 0.00076 1.7E-08 59.3 8.8 87 221-331 2-88 (190)
115 COG1797 CobB Cobyrinic acid a, 97.4 0.0024 5.2E-08 61.7 12.5 144 162-331 190-339 (451)
116 CHL00188 hisH imidazole glycer 97.4 0.0005 1.1E-08 61.3 7.5 87 17-129 1-90 (210)
117 PRK05297 phosphoribosylformylg 97.3 0.0011 2.3E-08 74.0 10.4 100 16-134 1034-1146(1290)
118 PRK09065 glutamine amidotransf 97.3 0.002 4.3E-08 58.7 10.1 96 220-331 1-104 (237)
119 COG1797 CobB Cobyrinic acid a, 97.3 0.0013 2.8E-08 63.6 9.1 91 18-128 246-338 (451)
120 TIGR00379 cobB cobyrinic acid 97.2 0.0019 4.2E-08 64.5 9.7 91 18-129 245-337 (449)
121 PF07685 GATase_3: CobB/CobQ-l 97.2 0.00051 1.1E-08 58.5 4.8 51 78-129 6-58 (158)
122 PRK13141 hisH imidazole glycer 97.2 0.00085 1.8E-08 59.8 6.4 85 20-129 2-88 (205)
123 PRK05665 amidotransferase; Pro 97.2 0.0035 7.5E-08 57.1 10.5 50 79-129 57-107 (240)
124 PF01174 SNO: SNO glutamine am 97.1 0.00054 1.2E-08 58.7 4.4 50 281-330 32-83 (188)
125 PHA03366 FGAM-synthase; Provis 97.1 0.0034 7.5E-08 70.0 11.5 100 15-134 1026-1138(1304)
126 KOG3210 Imidazoleglycerol-phos 97.1 0.0012 2.6E-08 54.7 6.0 98 10-127 4-105 (226)
127 cd01748 GATase1_IGP_Synthase T 97.1 0.00073 1.6E-08 59.8 5.1 74 237-331 12-87 (198)
128 PRK00784 cobyric acid synthase 97.1 0.0019 4E-08 65.4 8.6 87 220-331 251-341 (488)
129 PF01174 SNO: SNO glutamine am 97.1 0.0018 3.9E-08 55.6 6.9 49 79-128 33-83 (188)
130 PRK13181 hisH imidazole glycer 97.0 0.0032 7E-08 55.7 8.5 85 223-331 2-88 (199)
131 PRK09065 glutamine amidotransf 97.0 0.0027 5.9E-08 57.8 8.0 95 17-128 1-103 (237)
132 PRK07567 glutamine amidotransf 97.0 0.0035 7.7E-08 57.2 8.6 97 220-331 1-109 (242)
133 PRK07765 para-aminobenzoate sy 97.0 0.003 6.4E-08 56.6 7.9 79 237-331 14-92 (214)
134 PRK13146 hisH imidazole glycer 97.0 0.0033 7.2E-08 56.1 8.2 90 17-131 1-95 (209)
135 PRK06490 glutamine amidotransf 97.0 0.0028 6E-08 57.8 7.8 96 16-129 6-102 (239)
136 PRK13170 hisH imidazole glycer 97.0 0.0036 7.9E-08 55.2 8.2 83 221-331 1-86 (196)
137 PRK00784 cobyric acid synthase 96.9 0.0027 5.9E-08 64.2 8.2 89 17-130 251-342 (488)
138 PRK06895 putative anthranilate 96.9 0.003 6.5E-08 55.5 7.3 87 18-129 2-88 (190)
139 TIGR00888 guaA_Nterm GMP synth 96.9 0.003 6.5E-08 55.4 7.2 76 236-331 11-86 (188)
140 PLN02617 imidazole glycerol ph 96.9 0.0086 1.9E-07 60.8 11.1 89 219-331 5-95 (538)
141 COG0118 HisH Glutamine amidotr 96.9 0.0041 8.8E-08 53.9 7.4 88 220-332 1-91 (204)
142 TIGR01739 tegu_FGAM_synt herpe 96.9 0.0061 1.3E-07 67.7 10.7 99 16-134 928-1039(1202)
143 PRK13896 cobyrinic acid a,c-di 96.9 0.0032 7E-08 62.2 7.6 89 221-331 234-324 (433)
144 KOG3210 Imidazoleglycerol-phos 96.8 0.0049 1.1E-07 51.2 7.3 96 218-330 9-106 (226)
145 cd01748 GATase1_IGP_Synthase T 96.8 0.0025 5.4E-08 56.4 6.1 77 30-129 8-87 (198)
146 cd01744 GATase1_CPSase Small c 96.8 0.0037 8.1E-08 54.3 6.9 74 35-128 11-84 (178)
147 PRK12564 carbamoyl phosphate s 96.8 0.009 2E-07 57.6 10.0 88 220-331 177-264 (360)
148 TIGR01855 IMP_synth_hisH imida 96.8 0.0037 8.1E-08 55.2 6.7 74 236-331 11-87 (196)
149 cd03146 GAT1_Peptidase_E Type 96.8 0.0063 1.4E-07 54.4 8.3 96 219-331 30-130 (212)
150 COG0518 GuaA GMP synthase - Gl 96.7 0.016 3.5E-07 51.0 10.4 55 276-331 39-95 (198)
151 PRK08007 para-aminobenzoate sy 96.7 0.0053 1.1E-07 53.8 7.2 87 225-331 2-88 (187)
152 cd03144 GATase1_ScBLP_like Typ 96.7 0.0053 1.1E-07 48.7 6.4 88 222-328 1-90 (114)
153 PRK13142 hisH imidazole glycer 96.7 0.0086 1.9E-07 52.4 8.3 84 223-332 2-87 (192)
154 PRK06774 para-aminobenzoate sy 96.7 0.007 1.5E-07 53.2 7.9 87 225-331 2-88 (191)
155 TIGR00566 trpG_papA glutamine 96.7 0.0067 1.4E-07 53.2 7.7 76 237-331 13-88 (188)
156 PRK05380 pyrG CTP synthetase; 96.7 0.01 2.2E-07 59.4 9.5 227 78-330 131-387 (533)
157 cd03144 GATase1_ScBLP_like Typ 96.7 0.0064 1.4E-07 48.3 6.5 88 19-127 1-90 (114)
158 PRK05670 anthranilate synthase 96.6 0.0077 1.7E-07 52.8 7.6 80 233-331 9-88 (189)
159 COG0118 HisH Glutamine amidotr 96.6 0.0093 2E-07 51.7 7.6 88 17-130 1-91 (204)
160 cd01743 GATase1_Anthranilate_S 96.5 0.011 2.3E-07 51.7 7.5 75 238-331 13-87 (184)
161 PF09825 BPL_N: Biotin-protein 96.5 0.017 3.6E-07 55.6 9.4 94 221-330 1-97 (367)
162 PRK05282 (alpha)-aspartyl dipe 96.4 0.019 4E-07 52.0 8.9 94 220-332 31-130 (233)
163 PRK08857 para-aminobenzoate sy 96.4 0.012 2.6E-07 51.8 7.6 87 225-331 2-88 (193)
164 PRK06278 cobyrinic acid a,c-di 96.4 0.0082 1.8E-07 60.0 7.1 46 281-331 35-81 (476)
165 cd01742 GATase1_GMP_Synthase T 96.4 0.012 2.6E-07 51.2 7.3 75 237-331 12-86 (181)
166 PRK14004 hisH imidazole glycer 96.4 0.0069 1.5E-07 54.0 5.7 84 223-331 2-88 (210)
167 CHL00101 trpG anthranilate syn 96.4 0.015 3.2E-07 51.1 7.8 76 237-331 13-88 (190)
168 PRK07567 glutamine amidotransf 96.4 0.015 3.2E-07 53.2 7.9 96 18-129 2-109 (242)
169 COG0518 GuaA GMP synthase - Gl 96.3 0.029 6.3E-07 49.4 9.4 89 19-128 3-94 (198)
170 PRK07765 para-aminobenzoate sy 96.3 0.016 3.4E-07 52.0 7.8 78 34-128 14-91 (214)
171 PRK05637 anthranilate synthase 96.3 0.019 4E-07 51.2 8.1 88 220-331 1-89 (208)
172 PF00117 GATase: Glutamine ami 96.2 0.0074 1.6E-07 53.0 5.2 78 237-331 11-88 (192)
173 cd01745 GATase1_2 Subgroup of 96.2 0.0074 1.6E-07 52.9 5.2 81 237-331 22-116 (189)
174 PRK00758 GMP synthase subunit 96.2 0.014 3.1E-07 50.9 6.9 68 239-331 15-83 (184)
175 CHL00197 carA carbamoyl-phosph 96.2 0.034 7.3E-07 54.0 9.6 88 220-331 192-279 (382)
176 PRK13896 cobyrinic acid a,c-di 96.1 0.015 3.2E-07 57.6 7.2 86 18-128 234-323 (433)
177 PRK07649 para-aminobenzoate/an 96.1 0.023 5.1E-07 50.0 7.8 86 226-331 3-88 (195)
178 PLN02335 anthranilate synthase 96.1 0.026 5.6E-07 50.8 8.1 90 220-331 18-107 (222)
179 TIGR00888 guaA_Nterm GMP synth 96.1 0.016 3.4E-07 50.8 6.5 79 30-129 8-86 (188)
180 PLN02617 imidazole glycerol ph 96.1 0.033 7.1E-07 56.7 9.4 89 16-129 5-95 (538)
181 PRK08007 para-aminobenzoate sy 96.1 0.013 2.9E-07 51.2 5.9 86 22-128 2-87 (187)
182 TIGR01855 IMP_synth_hisH imida 96.1 0.011 2.3E-07 52.2 5.3 76 31-129 9-87 (196)
183 PRK13566 anthranilate synthase 96.1 0.072 1.6E-06 56.2 12.1 91 218-331 524-614 (720)
184 PLN02327 CTP synthase 96.0 0.03 6.4E-07 56.4 8.5 233 78-329 138-405 (557)
185 TIGR00337 PyrG CTP synthase. C 95.9 0.038 8.2E-07 55.5 8.9 224 79-329 133-386 (525)
186 PRK06774 para-aminobenzoate sy 95.9 0.017 3.7E-07 50.7 5.9 87 22-129 2-88 (191)
187 TIGR01368 CPSaseIIsmall carbam 95.9 0.048 1E-06 52.6 9.3 86 221-331 174-259 (358)
188 PF09825 BPL_N: Biotin-protein 95.9 0.048 1E-06 52.5 9.1 92 18-128 1-96 (367)
189 PRK08857 para-aminobenzoate sy 95.8 0.022 4.8E-07 50.1 6.3 86 22-128 2-87 (193)
190 PRK13181 hisH imidazole glycer 95.8 0.019 4.1E-07 50.8 5.8 75 33-129 12-88 (199)
191 PRK13152 hisH imidazole glycer 95.8 0.024 5.3E-07 50.2 6.4 84 223-331 2-89 (201)
192 cd03146 GAT1_Peptidase_E Type 95.8 0.051 1.1E-06 48.6 8.5 95 16-129 30-130 (212)
193 TIGR01815 TrpE-clade3 anthrani 95.8 0.1 2.2E-06 55.0 11.7 90 219-331 515-604 (717)
194 PRK05670 anthranilate synthase 95.7 0.028 6.2E-07 49.2 6.5 87 22-129 2-88 (189)
195 TIGR00313 cobQ cobyric acid sy 95.7 0.027 5.8E-07 56.8 7.0 50 79-129 284-335 (475)
196 PRK13170 hisH imidazole glycer 95.7 0.027 5.9E-07 49.7 6.2 83 18-129 1-86 (196)
197 TIGR00313 cobQ cobyric acid sy 95.7 0.021 4.5E-07 57.6 6.0 50 281-330 283-334 (475)
198 PLN02335 anthranilate synthase 95.6 0.033 7.2E-07 50.1 6.6 90 16-128 17-106 (222)
199 TIGR00566 trpG_papA glutamine 95.5 0.038 8.3E-07 48.4 6.5 87 22-129 2-88 (188)
200 PRK12838 carbamoyl phosphate s 95.5 0.051 1.1E-06 52.3 7.8 86 221-331 168-253 (354)
201 PF00117 GATase: Glutamine ami 95.5 0.02 4.4E-07 50.2 4.7 78 33-128 10-87 (192)
202 cd01742 GATase1_GMP_Synthase T 95.5 0.045 9.8E-07 47.5 6.9 75 33-128 11-85 (181)
203 PRK06278 cobyrinic acid a,c-di 95.3 0.047 1E-06 54.7 7.1 46 79-129 36-81 (476)
204 PRK13142 hisH imidazole glycer 95.3 0.056 1.2E-06 47.3 6.8 84 20-130 2-87 (192)
205 CHL00101 trpG anthranilate syn 95.3 0.041 8.8E-07 48.3 5.9 86 22-128 2-87 (190)
206 PRK07649 para-aminobenzoate/an 95.2 0.047 1E-06 48.1 5.9 87 22-129 2-88 (195)
207 cd01743 GATase1_Anthranilate_S 95.2 0.08 1.7E-06 46.1 7.4 76 34-129 12-87 (184)
208 PRK13566 anthranilate synthase 95.2 0.1 2.2E-06 55.1 9.3 92 14-129 523-614 (720)
209 PRK06186 hypothetical protein; 95.1 0.13 2.8E-06 46.2 8.6 75 235-327 16-94 (229)
210 TIGR01815 TrpE-clade3 anthrani 95.0 0.1 2.2E-06 55.0 8.9 92 14-129 513-604 (717)
211 PRK12564 carbamoyl phosphate s 95.0 0.11 2.3E-06 50.3 8.4 87 17-128 177-263 (360)
212 PRK05282 (alpha)-aspartyl dipe 94.8 0.14 3E-06 46.3 8.1 94 16-129 30-129 (233)
213 CHL00197 carA carbamoyl-phosph 94.8 0.13 2.8E-06 50.0 8.3 87 17-128 192-278 (382)
214 PRK00758 GMP synthase subunit 94.8 0.074 1.6E-06 46.4 6.1 68 36-129 15-83 (184)
215 cd01745 GATase1_2 Subgroup of 94.7 0.044 9.6E-07 48.0 4.5 79 34-128 22-115 (189)
216 PRK14004 hisH imidazole glycer 94.6 0.093 2E-06 46.8 6.4 84 20-129 2-88 (210)
217 PRK13152 hisH imidazole glycer 94.6 0.11 2.5E-06 45.9 7.0 75 33-129 12-89 (201)
218 COG0504 PyrG CTP synthase (UTP 94.4 0.54 1.2E-05 46.4 11.2 223 80-328 133-385 (533)
219 PRK05637 anthranilate synthase 94.3 0.16 3.5E-06 45.2 7.2 75 34-129 15-89 (208)
220 PRK11366 puuD gamma-glutamyl-g 94.3 0.065 1.4E-06 49.3 4.9 51 281-331 60-123 (254)
221 PLN02347 GMP synthetase 94.2 0.15 3.2E-06 52.1 7.6 91 221-331 11-102 (536)
222 PLN02771 carbamoyl-phosphate s 94.1 0.18 4E-06 49.3 7.6 75 237-331 252-326 (415)
223 cd01747 GATase1_Glutamyl_Hydro 94.1 0.12 2.6E-06 48.1 6.1 79 238-330 24-107 (273)
224 cd01746 GATase1_CTP_Synthase T 94.1 0.11 2.3E-06 47.3 5.6 45 281-329 54-98 (235)
225 PRK05368 homoserine O-succinyl 94.1 0.21 4.6E-06 46.9 7.7 111 219-331 34-151 (302)
226 PRK09522 bifunctional glutamin 94.0 0.25 5.4E-06 50.4 8.8 92 221-331 2-93 (531)
227 TIGR01368 CPSaseIIsmall carbam 93.9 0.17 3.8E-06 48.8 7.0 85 18-128 174-258 (358)
228 cd03129 GAT1_Peptidase_E_like 93.8 0.34 7.3E-06 43.2 8.3 99 219-331 28-130 (210)
229 PRK12838 carbamoyl phosphate s 93.7 0.21 4.6E-06 48.1 7.3 86 17-128 167-252 (354)
230 PF03575 Peptidase_S51: Peptid 93.4 0.04 8.6E-07 46.6 1.5 80 238-332 4-86 (154)
231 COG3442 Predicted glutamine am 93.2 0.26 5.6E-06 43.3 6.2 50 281-330 51-102 (250)
232 PRK00074 guaA GMP synthase; Re 93.2 0.3 6.5E-06 49.8 7.7 89 220-331 3-91 (511)
233 cd03145 GAT1_cyanophycinase Ty 93.1 0.82 1.8E-05 41.0 9.7 99 220-331 29-133 (217)
234 COG0512 PabA Anthranilate/para 93.1 0.57 1.2E-05 40.6 8.0 83 229-331 8-90 (191)
235 PRK14607 bifunctional glutamin 92.9 0.35 7.6E-06 49.5 7.8 87 225-331 2-89 (534)
236 PRK06186 hypothetical protein; 92.7 0.73 1.6E-05 41.4 8.6 87 18-123 2-93 (229)
237 PRK05380 pyrG CTP synthetase; 92.6 0.74 1.6E-05 46.5 9.3 92 16-123 287-383 (533)
238 PLN02347 GMP synthetase 92.1 0.45 9.8E-06 48.6 7.4 90 19-129 12-102 (536)
239 COG0505 CarA Carbamoylphosphat 91.9 0.58 1.3E-05 44.3 7.1 75 238-331 192-266 (368)
240 KOG3179 Predicted glutamine sy 91.8 1.8 4E-05 37.6 9.4 94 220-331 4-109 (245)
241 TIGR02069 cyanophycinase cyano 91.8 0.92 2E-05 41.6 8.3 99 219-329 27-130 (250)
242 COG0512 PabA Anthranilate/para 91.7 0.8 1.7E-05 39.7 7.3 86 22-128 4-89 (191)
243 TIGR01823 PabB-fungal aminodeo 91.6 1 2.2E-05 48.0 9.5 47 281-331 52-102 (742)
244 cd01746 GATase1_CTP_Synthase T 91.5 0.29 6.4E-06 44.4 4.8 42 79-124 55-96 (235)
245 COG2071 Predicted glutamine am 91.4 0.3 6.5E-06 43.8 4.5 49 281-330 59-122 (243)
246 COG3340 PepE Peptidase E [Amin 90.9 0.68 1.5E-05 40.7 6.1 96 220-332 32-135 (224)
247 PRK05368 homoserine O-succinyl 90.7 0.81 1.8E-05 43.0 6.9 105 14-124 32-147 (302)
248 PRK11366 puuD gamma-glutamyl-g 90.1 0.42 9.1E-06 44.0 4.5 50 79-129 61-123 (254)
249 PRK00074 guaA GMP synthase; Re 89.7 1.2 2.6E-05 45.4 7.8 87 18-128 4-90 (511)
250 PRK09522 bifunctional glutamin 89.7 1.1 2.3E-05 45.9 7.4 89 23-129 5-93 (531)
251 PRK14607 bifunctional glutamin 89.5 0.66 1.4E-05 47.6 5.8 87 22-129 2-89 (534)
252 COG3442 Predicted glutamine am 89.5 1.1 2.4E-05 39.5 6.2 75 36-128 26-102 (250)
253 COG1492 CobQ Cobyric acid synt 89.3 1.6 3.4E-05 43.5 7.8 136 167-331 199-341 (486)
254 PF13587 DJ-1_PfpI_N: N-termin 89.1 0.77 1.7E-05 28.6 3.7 27 18-44 1-38 (38)
255 COG1492 CobQ Cobyric acid synt 88.9 1.3 2.9E-05 44.0 7.1 88 16-128 250-340 (486)
256 PF07722 Peptidase_C26: Peptid 88.8 0.65 1.4E-05 41.6 4.6 50 281-330 57-121 (217)
257 cd03129 GAT1_Peptidase_E_like 88.6 2.2 4.8E-05 37.9 7.9 99 16-129 28-130 (210)
258 PLN02771 carbamoyl-phosphate s 88.5 1 2.2E-05 44.2 5.9 76 33-129 251-326 (415)
259 KOG3179 Predicted glutamine sy 88.4 1.9 4.1E-05 37.5 6.8 96 17-129 4-109 (245)
260 COG4285 Uncharacterized conser 88.2 3.7 8E-05 36.2 8.5 91 221-327 1-94 (253)
261 cd03131 GATase1_HTS Type 1 glu 87.8 0.36 7.8E-06 41.6 2.2 93 233-329 12-112 (175)
262 PRK02645 ppnK inorganic polyph 87.6 3.9 8.5E-05 38.7 9.3 87 16-121 2-90 (305)
263 PLN02327 CTP synthase 87.5 3.1 6.6E-05 42.3 8.8 100 16-124 296-403 (557)
264 TIGR00337 PyrG CTP synthase. C 87.4 3 6.5E-05 42.2 8.7 92 15-123 287-383 (525)
265 PF03575 Peptidase_S51: Peptid 86.9 0.52 1.1E-05 39.7 2.6 81 35-129 4-85 (154)
266 KOG0623 Glutamine amidotransfe 86.2 1.8 3.8E-05 40.7 5.8 50 281-330 38-89 (541)
267 PF13587 DJ-1_PfpI_N: N-termin 86.1 1.7 3.7E-05 27.1 3.9 19 229-247 20-38 (38)
268 PLN02889 oxo-acid-lyase/anthra 86.0 2.6 5.6E-05 45.7 7.8 89 225-331 84-178 (918)
269 KOG1907 Phosphoribosylformylgl 85.5 11 0.00023 40.4 11.4 143 173-335 1006-1167(1320)
270 TIGR02069 cyanophycinase cyano 84.6 4.2 9.1E-05 37.3 7.6 100 18-128 29-131 (250)
271 cd01747 GATase1_Glutamyl_Hydro 84.0 1.5 3.3E-05 40.7 4.5 78 35-128 24-107 (273)
272 COG4285 Uncharacterized conser 83.2 8 0.00017 34.2 8.1 90 18-124 1-94 (253)
273 PRK02645 ppnK inorganic polyph 82.7 9.1 0.0002 36.2 9.2 92 219-329 2-97 (305)
274 COG0505 CarA Carbamoylphosphat 82.2 1.1 2.4E-05 42.5 2.8 57 68-128 209-265 (368)
275 PRK03708 ppnK inorganic polyph 82.2 9 0.0002 35.7 8.9 87 18-121 1-89 (277)
276 COG2071 Predicted glutamine am 81.5 2.7 5.8E-05 37.8 4.8 45 79-124 60-119 (243)
277 PRK03708 ppnK inorganic polyph 81.3 12 0.00025 35.0 9.2 89 221-326 1-91 (277)
278 COG3340 PepE Peptidase E [Amin 80.9 4.5 9.8E-05 35.7 5.8 91 17-123 32-128 (224)
279 TIGR01823 PabB-fungal aminodeo 80.8 7.4 0.00016 41.6 8.6 46 79-129 53-102 (742)
280 PRK03372 ppnK inorganic polyph 80.5 14 0.0003 34.9 9.6 94 16-121 4-105 (306)
281 PRK03378 ppnK inorganic polyph 80.0 16 0.00034 34.4 9.7 91 16-121 4-96 (292)
282 PRK02155 ppnK NAD(+)/NADH kina 80.0 13 0.00028 35.0 9.1 92 15-121 3-96 (291)
283 KOG0370 Multifunctional pyrimi 79.5 5.7 0.00012 42.6 7.0 72 238-331 185-256 (1435)
284 KOG2387 CTP synthase (UTP-ammo 79.2 9.3 0.0002 37.4 7.8 44 281-328 362-405 (585)
285 PRK04539 ppnK inorganic polyph 78.3 21 0.00045 33.7 9.9 93 16-121 4-101 (296)
286 PRK09271 flavodoxin; Provision 76.7 23 0.00049 29.9 9.0 91 221-324 1-94 (160)
287 PRK01911 ppnK inorganic polyph 76.5 16 0.00035 34.3 8.6 93 18-121 1-97 (292)
288 PF03853 YjeF_N: YjeF-related 75.9 38 0.00082 28.9 10.2 110 219-332 24-148 (169)
289 PRK03372 ppnK inorganic polyph 75.9 23 0.0005 33.5 9.5 96 219-326 4-107 (306)
290 PRK14077 pnk inorganic polypho 75.6 19 0.0004 33.8 8.8 88 16-121 9-97 (287)
291 COG0062 Uncharacterized conser 75.3 23 0.0005 31.2 8.8 109 220-334 49-170 (203)
292 PRK02649 ppnK inorganic polyph 75.2 22 0.00047 33.7 9.2 93 17-121 1-101 (305)
293 PRK06455 riboflavin synthase; 75.2 5.7 0.00012 33.3 4.6 92 220-320 1-96 (155)
294 PLN02889 oxo-acid-lyase/anthra 73.7 9.4 0.0002 41.5 7.0 89 21-128 83-177 (918)
295 PRK02649 ppnK inorganic polyph 73.2 30 0.00065 32.8 9.6 95 220-326 1-103 (305)
296 PF07722 Peptidase_C26: Peptid 72.4 3.5 7.5E-05 36.9 3.0 75 36-124 29-118 (217)
297 PRK11104 hemG protoporphyrinog 71.9 28 0.00061 29.9 8.5 83 18-121 1-87 (177)
298 COG4635 HemG Flavodoxin [Energ 71.7 25 0.00055 29.6 7.5 84 18-121 1-88 (175)
299 PRK06703 flavodoxin; Provision 71.5 13 0.00029 30.9 6.2 88 220-324 1-91 (151)
300 PRK01231 ppnK inorganic polyph 70.7 30 0.00066 32.5 9.0 93 219-326 3-97 (295)
301 PRK01911 ppnK inorganic polyph 70.0 34 0.00075 32.1 9.2 98 221-329 1-103 (292)
302 COG0504 PyrG CTP synthase (UTP 69.7 6.2 0.00013 39.2 4.2 90 18-123 289-383 (533)
303 PRK05568 flavodoxin; Provision 69.6 39 0.00084 27.5 8.6 86 220-323 1-90 (142)
304 cd03143 A4_beta-galactosidase_ 69.1 27 0.00058 29.0 7.6 64 30-120 25-88 (154)
305 PRK04539 ppnK inorganic polyph 69.0 52 0.0011 31.0 10.1 94 220-326 5-103 (296)
306 cd03143 A4_beta-galactosidase_ 68.9 28 0.0006 29.0 7.7 63 232-321 24-86 (154)
307 KOG0623 Glutamine amidotransfe 68.4 10 0.00022 35.8 5.0 72 31-123 12-85 (541)
308 PRK14077 pnk inorganic polypho 68.0 38 0.00082 31.8 9.0 89 220-326 10-99 (287)
309 COG4635 HemG Flavodoxin [Energ 67.8 37 0.00081 28.6 7.7 71 236-326 18-90 (175)
310 PRK06756 flavodoxin; Provision 67.6 26 0.00056 29.0 7.2 88 220-325 1-93 (148)
311 PRK05569 flavodoxin; Provision 66.5 25 0.00054 28.7 6.8 87 220-324 1-92 (141)
312 PRK05568 flavodoxin; Provision 65.7 45 0.00098 27.1 8.2 88 18-123 2-93 (142)
313 PRK03378 ppnK inorganic polyph 65.4 52 0.0011 30.9 9.4 96 219-329 4-102 (292)
314 cd03145 GAT1_cyanophycinase Ty 65.3 10 0.00023 33.8 4.6 101 16-128 28-132 (217)
315 PF08532 Glyco_hydro_42M: Beta 65.2 21 0.00046 31.5 6.5 66 232-324 28-94 (207)
316 PF08532 Glyco_hydro_42M: Beta 64.9 23 0.0005 31.3 6.7 64 30-120 29-92 (207)
317 PRK14076 pnk inorganic polypho 64.3 39 0.00085 35.0 9.1 93 14-121 287-381 (569)
318 PRK11104 hemG protoporphyrinog 63.4 48 0.0011 28.5 8.2 83 221-324 1-87 (177)
319 KOG0370 Multifunctional pyrimi 62.8 14 0.0003 39.8 5.3 49 219-268 376-431 (1435)
320 PRK09271 flavodoxin; Provision 62.7 73 0.0016 26.7 9.1 91 18-121 1-94 (160)
321 PRK02155 ppnK NAD(+)/NADH kina 62.3 51 0.0011 30.9 8.7 92 220-326 5-98 (291)
322 TIGR01754 flav_RNR ribonucleot 61.9 60 0.0013 26.5 8.2 42 281-324 49-90 (140)
323 cd03131 GATase1_HTS Type 1 glu 61.8 4.7 0.0001 34.7 1.6 99 25-127 7-113 (175)
324 PF09897 DUF2124: Uncharacteri 61.7 32 0.00069 28.5 6.2 106 218-332 17-127 (147)
325 PRK01231 ppnK inorganic polyph 61.6 51 0.0011 31.0 8.6 90 17-121 4-95 (295)
326 TIGR01001 metA homoserine O-su 61.0 15 0.00032 34.4 4.7 107 219-327 34-147 (300)
327 PLN02935 Bifunctional NADH kin 59.4 76 0.0016 32.2 9.6 96 15-121 192-295 (508)
328 PRK06455 riboflavin synthase; 58.5 16 0.00035 30.6 4.1 63 17-88 1-65 (155)
329 PLN02256 arogenate dehydrogena 58.0 1.7E+02 0.0037 27.6 11.5 155 218-384 34-194 (304)
330 PF09822 ABC_transp_aux: ABC-t 57.9 80 0.0017 29.1 9.3 81 219-324 145-235 (271)
331 PRK12361 hypothetical protein; 56.5 1.4E+02 0.0031 30.7 11.7 26 98-123 161-186 (547)
332 COG4126 Hydantoin racemase [Am 55.2 1E+02 0.0022 27.5 8.6 56 280-349 67-125 (230)
333 PRK05569 flavodoxin; Provision 55.1 40 0.00086 27.4 6.1 88 18-123 2-94 (141)
334 KOG2387 CTP synthase (UTP-ammo 54.5 55 0.0012 32.4 7.4 39 79-121 363-401 (585)
335 PRK07308 flavodoxin; Validated 54.4 52 0.0011 27.1 6.7 85 221-324 2-91 (146)
336 PRK11914 diacylglycerol kinase 53.7 28 0.0006 32.8 5.5 87 15-120 6-96 (306)
337 TIGR01754 flav_RNR ribonucleot 52.8 1.2E+02 0.0026 24.7 8.6 88 18-121 1-90 (140)
338 PF11760 CbiG_N: Cobalamin syn 52.6 28 0.00061 25.9 4.2 35 102-136 2-36 (84)
339 PF01058 Oxidored_q6: NADH ubi 51.5 18 0.00039 29.4 3.4 41 281-326 44-84 (131)
340 COG4090 Uncharacterized protei 51.2 37 0.0008 27.4 4.8 64 261-332 69-132 (154)
341 PF09897 DUF2124: Uncharacteri 50.9 61 0.0013 26.9 6.2 108 15-131 17-128 (147)
342 PRK06756 flavodoxin; Provision 50.2 75 0.0016 26.1 7.0 88 17-122 1-93 (148)
343 PLN02727 NAD kinase 49.9 88 0.0019 34.2 8.7 96 15-121 676-776 (986)
344 PRK06703 flavodoxin; Provision 49.8 46 0.00099 27.5 5.7 89 17-122 1-92 (151)
345 KOG1224 Para-aminobenzoate (PA 49.6 24 0.00053 35.5 4.3 93 221-330 13-110 (767)
346 PRK03767 NAD(P)H:quinone oxido 49.3 34 0.00073 30.0 5.0 100 220-324 1-115 (200)
347 PRK14817 NADH dehydrogenase su 48.7 31 0.00067 29.7 4.4 39 280-323 73-111 (181)
348 PRK04885 ppnK inorganic polyph 48.6 82 0.0018 29.1 7.5 34 79-121 35-70 (265)
349 PRK13932 stationary phase surv 48.6 44 0.00095 30.7 5.7 49 219-269 4-52 (257)
350 PRK03767 NAD(P)H:quinone oxido 47.6 27 0.00059 30.6 4.1 100 18-122 2-116 (200)
351 PF09822 ABC_transp_aux: ABC-t 47.5 1.5E+02 0.0032 27.3 9.2 80 16-120 145-233 (271)
352 TIGR00147 lipid kinase, YegS/R 47.3 1.1E+02 0.0023 28.5 8.4 95 220-333 1-103 (293)
353 cd02071 MM_CoA_mut_B12_BD meth 47.2 62 0.0013 25.8 5.8 75 223-311 2-77 (122)
354 PRK06411 NADH dehydrogenase su 46.9 34 0.00073 29.6 4.4 39 280-323 72-110 (183)
355 cd02070 corrinoid_protein_B12- 46.2 48 0.001 29.1 5.5 91 220-324 82-173 (201)
356 PLN00118 isocitrate dehydrogen 46.1 22 0.00047 34.6 3.4 102 176-288 2-106 (372)
357 TIGR00147 lipid kinase, YegS/R 46.1 68 0.0015 29.9 6.8 95 17-131 1-103 (293)
358 cd05014 SIS_Kpsf KpsF-like pro 45.7 1.5E+02 0.0032 23.4 8.7 83 228-330 7-90 (128)
359 PRK13055 putative lipid kinase 44.7 96 0.0021 29.7 7.7 96 220-333 2-105 (334)
360 PRK13054 lipid kinase; Reviewe 44.7 88 0.0019 29.3 7.4 63 16-88 2-65 (300)
361 PF06283 ThuA: Trehalose utili 44.3 1.5E+02 0.0034 26.1 8.6 41 281-325 51-91 (217)
362 TIGR01957 nuoB_fam NADH-quinon 44.0 36 0.00078 28.3 4.0 39 280-323 55-93 (145)
363 PRK04761 ppnK inorganic polyph 43.9 35 0.00076 31.2 4.3 39 279-326 22-60 (246)
364 PRK12419 riboflavin synthase s 43.4 22 0.00049 29.9 2.7 92 16-116 9-110 (158)
365 cd08195 DHQS Dehydroquinate sy 42.6 3.1E+02 0.0068 26.2 13.5 139 221-370 25-164 (345)
366 PRK14076 pnk inorganic polypho 42.3 1.6E+02 0.0034 30.6 9.3 95 219-329 289-387 (569)
367 PRK04761 ppnK inorganic polyph 41.8 43 0.00094 30.6 4.6 37 76-121 22-58 (246)
368 PF00885 DMRL_synthase: 6,7-di 41.8 18 0.0004 30.0 2.0 92 16-116 2-103 (144)
369 COG1941 FrhG Coenzyme F420-red 41.0 2.4E+02 0.0052 25.6 8.8 81 220-325 3-87 (247)
370 PRK03501 ppnK inorganic polyph 40.7 1.9E+02 0.0041 26.7 8.6 72 220-326 2-76 (264)
371 PLN02935 Bifunctional NADH kin 40.6 2E+02 0.0042 29.3 9.2 100 219-329 193-301 (508)
372 PRK04885 ppnK inorganic polyph 40.4 1.4E+02 0.0031 27.6 7.8 36 282-326 35-72 (265)
373 COG0061 nadF NAD kinase [Coenz 40.3 1.8E+02 0.0039 27.1 8.6 86 18-121 1-88 (281)
374 PF03698 UPF0180: Uncharacteri 40.3 68 0.0015 23.7 4.5 22 30-51 7-28 (80)
375 PRK14820 NADH dehydrogenase su 40.2 50 0.0011 28.5 4.4 39 280-323 71-109 (180)
376 COG4090 Uncharacterized protei 39.5 75 0.0016 25.8 4.9 65 58-131 69-133 (154)
377 PRK06249 2-dehydropantoate 2-r 39.3 2.1E+02 0.0046 26.9 9.1 96 220-326 5-110 (313)
378 KOG0026 Anthranilate synthase, 38.8 2E+02 0.0044 24.4 7.5 103 22-143 21-132 (223)
379 PRK11914 diacylglycerol kinase 38.3 64 0.0014 30.4 5.4 89 219-326 7-99 (306)
380 PRK14075 pnk inorganic polypho 38.0 2.3E+02 0.0049 26.0 8.7 71 18-121 1-71 (256)
381 PLN02727 NAD kinase 37.8 1.8E+02 0.0038 32.0 8.7 100 219-329 677-782 (986)
382 TIGR01251 ribP_PPkin ribose-ph 37.6 1.6E+02 0.0036 27.8 8.0 143 185-330 9-175 (308)
383 PF04204 HTS: Homoserine O-suc 37.5 38 0.00083 31.8 3.6 107 219-327 33-146 (298)
384 COG0061 nadF NAD kinase [Coenz 37.5 2.3E+02 0.0051 26.3 8.9 87 222-326 2-90 (281)
385 PF13380 CoA_binding_2: CoA bi 37.5 2E+02 0.0044 22.6 8.5 79 18-112 1-79 (116)
386 TIGR02370 pyl_corrinoid methyl 37.2 65 0.0014 28.2 4.9 92 220-325 84-176 (197)
387 TIGR01753 flav_short flavodoxi 37.1 1.2E+02 0.0026 24.3 6.2 71 237-325 17-90 (140)
388 PLN02929 NADH kinase 36.8 1.5E+02 0.0033 28.0 7.4 64 31-122 34-97 (301)
389 KOG1907 Phosphoribosylformylgl 35.9 1E+02 0.0022 33.5 6.5 98 17-133 1058-1167(1320)
390 PRK13054 lipid kinase; Reviewe 35.2 1.4E+02 0.003 28.0 7.1 95 219-333 2-104 (300)
391 PF12646 DUF3783: Domain of un 34.5 63 0.0014 22.1 3.4 28 22-49 3-30 (58)
392 cd01481 vWA_collagen_alpha3-VI 34.0 87 0.0019 26.4 5.0 37 17-53 106-142 (165)
393 PRK00561 ppnK inorganic polyph 33.2 60 0.0013 29.9 4.1 37 281-326 32-68 (259)
394 PRK14814 NADH dehydrogenase su 33.0 72 0.0016 27.7 4.2 39 280-323 71-109 (186)
395 TIGR02990 ectoine_eutA ectoine 33.0 1.8E+02 0.0039 26.4 7.1 102 219-333 119-226 (239)
396 TIGR03127 RuMP_HxlB 6-phospho 32.6 1.9E+02 0.004 24.6 7.0 80 219-324 29-108 (179)
397 COG4242 CphB Cyanophycinase an 32.2 45 0.00097 30.3 2.9 50 281-330 105-155 (293)
398 cd06305 PBP1_methylthioribose_ 32.0 64 0.0014 29.1 4.2 34 222-255 1-37 (273)
399 PRK14075 pnk inorganic polypho 31.8 3.1E+02 0.0066 25.2 8.5 73 221-326 1-73 (256)
400 PF01975 SurE: Survival protei 31.7 61 0.0013 28.5 3.7 38 221-258 1-38 (196)
401 PRK14815 NADH dehydrogenase su 31.6 83 0.0018 27.2 4.4 39 280-323 71-109 (183)
402 PF00885 DMRL_synthase: 6,7-di 31.4 81 0.0018 26.2 4.2 92 220-320 3-104 (144)
403 COG1058 CinA Predicted nucleot 31.3 89 0.0019 28.7 4.8 78 27-113 17-108 (255)
404 PF01513 NAD_kinase: ATP-NAD k 31.3 63 0.0014 30.1 4.0 93 19-121 1-109 (285)
405 PRK02261 methylaspartate mutas 31.3 1.4E+02 0.003 24.5 5.5 78 220-311 3-81 (137)
406 PRK14816 NADH dehydrogenase su 31.1 92 0.002 26.9 4.5 39 280-323 79-117 (182)
407 COG1832 Predicted CoA-binding 31.1 2.7E+02 0.0059 22.9 7.0 81 16-112 15-97 (140)
408 cd08195 DHQS Dehydroquinate sy 30.9 2.5E+02 0.0055 26.9 8.2 138 17-166 24-162 (345)
409 TIGR03521 GldG gliding-associa 30.8 3.9E+02 0.0086 27.6 10.1 86 219-321 182-269 (552)
410 TIGR01001 metA homoserine O-su 30.6 66 0.0014 30.2 3.9 106 14-122 32-145 (300)
411 PRK03501 ppnK inorganic polyph 30.6 3.2E+02 0.007 25.2 8.4 68 18-120 3-72 (264)
412 PRK14817 NADH dehydrogenase su 30.2 82 0.0018 27.2 4.1 40 76-120 72-111 (181)
413 COG1058 CinA Predicted nucleot 30.2 1.3E+02 0.0028 27.6 5.6 75 231-314 18-106 (255)
414 KOG1252 Cystathionine beta-syn 30.1 2.5E+02 0.0055 26.9 7.6 222 98-332 84-321 (362)
415 PRK13055 putative lipid kinase 30.1 1.9E+02 0.004 27.7 7.1 63 17-88 2-68 (334)
416 PRK00561 ppnK inorganic polyph 30.0 71 0.0015 29.4 4.0 34 79-121 33-66 (259)
417 PRK13337 putative lipid kinase 29.9 1.9E+02 0.0042 27.1 7.1 96 17-131 1-103 (304)
418 PRK13934 stationary phase surv 29.7 1.3E+02 0.0029 27.7 5.7 55 221-277 1-55 (266)
419 cd02774 MopB_Res-Cmplx1_Nad11- 29.4 2.9E+02 0.0062 26.9 8.3 96 221-323 88-186 (366)
420 PF01058 Oxidored_q6: NADH ubi 29.2 63 0.0014 26.2 3.2 37 79-120 45-81 (131)
421 TIGR01755 flav_wrbA NAD(P)H:qu 29.2 1.2E+02 0.0027 26.4 5.3 100 19-123 2-116 (197)
422 PF02310 B12-binding: B12 bind 29.2 48 0.0011 25.9 2.5 57 222-290 2-59 (121)
423 PLN02929 NADH kinase 29.1 2.4E+02 0.0051 26.7 7.3 66 232-325 32-97 (301)
424 PRK06249 2-dehydropantoate 2-r 29.0 3.3E+02 0.0071 25.6 8.6 96 15-121 3-108 (313)
425 PRK08040 putative semialdehyde 28.9 4.2E+02 0.009 25.5 9.2 92 219-322 3-97 (336)
426 PF12682 Flavodoxin_4: Flavodo 28.8 30 0.00064 29.2 1.2 42 279-323 70-111 (156)
427 cd06318 PBP1_ABC_sugar_binding 28.8 66 0.0014 29.2 3.7 61 222-291 1-64 (282)
428 cd01481 vWA_collagen_alpha3-VI 28.6 1.2E+02 0.0027 25.5 5.1 38 219-256 105-142 (165)
429 cd01473 vWA_CTRP CTRP for CS 28.4 1.1E+02 0.0023 26.6 4.8 38 17-54 108-149 (192)
430 cd08197 DOIS 2-deoxy-scyllo-in 28.2 5.5E+02 0.012 24.8 10.1 96 221-324 24-119 (355)
431 PRK00061 ribH 6,7-dimethyl-8-r 27.9 1.2E+02 0.0026 25.5 4.7 93 219-320 11-113 (154)
432 PRK09267 flavodoxin FldA; Vali 27.8 2E+02 0.0043 24.2 6.2 84 220-324 1-89 (169)
433 PRK07308 flavodoxin; Validated 27.7 2.3E+02 0.0049 23.1 6.4 84 19-121 3-91 (146)
434 PRK06411 NADH dehydrogenase su 27.4 95 0.0021 26.9 4.0 40 76-120 71-110 (183)
435 PF12641 Flavodoxin_3: Flavodo 27.4 1.2E+02 0.0025 25.7 4.6 41 78-123 38-78 (160)
436 PF09558 DUF2375: Protein of u 27.1 45 0.00098 23.5 1.6 21 310-330 41-62 (71)
437 COG2242 CobL Precorrin-6B meth 26.9 1.4E+02 0.003 26.0 4.9 39 281-326 101-139 (187)
438 PRK10355 xylF D-xylose transpo 26.7 1.2E+02 0.0026 28.8 5.2 91 13-120 21-114 (330)
439 COG0716 FldA Flavodoxins [Ener 26.6 3.2E+02 0.0069 22.5 7.2 87 220-323 1-90 (151)
440 TIGR03294 FrhG coenzyme F420 h 26.5 1.1E+02 0.0024 27.5 4.6 38 281-323 49-86 (228)
441 PRK13337 putative lipid kinase 26.5 2.5E+02 0.0055 26.3 7.3 95 220-333 1-103 (304)
442 COG0062 Uncharacterized conser 26.1 4.2E+02 0.0091 23.4 7.9 108 17-132 49-170 (203)
443 cd01482 vWA_collagen_alphaI-XI 25.9 1.5E+02 0.0033 24.6 5.2 38 17-54 103-140 (164)
444 cd01538 PBP1_ABC_xylose_bindin 25.9 84 0.0018 28.9 3.9 84 222-322 1-87 (288)
445 cd01475 vWA_Matrilin VWA_Matri 25.5 1.4E+02 0.0029 26.6 5.0 36 18-53 109-144 (224)
446 PF02558 ApbA: Ketopantoate re 25.4 61 0.0013 26.6 2.6 84 239-328 13-107 (151)
447 PF12724 Flavodoxin_5: Flavodo 25.0 96 0.0021 25.4 3.7 48 73-123 37-86 (143)
448 PRK05788 cobalamin biosynthesi 24.9 3.3E+02 0.0072 25.9 7.6 38 99-136 39-76 (315)
449 cd06305 PBP1_methylthioribose_ 24.9 1E+02 0.0022 27.7 4.2 85 19-120 1-88 (273)
450 cd02067 B12-binding B12 bindin 24.6 1.4E+02 0.0029 23.4 4.4 75 223-311 2-77 (119)
451 COG1941 FrhG Coenzyme F420-red 24.5 5.4E+02 0.012 23.4 8.8 81 17-120 3-85 (247)
452 COG1570 XseA Exonuclease VII, 24.4 1.6E+02 0.0034 29.4 5.4 111 14-140 132-252 (440)
453 PRK08229 2-dehydropantoate 2-r 24.2 2.8E+02 0.0062 26.2 7.3 96 219-326 1-111 (341)
454 PRK06242 flavodoxin; Provision 23.7 1.3E+02 0.0028 24.6 4.3 43 78-123 42-85 (150)
455 TIGR01957 nuoB_fam NADH-quinon 23.7 1.1E+02 0.0024 25.5 3.6 39 77-120 55-93 (145)
456 PRK08040 putative semialdehyde 23.5 6.2E+02 0.014 24.3 9.3 90 16-120 3-98 (336)
457 CHL00023 ndhK NADH dehydrogena 23.5 1.5E+02 0.0032 26.6 4.6 39 280-323 69-107 (225)
458 PRK14025 multifunctional 3-iso 23.5 54 0.0012 31.3 2.1 66 220-288 1-66 (330)
459 PRK10355 xylF D-xylose transpo 23.4 1.5E+02 0.0032 28.1 5.1 86 219-321 24-112 (330)
460 PRK13059 putative lipid kinase 23.1 3.3E+02 0.0071 25.4 7.3 94 220-333 1-102 (295)
461 TIGR00087 surE 5'/3'-nucleotid 23.0 2.1E+02 0.0045 26.1 5.7 47 221-269 1-47 (244)
462 TIGR02336 1,3-beta-galactosyl- 22.8 2.3E+02 0.005 29.9 6.4 80 232-327 466-548 (719)
463 TIGR02690 resist_ArsH arsenica 22.7 1E+02 0.0022 27.6 3.5 105 14-121 23-137 (219)
464 PRK13059 putative lipid kinase 22.7 3.2E+02 0.007 25.5 7.2 84 17-120 1-90 (295)
465 cd08197 DOIS 2-deoxy-scyllo-in 22.6 6E+02 0.013 24.5 9.1 92 18-120 24-118 (355)
466 PRK03673 hypothetical protein; 22.6 3E+02 0.0065 27.2 7.0 84 220-314 1-106 (396)
467 COG0041 PurE Phosphoribosylcar 22.4 2.5E+02 0.0054 23.6 5.4 38 221-258 3-42 (162)
468 PRK01966 ddl D-alanyl-alanine 22.3 5.5E+02 0.012 24.4 8.8 38 220-257 3-45 (333)
469 cd02774 MopB_Res-Cmplx1_Nad11- 22.2 4E+02 0.0086 25.9 7.8 97 17-120 87-186 (366)
470 PRK07116 flavodoxin; Provision 21.9 2.6E+02 0.0057 23.3 5.8 40 78-120 75-114 (160)
471 PLN02958 diacylglycerol kinase 21.9 3.5E+02 0.0075 27.5 7.6 63 16-88 110-177 (481)
472 PRK01185 ppnK inorganic polyph 21.8 5.1E+02 0.011 24.0 8.1 80 18-121 1-82 (271)
473 cd03142 GATase1_ThuA Type 1 gl 21.8 4.7E+02 0.01 23.3 7.5 85 221-325 14-98 (215)
474 cd01472 vWA_collagen von Wille 21.6 2.6E+02 0.0056 23.1 5.8 38 17-54 103-140 (164)
475 cd06318 PBP1_ABC_sugar_binding 21.6 1.1E+02 0.0024 27.7 3.8 85 19-120 1-88 (282)
476 TIGR03127 RuMP_HxlB 6-phospho 21.5 4.9E+02 0.011 21.9 7.7 37 79-121 72-108 (179)
477 cd01482 vWA_collagen_alphaI-XI 21.5 2.1E+02 0.0045 23.8 5.2 37 220-256 103-139 (164)
478 PRK09004 FMN-binding protein M 21.5 4.3E+02 0.0093 21.7 6.9 34 220-253 1-36 (146)
479 PTZ00393 protein tyrosine phos 21.4 1.9E+02 0.0042 26.3 5.0 94 21-131 93-186 (241)
480 COG2379 GckA Putative glycerat 21.1 56 0.0012 31.7 1.6 106 62-192 65-175 (422)
481 TIGR02922 conserved hypothetic 21.1 69 0.0015 22.2 1.6 16 311-326 40-55 (67)
482 PLN02404 6,7-dimethyl-8-ribity 21.0 1.4E+02 0.003 24.7 3.7 93 219-320 6-108 (141)
483 cd04795 SIS SIS domain. SIS (S 20.9 2.1E+02 0.0045 20.4 4.5 36 281-322 46-81 (87)
484 PRK14820 NADH dehydrogenase su 20.9 1.5E+02 0.0032 25.6 4.0 40 76-120 70-109 (180)
485 PLN02958 diacylglycerol kinase 20.9 3.3E+02 0.0071 27.7 7.1 94 218-330 109-215 (481)
486 cd06533 Glyco_transf_WecG_TagA 20.9 1.6E+02 0.0035 25.0 4.3 89 17-123 46-134 (171)
487 PF09508 Lact_bio_phlase: Lact 20.8 2.3E+02 0.0049 29.7 5.8 92 219-326 434-544 (716)
488 PRK14819 NADH dehydrogenase su 20.8 1.7E+02 0.0038 26.7 4.5 39 280-323 69-107 (264)
489 cd01473 vWA_CTRP CTRP for CS 20.7 1.7E+02 0.0037 25.3 4.6 38 220-257 108-149 (192)
490 KOG0026 Anthranilate synthase, 20.7 4.7E+02 0.01 22.3 6.7 86 239-344 34-131 (223)
491 cd06312 PBP1_ABC_sugar_binding 20.6 1.5E+02 0.0033 26.7 4.5 85 222-323 1-90 (271)
492 PRK11921 metallo-beta-lactamas 20.6 1.7E+02 0.0037 28.7 5.0 91 220-323 247-341 (394)
493 PRK10310 PTS system galactitol 20.5 2.9E+02 0.0064 20.8 5.3 37 18-54 3-41 (94)
494 cd08199 EEVS 2-epi-5-epi-valio 20.5 4.3E+02 0.0093 25.5 7.6 156 16-181 25-180 (354)
495 COG1182 AcpD Acyl carrier prot 20.4 3.2E+02 0.0069 24.1 6.0 53 281-341 86-138 (202)
496 cd06319 PBP1_ABC_sugar_binding 20.3 1.3E+02 0.0029 27.0 4.0 61 222-291 1-64 (277)
497 cd05014 SIS_Kpsf KpsF-like pro 20.3 4.2E+02 0.0092 20.6 8.6 77 25-121 7-83 (128)
No 1
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=100.00 E-value=8.7e-35 Score=248.80 Aligned_cols=241 Identities=38% Similarity=0.554 Sum_probs=208.3
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 96 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~ 96 (405)
.+++.|+..++.++.|+..+.++|++.|.+|.+++++++.+++++.+..+.||..+.+.-...||+++||||.++...+.
T Consensus 5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~ 84 (247)
T KOG2764|consen 5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLS 84 (247)
T ss_pred cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhh
Confidence 45789999999999999999999999999999999999889999999999999988887768999999999988888899
Q ss_pred cChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--CccccCcEEEeCCeEcCCCcccHHH
Q 015523 97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSFE 174 (405)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiT~~g~~~~~~ 174 (405)
+.+.+.+.+++|.+.+++|++||+|++++|+..|++.|+++|+|+...+.+.+ ++|+++++|.|||++||.|+..+++
T Consensus 85 ~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~vv~dG~liTSrGpgT~~e 164 (247)
T KOG2764|consen 85 ECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVVKDGNLITSRGPGTAFE 164 (247)
T ss_pred hcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCCeEEeCcEEeccCCCchHH
Confidence 99999999999999999999999999778888999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHhcccccccCccccccccccccccCCcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEe
Q 015523 175 FALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVAS 254 (405)
Q Consensus 175 ~~l~ii~~~~g~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs 254 (405)
|++.++|++.|++.+.++.+.|.+...+ +.|+-...|.....+.+.+ +.++.+-.
T Consensus 165 Fal~lvEqL~GKeka~~v~~~l~l~~~~------------------------v~~~~~~~e~~a~~~~~~~-~~~v~~~~ 219 (247)
T KOG2764|consen 165 FALKLVEQLGGKEKANEVKKPLSLLFLP------------------------VAPEKKAGEACATADHDLE-GRQVPVEK 219 (247)
T ss_pred HHHHHHHHhcCchhhhhhhccceeeccc------------------------cCCCchhcceecceehhhh-cCcceeec
Confidence 9999999999999999998877665544 4455555666666666666 54444333
Q ss_pred ecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCc
Q 015523 255 VERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGV 292 (405)
Q Consensus 255 ~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~ 292 (405)
+. .+.....+++|+..++||.+++|||.
T Consensus 220 ~g----------~~~~~~~~~dd~~~~syD~ivlPgg~ 247 (247)
T KOG2764|consen 220 VG----------HNFAKTVAWDDAAVSSYDLIVLPGGR 247 (247)
T ss_pred cc----------cceEEEEEehhhhcccccEEEecCCC
Confidence 22 22233334888878999999999983
No 2
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=100.00 E-value=9.2e-34 Score=248.05 Aligned_cols=175 Identities=43% Similarity=0.695 Sum_probs=161.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHHhCCCeEEE--EeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVV--ASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 299 (405)
Q Consensus 222 ~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~--vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~ 299 (405)
||+|+++|||++.|+..+.++|+.+|+.+++ +|++++.+++++.|+++.++..+++.+..+||+|+||||......+.
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~ 80 (179)
T TIGR01383 1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLR 80 (179)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHh
Confidence 6899999999999999999999999977765 99987548999999999999999987668899999999964455566
Q ss_pred cChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhcCcc-cCCcEEEcCCeEecCChhhHHHHH
Q 015523 300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVV-NGTKVVVDGKVITSRGLANVIDFA 378 (405)
Q Consensus 300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~~~~-~~~~~v~dg~iiTa~g~~~~~~~~ 378 (405)
.++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||.+.+.+++..+ .++.++.|||++||+|+.++++|+
T Consensus 81 ~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~d~~ 160 (179)
T TIGR01383 81 NSKLLLNILKKQESKGKLVAAICAAPAVLLAAGVLLGKKATCYPGFKEKLLNGNYSVNEAVVVDGNIITSRGPGTAIEFA 160 (179)
T ss_pred hCHHHHHHHHHHHHCCCEEEEEChhHHHHHhcCCCCCCcEEECccHHHhccCCceeCCCCEEEeCCEEECCChhhHHHHH
Confidence 8899999999999999999999999999999999999999999999999988666 589999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHh
Q 015523 379 LAIVSKFFGHARTRSVAE 396 (405)
Q Consensus 379 l~~i~~l~g~~~a~~v~~ 396 (405)
+++|+++.|++.|+++++
T Consensus 161 l~li~~~~g~~~a~~va~ 178 (179)
T TIGR01383 161 LALVELLCGKEKAQEVAA 178 (179)
T ss_pred HHHHHHhcCHHHHHHhhc
Confidence 999999999999999986
No 3
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=5e-33 Score=245.14 Aligned_cols=175 Identities=27% Similarity=0.398 Sum_probs=160.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCC-------CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch
Q 015523 223 VLIPIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 295 (405)
Q Consensus 223 V~il~~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~ 295 (405)
|+|+++|||.+.|+..+.|+|+.++ |+++++|++++ ++++++|+++.+|..+++. .+||+|+||||. ..
T Consensus 1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~v~~d~~~~~~--~~~D~liipGg~-~~ 76 (187)
T cd03137 1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG-PVRSSSGLSLVADAGLDAL--AAADTVIVPGGP-DV 76 (187)
T ss_pred CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC-ceeecCCcEEEcCcCcccc--CCCCEEEECCCc-cc
Confidence 6899999999999999999999987 99999999998 9999999999999998865 789999999996 34
Q ss_pred HhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc----Ccc-cCCcEEEcCCeEecCC
Q 015523 296 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EVV-NGTKVVVDGKVITSRG 370 (405)
Q Consensus 296 ~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~----~~~-~~~~~v~dg~iiTa~g 370 (405)
.....++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++ ..+ .+..++.|||+|||+|
T Consensus 77 ~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~Ta~g 156 (187)
T cd03137 77 DGRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVWTSAG 156 (187)
T ss_pred ccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEEEccc
Confidence 44678999999999999999999999999999999999999999999999988876 233 3467899999999999
Q ss_pred hhhHHHHHHHHHHHccCHHHHHHHHhhcccc
Q 015523 371 LANVIDFALAIVSKFFGHARTRSVAEGLVFE 401 (405)
Q Consensus 371 ~~~~~~~~l~~i~~l~g~~~a~~v~~~l~~~ 401 (405)
+.+++++++++|++++|++.|+++++.|+++
T Consensus 157 ~~~~~d~~l~li~~~~g~~~a~~~a~~l~~~ 187 (187)
T cd03137 157 VTAGIDLCLHLVREDLGAAVANRVARRLVVP 187 (187)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence 9999999999999999999999999998763
No 4
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=100.00 E-value=6.3e-33 Score=243.98 Aligned_cols=174 Identities=22% Similarity=0.361 Sum_probs=161.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCC-------CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch
Q 015523 223 VLIPIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 295 (405)
Q Consensus 223 V~il~~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~ 295 (405)
|+|+++|||.+.|+..++|+|+.++ |+++++|.+++ ++++++|+++.++..+++. .+||+|+||||.. .
T Consensus 1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~--~~~D~liipgg~~-~ 76 (185)
T cd03136 1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA-PVTSSNGLRVAPDAALEDA--PPLDYLFVVGGLG-A 76 (185)
T ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC-eeecCCCcEEeCCcccccc--CCCCEEEEeCCCC-c
Confidence 6899999999999999999999875 89999999997 9999999999999999766 7899999999963 3
Q ss_pred HhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc----CcccCCcEEEcCCeEecCCh
Q 015523 296 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EVVNGTKVVVDGKVITSRGL 371 (405)
Q Consensus 296 ~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~----~~~~~~~~v~dg~iiTa~g~ 371 (405)
. ...++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.|++ ..+.++.+|.|||++|++|+
T Consensus 77 ~-~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~dg~i~Ta~g~ 155 (185)
T cd03136 77 R-RAVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAGG 155 (185)
T ss_pred c-ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHccccCCCeeEECcccHHHHHHHCCCCccccCeEEEcCCEEEeccH
Confidence 3 678999999999999999999999999999999999999999999999998876 35678899999999999999
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHhhcccc
Q 015523 372 ANVIDFALAIVSKFFGHARTRSVAEGLVFE 401 (405)
Q Consensus 372 ~~~~~~~l~~i~~l~g~~~a~~v~~~l~~~ 401 (405)
.++++|+++++++++|++.|+++++.|+++
T Consensus 156 ~~~~d~~l~ii~~~~g~~~a~~va~~~~~~ 185 (185)
T cd03136 156 TAALDLMLELIARDHGAALAARVAEQFLHD 185 (185)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHccC
Confidence 999999999999999999999999999875
No 5
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=100.00 E-value=6.9e-33 Score=242.52 Aligned_cols=175 Identities=47% Similarity=0.736 Sum_probs=158.2
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhcCCEEEE--EecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523 19 NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTM--ASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 96 (405)
Q Consensus 19 ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~--vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~ 96 (405)
||+|+++|||+..|+..+.++|+.+++++++ +|++++.+++++.|+++.++..+++.+..+||+|+||||......+.
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~ 80 (179)
T TIGR01383 1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLR 80 (179)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHh
Confidence 6999999999999999999999999977776 99987448999999999999999987656899999999953345556
Q ss_pred cChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCCCcc-ccCcEEEeCCeEcCCCcccHHHH
Q 015523 97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWA-VKSNIHVSGEVTTSRGPGTSFEF 175 (405)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~~-~~~~~v~dg~iiT~~g~~~~~~~ 175 (405)
+++.+.+||+++++++++|+++|+| .++|+++|+|+|+++|+||.+.+.+.+..+ .++.++.||+++||+|+.++.|+
T Consensus 81 ~~~~l~~~l~~~~~~~~~i~~ic~G-~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~d~ 159 (179)
T TIGR01383 81 NSKLLLNILKKQESKGKLVAAICAA-PAVLLAAGVLLGKKATCYPGFKEKLLNGNYSVNEAVVVDGNIITSRGPGTAIEF 159 (179)
T ss_pred hCHHHHHHHHHHHHCCCEEEEEChh-HHHHHhcCCCCCCcEEECccHHHhccCCceeCCCCEEEeCCEEECCChhhHHHH
Confidence 7899999999999999999999995 568999999999999999999988888655 57889999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHH
Q 015523 176 ALCLVEQLFGESVAKEIGE 194 (405)
Q Consensus 176 ~l~ii~~~~g~~~a~~~a~ 194 (405)
++++|+++.|++.|+++++
T Consensus 160 ~l~li~~~~g~~~a~~va~ 178 (179)
T TIGR01383 160 ALALVELLCGKEKAQEVAA 178 (179)
T ss_pred HHHHHHHhcCHHHHHHhhc
Confidence 9999999999999999975
No 6
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=5e-33 Score=244.32 Aligned_cols=175 Identities=28% Similarity=0.499 Sum_probs=163.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCC-----CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523 223 VLIPIANGSEEIEIVTIVDILRRAK-----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 297 (405)
Q Consensus 223 V~il~~~g~~~~e~~~~~~~l~~~~-----~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~ 297 (405)
|+|+++|||++.|+..+.++|+.+| |+++++|++++ ++++++|.++.++..+++. .+||+|+||||. ....
T Consensus 1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~--~~~D~lvipgg~-~~~~ 76 (183)
T cd03139 1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGG-PVSSRSGLTVLPDTSFADP--PDLDVLLVPGGG-GTRA 76 (183)
T ss_pred CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCC-ceEeCCCCEEcCCcccccC--CCCCEEEECCCc-chhh
Confidence 6899999999999999999999999 99999999998 9999999999999999876 689999999996 4555
Q ss_pred hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhcC--cc-cCCcEEEcCCeEecCChhhH
Q 015523 298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNE--VV-NGTKVVVDGKVITSRGLANV 374 (405)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~~--~~-~~~~~v~dg~iiTa~g~~~~ 374 (405)
+..++.+++||+++++++|+|+++|+|+++|+++|+|+|+++|+||...+.+++. .+ .+++++.|||++||+|+.++
T Consensus 77 ~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~ 156 (183)
T cd03139 77 LVNDPALLDFIRRQAARAKYVTSVCTGALLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVDGNIWTSGGVSAG 156 (183)
T ss_pred hccCHHHHHHHHHhcccCCEEEEEchHHHHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCCEEEecCCEEEcCcHHHH
Confidence 7789999999999999999999999999999999999999999999999998872 33 88999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHhhcccc
Q 015523 375 IDFALAIVSKFFGHARTRSVAEGLVFE 401 (405)
Q Consensus 375 ~~~~l~~i~~l~g~~~a~~v~~~l~~~ 401 (405)
.+|++++|+++.|++.|+++++.|+++
T Consensus 157 ~~~~l~ii~~~~g~~~a~~~a~~~~~~ 183 (183)
T cd03139 157 IDMALALVARLFGEELAQAVALLIEYD 183 (183)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence 999999999999999999999999864
No 7
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=2.7e-32 Score=242.03 Aligned_cols=176 Identities=26% Similarity=0.407 Sum_probs=161.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhC------------CCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcC
Q 015523 223 VLIPIANGSEEIEIVTIVDILRRA------------KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG 290 (405)
Q Consensus 223 V~il~~~g~~~~e~~~~~~~l~~~------------~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpg 290 (405)
|+|+++|||...++..++|+|+.+ +|+|+++|++++ ++.++.|+++.+|..+++. ++||+|+|||
T Consensus 1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~-~v~s~~g~~i~~d~~~~~~--~~~D~liIpg 77 (195)
T cd03138 1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG-PVLLAGGILILPDATLADV--PAPDLVIVPG 77 (195)
T ss_pred CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC-eeecCCCceeccccccccc--CCCCEEEECC
Confidence 689999999999999999999974 489999999998 9999999999999988876 7999999999
Q ss_pred CccchH--hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc----Cc-ccCCcEEEcC
Q 015523 291 GVAGAE--RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EV-VNGTKVVVDG 363 (405)
Q Consensus 291 G~~~~~--~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~----~~-~~~~~~v~dg 363 (405)
|..... .+..++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.|++ .. ..++.++.||
T Consensus 78 g~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~dg 157 (195)
T cd03138 78 LGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTDG 157 (195)
T ss_pred CcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCcEEEeCC
Confidence 864444 5678999999999999999999999999999999999999999999999888876 23 3358899999
Q ss_pred CeEecCChhhHHHHHHHHHHHccCHHHHHHHHhhcccc
Q 015523 364 KVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFE 401 (405)
Q Consensus 364 ~iiTa~g~~~~~~~~l~~i~~l~g~~~a~~v~~~l~~~ 401 (405)
|++||+|+.+++++++++|+++.|.+.|++|++.|.++
T Consensus 158 ~~~T~~g~~~~~d~al~li~~~~G~~~a~~va~~l~~~ 195 (195)
T cd03138 158 NLITAGGAMAWADLALHLIERLAGPELAQLVARFLLID 195 (195)
T ss_pred CEEEcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999998864
No 8
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=100.00 E-value=6.5e-32 Score=232.70 Aligned_cols=162 Identities=48% Similarity=0.714 Sum_probs=151.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceee-cCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcC
Q 015523 223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIV-ASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKS 301 (405)
Q Consensus 223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~-~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~ 301 (405)
|+|+++|||.+.|+..+.++|+.+||+++++|++++ ++. ++.|+.+.++..+++.++.+||+|+||||......+.++
T Consensus 1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~-~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~ 79 (163)
T cd03135 1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKK-LAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADN 79 (163)
T ss_pred CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCC-ceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhC
Confidence 689999999999999999999999999999999998 765 689999999999999877899999999996345666789
Q ss_pred hHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhcCcccCCcEEEcCCeEecCChhhHHHHHHHH
Q 015523 302 RILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAI 381 (405)
Q Consensus 302 ~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~~~~~~~~~v~dg~iiTa~g~~~~~~~~l~~ 381 (405)
+.+++||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+.+..+.++.+|+|||+|||+|+.++.+|++++
T Consensus 80 ~~l~~~l~~~~~~~~~i~~ic~g~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~l~T~~g~~s~~d~al~l 159 (163)
T cd03135 80 EKLIKLLKEFNAKGKLIAAICAAPAVLAKAGLLKGKKATCYPGFEDKLGGANYVDEPVVVDGNIITSRGPGTAFEFALKI 159 (163)
T ss_pred HHHHHHHHHHHHcCCEEEEEchhHHHHHHcCCcCCCeEEECchHHHhcCCCeEecCCEEEECCEEEcCCcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999977777888999999999999999999999999
Q ss_pred HHHc
Q 015523 382 VSKF 385 (405)
Q Consensus 382 i~~l 385 (405)
|+++
T Consensus 160 i~~l 163 (163)
T cd03135 160 VEAL 163 (163)
T ss_pred HHhC
Confidence 9975
No 9
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=1.5e-32 Score=241.34 Aligned_cols=175 Identities=28% Similarity=0.366 Sum_probs=161.1
Q ss_pred EEEEecCCCchhhHHHHHHHHHhcC-----CEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523 20 VLVPVGFGTEEMEAVIIVDVLRRAG-----AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 94 (405)
Q Consensus 20 i~ill~~g~~~~e~~~~~~~l~~~~-----~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~ 94 (405)
|+||++|||++.|+..+.++|+.++ |+++++|++++ ++++++|..+.+|..+.+.+ +||+|+||||. ....
T Consensus 1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~~--~~D~lvipgg~-~~~~ 76 (183)
T cd03139 1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGG-PVSSRSGLTVLPDTSFADPP--DLDVLLVPGGG-GTRA 76 (183)
T ss_pred CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCC-ceEeCCCCEEcCCcccccCC--CCCEEEECCCc-chhh
Confidence 6899999999999999999999998 99999999998 99999999999999998754 79999999994 4555
Q ss_pred cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-Cc-c-ccCcEEEeCCeEcCCCccc
Q 015523 95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FW-A-VKSNIHVSGEVTTSRGPGT 171 (405)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~~-~-~~~~~v~dg~iiT~~g~~~ 171 (405)
+..++.+++||+++++++|+|+++|+|+ ++|+++|+|+|+++|+||...+.+++ ++ + .++++++|||++||+|+.+
T Consensus 77 ~~~~~~~~~~l~~~~~~~k~i~aic~g~-~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a 155 (183)
T cd03139 77 LVNDPALLDFIRRQAARAKYVTSVCTGA-LLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVDGNIWTSGGVSA 155 (183)
T ss_pred hccCHHHHHHHHHhcccCCEEEEEchHH-HHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCCEEEecCCEEEcCcHHH
Confidence 7788999999999999999999999965 58999999999999999999999887 32 3 7788999999999999999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHhcccc
Q 015523 172 SFEFALCLVEQLFGESVAKEIGELLLMH 199 (405)
Q Consensus 172 ~~~~~l~ii~~~~g~~~a~~~a~~l~~~ 199 (405)
+.++++++|+++.|++.++++++.|+++
T Consensus 156 ~~~~~l~ii~~~~g~~~a~~~a~~~~~~ 183 (183)
T cd03139 156 GIDMALALVARLFGEELAQAVALLIEYD 183 (183)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence 9999999999999999999999998864
No 10
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=100.00 E-value=3e-31 Score=235.41 Aligned_cols=183 Identities=36% Similarity=0.595 Sum_probs=166.4
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecC--CceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVER--STQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 297 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~--~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~ 297 (405)
++||+|+++|||.+.|+..|+++|++++++++++|.++ +.+++++.|+++.++..+++.+..+||+|+||||......
T Consensus 2 ~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~ 81 (196)
T PRK11574 2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAEC 81 (196)
T ss_pred CceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhh
Confidence 58999999999999999999999999999999999864 2379999999999999999876678999999999644555
Q ss_pred hhcChHHHHHHHHHhhcCCEEEEEchHHHH-HHHcCCCCCCeeecCcchhhhhhcCcccCCcEEEcC--CeEecCChhhH
Q 015523 298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIV-LHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDG--KVITSRGLANV 374 (405)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~-La~aGlL~g~~~t~~~~~~~~l~~~~~~~~~~v~dg--~iiTa~g~~~~ 374 (405)
+..++.+++||++++++|++|+++|+|+++ |+.+|+|+|+++|.++.+.+.+.+..+.++.++.|+ |+|||+|+.++
T Consensus 82 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p~~~~~~~~~v~d~~~~iiT~~G~~a~ 161 (196)
T PRK11574 82 FRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVNLLTSQGPGTA 161 (196)
T ss_pred hhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhcccCcccCCCEEEeCCccEEeCCCcchH
Confidence 678889999999999999999999999984 677999999999999998888888777778888886 99999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHhhccccc
Q 015523 375 IDFALAIVSKFFGHARTRSVAEGLVFEY 402 (405)
Q Consensus 375 ~~~~l~~i~~l~g~~~a~~v~~~l~~~~ 402 (405)
.+|++++|+++.|.+.|+++++.|+++.
T Consensus 162 ~dlal~li~~~~G~~~a~~va~~~~~~~ 189 (196)
T PRK11574 162 IDFALKIIDLLVGREKAHEVASQLVMAA 189 (196)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhhhccCc
Confidence 9999999999999999999999998865
No 11
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=99.98 E-value=4.5e-32 Score=238.53 Aligned_cols=174 Identities=20% Similarity=0.266 Sum_probs=158.5
Q ss_pred EEEEecCCCchhhHHHHHHHHHhcC-------CEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh
Q 015523 20 VLVPVGFGTEEMEAVIIVDVLRRAG-------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 92 (405)
Q Consensus 20 i~ill~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~ 92 (405)
|+|+++|||+.+|+..+.|+|+.++ |++++++.+++ ++++++|+++.+|..+.+.+ +||+|+||||. ..
T Consensus 1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~~--~~D~liipgg~-~~ 76 (185)
T cd03136 1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA-PVTSSNGLRVAPDAALEDAP--PLDYLFVVGGL-GA 76 (185)
T ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC-eeecCCCcEEeCCccccccC--CCCEEEEeCCC-Cc
Confidence 6899999999999999999998764 89999999997 99999999999999987654 79999999994 33
Q ss_pred hccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC----CccccCcEEEeCCeEcCCC
Q 015523 93 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT----FWAVKSNIHVSGEVTTSRG 168 (405)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~----~~~~~~~~v~dg~iiT~~g 168 (405)
. ...++.+++||+++++++++|+++|+| .++|+++|+|+|+++|+||...+.|++ .++.+++++.|||++||+|
T Consensus 77 ~-~~~~~~~~~~l~~~~~~~~~i~aic~g-~~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~dg~i~Ta~g 154 (185)
T cd03136 77 R-RAVTPALLAWLRRAARRGVALGGIDTG-AFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAG 154 (185)
T ss_pred c-ccCCHHHHHHHHHHHhcCCEEEEEcHH-HHHHHHccccCCCeeEECcccHHHHHHHCCCCccccCeEEEcCCEEEecc
Confidence 3 678899999999999999999999996 568999999999999999999998876 4556778999999999999
Q ss_pred cccHHHHHHHHHHHhcChHHHHHHHHhcccc
Q 015523 169 PGTSFEFALCLVEQLFGESVAKEIGELLLMH 199 (405)
Q Consensus 169 ~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~ 199 (405)
+.+++|+++++|+++.|++.|+.+++.|+++
T Consensus 155 ~~~~~d~~l~ii~~~~g~~~a~~va~~~~~~ 185 (185)
T cd03136 155 GTAALDLMLELIARDHGAALAARVAEQFLHD 185 (185)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHccC
Confidence 9999999999999999999999999998864
No 12
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.98 E-value=8.7e-32 Score=237.22 Aligned_cols=174 Identities=26% Similarity=0.304 Sum_probs=157.4
Q ss_pred EEEEecCCCchhhHHHHHHHHHhcC-------CEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh
Q 015523 20 VLVPVGFGTEEMEAVIIVDVLRRAG-------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 92 (405)
Q Consensus 20 i~ill~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~ 92 (405)
|+|+++|||++.|+..+.|+|+.++ |++++++++++ ++++++|+++.+|..+.+.+ +||+|+||||. ..
T Consensus 1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~v~~d~~~~~~~--~~D~liipGg~-~~ 76 (187)
T cd03137 1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG-PVRSSSGLSLVADAGLDALA--AADTVIVPGGP-DV 76 (187)
T ss_pred CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC-ceeecCCcEEEcCcCccccC--CCCEEEECCCc-cc
Confidence 6899999999999999999999886 99999999997 99999999999999988554 79999999994 44
Q ss_pred hccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-C---cccc-CcEEEeCCeEcCC
Q 015523 93 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-F---WAVK-SNIHVSGEVTTSR 167 (405)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~---~~~~-~~~v~dg~iiT~~ 167 (405)
.....++.+.+||+++++++++|+++|+| .++|+++|+|+|+++|+||...+.+++ + .+.+ ..++.||+++||+
T Consensus 77 ~~~~~~~~l~~~l~~~~~~~~~i~aic~g-~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~Ta~ 155 (187)
T cd03137 77 DGRPPPPALLAALRRAAARGARVASVCTG-AFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVWTSA 155 (187)
T ss_pred ccccCCHHHHHHHHHHHhcCCEEEEECHH-HHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEEEcc
Confidence 44678999999999999999999999996 458999999999999999999988887 3 3443 4588999999999
Q ss_pred CcccHHHHHHHHHHHhcChHHHHHHHHhccc
Q 015523 168 GPGTSFEFALCLVEQLFGESVAKEIGELLLM 198 (405)
Q Consensus 168 g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~ 198 (405)
|+.+++|+++++|+++.|++.++++++.|++
T Consensus 156 g~~~~~d~~l~li~~~~g~~~a~~~a~~l~~ 186 (187)
T cd03137 156 GVTAGIDLCLHLVREDLGAAVANRVARRLVV 186 (187)
T ss_pred cHHHHHHHHHHHHHHHhCHHHHHHHHHHhcc
Confidence 9999999999999999999999999998875
No 13
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.97 E-value=1.4e-31 Score=237.44 Aligned_cols=176 Identities=22% Similarity=0.281 Sum_probs=157.8
Q ss_pred EEEEecCCCchhhHHHHHHHHHh------------cCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcC
Q 015523 20 VLVPVGFGTEEMEAVIIVDVLRR------------AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG 87 (405)
Q Consensus 20 i~ill~~g~~~~e~~~~~~~l~~------------~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipg 87 (405)
|+|+++|||...++..++|+|+. .+|++++++++++ ++++++|+++.+|..+++.+ +||+|+|||
T Consensus 1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~-~v~s~~g~~i~~d~~~~~~~--~~D~liIpg 77 (195)
T cd03138 1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG-PVLLAGGILILPDATLADVP--APDLVIVPG 77 (195)
T ss_pred CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC-eeecCCCceecccccccccC--CCCEEEECC
Confidence 68999999999999999999985 3599999999998 99999999999999888764 799999999
Q ss_pred Cchhhh--ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-C---cccc-CcEEEe
Q 015523 88 GMPGSV--RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-F---WAVK-SNIHVS 160 (405)
Q Consensus 88 g~~~~~--~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~---~~~~-~~~v~d 160 (405)
|..... .+..++.+++||+++++++++|+++|+| .++|+++|+|+|+++|+||...+.|++ + .+.+ ..++.|
T Consensus 78 g~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G-~~~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~d 156 (195)
T cd03138 78 LGGDPDELLLADNPALIAWLRRQHANGATVAAACTG-VFLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTD 156 (195)
T ss_pred CcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHH-HHHHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCcEEEeC
Confidence 853333 4678899999999999999999999996 558999999999999999999888877 4 3343 679999
Q ss_pred CCeEcCCCcccHHHHHHHHHHHhcChHHHHHHHHhcccc
Q 015523 161 GEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMH 199 (405)
Q Consensus 161 g~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~ 199 (405)
|+++||+|+.++.|+++++|+++.|.+.|+++++.|.++
T Consensus 157 g~~~T~~g~~~~~d~al~li~~~~G~~~a~~va~~l~~~ 195 (195)
T cd03138 157 GNLITAGGAMAWADLALHLIERLAGPELAQLVARFLLID 195 (195)
T ss_pred CCEEEcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999988764
No 14
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=99.97 E-value=5.9e-31 Score=244.12 Aligned_cols=184 Identities=27% Similarity=0.376 Sum_probs=169.5
Q ss_pred CCcCEEEEEeCCCCcHHHHHHHHHHHHhCC-------CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcC
Q 015523 218 DRMPRVLIPIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG 290 (405)
Q Consensus 218 ~~~~~V~il~~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpg 290 (405)
.+..+|+++++++|....+..+++.|+.+| |.|.+++.+++ +|.+++|+.|.+|..+++. ..+|++++.+
T Consensus 8 ~~~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~-~V~ss~G~~i~~d~~~~~~--~~~~~v~v~~ 84 (328)
T COG4977 8 PSPQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGG-PVRSSSGLSIAPDGGLEAA--PPIDILPVCG 84 (328)
T ss_pred CCceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCC-CcccCCCceEecCCccccc--CcceEEEEec
Confidence 456899999999999999999999999987 67999999998 9999999999999999998 5699999988
Q ss_pred CccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc----CcccCCcEEEcCCeE
Q 015523 291 GVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EVVNGTKVVVDGKVI 366 (405)
Q Consensus 291 G~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~----~~~~~~~~v~dg~ii 366 (405)
|. ........+++.+||++.++.|..|+++|+|+++||++|||+|+++|+||.+.+.|++ ....++.++.||++|
T Consensus 85 g~-~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~~~~lfviDg~~~ 163 (328)
T COG4977 85 GL-GPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRVTDRLFVIDGDRI 163 (328)
T ss_pred CC-CcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHhcccCCCCeeeccccHHHHHHhCCCCCCCCceEEecCCEE
Confidence 86 3344344488999999999999999999999999999999999999999998888877 457889999999999
Q ss_pred ecCChhhHHHHHHHHHHHccCHHHHHHHHhhcccccCCC
Q 015523 367 TSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPRS 405 (405)
Q Consensus 367 Ta~g~~~~~~~~l~~i~~l~g~~~a~~v~~~l~~~~~r~ 405 (405)
||+|..+++||++++|++.+|.+.|++|+++|++++.|+
T Consensus 164 T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~~~R~ 202 (328)
T COG4977 164 TCAGGTAAIDLMLALIRRDFGAALANRVARQLVVDPIRS 202 (328)
T ss_pred EcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhhccccC
Confidence 999999999999999999999999999999999999885
No 15
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=99.97 E-value=6.5e-31 Score=243.83 Aligned_cols=214 Identities=18% Similarity=0.276 Sum_probs=182.2
Q ss_pred CCCcEEEEEecCCCchhhHHHHHHHHHhcC-------CEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcC
Q 015523 15 SFALNVLVPVGFGTEEMEAVIIVDVLRRAG-------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG 87 (405)
Q Consensus 15 ~~~~ki~ill~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipg 87 (405)
.++.+|+++++++|..+.+..+++.|+.++ |.|.+++.+++ +|.+++|+.|.+|..+...+. +|++++++
T Consensus 8 ~~~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~-~V~ss~G~~i~~d~~~~~~~~--~~~v~v~~ 84 (328)
T COG4977 8 PSPQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGG-PVRSSSGLSIAPDGGLEAAPP--IDILPVCG 84 (328)
T ss_pred CCceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCC-CcccCCCceEecCCcccccCc--ceEEEEec
Confidence 456799999999999999999999999773 67999999998 999999999999999999874 99999988
Q ss_pred CchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-Cccc---cCcEEEeCCe
Q 015523 88 GMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FWAV---KSNIHVSGEV 163 (405)
Q Consensus 88 g~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~~~~---~~~~v~dg~i 163 (405)
|. ........+++..||++.+++|..++++|+ |+|+||++|||||+++|+||...+.|++ |+.+ +..+++||++
T Consensus 85 g~-~~~~~~~~~~l~~~Lr~~~~~G~~l~gict-Gaf~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~~~~lfviDg~~ 162 (328)
T COG4977 85 GL-GPERPVNAPALLAWLRRAARRGARLGGLCT-GAFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRVTDRLFVIDGDR 162 (328)
T ss_pred CC-CcccccchHHHHHHHHHHHhcCCeEEEehH-hHHHHHHhcccCCCCeeeccccHHHHHHhCCCCCCCCceEEecCCE
Confidence 83 344344448899999999999999999999 5789999999999999999999999999 6554 4669999999
Q ss_pred EcCCCcccHHHHHHHHHHHhcChHHHHHHHHhcccccccCccccccccccccccCCcCEEEEEeCCCCcHHHHHHHHHHH
Q 015523 164 TTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDIL 243 (405)
Q Consensus 164 iT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~il~~~g~~~~e~~~~~~~l 243 (405)
|||+|+++++|+|+++|++.+|.+.|.++++.|+++..++....+.. ......+.....+..+++.+
T Consensus 163 ~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~~~R~~~~~Q~~-------------~~~~~~~~~~~~l~~~i~~m 229 (328)
T COG4977 163 ITCAGGTAAIDLMLALIRRDFGAALANRVARQLVVDPIRSGGDRQRL-------------PLLGRLGHRDPRLLRAIELM 229 (328)
T ss_pred EEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhhccccCCCccccc-------------cccccCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999998883333322 22233455566666677666
Q ss_pred HhC
Q 015523 244 RRA 246 (405)
Q Consensus 244 ~~~ 246 (405)
+..
T Consensus 230 e~n 232 (328)
T COG4977 230 EAN 232 (328)
T ss_pred HHh
Confidence 543
No 16
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=99.97 E-value=1.9e-30 Score=230.25 Aligned_cols=185 Identities=36% Similarity=0.578 Sum_probs=164.1
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCC--CceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEP--QLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 94 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~--~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~ 94 (405)
.|||+|+++|||++.|+..+.++|+++++++++++..+ +.++++++|+.+.+|..+++.+..+||+|+||||......
T Consensus 2 ~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~ 81 (196)
T PRK11574 2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAEC 81 (196)
T ss_pred CceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhh
Confidence 46899999999999999999999999999999999864 2379999999999999998876568999999999534455
Q ss_pred cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCCCccccCcEEEeC--CeEcCCCcccH
Q 015523 95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSG--EVTTSRGPGTS 172 (405)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~~~~~~~v~dg--~iiT~~g~~~~ 172 (405)
+.+++.+.+||+++++++++|+++|+|+.++|+.+|+++|++.|.+..+.+.+....+.++++++|+ |+|||+|+.++
T Consensus 82 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p~~~~~~~~~v~d~~~~iiT~~G~~a~ 161 (196)
T PRK11574 82 FRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVNLLTSQGPGTA 161 (196)
T ss_pred hhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhcccCcccCCCEEEeCCccEEeCCCcchH
Confidence 6778899999999999999999999986656778999999999998887777766777788888886 99999999999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHhcccccc
Q 015523 173 FEFALCLVEQLFGESVAKEIGELLLMHNA 201 (405)
Q Consensus 173 ~~~~l~ii~~~~g~~~a~~~a~~l~~~~~ 201 (405)
.||++++|+++.|.+.|+++++.|+++..
T Consensus 162 ~dlal~li~~~~G~~~a~~va~~~~~~~~ 190 (196)
T PRK11574 162 IDFALKIIDLLVGREKAHEVASQLVMAAG 190 (196)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhhhccCcc
Confidence 99999999999999999999999987763
No 17
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=99.97 E-value=8.2e-31 Score=225.81 Aligned_cols=162 Identities=46% Similarity=0.672 Sum_probs=147.9
Q ss_pred EEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeE-eccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccC
Q 015523 20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVE-ASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC 98 (405)
Q Consensus 20 i~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~-~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~ 98 (405)
|+||++|||+..|+..+.++|+.++|+++++|++++ ++. ++.|+.+.++..+++.++.+||+|+||||......+.++
T Consensus 1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~-~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~ 79 (163)
T cd03135 1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKK-LAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADN 79 (163)
T ss_pred CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCC-ceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhC
Confidence 689999999999999999999999999999999998 765 689999999999998876789999999994245556778
Q ss_pred hHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCCCccccCcEEEeCCeEcCCCcccHHHHHHH
Q 015523 99 EILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALC 178 (405)
Q Consensus 99 ~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~ 178 (405)
+.+++||+++++++++|+++|+| .++|+++|+|+|+++|+||...+.+.+.++.++++|+|||++||+|+.++.|++++
T Consensus 80 ~~l~~~l~~~~~~~~~i~~ic~g-~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~l~T~~g~~s~~d~al~ 158 (163)
T cd03135 80 EKLIKLLKEFNAKGKLIAAICAA-PAVLAKAGLLKGKKATCYPGFEDKLGGANYVDEPVVVDGNIITSRGPGTAFEFALK 158 (163)
T ss_pred HHHHHHHHHHHHcCCEEEEEchh-HHHHHHcCCcCCCeEEECchHHHhcCCCeEecCCEEEECCEEEcCCcccHHHHHHH
Confidence 99999999999999999999996 55899999999999999999988886677777899999999999999999999999
Q ss_pred HHHHh
Q 015523 179 LVEQL 183 (405)
Q Consensus 179 ii~~~ 183 (405)
+|+++
T Consensus 159 li~~l 163 (163)
T cd03135 159 IVEAL 163 (163)
T ss_pred HHHhC
Confidence 99974
No 18
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=99.97 E-value=1e-30 Score=225.90 Aligned_cols=162 Identities=28% Similarity=0.447 Sum_probs=150.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcC
Q 015523 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKS 301 (405)
Q Consensus 222 ~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~ 301 (405)
||+|++++||.+.|+..+.++|.++|++++++|++++ ++.++.|.++.++..+++.++.+||+++||||. ....+..+
T Consensus 1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~-~~~~~~~~ 78 (166)
T TIGR01382 1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAG-TTVGKHGYSVTVDATIDEVNPEEYDALVIPGGR-APEYLRLN 78 (166)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCC-ceeccCCceeeccCChhhCCHHHCcEEEECCCC-CHHHhccC
Confidence 6899999999999999999999999999999999998 999999999999999998866789999999996 45556678
Q ss_pred hHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccC-CcEEEcCCeEecCChhhHHHHH
Q 015523 302 RILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNG-TKVVVDGKVITSRGLANVIDFA 378 (405)
Q Consensus 302 ~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~-~~~v~dg~iiTa~g~~~~~~~~ 378 (405)
+.+.+||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++ ..+.+ +.+|.|||+|||+|+.++.+|+
T Consensus 79 ~~l~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~fa 158 (166)
T TIGR01382 79 NKAVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAFN 158 (166)
T ss_pred HHHHHHHHHHHHcCCEEEEEChHHHHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECCEEEeCCcccHHHHH
Confidence 89999999999999999999999999999999999999999999988886 45566 7999999999999999999999
Q ss_pred HHHHHHc
Q 015523 379 LAIVSKF 385 (405)
Q Consensus 379 l~~i~~l 385 (405)
..+++.+
T Consensus 159 ~~~~~~l 165 (166)
T TIGR01382 159 REFLKLL 165 (166)
T ss_pred HHHHHHh
Confidence 9999976
No 19
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=99.97 E-value=2.6e-30 Score=246.97 Aligned_cols=182 Identities=27% Similarity=0.345 Sum_probs=163.9
Q ss_pred CCcCEEEEEeCCCCcHHHHHHHHHHHHhCC-------CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcC
Q 015523 218 DRMPRVLIPIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG 290 (405)
Q Consensus 218 ~~~~~V~il~~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpg 290 (405)
.++++|+|+++|||...|++.+.|+|+.++ |+|+++|++++ ++++++|+++.+|..+++. +++|+|+|||
T Consensus 7 ~~~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~-~v~ss~g~~i~~d~~~~~~--~~~D~livpG 83 (322)
T PRK09393 7 MHNHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG-PLRAAGGITVVADGGLELL--DRADTIVIPG 83 (322)
T ss_pred ccccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC-ceEeCCCcEEeCCCCcccc--CCCCEEEECC
Confidence 356799999999999999999999997653 79999999998 9999999999999999976 7899999999
Q ss_pred CccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc----Cc-ccCCcEEEcCCe
Q 015523 291 GVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EV-VNGTKVVVDGKV 365 (405)
Q Consensus 291 G~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~----~~-~~~~~~v~dg~i 365 (405)
|. +.. ...++.+++||+++.+++++|+++|+|+++||++|+|+|+++|+||...+.|++ .. ..+..++.|||+
T Consensus 84 g~-~~~-~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~~~~v~~g~i 161 (322)
T PRK09393 84 WR-GPD-APVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDVLYVDEGQI 161 (322)
T ss_pred CC-ccc-ccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCCceEEecCCE
Confidence 85 332 246899999999999999999999999999999999999999999999998875 22 334568999999
Q ss_pred EecCChhhHHHHHHHHHHHccCHHHHHHHHhhcccccCC
Q 015523 366 ITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR 404 (405)
Q Consensus 366 iTa~g~~~~~~~~l~~i~~l~g~~~a~~v~~~l~~~~~r 404 (405)
+||+|+.++++++++++++.+|.+.++.+++.|+++..|
T Consensus 162 iT~~G~~a~~d~~l~li~~~~g~~~a~~va~~ll~~~~~ 200 (322)
T PRK09393 162 LTSAGSAAGIDLCLHLVRRDFGSEAANRVARRLVVPPHR 200 (322)
T ss_pred EecccHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCcCC
Confidence 999999999999999999999999999999999987654
No 20
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=99.97 E-value=1.7e-30 Score=224.22 Aligned_cols=160 Identities=32% Similarity=0.504 Sum_probs=149.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeec-CCceeecCCCc-EEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVE-RSTQIVASQGV-KIIADKSISDAAESVYDLIILPGGVAGAERLQ 299 (405)
Q Consensus 222 ~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~-~~~~v~~~~g~-~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~ 299 (405)
||+|+++|||++.|+..+.+.|+.++|+++++|++ ++ +++++.|. .+.++..+++..+.+||+|+||||. ....+.
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~-~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~~~~ 78 (165)
T cd03134 1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGG-EIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPDKLR 78 (165)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCc-ccccCcCceeecCCCChHHCCHHHCCEEEECCCC-Chhhhc
Confidence 68999999999999999999999999999999999 77 99999999 9999999998866789999999997 556567
Q ss_pred cChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccCCcEEEcCCeEecCChhhHHHH
Q 015523 300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVIDF 377 (405)
Q Consensus 300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiTa~g~~~~~~~ 377 (405)
.++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++ ..+.++.++.|||+|||+|+.++.+|
T Consensus 79 ~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~f 158 (165)
T cd03134 79 RDPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPAF 158 (165)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEchHHHHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCCEEEECCEEEecCcchHHHH
Confidence 8899999999999999999999999999999999999999999999998886 56678889999999999999999999
Q ss_pred HHHHHH
Q 015523 378 ALAIVS 383 (405)
Q Consensus 378 ~l~~i~ 383 (405)
+..+++
T Consensus 159 ~~~~~~ 164 (165)
T cd03134 159 NRAILK 164 (165)
T ss_pred HHHHHh
Confidence 999986
No 21
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=99.97 E-value=2.4e-30 Score=223.56 Aligned_cols=162 Identities=27% Similarity=0.371 Sum_probs=148.8
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccC
Q 015523 19 NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC 98 (405)
Q Consensus 19 ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~ 98 (405)
||+|++++||++.|+..+.++|++++++++++|++++ ++.++.|..+.++.++++.++.+||+++||||. ....+..+
T Consensus 1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~-~~~~~~~~ 78 (166)
T TIGR01382 1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAG-TTVGKHGYSVTVDATIDEVNPEEYDALVIPGGR-APEYLRLN 78 (166)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCC-ceeccCCceeeccCChhhCCHHHCcEEEECCCC-CHHHhccC
Confidence 6999999999999999999999999999999999987 999999999999999998876689999999994 45555677
Q ss_pred hHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--Ccccc-CcEEEeCCeEcCCCcccHHHH
Q 015523 99 EILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVK-SNIHVSGEVTTSRGPGTSFEF 175 (405)
Q Consensus 99 ~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~-~~~v~dg~iiT~~g~~~~~~~ 175 (405)
+.+.+||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.+++ ..+.+ +++|+|||+|||+|+.++.+|
T Consensus 79 ~~l~~~l~~~~~~~~~i~~ic~G~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~f 157 (166)
T TIGR01382 79 NKAVRLVREFVEKGKPVAAICHGP-QLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAF 157 (166)
T ss_pred HHHHHHHHHHHHcCCEEEEEChHH-HHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECCEEEeCCcccHHHH
Confidence 899999999999999999999965 58999999999999999998888887 56677 689999999999999999999
Q ss_pred HHHHHHHh
Q 015523 176 ALCLVEQL 183 (405)
Q Consensus 176 ~l~ii~~~ 183 (405)
+..+++++
T Consensus 158 a~~~~~~l 165 (166)
T TIGR01382 158 NREFLKLL 165 (166)
T ss_pred HHHHHHHh
Confidence 99999975
No 22
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=99.97 E-value=1.6e-30 Score=224.52 Aligned_cols=160 Identities=26% Similarity=0.390 Sum_probs=147.4
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecC-CCceeEeccCc-EEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523 19 NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVE-PQLEVEASSGT-RLVADTSISNCSHQVFDLIALPGGMPGSVRLR 96 (405)
Q Consensus 19 ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~-~~~~v~~~~g~-~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~ 96 (405)
||+|+++|||+..|+..+.++|++++|++++++++ ++ +++++.|. .+.+|..+++.+..+||+|+||||. ....+.
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~-~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~~~~ 78 (165)
T cd03134 1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGG-EIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPDKLR 78 (165)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCc-ccccCcCceeecCCCChHHCCHHHCCEEEECCCC-Chhhhc
Confidence 69999999999999999999999999999999999 76 99999999 9999999998876689999999994 455566
Q ss_pred cChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--CccccCcEEEeCCeEcCCCcccHHH
Q 015523 97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSFE 174 (405)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiT~~g~~~~~~ 174 (405)
.++.+++||+++++++++|+++|+| .++|+++|+|+|+++|+||...+.+++ ..+.++++++|||+|||+|+.++++
T Consensus 79 ~~~~~~~~l~~~~~~~~~i~~ic~G-~~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~ 157 (165)
T cd03134 79 RDPDAVAFVRAFAEAGKPVAAICHG-PWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPA 157 (165)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEchH-HHHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCCEEEECCEEEecCcchHHH
Confidence 7899999999999999999999996 558999999999999999998888887 6677888999999999999999999
Q ss_pred HHHHHHH
Q 015523 175 FALCLVE 181 (405)
Q Consensus 175 ~~l~ii~ 181 (405)
|+..+|+
T Consensus 158 f~~~~~~ 164 (165)
T cd03134 158 FNRAILK 164 (165)
T ss_pred HHHHHHh
Confidence 9999986
No 23
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=99.97 E-value=8.4e-30 Score=220.12 Aligned_cols=154 Identities=31% Similarity=0.519 Sum_probs=137.3
Q ss_pred EeCCCCcHHHHHHHHHHHHhCC-------CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523 226 PIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 298 (405)
Q Consensus 226 l~~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~ 298 (405)
|+||||.+.|++.+.|+|+.++ |++++++++++ ++.++.|+.+.++..+++. .++|+|+||||.. ....
T Consensus 1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~-~v~~s~g~~i~~~~~~~~~--~~~D~lvvpg~~~-~~~~ 76 (166)
T PF13278_consen 1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG-PVTSSSGLRIQPDGSLDDA--PDFDILVVPGGPG-FDAA 76 (166)
T ss_dssp EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC-EEEBTTSEEEEESEETCCC--SCCSEEEEE-STT-HHHH
T ss_pred CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC-eeeecCCeEEEeccChhhc--ccCCEEEeCCCCC-chhc
Confidence 6899999999999999999998 99999999998 9999999999999999996 8999999999974 4666
Q ss_pred hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhcC-----cccCCcEEEcCCeEecCChhh
Q 015523 299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNE-----VVNGTKVVVDGKVITSRGLAN 373 (405)
Q Consensus 299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~~-----~~~~~~~v~dg~iiTa~g~~~ 373 (405)
..++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.|++. +..++.+|.|||++||+|..+
T Consensus 77 ~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta~g~~~ 156 (166)
T PF13278_consen 77 AKDPALLDWLRQQHAQGTYIAAICTGALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITAGGPTA 156 (166)
T ss_dssp TT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEESSCCH
T ss_pred ccCHHHHHHhhhhhccceEEeeeehHHHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEecHHHH
Confidence 788999999999999999999999999999999999999999999999999882 234899999999999999999
Q ss_pred HHHHHHHHHH
Q 015523 374 VIDFALAIVS 383 (405)
Q Consensus 374 ~~~~~l~~i~ 383 (405)
++|+++++|+
T Consensus 157 ~~dl~l~li~ 166 (166)
T PF13278_consen 157 AIDLALYLIE 166 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999999986
No 24
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=99.97 E-value=9.3e-30 Score=243.13 Aligned_cols=187 Identities=21% Similarity=0.250 Sum_probs=165.9
Q ss_pred ccCCCCCcEEEEEecCCCchhhHHHHHHHHHhc-------CCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEE
Q 015523 11 FISPSFALNVLVPVGFGTEEMEAVIIVDVLRRA-------GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLI 83 (405)
Q Consensus 11 ~~~~~~~~ki~ill~~g~~~~e~~~~~~~l~~~-------~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~l 83 (405)
+|.++++++|+|+++|||+.+|+..+.|+|+.+ .|+|++++++++ +|++++|+++.+|..+++.+ +||+|
T Consensus 3 ~~~~~~~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~-~v~ss~g~~i~~d~~~~~~~--~~D~l 79 (322)
T PRK09393 3 SMMTMHNHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG-PLRAAGGITVVADGGLELLD--RADTI 79 (322)
T ss_pred ccccccccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC-ceEeCCCcEEeCCCCccccC--CCCEE
Confidence 466777889999999999999999999999754 279999999997 99999999999999998764 79999
Q ss_pred EEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-Cc---ccc-CcEE
Q 015523 84 ALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FW---AVK-SNIH 158 (405)
Q Consensus 84 iipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~~---~~~-~~~v 158 (405)
+||||. +.. ...++.+.+||+++++++++|+++|+| .++|+++|+|+|+++|+||...+.|++ ++ +.+ ..++
T Consensus 80 ivpGg~-~~~-~~~~~~l~~~l~~~~~~~~~i~aic~g-~~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~~~~v 156 (322)
T PRK09393 80 VIPGWR-GPD-APVPEPLLEALRAAHARGARLCSICSG-VFVLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDVLYV 156 (322)
T ss_pred EECCCC-ccc-ccCCHHHHHHHHHHHHcCCEEEEEcHH-HHHHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCCceEE
Confidence 999983 333 346889999999999999999999996 458999999999999999999998876 33 333 3588
Q ss_pred EeCCeEcCCCcccHHHHHHHHHHHhcChHHHHHHHHhcccccccC
Q 015523 159 VSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADN 203 (405)
Q Consensus 159 ~dg~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~ 203 (405)
.|||++||+|+.+++++++++|++..|.+.++.+++.|+++..+.
T Consensus 157 ~~g~iiT~~G~~a~~d~~l~li~~~~g~~~a~~va~~ll~~~~~~ 201 (322)
T PRK09393 157 DEGQILTSAGSAAGIDLCLHLVRRDFGSEAANRVARRLVVPPHRD 201 (322)
T ss_pred ecCCEEecccHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCcCCC
Confidence 899999999999999999999999999999999999999887665
No 25
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=99.97 E-value=7.8e-30 Score=218.45 Aligned_cols=183 Identities=40% Similarity=0.652 Sum_probs=172.0
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 299 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~ 299 (405)
++.+.++..+|.++.|+..+.++|++.|.++++++++++.+++++.|.++.+|..+.|.-..+||++++|||..+...+.
T Consensus 5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~ 84 (247)
T KOG2764|consen 5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLS 84 (247)
T ss_pred cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhh
Confidence 57888999999999999999999999999999999999989999999999999999887669999999999977888899
Q ss_pred cChHHHHHHHHHhhcCCEEEEEchHH-HHHHHcCCCCCCeeecCcchhhhhhc--CcccCCcEEEcCCeEecCChhhHHH
Q 015523 300 KSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVID 376 (405)
Q Consensus 300 ~~~~l~~~l~~~~~~~k~i~aic~g~-~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiTa~g~~~~~~ 376 (405)
+.+.+.+.+++|...|++|++||+|+ .+|+..|++.|+++|+|+..++.+.. .+|.+.++|.|||++|++|+..+++
T Consensus 85 ~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~vv~dG~liTSrGpgT~~e 164 (247)
T KOG2764|consen 85 ECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVVKDGNLITSRGPGTAFE 164 (247)
T ss_pred hcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCCeEEeCcEEeccCCCchHH
Confidence 99999999999999999999999999 67777778889999999999999998 7899999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHhhccccc
Q 015523 377 FALAIVSKFFGHARTRSVAEGLVFEY 402 (405)
Q Consensus 377 ~~l~~i~~l~g~~~a~~v~~~l~~~~ 402 (405)
|++.|++.|.|++.++.+.+.|.+..
T Consensus 165 Fal~lvEqL~GKeka~~v~~~l~l~~ 190 (247)
T KOG2764|consen 165 FALKLVEQLGGKEKANEVKKPLSLLF 190 (247)
T ss_pred HHHHHHHHhcCchhhhhhhccceeec
Confidence 99999999999999999999887654
No 26
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.96 E-value=5.5e-29 Score=217.79 Aligned_cols=163 Identities=21% Similarity=0.383 Sum_probs=146.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCc--eeec-------------CCCcEEeeCCCccCcCCCCccEE
Q 015523 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERST--QIVA-------------SQGVKIIADKSISDAAESVYDLI 286 (405)
Q Consensus 222 ~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~--~v~~-------------~~g~~v~~~~~l~~~~~~~~D~l 286 (405)
||+|+++||+++.|+..+++.|.++|++++++|++++. ++++ ..|..+.++..+++..+.+||+|
T Consensus 1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 80 (180)
T cd03169 1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL 80 (180)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence 68999999999999999999999999999999999861 2333 36899999999999866789999
Q ss_pred EEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccCCcEEEcCC
Q 015523 287 ILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGK 364 (405)
Q Consensus 287 ivpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~ 364 (405)
+||||. ....+..++.+.+||+++++++|+|+++|+|+++|+++|+|+|+++|+||...+.+++ ..+.++.++.|||
T Consensus 81 iv~GG~-~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~~v~D~~ 159 (180)
T cd03169 81 VIPGGR-APEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDGVVVDGN 159 (180)
T ss_pred EEcCCC-ChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHcCccCCCEEecccchHHHHHHCCCEEeeccEEEECC
Confidence 999996 4444567889999999999999999999999999999999999999999999988886 3467788999999
Q ss_pred eEecCChhhHHHHHHHHHHHc
Q 015523 365 VITSRGLANVIDFALAIVSKF 385 (405)
Q Consensus 365 iiTa~g~~~~~~~~l~~i~~l 385 (405)
+|||+|+.++.+|+.++++.|
T Consensus 160 iiT~~~~~~~~~f~~~~~~~l 180 (180)
T cd03169 160 LVTAQAWPDHPAFLREFLKLL 180 (180)
T ss_pred EEEecCCchHHHHHHHHHHhC
Confidence 999999999999999999865
No 27
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=99.96 E-value=1.8e-29 Score=218.06 Aligned_cols=154 Identities=29% Similarity=0.384 Sum_probs=134.2
Q ss_pred EecCCCchhhHHHHHHHHHhcC-------CEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523 23 PVGFGTEEMEAVIIVDVLRRAG-------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 95 (405)
Q Consensus 23 ll~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~ 95 (405)
|+||||+..|+..+.|+|+.++ |++++++++++ ++++++|+.+.++..+++.+ ++|+|+||||. .....
T Consensus 1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~-~v~~s~g~~i~~~~~~~~~~--~~D~lvvpg~~-~~~~~ 76 (166)
T PF13278_consen 1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG-PVTSSSGLRIQPDGSLDDAP--DFDILVVPGGP-GFDAA 76 (166)
T ss_dssp EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC-EEEBTTSEEEEESEETCCCS--CCSEEEEE-ST-THHHH
T ss_pred CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC-eeeecCCeEEEeccChhhcc--cCCEEEeCCCC-Cchhc
Confidence 6899999999999999999887 99999999998 99999999999999999854 79999999995 34556
Q ss_pred ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-Ccc---c-cCcEEEeCCeEcCCCcc
Q 015523 96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FWA---V-KSNIHVSGEVTTSRGPG 170 (405)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~~~---~-~~~~v~dg~iiT~~g~~ 170 (405)
..++.+++||+++++++++|+++|+| +++|+++|+|+|+++|+||...+.|++ ++. . ++.+|.|||++||+|+.
T Consensus 77 ~~~~~l~~~l~~~~~~~~~i~aic~G-~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta~g~~ 155 (166)
T PF13278_consen 77 AKDPALLDWLRQQHAQGTYIAAICTG-ALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITAGGPT 155 (166)
T ss_dssp TT-HHHHHHHHHHHCCTSEEEEETTH-HHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEESSCC
T ss_pred ccCHHHHHHhhhhhccceEEeeeehH-HHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEecHHH
Confidence 67899999999999999999999995 678999999999999999999999998 443 3 67899999999999999
Q ss_pred cHHHHHHHHHH
Q 015523 171 TSFEFALCLVE 181 (405)
Q Consensus 171 ~~~~~~l~ii~ 181 (405)
+++|+++++||
T Consensus 156 ~~~dl~l~li~ 166 (166)
T PF13278_consen 156 AAIDLALYLIE 166 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999999996
No 28
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.96 E-value=7.1e-29 Score=214.96 Aligned_cols=160 Identities=24% Similarity=0.405 Sum_probs=142.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhC-CCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcC
Q 015523 223 VLIPIANGSEEIEIVTIVDILRRA-KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKS 301 (405)
Q Consensus 223 V~il~~~g~~~~e~~~~~~~l~~~-~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~ 301 (405)
|+|+++|||++.|+..+++.|++. +|++++++++++ +++++.|+.+.++..+++.++.+||+|+||||.. .. ...+
T Consensus 1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~-~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~-~~-~~~~ 77 (170)
T cd03140 1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE-PVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDS-WD-NPEA 77 (170)
T ss_pred CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC-eeEecCCeEEccccchhHCCHhHccEEEEcCCcc-cc-cCCc
Confidence 589999999999999999999997 799999999998 9999999999999999987667899999999963 22 2478
Q ss_pred hHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcc-hhhhhhc-----CcccCCcEEEcCCeEecCChhhHH
Q 015523 302 RILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPS-VIGKLTN-----EVVNGTKVVVDGKVITSRGLANVI 375 (405)
Q Consensus 302 ~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~-~~~~l~~-----~~~~~~~~v~dg~iiTa~g~~~~~ 375 (405)
+.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||. ..+.++. ..+.++.+|.|||+|||+|.. +.
T Consensus 78 ~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~g~a-~~ 156 (170)
T cd03140 78 PDLAGLVRQALKQGKPVAAICGATLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLITANGTA-PV 156 (170)
T ss_pred HHHHHHHHHHHHcCCEEEEEChHHHHHHHCCCcCCCcccCChHHHHHHhccccCcccccccCcEEEcCCEEECCCcC-HH
Confidence 8999999999999999999999999999999999999999985 4555543 356789999999999998765 69
Q ss_pred HHHHHHHHHcc
Q 015523 376 DFALAIVSKFF 386 (405)
Q Consensus 376 ~~~l~~i~~l~ 386 (405)
+|++++++++.
T Consensus 157 d~al~~i~~l~ 167 (170)
T cd03140 157 EFAAEILRALD 167 (170)
T ss_pred HHHHHHHHHcC
Confidence 99999999863
No 29
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.96 E-value=1.1e-28 Score=215.78 Aligned_cols=163 Identities=22% Similarity=0.321 Sum_probs=144.0
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCc--eeEe-------------ccCcEEecCcccCCCCCCcccEE
Q 015523 19 NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQL--EVEA-------------SSGTRLVADTSISNCSHQVFDLI 83 (405)
Q Consensus 19 ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~--~v~~-------------~~g~~v~~~~~~~~~~~~~~d~l 83 (405)
||+|+++|||+..|+..++++|+++|++++++|++++. ++++ ..|..+.++.++++.++.+||+|
T Consensus 1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 80 (180)
T cd03169 1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL 80 (180)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence 69999999999999999999999999999999999861 2333 36889999999998876789999
Q ss_pred EEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--CccccCcEEEeC
Q 015523 84 ALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSG 161 (405)
Q Consensus 84 iipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg 161 (405)
+||||. ....+..++.+.+||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.+++ ..+.+++++.||
T Consensus 81 iv~GG~-~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~-~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~~v~D~ 158 (180)
T cd03169 81 VIPGGR-APEYLRLDEKVLAIVRHFAEANKPVAAICHGP-QILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDGVVVDG 158 (180)
T ss_pred EEcCCC-ChhhhccCHHHHHHHHHHHHcCCEEEEECcHH-HHHHHcCccCCCEEecccchHHHHHHCCCEEeeccEEEEC
Confidence 999994 44445567899999999999999999999965 58999999999999999998888887 346677899999
Q ss_pred CeEcCCCcccHHHHHHHHHHHh
Q 015523 162 EVTTSRGPGTSFEFALCLVEQL 183 (405)
Q Consensus 162 ~iiT~~g~~~~~~~~l~ii~~~ 183 (405)
|+|||+|+.++.+|+.++++.+
T Consensus 159 ~iiT~~~~~~~~~f~~~~~~~l 180 (180)
T cd03169 159 NLVTAQAWPDHPAFLREFLKLL 180 (180)
T ss_pred CEEEecCCchHHHHHHHHHHhC
Confidence 9999999999999999999864
No 30
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.96 E-value=3.9e-28 Score=210.36 Aligned_cols=160 Identities=23% Similarity=0.308 Sum_probs=140.2
Q ss_pred EEEEecCCCchhhHHHHHHHHHhc-CCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccC
Q 015523 20 VLVPVGFGTEEMEAVIIVDVLRRA-GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC 98 (405)
Q Consensus 20 i~ill~~g~~~~e~~~~~~~l~~~-~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~ 98 (405)
|+++++|+|++.|+..+.++|+++ +|++++++++++ ++++++|+.+.++..+++.++.+||+++||||. ... ...+
T Consensus 1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~-~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~-~~~-~~~~ 77 (170)
T cd03140 1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE-PVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGD-SWD-NPEA 77 (170)
T ss_pred CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC-eeEecCCeEEccccchhHCCHhHccEEEEcCCc-ccc-cCCc
Confidence 589999999999999999999997 899999999998 999999999999999998765689999999994 322 3467
Q ss_pred hHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccC-ccccCCC-----CccccCcEEEeCCeEcCCCcccH
Q 015523 99 EILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPA-FTDKLPT-----FWAVKSNIHVSGEVTTSRGPGTS 172 (405)
Q Consensus 99 ~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~-~~~~l~~-----~~~~~~~~v~dg~iiT~~g~~~~ 172 (405)
+.+.+||+++++++++|+++|+| .++|+++|+|+|+++|+||. ..+.+++ ..+.++.+++|||+|||+| .++
T Consensus 78 ~~l~~~l~~~~~~~~~i~aic~G-~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~g-~a~ 155 (170)
T cd03140 78 PDLAGLVRQALKQGKPVAAICGA-TLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLITANG-TAP 155 (170)
T ss_pred HHHHHHHHHHHHcCCEEEEEChH-HHHHHHCCCcCCCcccCChHHHHHHhccccCcccccccCcEEEcCCEEECCC-cCH
Confidence 89999999999999999999996 55899999999999999985 5555553 3456788999999999987 558
Q ss_pred HHHHHHHHHHhc
Q 015523 173 FEFALCLVEQLF 184 (405)
Q Consensus 173 ~~~~l~ii~~~~ 184 (405)
.||++++|+++.
T Consensus 156 ~d~al~~i~~l~ 167 (170)
T cd03140 156 VEFAAEILRALD 167 (170)
T ss_pred HHHHHHHHHHcC
Confidence 999999999863
No 31
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=99.94 E-value=8e-27 Score=210.03 Aligned_cols=157 Identities=20% Similarity=0.230 Sum_probs=134.8
Q ss_pred CCCcHHHHHHHHHHHHhCCCeEEEEeecCCcee---------------------ecCCCcEEeeCCCccCcCCCCccEEE
Q 015523 229 NGSEEIEIVTIVDILRRAKVDVVVASVERSTQI---------------------VASQGVKIIADKSISDAAESVYDLII 287 (405)
Q Consensus 229 ~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v---------------------~~~~g~~v~~~~~l~~~~~~~~D~li 287 (405)
.|+++.|+..|++.|+++|++|+++|++++.++ .++.+.++.++..+++++..+||+|+
T Consensus 20 tG~~~~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~ 99 (231)
T cd03147 20 TGVFFSEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFF 99 (231)
T ss_pred cccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEE
Confidence 689999999999999999999999999874111 12344567788899999899999999
Q ss_pred EcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc-------CCCCCCeeecCcchh--------------
Q 015523 288 LPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH-------GLLKAKKATAHPSVI-------------- 346 (405)
Q Consensus 288 vpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a-------GlL~g~~~t~~~~~~-------------- 346 (405)
+|||++.+..+.+++.++++|++|++++|+|++||+|+.+|+.+ ++++||++|+++..+
T Consensus 100 iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~~ 179 (231)
T cd03147 100 VAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRN 179 (231)
T ss_pred ECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhcccC
Confidence 99998777889999999999999999999999999999999987 899999999998754
Q ss_pred -----hhhhc--Cccc------CCcEEEcCCeEecCChhhHHHHHHHHHHHc
Q 015523 347 -----GKLTN--EVVN------GTKVVVDGKVITSRGLANVIDFALAIVSKF 385 (405)
Q Consensus 347 -----~~l~~--~~~~------~~~~v~dg~iiTa~g~~~~~~~~l~~i~~l 385 (405)
+.+++ +.+. +..+|+|||+||++++.++.+|++.+++.|
T Consensus 180 ~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l 231 (231)
T cd03147 180 LESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL 231 (231)
T ss_pred CccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence 23332 3444 345899999999999999999999999875
No 32
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=99.94 E-value=2.5e-26 Score=206.80 Aligned_cols=156 Identities=28% Similarity=0.339 Sum_probs=135.1
Q ss_pred CCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeec--------------------CCCcEEeeCCCccCcCCCCccEEEE
Q 015523 229 NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVA--------------------SQGVKIIADKSISDAAESVYDLIIL 288 (405)
Q Consensus 229 ~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~--------------------~~g~~v~~~~~l~~~~~~~~D~liv 288 (405)
+||++.|+..|+++|.++|++|+++|++++ ++.. ..|..+.++..++++++.+||+|+|
T Consensus 18 ~G~~~~E~~~p~~~l~~aG~~V~~as~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~i 96 (221)
T cd03141 18 TGLWLEELAHPYDVFTEAGYEVDFASPKGG-KVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFI 96 (221)
T ss_pred CccCHHHHHHHHHHHHHCCCeEEEECCCCC-CCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEE
Confidence 799999999999999999999999999886 4221 2345588999999998889999999
Q ss_pred cCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC------CCCCCeeecCcchhhh--------------
Q 015523 289 PGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG------LLKAKKATAHPSVIGK-------------- 348 (405)
Q Consensus 289 pgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG------lL~g~~~t~~~~~~~~-------------- 348 (405)
|||......+..++.+++||+++++++|+|++||+|+++|+++| +|+||++|+||...+.
T Consensus 97 pGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~ 176 (221)
T cd03141 97 PGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLED 176 (221)
T ss_pred CCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHH
Confidence 99975456678899999999999999999999999999999999 7999999999876554
Q ss_pred -hhc--CcccC-----CcEEEcCCeEecCChhhHHHHHHHHHHHc
Q 015523 349 -LTN--EVVNG-----TKVVVDGKVITSRGLANVIDFALAIVSKF 385 (405)
Q Consensus 349 -l~~--~~~~~-----~~~v~dg~iiTa~g~~~~~~~~l~~i~~l 385 (405)
+++ ..+.+ ..+|+|+|+||++++.++.+|++++++.+
T Consensus 177 ~l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l 221 (221)
T cd03141 177 ELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL 221 (221)
T ss_pred HHHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence 333 23443 55999999999999999999999999864
No 33
>PRK04155 chaperone protein HchA; Provisional
Probab=99.94 E-value=1.3e-25 Score=207.31 Aligned_cols=166 Identities=19% Similarity=0.256 Sum_probs=137.0
Q ss_pred cCEEEEEeC--------------CCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecC-----------------CCcE
Q 015523 220 MPRVLIPIA--------------NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVAS-----------------QGVK 268 (405)
Q Consensus 220 ~~~V~il~~--------------~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~-----------------~g~~ 268 (405)
.+||+|++. .|+++.|+..|++.|+++||+|+++|++++ ++... .+..
T Consensus 49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~-~~~~d~~s~~~~d~~v~~~~~~~~~~ 127 (287)
T PRK04155 49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGN-PVKFEYWAMPHEDEAVMGFYEKYKSK 127 (287)
T ss_pred CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccccchhHHHHHHHhhhh
Confidence 358888875 689999999999999999999999999986 54321 1222
Q ss_pred EeeCCCccCc----C--CCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC------CCCC
Q 015523 269 IIADKSISDA----A--ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG------LLKA 336 (405)
Q Consensus 269 v~~~~~l~~~----~--~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG------lL~g 336 (405)
+..+..++++ . +.+||+|+||||++.+..+++++.++++|+++++++|+|++||+|+.+|..+| +++|
T Consensus 128 l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a~~~~g~~ll~G 207 (287)
T PRK04155 128 FKQPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAAGVDHGDNPLNG 207 (287)
T ss_pred ccCceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCcCCCcccCC
Confidence 3333334333 2 67999999999997788899999999999999999999999999999999999 9999
Q ss_pred CeeecCcchh-------------------hhhhc--CcccC----CcEEEcCCeEecCChhhHHHHHHHHHHHcc
Q 015523 337 KKATAHPSVI-------------------GKLTN--EVVNG----TKVVVDGKVITSRGLANVIDFALAIVSKFF 386 (405)
Q Consensus 337 ~~~t~~~~~~-------------------~~l~~--~~~~~----~~~v~dg~iiTa~g~~~~~~~~l~~i~~l~ 386 (405)
|++|+++... +.|++ ..+.+ ..+|+|||+||++++.++.+|++.+++.|.
T Consensus 208 kkvT~fp~~~e~~~~~~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll 282 (287)
T PRK04155 208 YSICAFPDALDKQTPEIGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELL 282 (287)
T ss_pred CEEeeCCCHHHhhccccccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHH
Confidence 9999988663 34443 24444 589999999999999999999999999875
No 34
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=99.93 E-value=3.6e-25 Score=195.07 Aligned_cols=170 Identities=34% Similarity=0.558 Sum_probs=152.1
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCC-ceeecCCC-cEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERS-TQIVASQG-VKIIADKSISDAAESVYDLIILPGGVAGAER 297 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~-~~v~~~~g-~~v~~~~~l~~~~~~~~D~livpgG~~~~~~ 297 (405)
++++++++++||.+.|+..|+++|+++++.++++++.++ ..+.+..| ..+.++..++++++.+||++++|||..+...
T Consensus 2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~ 81 (188)
T COG0693 2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY 81 (188)
T ss_pred CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh
Confidence 579999999999999999999999999999999999984 35555554 7777788999987779999999999446666
Q ss_pred hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC-CCCCCeeecCcchhhhhhc------CcccCC-----cEEEcCC-
Q 015523 298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG-LLKAKKATAHPSVIGKLTN------EVVNGT-----KVVVDGK- 364 (405)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG-lL~g~~~t~~~~~~~~l~~------~~~~~~-----~~v~dg~- 364 (405)
+..++.+++++++++.++|+|++||+|+.+|+.+| +++|+++|+++...+.... ..+.+. .+|.||+
T Consensus 82 ~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~~~vv~dg~~ 161 (188)
T COG0693 82 LRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNA 161 (188)
T ss_pred ccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccccccCCceEeecCchHHHHHhHHHhcCceEeccccCcCCEEEECCe
Confidence 77779999999999999999999999999999999 9999999999988887766 577777 9999999
Q ss_pred eEecCChhhHHHHHHHHHHHccCHH
Q 015523 365 VITSRGLANVIDFALAIVSKFFGHA 389 (405)
Q Consensus 365 iiTa~g~~~~~~~~l~~i~~l~g~~ 389 (405)
++|+.++.++.+|+..+++++.+..
T Consensus 162 lvt~~~p~~~~~~~~~~~~~l~~~~ 186 (188)
T COG0693 162 LVTGRNPASAPAFALELLKALGGAE 186 (188)
T ss_pred EEEcCCcccHHHHHHHHHHHHhccc
Confidence 9999999999999999999998754
No 35
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=99.93 E-value=4e-25 Score=199.15 Aligned_cols=159 Identities=16% Similarity=0.225 Sum_probs=135.9
Q ss_pred eCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeec-----------------CCCcEEeeCCCccCc------CCCCc
Q 015523 227 IANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVA-----------------SQGVKIIADKSISDA------AESVY 283 (405)
Q Consensus 227 ~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~-----------------~~g~~v~~~~~l~~~------~~~~~ 283 (405)
+.+||++.|+..|+++|+++|++++++|++++ .+.. ..+..+..+..++++ ++.+|
T Consensus 19 ~~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~-~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dY 97 (232)
T cd03148 19 FSTGNHPVEMLLPLYHLHAAGFDFDVATLSGL-PVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSEY 97 (232)
T ss_pred cCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhhc
Confidence 46899999999999999999999999999886 4321 134457778888887 45799
Q ss_pred cEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCC------CCCCeeecCcchhhhhh-------
Q 015523 284 DLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGL------LKAKKATAHPSVIGKLT------- 350 (405)
Q Consensus 284 D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGl------L~g~~~t~~~~~~~~l~------- 350 (405)
|+|++|||++.+..++.++.+.+++++++++||+|++||||+.+|..+++ ++||++|+++..++...
T Consensus 98 Dav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~~~ 177 (232)
T cd03148 98 AAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIGYM 177 (232)
T ss_pred eEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccccc
Confidence 99999999988889999999999999999999999999999999999998 99999999988766432
Q ss_pred -------------c--Cccc----CCcEEEcCCeEecCChhhHHHHHHHHHHHcc
Q 015523 351 -------------N--EVVN----GTKVVVDGKVITSRGLANVIDFALAIVSKFF 386 (405)
Q Consensus 351 -------------~--~~~~----~~~~v~dg~iiTa~g~~~~~~~~l~~i~~l~ 386 (405)
+ +.+. ...+|+||++||+++|.++..++.++++.++
T Consensus 178 ~~~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~~ 232 (232)
T cd03148 178 PGHLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEML 232 (232)
T ss_pred cCcccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHhC
Confidence 1 1122 3378999999999999999999999998763
No 36
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=99.93 E-value=5.3e-25 Score=185.94 Aligned_cols=137 Identities=42% Similarity=0.616 Sum_probs=122.5
Q ss_pred eEEEEeecCCceeecCCC---cEEeeCCCccCcCCCCccEEEEcCCccchHhhhcC-hHHHHHHHHHhhcCCEEEEEchH
Q 015523 249 DVVVASVERSTQIVASQG---VKIIADKSISDAAESVYDLIILPGGVAGAERLQKS-RILKKLLKEQKVAGRIYGAVCSS 324 (405)
Q Consensus 249 ~v~~vs~~~~~~v~~~~g---~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~-~~l~~~l~~~~~~~k~i~aic~g 324 (405)
+|+++++..++.++++.| .++.++..++++++.+||+|++|||+.....++.+ +.++++|+++++++|+|++||+|
T Consensus 1 ~V~~vs~~~~~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g 80 (147)
T PF01965_consen 1 KVDVVSPGDGKEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHG 80 (147)
T ss_dssp EEEEEESSSSSEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTC
T ss_pred CEEEEECCCCCeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCC
Confidence 588999988778999999 99999999999999999999999998667888755 99999999999999999999999
Q ss_pred HHHHHHcCCCCCCeeecCcchhhhhhc--CcccC--CcEEEcC-CeEecCChhhHHHHHHHHHHHc
Q 015523 325 PIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNG--TKVVVDG-KVITSRGLANVIDFALAIVSKF 385 (405)
Q Consensus 325 ~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~--~~~v~dg-~iiTa~g~~~~~~~~l~~i~~l 385 (405)
+.+|+++|+|+|+++|+++...+.++. ..+.+ ..+++|| |+||++++.++.+|++++++.|
T Consensus 81 ~~~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~~nlIT~~~~~~~~~fa~~ive~L 146 (147)
T PF01965_consen 81 PAVLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDGGNLITGRGPGSAIEFALAIVEAL 146 (147)
T ss_dssp HHHHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEETTTEEEESSGGGHHHHHHHHHHHH
T ss_pred cchhhccCccCCceeecCccHHHHHHHCCCEEEecCCCeEEECCeEEECCChhhHHHHHHHHHHHc
Confidence 999999999999999999998886665 44544 8899999 9999999999999999999986
No 37
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=99.92 E-value=3.8e-25 Score=199.18 Aligned_cols=157 Identities=19% Similarity=0.229 Sum_probs=131.3
Q ss_pred CCCchhhHHHHHHHHHhcCCEEEEEecCCCcee---------------------EeccCcEEecCcccCCCCCCcccEEE
Q 015523 26 FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEV---------------------EASSGTRLVADTSISNCSHQVFDLIA 84 (405)
Q Consensus 26 ~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v---------------------~~~~g~~v~~~~~~~~~~~~~~d~li 84 (405)
-|+...|+..|+++|+++|++|+++|+.++.++ .++.+..+..+..+++++..+||+|+
T Consensus 20 tG~~~~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~ 99 (231)
T cd03147 20 TGVFFSEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFF 99 (231)
T ss_pred cccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEE
Confidence 688999999999999999999999999764111 12344566778888998888999999
Q ss_pred EcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc-------CCCCCcceeeccCcc-------------
Q 015523 85 LPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW-------GLLRRKQITCHPAFT------------- 144 (405)
Q Consensus 85 ipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a-------gll~g~~~t~~~~~~------------- 144 (405)
||||+..+..+.+++.+.++|+++++++|+|++||+|++ +|+.+ ++++||++|+|+...
T Consensus 100 iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~-~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~ 178 (231)
T cd03147 100 VAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPA-ILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKR 178 (231)
T ss_pred ECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhccc
Confidence 999976667899999999999999999999999999987 67766 899999999998653
Q ss_pred ------ccCCC--Ccccc------CcEEEeCCeEcCCCcccHHHHHHHHHHHh
Q 015523 145 ------DKLPT--FWAVK------SNIHVSGEVTTSRGPGTSFEFALCLVEQL 183 (405)
Q Consensus 145 ------~~l~~--~~~~~------~~~v~dg~iiT~~g~~~~~~~~l~ii~~~ 183 (405)
+.+++ ..+.+ +.+|+|||+||++++.++.+|++.+++++
T Consensus 179 ~~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l 231 (231)
T cd03147 179 NLESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL 231 (231)
T ss_pred CCccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence 22332 34443 34999999999999999999999999874
No 38
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=99.92 E-value=5.1e-25 Score=198.25 Aligned_cols=157 Identities=26% Similarity=0.307 Sum_probs=132.2
Q ss_pred cCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEe--------------------ccCcEEecCcccCCCCCCcccEEE
Q 015523 25 GFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEA--------------------SSGTRLVADTSISNCSHQVFDLIA 84 (405)
Q Consensus 25 ~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~--------------------~~g~~v~~~~~~~~~~~~~~d~li 84 (405)
.+||.+.|+..|+++|+++|++|++++++++ ++.. ..+..+.++..+++++..+||+|+
T Consensus 17 ~~G~~~~E~~~p~~~l~~aG~~V~~as~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~ 95 (221)
T cd03141 17 PTGLWLEELAHPYDVFTEAGYEVDFASPKGG-KVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIF 95 (221)
T ss_pred cCccCHHHHHHHHHHHHHCCCeEEEECCCCC-CCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEE
Confidence 4799999999999999999999999999886 4221 234457888999999888999999
Q ss_pred EcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC------CCCCcceeeccCcccc------------
Q 015523 85 LPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG------LLRRKQITCHPAFTDK------------ 146 (405)
Q Consensus 85 ipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag------ll~g~~~t~~~~~~~~------------ 146 (405)
||||+.....+..++.+++||+++++++++|++||+|+. +|+++| +|+|+++|+||...+.
T Consensus 96 ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~-~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~ 174 (221)
T cd03141 96 IPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPA-ALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLL 174 (221)
T ss_pred ECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHH-HHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCH
Confidence 999953345677899999999999999999999999765 799999 7999999999976544
Q ss_pred ---CCC--Ccccc-----CcEEEeCCeEcCCCcccHHHHHHHHHHHh
Q 015523 147 ---LPT--FWAVK-----SNIHVSGEVTTSRGPGTSFEFALCLVEQL 183 (405)
Q Consensus 147 ---l~~--~~~~~-----~~~v~dg~iiT~~g~~~~~~~~l~ii~~~ 183 (405)
+++ ..+.+ ..+|+|+|+||++|+.++.+|++.+|+.+
T Consensus 175 ~~~l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l 221 (221)
T cd03141 175 EDELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL 221 (221)
T ss_pred HHHHHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence 333 33443 45999999999999999999999999864
No 39
>PRK04155 chaperone protein HchA; Provisional
Probab=99.91 E-value=4.1e-24 Score=197.41 Aligned_cols=166 Identities=18% Similarity=0.295 Sum_probs=133.6
Q ss_pred CcEEEEEec--------------CCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEec-----------------cCcE
Q 015523 17 ALNVLVPVG--------------FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS-----------------SGTR 65 (405)
Q Consensus 17 ~~ki~ill~--------------~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~-----------------~g~~ 65 (405)
.+||+|++. .|+...|+..|+++|+++|++|+++|++++ ++... .+..
T Consensus 49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~-~~~~d~~s~~~~d~~v~~~~~~~~~~ 127 (287)
T PRK04155 49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGN-PVKFEYWAMPHEDEAVMGFYEKYKSK 127 (287)
T ss_pred CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccccchhHHHHHHHhhhh
Confidence 458998885 478899999999999999999999999886 54321 1122
Q ss_pred EecCcccCCC----C--CCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC------CCC
Q 015523 66 LVADTSISNC----S--HQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG------LLR 133 (405)
Q Consensus 66 v~~~~~~~~~----~--~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag------ll~ 133 (405)
+..+..++++ . ..+||+|+||||+.....+.+++.+.++|+++++++|+|++||+|++ +|..+| +++
T Consensus 128 l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa-~Ll~a~~~~g~~ll~ 206 (287)
T PRK04155 128 FKQPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPA-ALLAAGVDHGDNPLN 206 (287)
T ss_pred ccCceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHcCCcCCCcccC
Confidence 2322223222 2 56899999999986678899999999999999999999999999987 577788 999
Q ss_pred CcceeeccCcc-------------------ccCCC--Ccccc----CcEEEeCCeEcCCCcccHHHHHHHHHHHhc
Q 015523 134 RKQITCHPAFT-------------------DKLPT--FWAVK----SNIHVSGEVTTSRGPGTSFEFALCLVEQLF 184 (405)
Q Consensus 134 g~~~t~~~~~~-------------------~~l~~--~~~~~----~~~v~dg~iiT~~g~~~~~~~~l~ii~~~~ 184 (405)
|+++|+++... +.|++ ..+++ ..+|+|||+||++|+.++.+|++.+++.+.
T Consensus 207 GkkvT~fp~~~e~~~~~~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll 282 (287)
T PRK04155 207 GYSICAFPDALDKQTPEIGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELL 282 (287)
T ss_pred CCEEeeCCCHHHhhccccccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHH
Confidence 99999988652 33443 45555 579999999999999999999999999875
No 40
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=99.91 E-value=1.2e-23 Score=185.29 Aligned_cols=170 Identities=28% Similarity=0.427 Sum_probs=149.9
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCC-ceeEeccC-cEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQ-LEVEASSG-TRLVADTSISNCSHQVFDLIALPGGMPGSVR 94 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~-~~v~~~~g-~~v~~~~~~~~~~~~~~d~liipgg~~~~~~ 94 (405)
++||++++++||...|+..|+++|+++++.++++++.++ ..+.+..| ..+.++..++++++.+||++++|||..++..
T Consensus 2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~ 81 (188)
T COG0693 2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY 81 (188)
T ss_pred CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh
Confidence 578999999999999999999999999999999999984 35666555 6777878888888779999999999545666
Q ss_pred cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC-CCCCcceeeccCccccCCC------CccccC-----cEEEeCC
Q 015523 95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG-LLRRKQITCHPAFTDKLPT------FWAVKS-----NIHVSGE 162 (405)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag-ll~g~~~t~~~~~~~~l~~------~~~~~~-----~~v~dg~ 162 (405)
...++.++++++++++++|+|++||+|++ +|+.+| +++|+++|+++...+.... ..+++. .++.||+
T Consensus 82 ~~~~~~~~~~v~~~~~~~k~vaaIC~g~~-~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~~~vv~dg~ 160 (188)
T COG0693 82 LRPDPDLLAFVRDFYANGKPVAAICHGPA-VLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGN 160 (188)
T ss_pred ccCcHHHHHHHHHHHHcCCEEEEEChhHH-HHhccccccCCceEeecCchHHHHHhHHHhcCceEeccccCcCCEEEECC
Confidence 67779999999999999999999999877 799999 9999999999887776554 677777 8999999
Q ss_pred -eEcCCCcccHHHHHHHHHHHhcChH
Q 015523 163 -VTTSRGPGTSFEFALCLVEQLFGES 187 (405)
Q Consensus 163 -iiT~~g~~~~~~~~l~ii~~~~g~~ 187 (405)
++|+.++.++.+++..+++++.+..
T Consensus 161 ~lvt~~~p~~~~~~~~~~~~~l~~~~ 186 (188)
T COG0693 161 ALVTGRNPASAPAFALELLKALGGAE 186 (188)
T ss_pred eEEEcCCcccHHHHHHHHHHHHhccc
Confidence 9999999999999999999987754
No 41
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=99.91 E-value=4.6e-24 Score=180.26 Aligned_cols=137 Identities=33% Similarity=0.502 Sum_probs=121.0
Q ss_pred EEEEEecCCCceeEeccC---cEEecCcccCCCCCCcccEEEEcCCchhhhccccC-hHHHHHHHHHHHcCCEEEEEccc
Q 015523 46 QVTMASVEPQLEVEASSG---TRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC-EILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 46 ~v~~vs~~~~~~v~~~~g---~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~-~~~~~~l~~~~~~~~~i~aic~g 121 (405)
+|+++++..++++++++| .++.+|..++++++.+||+|++|||+.....+..+ +.++++++++++++|+|++||+|
T Consensus 1 ~V~~vs~~~~~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g 80 (147)
T PF01965_consen 1 KVDVVSPGDGKEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHG 80 (147)
T ss_dssp EEEEEESSSSSEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTC
T ss_pred CEEEEECCCCCeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCC
Confidence 589999998878999999 99999999999999999999999996557778745 99999999999999999999998
Q ss_pred hHHhhhhcCCCCCcceeeccCccccCCC--Ccccc--CcEEEeC-CeEcCCCcccHHHHHHHHHHHh
Q 015523 122 PAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVK--SNIHVSG-EVTTSRGPGTSFEFALCLVEQL 183 (405)
Q Consensus 122 ~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~--~~~v~dg-~iiT~~g~~~~~~~~l~ii~~~ 183 (405)
+. +|+++|+|+|+++|+++...+.++. ..+.+ ..+++|+ |+||+.|+.++.+|++.+++.+
T Consensus 81 ~~-~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~~nlIT~~~~~~~~~fa~~ive~L 146 (147)
T PF01965_consen 81 PA-VLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDGGNLITGRGPGSAIEFALAIVEAL 146 (147)
T ss_dssp HH-HHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEETTTEEEESSGGGHHHHHHHHHHHH
T ss_pred cc-hhhccCccCCceeecCccHHHHHHHCCCEEEecCCCeEEECCeEEECCChhhHHHHHHHHHHHc
Confidence 75 7999999999999999998875554 56666 7799999 9999999999999999999986
No 42
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=99.90 E-value=1.3e-22 Score=180.70 Aligned_cols=150 Identities=24% Similarity=0.345 Sum_probs=123.5
Q ss_pred cCEEEEEeC-----CCCcHHHHHHHHHHHHhCCCeEEEEeecCCc----------eeecCCCcEEeeC-------CCccC
Q 015523 220 MPRVLIPIA-----NGSEEIEIVTIVDILRRAKVDVVVASVERST----------QIVASQGVKIIAD-------KSISD 277 (405)
Q Consensus 220 ~~~V~il~~-----~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~----------~v~~~~g~~v~~~-------~~l~~ 277 (405)
|+||+|++. +||++.|+..|++.|+++|++++++|++++. ++....++.+..+ ..+++
T Consensus 1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAE 80 (217)
T ss_pred CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhH
Confidence 468999998 9999999999999999999999999998751 1223344445443 57888
Q ss_pred cCCCCccEEEEcCCccchHh----------hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecC--cch
Q 015523 278 AAESVYDLIILPGGVAGAER----------LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAH--PSV 345 (405)
Q Consensus 278 ~~~~~~D~livpgG~~~~~~----------~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~--~~~ 345 (405)
+++.+||+|++|||++.+.. ++.++.+++++++|+++||+|++||+|+++|+.+.. +||++|++ +..
T Consensus 81 v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~-~gr~~T~~~~~~~ 159 (217)
T PRK11780 81 ADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG-AGVKLTIGNDEDT 159 (217)
T ss_pred CChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc-cCcEEEecCChhh
Confidence 88899999999999865433 355899999999999999999999999999998632 89999999 888
Q ss_pred hhhhhc--CcccCC---cEEEc--CCeEecCC
Q 015523 346 IGKLTN--EVVNGT---KVVVD--GKVITSRG 370 (405)
Q Consensus 346 ~~~l~~--~~~~~~---~~v~d--g~iiTa~g 370 (405)
+..+++ +.+.+. .+|+| ||+||+..
T Consensus 160 ~~~~~~aGa~~vd~~~~~vvvD~~~~lvt~~~ 191 (217)
T PRK11780 160 AAAIEKMGGEHVDCPVDDIVVDEENKVVTTPA 191 (217)
T ss_pred HHHHHHCCCEEEcCCCCeEEEECCCCEEeCCc
Confidence 888886 455554 67887 78999985
No 43
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=99.90 E-value=1.9e-23 Score=188.26 Aligned_cols=160 Identities=14% Similarity=0.235 Sum_probs=132.6
Q ss_pred EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEe-----------------ccCcEEecCcccCCC------CCC
Q 015523 22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEA-----------------SSGTRLVADTSISNC------SHQ 78 (405)
Q Consensus 22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~-----------------~~g~~v~~~~~~~~~------~~~ 78 (405)
-.+..||.+.|+..|+++|+++|++++++|++++ .+.. ..+..+..+..++++ +..
T Consensus 17 ~~~~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~-~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~ 95 (232)
T cd03148 17 KLFSTGNHPVEMLLPLYHLHAAGFDFDVATLSGL-PVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDS 95 (232)
T ss_pred CCcCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChh
Confidence 3446899999999999999999999999999886 4331 234446777777776 346
Q ss_pred cccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCC------CCCcceeeccCccccCC----
Q 015523 79 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGL------LRRKQITCHPAFTDKLP---- 148 (405)
Q Consensus 79 ~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agl------l~g~~~t~~~~~~~~l~---- 148 (405)
+||+|++|||+..+..++.++.+.++++++++++|+|++||+|++ +|..+++ ++||++|+++...+...
T Consensus 96 dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~-~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~ 174 (232)
T cd03148 96 EYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPA-AFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEI 174 (232)
T ss_pred hceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHhccCCCCCeeeCCcEEecCCCHHHHhhhhcc
Confidence 899999999987778899999999999999999999999999987 5777888 99999999988655321
Q ss_pred ----C--------------Ccccc----CcEEEeCCeEcCCCcccHHHHHHHHHHHh
Q 015523 149 ----T--------------FWAVK----SNIHVSGEVTTSRGPGTSFEFALCLVEQL 183 (405)
Q Consensus 149 ----~--------------~~~~~----~~~v~dg~iiT~~g~~~~~~~~l~ii~~~ 183 (405)
+ ..+.. ..+|+||++||++++.++..++..+|+.+
T Consensus 175 ~~~~~~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~ 231 (232)
T cd03148 175 GYMPGHLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEM 231 (232)
T ss_pred ccccCcccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHh
Confidence 1 22222 36999999999999999999999999876
No 44
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=99.88 E-value=4.7e-22 Score=175.80 Aligned_cols=153 Identities=24% Similarity=0.325 Sum_probs=121.7
Q ss_pred CCCCcHHHHHHHHHHHHhCCCeEEEEeecCCc----------eeecCCCcEEeeC-------CCccCcCCCCccEEEEcC
Q 015523 228 ANGSEEIEIVTIVDILRRAKVDVVVASVERST----------QIVASQGVKIIAD-------KSISDAAESVYDLIILPG 290 (405)
Q Consensus 228 ~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~----------~v~~~~g~~v~~~-------~~l~~~~~~~~D~livpg 290 (405)
+|||++.|+..|+++|+++|++++++|++++. .+....++.+.++ ..++++++.+||+|++||
T Consensus 11 ~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPG 90 (213)
T cd03133 11 YDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPG 90 (213)
T ss_pred CCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECC
Confidence 68999999999999999999999999997651 2333456666655 678888888999999999
Q ss_pred CccchHhh----------hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCc--chhhhhhc--CcccC
Q 015523 291 GVAGAERL----------QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHP--SVIGKLTN--EVVNG 356 (405)
Q Consensus 291 G~~~~~~~----------~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~--~~~~~l~~--~~~~~ 356 (405)
|+..+..+ +.++.+++++++|++++|+|++||+|+.+|+.++. +||++|+++ ..++.+++ ..+.+
T Consensus 91 G~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~-kGr~vT~~~~~~~~~~l~~aGa~~~d 169 (213)
T cd03133 91 GFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG-EGVEVTIGNDAGTAAAIEKMGAEHVN 169 (213)
T ss_pred CCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc-cCCeEEccCCHHHHHHHHHCCCEEEe
Confidence 98544443 34889999999999999999999999999999766 999999999 77888875 45543
Q ss_pred ---CcEEEc--CCeEecCCh---hhHHHHHHHH
Q 015523 357 ---TKVVVD--GKVITSRGL---ANVIDFALAI 381 (405)
Q Consensus 357 ---~~~v~d--g~iiTa~g~---~~~~~~~l~~ 381 (405)
..+|+| ||+|||+.. .+..+.++.+
T Consensus 170 ~~~~~vvvd~dg~lITs~~~~~~~~~~~~~~~~ 202 (213)
T cd03133 170 CPVEEIVVDEKNKVVTTPAYMLADSIHEIADGI 202 (213)
T ss_pred CCCCeEEEECCCCEEeCccccCCCCHHHHHHhH
Confidence 355665 799999854 3444544443
No 45
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=99.87 E-value=2.9e-21 Score=162.29 Aligned_cols=113 Identities=25% Similarity=0.367 Sum_probs=105.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 300 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~ 300 (405)
+||+|+++|||.+.|+..+.+.|+.+|++++++|++++ +++++.|.++.++..+++.++.+||+++||||......+..
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~-~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~ 80 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLG-GVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAP 80 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcC-ceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHcc
Confidence 68999999999999999999999999999999999998 99999999999999999986678999999999754455578
Q ss_pred ChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCC
Q 015523 301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLL 334 (405)
Q Consensus 301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL 334 (405)
++.+++||+++++++|+|+++|+|+++|+++|+|
T Consensus 81 ~~~l~~~l~~~~~~~~~I~aic~G~~~La~aGll 114 (142)
T cd03132 81 SGRALHFVTEAFKHGKPIGAVGEGSDLLEAAGIP 114 (142)
T ss_pred ChHHHHHHHHHHhcCCeEEEcCchHHHHHHcCCC
Confidence 8999999999999999999999999999999986
No 46
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=99.87 E-value=8.9e-22 Score=175.30 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=123.0
Q ss_pred CcEEEEEec-----CCCchhhHHHHHHHHHhcCCEEEEEecCCCc----------eeEeccCcEEecC-------cccCC
Q 015523 17 ALNVLVPVG-----FGTEEMEAVIIVDVLRRAGAQVTMASVEPQL----------EVEASSGTRLVAD-------TSISN 74 (405)
Q Consensus 17 ~~ki~ill~-----~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~----------~v~~~~g~~v~~~-------~~~~~ 74 (405)
|+||+|++. +||++.|+..|+++|+++|++++++|++++. ++....++.+.++ ..+++
T Consensus 1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAE 80 (217)
T ss_pred CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhH
Confidence 368999997 9999999999999999999999999998751 1233344444443 56778
Q ss_pred CCCCcccEEEEcCCchhhh----------ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeec--cC
Q 015523 75 CSHQVFDLIALPGGMPGSV----------RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCH--PA 142 (405)
Q Consensus 75 ~~~~~~d~liipgg~~~~~----------~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~--~~ 142 (405)
+++.+||+|++|||+.... .++.++.+.++++++++++|+|++||+|++ +|+.+.. +|+++|++ +.
T Consensus 81 v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~-iL~~~~~-~gr~~T~~~~~~ 158 (217)
T PRK11780 81 ADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPA-MLPKILG-AGVKLTIGNDED 158 (217)
T ss_pred CChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHH-HHHHHhc-cCcEEEecCChh
Confidence 8778999999999964332 235589999999999999999999999987 5776522 89999999 88
Q ss_pred ccccCCC--CccccC---cEEEe--CCeEcCCCccc
Q 015523 143 FTDKLPT--FWAVKS---NIHVS--GEVTTSRGPGT 171 (405)
Q Consensus 143 ~~~~l~~--~~~~~~---~~v~d--g~iiT~~g~~~ 171 (405)
....+++ ..|++. .+|+| +|+|||..-+.
T Consensus 159 ~~~~~~~aGa~~vd~~~~~vvvD~~~~lvt~~~~~~ 194 (217)
T PRK11780 159 TAAAIEKMGGEHVDCPVDDIVVDEENKVVTTPAYML 194 (217)
T ss_pred hHHHHHHCCCEEEcCCCCeEEEECCCCEEeCCcccC
Confidence 8888887 777775 67888 68999986443
No 47
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=99.85 E-value=1.6e-20 Score=157.84 Aligned_cols=114 Identities=21% Similarity=0.278 Sum_probs=103.7
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 96 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~ 96 (405)
++||+|+++|||+..|+..+.++|+.++++++++|++++ ++++++|..+.++.++++.+..+||+++||||......+.
T Consensus 1 ~~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~-~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~ 79 (142)
T cd03132 1 GRKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLG-GVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALA 79 (142)
T ss_pred CCEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcC-ceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHc
Confidence 368999999999999999999999999999999999998 9999999999999999988766899999999953344456
Q ss_pred cChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCC
Q 015523 97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLL 132 (405)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll 132 (405)
.++.+.+||+++++++++|+++|+| .++|+++|+|
T Consensus 80 ~~~~l~~~l~~~~~~~~~I~aic~G-~~~La~aGll 114 (142)
T cd03132 80 PSGRALHFVTEAFKHGKPIGAVGEG-SDLLEAAGIP 114 (142)
T ss_pred cChHHHHHHHHHHhcCCeEEEcCch-HHHHHHcCCC
Confidence 7899999999999999999999996 5589999997
No 48
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=99.85 E-value=3.7e-21 Score=170.12 Aligned_cols=152 Identities=22% Similarity=0.206 Sum_probs=119.5
Q ss_pred cCCCchhhHHHHHHHHHhcCCEEEEEecCCCc----------eeEeccCcEEecC-------cccCCCCCCcccEEEEcC
Q 015523 25 GFGTEEMEAVIIVDVLRRAGAQVTMASVEPQL----------EVEASSGTRLVAD-------TSISNCSHQVFDLIALPG 87 (405)
Q Consensus 25 ~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~----------~v~~~~g~~v~~~-------~~~~~~~~~~~d~liipg 87 (405)
+|||++.|+..|+++|+++|++++++|++++. .+..+.++.+.++ ..+++++..+||+|++||
T Consensus 11 ~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPG 90 (213)
T cd03133 11 YDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPG 90 (213)
T ss_pred CCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECC
Confidence 78999999999999999999999999997641 2333456666655 677787777899999999
Q ss_pred Cchhhhcc----------ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeecc--CccccCCC--Cccc
Q 015523 88 GMPGSVRL----------RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHP--AFTDKLPT--FWAV 153 (405)
Q Consensus 88 g~~~~~~~----------~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~--~~~~~l~~--~~~~ 153 (405)
|+.....+ +.++.++++++++++++|+|++||+|++ +|++++. +||++|+|+ ...+.+++ ..|.
T Consensus 91 G~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~-~L~~~~~-kGr~vT~~~~~~~~~~l~~aGa~~~ 168 (213)
T cd03133 91 GFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPA-LAAKILG-EGVEVTIGNDAGTAAAIEKMGAEHV 168 (213)
T ss_pred CCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHH-HHHHHhc-cCCeEEccCCHHHHHHHHHCCCEEE
Confidence 96433333 3478999999999999999999999987 5777655 999999999 77888876 6666
Q ss_pred c---CcEEEe--CCeEcCCCccc---HHHHHHH
Q 015523 154 K---SNIHVS--GEVTTSRGPGT---SFEFALC 178 (405)
Q Consensus 154 ~---~~~v~d--g~iiT~~g~~~---~~~~~l~ 178 (405)
+ ..+++| ||+|||..... .++.++.
T Consensus 169 d~~~~~vvvd~dg~lITs~~~~~~~~~~~~~~~ 201 (213)
T cd03133 169 NCPVEEIVVDEKNKVVTTPAYMLADSIHEIADG 201 (213)
T ss_pred eCCCCeEEEECCCCEEeCccccCCCCHHHHHHh
Confidence 4 356666 78999987643 3444444
No 49
>PRK11249 katE hydroperoxidase II; Provisional
Probab=99.71 E-value=2.4e-16 Score=160.85 Aligned_cols=151 Identities=15% Similarity=0.167 Sum_probs=125.4
Q ss_pred cChHHHHHHHHhcccccccCc------cc------cccccccccc--cCCcCEEEEEeCCCCcHHHHHHHHHHHHhCCCe
Q 015523 184 FGESVAKEIGELLLMHNADNS------LK------KEEFNEVEWF--FDRMPRVLIPIANGSEEIEIVTIVDILRRAKVD 249 (405)
Q Consensus 184 ~g~~~a~~~a~~l~~~~~~~~------~~------~~~~~~~~~~--~~~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~ 249 (405)
...+++++|++.|..+..+.. .. ....+++... .-+.+||+||++||++..|+..+.++|..+|..
T Consensus 547 vd~~l~~~va~~l~~~~~~~~~~~~~~~~~~~~~~s~als~~~~~~~~~~gRKIaILVaDG~d~~ev~~~~daL~~AGa~ 626 (752)
T PRK11249 547 IDLTLAQAVAENLGIPLTDEQLNITPPPDVNGLKKDPALSLYAIPDGDIKGRKVAILLNDGVDAADLLAILKALKAKGVH 626 (752)
T ss_pred HHHHHHHHHHHHhCCCCCCccccccCCCCcCCCCCCcchhccCCCCCCccccEEEEEecCCCCHHHHHHHHHHHHHCCCE
Confidence 457788999999988422110 00 1111111111 114689999999999999999999999999999
Q ss_pred EEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHH
Q 015523 250 VVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH 329 (405)
Q Consensus 250 v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La 329 (405)
++++|++++ +|+++.|..|.++.++++.++..||+|+||||......+..++.+++||+++++++|+|+++|+|+.+|+
T Consensus 627 V~VVSp~~G-~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLa 705 (752)
T PRK11249 627 AKLLYPRMG-EVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKA 705 (752)
T ss_pred EEEEECCCC-eEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHH
Confidence 999999998 9999999999999999998777899999999965667788899999999999999999999999999999
Q ss_pred HcCCCC
Q 015523 330 KHGLLK 335 (405)
Q Consensus 330 ~aGlL~ 335 (405)
++||.+
T Consensus 706 aAGL~~ 711 (752)
T PRK11249 706 ALKLPD 711 (752)
T ss_pred hcCCCC
Confidence 999965
No 50
>PRK11249 katE hydroperoxidase II; Provisional
Probab=99.66 E-value=1e-15 Score=156.31 Aligned_cols=117 Identities=17% Similarity=0.180 Sum_probs=108.1
Q ss_pred CCCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523 15 SFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 94 (405)
Q Consensus 15 ~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~ 94 (405)
.+++||+||++||++..++..+.++|+++|..+++++++++ +|+++.|..+.+|.++.+.++..||+|+||||......
T Consensus 595 ~~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G-~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~ 673 (752)
T PRK11249 595 IKGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMG-EVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIAD 673 (752)
T ss_pred ccccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-eEECCCCCEEecceeeccCCccCCCEEEECCCchhHHH
Confidence 46789999999999999999999999999999999999998 99999999999999999998778999999999545667
Q ss_pred cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCC
Q 015523 95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLR 133 (405)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~ 133 (405)
+..++.+++||+++++++|+|+++|+| ..+|+++|+.+
T Consensus 674 L~~d~~al~fL~eaykHgK~IAAiCaG-~~LLaaAGL~~ 711 (752)
T PRK11249 674 LADNGDARYYLLEAYKHLKPIALAGDA-RKLKAALKLPD 711 (752)
T ss_pred HhhCHHHHHHHHHHHHcCCEEEEeCcc-HHHHHhcCCCC
Confidence 788999999999999999999999996 45899999854
No 51
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.22 E-value=1.4e-10 Score=104.09 Aligned_cols=95 Identities=21% Similarity=0.301 Sum_probs=75.9
Q ss_pred CEEEEEeCCCCc-HHHHHHHHHHHH-hCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH--
Q 015523 221 PRVLIPIANGSE-EIEIVTIVDILR-RAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-- 296 (405)
Q Consensus 221 ~~V~il~~~g~~-~~e~~~~~~~l~-~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~-- 296 (405)
+||+|+.++|.+ +.|+ ...|+ .+|+++..++.+.. ++ ++||+|++|||....+
T Consensus 1 ~~v~Vl~~~G~n~~~d~---~~a~~~~~G~~~~~v~~~~~------------------~l--~~~D~lvipGG~~~~d~l 57 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDM---ARALRDLLGAEPEYVWHKET------------------DL--DGVDAVVLPGGFSYGDYL 57 (219)
T ss_pred CEEEEEecCCcChHHHH---HHHHHhcCCCeEEEEecCcC------------------CC--CCCCEEEECCCCchhhhh
Confidence 589999999987 5665 67777 78998888765321 22 5799999999964222
Q ss_pred ---hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCe
Q 015523 297 ---RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKK 338 (405)
Q Consensus 297 ---~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~ 338 (405)
.......+.+||+++.+++++|++||+|.++|+++|||+|+-
T Consensus 58 ~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l 102 (219)
T PRK03619 58 RCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGAL 102 (219)
T ss_pred ccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeE
Confidence 233457899999999999999999999999999999999853
No 52
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.21 E-value=8.6e-11 Score=107.01 Aligned_cols=128 Identities=17% Similarity=0.150 Sum_probs=91.4
Q ss_pred EEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh--
Q 015523 223 VLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ-- 299 (405)
Q Consensus 223 V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~-- 299 (405)
|+|+.++|. ++.| ..+.|+++|+++.+++.+.. +.. +.+..+||+|++|||....+.+.
T Consensus 1 v~vl~~pG~n~~~~---~~~al~~aG~~v~~v~~~~~--~~~-------------~~~l~~~d~liipGG~~~~d~l~~~ 62 (238)
T cd01740 1 VAVLRFPGSNCDRD---MAYAFELAGFEAEDVWHNDL--LAG-------------RKDLDDYDGVVLPGGFSYGDYLRAG 62 (238)
T ss_pred CEEEEcCCcCCHHH---HHHHHHHcCCCEEEEeccCC--ccc-------------cCCHhhCCEEEECCCCCcccccccc
Confidence 689999997 6776 66778889999999877541 111 11236799999999964333222
Q ss_pred ---cChH-HHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc-CcccCCcEEEcCCeEecC
Q 015523 300 ---KSRI-LKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN-EVVNGTKVVVDGKVITSR 369 (405)
Q Consensus 300 ---~~~~-l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~-~~~~~~~~v~dg~iiTa~ 369 (405)
.... +.++|+++.+++++|++||.|..+|+++|+|+|+. +.++........ ..+.+..++.+++++|+.
T Consensus 63 ~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~-~~~~~~~~~~~~~~~~v~~~v~~~~si~t~~ 136 (238)
T cd01740 63 AIAAASPLLMEEVKEFAERGGLVLGICNGFQILVELGLLPGAL-IRNKGLKFICRWQNRFVTLRVENNDSPFTKG 136 (238)
T ss_pred cccccChhHHHHHHHHHhCCCeEEEECcHHHHHHHcCCCcccc-ccCCCCceeccccCceEEEEEcCCCCceecC
Confidence 1223 89999999999999999999999999999999976 555443322221 233455567788888876
No 53
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.19 E-value=1.5e-10 Score=106.03 Aligned_cols=99 Identities=26% Similarity=0.370 Sum_probs=75.0
Q ss_pred cCEEEEEeCCCCc-HHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523 220 MPRVLIPIANGSE-EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 298 (405)
Q Consensus 220 ~~~V~il~~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~ 298 (405)
++||+|++++|++ +.|+ .+.|+++|+.+.+++.... .+ .-.+ .++||+|++|||....+.+
T Consensus 3 ~~kvaVl~~pG~n~d~e~---~~Al~~aG~~v~~v~~~~~------------~~-~~~~--l~~~DgLvipGGfs~gD~l 64 (261)
T PRK01175 3 SIRVAVLRMEGTNCEDET---VKAFRRLGVEPEYVHINDL------------AA-ERKS--VSDYDCLVIPGGFSAGDYI 64 (261)
T ss_pred CCEEEEEeCCCCCCHHHH---HHHHHHCCCcEEEEeeccc------------cc-cccc--hhhCCEEEECCCCCccccc
Confidence 4799999999995 6654 6888889999999876531 00 0112 3679999999996332322
Q ss_pred hcC--------hHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCC
Q 015523 299 QKS--------RILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKA 336 (405)
Q Consensus 299 ~~~--------~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g 336 (405)
... +.+.+.|+++.+++|+|.+||.|..+|+++|+|.|
T Consensus 65 ~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg 110 (261)
T PRK01175 65 RAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPG 110 (261)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCC
Confidence 211 23558889999999999999999999999999988
No 54
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.09 E-value=6.8e-10 Score=101.12 Aligned_cols=128 Identities=19% Similarity=0.122 Sum_probs=90.5
Q ss_pred EEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc--
Q 015523 20 VLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR-- 96 (405)
Q Consensus 20 i~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~-- 96 (405)
|+||.++|.+ +.| ..++|+++|+++.+++.... +.. .....+||+|++|||....+.+.
T Consensus 1 v~vl~~pG~n~~~~---~~~al~~aG~~v~~v~~~~~--~~~-------------~~~l~~~d~liipGG~~~~d~l~~~ 62 (238)
T cd01740 1 VAVLRFPGSNCDRD---MAYAFELAGFEAEDVWHNDL--LAG-------------RKDLDDYDGVVLPGGFSYGDYLRAG 62 (238)
T ss_pred CEEEEcCCcCCHHH---HHHHHHHcCCCEEEEeccCC--ccc-------------cCCHhhCCEEEECCCCCcccccccc
Confidence 5899999985 444 57888899999999976542 111 11223799999999953223222
Q ss_pred ---cChH-HHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-CccccCcEEEeCCeEcCC
Q 015523 97 ---DCEI-LKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FWAVKSNIHVSGEVTTSR 167 (405)
Q Consensus 97 ---~~~~-~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~~~~~~~~v~dg~iiT~~ 167 (405)
.... +.++|+++.+++++|++||.|.. +|+++|+|.|+. +.++........ ..+++..++.+++++|+.
T Consensus 63 ~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~Q-lL~~~gll~g~~-~~~~~~~~~~~~~~~~v~~~v~~~~si~t~~ 136 (238)
T cd01740 63 AIAAASPLLMEEVKEFAERGGLVLGICNGFQ-ILVELGLLPGAL-IRNKGLKFICRWQNRFVTLRVENNDSPFTKG 136 (238)
T ss_pred cccccChhHHHHHHHHHhCCCeEEEECcHHH-HHHHcCCCcccc-ccCCCCceeccccCceEEEEEcCCCCceecC
Confidence 1223 88999999999999999999776 799999999866 555543332222 345666677788899876
No 55
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.06 E-value=1.5e-09 Score=97.50 Aligned_cols=94 Identities=23% Similarity=0.252 Sum_probs=73.3
Q ss_pred cEEEEEecCCCc-hhhHHHHHHHHH-hcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh--
Q 015523 18 LNVLVPVGFGTE-EMEAVIIVDVLR-RAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-- 93 (405)
Q Consensus 18 ~ki~ill~~g~~-~~e~~~~~~~l~-~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~-- 93 (405)
|||+||.++|.+ +.|+ .+.|+ ..|+++..+..+.. ++ .+||+|++|||....+
T Consensus 1 ~~v~Vl~~~G~n~~~d~---~~a~~~~~G~~~~~v~~~~~------------------~l--~~~D~lvipGG~~~~d~l 57 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDM---ARALRDLLGAEPEYVWHKET------------------DL--DGVDAVVLPGGFSYGDYL 57 (219)
T ss_pred CEEEEEecCCcChHHHH---HHHHHhcCCCeEEEEecCcC------------------CC--CCCCEEEECCCCchhhhh
Confidence 489999999988 4555 77787 78999888865321 23 3699999999953222
Q ss_pred ---ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCc
Q 015523 94 ---RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRK 135 (405)
Q Consensus 94 ---~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~ 135 (405)
.......+.+||+++++++++|++||+|. .+|+++|+|+|+
T Consensus 58 ~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~-qlLa~~GLL~g~ 101 (219)
T PRK03619 58 RCGAIAAFSPIMKAVKEFAEKGKPVLGICNGF-QILTEAGLLPGA 101 (219)
T ss_pred ccchhhhchHHHHHHHHHHHCCCEEEEECHHH-HHHHHcCCCCCe
Confidence 22345788999999999999999999965 589999999984
No 56
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.01 E-value=2.3e-09 Score=98.23 Aligned_cols=100 Identities=25% Similarity=0.334 Sum_probs=73.3
Q ss_pred CcEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523 17 ALNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 95 (405)
Q Consensus 17 ~~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~ 95 (405)
.+||+|+.++|++ +.|. .++|+++|+++.++..... .+. -.+. .+||+|++|||+...+.+
T Consensus 3 ~~kvaVl~~pG~n~d~e~---~~Al~~aG~~v~~v~~~~~------------~~~-~~~l--~~~DgLvipGGfs~gD~l 64 (261)
T PRK01175 3 SIRVAVLRMEGTNCEDET---VKAFRRLGVEPEYVHINDL------------AAE-RKSV--SDYDCLVIPGGFSAGDYI 64 (261)
T ss_pred CCEEEEEeCCCCCCHHHH---HHHHHHCCCcEEEEeeccc------------ccc-ccch--hhCCEEEECCCCCccccc
Confidence 4699999999998 5444 7889899999999976531 000 0112 479999999995322322
Q ss_pred ccC--------hHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCc
Q 015523 96 RDC--------EILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRK 135 (405)
Q Consensus 96 ~~~--------~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~ 135 (405)
... +.+.+.|+++.+++++|.+||+|.. +|+++|+|.|.
T Consensus 65 ~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~Q-lLa~~GlLpg~ 111 (261)
T PRK01175 65 RAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQ-VLVELGLLPGF 111 (261)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHH-HHHHCCCCCCC
Confidence 221 2345788999999999999999766 79999999873
No 57
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=98.98 E-value=6.2e-09 Score=94.14 Aligned_cols=94 Identities=22% Similarity=0.307 Sum_probs=74.3
Q ss_pred CEEEEEeCCCCc-HHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh--
Q 015523 221 PRVLIPIANGSE-EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-- 297 (405)
Q Consensus 221 ~~V~il~~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~-- 297 (405)
|||+|+.++|.+ +.|+. +.|+++|+.+.++..... ++ +++|+|++|||....+.
T Consensus 1 ~~v~Vl~~~G~n~~~~~~---~al~~~G~~~~~i~~~~~------------------~l--~~~d~lilpGG~~~~d~~~ 57 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTV---YALRLLGVDAEIVWYEDG------------------SL--PDYDGVVLPGGFSYGDYLR 57 (227)
T ss_pred CeEEEEeCCCcCcHHHHH---HHHHHCCCeEEEEecCCC------------------CC--CCCCEEEECCCCccccccc
Confidence 589999999884 67764 777789999888854321 12 46999999999632221
Q ss_pred ---hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCC
Q 015523 298 ---LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAK 337 (405)
Q Consensus 298 ---~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~ 337 (405)
+..+..+.++|+++.+++++|.+||.|..+|+.+|+|+|.
T Consensus 58 ~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~ 100 (227)
T TIGR01737 58 AGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGA 100 (227)
T ss_pred ccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCc
Confidence 2345678899999999999999999999999999999884
No 58
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.89 E-value=1.7e-08 Score=87.96 Aligned_cols=95 Identities=19% Similarity=0.295 Sum_probs=76.7
Q ss_pred cCEEEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523 220 MPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 298 (405)
Q Consensus 220 ~~~V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~ 298 (405)
++||+|+.++|. ++.|+..+.+ ++|++.+.+..+.. .+. .+||+|++|||+.--+.+
T Consensus 2 ~~kvaVi~fpGtN~d~d~~~A~~---~aG~~~~~V~~~d~---------------~~~----~~~d~vv~pGGFSyGDyL 59 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDMAAAFE---RAGFEAEDVWHSDL---------------LLG----RDFDGVVLPGGFSYGDYL 59 (231)
T ss_pred CceEEEEEcCCcCchHHHHHHHH---HcCCCceEEEeeec---------------ccC----CCccEEEEcCCCCccccc
Confidence 589999999997 7888765555 78988888866652 111 179999999998533332
Q ss_pred -----hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCC
Q 015523 299 -----QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKA 336 (405)
Q Consensus 299 -----~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g 336 (405)
..-..+++-++++..+|+++.+||+|-.+|.++|||.|
T Consensus 60 r~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPG 102 (231)
T COG0047 60 RAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILSEAGLLPG 102 (231)
T ss_pred CcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCc
Confidence 33478999999999999999999999999999999999
No 59
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.87 E-value=2.3e-08 Score=78.74 Aligned_cols=92 Identities=30% Similarity=0.445 Sum_probs=78.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcCh
Q 015523 223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSR 302 (405)
Q Consensus 223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~ 302 (405)
|++++++++...++..+.+.|+.+++.+++++.+++ ...+ .+ ...+||++++|||.........+.
T Consensus 1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~-----------~~--~~~~~d~lii~g~~~~~~~~~~~~ 66 (115)
T cd01653 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGG-PVES-----------DV--DLDDYDGLILPGGPGTPDDLARDE 66 (115)
T ss_pred CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCC-ceec-----------cC--ChhccCEEEECCCCCchhhhccCH
Confidence 578899999999999999999999999999999987 4444 12 337899999999974444333578
Q ss_pred HHHHHHHHHhhcCCEEEEEchHHHHH
Q 015523 303 ILKKLLKEQKVAGRIYGAVCSSPIVL 328 (405)
Q Consensus 303 ~l~~~l~~~~~~~k~i~aic~g~~~L 328 (405)
.++++++++..++++++++|.|+.++
T Consensus 67 ~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 67 ALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHHHHHcCCEEEEECchhHhH
Confidence 99999999999999999999999999
No 60
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=98.82 E-value=3.8e-08 Score=89.00 Aligned_cols=93 Identities=24% Similarity=0.245 Sum_probs=71.7
Q ss_pred cEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc--
Q 015523 18 LNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR-- 94 (405)
Q Consensus 18 ~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~-- 94 (405)
|||+|+.++|.+ +.|+ .+.|++.|+++.++..... .+ .++|+|++|||....+.
T Consensus 1 ~~v~Vl~~~G~n~~~~~---~~al~~~G~~~~~i~~~~~------------------~l--~~~d~lilpGG~~~~d~~~ 57 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDT---VYALRLLGVDAEIVWYEDG------------------SL--PDYDGVVLPGGFSYGDYLR 57 (227)
T ss_pred CeEEEEeCCCcCcHHHH---HHHHHHCCCeEEEEecCCC------------------CC--CCCCEEEECCCCccccccc
Confidence 589999999886 4566 4888889999988854321 12 26999999999522221
Q ss_pred ---cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCC
Q 015523 95 ---LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRR 134 (405)
Q Consensus 95 ---~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g 134 (405)
...+..+.++|+++.+.+++|.+||.|.. +|+++|+|+|
T Consensus 58 ~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~Q-lLa~~GlL~G 99 (227)
T TIGR01737 58 AGAIAAASPIMQEVREFAEKGVPVLGICNGFQ-ILVEAGLLPG 99 (227)
T ss_pred ccchhcchHHHHHHHHHHHcCCEEEEECHHHH-HHHHcCCCCC
Confidence 22356788999999999999999999654 8999999988
No 61
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.78 E-value=3.9e-08 Score=85.82 Aligned_cols=95 Identities=24% Similarity=0.204 Sum_probs=73.6
Q ss_pred CcEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523 17 ALNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 95 (405)
Q Consensus 17 ~~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~ 95 (405)
++||+|+.++|.+ +.|.. ..|+++|++.+.+.-+.. ... .+||+|++|||+.-.+.+
T Consensus 2 ~~kvaVi~fpGtN~d~d~~---~A~~~aG~~~~~V~~~d~------------------~~~-~~~d~vv~pGGFSyGDyL 59 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDMA---AAFERAGFEAEDVWHSDL------------------LLG-RDFDGVVLPGGFSYGDYL 59 (231)
T ss_pred CceEEEEEcCCcCchHHHH---HHHHHcCCCceEEEeeec------------------ccC-CCccEEEEcCCCCccccc
Confidence 4699999999987 56654 445578999888876553 111 169999999997433433
Q ss_pred c-----cChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCC
Q 015523 96 R-----DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRR 134 (405)
Q Consensus 96 ~-----~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g 134 (405)
+ .-.++++-++++.++++++.+||+|-. +|.++|||.|
T Consensus 60 r~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQ-iL~e~gLlPG 102 (231)
T COG0047 60 RAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQ-ILSEAGLLPG 102 (231)
T ss_pred CcchHHhhHHHHHHHHHHHHCCCeEEEEcchhH-HHHHcCcCCc
Confidence 3 236789999999999999999999877 7889999999
No 62
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.77 E-value=5.7e-08 Score=79.37 Aligned_cols=165 Identities=22% Similarity=0.275 Sum_probs=108.3
Q ss_pred CcEEEEEe-----cCCCchhhHHHHHHHHHhcCCEEEEEecCCCce--eEeccCcEEe---------------cCcccCC
Q 015523 17 ALNVLVPV-----GFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLE--VEASSGTRLV---------------ADTSISN 74 (405)
Q Consensus 17 ~~ki~ill-----~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~--v~~~~g~~v~---------------~~~~~~~ 74 (405)
+|||++++ |||....|-...+-.+.+.|.++...+|+..+. |.--.|.... --.++++
T Consensus 1 mKkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~Q~hViNHlTGE~m~EtRNVLvEsARIaRG~i~~l~~ 80 (217)
T COG3155 1 MKKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQQVHVINHLTGEAMPETRNVLVESARIARGEIRPLAQ 80 (217)
T ss_pred CceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCchhhhhhhhccccccchhhhHHHHHHHHhhccccchhh
Confidence 57899997 889999999999999999999999999988522 1111111111 1124556
Q ss_pred CCCCcccEEEEcCCchhhhccc----------cChHHHHHHHHHHHcCCEEEEEccchHHhhhh-cCCCCCcceeec--c
Q 015523 75 CSHQVFDLIALPGGMPGSVRLR----------DCEILKKITSKQAEEKRLYGAICAAPAVTLLP-WGLLRRKQITCH--P 141 (405)
Q Consensus 75 ~~~~~~d~liipgg~~~~~~~~----------~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~-agll~g~~~t~~--~ 141 (405)
.++.+||++++|||+.....+. -++++.+..+.+++.+||++-+|-+++. |.+ .|. +.+.|.- .
T Consensus 81 a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m-~pki~g~--~~~~TIGnD~ 157 (217)
T COG3155 81 ADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAM-LPKIFGF--PLRLTIGNDI 157 (217)
T ss_pred cCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHH-HHHHcCC--ceeEEecCCc
Confidence 6677899999999975444432 3688999999999999999999999884 443 342 3344432 2
Q ss_pred CccccCCC--Ccccc---CcEEE--eCCeEcCCCcccHHHHHHHHHHHhcChHH
Q 015523 142 AFTDKLPT--FWAVK---SNIHV--SGEVTTSRGPGTSFEFALCLVEQLFGESV 188 (405)
Q Consensus 142 ~~~~~l~~--~~~~~---~~~v~--dg~iiT~~g~~~~~~~~l~ii~~~~g~~~ 188 (405)
.-.+.|++ ...++ ..+|+ +.+++| +.++-++..|-+.-.|.+.
T Consensus 158 dTa~a~~~mG~eHv~cPvd~iV~D~~~Kvvt----TPAYMLA~~IaeAAsGIdK 207 (217)
T COG3155 158 DTAEALEEMGAEHVPCPVDDIVVDEDNKVVT----TPAYMLAQNIAEAASGIDK 207 (217)
T ss_pred cHHHHHHHhCcccCCCCccceeecCCCceec----ChHHHHHHHHHHHHhhHHH
Confidence 23334444 22221 22444 357777 4456677777777666543
No 63
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.76 E-value=8.7e-08 Score=78.29 Aligned_cols=148 Identities=24% Similarity=0.319 Sum_probs=103.0
Q ss_pred cCEEEEEe-----CCCCcHHHHHHHHHHHHhCCCeEEEEeecCCcee------ecC-----CCcEEee-------CCCcc
Q 015523 220 MPRVLIPI-----ANGSEEIEIVTIVDILRRAKVDVVVASVERSTQI------VAS-----QGVKIIA-------DKSIS 276 (405)
Q Consensus 220 ~~~V~il~-----~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v------~~~-----~g~~v~~-------~~~l~ 276 (405)
|++|++++ |||.+-.|-...+..+.+.|.++...+|+.. .. +++ .+..++. -..+.
T Consensus 1 mKkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~-Q~hViNHlTGE~m~EtRNVLvEsARIaRG~i~~l~ 79 (217)
T COG3155 1 MKKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQ-QVHVINHLTGEAMPETRNVLVESARIARGEIRPLA 79 (217)
T ss_pred CceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCch-hhhhhhhccccccchhhhHHHHHHHHhhccccchh
Confidence 57899996 7999999999999999999999999999864 21 111 1111111 12345
Q ss_pred CcCCCCccEEEEcCCccchHhhh----------cChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeec--Ccc
Q 015523 277 DAAESVYDLIILPGGVAGAERLQ----------KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATA--HPS 344 (405)
Q Consensus 277 ~~~~~~~D~livpgG~~~~~~~~----------~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~--~~~ 344 (405)
+.++.+||++|+|||++...++. -++++....+.+++.||+++-+|-++.+|... +=.+.+.|. .+.
T Consensus 80 ~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki-~g~~~~~TIGnD~d 158 (217)
T COG3155 80 QADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKI-FGFPLRLTIGNDID 158 (217)
T ss_pred hcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHH-cCCceeEEecCCcc
Confidence 56778999999999997666643 37899999999999999999999999999873 112334444 234
Q ss_pred hhhhhhc------CcccCCcEEE-cCCeEecC
Q 015523 345 VIGKLTN------EVVNGTKVVV-DGKVITSR 369 (405)
Q Consensus 345 ~~~~l~~------~~~~~~~~v~-dg~iiTa~ 369 (405)
..+.+++ ....+..++. +.+++|..
T Consensus 159 Ta~a~~~mG~eHv~cPvd~iV~D~~~KvvtTP 190 (217)
T COG3155 159 TAEALEEMGAEHVPCPVDDIVVDEDNKVVTTP 190 (217)
T ss_pred HHHHHHHhCcccCCCCccceeecCCCceecCh
Confidence 4555554 1233444444 45777754
No 64
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.73 E-value=8.1e-08 Score=85.27 Aligned_cols=92 Identities=26% Similarity=0.317 Sum_probs=75.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH-hhh
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-RLQ 299 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~-~~~ 299 (405)
|||+|++.+|+....+..+.+.|+..|+.++++..+.. +++ .+||++++|||..... .+.
T Consensus 1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~-----------------~~l--~~~d~iii~GG~~~~~~~~~ 61 (200)
T PRK13527 1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRP-----------------GDL--PDCDALIIPGGESTTIGRLM 61 (200)
T ss_pred CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCCh-----------------HHh--ccCCEEEECCCcHHHHHHHH
Confidence 58999999999999999999999999988887765421 233 5799999999964321 233
Q ss_pred cChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
....+.++|+++..++++|.+||.|..+|+.+
T Consensus 62 ~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~ 93 (200)
T PRK13527 62 KREGILDEIKEKIEEGLPILGTCAGLILLAKE 93 (200)
T ss_pred hhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence 45568999999999999999999999999987
No 65
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.67 E-value=2.2e-07 Score=73.00 Aligned_cols=92 Identities=30% Similarity=0.345 Sum_probs=74.4
Q ss_pred EEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccCh
Q 015523 20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCE 99 (405)
Q Consensus 20 i~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~ 99 (405)
|++++.+++...++..+.+.|+++++++++++.+.+ +..+ .....+||++++|||.........+.
T Consensus 1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~d~lii~g~~~~~~~~~~~~ 66 (115)
T cd01653 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLARDE 66 (115)
T ss_pred CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCC-ceec-------------cCChhccCEEEECCCCCchhhhccCH
Confidence 578999999999999999999999999999999987 5544 12224799999999853333222468
Q ss_pred HHHHHHHHHHHcCCEEEEEccchHHhh
Q 015523 100 ILKKITSKQAEEKRLYGAICAAPAVTL 126 (405)
Q Consensus 100 ~~~~~l~~~~~~~~~i~aic~g~~~~L 126 (405)
.++++++++..++++++++|.|.. ++
T Consensus 67 ~~~~~i~~~~~~~~~i~~~c~g~~-~l 92 (115)
T cd01653 67 ALLALLREAAAAGKPILGICLGAQ-LL 92 (115)
T ss_pred HHHHHHHHHHHcCCEEEEECchhH-hH
Confidence 999999999999999999999644 45
No 66
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.59 E-value=1.8e-07 Score=80.14 Aligned_cols=89 Identities=20% Similarity=0.305 Sum_probs=66.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH--hh
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE--RL 298 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~--~~ 298 (405)
+||+|+..+|.... -...|++.|+++.++... +++ .+||.|++|||. ... .+
T Consensus 3 ~~igVLalqG~~~E----h~~al~~lG~~v~~v~~~-------------------~~l--~~~D~LILPGG~-~t~~~~l 56 (179)
T PRK13526 3 QKVGVLAIQGGYQK----HADMFKSLGVEVKLVKFN-------------------NDF--DSIDRLVIPGGE-STTLLNL 56 (179)
T ss_pred cEEEEEECCccHHH----HHHHHHHcCCcEEEECCH-------------------HHH--hCCCEEEECCCh-HHHHHHH
Confidence 78999999987655 456667778765554311 223 579999999995 444 45
Q ss_pred hcChHHHHHHHHHhhcCCEEEEEchHHHHHHH----cCCCCC
Q 015523 299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK----HGLLKA 336 (405)
Q Consensus 299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~----aGlL~g 336 (405)
.++..+.+.|+++.+ +|++.+||.|+.+|++ .|++++
T Consensus 57 l~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~~s~~Lg~idg 97 (179)
T PRK13526 57 LNKHQIFDKLYNFCS-SKPVFGTCAGSIILSKGEGYLNLLDL 97 (179)
T ss_pred hhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHccCCCCCCccE
Confidence 566679999999875 7899999999999999 445554
No 67
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.56 E-value=2.1e-07 Score=69.78 Aligned_cols=92 Identities=33% Similarity=0.478 Sum_probs=73.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcCh
Q 015523 223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSR 302 (405)
Q Consensus 223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~ 302 (405)
|+++.+++....++..+.+.+.+.++.+.+++.... .... .....++|++++|||.........+.
T Consensus 1 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~~~lii~g~~~~~~~~~~~~ 66 (92)
T cd03128 1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLAWDE 66 (92)
T ss_pred CEEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCC-cccc-------------cCCcccCCEEEECCCCcchhhhccCH
Confidence 467778888777889999999999999999999986 3333 12337899999999964333333478
Q ss_pred HHHHHHHHHhhcCCEEEEEchHHHHH
Q 015523 303 ILKKLLKEQKVAGRIYGAVCSSPIVL 328 (405)
Q Consensus 303 ~l~~~l~~~~~~~k~i~aic~g~~~L 328 (405)
.+++++.++..++++++++|.|+.++
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 67 ALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred HHHHHHHHHHHcCCEEEEEecccccC
Confidence 99999999999999999999998753
No 68
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.56 E-value=2.9e-07 Score=81.69 Aligned_cols=92 Identities=20% Similarity=0.152 Sum_probs=72.1
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh-hccc
Q 015523 18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-VRLR 96 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~-~~~~ 96 (405)
|||++++.+|+.......+.+.|+..+++++++..+.. .+++ +||++|+|||.... ..+.
T Consensus 1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~-----------------~~l~--~~d~iii~GG~~~~~~~~~ 61 (200)
T PRK13527 1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRP-----------------GDLP--DCDALIIPGGESTTIGRLM 61 (200)
T ss_pred CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCCh-----------------HHhc--cCCEEEECCCcHHHHHHHH
Confidence 58999999999999999999999999988887765421 1232 69999999994221 1223
Q ss_pred cChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
....+.++|++++++++||.+||.|.. +|+.+
T Consensus 62 ~~~~~~~~i~~~~~~~~pilGIC~G~Q-ll~~~ 93 (200)
T PRK13527 62 KREGILDEIKEKIEEGLPILGTCAGLI-LLAKE 93 (200)
T ss_pred hhccHHHHHHHHHHCCCeEEEECHHHH-HHHhh
Confidence 445689999999999999999999766 67775
No 69
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.55 E-value=2.6e-07 Score=84.53 Aligned_cols=98 Identities=19% Similarity=0.307 Sum_probs=69.3
Q ss_pred CEEEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh-
Q 015523 221 PRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL- 298 (405)
Q Consensus 221 ~~V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~- 298 (405)
+||+|++++|. ++.|+ ...|+.+|++++.+..+. ... .+.+..+||+|++|||....+.+
T Consensus 2 pkV~Vl~~pGtNce~e~---~~A~~~aG~~~~~v~~~d--l~~-------------~~~~l~~~~~lvipGGFS~gD~l~ 63 (259)
T PF13507_consen 2 PKVAVLRFPGTNCERET---AAAFENAGFEPEIVHIND--LLS-------------GESDLDDFDGLVIPGGFSYGDYLR 63 (259)
T ss_dssp -EEEEEE-TTEEEHHHH---HHHHHCTT-EEEEEECCH--HHT-------------TS--GCC-SEEEE-EE-GGGGTTS
T ss_pred CEEEEEECCCCCCHHHH---HHHHHHcCCCceEEEEEe--ccc-------------ccCchhhCcEEEECCccCccccch
Confidence 69999999997 77774 456778999999887543 100 11133789999999988533332
Q ss_pred ---------hcChHHHHHHHHHhhc-CCEEEEEchHHHHHHHcCCCCC
Q 015523 299 ---------QKSRILKKLLKEQKVA-GRIYGAVCSSPIVLHKHGLLKA 336 (405)
Q Consensus 299 ---------~~~~~l~~~l~~~~~~-~k~i~aic~g~~~La~aGlL~g 336 (405)
..+..+++.|++|.++ ++++.+||+|-.+|.++|||.+
T Consensus 64 sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~ 111 (259)
T PF13507_consen 64 SGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPG 111 (259)
T ss_dssp TTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCC
Confidence 2346778999999988 9999999999999999999998
No 70
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=98.53 E-value=3.1e-07 Score=80.20 Aligned_cols=85 Identities=20% Similarity=0.225 Sum_probs=67.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch-Hhhhc
Q 015523 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-ERLQK 300 (405)
Q Consensus 222 ~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~-~~~~~ 300 (405)
||+|+..+|.... ..+.|++.|+++.++++. +++ +++|++++|||.... ..+..
T Consensus 1 ~igvl~~qg~~~e----~~~~l~~~g~~~~~v~~~-------------------~~l--~~~d~liipGG~~~~~~~l~~ 55 (184)
T TIGR03800 1 KIGVLALQGAVRE----HARALEALGVEGVEVKRP-------------------EQL--DEIDGLIIPGGESTTLSRLLD 55 (184)
T ss_pred CEEEEEccCCHHH----HHHHHHHCCCEEEEECCh-------------------HHh--ccCCEEEECCCCHHHHHHHHH
Confidence 6899999987665 448888999988888552 122 579999999996332 23445
Q ss_pred ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
+..+.+.|+++.+++++|.+||.|..+|++.
T Consensus 56 ~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~ 86 (184)
T TIGR03800 56 KYGMFEPLRNFILSGLPVFGTCAGLIMLAKE 86 (184)
T ss_pred hccHHHHHHHHHHcCCcEEEECHHHHHHHhh
Confidence 5678999999999999999999999999988
No 71
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.42 E-value=1.2e-06 Score=65.50 Aligned_cols=89 Identities=30% Similarity=0.336 Sum_probs=70.5
Q ss_pred EEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccCh
Q 015523 20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCE 99 (405)
Q Consensus 20 i~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~ 99 (405)
|+++..+++...++..+.+.|++.++++.+++.... .... .....+||++++|||.........+.
T Consensus 1 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~~~lii~g~~~~~~~~~~~~ 66 (92)
T cd03128 1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLAWDE 66 (92)
T ss_pred CEEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCC-cccc-------------cCCcccCCEEEECCCCcchhhhccCH
Confidence 467888888888999999999999999999999886 3333 12234799999999953232222468
Q ss_pred HHHHHHHHHHHcCCEEEEEccch
Q 015523 100 ILKKITSKQAEEKRLYGAICAAP 122 (405)
Q Consensus 100 ~~~~~l~~~~~~~~~i~aic~g~ 122 (405)
...+++.++++++++++++|.|.
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~~g~ 89 (92)
T cd03128 67 ALLALLREAAAAGKPVLGICLGA 89 (92)
T ss_pred HHHHHHHHHHHcCCEEEEEeccc
Confidence 89999999999999999999963
No 72
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.41 E-value=1.2e-06 Score=75.15 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=61.6
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh--cc
Q 015523 18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV--RL 95 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~--~~ 95 (405)
+||+||.++|...+ -...|++.|+++.++.... +. .+||.||+|||. ... .+
T Consensus 3 ~~igVLalqG~~~E----h~~al~~lG~~v~~v~~~~-------------------~l--~~~D~LILPGG~-~t~~~~l 56 (179)
T PRK13526 3 QKVGVLAIQGGYQK----HADMFKSLGVEVKLVKFNN-------------------DF--DSIDRLVIPGGE-STTLLNL 56 (179)
T ss_pred cEEEEEECCccHHH----HHHHHHHcCCcEEEECCHH-------------------HH--hCCCEEEECCCh-HHHHHHH
Confidence 68999999997766 4567777777655553111 23 269999999994 333 45
Q ss_pred ccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
.++..+.+.|+++.+ ++|+.++|.|.. +|++
T Consensus 57 l~~~~l~~~Ik~~~~-~kpilGICaG~q-lL~~ 87 (179)
T PRK13526 57 LNKHQIFDKLYNFCS-SKPVFGTCAGSI-ILSK 87 (179)
T ss_pred hhhcCcHHHHHHHHc-CCcEEEEcHHHH-HHHc
Confidence 556679999999875 789999999766 6887
No 73
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=98.34 E-value=1.2e-06 Score=76.50 Aligned_cols=85 Identities=16% Similarity=0.041 Sum_probs=65.3
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh-hcccc
Q 015523 19 NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-VRLRD 97 (405)
Q Consensus 19 ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~-~~~~~ 97 (405)
||+|+..+|...+ ..+.|++.++++.++++.. +.+ +||+++||||.... ..+..
T Consensus 1 ~igvl~~qg~~~e----~~~~l~~~g~~~~~v~~~~-------------------~l~--~~d~liipGG~~~~~~~l~~ 55 (184)
T TIGR03800 1 KIGVLALQGAVRE----HARALEALGVEGVEVKRPE-------------------QLD--EIDGLIIPGGESTTLSRLLD 55 (184)
T ss_pred CEEEEEccCCHHH----HHHHHHHCCCEEEEECChH-------------------Hhc--cCCEEEECCCCHHHHHHHHH
Confidence 6999999987666 4588999999998886521 232 69999999995221 23344
Q ss_pred ChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 98 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 98 ~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
+..+.+.|++++++++||.++|.|.. +|++.
T Consensus 56 ~~~l~~~i~~~~~~g~pilGIC~G~q-lL~~~ 86 (184)
T TIGR03800 56 KYGMFEPLRNFILSGLPVFGTCAGLI-MLAKE 86 (184)
T ss_pred hccHHHHHHHHHHcCCcEEEECHHHH-HHHhh
Confidence 56788999999999999999999755 68876
No 74
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.34 E-value=1.9e-06 Score=76.25 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=59.4
Q ss_pred HHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccc--hHhhhcChHHHHHHHHHhhcCC
Q 015523 239 IVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG--AERLQKSRILKKLLKEQKVAGR 316 (405)
Q Consensus 239 ~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~--~~~~~~~~~l~~~l~~~~~~~k 316 (405)
-.+.|++.|+++.++++..+ +++ .++|+|++|||... +..+..+..+.+.|+++.++|+
T Consensus 16 ~~~~l~~~G~~v~~~s~~~~-----------------~~l--~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~ 76 (198)
T cd03130 16 NLELLEAAGAELVPFSPLKD-----------------EEL--PDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGG 76 (198)
T ss_pred HHHHHHHCCCEEEEECCCCC-----------------CCC--CCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCC
Confidence 45777889999998886432 223 34999999999633 3456667789999999999999
Q ss_pred EEEEEchHHHHHHHcC
Q 015523 317 IYGAVCSSPIVLHKHG 332 (405)
Q Consensus 317 ~i~aic~g~~~La~aG 332 (405)
+|.+||.|.++|++.-
T Consensus 77 pilgICgG~qlL~~~~ 92 (198)
T cd03130 77 PIYAECGGLMYLGESL 92 (198)
T ss_pred CEEEEcccHHHHHHHh
Confidence 9999999999998753
No 75
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.30 E-value=4.2e-06 Score=73.50 Aligned_cols=87 Identities=23% Similarity=0.268 Sum_probs=66.4
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch-Hhh
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-ERL 298 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~-~~~ 298 (405)
||+|+|++..|....- .+.|...++++..+++. +++ ++||++++|||.... ..+
T Consensus 1 ~m~~~i~~~~g~~~~~----~~~l~~~g~~~~~~~~~-------------------~~l--~~~dgiii~GG~~~~~~~~ 55 (189)
T PRK13525 1 MMKIGVLALQGAVREH----LAALEALGAEAVEVRRP-------------------EDL--DEIDGLILPGGESTTMGKL 55 (189)
T ss_pred CCEEEEEEcccCHHHH----HHHHHHCCCEEEEeCCh-------------------hHh--ccCCEEEECCCChHHHHHH
Confidence 4799999999765544 35578888888877431 223 579999999996322 223
Q ss_pred hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
..+..+.++++++.+++++|.+||.|..+|+.+
T Consensus 56 ~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 88 (189)
T PRK13525 56 LRDFGLLEPLREFIASGLPVFGTCAGMILLAKE 88 (189)
T ss_pred HHhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence 455677899999999999999999999999984
No 76
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.25 E-value=3.9e-06 Score=76.83 Aligned_cols=99 Identities=23% Similarity=0.247 Sum_probs=67.0
Q ss_pred cEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523 18 LNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 96 (405)
Q Consensus 18 ~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~ 96 (405)
.||+|+.++|.+ +.|+ ..+|+.+|++++.+..+.- +. ......+||+|++|||....+.+.
T Consensus 2 pkV~Vl~~pGtNce~e~---~~A~~~aG~~~~~v~~~dl--~~-------------~~~~l~~~~~lvipGGFS~gD~l~ 63 (259)
T PF13507_consen 2 PKVAVLRFPGTNCERET---AAAFENAGFEPEIVHINDL--LS-------------GESDLDDFDGLVIPGGFSYGDYLR 63 (259)
T ss_dssp -EEEEEE-TTEEEHHHH---HHHHHCTT-EEEEEECCHH--HT-------------TS--GCC-SEEEE-EE-GGGGTTS
T ss_pred CEEEEEECCCCCCHHHH---HHHHHHcCCCceEEEEEec--cc-------------ccCchhhCcEEEECCccCccccch
Confidence 489999999987 4444 6778889999999875431 00 011224799999999974444332
Q ss_pred ----------cChHHHHHHHHHHHc-CCEEEEEccchHHhhhhcCCCCCc
Q 015523 97 ----------DCEILKKITSKQAEE-KRLYGAICAAPAVTLLPWGLLRRK 135 (405)
Q Consensus 97 ----------~~~~~~~~l~~~~~~-~~~i~aic~g~~~~La~agll~g~ 135 (405)
.++.+++.|+++.++ ++++.+||+|-. +|.++|+|.+.
T Consensus 64 sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQ-iL~~~Gllp~~ 112 (259)
T PF13507_consen 64 SGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQ-ILVELGLLPGG 112 (259)
T ss_dssp TTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHH-HHCCCCCSTT-
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhH-HHHHhCcCCCc
Confidence 235678889999999 999999999655 89999999883
No 77
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=98.18 E-value=7.1e-06 Score=74.30 Aligned_cols=87 Identities=23% Similarity=0.285 Sum_probs=66.1
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch-Hhh
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-ERL 298 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~-~~~ 298 (405)
||||+||...|....- ...|++.|+++.+++.. +++ .++|.||+|||.... ..+
T Consensus 1 ~m~igVLa~qG~~~e~----~~aL~~lG~ev~~v~~~-------------------~~L--~~~DgLILPGGfs~~~~~L 55 (248)
T PLN02832 1 MMAIGVLALQGSFNEH----IAALRRLGVEAVEVRKP-------------------EQL--EGVSGLIIPGGESTTMAKL 55 (248)
T ss_pred CcEEEEEeCCCchHHH----HHHHHHCCCcEEEeCCH-------------------HHh--ccCCEEEeCCCHHHHHHHH
Confidence 5799999999875544 47777888777666442 233 568999999987432 334
Q ss_pred hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.....+.+.|+++.++|+++.++|.|..+|++.
T Consensus 56 ~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~ 88 (248)
T PLN02832 56 AERHNLFPALREFVKSGKPVWGTCAGLIFLAER 88 (248)
T ss_pred HhhcchHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence 444468889999988999999999999999875
No 78
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.15 E-value=1.1e-05 Score=71.46 Aligned_cols=87 Identities=21% Similarity=0.230 Sum_probs=66.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 300 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~ 300 (405)
|||.|+-+.+-+.. ...+.|++.|+++.+++. .+++ ++||++++|||......+..
T Consensus 1 ~~~~v~~~~~~~~~---~~~~~l~~~G~~~~~~~~-------------------~~~~--~~~d~iii~G~~~~~~~~~~ 56 (200)
T PRK13143 1 MMIVIIDYGVGNLR---SVSKALERAGAEVVITSD-------------------PEEI--LDADGIVLPGVGAFGAAMEN 56 (200)
T ss_pred CeEEEEECCCccHH---HHHHHHHHCCCeEEEECC-------------------HHHH--ccCCEEEECCCCCHHHHHHH
Confidence 57888877765554 457888889999888731 0223 57999999996322233445
Q ss_pred ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.+.+.++|+++.++++++.+||.|..+|+++
T Consensus 57 ~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~ 87 (200)
T PRK13143 57 LSPLRDVILEAARSGKPFLGICLGMQLLFES 87 (200)
T ss_pred HHHHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence 5678999999999999999999999999985
No 79
>PRK08250 glutamine amidotransferase; Provisional
Probab=98.09 E-value=3.3e-05 Score=70.21 Aligned_cols=94 Identities=18% Similarity=0.263 Sum_probs=68.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh-hh
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-LQ 299 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~-~~ 299 (405)
|||.|+....+...+.. .+.+...|+++++..+..+.+ + | .+. .+||++||.||..+... ..
T Consensus 1 m~i~vi~h~~~e~~g~~--~~~~~~~g~~~~~~~~~~g~~--------~-p----~~~--~~~d~vii~GGp~~~~~~~~ 63 (235)
T PRK08250 1 MRVHFIIHESFEAPGAY--LKWAENRGYDISYSRVYAGEA--------L-P----ENA--DGFDLLIVMGGPQSPRTTRE 63 (235)
T ss_pred CeEEEEecCCCCCchHH--HHHHHHCCCeEEEEEccCCCC--------C-C----CCc--cccCEEEECCCCCChhhccc
Confidence 57899988888877764 566688898888866554301 1 1 122 67999999999643221 11
Q ss_pred cC-----hHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 300 KS-----RILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 300 ~~-----~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.. ....++|+++...+++|.+||.|..+|+.+
T Consensus 64 ~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 100 (235)
T PRK08250 64 ECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEA 100 (235)
T ss_pred cccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence 11 467899999999999999999999999986
No 80
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.08 E-value=2.3e-05 Score=78.35 Aligned_cols=92 Identities=18% Similarity=0.203 Sum_probs=70.0
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccc--hHh
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG--AER 297 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~--~~~ 297 (405)
..||+|.-.+-|+.. +..=.+.|++.+.++..+++-.. +++ +++|+|++|||... ...
T Consensus 245 ~~~iava~d~af~f~-y~e~~~~L~~~g~~~~~~~~~~~-----------------~~l--~~~D~lilpGG~~~~~~~~ 304 (451)
T PRK01077 245 GVRIAVARDAAFNFY-YPENLELLRAAGAELVFFSPLAD-----------------EAL--PDCDGLYLGGGYPELFAAE 304 (451)
T ss_pred CceEEEEecCccccc-HHHHHHHHHHCCCEEEEeCCcCC-----------------CCC--CCCCEEEeCCCchhhHHHH
Confidence 469999998865554 11123667778899988876432 123 47899999999743 345
Q ss_pred hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
+..+..+.+.|+++.++|++|.++|.|..+|++.
T Consensus 305 l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~ 338 (451)
T PRK01077 305 LAANTSMRASIRAAAAAGKPIYAECGGLMYLGES 338 (451)
T ss_pred HhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence 6778889999999999999999999999999764
No 81
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.07 E-value=1.3e-05 Score=71.05 Aligned_cols=76 Identities=21% Similarity=0.122 Sum_probs=58.0
Q ss_pred HHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh--hhccccChHHHHHHHHHHHcCC
Q 015523 36 IVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG--SVRLRDCEILKKITSKQAEEKR 113 (405)
Q Consensus 36 ~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~--~~~~~~~~~~~~~l~~~~~~~~ 113 (405)
-.+.|++.|+++.++++..+ ++.+ ++|+||+|||.+. ...+..+..+.+.|+++.++++
T Consensus 16 ~~~~l~~~G~~v~~~s~~~~-----------------~~l~--~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~ 76 (198)
T cd03130 16 NLELLEAAGAELVPFSPLKD-----------------EELP--DADGLYLGGGYPELFAEELSANQSMRESIRAFAESGG 76 (198)
T ss_pred HHHHHHHCCCEEEEECCCCC-----------------CCCC--CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCC
Confidence 46788889999999886532 1333 4999999999533 3456666788999999999999
Q ss_pred EEEEEccchHHhhhhcCC
Q 015523 114 LYGAICAAPAVTLLPWGL 131 (405)
Q Consensus 114 ~i~aic~g~~~~La~agl 131 (405)
||.+||.|.+ +|++.-.
T Consensus 77 pilgICgG~q-lL~~~~~ 93 (198)
T cd03130 77 PIYAECGGLM-YLGESLD 93 (198)
T ss_pred CEEEEcccHH-HHHHHhh
Confidence 9999999755 6776443
No 82
>PRK07053 glutamine amidotransferase; Provisional
Probab=98.07 E-value=3e-05 Score=70.43 Aligned_cols=96 Identities=19% Similarity=0.162 Sum_probs=69.2
Q ss_pred CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh-
Q 015523 219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER- 297 (405)
Q Consensus 219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~- 297 (405)
+|++|.|+-....+ .+..+.+.|+..|+.++++.+..+ +....+. .+||++||+||..+...
T Consensus 1 ~m~~ilviqh~~~e--~~g~i~~~L~~~g~~~~v~~~~~~-------------~~~~~~~--~~~d~lii~Ggp~~~~d~ 63 (234)
T PRK07053 1 MMKTAVAIRHVAFE--DLGSFEQVLGARGYRVRYVDVGVD-------------DLETLDA--LEPDLLVVLGGPIGVYDD 63 (234)
T ss_pred CCceEEEEECCCCC--CChHHHHHHHHCCCeEEEEecCCC-------------ccCCCCc--cCCCEEEECCCCCCCCCC
Confidence 47887777554443 334578899999999998877543 1111222 57999999998644322
Q ss_pred --hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 298 --LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 298 --~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
..--..++++|+++.+.++++.+||-|..+|+.+
T Consensus 64 ~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 99 (234)
T PRK07053 64 ELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARA 99 (234)
T ss_pred CcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence 1223478899999999999999999999999987
No 83
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=98.06 E-value=1.4e-05 Score=72.45 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=64.7
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh-hhcc
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-SVRL 95 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~-~~~~ 95 (405)
+|||+||.++|....- .+.|++.++++.+++.. ++++ ++|.||+|||++. ...+
T Consensus 1 ~m~igVLa~qG~~~e~----~~aL~~lG~ev~~v~~~-------------------~~L~--~~DgLILPGGfs~~~~~L 55 (248)
T PLN02832 1 MMAIGVLALQGSFNEH----IAALRRLGVEAVEVRKP-------------------EQLE--GVSGLIIPGGESTTMAKL 55 (248)
T ss_pred CcEEEEEeCCCchHHH----HHHHHHCCCcEEEeCCH-------------------HHhc--cCCEEEeCCCHHHHHHHH
Confidence 4699999999866555 57778888877666542 1343 5899999999632 2334
Q ss_pred ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC
Q 015523 96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG 130 (405)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag 130 (405)
.....+.+.|+++.++++||.++|.| ..+|++..
T Consensus 56 ~~~~gl~~~I~~~v~~g~PvLGiC~G-mqlLa~~~ 89 (248)
T PLN02832 56 AERHNLFPALREFVKSGKPVWGTCAG-LIFLAERA 89 (248)
T ss_pred HhhcchHHHHHHHHHcCCCEEEEChh-HHHHHHHh
Confidence 44446888999999999999999996 54787753
No 84
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.05 E-value=1.8e-05 Score=69.43 Aligned_cols=86 Identities=17% Similarity=0.093 Sum_probs=62.6
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh-hcc
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-VRL 95 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~-~~~ 95 (405)
+|||+|+...|-..+- .+.|+..++++.++++. .++ .+||++++|||.... +..
T Consensus 1 ~m~~~i~~~~g~~~~~----~~~l~~~g~~~~~~~~~-------------------~~l--~~~dgiii~GG~~~~~~~~ 55 (189)
T PRK13525 1 MMKIGVLALQGAVREH----LAALEALGAEAVEVRRP-------------------EDL--DEIDGLILPGGESTTMGKL 55 (189)
T ss_pred CCEEEEEEcccCHHHH----HHHHHHCCCEEEEeCCh-------------------hHh--ccCCEEEECCCChHHHHHH
Confidence 4689999998765544 46678888888887531 123 369999999994221 223
Q ss_pred ccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
..+..+.+++++++++++||.+||.|.. +|+.
T Consensus 56 ~~~~~~~~~i~~~~~~g~PilGIC~G~Q-lL~~ 87 (189)
T PRK13525 56 LRDFGLLEPLREFIASGLPVFGTCAGMI-LLAK 87 (189)
T ss_pred HHhccHHHHHHHHHHCCCeEEEECHHHH-HHHh
Confidence 3455678999999999999999999765 5775
No 85
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.00 E-value=3e-05 Score=84.66 Aligned_cols=108 Identities=17% Similarity=0.336 Sum_probs=79.2
Q ss_pred CcCEEEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEE-eeCCCc-cCcCCCCccEEEEcCCccch
Q 015523 219 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKI-IADKSI-SDAAESVYDLIILPGGVAGA 295 (405)
Q Consensus 219 ~~~~V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v-~~~~~l-~~~~~~~~D~livpgG~~~~ 295 (405)
..+||+|+.++|. ++.|...+++ ++|+++..+..+.- ... .+ ..-..+ .++ .+||+|++|||+...
T Consensus 976 ~kpkvaIl~~pGtNce~d~a~Af~---~aG~~~~~v~~~dl--~~~----~i~~s~~~~~~~l--~~~~~l~~pGGFSyG 1044 (1239)
T TIGR01857 976 EKPRVVIPVFPGTNSEYDSAKAFE---KEGAEVNLVIFRNL--NEE----ALVESVETMVDEI--DKSQILMLPGGFSAG 1044 (1239)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH---HcCCceEEEEEecC--ccc----ccccchhhhhccc--ccCcEEEEcCccCcc
Confidence 4689999999997 7888665554 59998888775541 000 00 000111 223 789999999998533
Q ss_pred Hh----------hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCC
Q 015523 296 ER----------LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAK 337 (405)
Q Consensus 296 ~~----------~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~ 337 (405)
+. +..++.+.+-+++|+++++++.+||+|-.+|.+.|||.+.
T Consensus 1045 D~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~ 1096 (1239)
T TIGR01857 1045 DEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYG 1096 (1239)
T ss_pred cccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCc
Confidence 32 3456889999999999999999999999999999999853
No 86
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=97.96 E-value=3.1e-05 Score=67.68 Aligned_cols=84 Identities=26% Similarity=0.316 Sum_probs=64.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH-hhhcC
Q 015523 223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-RLQKS 301 (405)
Q Consensus 223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~-~~~~~ 301 (405)
|+|++.+|...... +.|++.++++..+++.. ++ .++|.+++|||..... ....+
T Consensus 1 igvl~~qg~~~e~~----~~l~~~g~~v~~v~~~~-------------------~l--~~~dgiii~Gg~~~~~~~~~~~ 55 (183)
T cd01749 1 IGVLALQGDFREHI----RALERLGVEVIEVRTPE-------------------DL--EGIDGLIIPGGESTTIGKLLRR 55 (183)
T ss_pred CEEEEecCCcHHHH----HHHHHCCCeEEEECCHH-------------------Hh--ccCCEEEECCchHHHHHHHHHh
Confidence 57888888766444 88899999998886632 12 5689999999963222 23345
Q ss_pred hHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 302 RILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 302 ~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
..+.++|+++.++++++.++|.|..+|+.+
T Consensus 56 ~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~ 85 (183)
T cd01749 56 TGLLDPLREFIRAGKPVFGTCAGLILLAKE 85 (183)
T ss_pred CCHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 567899999999999999999999999875
No 87
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=97.95 E-value=4.2e-05 Score=67.46 Aligned_cols=86 Identities=26% Similarity=0.233 Sum_probs=62.3
Q ss_pred EEEEeCCC-CcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc-
Q 015523 223 VLIPIANG-SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK- 300 (405)
Q Consensus 223 V~il~~~g-~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~- 300 (405)
|+|+.|+. -+..+ +...+...|++++++++..+ +.++|+|++|||......+..
T Consensus 1 ~~~~~y~~~gN~~~---l~~~~~~~G~~~~~~~~~~~---------------------~~~~d~lilpGg~~~~~~~~~~ 56 (194)
T cd01750 1 IAVIRYPDISNFTD---LDPLAREPGVDVRYVEVPEG---------------------LGDADLIILPGSKDTIQDLAWL 56 (194)
T ss_pred CEeecCCCccCHHH---HHHHHhcCCceEEEEeCCCC---------------------CCCCCEEEECCCcchHHHHHHH
Confidence 35666653 34433 45666678889988876541 256899999999732333322
Q ss_pred -ChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC
Q 015523 301 -SRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 332 (405)
Q Consensus 301 -~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG 332 (405)
+..+.+.|+++.++|++|.+||.|..+|++.-
T Consensus 57 ~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 57 RKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI 89 (194)
T ss_pred HHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence 45688999999999999999999999998763
No 88
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=97.90 E-value=0.00015 Score=80.30 Aligned_cols=102 Identities=13% Similarity=0.130 Sum_probs=77.6
Q ss_pred CCcCEEEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523 218 DRMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 296 (405)
Q Consensus 218 ~~~~~V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~ 296 (405)
.+.+||+|+.++|. ++.|+.. .|..+||++..+..+.= . . .+.+..+|++|++|||+...+
T Consensus 1053 ~~~p~vail~~pG~N~~~e~~~---Af~~aGf~~~~v~~~dl--~--------~-----~~~~l~~~~~lv~~GGFSygD 1114 (1310)
T TIGR01735 1053 GVRPKVAILREQGVNGDREMAA---AFDRAGFEAWDVHMSDL--L--------A-----GRVHLDEFRGLAACGGFSYGD 1114 (1310)
T ss_pred CCCceEEEEECCCCCCHHHHHH---HHHHhCCCcEEEEEecc--c--------c-----CCcchhheeEEEEcCCCCCcc
Confidence 34689999999998 7778665 45578988887765531 0 0 111226799999999974221
Q ss_pred ----------hhhcChHHHHHHHHHh-hcCCEEEEEchHHHHHH-HcCCCCCC
Q 015523 297 ----------RLQKSRILKKLLKEQK-VAGRIYGAVCSSPIVLH-KHGLLKAK 337 (405)
Q Consensus 297 ----------~~~~~~~l~~~l~~~~-~~~k~i~aic~g~~~La-~aGlL~g~ 337 (405)
.+..++.+.+.+++|+ ++++++.+||+|-.+|. ..||+.|.
T Consensus 1115 ~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~ 1167 (1310)
T TIGR01735 1115 VLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGT 1167 (1310)
T ss_pred chhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCC
Confidence 2456789999999999 89999999999999999 99999874
No 89
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.90 E-value=0.00011 Score=81.08 Aligned_cols=101 Identities=16% Similarity=0.191 Sum_probs=77.3
Q ss_pred CcCEEEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH-
Q 015523 219 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE- 296 (405)
Q Consensus 219 ~~~~V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~- 296 (405)
..+||+|+.++|. ++.|+..+ |..+||.+..+..+. ...+ .....+|++|++|||+...+
T Consensus 1036 ~~pkVaVl~~pGtN~~~e~~~A---f~~aGf~~~~V~~~d--l~~~-------------~~~L~~~~glv~pGGFSyGD~ 1097 (1307)
T PLN03206 1036 SKPKVAIIREEGSNGDREMAAA---FYAAGFEPWDVTMSD--LLNG-------------RISLDDFRGIVFVGGFSYADV 1097 (1307)
T ss_pred CCCeEEEEECCCCCCHHHHHHH---HHHcCCceEEEEeee--cccc-------------cccccceeEEEEcCcCCCccc
Confidence 4689999999997 77786654 457999887776553 1111 11126799999999984222
Q ss_pred ---------hhhcChHHHHHHHHHh-hcCCEEEEEchHHHHHHHcCCCCCC
Q 015523 297 ---------RLQKSRILKKLLKEQK-VAGRIYGAVCSSPIVLHKHGLLKAK 337 (405)
Q Consensus 297 ---------~~~~~~~l~~~l~~~~-~~~k~i~aic~g~~~La~aGlL~g~ 337 (405)
.+..++.+.+.+++|+ +.++++.+||+|-.+|.+.|||.|-
T Consensus 1098 l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~ 1148 (1307)
T PLN03206 1098 LDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGP 1148 (1307)
T ss_pred cchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCC
Confidence 3456789999999999 6699999999999999999999875
No 90
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.88 E-value=3.8e-05 Score=68.13 Aligned_cols=87 Identities=20% Similarity=0.173 Sum_probs=63.1
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcccc
Q 015523 18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD 97 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~ 97 (405)
|||.|+=+.+-+. ..+.+.|++.|+++.+++.. .++ .+||++++|||......+..
T Consensus 1 ~~~~v~~~~~~~~---~~~~~~l~~~G~~~~~~~~~-------------------~~~--~~~d~iii~G~~~~~~~~~~ 56 (200)
T PRK13143 1 MMIVIIDYGVGNL---RSVSKALERAGAEVVITSDP-------------------EEI--LDADGIVLPGVGAFGAAMEN 56 (200)
T ss_pred CeEEEEECCCccH---HHHHHHHHHCCCeEEEECCH-------------------HHH--ccCCEEEECCCCCHHHHHHH
Confidence 5788887664444 55688999999998887410 122 26999999996322233344
Q ss_pred ChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 98 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 98 ~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
.+.+.++++++.++++|+.++|.|.. +|+++
T Consensus 57 ~~~~~~~i~~~~~~~~PilgIC~G~q-~l~~~ 87 (200)
T PRK13143 57 LSPLRDVILEAARSGKPFLGICLGMQ-LLFES 87 (200)
T ss_pred HHHHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence 56788999999999999999999766 68875
No 91
>PRK08250 glutamine amidotransferase; Provisional
Probab=97.87 E-value=9.2e-05 Score=67.32 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=65.0
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc-cc
Q 015523 18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR-LR 96 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~-~~ 96 (405)
|||.|+....|...+. +.+++++.|+++++..+..+.+ + | .+ ..+||++||.||..+... ..
T Consensus 1 m~i~vi~h~~~e~~g~--~~~~~~~~g~~~~~~~~~~g~~--------~-p----~~--~~~~d~vii~GGp~~~~~~~~ 63 (235)
T PRK08250 1 MRVHFIIHESFEAPGA--YLKWAENRGYDISYSRVYAGEA--------L-P----EN--ADGFDLLIVMGGPQSPRTTRE 63 (235)
T ss_pred CeEEEEecCCCCCchH--HHHHHHHCCCeEEEEEccCCCC--------C-C----CC--ccccCEEEECCCCCChhhccc
Confidence 5788888888877765 4667788898888866544311 1 1 02 247999999999422221 11
Q ss_pred cC-----hHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 97 DC-----EILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 97 ~~-----~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
+. ....+||++++++++||.+||.|.. +|+.+
T Consensus 64 ~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a 100 (235)
T PRK08250 64 ECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQ-LIGEA 100 (235)
T ss_pred cccccchHHHHHHHHHHHHcCCCEEEEChhHH-HHHHH
Confidence 12 3568999999999999999999877 57653
No 92
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=97.86 E-value=2.9e-05 Score=65.68 Aligned_cols=85 Identities=21% Similarity=0.162 Sum_probs=61.2
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHhcC-CEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh-hhcc
Q 015523 18 LNVLVPVGFGTEEMEAVIIVDVLRRAG-AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-SVRL 95 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~~~~~~l~~~~-~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~-~~~~ 95 (405)
||||||.++|...+.+ +.+++++ .++..+ . ...+++ ..|+||||||.+. ...+
T Consensus 1 m~IGVLalQG~v~EH~----~~l~~~~~~e~~~V----------------k---~~~dL~--~~d~LIiPGGESTTi~rL 55 (194)
T COG0311 1 MKIGVLALQGAVEEHL----EALEKAGGAEVVEV----------------K---RPEDLE--GVDGLIIPGGESTTIGRL 55 (194)
T ss_pred CeEEEEEecccHHHHH----HHHHhhcCCceEEE----------------c---CHHHhc--cCcEEEecCccHHHHHHH
Confidence 5899999999887774 5555554 222222 1 112443 5899999999633 3556
Q ss_pred ccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
.+...+.+-|+++..+|+|+.+.|.| ..+||+
T Consensus 56 ~~~~gl~e~l~~~~~~G~Pv~GTCAG-lIlLak 87 (194)
T COG0311 56 LKRYGLLEPLREFIADGLPVFGTCAG-LILLAK 87 (194)
T ss_pred HHHcCcHHHHHHHHHcCCceEEechh-hhhhhh
Confidence 66778889999999999999999995 656775
No 93
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=97.86 E-value=8e-05 Score=65.39 Aligned_cols=92 Identities=24% Similarity=0.369 Sum_probs=65.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHHhCC---CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch--H
Q 015523 222 RVLIPIANGSEEIEIVTIVDILRRAK---VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA--E 296 (405)
Q Consensus 222 ~V~il~~~g~~~~e~~~~~~~l~~~~---~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~--~ 296 (405)
||+|+..+.... .....+.|+..+ ++++++-...+ +. ..+. .+||++++|||.... .
T Consensus 1 ~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~-------------~~-~~~~--~~~dgvil~Gg~~~~~~~ 62 (188)
T cd01741 1 RILILQHDTPEG--PGLFEDLLREAGAETIEIDVVDVYAG-------------EL-LPDL--DDYDGLVILGGPMSVDED 62 (188)
T ss_pred CEEEEECCCCCC--cchHHHHHHhcCCCCceEEEEecCCC-------------CC-CCCc--ccCCEEEECCCCccCCcc
Confidence 466776665543 556677777777 67777655543 00 2333 689999999996443 1
Q ss_pred hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 297 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 297 ~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.....+.+.++|+++..+++++.+||.|..+|+.+
T Consensus 63 ~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~ 97 (188)
T cd01741 63 DYPWLKKLKELIRQALAAGKPVLGICLGHQLLARA 97 (188)
T ss_pred CChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence 12223578999999999999999999999999875
No 94
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=97.85 E-value=4.5e-05 Score=64.51 Aligned_cols=85 Identities=27% Similarity=0.286 Sum_probs=62.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCC-CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccc-hHhh
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAK-VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG-AERL 298 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~-~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~-~~~~ 298 (405)
|+|+|+.++|-....+. .+++++ .++..+ + ..+++ .+.|+||+|||..- +..+
T Consensus 1 m~IGVLalQG~v~EH~~----~l~~~~~~e~~~V----------------k---~~~dL--~~~d~LIiPGGESTTi~rL 55 (194)
T COG0311 1 MKIGVLALQGAVEEHLE----ALEKAGGAEVVEV----------------K---RPEDL--EGVDGLIIPGGESTTIGRL 55 (194)
T ss_pred CeEEEEEecccHHHHHH----HHHhhcCCceEEE----------------c---CHHHh--ccCcEEEecCccHHHHHHH
Confidence 68999999987666644 444443 222211 1 23444 66899999999632 2456
Q ss_pred hcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523 299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK 330 (405)
Q Consensus 299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~ 330 (405)
.+...+.+-|+++..+|+|+.+.|+|..+||+
T Consensus 56 ~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLak 87 (194)
T COG0311 56 LKRYGLLEPLREFIADGLPVFGTCAGLILLAK 87 (194)
T ss_pred HHHcCcHHHHHHHHHcCCceEEechhhhhhhh
Confidence 67778999999999999999999999999997
No 95
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.85 E-value=8.9e-05 Score=74.14 Aligned_cols=90 Identities=19% Similarity=0.154 Sum_probs=66.6
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh--hhcc
Q 015523 18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG--SVRL 95 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~--~~~~ 95 (405)
.||+|.-.+=|+.. +..-++.|+..+.++..+++-.. .+++ +||+|++|||++. ...+
T Consensus 246 ~~iava~d~af~f~-y~e~~~~L~~~g~~~~~~~~~~~-----------------~~l~--~~D~lilpGG~~~~~~~~l 305 (451)
T PRK01077 246 VRIAVARDAAFNFY-YPENLELLRAAGAELVFFSPLAD-----------------EALP--DCDGLYLGGGYPELFAAEL 305 (451)
T ss_pred ceEEEEecCccccc-HHHHHHHHHHCCCEEEEeCCcCC-----------------CCCC--CCCEEEeCCCchhhHHHHH
Confidence 58999987733332 22235777888999998876432 1233 6999999999754 3556
Q ss_pred ccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
..+..+.+.|+++.+++++|.++|.|.+ +|++
T Consensus 306 ~~~~~~~~~i~~~~~~g~~i~aiCgG~~-~L~~ 337 (451)
T PRK01077 306 AANTSMRASIRAAAAAGKPIYAECGGLM-YLGE 337 (451)
T ss_pred hhCchhHHHHHHHHHcCCCEEEEcHHHH-HHHh
Confidence 6778899999999999999999999754 5765
No 96
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=97.80 E-value=0.0001 Score=80.52 Aligned_cols=107 Identities=19% Similarity=0.260 Sum_probs=75.4
Q ss_pred CCcEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCc--eeEeccCcEEecCccc-CCCCCCcccEEEEcCCchh
Q 015523 16 FALNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQL--EVEASSGTRLVADTSI-SNCSHQVFDLIALPGGMPG 91 (405)
Q Consensus 16 ~~~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~--~v~~~~g~~v~~~~~~-~~~~~~~~d~liipgg~~~ 91 (405)
..+||+|+.++|.+ +.|. ...|.++|+++..+..+.-. .+.. ++ ..+ .++ .+|++|++|||+..
T Consensus 976 ~kpkvaIl~~pGtNce~d~---a~Af~~aG~~~~~v~~~dl~~~~i~~--s~-----~~~~~~l--~~~~~l~~pGGFSy 1043 (1239)
T TIGR01857 976 EKPRVVIPVFPGTNSEYDS---AKAFEKEGAEVNLVIFRNLNEEALVE--SV-----ETMVDEI--DKSQILMLPGGFSA 1043 (1239)
T ss_pred CCCeEEEEECCCCCCHHHH---HHHHHHcCCceEEEEEecCccccccc--ch-----hhhhccc--ccCcEEEEcCccCc
Confidence 45799999999988 5555 44555699998888754410 1110 00 011 223 37999999999743
Q ss_pred hhcc----------ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCc
Q 015523 92 SVRL----------RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRK 135 (405)
Q Consensus 92 ~~~~----------~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~ 135 (405)
.+.+ ..++.+++-+++++++++++.+||+|-. +|.+.|||.+.
T Consensus 1044 GD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ-~L~~lGLlP~~ 1096 (1239)
T TIGR01857 1044 GDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQ-ALVKSGLLPYG 1096 (1239)
T ss_pred ccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHH-HHHHcCCCcCc
Confidence 3333 3357888999999999999999999766 79999999753
No 97
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.76 E-value=0.00022 Score=79.29 Aligned_cols=100 Identities=13% Similarity=0.211 Sum_probs=75.7
Q ss_pred CcCEEEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH-
Q 015523 219 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE- 296 (405)
Q Consensus 219 ~~~~V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~- 296 (405)
..+||+|+.++|. ++.|+..+ |..+||++..+..+. ..... ..+ .+|+++++|||+...+
T Consensus 1034 ~~pkv~il~~pG~N~~~e~~~A---f~~aG~~~~~v~~~d--l~~~~-----------~~l--~~~~~l~~~GGFS~gD~ 1095 (1290)
T PRK05297 1034 ARPKVAILREQGVNSHVEMAAA---FDRAGFDAIDVHMSD--LLAGR-----------VTL--EDFKGLVACGGFSYGDV 1095 (1290)
T ss_pred CCCeEEEEECCCCCCHHHHHHH---HHHcCCCeEEEEeec--CcCCC-----------CCh--hhCcEEEECCccCCccc
Confidence 4589999999997 77776554 557999988777653 11110 123 7899999999974222
Q ss_pred ---------hhhcChHHHHHHHHHh-hcCCEEEEEchHHHHHHHcC-CCCC
Q 015523 297 ---------RLQKSRILKKLLKEQK-VAGRIYGAVCSSPIVLHKHG-LLKA 336 (405)
Q Consensus 297 ---------~~~~~~~l~~~l~~~~-~~~k~i~aic~g~~~La~aG-lL~g 336 (405)
.+..++.+.+.+++|+ ++++++.+||+|-.+|.+.| |+.+
T Consensus 1096 lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~ 1146 (1290)
T PRK05297 1096 LGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPG 1146 (1290)
T ss_pred chHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHhCCccCC
Confidence 2345789999999977 88999999999999999998 7765
No 98
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=97.74 E-value=0.00011 Score=64.74 Aligned_cols=87 Identities=20% Similarity=0.071 Sum_probs=60.2
Q ss_pred EEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcccc--
Q 015523 20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD-- 97 (405)
Q Consensus 20 i~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~-- 97 (405)
|+++.|++. .-+..+...++..++++.++++..+ . .++|+|++|||+.....+..
T Consensus 1 ~~~~~y~~~--gN~~~l~~~~~~~G~~~~~~~~~~~-------------------~--~~~d~lilpGg~~~~~~~~~~~ 57 (194)
T cd01750 1 IAVIRYPDI--SNFTDLDPLAREPGVDVRYVEVPEG-------------------L--GDADLIILPGSKDTIQDLAWLR 57 (194)
T ss_pred CEeecCCCc--cCHHHHHHHHhcCCceEEEEeCCCC-------------------C--CCCCEEEECCCcchHHHHHHHH
Confidence 356666542 2234456677778899998876542 2 36899999999522222222
Q ss_pred ChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC
Q 015523 98 CEILKKITSKQAEEKRLYGAICAAPAVTLLPWG 130 (405)
Q Consensus 98 ~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag 130 (405)
+..+.+.|+++.++++||.++|.|.. +|++.-
T Consensus 58 ~~~~~~~i~~~~~~g~pvlgiC~G~q-lL~~~~ 89 (194)
T cd01750 58 KRGLAEAIKNYARAGGPVLGICGGYQ-MLGKYI 89 (194)
T ss_pred HcCHHHHHHHHHHCCCcEEEECHHHH-Hhhhhc
Confidence 45688999999999999999999765 677654
No 99
>PRK07053 glutamine amidotransferase; Provisional
Probab=97.74 E-value=0.00017 Score=65.45 Aligned_cols=95 Identities=14% Similarity=0.035 Sum_probs=65.2
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc--
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR-- 94 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~-- 94 (405)
||+|.|+- +.....+..+.+.|++.+++++++.+..+ . .. ..+. .+||++||+||..+...
T Consensus 2 m~~ilviq--h~~~e~~g~i~~~L~~~g~~~~v~~~~~~-~--------~~----~~~~--~~~d~lii~Ggp~~~~d~~ 64 (234)
T PRK07053 2 MKTAVAIR--HVAFEDLGSFEQVLGARGYRVRYVDVGVD-D--------LE----TLDA--LEPDLLVVLGGPIGVYDDE 64 (234)
T ss_pred CceEEEEE--CCCCCCChHHHHHHHHCCCeEEEEecCCC-c--------cC----CCCc--cCCCEEEECCCCCCCCCCC
Confidence 56665554 44555666689999999999998876543 1 10 1122 36999999998422211
Q ss_pred -cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 95 -LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 95 -~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
..-...+.++|+++.+.++|+.+||.|.. +|+.+
T Consensus 65 ~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a 99 (234)
T PRK07053 65 LYPFLAPEIALLRQRLAAGLPTLGICLGAQ-LIARA 99 (234)
T ss_pred cCCcHHHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence 11224678999999999999999999876 57754
No 100
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=97.73 E-value=8.9e-05 Score=64.77 Aligned_cols=84 Identities=18% Similarity=0.104 Sum_probs=62.6
Q ss_pred EEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh-hccccC
Q 015523 20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-VRLRDC 98 (405)
Q Consensus 20 i~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~-~~~~~~ 98 (405)
|+||+.+|...... +.|++.++++..+.+.. +. .++|.+++|||.... .....+
T Consensus 1 igvl~~qg~~~e~~----~~l~~~g~~v~~v~~~~-------------------~l--~~~dgiii~Gg~~~~~~~~~~~ 55 (183)
T cd01749 1 IGVLALQGDFREHI----RALERLGVEVIEVRTPE-------------------DL--EGIDGLIIPGGESTTIGKLLRR 55 (183)
T ss_pred CEEEEecCCcHHHH----HHHHHCCCeEEEECCHH-------------------Hh--ccCCEEEECCchHHHHHHHHHh
Confidence 68888888776554 88999999999887632 12 369999999994221 222234
Q ss_pred hHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 99 EILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 99 ~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
..+.++|+++.++++|+.++|.|.. +|++.
T Consensus 56 ~~~~~~i~~~~~~g~PvlGiC~G~q-lL~~~ 85 (183)
T cd01749 56 TGLLDPLREFIRAGKPVFGTCAGLI-LLAKE 85 (183)
T ss_pred CCHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence 5678999999999999999999655 67753
No 101
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=97.73 E-value=0.00014 Score=64.83 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=62.0
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCcc-c--hH
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVA-G--AE 296 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~-~--~~ 296 (405)
|++|+|+-|..-+..+ ....|++.|+++.++... +++ .++|.||+||+-. . +.
T Consensus 1 ~~~v~iid~~~GN~~s---l~~al~~~g~~v~vv~~~-------------------~~l--~~~d~iIlPG~g~~~~~~~ 56 (210)
T CHL00188 1 MMKIGIIDYSMGNLHS---VSRAIQQAGQQPCIINSE-------------------SEL--AQVHALVLPGVGSFDLAMK 56 (210)
T ss_pred CcEEEEEEcCCccHHH---HHHHHHHcCCcEEEEcCH-------------------HHh--hhCCEEEECCCCchHHHHH
Confidence 5789999998656555 466677788888877421 122 4589999999432 1 12
Q ss_pred hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 297 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 297 ~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.+. ...+.+.|+++.++++++.+||.|..+|++.
T Consensus 57 ~l~-~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~ 90 (210)
T CHL00188 57 KLE-KKGLITPIKKWIAEGNPFIGICLGLHLLFET 90 (210)
T ss_pred HHH-HCCHHHHHHHHHHcCCCEEEECHHHHHHhhc
Confidence 222 2346677888888999999999999999975
No 102
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.68 E-value=7.1e-05 Score=63.73 Aligned_cols=53 Identities=30% Similarity=0.306 Sum_probs=45.5
Q ss_pred CCCCccEEEEcCCccchH--hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 279 AESVYDLIILPGGVAGAE--RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 279 ~~~~~D~livpgG~~~~~--~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.++++|+|++|||+.... .+.++..+.+.|+++.++|++|.++|.|-.+|.+.
T Consensus 4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~ 58 (158)
T PF07685_consen 4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGES 58 (158)
T ss_pred CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHH
Confidence 457899999999985433 25567889999999999999999999999999885
No 103
>PRK06490 glutamine amidotransferase; Provisional
Probab=97.65 E-value=0.00037 Score=63.46 Aligned_cols=96 Identities=13% Similarity=0.096 Sum_probs=69.2
Q ss_pred CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523 219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 298 (405)
Q Consensus 219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~ 298 (405)
.++||.||.-.+++... .+.+.|+..|++++++.+..+ +...+++ .+||.++|.||..+....
T Consensus 6 ~~~~vlvi~h~~~~~~g--~l~~~l~~~g~~~~v~~~~~~-------------~~~p~~l--~~~dgvii~Ggp~~~~d~ 68 (239)
T PRK06490 6 DKRPVLIVLHQERSTPG--RVGQLLQERGYPLDIRRPRLG-------------DPLPDTL--EDHAGAVIFGGPMSANDP 68 (239)
T ss_pred CCceEEEEecCCCCCCh--HHHHHHHHCCCceEEEeccCC-------------CCCCCcc--cccCEEEEECCCCCCCCC
Confidence 46899988766554444 367888899999998876543 0011233 679999999986443221
Q ss_pred -hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 299 -QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 299 -~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.-...+++||+++...++++.+||-|..+|+.+
T Consensus 69 ~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~a 102 (239)
T PRK06490 69 DDFIRREIDWISVPLKENKPFLGICLGAQMLARH 102 (239)
T ss_pred chHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence 112457899999999999999999999999987
No 104
>PHA03366 FGAM-synthase; Provisional
Probab=97.61 E-value=0.00052 Score=76.29 Aligned_cols=98 Identities=11% Similarity=0.090 Sum_probs=75.9
Q ss_pred CcCEEEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH-
Q 015523 219 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE- 296 (405)
Q Consensus 219 ~~~~V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~- 296 (405)
..+||+|+.++|. .+.|+.. .|.++||++..+..+.= .. .+ . .++|+.|++|||+...+
T Consensus 1027 ~~prVaIl~~pG~N~~~e~~~---Af~~aGf~~~~v~~~dL--~~--------~~-~-----l~~f~glv~~GGFS~gD~ 1087 (1304)
T PHA03366 1027 KRHRVAVLLLPGCPGPHALLA---AFTNAGFDPYPVSIEEL--KD--------GT-F-----LDEFSGLVIGGSSGAEDS 1087 (1304)
T ss_pred CCCeEEEEECCCCCCHHHHHH---HHHHcCCceEEEEeecC--CC--------CC-c-----cccceEEEEcCCCCCccc
Confidence 4689999999998 6777554 45569999888876541 00 01 1 26789999999985322
Q ss_pred ---------hhhcChHHHHHHHHHh-hcCCEEEEEch-HHHHHHHcCCCC
Q 015523 297 ---------RLQKSRILKKLLKEQK-VAGRIYGAVCS-SPIVLHKHGLLK 335 (405)
Q Consensus 297 ---------~~~~~~~l~~~l~~~~-~~~k~i~aic~-g~~~La~aGlL~ 335 (405)
.+..++.+.+.+++|+ +.++++.+||+ |-.+|.+.|++.
T Consensus 1088 l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~ 1137 (1304)
T PHA03366 1088 YTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAVG 1137 (1304)
T ss_pred ccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCcc
Confidence 2457889999999999 67999999999 999999999994
No 105
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.59 E-value=0.00049 Score=61.44 Aligned_cols=91 Identities=22% Similarity=0.236 Sum_probs=58.3
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh--
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-- 297 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~-- 297 (405)
||||+|+-|..-+..++ ...|++.|+++++.-.+ ..+++ .++|.||+||+......
T Consensus 1 ~~~~~iid~g~gn~~s~---~~al~~~g~~~~v~~~~-----------------~~~~l--~~~d~lIlpG~~~~~~~~~ 58 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSA---AKALERAGAGADVVVTA-----------------DPDAV--AAADRVVLPGVGAFADCMR 58 (209)
T ss_pred CCeEEEEECCCChHHHH---HHHHHHcCCCccEEEEC-----------------CHHHh--cCCCEEEECCCCcHHHHHH
Confidence 57999998887666665 46666777743222111 11333 67999999997422221
Q ss_pred -hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC
Q 015523 298 -LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 332 (405)
Q Consensus 298 -~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG 332 (405)
+........+++.....++++.+||.|..+|+.++
T Consensus 59 ~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~ 94 (209)
T PRK13146 59 GLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERG 94 (209)
T ss_pred HHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhcc
Confidence 22222233445545578999999999999999983
No 106
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.58 E-value=0.00024 Score=63.27 Aligned_cols=85 Identities=21% Similarity=0.244 Sum_probs=59.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh--hc
Q 015523 223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL--QK 300 (405)
Q Consensus 223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~--~~ 300 (405)
|+|+-+.+-+. ..+.+.|++.|+.++++.. .+++ .+||.+|+|||....... ..
T Consensus 2 i~~~d~~~~~~---~~i~~~l~~~G~~v~~~~~-------------------~~~l--~~~d~iiipG~~~~~~~~~~~~ 57 (205)
T PRK13141 2 IAIIDYGMGNL---RSVEKALERLGAEAVITSD-------------------PEEI--LAADGVILPGVGAFPDAMANLR 57 (205)
T ss_pred EEEEEcCCchH---HHHHHHHHHCCCeEEEECC-------------------HHHh--ccCCEEEECCCCchHHHHHHHH
Confidence 44554543333 5578889999988888531 1233 579999999964212221 12
Q ss_pred ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
...+.++|+++..+++++.+||.|..+|+..
T Consensus 58 ~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~ 88 (205)
T PRK13141 58 ERGLDEVIKEAVASGKPLLGICLGMQLLFES 88 (205)
T ss_pred HcChHHHHHHHHHCCCcEEEECHHHHHhhhc
Confidence 2357899999999999999999999999986
No 107
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.58 E-value=0.00042 Score=69.25 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=69.3
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch--Hh
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA--ER 297 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~--~~ 297 (405)
..||+|+-.+-|+..= ..=++.|++.|+++..+++-.+ +++ +++|+|++|||.... ..
T Consensus 244 ~~~Iava~d~afnFy~-~~~~~~L~~~g~~~~~~~~~~d-----------------~~l--~~~d~l~ipGG~~~~~~~~ 303 (449)
T TIGR00379 244 YVRIAVAQDQAFNFYY-QDNLDALTHNAAELVPFSPLED-----------------TEL--PDVDAVYIGGGFPELFAEE 303 (449)
T ss_pred CcEEEEEechhhceeH-HHHHHHHHHCCCEEEEECCccC-----------------CCC--CCCCEEEeCCcHHHHHHHH
Confidence 3689999887666521 2234566678999998887542 223 368999999998422 23
Q ss_pred hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
+..+..+.+.|+++.++|++|.++|.|..+|++.
T Consensus 304 l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~ 337 (449)
T TIGR00379 304 LSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQS 337 (449)
T ss_pred HHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence 5567789999999999999999999999999874
No 108
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=97.58 E-value=0.00035 Score=61.33 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=62.5
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhcC---CEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh--h
Q 015523 19 NVLVPVGFGTEEMEAVIIVDVLRRAG---AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS--V 93 (405)
Q Consensus 19 ki~ill~~g~~~~e~~~~~~~l~~~~---~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~--~ 93 (405)
||+||..+.... .....++|++.+ ++++.+-...+. . ..+. .+||++|+|||.... .
T Consensus 1 ~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~~-~-------------~~~~--~~~dgvil~Gg~~~~~~~ 62 (188)
T cd01741 1 RILILQHDTPEG--PGLFEDLLREAGAETIEIDVVDVYAGE-L-------------LPDL--DDYDGLVILGGPMSVDED 62 (188)
T ss_pred CEEEEECCCCCC--cchHHHHHHhcCCCCceEEEEecCCCC-C-------------CCCc--ccCCEEEECCCCccCCcc
Confidence 477777665544 566778888887 677776655431 0 1223 379999999995322 1
Q ss_pred ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 94 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
.....+.+.++|+.+.++++++.++|.|.. +|+.+
T Consensus 63 ~~~~~~~~~~~i~~~~~~~~pilgiC~G~q-~l~~~ 97 (188)
T cd01741 63 DYPWLKKLKELIRQALAAGKPVLGICLGHQ-LLARA 97 (188)
T ss_pred CChHHHHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence 111225688999999999999999999765 56653
No 109
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=97.57 E-value=0.00062 Score=75.33 Aligned_cols=99 Identities=12% Similarity=0.087 Sum_probs=75.8
Q ss_pred CcCEEEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH-
Q 015523 219 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE- 296 (405)
Q Consensus 219 ~~~~V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~- 296 (405)
..+||+|+.++|. ++.|+.. .|.++||++..+..+.= ... + . ..+|++|++|||....+
T Consensus 928 ~~p~VaIl~~pG~N~~~e~~~---Af~~aGf~~~~v~~~dl--~~~--------~-~-----l~~f~glv~~Ggfsy~D~ 988 (1202)
T TIGR01739 928 PRHQVAVLLLPGQSVPHGLLA---ALTNAGFDPRIVSITEL--KKT--------D-F-----LDTFSGLIIGGASGTLDS 988 (1202)
T ss_pred CCCeEEEEeCCCCCCHHHHHH---HHHHcCCceEEEEeccC--CCC--------C-c-----hhheEEEEEcCcCCCCcc
Confidence 4689999999997 6777554 45569999888876651 110 0 1 14789999999875222
Q ss_pred ---------hhhcChHHHHHHHHHh-hcCCEEEEEch-HHHHHHHcCCCCC
Q 015523 297 ---------RLQKSRILKKLLKEQK-VAGRIYGAVCS-SPIVLHKHGLLKA 336 (405)
Q Consensus 297 ---------~~~~~~~l~~~l~~~~-~~~k~i~aic~-g~~~La~aGlL~g 336 (405)
.+..++.+.+.+++|+ +.++++.+||+ |-.+|.+.|++..
T Consensus 989 lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~ 1039 (1202)
T TIGR01739 989 EVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLALNIVGY 1039 (1202)
T ss_pred chHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHcCCCcC
Confidence 2456889999999999 66999999999 9999999999853
No 110
>PRK05665 amidotransferase; Provisional
Probab=97.53 E-value=0.0011 Score=60.50 Aligned_cols=51 Identities=20% Similarity=0.143 Sum_probs=41.2
Q ss_pred CCccEEEEcCCccchHh-hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 281 SVYDLIILPGGVAGAER-LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 281 ~~~D~livpgG~~~~~~-~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.+||++||.||..+... ..--..+.+||+++..+++++.+||-|..+||.+
T Consensus 56 ~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~A 107 (240)
T PRK05665 56 EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALL 107 (240)
T ss_pred ccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHH
Confidence 57999999999654322 1122578899999999999999999999999876
No 111
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=97.52 E-value=0.00043 Score=60.15 Aligned_cols=75 Identities=15% Similarity=0.071 Sum_probs=56.7
Q ss_pred HHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCE
Q 015523 238 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI 317 (405)
Q Consensus 238 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~ 317 (405)
...+.|++.|+.+.++..+.. .++.+..+||+|+++||..... ......++++++.++++|
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgiil~GG~~~~~---~~~~~~~~~~~~~~~~~P 71 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNTD----------------AEEILKLDPDGIFLSNGPGDPA---LLDEAIKTVRKLLGKKIP 71 (178)
T ss_pred HHHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEECCCCCChh---HhHHHHHHHHHHHhCCCC
Confidence 457888888998888865531 1222225799999999964333 346788899999999999
Q ss_pred EEEEchHHHHHHHc
Q 015523 318 YGAVCSSPIVLHKH 331 (405)
Q Consensus 318 i~aic~g~~~La~a 331 (405)
|.+||.|..+|+.+
T Consensus 72 vlGIC~G~Q~l~~~ 85 (178)
T cd01744 72 IFGICLGHQLLALA 85 (178)
T ss_pred EEEECHHHHHHHHH
Confidence 99999999999875
No 112
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.52 E-value=0.0005 Score=75.92 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=74.3
Q ss_pred CCCcEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523 15 SFALNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 93 (405)
Q Consensus 15 ~~~~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~ 93 (405)
...+||+|+.++|.+ +.|. ...|..+||++..+..+.- ..+ .....+|++|++|||+...+
T Consensus 1035 ~~~pkVaVl~~pGtN~~~e~---~~Af~~aGf~~~~V~~~dl--~~~-------------~~~L~~~~glv~pGGFSyGD 1096 (1307)
T PLN03206 1035 TSKPKVAIIREEGSNGDREM---AAAFYAAGFEPWDVTMSDL--LNG-------------RISLDDFRGIVFVGGFSYAD 1096 (1307)
T ss_pred CCCCeEEEEECCCCCCHHHH---HHHHHHcCCceEEEEeeec--ccc-------------cccccceeEEEEcCcCCCcc
Confidence 345799999999988 4554 5566688999887765531 110 11124799999999963222
Q ss_pred ----------ccccChHHHHHHHHHH-HcCCEEEEEccchHHhhhhcCCCCCcc
Q 015523 94 ----------RLRDCEILKKITSKQA-EEKRLYGAICAAPAVTLLPWGLLRRKQ 136 (405)
Q Consensus 94 ----------~~~~~~~~~~~l~~~~-~~~~~i~aic~g~~~~La~agll~g~~ 136 (405)
....++.+++.+++|+ +.++++.+||+|-. +|.+.|+|.|-+
T Consensus 1097 ~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQ-iL~~lgllPg~~ 1149 (1307)
T PLN03206 1097 VLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQ-LMALLGWVPGPQ 1149 (1307)
T ss_pred ccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHH-HHHHcCCCCCCc
Confidence 2334678899999999 55999999999766 799999998753
No 113
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=97.43 E-value=0.00054 Score=76.09 Aligned_cols=101 Identities=13% Similarity=0.065 Sum_probs=73.3
Q ss_pred CCcEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523 16 FALNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 94 (405)
Q Consensus 16 ~~~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~ 94 (405)
+.+||+|+.++|.+ +.|. ...|..+||++..+..+.- .. ......+|++|++|||+...+.
T Consensus 1054 ~~p~vail~~pG~N~~~e~---~~Af~~aGf~~~~v~~~dl--~~-------------~~~~l~~~~~lv~~GGFSygD~ 1115 (1310)
T TIGR01735 1054 VRPKVAILREQGVNGDREM---AAAFDRAGFEAWDVHMSDL--LA-------------GRVHLDEFRGLAACGGFSYGDV 1115 (1310)
T ss_pred CCceEEEEECCCCCCHHHH---HHHHHHhCCCcEEEEEecc--cc-------------CCcchhheeEEEEcCCCCCccc
Confidence 45699999999988 4554 3466688998888875441 00 0112236999999999632222
Q ss_pred ----------cccChHHHHHHHHHH-HcCCEEEEEccchHHhhh-hcCCCCCc
Q 015523 95 ----------LRDCEILKKITSKQA-EEKRLYGAICAAPAVTLL-PWGLLRRK 135 (405)
Q Consensus 95 ----------~~~~~~~~~~l~~~~-~~~~~i~aic~g~~~~La-~agll~g~ 135 (405)
...++.+++.+++|+ +.++++.+||+|-. +|. +.|++.|.
T Consensus 1116 lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~~~gllp~~ 1167 (1310)
T TIGR01735 1116 LGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQ-MLSNLLEWIPGT 1167 (1310)
T ss_pred hhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHH-HHHHHhCcCCCC
Confidence 334678899999999 88999999999877 677 99999864
No 114
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=97.43 E-value=0.00076 Score=59.27 Aligned_cols=87 Identities=20% Similarity=0.303 Sum_probs=61.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 300 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~ 300 (405)
|||+|+ |..+... ..+.+.|++.|++++++..+.. ..+++ ..+|.||+.||..... .
T Consensus 2 ~~ilii--d~~dsf~-~~i~~~l~~~g~~~~v~~~~~~---------------~~~~l--~~~d~iIi~gGp~~~~---~ 58 (190)
T PRK06895 2 TKLLII--NNHDSFT-FNLVDLIRKLGVPMQVVNVEDL---------------DLDEV--ENFSHILISPGPDVPR---A 58 (190)
T ss_pred cEEEEE--eCCCchH-HHHHHHHHHcCCcEEEEECCcc---------------ChhHh--ccCCEEEECCCCCChH---H
Confidence 455555 4433333 4489999999999998876542 12333 4689999888864322 2
Q ss_pred ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.+.+.++|++ .+.++|+.+||-|..+|+.+
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~ 88 (190)
T PRK06895 59 YPQLFAMLER-YHQHKSILGVCLGHQTLCEF 88 (190)
T ss_pred hhHHHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 3467788886 67899999999999999876
No 115
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.42 E-value=0.0024 Score=61.70 Aligned_cols=144 Identities=17% Similarity=0.136 Sum_probs=96.3
Q ss_pred CeEcCCCc---ccHHHHHHHHHHHhcChHHHHHHHHhcccccccCcccccccccc-ccccCCcCEEEEEeCCCCcHHHHH
Q 015523 162 EVTTSRGP---GTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEV-EWFFDRMPRVLIPIANGSEEIEIV 237 (405)
Q Consensus 162 ~iiT~~g~---~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~V~il~~~g~~~~e~~ 237 (405)
+++++.-. ...++-+-.++++...-+.-..+++.=. +. ...+.+. +.......||+|.--.-|+.. +-
T Consensus 190 GLV~a~E~~~~~~~~~~~a~~v~~~vDld~l~~ia~~~~----~~---~~~~~~~~~~~~~~~~rIAVA~D~AF~Fy-Y~ 261 (451)
T COG1797 190 GLVPASERLELEAKLEALAEVVEKHVDLDALLEIASSAG----PL---EPDLSPEPERGNPLGVRIAVARDAAFNFY-YP 261 (451)
T ss_pred ccccchhhhhHHHHHHHHHHHHHhhCCHHHHHHHHhccC----CC---CCCccccccccCCcCceEEEEecchhccc-cH
Confidence 35555432 3345666677777777776666664210 00 1111111 111112368998865544332 23
Q ss_pred HHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch--HhhhcChHHHHHHHHHhhcC
Q 015523 238 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA--ERLQKSRILKKLLKEQKVAG 315 (405)
Q Consensus 238 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~--~~~~~~~~l~~~l~~~~~~~ 315 (405)
.-++.|+..|+++...||-.+ +++ |++.|+|++|||++.. ..+..++..++.|+++...|
T Consensus 262 ~nl~~Lr~~GAelv~FSPL~D-----------------~~l-P~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G 323 (451)
T COG1797 262 ENLELLREAGAELVFFSPLAD-----------------EEL-PPDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAG 323 (451)
T ss_pred HHHHHHHHCCCEEEEeCCcCC-----------------CCC-CCCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcC
Confidence 367899999999999998764 333 2358999999999643 45788999999999999999
Q ss_pred CEEEEEchHHHHHHHc
Q 015523 316 RIYGAVCSSPIVLHKH 331 (405)
Q Consensus 316 k~i~aic~g~~~La~a 331 (405)
++|.+=|.|-+.|.+.
T Consensus 324 ~piyaECGGlMYL~~~ 339 (451)
T COG1797 324 KPIYAECGGLMYLGES 339 (451)
T ss_pred CceEEecccceeehhh
Confidence 9999999999999864
No 116
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=97.41 E-value=0.0005 Score=61.30 Aligned_cols=87 Identities=16% Similarity=0.121 Sum_probs=59.6
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCch-h--hh
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP-G--SV 93 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~-~--~~ 93 (405)
++||+|+-|..-+..+ +.+.|++.++++.++.... ++. ++|.||+||+.. . ..
T Consensus 1 ~~~v~iid~~~GN~~s---l~~al~~~g~~v~vv~~~~-------------------~l~--~~d~iIlPG~g~~~~~~~ 56 (210)
T CHL00188 1 MMKIGIIDYSMGNLHS---VSRAIQQAGQQPCIINSES-------------------ELA--QVHALVLPGVGSFDLAMK 56 (210)
T ss_pred CcEEEEEEcCCccHHH---HHHHHHHcCCcEEEEcCHH-------------------Hhh--hCCEEEECCCCchHHHHH
Confidence 4689999988555544 4777888899888884211 222 589999999421 1 11
Q ss_pred ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 94 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
.+. ...+.+.|+++.++++|+.+||.|-. +|++.
T Consensus 57 ~l~-~~gl~~~i~~~~~~~~pvlGIClG~Q-ll~~~ 90 (210)
T CHL00188 57 KLE-KKGLITPIKKWIAEGNPFIGICLGLH-LLFET 90 (210)
T ss_pred HHH-HCCHHHHHHHHHHcCCCEEEECHHHH-HHhhc
Confidence 121 23466778888899999999999755 67764
No 117
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.33 E-value=0.0011 Score=73.98 Aligned_cols=100 Identities=11% Similarity=0.072 Sum_probs=71.9
Q ss_pred CCcEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523 16 FALNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 94 (405)
Q Consensus 16 ~~~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~ 94 (405)
.+.||+|+.++|.+ +.|. ...|+.+||++..+..+.- .... ..+ .+|+++++|||+...+.
T Consensus 1034 ~~pkv~il~~pG~N~~~e~---~~Af~~aG~~~~~v~~~dl--~~~~-----------~~l--~~~~~l~~~GGFS~gD~ 1095 (1290)
T PRK05297 1034 ARPKVAILREQGVNSHVEM---AAAFDRAGFDAIDVHMSDL--LAGR-----------VTL--EDFKGLVACGGFSYGDV 1095 (1290)
T ss_pred CCCeEEEEECCCCCCHHHH---HHHHHHcCCCeEEEEeecC--cCCC-----------CCh--hhCcEEEECCccCCccc
Confidence 35699999999988 4454 5566689999888775541 1000 123 47999999999633222
Q ss_pred ----------cccChHHHHHHHHHH-HcCCEEEEEccchHHhhhhcC-CCCC
Q 015523 95 ----------LRDCEILKKITSKQA-EEKRLYGAICAAPAVTLLPWG-LLRR 134 (405)
Q Consensus 95 ----------~~~~~~~~~~l~~~~-~~~~~i~aic~g~~~~La~ag-ll~g 134 (405)
+..++.+++.+++|+ ++++++.+||+|-. +|.+.| ++.+
T Consensus 1096 lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~lg~l~p~ 1146 (1290)
T PRK05297 1096 LGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQ-MMSNLKEIIPG 1146 (1290)
T ss_pred chHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHH-HHHHhCCccCC
Confidence 234578889999977 78899999999766 799998 7655
No 118
>PRK09065 glutamine amidotransferase; Provisional
Probab=97.29 E-value=0.002 Score=58.68 Aligned_cols=96 Identities=19% Similarity=0.166 Sum_probs=62.4
Q ss_pred cCEEEEEeCCCCcH--H-HHHHHHHH----HHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCc
Q 015523 220 MPRVLIPIANGSEE--I-EIVTIVDI----LRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGV 292 (405)
Q Consensus 220 ~~~V~il~~~g~~~--~-e~~~~~~~----l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~ 292 (405)
|++++||..+.-.+ . ......+. |...+.+++++.+..+ ..+.+. .+||++||.||.
T Consensus 1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~p~~--~~~dgvvi~Gg~ 64 (237)
T PRK09065 1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAG--------------EPLPAP--DDFAGVIITGSW 64 (237)
T ss_pred CCcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCC--------------CCCCCh--hhcCEEEEeCCC
Confidence 56788887664322 1 12223333 3345677777655543 112333 679999999996
Q ss_pred cchHh-hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 293 AGAER-LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 293 ~~~~~-~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
..... ..-...+.++|+++.+.+++|.+||-|..+|+.+
T Consensus 65 ~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 104 (237)
T PRK09065 65 AMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHA 104 (237)
T ss_pred cccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHH
Confidence 43221 1122567899999999999999999999999876
No 119
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.29 E-value=0.0013 Score=63.56 Aligned_cols=91 Identities=20% Similarity=0.202 Sum_probs=70.1
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh--hhcc
Q 015523 18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG--SVRL 95 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~--~~~~ 95 (405)
.||+|-. |..-..=+-.-++.|+..|+++...||-.+ +++| .+.|++++|||++. ...+
T Consensus 246 ~rIAVA~-D~AF~FyY~~nl~~Lr~~GAelv~FSPL~D-----------------~~lP-~~~D~vYlgGGYPElfA~~L 306 (451)
T COG1797 246 VRIAVAR-DAAFNFYYPENLELLREAGAELVFFSPLAD-----------------EELP-PDVDAVYLGGGYPELFAEEL 306 (451)
T ss_pred ceEEEEe-cchhccccHHHHHHHHHCCCEEEEeCCcCC-----------------CCCC-CCCCEEEeCCCChHHHHHHH
Confidence 5899874 422222233447899999999999998775 2444 35899999999864 3667
Q ss_pred ccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
.+++.+++.|++++..|++|.+=|.| ..+|.+
T Consensus 307 ~~n~~~~~~i~~~~~~G~piyaECGG-lMYL~~ 338 (451)
T COG1797 307 SANESMRRAIKAFAAAGKPIYAECGG-LMYLGE 338 (451)
T ss_pred hhCHHHHHHHHHHHHcCCceEEeccc-ceeehh
Confidence 88999999999999999999999995 546664
No 120
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.20 E-value=0.0019 Score=64.53 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=65.7
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh--hcc
Q 015523 18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS--VRL 95 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~--~~~ 95 (405)
.||+|.-.+-|+..= ..=++.|++.++++..+++-.+ ++++ ++|+|++|||++.. ..+
T Consensus 245 ~~Iava~d~afnFy~-~~~~~~L~~~g~~~~~~~~~~d-----------------~~l~--~~d~l~ipGG~~~~~~~~l 304 (449)
T TIGR00379 245 VRIAVAQDQAFNFYY-QDNLDALTHNAAELVPFSPLED-----------------TELP--DVDAVYIGGGFPELFAEEL 304 (449)
T ss_pred cEEEEEechhhceeH-HHHHHHHHHCCCEEEEECCccC-----------------CCCC--CCCEEEeCCcHHHHHHHHH
Confidence 589999876554410 2224667778999999887543 1233 68999999997432 335
Q ss_pred ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
..+..+.+.|+++.++|.+|.++|.| ..+|++.
T Consensus 305 ~~~~~~~~~i~~~~~~G~pv~g~CgG-~~~L~~~ 337 (449)
T TIGR00379 305 SQNQALRDSIKTFIHQGLPIYGECGG-LMYLSQS 337 (449)
T ss_pred HhhhHHHHHHHHHHHcCCCEEEEcHH-HHHHHhh
Confidence 55778899999999999999999995 5467764
No 121
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.19 E-value=0.00051 Score=58.47 Aligned_cols=51 Identities=29% Similarity=0.217 Sum_probs=41.2
Q ss_pred CcccEEEEcCCchhh--hccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 78 QVFDLIALPGGMPGS--VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 78 ~~~d~liipgg~~~~--~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
.++|+|++|||++.. ..+.++..+.+.|+++.+++++|.++|.| ..+|.+.
T Consensus 6 ~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG-~~~Lg~~ 58 (158)
T PF07685_consen 6 PDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGG-YQYLGES 58 (158)
T ss_pred CCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchH-HHHHHHH
Confidence 479999999997433 33456778999999999999999999995 5567753
No 122
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.19 E-value=0.00085 Score=59.75 Aligned_cols=85 Identities=15% Similarity=0.067 Sum_probs=58.3
Q ss_pred EEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc--cc
Q 015523 20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL--RD 97 (405)
Q Consensus 20 i~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~--~~ 97 (405)
|.|+-+. ......+.+.|++.|.+++++... .++ .+||.+|+|||....... ..
T Consensus 2 i~~~d~~---~~~~~~i~~~l~~~G~~v~~~~~~-------------------~~l--~~~d~iiipG~~~~~~~~~~~~ 57 (205)
T PRK13141 2 IAIIDYG---MGNLRSVEKALERLGAEAVITSDP-------------------EEI--LAADGVILPGVGAFPDAMANLR 57 (205)
T ss_pred EEEEEcC---CchHHHHHHHHHHCCCeEEEECCH-------------------HHh--ccCCEEEECCCCchHHHHHHHH
Confidence 4444444 344577789999999999886311 123 269999999963212211 11
Q ss_pred ChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 98 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 98 ~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
...+.++|+++.++++|+.++|.|.+ +|++.
T Consensus 58 ~~~~~~~i~~~~~~~~pvlGIC~G~Q-ll~~~ 88 (205)
T PRK13141 58 ERGLDEVIKEAVASGKPLLGICLGMQ-LLFES 88 (205)
T ss_pred HcChHHHHHHHHHCCCcEEEECHHHH-Hhhhc
Confidence 23578899999999999999999766 68875
No 123
>PRK05665 amidotransferase; Provisional
Probab=97.19 E-value=0.0035 Score=57.14 Aligned_cols=50 Identities=20% Similarity=0.104 Sum_probs=36.9
Q ss_pred cccEEEEcCCchhhhc-cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 79 VFDLIALPGGMPGSVR-LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 79 ~~d~liipgg~~~~~~-~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
+||++||.||..+... ..-...+.+||++++++++|+.+||-|.. +|+.+
T Consensus 57 ~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQ-lla~A 107 (240)
T PRK05665 57 KFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQ-LLALL 107 (240)
T ss_pred cCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHH-HHHHH
Confidence 6999999999422211 11124678999999999999999999766 57653
No 124
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=97.14 E-value=0.00054 Score=58.71 Aligned_cols=50 Identities=28% Similarity=0.366 Sum_probs=38.9
Q ss_pred CCccEEEEcCCccc-hHhhhcChHHHHHHHHHhhcC-CEEEEEchHHHHHHH
Q 015523 281 SVYDLIILPGGVAG-AERLQKSRILKKLLKEQKVAG-RIYGAVCSSPIVLHK 330 (405)
Q Consensus 281 ~~~D~livpgG~~~-~~~~~~~~~l~~~l~~~~~~~-k~i~aic~g~~~La~ 330 (405)
.+.|.||+|||-.- +..+.+...+.+.|+++.++| +||.+.|+|..+|++
T Consensus 32 ~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~ 83 (188)
T PF01174_consen 32 EGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAK 83 (188)
T ss_dssp TT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEE
T ss_pred ccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhh
Confidence 56799999999632 234666778999999999998 999999999999987
No 125
>PHA03366 FGAM-synthase; Provisional
Probab=97.12 E-value=0.0034 Score=69.96 Aligned_cols=100 Identities=11% Similarity=0.012 Sum_probs=73.9
Q ss_pred CCCcEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523 15 SFALNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 93 (405)
Q Consensus 15 ~~~~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~ 93 (405)
....||+|+.++|.+ +.|. ...|..+||++..+.-+.- ... .. ..+|+.|++|||+...+
T Consensus 1026 ~~~prVaIl~~pG~N~~~e~---~~Af~~aGf~~~~v~~~dL-----------~~~----~~-l~~f~glv~~GGFS~gD 1086 (1304)
T PHA03366 1026 DKRHRVAVLLLPGCPGPHAL---LAAFTNAGFDPYPVSIEEL-----------KDG----TF-LDEFSGLVIGGSSGAED 1086 (1304)
T ss_pred CCCCeEEEEECCCCCCHHHH---HHHHHHcCCceEEEEeecC-----------CCC----Cc-cccceEEEEcCCCCCcc
Confidence 345699999999988 4444 5566779999988876541 000 11 23799999999974322
Q ss_pred c----------cccChHHHHHHHHHH-HcCCEEEEEcc-chHHhhhhcCCCCC
Q 015523 94 R----------LRDCEILKKITSKQA-EEKRLYGAICA-APAVTLLPWGLLRR 134 (405)
Q Consensus 94 ~----------~~~~~~~~~~l~~~~-~~~~~i~aic~-g~~~~La~agll~g 134 (405)
. ...++.+++.+++|+ +.++.+.+||+ |-. +|.+.|++.+
T Consensus 1087 ~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q-~L~~lgll~~ 1138 (1304)
T PHA03366 1087 SYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQ-ILFALKAVGS 1138 (1304)
T ss_pred cccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHH-HHHHcCCccC
Confidence 2 235788999999999 55999999999 988 7999999943
No 126
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=97.11 E-value=0.0012 Score=54.74 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=61.1
Q ss_pred eccCCCCCcEEEEEecCCCchhhHHHHHHHHHhcCCE--EEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcC
Q 015523 10 SFISPSFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQ--VTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG 87 (405)
Q Consensus 10 s~~~~~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~--v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipg 87 (405)
+.|....+.-||+|..+|.-.+.....-.-+....|. +++...+ +-.|+. +.|++||||
T Consensus 4 asM~GKtn~VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~~~~tVK-----------------T~~D~a--q~DaLIIPG 64 (226)
T KOG3210|consen 4 ASMTGKTNVVIGVLALQGAFIEHVNHVEKCIVENRYEIKLSVMTVK-----------------TKNDLA--QCDALIIPG 64 (226)
T ss_pred ccccCCcceEEeeeehhhHHHHHHHHHHHhhccCcceEEEEEEeec-----------------CHHHHh--hCCEEEecC
Confidence 4555556678999999987666644333333333232 2222222 223443 689999999
Q ss_pred Cchhh-hccccChHHHHHHHHHHHcC-CEEEEEccchHHhhh
Q 015523 88 GMPGS-VRLRDCEILKKITSKQAEEK-RLYGAICAAPAVTLL 127 (405)
Q Consensus 88 g~~~~-~~~~~~~~~~~~l~~~~~~~-~~i~aic~g~~~~La 127 (405)
|.... ..+.+-..+..-|.++..++ +++.+.|.| ..+|.
T Consensus 65 GEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAG-mI~LS 105 (226)
T KOG3210|consen 65 GESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAG-MIYLS 105 (226)
T ss_pred CchhHHHHHHhhhhhHHHHHHHhcCCCccceeechh-hhhhh
Confidence 96433 22334455888888888888 999999995 54444
No 127
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=97.11 E-value=0.00073 Score=59.81 Aligned_cols=74 Identities=24% Similarity=0.333 Sum_probs=54.6
Q ss_pred HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh--hhcChHHHHHHHHHhhc
Q 015523 237 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER--LQKSRILKKLLKEQKVA 314 (405)
Q Consensus 237 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~--~~~~~~l~~~l~~~~~~ 314 (405)
....+.|++.|++++++... +++ .++|+|++|||...... ......+.++++++.++
T Consensus 12 ~~~~~~l~~~g~~v~v~~~~-------------------~~l--~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~ 70 (198)
T cd01748 12 RSVANALERLGAEVIITSDP-------------------EEI--LSADKLILPGVGAFGDAMANLRERGLIEALKEAIAS 70 (198)
T ss_pred HHHHHHHHHCCCeEEEEcCh-------------------HHh--ccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHC
Confidence 34578888899988887521 123 56899999996321111 12334578999999999
Q ss_pred CCEEEEEchHHHHHHHc
Q 015523 315 GRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 315 ~k~i~aic~g~~~La~a 331 (405)
+++|.+||.|..+|+.+
T Consensus 71 ~~pilGiC~G~q~l~~~ 87 (198)
T cd01748 71 GKPFLGICLGMQLLFES 87 (198)
T ss_pred CCcEEEECHHHHHhccc
Confidence 99999999999999997
No 128
>PRK00784 cobyric acid synthase; Provisional
Probab=97.10 E-value=0.0019 Score=65.39 Aligned_cols=87 Identities=21% Similarity=0.184 Sum_probs=65.6
Q ss_pred cCEEEEEeCC-CCcHHHHHHHHHHHHh-CCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523 220 MPRVLIPIAN-GSEEIEIVTIVDILRR-AKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 297 (405)
Q Consensus 220 ~~~V~il~~~-g~~~~e~~~~~~~l~~-~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~ 297 (405)
+.||+|+-+| -|+. .=++.|.. .|+++.++++.. ++ +++|+|++|||......
T Consensus 251 ~~~i~v~~~~~a~~f----~nl~~l~~~~g~~v~~~s~~~-------------------~l--~~~d~lilpGg~~~~~~ 305 (488)
T PRK00784 251 ALRIAVIRLPRISNF----TDFDPLRAEPGVDVRYVRPGE-------------------PL--PDADLVILPGSKNTIAD 305 (488)
T ss_pred ceEEEEEeCCCcCCc----cChHHHhhcCCCeEEEECCcc-------------------cc--ccCCEEEECCccchHHH
Confidence 3589999977 3454 34566776 888888886532 22 46899999999743332
Q ss_pred --hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 298 --LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 298 --~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
+..+..+.+.|+++.++|++|.++|.|..+|++.
T Consensus 306 ~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~ 341 (488)
T PRK00784 306 LAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRR 341 (488)
T ss_pred HHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhh
Confidence 3355568899999999999999999999999873
No 129
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=97.07 E-value=0.0018 Score=55.57 Aligned_cols=49 Identities=18% Similarity=0.132 Sum_probs=36.2
Q ss_pred cccEEEEcCCchh-hhccccChHHHHHHHHHHHcC-CEEEEEccchHHhhhh
Q 015523 79 VFDLIALPGGMPG-SVRLRDCEILKKITSKQAEEK-RLYGAICAAPAVTLLP 128 (405)
Q Consensus 79 ~~d~liipgg~~~-~~~~~~~~~~~~~l~~~~~~~-~~i~aic~g~~~~La~ 128 (405)
+.|.||||||... ...+.....+.+-|+++..++ +||.+.|.| ..+||+
T Consensus 33 ~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAG-lIlLa~ 83 (188)
T PF01174_consen 33 GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAG-LILLAK 83 (188)
T ss_dssp T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHH-HHHHEE
T ss_pred cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHH-HHHhhh
Confidence 5899999999633 344556668899999999998 999999994 667776
No 130
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.03 E-value=0.0032 Score=55.72 Aligned_cols=85 Identities=22% Similarity=0.225 Sum_probs=56.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh--hc
Q 015523 223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL--QK 300 (405)
Q Consensus 223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~--~~ 300 (405)
|+|+=|..-+..++ ...|++.|++++++.. .+++ .++|.||+||+....... ..
T Consensus 2 i~vid~g~gn~~~~---~~~l~~~g~~v~~~~~-------------------~~~l--~~~d~lilpG~g~~~~~~~~l~ 57 (199)
T PRK13181 2 IAIIDYGAGNLRSV---ANALKRLGVEAVVSSD-------------------PEEI--AGADKVILPGVGAFGQAMRSLR 57 (199)
T ss_pred EEEEeCCCChHHHH---HHHHHHCCCcEEEEcC-------------------hHHh--ccCCEEEECCCCCHHHHHHHHH
Confidence 44554444344444 4477788888777611 1233 568999999964211211 12
Q ss_pred ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
...+.++|+++.+.+++|.+||.|..+|+.+
T Consensus 58 ~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~ 88 (199)
T PRK13181 58 ESGLDEALKEHVEKKQPVLGICLGMQLLFES 88 (199)
T ss_pred HCChHHHHHHHHHCCCCEEEECHhHHHhhhh
Confidence 2346788898889999999999999999996
No 131
>PRK09065 glutamine amidotransferase; Provisional
Probab=97.01 E-value=0.0027 Score=57.82 Aligned_cols=95 Identities=14% Similarity=0.007 Sum_probs=58.9
Q ss_pred CcEEEEEecCCCch---hhHHHHHHHHHh----cCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCc
Q 015523 17 ALNVLVPVGFGTEE---MEAVIIVDVLRR----AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGM 89 (405)
Q Consensus 17 ~~ki~ill~~g~~~---~e~~~~~~~l~~----~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~ 89 (405)
|+||+||..+.-.. .......++|.. .+.+++++-+..+ ..+.+. .+||.+||.||.
T Consensus 1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~p~~--~~~dgvvi~Gg~ 64 (237)
T PRK09065 1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAG--------------EPLPAP--DDFAGVIITGSW 64 (237)
T ss_pred CCcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCC--------------CCCCCh--hhcCEEEEeCCC
Confidence 45799997664322 223334455543 5677776655443 111223 369999999994
Q ss_pred hhhhc-cccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 90 PGSVR-LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 90 ~~~~~-~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
..... ..-...+.+||+++.++++||.+||-|.. +|+.
T Consensus 65 ~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~ 103 (237)
T PRK09065 65 AMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQ-LLAH 103 (237)
T ss_pred cccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHH-HHHH
Confidence 21111 11124568999999999999999999766 5665
No 132
>PRK07567 glutamine amidotransferase; Provisional
Probab=97.00 E-value=0.0035 Score=57.22 Aligned_cols=97 Identities=21% Similarity=0.178 Sum_probs=57.2
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhCCCe---EEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVD---VVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 296 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~---v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~ 296 (405)
|+.|+|+-.............+.|.+.+.. ++++....+ +....+ +.+||++||.||..+..
T Consensus 1 m~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~dgvIi~Gg~~~~~ 65 (242)
T PRK07567 1 MKPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDRE-------------PLPDLD--LDDYSGVIVGGSPFNVS 65 (242)
T ss_pred CCcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccC-------------CCCCCC--HhhccEEEEcCCCCcCC
Confidence 455666655433322125556677766644 555443332 001112 36799999999964332
Q ss_pred hh--hcC-------hHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 297 RL--QKS-------RILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 297 ~~--~~~-------~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.. ... ..+.++++.....+++|.+||-|..+|+.+
T Consensus 66 d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a 109 (242)
T PRK07567 66 DPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHH 109 (242)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHH
Confidence 21 001 123455555668999999999999999987
No 133
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=96.98 E-value=0.003 Score=56.60 Aligned_cols=79 Identities=18% Similarity=0.253 Sum_probs=57.3
Q ss_pred HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCC
Q 015523 237 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGR 316 (405)
Q Consensus 237 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k 316 (405)
....+.|.+.|+++.++..+.. .. ++ ..+. ..+||+||+.||..... +....+++++++.++++
T Consensus 14 ~~~~~~l~~~G~~~~~~~~~~~-~~---------~~--~~~~-~~~~dgliisGGp~~~~---~~~~~~~~i~~~~~~~~ 77 (214)
T PRK07765 14 FNLVQYLGQLGVEAEVWRNDDP-RL---------AD--EAAV-AAQFDGVLLSPGPGTPE---RAGASIDMVRACAAAGT 77 (214)
T ss_pred HHHHHHHHHcCCcEEEEECCCc-CH---------HH--HHHh-hcCCCEEEECCCCCChh---hcchHHHHHHHHHhCCC
Confidence 3567888999999999866542 00 11 1111 24699999999964332 34556799999999999
Q ss_pred EEEEEchHHHHHHHc
Q 015523 317 IYGAVCSSPIVLHKH 331 (405)
Q Consensus 317 ~i~aic~g~~~La~a 331 (405)
||.+||-|..+|+.+
T Consensus 78 PiLGIC~G~Qlla~a 92 (214)
T PRK07765 78 PLLGVCLGHQAIGVA 92 (214)
T ss_pred CEEEEccCHHHHHHH
Confidence 999999999999865
No 134
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.98 E-value=0.0033 Score=56.09 Aligned_cols=90 Identities=22% Similarity=0.208 Sum_probs=55.2
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCE--EEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh-
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQ--VTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV- 93 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~--v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~- 93 (405)
+|||+|+=|..-+..++ .+.|++.|++ +.++.. .+++ .++|.|||||+.....
T Consensus 1 ~~~~~iid~g~gn~~s~---~~al~~~g~~~~v~~~~~-------------------~~~l--~~~d~lIlpG~~~~~~~ 56 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSA---AKALERAGAGADVVVTAD-------------------PDAV--AAADRVVLPGVGAFADC 56 (209)
T ss_pred CCeEEEEECCCChHHHH---HHHHHHcCCCccEEEECC-------------------HHHh--cCCCEEEECCCCcHHHH
Confidence 46899987776555554 6777777874 333221 1233 3699999999732111
Q ss_pred --ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCC
Q 015523 94 --RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGL 131 (405)
Q Consensus 94 --~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agl 131 (405)
.+........+++..++.++|+.++|.|.. +|++.+.
T Consensus 57 ~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q-~l~~~~~ 95 (209)
T PRK13146 57 MRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQ-LLFERGL 95 (209)
T ss_pred HHHHHHCCcHHHHHHHHHhCCCcEEEECHHHH-HHhhccc
Confidence 121111223345545678999999999755 7888753
No 135
>PRK06490 glutamine amidotransferase; Provisional
Probab=96.98 E-value=0.0028 Score=57.77 Aligned_cols=96 Identities=11% Similarity=0.018 Sum_probs=65.1
Q ss_pred CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523 16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 95 (405)
Q Consensus 16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~ 95 (405)
.++||.||.-.+++. ...+.+.|+..+++++++.+..+++ .| +++ .+||.+||.||..+..+.
T Consensus 6 ~~~~vlvi~h~~~~~--~g~l~~~l~~~g~~~~v~~~~~~~~---------~p----~~l--~~~dgvii~Ggp~~~~d~ 68 (239)
T PRK06490 6 DKRPVLIVLHQERST--PGRVGQLLQERGYPLDIRRPRLGDP---------LP----DTL--EDHAGAVIFGGPMSANDP 68 (239)
T ss_pred CCceEEEEecCCCCC--ChHHHHHHHHCCCceEEEeccCCCC---------CC----Ccc--cccCEEEEECCCCCCCCC
Confidence 467888887555444 4457889999999999887654310 11 122 369999999984222111
Q ss_pred c-cChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 96 R-DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 96 ~-~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
. -...+.+||+++++.++|+.+||-|.. +|+.+
T Consensus 69 ~~wi~~~~~~i~~~~~~~~PvLGIC~G~Q-lla~a 102 (239)
T PRK06490 69 DDFIRREIDWISVPLKENKPFLGICLGAQ-MLARH 102 (239)
T ss_pred chHHHHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence 1 123467899999999999999999866 67765
No 136
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.97 E-value=0.0036 Score=55.23 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=52.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcC-CccchHhh-
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG-GVAGAERL- 298 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpg-G~~~~~~~- 298 (405)
|+|+|+=|-.-+...+ ...|++.+++++++... +++ .++|.||+|| |. .....
T Consensus 1 m~i~iid~g~gn~~s~---~~~l~~~g~~~~~v~~~-------------------~~~--~~~d~iIlPG~G~-~~~~~~ 55 (196)
T PRK13170 1 MNVVIIDTGCANLSSV---KFAIERLGYEPVVSRDP-------------------DVI--LAADKLFLPGVGT-AQAAMD 55 (196)
T ss_pred CeEEEEeCCCchHHHH---HHHHHHCCCeEEEECCH-------------------HHh--CCCCEEEECCCCc-hHHHHH
Confidence 4677776654455444 44777788888777321 223 4579999999 43 22221
Q ss_pred -hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 299 -QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 299 -~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.....+.+.++ +.++||.+||.|..+|+.+
T Consensus 56 ~l~~~~l~~~i~---~~~~PilGIClG~Qll~~~ 86 (196)
T PRK13170 56 QLRERELIDLIK---ACTQPVLGICLGMQLLGER 86 (196)
T ss_pred HHHHcChHHHHH---HcCCCEEEECHHHHHHhhh
Confidence 11123445554 3589999999999999987
No 137
>PRK00784 cobyric acid synthase; Provisional
Probab=96.95 E-value=0.0027 Score=64.21 Aligned_cols=89 Identities=19% Similarity=0.077 Sum_probs=63.3
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHh-cCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc-
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRR-AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR- 94 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~-~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~- 94 (405)
+.||+|+-+|...-. .=++.|+. .|+++.++++.. +++ ++|.|++|||.+....
T Consensus 251 ~~~i~v~~~~~a~~f---~nl~~l~~~~g~~v~~~s~~~-------------------~l~--~~d~lilpGg~~~~~~~ 306 (488)
T PRK00784 251 ALRIAVIRLPRISNF---TDFDPLRAEPGVDVRYVRPGE-------------------PLP--DADLVILPGSKNTIADL 306 (488)
T ss_pred ceEEEEEeCCCcCCc---cChHHHhhcCCCeEEEECCcc-------------------ccc--cCCEEEECCccchHHHH
Confidence 368999997742222 33567776 788888887632 233 5899999999643322
Q ss_pred -cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC
Q 015523 95 -LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG 130 (405)
Q Consensus 95 -~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag 130 (405)
+..+..+.+.|+++.++++||.++|.| ..+|++.-
T Consensus 307 ~~~~~~~l~~~i~~~~~~g~pilg~C~G-~~~L~~~~ 342 (488)
T PRK00784 307 AWLRESGWDEAIRAHARRGGPVLGICGG-YQMLGRRI 342 (488)
T ss_pred HHHHHcCHHHHHHHHHHcCCeEEEECHH-HHHHhhhc
Confidence 334556889999999999999999996 54677643
No 138
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=96.93 E-value=0.003 Score=55.47 Aligned_cols=87 Identities=17% Similarity=0.304 Sum_probs=58.5
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcccc
Q 015523 18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD 97 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~ 97 (405)
|||+|+ |+.+... ..+.+.|++.|++++++..+.. ..+++. .||.|||.||. +.. ..
T Consensus 2 ~~ilii--d~~dsf~-~~i~~~l~~~g~~~~v~~~~~~---------------~~~~l~--~~d~iIi~gGp-~~~--~~ 58 (190)
T PRK06895 2 TKLLII--NNHDSFT-FNLVDLIRKLGVPMQVVNVEDL---------------DLDEVE--NFSHILISPGP-DVP--RA 58 (190)
T ss_pred cEEEEE--eCCCchH-HHHHHHHHHcCCcEEEEECCcc---------------ChhHhc--cCCEEEECCCC-CCh--HH
Confidence 455544 4444444 3489999999999999876432 011222 58999988883 322 12
Q ss_pred ChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 98 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 98 ~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
.+.+.++|++ ++.++|+.+||-|.. +|+.+
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIClG~Q-lla~~ 88 (190)
T PRK06895 59 YPQLFAMLER-YHQHKSILGVCLGHQ-TLCEF 88 (190)
T ss_pred hhHHHHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence 3567788876 788999999999766 67765
No 139
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=96.92 E-value=0.003 Score=55.40 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=53.9
Q ss_pred HHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcC
Q 015523 236 IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAG 315 (405)
Q Consensus 236 ~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~ 315 (405)
+..+.+.|++.|++++++..+.. .++++..++|.|++|||.... .+....+++++..+.+
T Consensus 11 ~~~l~~~l~~~g~~~~~~~~~~~----------------~~~~~~~~~~glii~Gg~~~~----~~~~~~~~i~~~~~~~ 70 (188)
T TIGR00888 11 TQLIARRLRELGVYSELVPNTTP----------------LEEIREKNPKGIILSGGPSSV----YAENAPRADEKIFELG 70 (188)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCC----------------HHHHhhcCCCEEEECCCCCCc----CcCCchHHHHHHHhCC
Confidence 34567788888988887755431 222211246799999996432 2223567888888999
Q ss_pred CEEEEEchHHHHHHHc
Q 015523 316 RIYGAVCSSPIVLHKH 331 (405)
Q Consensus 316 k~i~aic~g~~~La~a 331 (405)
+||.+||-|..+|+.+
T Consensus 71 ~PilGIC~G~Qll~~~ 86 (188)
T TIGR00888 71 VPVLGICYGMQLMAKQ 86 (188)
T ss_pred CCEEEECHHHHHHHHh
Confidence 9999999999999876
No 140
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.89 E-value=0.0086 Score=60.79 Aligned_cols=89 Identities=16% Similarity=0.145 Sum_probs=62.8
Q ss_pred CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh-
Q 015523 219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER- 297 (405)
Q Consensus 219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~- 297 (405)
.+++|+|+=|-.-+..++ ...|++.++++.++.. .+++ .++|.||+||+......
T Consensus 5 ~~~~i~iiDyG~GN~~sl---~~al~~~G~~v~~v~~-------------------~~~l--~~~D~lIlpG~gs~~~~m 60 (538)
T PLN02617 5 ADSEVTLLDYGAGNVRSV---RNAIRHLGFTIKDVQT-------------------PEDI--LNADRLIFPGVGAFGSAM 60 (538)
T ss_pred CCCeEEEEECCCCCHHHH---HHHHHHCCCeEEEECC-------------------hhhh--ccCCEEEECCCCCHHHHH
Confidence 468899887776566654 5666678888866531 1233 57899999996422121
Q ss_pred -hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 298 -LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 298 -~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
......+.+.|+++...++|+.+||.|..+|+.+
T Consensus 61 ~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~ 95 (538)
T PLN02617 61 DVLNNRGMAEALREYIQNDRPFLGICLGLQLLFES 95 (538)
T ss_pred HHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence 1223347788898889999999999999999974
No 141
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=96.88 E-value=0.0041 Score=53.94 Aligned_cols=88 Identities=24% Similarity=0.284 Sum_probs=62.9
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcC-Ccc--chH
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG-GVA--GAE 296 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpg-G~~--~~~ 296 (405)
|++|+|+=|.--+...+ ...|++.|+++.+.+. .+++ ...|.||+|| |.- .+.
T Consensus 1 m~~i~IIDyg~GNL~Sv---~~Aler~G~~~~vs~d-------------------~~~i--~~AD~liLPGVGaf~~am~ 56 (204)
T COG0118 1 MMMVAIIDYGSGNLRSV---KKALERLGAEVVVSRD-------------------PEEI--LKADKLILPGVGAFGAAMA 56 (204)
T ss_pred CCEEEEEEcCcchHHHH---HHHHHHcCCeeEEecC-------------------HHHH--hhCCEEEecCCCCHHHHHH
Confidence 57899998876676664 4556667766654422 2334 5789999999 431 123
Q ss_pred hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC
Q 015523 297 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 332 (405)
Q Consensus 297 ~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG 332 (405)
.+.+. .+.+.|++....++|+.+||-|..+|.+.+
T Consensus 57 ~L~~~-gl~~~i~~~~~~~kP~LGIClGMQlLfe~S 91 (204)
T COG0118 57 NLRER-GLIEAIKEAVESGKPFLGICLGMQLLFERS 91 (204)
T ss_pred HHHhc-chHHHHHHHHhcCCCEEEEeHhHHhhhhcc
Confidence 34333 889999999999999999999999997543
No 142
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=96.87 E-value=0.0061 Score=67.68 Aligned_cols=99 Identities=12% Similarity=0.011 Sum_probs=73.0
Q ss_pred CCcEEEEEecCCCch-hhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523 16 FALNVLVPVGFGTEE-MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 94 (405)
Q Consensus 16 ~~~ki~ill~~g~~~-~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~ 94 (405)
...||+|+.++|.+- .|. ...|..+||++..+..+.- .. | .. . .+|++|++|||....+.
T Consensus 928 ~~p~VaIl~~pG~N~~~e~---~~Af~~aGf~~~~v~~~dl--~~---~------~~---l--~~f~glv~~Ggfsy~D~ 988 (1202)
T TIGR01739 928 PRHQVAVLLLPGQSVPHGL---LAALTNAGFDPRIVSITEL--KK---T------DF---L--DTFSGLIIGGASGTLDS 988 (1202)
T ss_pred CCCeEEEEeCCCCCCHHHH---HHHHHHcCCceEEEEeccC--CC---C------Cc---h--hheEEEEEcCcCCCCcc
Confidence 356999999999884 444 5667779999988876652 00 0 01 1 26999999998632222
Q ss_pred ----------cccChHHHHHHHHHH-HcCCEEEEEcc-chHHhhhhcCCCCC
Q 015523 95 ----------LRDCEILKKITSKQA-EEKRLYGAICA-APAVTLLPWGLLRR 134 (405)
Q Consensus 95 ----------~~~~~~~~~~l~~~~-~~~~~i~aic~-g~~~~La~agll~g 134 (405)
+..++.+++.+++|+ +.++++.+||+ |-. +|.+.|++..
T Consensus 989 lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q-~L~~lg~l~~ 1039 (1202)
T TIGR01739 989 EVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQ-LLLALNIVGY 1039 (1202)
T ss_pred chHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHH-HHHHcCCCcC
Confidence 334788999999999 55999999999 988 7999999853
No 143
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=96.85 E-value=0.0032 Score=62.16 Aligned_cols=89 Identities=22% Similarity=0.231 Sum_probs=63.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch--Hhh
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA--ERL 298 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~--~~~ 298 (405)
.||+|.-=.-|+..= ---++.|+++ .++..+||-.. +++ +++|+|++|||+... ..+
T Consensus 234 ~~iavA~D~AF~FyY-~enl~~L~~~-aelv~fSPl~~-----------------~~l--p~~D~l~lpGG~~e~~~~~L 292 (433)
T PRK13896 234 PTVAVARDAAFCFRY-PATIERLRER-ADVVTFSPVAG-----------------DPL--PDCDGVYLPGGYPELHADAL 292 (433)
T ss_pred CeEEEEEcCccceeC-HHHHHHHHhc-CcEEEEcCCCC-----------------CCC--CCCCEEEeCCCchhhHHHHH
Confidence 589988755443321 2245677777 88999988543 223 368999999998432 224
Q ss_pred hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
..+... +.|+++.++|++|.++|.|-.+|++.
T Consensus 293 ~~n~~~-~~i~~~~~~G~pi~aeCGG~q~L~~~ 324 (433)
T PRK13896 293 ADSPAL-DELADRAADGLPVLGECGGLMALAES 324 (433)
T ss_pred HhCCcH-HHHHHHHHCCCcEEEEehHHHHhhcc
Confidence 445455 88999999999999999999999874
No 144
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=96.84 E-value=0.0049 Score=51.20 Aligned_cols=96 Identities=15% Similarity=0.189 Sum_probs=63.6
Q ss_pred CCcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch-H
Q 015523 218 DRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-E 296 (405)
Q Consensus 218 ~~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~-~ 296 (405)
..+.-|+++...|.-...+-.+-..+....|.+.+- +.+-.+-.|+ .+.|++|||||..-. .
T Consensus 9 Ktn~VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~~---------------~~tVKT~~D~--aq~DaLIIPGGEST~ms 71 (226)
T KOG3210|consen 9 KTNVVIGVLALQGAFIEHVNHVEKCIVENRYEIKLS---------------VMTVKTKNDL--AQCDALIIPGGESTAMS 71 (226)
T ss_pred CcceEEeeeehhhHHHHHHHHHHHhhccCcceEEEE---------------EEeecCHHHH--hhCCEEEecCCchhHHH
Confidence 345678999999876666554444444443433321 1122233555 788999999996322 2
Q ss_pred hhhcChHHHHHHHHHhhcC-CEEEEEchHHHHHHH
Q 015523 297 RLQKSRILKKLLKEQKVAG-RIYGAVCSSPIVLHK 330 (405)
Q Consensus 297 ~~~~~~~l~~~l~~~~~~~-k~i~aic~g~~~La~ 330 (405)
.+.+-..+.+-|.++..++ +++-+.|+|..+|.+
T Consensus 72 lia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~ 106 (226)
T KOG3210|consen 72 LIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQ 106 (226)
T ss_pred HHHhhhhhHHHHHHHhcCCCccceeechhhhhhhh
Confidence 3444455888888888777 999999999999975
No 145
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=96.83 E-value=0.0025 Score=56.41 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=55.2
Q ss_pred hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc---cccChHHHHHHH
Q 015523 30 EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR---LRDCEILKKITS 106 (405)
Q Consensus 30 ~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~---~~~~~~~~~~l~ 106 (405)
...+..+.+.|++.|++++++.... +++ +||+||+||+. .... ......+.++++
T Consensus 8 ~~~~~~~~~~l~~~g~~v~v~~~~~-------------------~l~--~~d~iiipG~~-~~~~~~~~~~~~~~~~~i~ 65 (198)
T cd01748 8 MGNLRSVANALERLGAEVIITSDPE-------------------EIL--SADKLILPGVG-AFGDAMANLRERGLIEALK 65 (198)
T ss_pred CChHHHHHHHHHHCCCeEEEEcChH-------------------Hhc--cCCEEEECCCC-cHHHHHHHHHHcChHHHHH
Confidence 3445666889999999988876211 122 59999999962 2211 112345789999
Q ss_pred HHHHcCCEEEEEccchHHhhhhc
Q 015523 107 KQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 107 ~~~~~~~~i~aic~g~~~~La~a 129 (405)
++.++++||.++|.|-. +|+.+
T Consensus 66 ~~~~~~~pilGiC~G~q-~l~~~ 87 (198)
T cd01748 66 EAIASGKPFLGICLGMQ-LLFES 87 (198)
T ss_pred HHHHCCCcEEEECHHHH-Hhccc
Confidence 99999999999999655 78886
No 146
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=96.81 E-value=0.0037 Score=54.27 Aligned_cols=74 Identities=20% Similarity=0.101 Sum_probs=53.0
Q ss_pred HHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCE
Q 015523 35 IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRL 114 (405)
Q Consensus 35 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~ 114 (405)
.+.+.+++.|+++.++..+.. .++....+||+|+++||...+. +.....++++++.++++|
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgiil~GG~~~~~---~~~~~~~~~~~~~~~~~P 71 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNTD----------------AEEILKLDPDGIFLSNGPGDPA---LLDEAIKTVRKLLGKKIP 71 (178)
T ss_pred HHHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEECCCCCChh---HhHHHHHHHHHHHhCCCC
Confidence 457888888999888865532 0111223699999999932222 346788899999999999
Q ss_pred EEEEccchHHhhhh
Q 015523 115 YGAICAAPAVTLLP 128 (405)
Q Consensus 115 i~aic~g~~~~La~ 128 (405)
+.+||.|.. +|+.
T Consensus 72 vlGIC~G~Q-~l~~ 84 (178)
T cd01744 72 IFGICLGHQ-LLAL 84 (178)
T ss_pred EEEECHHHH-HHHH
Confidence 999999866 4554
No 147
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=96.80 E-value=0.009 Score=57.61 Aligned_cols=88 Identities=14% Similarity=0.080 Sum_probs=63.8
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 299 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~ 299 (405)
.+||+++=+ |+- ...++.|.+.|+.+.++..+. .++++...++|.|+++||..++..
T Consensus 177 ~~~I~viD~-G~k----~nivr~L~~~G~~v~vvp~~~----------------~~~~i~~~~~DGIvLSgGPgdp~~-- 233 (360)
T PRK12564 177 KYKVVAIDF-GVK----RNILRELAERGCRVTVVPATT----------------TAEEILALNPDGVFLSNGPGDPAA-- 233 (360)
T ss_pred CCEEEEEeC-CcH----HHHHHHHHHCCCEEEEEeCCC----------------CHHHHHhcCCCEEEEeCCCCChHH--
Confidence 357777744 432 347888888999998885443 123322236999999999654433
Q ss_pred cChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.+..+++++++.++++||.+||-|..+|+.+
T Consensus 234 -~~~~~~~i~~~~~~~~PilGIClG~QlLa~a 264 (360)
T PRK12564 234 -LDYAIEMIRELLEKKIPIFGICLGHQLLALA 264 (360)
T ss_pred -HHHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 3678899999988899999999999999765
No 148
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=96.78 E-value=0.0037 Score=55.17 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=50.5
Q ss_pred HHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh---hhcChHHHHHHHHHh
Q 015523 236 IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER---LQKSRILKKLLKEQK 312 (405)
Q Consensus 236 ~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~---~~~~~~l~~~l~~~~ 312 (405)
+..+.+.|+..|.+++++..+ +++ +++|.|++||+...... +.... ...+++++.
T Consensus 11 ~~~l~~~l~~~g~~v~v~~~~-------------------~~l--~~~d~lii~G~~~~~~~~~~l~~~~-~~~l~~~~~ 68 (196)
T TIGR01855 11 LGSVKRALKRVGAEPVVVKDS-------------------KEA--ELADKLILPGVGAFGAAMARLRENG-LDLFVELVV 68 (196)
T ss_pred HHHHHHHHHHCCCcEEEEcCH-------------------HHh--ccCCEEEECCCCCHHHHHHHHHHcC-cHHHHHHHH
Confidence 456777788888888877521 122 46899999995321111 22222 334447788
Q ss_pred hcCCEEEEEchHHHHHHHc
Q 015523 313 VAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 313 ~~~k~i~aic~g~~~La~a 331 (405)
..+++|.+||.|..+|+.+
T Consensus 69 ~~~~pvlGiC~G~Qll~~~ 87 (196)
T TIGR01855 69 RLGKPVLGICLGMQLLFER 87 (196)
T ss_pred hCCCCEEEECHHHHHhhhc
Confidence 8999999999999999998
No 149
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=96.77 E-value=0.0063 Score=54.43 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=67.7
Q ss_pred CcCEEEEEeCCCCcHHH-HHHHHHHHHhC-CCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523 219 RMPRVLIPIANGSEEIE-IVTIVDILRRA-KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 296 (405)
Q Consensus 219 ~~~~V~il~~~g~~~~e-~~~~~~~l~~~-~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~ 296 (405)
...||+++-.......| +......|.+. |+++..+.... . +...+.+ ..+|+|++|||. ..
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~------------~-~~~~~~l--~~ad~I~l~GG~--~~ 92 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD------------T-EDPLDAL--LEADVIYVGGGN--TF 92 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC------------c-ccHHHHH--hcCCEEEECCch--HH
Confidence 45788888776554333 56678888999 88877664321 1 1113334 678999999984 33
Q ss_pred hh---hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 297 RL---QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 297 ~~---~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.+ .+...+.+.|++..++|++++++|.|+.++...
T Consensus 93 ~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 93 NLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred HHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 32 233367888888889999999999999999884
No 150
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.016 Score=51.01 Aligned_cols=55 Identities=24% Similarity=0.265 Sum_probs=43.0
Q ss_pred cCcCCCCccEEEEcCCccchHhhhc--ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 276 SDAAESVYDLIILPGGVAGAERLQK--SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 276 ~~~~~~~~D~livpgG~~~~~~~~~--~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
++++...+|++|+.||..+.. ... .+...++|++....+++|.+||-|..+||.+
T Consensus 39 ~~~~~~~~~giIlsGgp~sv~-~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~ 95 (198)
T COG0518 39 EELPLDSPDGIIISGGPMSVY-DEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKA 95 (198)
T ss_pred ccccccCCCEEEEcCCCCCCc-cccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHH
Confidence 334334569999999974322 233 6789999999999999999999999999874
No 151
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=96.72 E-value=0.0053 Score=53.79 Aligned_cols=87 Identities=11% Similarity=0.166 Sum_probs=59.9
Q ss_pred EEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHH
Q 015523 225 IPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRIL 304 (405)
Q Consensus 225 il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l 304 (405)
|++.|+++... ..+.+.|.+.|+++.++..+.. .++++...++|.||+-||.+.+.. ....
T Consensus 2 il~idn~Dsft-~nl~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iils~GPg~p~~---~~~~ 62 (187)
T PRK08007 2 ILLIDNYDSFT-WNLYQYFCELGADVLVKRNDAL---------------TLADIDALKPQKIVISPGPCTPDE---AGIS 62 (187)
T ss_pred EEEEECCCccH-HHHHHHHHHCCCcEEEEeCCCC---------------CHHHHHhcCCCEEEEcCCCCChHH---CCcc
Confidence 44555554444 3477888888999888765431 223332246899999998755543 3445
Q ss_pred HHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 305 KKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 305 ~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
+++++. +..++||.+||-|..+|+.+
T Consensus 63 ~~~~~~-~~~~~PiLGIClG~Q~la~a 88 (187)
T PRK08007 63 LDVIRH-YAGRLPILGVCLGHQAMAQA 88 (187)
T ss_pred HHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence 666665 56789999999999999876
No 152
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=96.71 E-value=0.0053 Score=48.74 Aligned_cols=88 Identities=18% Similarity=0.288 Sum_probs=58.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccc--hHhhh
Q 015523 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG--AERLQ 299 (405)
Q Consensus 222 ~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~--~~~~~ 299 (405)
+|+|..-+|....-+-.....|+... .+..++.+. + .+..++ .++|.|++|||... +..+.
T Consensus 1 ~v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~---I---------~~~~~~----~~ad~lVlPGGa~~~~~~~L~ 63 (114)
T cd03144 1 NVLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADE---L---------AVGPWE----SKTALLVVPGGADLPYCRALN 63 (114)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHH---H---------hcCchh----hCCCEEEECCCChHHHHHHHH
Confidence 36666677888888888888887644 344333321 0 011122 46899999998532 22333
Q ss_pred cChHHHHHHHHHhhcCCEEEEEchHHHHH
Q 015523 300 KSRILKKLLKEQKVAGRIYGAVCSSPIVL 328 (405)
Q Consensus 300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~L 328 (405)
.. . .+.|+++.++|+++.+||.|+.+.
T Consensus 64 ~~-g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 64 GK-G-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred hh-C-cHHHHHHHHCCCcEEEEecCccce
Confidence 33 3 888888889999999999999876
No 153
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.71 E-value=0.0086 Score=52.38 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=56.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh--hc
Q 015523 223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL--QK 300 (405)
Q Consensus 223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~--~~ 300 (405)
|+|+=|..-+..++. ..|++.++++.++... +++ .++|.||+||+-.-...+ .+
T Consensus 2 i~iidyg~gN~~s~~---~al~~~g~~~~~v~~~-------------------~~l--~~~D~lIlPG~g~~~~~~~~L~ 57 (192)
T PRK13142 2 IVIVDYGLGNISNVK---RAIEHLGYEVVVSNTS-------------------KII--DQAETIILPGVGHFKDAMSEIK 57 (192)
T ss_pred EEEEEcCCccHHHHH---HHHHHcCCCEEEEeCH-------------------HHh--ccCCEEEECCCCCHHHHHHHHH
Confidence 788888877776654 5555677777765322 233 468999999984211111 12
Q ss_pred ChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC
Q 015523 301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 332 (405)
Q Consensus 301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG 332 (405)
...+.+.|++ ..++++.+||.|..+|++..
T Consensus 58 ~~gl~~~i~~--~~g~PvlGIClGmQlL~~~~ 87 (192)
T PRK13142 58 RLNLNAILAK--NTDKKMIGICLGMQLMYEHS 87 (192)
T ss_pred HCCcHHHHHH--hCCCeEEEECHHHHHHhhhc
Confidence 2236777776 57999999999999998653
No 154
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=96.70 E-value=0.007 Score=53.19 Aligned_cols=87 Identities=9% Similarity=0.152 Sum_probs=59.0
Q ss_pred EEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHH
Q 015523 225 IPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRIL 304 (405)
Q Consensus 225 il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l 304 (405)
|++.|..+... ..+.+.|++.|++++++..+.. .++++...++|.||+-||...+.+ ....
T Consensus 2 il~id~~dsf~-~nl~~~l~~~~~~~~v~~~~~~---------------~~~~~~~~~~~~iilsgGP~~~~~---~~~~ 62 (191)
T PRK06774 2 LLLIDNYDSFT-YNLYQYFCELGTEVMVKRNDEL---------------QLTDIEQLAPSHLVISPGPCTPNE---AGIS 62 (191)
T ss_pred EEEEECCCchH-HHHHHHHHHCCCcEEEEeCCCC---------------CHHHHHhcCCCeEEEcCCCCChHh---CCCc
Confidence 34445444333 4477888889999988875532 233332246899999998755443 3334
Q ss_pred HHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 305 KKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 305 ~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
..+++. ++.++||.+||-|..+|+.+
T Consensus 63 ~~~i~~-~~~~~PiLGIC~G~Qlla~~ 88 (191)
T PRK06774 63 LAVIRH-FADKLPILGVCLGHQALGQA 88 (191)
T ss_pred hHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence 566654 56789999999999999986
No 155
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=96.69 E-value=0.0067 Score=53.19 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=53.0
Q ss_pred HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCC
Q 015523 237 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGR 316 (405)
Q Consensus 237 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k 316 (405)
....+.|.+.|+.+.++..+.. .++++...++|.||+.||.+.... .....++++++ .+++
T Consensus 13 ~~~~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iilsgGpg~p~~---~~~~~~~i~~~-~~~~ 73 (188)
T TIGR00566 13 YNLVQYFCELGAEVVVKRNDSL---------------TLQEIEALLPLLIVISPGPCTPNE---AGISLEAIRHF-AGKL 73 (188)
T ss_pred HHHHHHHHHcCCceEEEECCCC---------------CHHHHHhcCCCEEEEcCCCCChhh---cchhHHHHHHh-ccCC
Confidence 3467777778888887765532 122332246899999888754432 23347788877 6789
Q ss_pred EEEEEchHHHHHHHc
Q 015523 317 IYGAVCSSPIVLHKH 331 (405)
Q Consensus 317 ~i~aic~g~~~La~a 331 (405)
||.+||-|..+|+.+
T Consensus 74 PvLGIC~G~Qll~~~ 88 (188)
T TIGR00566 74 PILGVCLGHQAMGQA 88 (188)
T ss_pred CEEEECHHHHHHHHH
Confidence 999999999999876
No 156
>PRK05380 pyrG CTP synthetase; Validated
Probab=96.67 E-value=0.01 Score=59.45 Aligned_cols=227 Identities=14% Similarity=0.063 Sum_probs=124.5
Q ss_pred CcccEEEEc-CCchhhhccccChHHHHHHHHHHHc-C-CEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-----
Q 015523 78 QVFDLIALP-GGMPGSVRLRDCEILKKITSKQAEE-K-RLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT----- 149 (405)
Q Consensus 78 ~~~d~liip-gg~~~~~~~~~~~~~~~~l~~~~~~-~-~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~----- 149 (405)
.++|++|+= ||. ..+ .++.++++.+|++..+ | .-++.+-..-.-+|..+|=++-|. |=|- ...|++
T Consensus 131 ~~~dv~i~EiGGT--vGD-iEs~pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~E~KtKP-tQhs--v~~lr~~Gi~p 204 (533)
T PRK05380 131 TDADVVIVEIGGT--VGD-IESLPFLEAIRQLRLELGRENVLFIHLTLVPYIAAAGELKTKP-TQHS--VKELRSIGIQP 204 (533)
T ss_pred CCCCEEEEEeCCc--ccc-ccccHHHHHHHHHHHhhCCCcEEEEEEeccceecCCCcccCCc-hHHH--HHHHHhCCCCC
Confidence 368999984 663 222 2456777778876644 2 222222221233455666554433 1121 111221
Q ss_pred --------Ccccc----C----cEEEeCCeEcCCCcccHHHHHHHHHHHhcChHHHHHHHHhccccc-ccCccccccccc
Q 015523 150 --------FWAVK----S----NIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHN-ADNSLKKEEFNE 212 (405)
Q Consensus 150 --------~~~~~----~----~~v~dg~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~-~~~~~~~~~~~~ 212 (405)
.+..+ + --|...++|.+-...+.++.=+.+-++ .+.+.+.+.|.++. .++...|..+-.
T Consensus 205 d~i~~R~~~~l~~~~~~Kia~fc~v~~~~vi~~~d~~~iy~vPl~l~~q----~~~~~i~~~l~l~~~~~~~~~w~~~~~ 280 (533)
T PRK05380 205 DILVCRSERPLPEEEKRKIALFCNVPEEAVISAPDVDSIYEVPLLLHEQ----GLDDIVLERLGLEAPEPDLSEWEELVE 280 (533)
T ss_pred CEEEEecCCCCCHHHHHHHHhccCCCHHHEEEcCCCccHHhhhHHHHHC----CCHHHHHHHcCCCCCCCCHHHHHHHHH
Confidence 00000 0 023345788888887777766665554 44556777777764 222223333322
Q ss_pred cccccCCcCEEEEEe-CCCCcHHHHHHHHHHHHhCC----CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEE
Q 015523 213 VEWFFDRMPRVLIPI-ANGSEEIEIVTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLII 287 (405)
Q Consensus 213 ~~~~~~~~~~V~il~-~~g~~~~e~~~~~~~l~~~~----~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~li 287 (405)
.........+|+++- |-...+. ...+.+.|..++ .++++...+.. .+.. +...+.+ ..+|.|+
T Consensus 281 ~~~~~~~~v~IalVGKY~~l~Da-Y~Sv~eAL~hag~~~~~~v~i~wIdse-~l~~--------~~~~~~L--~~~DGII 348 (533)
T PRK05380 281 RLKNPKGEVTIALVGKYVELPDA-YKSVIEALKHAGIANDVKVNIKWIDSE-DLEE--------ENVAELL--KGVDGIL 348 (533)
T ss_pred HHhCCCCceEEEEEeCccCCcHH-HHHHHHHHHHHHHHcCCeeEEEEEChh-hccC--------cchhhHh--hcCCEEE
Confidence 111123346777764 3333333 566777887775 45666655543 2211 1112223 6789999
Q ss_pred EcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523 288 LPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK 330 (405)
Q Consensus 288 vpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~ 330 (405)
+|||++. . ..+..+++++.+..+++|+.+||-|..+++-
T Consensus 349 lpGGfG~-~---~~~g~i~~i~~a~e~~iPiLGIClGmQll~v 387 (533)
T PRK05380 349 VPGGFGE-R---GIEGKILAIRYARENNIPFLGICLGMQLAVI 387 (533)
T ss_pred ecCCCCc-c---ccccHHHHHHHHHHCCCcEEEEchHHHHHHH
Confidence 9999743 2 2335678888888999999999999987753
No 157
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=96.66 E-value=0.0064 Score=48.28 Aligned_cols=88 Identities=23% Similarity=0.220 Sum_probs=57.8
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCch--hhhccc
Q 015523 19 NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP--GSVRLR 96 (405)
Q Consensus 19 ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~--~~~~~~ 96 (405)
+|+|+--+|.....+....+.|+... .+..++.+. +. +..++ .++|.||+|||.. .+..+.
T Consensus 1 ~v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~---I~---------~~~~~----~~ad~lVlPGGa~~~~~~~L~ 63 (114)
T cd03144 1 NVLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADE---LA---------VGPWE----SKTALLVVPGGADLPYCRALN 63 (114)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHH---Hh---------cCchh----hCCCEEEECCCChHHHHHHHH
Confidence 46777777888888888888887744 444443322 11 11111 3689999999842 123333
Q ss_pred cChHHHHHHHHHHHcCCEEEEEccchHHhhh
Q 015523 97 DCEILKKITSKQAEEKRLYGAICAAPAVTLL 127 (405)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La 127 (405)
.. . .+.|+++.++++++.+||.| + .++
T Consensus 64 ~~-g-~~~i~~~v~~g~p~LGIClG-A-y~a 90 (114)
T cd03144 64 GK-G-NRRIRNFVRNGGNYLGICAG-A-YLA 90 (114)
T ss_pred hh-C-cHHHHHHHHCCCcEEEEecC-c-cce
Confidence 32 3 77888888999999999995 6 355
No 158
>PRK05670 anthranilate synthase component II; Provisional
Probab=96.62 E-value=0.0077 Score=52.83 Aligned_cols=80 Identities=19% Similarity=0.165 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHh
Q 015523 233 EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQK 312 (405)
Q Consensus 233 ~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~ 312 (405)
++=.....+.|++.|+.++++..+.. . ...++. .++|.||+.||.++... .....++++++
T Consensus 9 d~f~~~i~~~l~~~g~~~~v~~~~~~-~-----------~~~~~~---~~~dglIlsgGpg~~~d---~~~~~~~l~~~- 69 (189)
T PRK05670 9 DSFTYNLVQYLGELGAEVVVYRNDEI-T-----------LEEIEA---LNPDAIVLSPGPGTPAE---AGISLELIREF- 69 (189)
T ss_pred CchHHHHHHHHHHCCCcEEEEECCCC-C-----------HHHHHh---CCCCEEEEcCCCCChHH---cchHHHHHHHh-
Confidence 33445678889999999998877642 0 011222 34899999888644433 23456677764
Q ss_pred hcCCEEEEEchHHHHHHHc
Q 015523 313 VAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 313 ~~~k~i~aic~g~~~La~a 331 (405)
..++||.+||-|..+|+.+
T Consensus 70 ~~~~PvLGIClG~Qlla~a 88 (189)
T PRK05670 70 AGKVPILGVCLGHQAIGEA 88 (189)
T ss_pred cCCCCEEEECHHHHHHHHH
Confidence 5679999999999999876
No 159
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=96.60 E-value=0.0093 Score=51.74 Aligned_cols=88 Identities=20% Similarity=0.220 Sum_probs=60.5
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcC-Cc--hhhh
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG-GM--PGSV 93 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipg-g~--~~~~ 93 (405)
+++|+|+=|.--+ +......|++.|+++.+..... .+. ..|.||+|| |. ..+.
T Consensus 1 m~~i~IIDyg~GN---L~Sv~~Aler~G~~~~vs~d~~-------------------~i~--~AD~liLPGVGaf~~am~ 56 (204)
T COG0118 1 MMMVAIIDYGSGN---LRSVKKALERLGAEVVVSRDPE-------------------EIL--KADKLILPGVGAFGAAMA 56 (204)
T ss_pred CCEEEEEEcCcch---HHHHHHHHHHcCCeeEEecCHH-------------------HHh--hCCEEEecCCCCHHHHHH
Confidence 4678888766444 4555777778887776654322 232 589999998 42 2233
Q ss_pred ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC
Q 015523 94 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG 130 (405)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag 130 (405)
.+.+. .+.+.|++....++|+.+||-|-. +|.+.+
T Consensus 57 ~L~~~-gl~~~i~~~~~~~kP~LGIClGMQ-lLfe~S 91 (204)
T COG0118 57 NLRER-GLIEAIKEAVESGKPFLGICLGMQ-LLFERS 91 (204)
T ss_pred HHHhc-chHHHHHHHHhcCCCEEEEeHhHH-hhhhcc
Confidence 34333 789999999999999999999755 566543
No 160
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=96.49 E-value=0.011 Score=51.72 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=51.0
Q ss_pred HHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCE
Q 015523 238 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI 317 (405)
Q Consensus 238 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~ 317 (405)
.....|++.|++++++..+.. +..+.+. .++|++|+.||..... ++ .....+++...+++|
T Consensus 13 ~~~~~l~~~G~~~~~~~~~~~-------------~~~~~~~--~~~dgvil~gG~~~~~---~~-~~~~~i~~~~~~~~P 73 (184)
T cd01743 13 NLVQYLRELGAEVVVVRNDEI-------------TLEELEL--LNPDAIVISPGPGHPE---DA-GISLEIIRALAGKVP 73 (184)
T ss_pred HHHHHHHHcCCceEEEeCCCC-------------CHHHHhh--cCCCEEEECCCCCCcc---cc-hhHHHHHHHHhcCCC
Confidence 366788888999998877653 1111122 5799999977753321 12 244455555677899
Q ss_pred EEEEchHHHHHHHc
Q 015523 318 YGAVCSSPIVLHKH 331 (405)
Q Consensus 318 i~aic~g~~~La~a 331 (405)
|.+||-|..+|+.+
T Consensus 74 vlGIC~G~Qlla~~ 87 (184)
T cd01743 74 ILGVCLGHQAIAEA 87 (184)
T ss_pred EEEECHhHHHHHHH
Confidence 99999999999886
No 161
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=96.48 E-value=0.017 Score=55.62 Aligned_cols=94 Identities=16% Similarity=0.253 Sum_probs=67.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhC---CCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRA---KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 297 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~---~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~ 297 (405)
|+|+|.--+|.....+...++.|++. .|.|..++.+. +..+ .+. .+++++++|||......
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~-----------l~~~-pw~----~~~~LlV~PGG~d~~y~ 64 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADE-----------LLNE-PWQ----SKCALLVMPGGADLPYC 64 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHH-----------hhcC-ccc----cCCcEEEECCCcchHHH
Confidence 57888888899999999999998763 47777664432 1111 111 45899999999632222
Q ss_pred hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523 298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK 330 (405)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~ 330 (405)
-.-++.-.+.||+|.++|+--.+||+|+.+-.+
T Consensus 65 ~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 65 RSLNGEGNRRIRQFVENGGGYLGICAGAYYASS 97 (367)
T ss_pred HhhChHHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence 223566788999999999999999999998764
No 162
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=96.44 E-value=0.019 Score=51.96 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=64.6
Q ss_pred cCEEEEEeCCCC--cHHH-HHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523 220 MPRVLIPIANGS--EEIE-IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 296 (405)
Q Consensus 220 ~~~V~il~~~g~--~~~e-~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~ 296 (405)
.+||+++-+-.. +..+ +....+.|.+.|+++..+-... ...+.+ .+.|+|+++||. ..
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~---------------d~~~~l--~~ad~I~v~GGn--t~ 91 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVA---------------DPVAAI--ENAEAIFVGGGN--TF 91 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccch---------------hhHHHH--hcCCEEEECCcc--HH
Confidence 467777765442 2222 4457888889999877552211 112223 568999999994 44
Q ss_pred h---hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC
Q 015523 297 R---LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 332 (405)
Q Consensus 297 ~---~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG 332 (405)
. ......+.+.|++..++|+++++.|+|+.+++...
T Consensus 92 ~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 92 QLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTI 130 (233)
T ss_pred HHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccc
Confidence 3 23455688889999999999999999999987643
No 163
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=96.43 E-value=0.012 Score=51.84 Aligned_cols=87 Identities=8% Similarity=0.088 Sum_probs=58.4
Q ss_pred EEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHH
Q 015523 225 IPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRIL 304 (405)
Q Consensus 225 il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l 304 (405)
|++.|..+... ....+.|++.|+.++++..+.. .+++....++|.+++-||..+... +...
T Consensus 2 il~id~~dsft-~~~~~~l~~~g~~~~~~~~~~~---------------~~~~~~~~~~~~iilsgGp~~~~~---~~~~ 62 (193)
T PRK08857 2 LLMIDNYDSFT-YNLYQYFCELGAQVKVVRNDEI---------------DIDGIEALNPTHLVISPGPCTPNE---AGIS 62 (193)
T ss_pred EEEEECCCCcH-HHHHHHHHHCCCcEEEEECCCC---------------CHHHHhhCCCCEEEEeCCCCChHH---Ccch
Confidence 44445444443 3378888999999999876633 111111135789999888654432 3345
Q ss_pred HHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 305 KKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 305 ~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.++++. .+.+.||.+||-|..+|+.+
T Consensus 63 ~~~i~~-~~~~~PiLGIClG~Qlia~a 88 (193)
T PRK08857 63 LQAIEH-FAGKLPILGVCLGHQAIAQV 88 (193)
T ss_pred HHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 677765 57899999999999999876
No 164
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=96.41 E-value=0.0082 Score=60.00 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=33.3
Q ss_pred CCccEEEEcCCccchH-hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 281 SVYDLIILPGGVAGAE-RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 281 ~~~D~livpgG~~~~~-~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.++|+||+|||.-... .+ ...+.+.|+++ |++|.+||.|..+|++.
T Consensus 35 ~~~D~lILPGG~~~~~~~l--~~~l~~~i~~~---g~pvlGICgG~QmLg~~ 81 (476)
T PRK06278 35 KDLDGLIIPGGSLVESGSL--TDELKKEILNF---DGYIIGICSGFQILSEK 81 (476)
T ss_pred ccCCEEEECCCchhhcchH--HHHHHHHHHHc---CCeEEEEcHHHHhcccc
Confidence 6789999999841101 11 23455666555 99999999999999887
No 165
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=96.40 E-value=0.012 Score=51.18 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=49.9
Q ss_pred HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCC
Q 015523 237 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGR 316 (405)
Q Consensus 237 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k 316 (405)
..+.+.|++.|+.+.++..+.. .++.+..++|.||+|||...... ..... +.++..+.++
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgvIl~Gg~~~~~~-~~~~~---~~~~~~~~~~ 71 (181)
T cd01742 12 HLIARRVRELGVYSEILPNTTP----------------LEEIKLKNPKGIILSGGPSSVYE-EDAPR---VDPEIFELGV 71 (181)
T ss_pred HHHHHHHHhcCceEEEecCCCC----------------hhhhcccCCCEEEECCCcccccc-cccch---hhHHHHhcCC
Confidence 3467888888988887765431 11112367999999999643221 11122 3344456799
Q ss_pred EEEEEchHHHHHHHc
Q 015523 317 IYGAVCSSPIVLHKH 331 (405)
Q Consensus 317 ~i~aic~g~~~La~a 331 (405)
++.+||.|..+|+.+
T Consensus 72 PilGIC~G~Qll~~~ 86 (181)
T cd01742 72 PVLGICYGMQLIAKA 86 (181)
T ss_pred CEEEEcHHHHHHHHh
Confidence 999999999999985
No 166
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.37 E-value=0.0069 Score=54.00 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=56.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCcc---chHhhh
Q 015523 223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVA---GAERLQ 299 (405)
Q Consensus 223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~---~~~~~~ 299 (405)
|+|+=|-.-+. ......|+..++++.+++. .+++ .++|.||+||+-. .+..+.
T Consensus 2 i~iidyg~gNl---~s~~~al~~~~~~~~~~~~-------------------~~~l--~~~d~iIlPG~g~~~~~~~~l~ 57 (210)
T PRK14004 2 IAILDYGMGNI---HSCLKAVSLYTKDFVFTSD-------------------PETI--ENSKALILPGDGHFDKAMENLN 57 (210)
T ss_pred EEEEECCCchH---HHHHHHHHHcCCeEEEECC-------------------HHHh--ccCCEEEECCCCchHHHHHHHH
Confidence 56665554444 4445555556666655422 2233 4689999999752 122333
Q ss_pred cChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
. ..+.+.|+++..++++|.+||.|..+|+++
T Consensus 58 ~-~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~ 88 (210)
T PRK14004 58 S-TGLRSTIDKHVESGKPLFGICIGFQILFES 88 (210)
T ss_pred H-cCcHHHHHHHHHcCCCEEEECHhHHHHHHh
Confidence 3 358888898899999999999999999885
No 167
>CHL00101 trpG anthranilate synthase component 2
Probab=96.37 E-value=0.015 Score=51.08 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=51.8
Q ss_pred HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCC
Q 015523 237 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGR 316 (405)
Q Consensus 237 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k 316 (405)
..+.+.|++.|+++.++..+.. .++++...++|+||+-||.+...+ ......++ +....++
T Consensus 13 ~~l~~~l~~~g~~~~v~~~~~~---------------~~~~~~~~~~dgiiisgGpg~~~~---~~~~~~i~-~~~~~~~ 73 (190)
T CHL00101 13 YNLVQSLGELNSDVLVCRNDEI---------------DLSKIKNLNIRHIIISPGPGHPRD---SGISLDVI-SSYAPYI 73 (190)
T ss_pred HHHHHHHHhcCCCEEEEECCCC---------------CHHHHhhCCCCEEEECCCCCChHH---CcchHHHH-HHhcCCC
Confidence 4578888888988887655432 122222246899999999754433 22233333 3567899
Q ss_pred EEEEEchHHHHHHHc
Q 015523 317 IYGAVCSSPIVLHKH 331 (405)
Q Consensus 317 ~i~aic~g~~~La~a 331 (405)
||.+||-|..+|+.+
T Consensus 74 PiLGIClG~Qlla~~ 88 (190)
T CHL00101 74 PILGVCLGHQSIGYL 88 (190)
T ss_pred cEEEEchhHHHHHHH
Confidence 999999999999885
No 168
>PRK07567 glutamine amidotransferase; Provisional
Probab=96.35 E-value=0.015 Score=53.17 Aligned_cols=96 Identities=11% Similarity=0.070 Sum_probs=53.1
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHhcCCE---EEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523 18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQ---VTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 94 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~---v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~ 94 (405)
++|+|+-.............++|++.+.. ++++....+ . .. ..+..+||.+||.||..+...
T Consensus 2 ~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~------~~~~~~~dgvIi~Gg~~~~~d 66 (242)
T PRK07567 2 KPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDRE--------P-LP------DLDLDDYSGVIVGGSPFNVSD 66 (242)
T ss_pred CcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccC--------C-CC------CCCHhhccEEEEcCCCCcCCC
Confidence 45766655544332236667777776644 444433222 0 00 112247999999999422211
Q ss_pred c--ccCh-------HHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 95 L--RDCE-------ILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 95 ~--~~~~-------~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
. ...+ .+.++++.+.+.++||.+||-|.. +|+.+
T Consensus 67 ~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Q-lla~a 109 (242)
T PRK07567 67 PAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVG-TLGHH 109 (242)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHH-HHHHH
Confidence 1 0111 223455555589999999999766 67765
No 169
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=96.34 E-value=0.029 Score=49.44 Aligned_cols=89 Identities=20% Similarity=0.141 Sum_probs=57.2
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhcCC-EEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcccc
Q 015523 19 NVLVPVGFGTEEMEAVIIVDVLRRAGA-QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD 97 (405)
Q Consensus 19 ki~ill~~g~~~~e~~~~~~~l~~~~~-~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~ 97 (405)
+|.|+=+.+ .-...+...++..++ ..+++..+.. ....+...+|++||.|| +.+....+
T Consensus 3 ~ilIld~g~---q~~~li~r~~re~g~v~~e~~~~~~~----------------~~~~~~~~~~giIlsGg-p~sv~~~~ 62 (198)
T COG0518 3 KILILDFGG---QYLGLIARRLRELGYVYSEIVPYTGD----------------AEELPLDSPDGIIISGG-PMSVYDED 62 (198)
T ss_pred EEEEEeCCC---cHhHHHHHHHHHcCCceEEEEeCCCC----------------cccccccCCCEEEEcCC-CCCCcccc
Confidence 455554443 333445677777784 4444443332 12333335699999999 44433334
Q ss_pred --ChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 98 --CEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 98 --~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
.+...++|++....+++|.+||.|-. +||.
T Consensus 63 ~w~~~~~~~i~~~~~p~~pvLGIC~G~Q-l~A~ 94 (198)
T COG0518 63 PWLPREKDLIKDAGVPGKPVLGICLGHQ-LLAK 94 (198)
T ss_pred ccchhHHHHHHHhCCCCCCEEEEChhHH-HHHH
Confidence 57888999999999999999999766 5664
No 170
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=96.33 E-value=0.016 Score=51.96 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCC
Q 015523 34 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKR 113 (405)
Q Consensus 34 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (405)
....+.|++.|+++.++..+.. .. ++ ..+. ..+||+|||.||...+ .+....+++++++.++++
T Consensus 14 ~~~~~~l~~~G~~~~~~~~~~~-~~---------~~--~~~~-~~~~dgliisGGp~~~---~~~~~~~~~i~~~~~~~~ 77 (214)
T PRK07765 14 FNLVQYLGQLGVEAEVWRNDDP-RL---------AD--EAAV-AAQFDGVLLSPGPGTP---ERAGASIDMVRACAAAGT 77 (214)
T ss_pred HHHHHHHHHcCCcEEEEECCCc-CH---------HH--HHHh-hcCCCEEEECCCCCCh---hhcchHHHHHHHHHhCCC
Confidence 4567888999999999876642 00 11 1111 1259999999994222 233456789999999999
Q ss_pred EEEEEccchHHhhhh
Q 015523 114 LYGAICAAPAVTLLP 128 (405)
Q Consensus 114 ~i~aic~g~~~~La~ 128 (405)
||.+||-|.. +|+.
T Consensus 78 PiLGIC~G~Q-lla~ 91 (214)
T PRK07765 78 PLLGVCLGHQ-AIGV 91 (214)
T ss_pred CEEEEccCHH-HHHH
Confidence 9999999866 4554
No 171
>PRK05637 anthranilate synthase component II; Provisional
Probab=96.31 E-value=0.019 Score=51.18 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=58.0
Q ss_pred cCEEEEEeC-CCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523 220 MPRVLIPIA-NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 298 (405)
Q Consensus 220 ~~~V~il~~-~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~ 298 (405)
|+||+++=+ |+|. ..+.+.|++.|+.++++..+. .++++....+|.||+-||......
T Consensus 1 ~~~il~iD~~dsf~----~nl~~~l~~~g~~~~v~~~~~----------------~~~~l~~~~~~~iIlsgGPg~~~d- 59 (208)
T PRK05637 1 MTHVVLIDNHDSFV----YNLVDAFAVAGYKCTVFRNTV----------------PVEEILAANPDLICLSPGPGHPRD- 59 (208)
T ss_pred CCEEEEEECCcCHH----HHHHHHHHHCCCcEEEEeCCC----------------CHHHHHhcCCCEEEEeCCCCCHHH-
Confidence 456666633 3332 347788888999998886543 122222246899999887655433
Q ss_pred hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.....++++.+. .++||.+||-|..+|+.+
T Consensus 60 --~~~~~~li~~~~-~~~PiLGIClG~Qlla~a 89 (208)
T PRK05637 60 --AGNMMALIDRTL-GQIPLLGICLGFQALLEH 89 (208)
T ss_pred --hhHHHHHHHHHh-CCCCEEEEcHHHHHHHHH
Confidence 223456665443 579999999999999886
No 172
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=96.24 E-value=0.0074 Score=52.97 Aligned_cols=78 Identities=23% Similarity=0.282 Sum_probs=58.6
Q ss_pred HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCC
Q 015523 237 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGR 316 (405)
Q Consensus 237 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k 316 (405)
..+...|++.+.+++++..+.. ... ..+ +..+||.++|+||...... .+..+++++++...++
T Consensus 11 ~~l~~~l~~~~~~~~v~~~~~~-~~~-----------~~~--~~~~~d~iii~Gg~~~~~d---~~~~~~~i~~~~~~~~ 73 (192)
T PF00117_consen 11 HSLVRALRELGIDVEVVRVDSD-FEE-----------PLE--DLDDYDGIIISGGPGSPYD---IEGLIELIREARERKI 73 (192)
T ss_dssp HHHHHHHHHTTEEEEEEETTGG-HHH-----------HHH--HTTTSSEEEEECESSSTTS---HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCeEEEEECCCc-hhh-----------hhh--hhcCCCEEEECCcCCcccc---ccccccccccccccce
Confidence 4567888888988888876642 000 011 1378999999999754332 5788888998889999
Q ss_pred EEEEEchHHHHHHHc
Q 015523 317 IYGAVCSSPIVLHKH 331 (405)
Q Consensus 317 ~i~aic~g~~~La~a 331 (405)
++.+||-|..+|+.+
T Consensus 74 PilGIC~G~Q~la~~ 88 (192)
T PF00117_consen 74 PILGICLGHQILAHA 88 (192)
T ss_dssp EEEEETHHHHHHHHH
T ss_pred EEEEEeehhhhhHHh
Confidence 999999999999876
No 173
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=96.24 E-value=0.0074 Score=52.95 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=54.4
Q ss_pred HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh--------------hhcCh
Q 015523 237 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER--------------LQKSR 302 (405)
Q Consensus 237 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~--------------~~~~~ 302 (405)
......|+..|+.+.++..... . ..+.+ ....+|.|++|||...... ...+.
T Consensus 22 ~~~~~~l~~~G~~~~iv~~~~~-~------------~~~~~-~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~ 87 (189)
T cd01745 22 QYYVDAVRKAGGLPVLLPPVDD-E------------EDLEQ-YLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDA 87 (189)
T ss_pred HHHHHHHHHCCCEEEEeCCCCC-h------------HHHHH-HHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHH
Confidence 3567788888888777754432 0 01111 1156899999999632111 11223
Q ss_pred HHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 303 ILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 303 ~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
...++++.+.+.+++|.+||.|..+|+.+
T Consensus 88 ~~~~~~~~~~~~~~PilgiC~G~Q~l~~~ 116 (189)
T cd01745 88 FELALLRAALERGKPILGICRGMQLLNVA 116 (189)
T ss_pred HHHHHHHHHHHCCCCEEEEcchHHHHHHH
Confidence 55889999999999999999999998875
No 174
>PRK00758 GMP synthase subunit A; Validated
Probab=96.24 E-value=0.014 Score=50.87 Aligned_cols=68 Identities=22% Similarity=0.292 Sum_probs=46.8
Q ss_pred HHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCc-cEEEEcCCccchHhhhcChHHHHHHHHHhhcCCE
Q 015523 239 IVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVY-DLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI 317 (405)
Q Consensus 239 ~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~-D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~ 317 (405)
+.+.|++.|+++.++..+. ..+++ .++ |++++|||. +.. ....+.++++ +.++|
T Consensus 15 i~~~l~~~g~~~~~~~~~~----------------~~~~l--~~~~dgivi~Gg~-~~~---~~~~~~~~l~---~~~~P 69 (184)
T PRK00758 15 IHRTLRYLGVDAKIIPNTT----------------PVEEI--KAFEDGLILSGGP-DIE---RAGNCPEYLK---ELDVP 69 (184)
T ss_pred HHHHHHHcCCcEEEEECCC----------------CHHHH--hhcCCEEEECCCC-Chh---hccccHHHHH---hCCCC
Confidence 4677788888877665332 12333 445 999999995 322 2234556665 45899
Q ss_pred EEEEchHHHHHHHc
Q 015523 318 YGAVCSSPIVLHKH 331 (405)
Q Consensus 318 i~aic~g~~~La~a 331 (405)
|.+||.|..+|+.+
T Consensus 70 ilGIC~G~Q~L~~a 83 (184)
T PRK00758 70 ILGICLGHQLIAKA 83 (184)
T ss_pred EEEEeHHHHHHHHh
Confidence 99999999999886
No 175
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=96.16 E-value=0.034 Score=53.99 Aligned_cols=88 Identities=15% Similarity=0.114 Sum_probs=62.8
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 299 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~ 299 (405)
.+||+++=+ |+- ..+...|.+.|+++.++..+. +.+++...++|.|+++||.+++..
T Consensus 192 ~~~I~viD~-g~k----~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~~dgIilSgGPg~p~~-- 248 (382)
T CHL00197 192 QLKIIVIDF-GVK----YNILRRLKSFGCSITVVPATS----------------PYQDILSYQPDGILLSNGPGDPSA-- 248 (382)
T ss_pred CCEEEEEEC-CcH----HHHHHHHHHCCCeEEEEcCCC----------------CHHHHhccCCCEEEEcCCCCChhH--
Confidence 367777755 544 248888889999998884332 123333346899999999754432
Q ss_pred cChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
....++.++++.+.+.||.+||-|-.+|+.+
T Consensus 249 -~~~~i~~i~~~~~~~~PilGIClGhQlLa~a 279 (382)
T CHL00197 249 -IHYGIKTVKKLLKYNIPIFGICMGHQILSLA 279 (382)
T ss_pred -HHHHHHHHHHHHhCCCCEEEEcHHHHHHHHH
Confidence 3456777787777789999999999999865
No 176
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=96.14 E-value=0.015 Score=57.58 Aligned_cols=86 Identities=22% Similarity=0.173 Sum_probs=57.9
Q ss_pred cEEEEEecC--CCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh--h
Q 015523 18 LNVLVPVGF--GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS--V 93 (405)
Q Consensus 18 ~ki~ill~~--g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~--~ 93 (405)
.||+|--=. .|.-.| -++.|+++ +++..+||-.+ +.++ ++|+|++|||++.. .
T Consensus 234 ~~iavA~D~AF~FyY~e---nl~~L~~~-aelv~fSPl~~-----------------~~lp--~~D~l~lpGG~~e~~~~ 290 (433)
T PRK13896 234 PTVAVARDAAFCFRYPA---TIERLRER-ADVVTFSPVAG-----------------DPLP--DCDGVYLPGGYPELHAD 290 (433)
T ss_pred CeEEEEEcCccceeCHH---HHHHHHhc-CcEEEEcCCCC-----------------CCCC--CCCEEEeCCCchhhHHH
Confidence 578876522 222223 25677777 88888887543 1233 68999999997432 2
Q ss_pred ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 94 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
.+..+... +.|+++.++|++|.++|.| ..+|++
T Consensus 291 ~L~~n~~~-~~i~~~~~~G~pi~aeCGG-~q~L~~ 323 (433)
T PRK13896 291 ALADSPAL-DELADRAADGLPVLGECGG-LMALAE 323 (433)
T ss_pred HHHhCCcH-HHHHHHHHCCCcEEEEehH-HHHhhc
Confidence 23344444 8899999999999999995 546775
No 177
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=96.14 E-value=0.023 Score=50.03 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=57.3
Q ss_pred EeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHH
Q 015523 226 PIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILK 305 (405)
Q Consensus 226 l~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~ 305 (405)
++.|..+... ..+.+.|++.++++.++..+.. .++++...++|.||+-||...+.. .....
T Consensus 3 l~idn~dsft-~nl~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iIlsgGP~~p~~---~~~~~ 63 (195)
T PRK07649 3 LMIDNYDSFT-FNLVQFLGELGQELVVKRNDEV---------------TISDIENMKPDFLMISPGPCSPNE---AGISM 63 (195)
T ss_pred EEEeCCCccH-HHHHHHHHHCCCcEEEEeCCCC---------------CHHHHhhCCCCEEEECCCCCChHh---CCCch
Confidence 4444443333 3478889999999988875532 122222246899999999755443 23355
Q ss_pred HHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 306 KLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 306 ~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
+.++. +..++||.+||-|..+|+.+
T Consensus 64 ~~i~~-~~~~~PvLGIClG~Qlla~~ 88 (195)
T PRK07649 64 EVIRY-FAGKIPIFGVCLGHQSIAQV 88 (195)
T ss_pred HHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 56664 35789999999999999886
No 178
>PLN02335 anthranilate synthase
Probab=96.12 E-value=0.026 Score=50.83 Aligned_cols=90 Identities=8% Similarity=0.027 Sum_probs=59.4
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 299 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~ 299 (405)
.++|+|+ |..+ .-...+.+.|++.|+.++++..+.. .++++...++|+||+-||...+..
T Consensus 18 ~~~ilvi--D~~d-sft~~i~~~L~~~g~~~~v~~~~~~---------------~~~~~~~~~~d~iVisgGPg~p~d-- 77 (222)
T PLN02335 18 NGPIIVI--DNYD-SFTYNLCQYMGELGCHFEVYRNDEL---------------TVEELKRKNPRGVLISPGPGTPQD-- 77 (222)
T ss_pred cCcEEEE--ECCC-CHHHHHHHHHHHCCCcEEEEECCCC---------------CHHHHHhcCCCEEEEcCCCCChhh--
Confidence 4677777 4322 2234588889999999999855421 122222246899999999755443
Q ss_pred cChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.....+++++ ....+||.+||-|..+|+.+
T Consensus 78 -~~~~~~~~~~-~~~~~PiLGIClG~QlLa~a 107 (222)
T PLN02335 78 -SGISLQTVLE-LGPLVPLFGVCMGLQCIGEA 107 (222)
T ss_pred -ccchHHHHHH-hCCCCCEEEecHHHHHHHHH
Confidence 2234566653 45679999999999999875
No 179
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=96.08 E-value=0.016 Score=50.79 Aligned_cols=79 Identities=19% Similarity=0.122 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHH
Q 015523 30 EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQA 109 (405)
Q Consensus 30 ~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~ 109 (405)
..-...+.+.|++.|++++++..+.. .++....++|.||+|||. ... .+.....++++..
T Consensus 8 ~~~~~~l~~~l~~~g~~~~~~~~~~~----------------~~~~~~~~~~glii~Gg~-~~~---~~~~~~~~i~~~~ 67 (188)
T TIGR00888 8 SQYTQLIARRLRELGVYSELVPNTTP----------------LEEIREKNPKGIILSGGP-SSV---YAENAPRADEKIF 67 (188)
T ss_pred chHHHHHHHHHHHcCCEEEEEeCCCC----------------HHHHhhcCCCEEEECCCC-CCc---CcCCchHHHHHHH
Confidence 34445667888888999988865431 111211246799999994 222 1223467888889
Q ss_pred HcCCEEEEEccchHHhhhhc
Q 015523 110 EEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 110 ~~~~~i~aic~g~~~~La~a 129 (405)
+.++||.+||.|-. +|+.+
T Consensus 68 ~~~~PilGIC~G~Q-ll~~~ 86 (188)
T TIGR00888 68 ELGVPVLGICYGMQ-LMAKQ 86 (188)
T ss_pred hCCCCEEEECHHHH-HHHHh
Confidence 99999999999766 57754
No 180
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.07 E-value=0.033 Score=56.66 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=59.3
Q ss_pred CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc-
Q 015523 16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR- 94 (405)
Q Consensus 16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~- 94 (405)
..++|+|+=|-.=+..+ ..+.|++.++++.++.. . .++ .++|.||+||+......
T Consensus 5 ~~~~i~iiDyG~GN~~s---l~~al~~~G~~v~~v~~-~------------------~~l--~~~D~lIlpG~gs~~~~m 60 (538)
T PLN02617 5 ADSEVTLLDYGAGNVRS---VRNAIRHLGFTIKDVQT-P------------------EDI--LNADRLIFPGVGAFGSAM 60 (538)
T ss_pred CCCeEEEEECCCCCHHH---HHHHHHHCCCeEEEECC-h------------------hhh--ccCCEEEECCCCCHHHHH
Confidence 45688877655444444 47777888888866632 1 123 36999999996321111
Q ss_pred -cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 95 -LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 95 -~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
......+.+.|+++.+.++|+.+||.|.. +|++.
T Consensus 61 ~~L~~~gl~~~i~~~i~~g~PvLGIC~G~Q-lLa~~ 95 (538)
T PLN02617 61 DVLNNRGMAEALREYIQNDRPFLGICLGLQ-LLFES 95 (538)
T ss_pred HHHHHcCHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence 11233477889999999999999999755 78864
No 181
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=96.06 E-value=0.013 Score=51.22 Aligned_cols=86 Identities=8% Similarity=0.057 Sum_probs=56.1
Q ss_pred EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHH
Q 015523 22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL 101 (405)
Q Consensus 22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~ 101 (405)
||+.|+++... ..+.+.|++.++++.++..+.. + ++++...+||.||+-||...+. +....
T Consensus 2 il~idn~Dsft-~nl~~~l~~~g~~v~v~~~~~~-~--------------~~~~~~~~~d~iils~GPg~p~---~~~~~ 62 (187)
T PRK08007 2 ILLIDNYDSFT-WNLYQYFCELGADVLVKRNDAL-T--------------LADIDALKPQKIVISPGPCTPD---EAGIS 62 (187)
T ss_pred EEEEECCCccH-HHHHHHHHHCCCcEEEEeCCCC-C--------------HHHHHhcCCCEEEEcCCCCChH---HCCcc
Confidence 56666666555 3467788888999988865532 1 1122212589999999843333 33445
Q ss_pred HHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 102 KKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 102 ~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
++.++. +..++||.+||-|-. +|+.
T Consensus 63 ~~~~~~-~~~~~PiLGIClG~Q-~la~ 87 (187)
T PRK08007 63 LDVIRH-YAGRLPILGVCLGHQ-AMAQ 87 (187)
T ss_pred HHHHHH-hcCCCCEEEECHHHH-HHHH
Confidence 566665 678899999999765 5665
No 182
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=96.06 E-value=0.011 Score=52.25 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc---cccChHHHHHHHH
Q 015523 31 MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR---LRDCEILKKITSK 107 (405)
Q Consensus 31 ~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~---~~~~~~~~~~l~~ 107 (405)
..+..+.+.|+..+.+++++..+. ++ .++|.||+||+...... +.... +..++++
T Consensus 9 gn~~~l~~~l~~~g~~v~v~~~~~-------------------~l--~~~d~lii~G~~~~~~~~~~l~~~~-~~~l~~~ 66 (196)
T TIGR01855 9 GNLGSVKRALKRVGAEPVVVKDSK-------------------EA--ELADKLILPGVGAFGAAMARLRENG-LDLFVEL 66 (196)
T ss_pred cHHHHHHHHHHHCCCcEEEEcCHH-------------------Hh--ccCCEEEECCCCCHHHHHHHHHHcC-cHHHHHH
Confidence 456677888888888888876221 12 25899999995211111 11112 3444477
Q ss_pred HHHcCCEEEEEccchHHhhhhc
Q 015523 108 QAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 108 ~~~~~~~i~aic~g~~~~La~a 129 (405)
+++.++||.++|.|.. +|+++
T Consensus 67 ~~~~~~pvlGiC~G~Q-ll~~~ 87 (196)
T TIGR01855 67 VVRLGKPVLGICLGMQ-LLFER 87 (196)
T ss_pred HHhCCCCEEEECHHHH-Hhhhc
Confidence 8899999999999755 78887
No 183
>PRK13566 anthranilate synthase; Provisional
Probab=96.05 E-value=0.072 Score=56.22 Aligned_cols=91 Identities=14% Similarity=0.130 Sum_probs=66.6
Q ss_pred CCcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523 218 DRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 297 (405)
Q Consensus 218 ~~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~ 297 (405)
...+||+|+=+.. .-...+.+.|+..|+++.++..+.. ...++ ..++|.||+-||.+...
T Consensus 524 ~~g~~IlvID~~d---sf~~~l~~~Lr~~G~~v~vv~~~~~-------------~~~~~---~~~~DgVVLsgGpgsp~- 583 (720)
T PRK13566 524 GEGKRVLLVDHED---SFVHTLANYFRQTGAEVTTVRYGFA-------------EEMLD---RVNPDLVVLSPGPGRPS- 583 (720)
T ss_pred CCCCEEEEEECCC---chHHHHHHHHHHCCCEEEEEECCCC-------------hhHhh---hcCCCEEEECCCCCChh-
Confidence 3457887776653 3356788999999999998877642 11111 14689999877654332
Q ss_pred hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
+..+.+++++..++++||.+||-|..+|+.+
T Consensus 584 ---d~~~~~lI~~a~~~~iPILGIClG~QlLa~a 614 (720)
T PRK13566 584 ---DFDCKATIDAALARNLPIFGVCLGLQAIVEA 614 (720)
T ss_pred ---hCCcHHHHHHHHHCCCcEEEEehhHHHHHHH
Confidence 3347899999999999999999999999876
No 184
>PLN02327 CTP synthase
Probab=95.98 E-value=0.03 Score=56.39 Aligned_cols=233 Identities=13% Similarity=0.046 Sum_probs=121.4
Q ss_pred CcccEEEE-cCCchhhhccccChHHHHHHHHHHHc-CC-EEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-----
Q 015523 78 QVFDLIAL-PGGMPGSVRLRDCEILKKITSKQAEE-KR-LYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT----- 149 (405)
Q Consensus 78 ~~~d~lii-pgg~~~~~~~~~~~~~~~~l~~~~~~-~~-~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~----- 149 (405)
.++|++|+ .||. ..+ .++.++++.+|++..+ ++ -++.+-..-..+|..+|=++-|. |=|- ...|++
T Consensus 138 ~~~dv~i~EiGGT--VGD-iEs~pflEA~rQ~~~~~g~~n~~~iHvt~vp~l~~~gE~KTKP-tQhs--vk~Lr~~Gi~p 211 (557)
T PLN02327 138 GPADVCVIELGGT--VGD-IESMPFIEALRQFSFRVGPGNFCLIHVSLVPVLGVVGEQKTKP-TQHS--VRGLRALGLTP 211 (557)
T ss_pred CCCCEEEEEeCce--eec-ccccHHHHHHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCc-hHHH--HHHHHhCCCCC
Confidence 36899998 4663 222 2456777777776543 22 22222221233455566554433 1121 112222
Q ss_pred --------Ccccc----C----cEEEeCCeEcCCCcccHHHHHHHHHHHhcChHHHHHHHHhccccc---ccCccccccc
Q 015523 150 --------FWAVK----S----NIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHN---ADNSLKKEEF 210 (405)
Q Consensus 150 --------~~~~~----~----~~v~dg~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~---~~~~~~~~~~ 210 (405)
.+..+ + --|.-.++|.+-...+.++.=+.+-+ +.+.+.+.+.|.++. .++...|..+
T Consensus 212 d~l~~Rs~~~l~~~~~~Kia~fc~v~~~~Vi~~~d~~~iY~vPl~l~~----q~l~~~i~~~l~l~~~~~~~~~~~W~~~ 287 (557)
T PLN02327 212 HILACRSTKPLEENVKEKLSQFCHVPAENILNLHDVSNIWHVPLLLRD----QKAHEAILKVLNLLSVAREPDLEEWTAR 287 (557)
T ss_pred CEEEEecCCCCCHHHHHHHHHhcCCCHHHEEEcCCCchHhhhhHHHHH----CCcHHHHHHHcCCCCCCCCCChHHHHHH
Confidence 00000 0 02233567888777776665555544 445566777777762 2221233333
Q ss_pred cccccccCCcCEEEEEe-CCCCcHHHHHHHHHHHHhCC----CeEEEEeecCCceeecCCCcEEee---CCCccCcCCCC
Q 015523 211 NEVEWFFDRMPRVLIPI-ANGSEEIEIVTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIA---DKSISDAAESV 282 (405)
Q Consensus 211 ~~~~~~~~~~~~V~il~-~~g~~~~e~~~~~~~l~~~~----~~v~~vs~~~~~~v~~~~g~~v~~---~~~l~~~~~~~ 282 (405)
-..........+|+++- |....+. ...+.+.|..++ .++++...+.. .+.. .+..-.| +...+.+ .+
T Consensus 288 ~~~~~~~~~~v~IalVGKY~~l~DA-Y~Si~eAL~hA~~~~~~~v~i~wI~se-~l~~-~~~~~~~~~y~~~~~~L--~~ 362 (557)
T PLN02327 288 AESCDNLTEPVRIAMVGKYTGLSDS-YLSVLKALLHASVACSRKLVIDWVAAS-DLED-ETAKETPDAYAAAWKLL--KG 362 (557)
T ss_pred HHHHhCCCCceEEEEEecccCCcHh-HHHHHHHHHHHHHHcCCeeEEEEEchh-hcCC-cccccccchhhhhHHhh--cc
Confidence 22111223356777775 3344443 566777777764 56666555543 2211 1100001 0111223 78
Q ss_pred ccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHH
Q 015523 283 YDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH 329 (405)
Q Consensus 283 ~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La 329 (405)
+|.|++|||.+. . .....+..++.+..+++|+.+||.|..+++
T Consensus 363 ~DGIvvpGGfG~-~---~~~G~i~ai~~are~~iP~LGIClGmQl~v 405 (557)
T PLN02327 363 ADGILVPGGFGD-R---GVEGKILAAKYARENKVPYLGICLGMQIAV 405 (557)
T ss_pred CCEEEeCCCCCC-c---ccccHHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence 999999999743 2 223445667778889999999999999774
No 185
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=95.91 E-value=0.038 Score=55.46 Aligned_cols=224 Identities=13% Similarity=0.071 Sum_probs=120.8
Q ss_pred cccEEEE-cCCchhhhccccChHHHHHHHHHHHc-CC-EEEEEccchHHhhhhcCCCCCcceeeccCccccCCC------
Q 015523 79 VFDLIAL-PGGMPGSVRLRDCEILKKITSKQAEE-KR-LYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT------ 149 (405)
Q Consensus 79 ~~d~lii-pgg~~~~~~~~~~~~~~~~l~~~~~~-~~-~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~------ 149 (405)
++|++|+ .||. ..+ .++.++++.+|++..+ ++ -++.+-..-..+|..+|=++-|. |=|- ...|++
T Consensus 133 ~~d~~i~EiGGT--vGD-iEs~pf~ea~rq~~~~~g~~~~~~ih~t~vp~l~~~~e~KtKP-tQhs--v~~lr~~Gi~pd 206 (525)
T TIGR00337 133 GPDVVIVEIGGT--VGD-IESLPFLEAIRQFRNEVGRENVAFIHVTLVPYIAAAGEQKTKP-TQHS--VKELRSLGIQPD 206 (525)
T ss_pred CCCEEEEEeCCc--ccc-ccccHHHHHHHHHHHhhCcCcEEEEEEeeeeeecCCCcccCCc-hHHH--HHHHHhCCCCCC
Confidence 6899888 4663 222 2456777778776543 22 23333221233455566554433 1121 111221
Q ss_pred -------Ccccc----C----cEEEeCCeEcCCCcccHHHHHHHHHHHhcChHHHHHHHHhccccc-ccCcccccccccc
Q 015523 150 -------FWAVK----S----NIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHN-ADNSLKKEEFNEV 213 (405)
Q Consensus 150 -------~~~~~----~----~~v~dg~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~-~~~~~~~~~~~~~ 213 (405)
.+..+ + --|...++|.+-...+.++.=+.+-+ +.+.+.+.+.|.++. .++...|..+-..
T Consensus 207 ~~~~R~~~~l~~~~~~Kia~f~~v~~~~vi~~~d~~~iY~vPl~l~~----q~~~~~i~~~l~l~~~~~~~~~W~~~~~~ 282 (525)
T TIGR00337 207 IIICRSSEPLDPSTKDKIALFCDVEEEAVINAHDVSSIYEVPLLLLK----QGLDDYLCRRLNLNCDEADLSEWEELVEK 282 (525)
T ss_pred EEEEecCCCCCHHHHHHHHhccCCCHHHEEEcCCCccHhhhhHHHHH----CChHHHHHHHhCCCCCCCcHHHHHHHHHH
Confidence 00000 0 02334578888887776666555444 455667778887764 2222233333222
Q ss_pred ccccCCcCEEEEEe-CCCCcHHHHHHHHHHHHhCCC----eEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEE
Q 015523 214 EWFFDRMPRVLIPI-ANGSEEIEIVTIVDILRRAKV----DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIIL 288 (405)
Q Consensus 214 ~~~~~~~~~V~il~-~~g~~~~e~~~~~~~l~~~~~----~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~liv 288 (405)
........+|+++- |....+ ......+.|..+++ ++.+...+.. .+... ..+.+ .++|.|++
T Consensus 283 ~~~~~~~v~IalVGKY~~~~d-aY~SI~eAL~~ag~~~~~~V~~~~i~se-~i~~~---------~~~~L--~~~dGIiL 349 (525)
T TIGR00337 283 FINPKHEVTIGIVGKYVELKD-SYLSVIEALKHAGAKLDTKVNIKWIDSE-DLEEE---------GAEFL--KGVDGILV 349 (525)
T ss_pred hhCCCCCcEEEEEeCCcCCHH-HHHHHHHHHHhCccccCCEEEEEEecHH-Hhhhh---------hhhhh--cCCCEEEe
Confidence 11122357888875 333333 35688899998885 3444433322 11110 00112 56899999
Q ss_pred cCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHH
Q 015523 289 PGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH 329 (405)
Q Consensus 289 pgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La 329 (405)
|||.+. . ..+..++.++.+..++.|+.+||-|..+++
T Consensus 350 pGG~G~-~---~~~g~i~ai~~a~e~~iP~LGIClG~Qll~ 386 (525)
T TIGR00337 350 PGGFGE-R---GVEGKILAIKYARENNIPFLGICLGMQLAV 386 (525)
T ss_pred CCCCCC-h---hhcChHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence 999743 2 233455677878889999999999998774
No 186
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=95.91 E-value=0.017 Score=50.73 Aligned_cols=87 Identities=8% Similarity=0.059 Sum_probs=55.6
Q ss_pred EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHH
Q 015523 22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL 101 (405)
Q Consensus 22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~ 101 (405)
||+.|+.+... ..+++.|++.+++++++..+.. .++++...++|.||+-||...+. +....
T Consensus 2 il~id~~dsf~-~nl~~~l~~~~~~~~v~~~~~~---------------~~~~~~~~~~~~iilsgGP~~~~---~~~~~ 62 (191)
T PRK06774 2 LLLIDNYDSFT-YNLYQYFCELGTEVMVKRNDEL---------------QLTDIEQLAPSHLVISPGPCTPN---EAGIS 62 (191)
T ss_pred EEEEECCCchH-HHHHHHHHHCCCcEEEEeCCCC---------------CHHHHHhcCCCeEEEcCCCCChH---hCCCc
Confidence 45555555443 4567888888999998875532 11122222589999999943332 23334
Q ss_pred HHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 102 KKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 102 ~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
..+++ .++.++||.+||-|-. +|+.+
T Consensus 63 ~~~i~-~~~~~~PiLGIC~G~Q-lla~~ 88 (191)
T PRK06774 63 LAVIR-HFADKLPILGVCLGHQ-ALGQA 88 (191)
T ss_pred hHHHH-HhcCCCCEEEECHHHH-HHHHH
Confidence 55565 4678999999999766 57764
No 187
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=95.90 E-value=0.048 Score=52.58 Aligned_cols=86 Identities=15% Similarity=0.129 Sum_probs=60.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 300 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~ 300 (405)
++|+++=+ |+- ......|.+.|+.+.++-.+. +++++....+|.|+++||..++. .
T Consensus 174 ~~i~viD~-G~k----~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~pDGIiLSgGPgdp~---~ 229 (358)
T TIGR01368 174 KRVVVIDF-GVK----QNILRRLVKRGCEVTVVPYDT----------------DAEEIKKYNPDGIFLSNGPGDPA---A 229 (358)
T ss_pred cEEEEEeC-CcH----HHHHHHHHHCCCEEEEEcCCC----------------CHHHHHhhCCCEEEECCCCCCHH---H
Confidence 46776644 544 257888888999988774332 12333223469999999965443 3
Q ss_pred ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
....+++++++.+ ++||.+||-|..+|+.+
T Consensus 230 ~~~~i~~i~~~~~-~~PILGIClG~QlLa~a 259 (358)
T TIGR01368 230 VEPAIETIRKLLE-KIPIFGICLGHQLLALA 259 (358)
T ss_pred HHHHHHHHHHHHc-CCCEEEECHHHHHHHHH
Confidence 4567888888887 99999999999999875
No 188
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=95.86 E-value=0.048 Score=52.52 Aligned_cols=92 Identities=24% Similarity=0.226 Sum_probs=64.4
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHhc---CCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523 18 LNVLVPVGFGTEEMEAVIIVDVLRRA---GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 94 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~~~~~~l~~~---~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~ 94 (405)
|+|+|+--+|.....+...++.|++. .|.|..++.+. +. . ..+. .+++++|+|||. ....
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~---l~--------~-~pw~----~~~~LlV~PGG~-d~~y 63 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADE---LL--------N-EPWQ----SKCALLVMPGGA-DLPY 63 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHH---hh--------c-Cccc----cCCcEEEECCCc-chHH
Confidence 57889989999999999999999863 46676665432 11 1 1111 258999999994 3322
Q ss_pred cc-cChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 95 LR-DCEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 95 ~~-~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
.. -++.-.+.||++.++|+-..++|.| ++ ++.
T Consensus 64 ~~~l~~~g~~~Ir~fV~~GG~YlGiCAG-aY-~as 96 (367)
T PF09825_consen 64 CRSLNGEGNRRIRQFVENGGGYLGICAG-AY-YAS 96 (367)
T ss_pred HHhhChHHHHHHHHHHHcCCcEEEECcc-hh-hhc
Confidence 22 2455578899999999999999996 53 554
No 189
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=95.83 E-value=0.022 Score=50.12 Aligned_cols=86 Identities=10% Similarity=0.063 Sum_probs=56.0
Q ss_pred EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHH
Q 015523 22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL 101 (405)
Q Consensus 22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~ 101 (405)
||+-|+++... ....+.|++.|+.++++..+.. .. . .+.+. ++|.+++-||..++. ++...
T Consensus 2 il~id~~dsft-~~~~~~l~~~g~~~~~~~~~~~-~~--------~---~~~~~---~~~~iilsgGp~~~~---~~~~~ 62 (193)
T PRK08857 2 LLMIDNYDSFT-YNLYQYFCELGAQVKVVRNDEI-DI--------D---GIEAL---NPTHLVISPGPCTPN---EAGIS 62 (193)
T ss_pred EEEEECCCCcH-HHHHHHHHHCCCcEEEEECCCC-CH--------H---HHhhC---CCCEEEEeCCCCChH---HCcch
Confidence 45556555544 3478889999999999976643 10 0 01222 478999988832232 23344
Q ss_pred HHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 102 KKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 102 ~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
.+++++ ++.+.||.+||-|.. +|+.
T Consensus 63 ~~~i~~-~~~~~PiLGIClG~Q-lia~ 87 (193)
T PRK08857 63 LQAIEH-FAGKLPILGVCLGHQ-AIAQ 87 (193)
T ss_pred HHHHHH-hcCCCCEEEEcHHHH-HHHH
Confidence 567765 678999999999766 5665
No 190
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.82 E-value=0.019 Score=50.78 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc--ccChHHHHHHHHHHH
Q 015523 33 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL--RDCEILKKITSKQAE 110 (405)
Q Consensus 33 ~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~--~~~~~~~~~l~~~~~ 110 (405)
+..+...|++.+++++++... +++. ++|.||+||+....... .....+.++|+++.+
T Consensus 12 ~~~~~~~l~~~g~~v~~~~~~-------------------~~l~--~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~ 70 (199)
T PRK13181 12 LRSVANALKRLGVEAVVSSDP-------------------EEIA--GADKVILPGVGAFGQAMRSLRESGLDEALKEHVE 70 (199)
T ss_pred HHHHHHHHHHCCCcEEEEcCh-------------------HHhc--cCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHH
Confidence 344566888888888877211 1232 58999999962111111 122356788999999
Q ss_pred cCCEEEEEccchHHhhhhc
Q 015523 111 EKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 111 ~~~~i~aic~g~~~~La~a 129 (405)
.++||.++|.|-. +|+.+
T Consensus 71 ~~~PvlGiC~G~Q-ll~~~ 88 (199)
T PRK13181 71 KKQPVLGICLGMQ-LLFES 88 (199)
T ss_pred CCCCEEEECHhHH-Hhhhh
Confidence 9999999999655 68875
No 191
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.79 E-value=0.024 Score=50.20 Aligned_cols=84 Identities=17% Similarity=0.159 Sum_probs=51.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh---hh
Q 015523 223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER---LQ 299 (405)
Q Consensus 223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~---~~ 299 (405)
|+|+=|-.-+... +.+.|++.++++.++... +++ .++|.||+||+...... +.
T Consensus 2 i~iid~g~~n~~~---v~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~lilPG~g~~~~~~~~l~ 57 (201)
T PRK13152 2 IALIDYKAGNLNS---VAKAFEKIGAINFIAKNP-------------------KDL--QKADKLLLPGVGSFKEAMKNLK 57 (201)
T ss_pred EEEEECCCCcHHH---HHHHHHHCCCeEEEECCH-------------------HHH--cCCCEEEECCCCchHHHHHHHH
Confidence 4444444334444 446666677776664321 122 45899999997532221 22
Q ss_pred cChHHHHHHHHH-hhcCCEEEEEchHHHHHHHc
Q 015523 300 KSRILKKLLKEQ-KVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 300 ~~~~l~~~l~~~-~~~~k~i~aic~g~~~La~a 331 (405)
... +...|+++ .+++++|.+||.|..+|+.+
T Consensus 58 ~~~-~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~ 89 (201)
T PRK13152 58 ELG-FIEALKEQVLVQKKPILGICLGMQLFLER 89 (201)
T ss_pred HcC-cHHHHHHHHHhCCCcEEEECHhHHHHhhc
Confidence 222 34555554 58899999999999999987
No 192
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=95.79 E-value=0.051 Score=48.56 Aligned_cols=95 Identities=16% Similarity=0.100 Sum_probs=63.8
Q ss_pred CCcEEEEEecCCCchhh-HHHHHHHHHhc-CCEEEEEecCCCceeEeccCcEEecCcc-cCCCCCCcccEEEEcCCchhh
Q 015523 16 FALNVLVPVGFGTEEME-AVIIVDVLRRA-GAQVTMASVEPQLEVEASSGTRLVADTS-ISNCSHQVFDLIALPGGMPGS 92 (405)
Q Consensus 16 ~~~ki~ill~~g~~~~e-~~~~~~~l~~~-~~~v~~vs~~~~~~v~~~~g~~v~~~~~-~~~~~~~~~d~liipgg~~~~ 92 (405)
...||+++-.......+ +....+.|++. ++++..+.... +.. .+.+ ...|+|++|||. ..
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~--------------~~~~~~~l--~~ad~I~l~GG~-~~ 92 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD--------------TEDPLDAL--LEADVIYVGGGN-TF 92 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC--------------cccHHHHH--hcCCEEEECCch-HH
Confidence 35689998877654433 55677888888 88877665321 111 1223 268999999993 21
Q ss_pred ---hccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 93 ---VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 93 ---~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
..+ ....+.+.|++.++++++++++|.| +.++.+.
T Consensus 93 ~~~~~l-~~~~l~~~l~~~~~~g~~i~G~SAG-a~i~~~~ 130 (212)
T cd03146 93 NLLAQW-REHGLDAILKAALERGVVYIGWSAG-SNCWFPS 130 (212)
T ss_pred HHHHHH-HHcCHHHHHHHHHHCCCEEEEECHh-HHhhCCC
Confidence 222 2336778889889999999999996 5467764
No 193
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=95.76 E-value=0.1 Score=55.03 Aligned_cols=90 Identities=16% Similarity=0.164 Sum_probs=64.4
Q ss_pred CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523 219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 298 (405)
Q Consensus 219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~ 298 (405)
..++|+|+=+. +.-...+.+.|++.|+++.++..... +..++ ..++|.||+-||.+...
T Consensus 515 ~~~~IlVID~g---ds~~~~l~~~L~~~G~~v~vv~~~~~-------------~~~~~---~~~~DgLILsgGPGsp~-- 573 (717)
T TIGR01815 515 EGRRILLVDHE---DSFVHTLANYLRQTGASVTTLRHSHA-------------EAAFD---ERRPDLVVLSPGPGRPA-- 573 (717)
T ss_pred CCCEEEEEECC---ChhHHHHHHHHHHCCCeEEEEECCCC-------------hhhhh---hcCCCEEEEcCCCCCch--
Confidence 45788888544 23356788999999999987754421 00111 14689999966654332
Q ss_pred hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
+....++|++....++||.+||-|..+|+.+
T Consensus 574 --d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a 604 (717)
T TIGR01815 574 --DFDVAGTIDAALARGLPVFGVCLGLQGMVEA 604 (717)
T ss_pred --hcccHHHHHHHHHCCCCEEEECHHHHHHhhh
Confidence 3356788888889999999999999999886
No 194
>PRK05670 anthranilate synthase component II; Provisional
Probab=95.71 E-value=0.028 Score=49.23 Aligned_cols=87 Identities=15% Similarity=0.063 Sum_probs=55.2
Q ss_pred EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHH
Q 015523 22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL 101 (405)
Q Consensus 22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~ 101 (405)
||+.|.. ++=...+.+.|++.|++++++..+.. . ...++.. ++|.||+.||..+.. +....
T Consensus 2 iliid~~-d~f~~~i~~~l~~~g~~~~v~~~~~~-~-----------~~~~~~~---~~dglIlsgGpg~~~---d~~~~ 62 (189)
T PRK05670 2 ILLIDNY-DSFTYNLVQYLGELGAEVVVYRNDEI-T-----------LEEIEAL---NPDAIVLSPGPGTPA---EAGIS 62 (189)
T ss_pred EEEEECC-CchHHHHHHHHHHCCCcEEEEECCCC-C-----------HHHHHhC---CCCEEEEcCCCCChH---HcchH
Confidence 3444433 34446678889999999999876542 0 0011222 489999988832232 22345
Q ss_pred HHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 102 KKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 102 ~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
.+++++ ...++||.+||-|-. +|+.+
T Consensus 63 ~~~l~~-~~~~~PvLGIClG~Q-lla~a 88 (189)
T PRK05670 63 LELIRE-FAGKVPILGVCLGHQ-AIGEA 88 (189)
T ss_pred HHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence 667765 567899999999765 57654
No 195
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=95.70 E-value=0.027 Score=56.78 Aligned_cols=50 Identities=18% Similarity=0.106 Sum_probs=38.0
Q ss_pred cccEEEEcCCchhhhcc--ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 79 VFDLIALPGGMPGSVRL--RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 79 ~~d~liipgg~~~~~~~--~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
++|+|++|||.+....+ ..+..+.+.|+++.++|++|.++|.| ..+|.+.
T Consensus 284 ~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG-~q~Lg~~ 335 (475)
T TIGR00313 284 GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGG-YQMLGKE 335 (475)
T ss_pred cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHH-HHHhhhh
Confidence 68999999996333222 24556788999999999999999995 5567763
No 196
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.69 E-value=0.027 Score=49.68 Aligned_cols=83 Identities=16% Similarity=0.096 Sum_probs=49.8
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcC-Cchhhhcc-
Q 015523 18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG-GMPGSVRL- 95 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipg-g~~~~~~~- 95 (405)
|||+|+=|-.-+. ..+...|++.++++.++... +++. ++|.||+|| |.. ....
T Consensus 1 m~i~iid~g~gn~---~s~~~~l~~~g~~~~~v~~~-------------------~~~~--~~d~iIlPG~G~~-~~~~~ 55 (196)
T PRK13170 1 MNVVIIDTGCANL---SSVKFAIERLGYEPVVSRDP-------------------DVIL--AADKLFLPGVGTA-QAAMD 55 (196)
T ss_pred CeEEEEeCCCchH---HHHHHHHHHCCCeEEEECCH-------------------HHhC--CCCEEEECCCCch-HHHHH
Confidence 4677775444333 33456788888888887422 1232 479999999 431 1111
Q ss_pred -ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 96 -RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 96 -~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
.....+.+.+++ .++||.+||.|-. +|+.+
T Consensus 56 ~l~~~~l~~~i~~---~~~PilGIClG~Q-ll~~~ 86 (196)
T PRK13170 56 QLRERELIDLIKA---CTQPVLGICLGMQ-LLGER 86 (196)
T ss_pred HHHHcChHHHHHH---cCCCEEEECHHHH-HHhhh
Confidence 111234455554 4799999999655 67765
No 197
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=95.66 E-value=0.021 Score=57.57 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=40.7
Q ss_pred CCccEEEEcCCccchHhh--hcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523 281 SVYDLIILPGGVAGAERL--QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK 330 (405)
Q Consensus 281 ~~~D~livpgG~~~~~~~--~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~ 330 (405)
+++|+|++|||......+ ..+..+.+.|+++.++|++|.++|.|-.+|.+
T Consensus 283 ~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~ 334 (475)
T TIGR00313 283 TGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGK 334 (475)
T ss_pred ccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhh
Confidence 468999999997433332 24556888999999999999999999999998
No 198
>PLN02335 anthranilate synthase
Probab=95.62 E-value=0.033 Score=50.15 Aligned_cols=90 Identities=7% Similarity=-0.021 Sum_probs=56.0
Q ss_pred CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523 16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 95 (405)
Q Consensus 16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~ 95 (405)
+.+||.|+ |+. ++--..+.+.|++.|++++++..+.. + +.+.....||.|||-||...+.
T Consensus 17 ~~~~ilvi--D~~-dsft~~i~~~L~~~g~~~~v~~~~~~-~--------------~~~~~~~~~d~iVisgGPg~p~-- 76 (222)
T PLN02335 17 QNGPIIVI--DNY-DSFTYNLCQYMGELGCHFEVYRNDEL-T--------------VEELKRKNPRGVLISPGPGTPQ-- 76 (222)
T ss_pred ccCcEEEE--ECC-CCHHHHHHHHHHHCCCcEEEEECCCC-C--------------HHHHHhcCCCEEEEcCCCCChh--
Confidence 34577777 432 33335678899999999999965431 1 1111112589999999943232
Q ss_pred ccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
+.....+++++ ....+||.+||-|.. +|+.
T Consensus 77 -d~~~~~~~~~~-~~~~~PiLGIClG~Q-lLa~ 106 (222)
T PLN02335 77 -DSGISLQTVLE-LGPLVPLFGVCMGLQ-CIGE 106 (222)
T ss_pred -hccchHHHHHH-hCCCCCEEEecHHHH-HHHH
Confidence 22234555553 456799999999766 5665
No 199
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=95.50 E-value=0.038 Score=48.38 Aligned_cols=87 Identities=13% Similarity=0.061 Sum_probs=53.2
Q ss_pred EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHH
Q 015523 22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL 101 (405)
Q Consensus 22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~ 101 (405)
||+-|..+... ..+.+.|+..++++.++..+.. . +++....++|.||+-||...+. +....
T Consensus 2 il~id~~dsft-~~~~~~l~~~g~~v~v~~~~~~-~--------------~~~~~~~~~d~iilsgGpg~p~---~~~~~ 62 (188)
T TIGR00566 2 VLMIDNYDSFT-YNLVQYFCELGAEVVVKRNDSL-T--------------LQEIEALLPLLIVISPGPCTPN---EAGIS 62 (188)
T ss_pred EEEEECCcCHH-HHHHHHHHHcCCceEEEECCCC-C--------------HHHHHhcCCCEEEEcCCCCChh---hcchh
Confidence 34444444333 3456777777888887765532 1 1112212489999988832232 22334
Q ss_pred HHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 102 KKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 102 ~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
.++++++ ++++||.+||-|-. +|+.+
T Consensus 63 ~~~i~~~-~~~~PvLGIC~G~Q-ll~~~ 88 (188)
T TIGR00566 63 LEAIRHF-AGKLPILGVCLGHQ-AMGQA 88 (188)
T ss_pred HHHHHHh-ccCCCEEEECHHHH-HHHHH
Confidence 6777776 67899999999765 56653
No 200
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=95.50 E-value=0.051 Score=52.32 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=60.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 300 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~ 300 (405)
++|+++=+ |+ -....+.|.+.|+.+.++-.+. .++++....+|.|+++||..++. +
T Consensus 168 ~~V~viD~-G~----k~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~~DGIiLsgGPgdp~---~ 223 (354)
T PRK12838 168 KHVALIDF-GY----KKSILRSLSKRGCKVTVLPYDT----------------SLEEIKNLNPDGIVLSNGPGDPK---E 223 (354)
T ss_pred CEEEEECC-CH----HHHHHHHHHHCCCeEEEEECCC----------------CHHHHhhcCCCEEEEcCCCCChH---H
Confidence 56666644 43 2557788888899998885432 12222224689999999975433 2
Q ss_pred ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
....+++++++..+ +||.+||-|..+|+.+
T Consensus 224 ~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a 253 (354)
T PRK12838 224 LQPYLPEIKKLISS-YPILGICLGHQLIALA 253 (354)
T ss_pred hHHHHHHHHHHhcC-CCEEEECHHHHHHHHH
Confidence 34567888888776 9999999999999865
No 201
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=95.48 E-value=0.02 Score=50.19 Aligned_cols=78 Identities=24% Similarity=0.303 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcC
Q 015523 33 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEK 112 (405)
Q Consensus 33 ~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~ 112 (405)
...+...|++.+.+++++..+.. ... ..++ ..+||.++|+||..... +.+...++++++.+.+
T Consensus 10 ~~~l~~~l~~~~~~~~v~~~~~~-~~~-----------~~~~--~~~~d~iii~Gg~~~~~---d~~~~~~~i~~~~~~~ 72 (192)
T PF00117_consen 10 THSLVRALRELGIDVEVVRVDSD-FEE-----------PLED--LDDYDGIIISGGPGSPY---DIEGLIELIREARERK 72 (192)
T ss_dssp HHHHHHHHHHTTEEEEEEETTGG-HHH-----------HHHH--TTTSSEEEEECESSSTT---SHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCeEEEEECCCc-hhh-----------hhhh--hcCCCEEEECCcCCccc---cccccccccccccccc
Confidence 45677888889999999986642 000 0011 24799999999942222 2577888999999999
Q ss_pred CEEEEEccchHHhhhh
Q 015523 113 RLYGAICAAPAVTLLP 128 (405)
Q Consensus 113 ~~i~aic~g~~~~La~ 128 (405)
+||.+||-|-. +|+.
T Consensus 73 ~PilGIC~G~Q-~la~ 87 (192)
T PF00117_consen 73 IPILGICLGHQ-ILAH 87 (192)
T ss_dssp SEEEEETHHHH-HHHH
T ss_pred eEEEEEeehhh-hhHH
Confidence 99999999766 5664
No 202
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=95.48 E-value=0.045 Score=47.48 Aligned_cols=75 Identities=17% Similarity=0.125 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcC
Q 015523 33 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEK 112 (405)
Q Consensus 33 ~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~ 112 (405)
...+.+.|++.|+++.++..+.+ .++.+..+||.||+|||. ..........+ .+...+.+
T Consensus 11 ~~~~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgvIl~Gg~-~~~~~~~~~~~---~~~~~~~~ 70 (181)
T cd01742 11 THLIARRVRELGVYSEILPNTTP----------------LEEIKLKNPKGIILSGGP-SSVYEEDAPRV---DPEIFELG 70 (181)
T ss_pred HHHHHHHHHhcCceEEEecCCCC----------------hhhhcccCCCEEEECCCc-ccccccccchh---hHHHHhcC
Confidence 34567888888988888865432 001122369999999993 22111111233 34445569
Q ss_pred CEEEEEccchHHhhhh
Q 015523 113 RLYGAICAAPAVTLLP 128 (405)
Q Consensus 113 ~~i~aic~g~~~~La~ 128 (405)
+|+.+||.|-. +|+.
T Consensus 71 ~PilGIC~G~Q-ll~~ 85 (181)
T cd01742 71 VPVLGICYGMQ-LIAK 85 (181)
T ss_pred CCEEEEcHHHH-HHHH
Confidence 99999999766 5776
No 203
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=95.31 E-value=0.047 Score=54.69 Aligned_cols=46 Identities=22% Similarity=0.115 Sum_probs=30.9
Q ss_pred cccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 79 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 79 ~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
++|+||+|||. ....-.-...+.+.|+++ ++||.+||.| .-+|++.
T Consensus 36 ~~D~lILPGG~-~~~~~~l~~~l~~~i~~~---g~pvlGICgG-~QmLg~~ 81 (476)
T PRK06278 36 DLDGLIIPGGS-LVESGSLTDELKKEILNF---DGYIIGICSG-FQILSEK 81 (476)
T ss_pred cCCEEEECCCc-hhhcchHHHHHHHHHHHc---CCeEEEEcHH-HHhcccc
Confidence 69999999983 111100024556666655 9999999996 4478876
No 204
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.31 E-value=0.056 Score=47.33 Aligned_cols=84 Identities=13% Similarity=0.072 Sum_probs=52.8
Q ss_pred EEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc--cc
Q 015523 20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL--RD 97 (405)
Q Consensus 20 i~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~--~~ 97 (405)
|+|+=|..-+..+ ..+.|++.++++.++... +++. ++|.||+||+-...... ..
T Consensus 2 i~iidyg~gN~~s---~~~al~~~g~~~~~v~~~-------------------~~l~--~~D~lIlPG~g~~~~~~~~L~ 57 (192)
T PRK13142 2 IVIVDYGLGNISN---VKRAIEHLGYEVVVSNTS-------------------KIID--QAETIILPGVGHFKDAMSEIK 57 (192)
T ss_pred EEEEEcCCccHHH---HHHHHHHcCCCEEEEeCH-------------------HHhc--cCCEEEECCCCCHHHHHHHHH
Confidence 6777666555544 466777778777776422 1232 58999999982111111 11
Q ss_pred ChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC
Q 015523 98 CEILKKITSKQAEEKRLYGAICAAPAVTLLPWG 130 (405)
Q Consensus 98 ~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag 130 (405)
...+.+.|++ ..++|+.+||.|-. +|++..
T Consensus 58 ~~gl~~~i~~--~~g~PvlGIClGmQ-lL~~~~ 87 (192)
T PRK13142 58 RLNLNAILAK--NTDKKMIGICLGMQ-LMYEHS 87 (192)
T ss_pred HCCcHHHHHH--hCCCeEEEECHHHH-HHhhhc
Confidence 2246677776 57899999999644 677654
No 205
>CHL00101 trpG anthranilate synthase component 2
Probab=95.29 E-value=0.041 Score=48.29 Aligned_cols=86 Identities=9% Similarity=0.017 Sum_probs=53.1
Q ss_pred EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHH
Q 015523 22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL 101 (405)
Q Consensus 22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~ 101 (405)
||+.|..+... ..+.+.|++.++++.++..+.. .+.+.....+|.||+-||..... +. .+
T Consensus 2 iliid~~dsft-~~l~~~l~~~g~~~~v~~~~~~---------------~~~~~~~~~~dgiiisgGpg~~~---~~-~~ 61 (190)
T CHL00101 2 ILIIDNYDSFT-YNLVQSLGELNSDVLVCRNDEI---------------DLSKIKNLNIRHIIISPGPGHPR---DS-GI 61 (190)
T ss_pred EEEEECCCchH-HHHHHHHHhcCCCEEEEECCCC---------------CHHHHhhCCCCEEEECCCCCChH---HC-cc
Confidence 44444333332 5578888888988887765532 11112112589999999842222 22 23
Q ss_pred HHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 102 KKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 102 ~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
...+.+.++.++||.+||-|-. +|+.
T Consensus 62 ~~~i~~~~~~~~PiLGIClG~Q-lla~ 87 (190)
T CHL00101 62 SLDVISSYAPYIPILGVCLGHQ-SIGY 87 (190)
T ss_pred hHHHHHHhcCCCcEEEEchhHH-HHHH
Confidence 4445556788999999999765 5776
No 206
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=95.17 E-value=0.047 Score=48.13 Aligned_cols=87 Identities=11% Similarity=0.141 Sum_probs=54.7
Q ss_pred EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHH
Q 015523 22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL 101 (405)
Q Consensus 22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~ 101 (405)
||+-|+.+... ..+.+.|++.++++.++..+.. +. ..+++ .+||.||+-||...+. +....
T Consensus 2 il~idn~dsft-~nl~~~l~~~g~~v~v~~~~~~-~~-----------~~~~~---~~~d~iIlsgGP~~p~---~~~~~ 62 (195)
T PRK07649 2 ILMIDNYDSFT-FNLVQFLGELGQELVVKRNDEV-TI-----------SDIEN---MKPDFLMISPGPCSPN---EAGIS 62 (195)
T ss_pred EEEEeCCCccH-HHHHHHHHHCCCcEEEEeCCCC-CH-----------HHHhh---CCCCEEEECCCCCChH---hCCCc
Confidence 45555544443 4478889999999988875532 11 01122 2589999999943332 22334
Q ss_pred HHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 102 KKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 102 ~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
.+.+++ ++.++|+.+||-|.. +|+.+
T Consensus 63 ~~~i~~-~~~~~PvLGIClG~Q-lla~~ 88 (195)
T PRK07649 63 MEVIRY-FAGKIPIFGVCLGHQ-SIAQV 88 (195)
T ss_pred hHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence 555654 467899999999766 57763
No 207
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=95.17 E-value=0.08 Score=46.13 Aligned_cols=76 Identities=17% Similarity=0.133 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCC
Q 015523 34 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKR 113 (405)
Q Consensus 34 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (405)
..+.+.|++.|++++++..+.. . ..+.+. ..||++|+.||. ... .++ .....+++...+++
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~-~------------~~~~~~--~~~dgvil~gG~-~~~--~~~-~~~~~i~~~~~~~~ 72 (184)
T cd01743 12 YNLVQYLRELGAEVVVVRNDEI-T------------LEELEL--LNPDAIVISPGP-GHP--EDA-GISLEIIRALAGKV 72 (184)
T ss_pred HHHHHHHHHcCCceEEEeCCCC-C------------HHHHhh--cCCCEEEECCCC-CCc--ccc-hhHHHHHHHHhcCC
Confidence 3466888889999999987653 1 000122 369999997772 221 122 24555666677889
Q ss_pred EEEEEccchHHhhhhc
Q 015523 114 LYGAICAAPAVTLLPW 129 (405)
Q Consensus 114 ~i~aic~g~~~~La~a 129 (405)
||.+||-|-. +|+.+
T Consensus 73 PvlGIC~G~Q-lla~~ 87 (184)
T cd01743 73 PILGVCLGHQ-AIAEA 87 (184)
T ss_pred CEEEECHhHH-HHHHH
Confidence 9999999755 67764
No 208
>PRK13566 anthranilate synthase; Provisional
Probab=95.16 E-value=0.1 Score=55.13 Aligned_cols=92 Identities=14% Similarity=0.027 Sum_probs=64.4
Q ss_pred CCCCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523 14 PSFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 93 (405)
Q Consensus 14 ~~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~ 93 (405)
+..++||+|+=+.+ .-...+.+.|+..|+++.++..+... ..+.. .++|.||+-||...+.
T Consensus 523 ~~~g~~IlvID~~d---sf~~~l~~~Lr~~G~~v~vv~~~~~~-------------~~~~~---~~~DgVVLsgGpgsp~ 583 (720)
T PRK13566 523 VGEGKRVLLVDHED---SFVHTLANYFRQTGAEVTTVRYGFAE-------------EMLDR---VNPDLVVLSPGPGRPS 583 (720)
T ss_pred CCCCCEEEEEECCC---chHHHHHHHHHHCCCEEEEEECCCCh-------------hHhhh---cCCCEEEECCCCCChh
Confidence 44667887776553 44667789999999999999876430 01111 2589999976632222
Q ss_pred ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 94 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
+..+.++++++.++++||.+||-|-. +|+.+
T Consensus 584 ----d~~~~~lI~~a~~~~iPILGIClG~Q-lLa~a 614 (720)
T PRK13566 584 ----DFDCKATIDAALARNLPIFGVCLGLQ-AIVEA 614 (720)
T ss_pred ----hCCcHHHHHHHHHCCCcEEEEehhHH-HHHHH
Confidence 23577899999999999999999766 57654
No 209
>PRK06186 hypothetical protein; Validated
Probab=95.12 E-value=0.13 Score=46.21 Aligned_cols=75 Identities=15% Similarity=0.041 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhCC----CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHH
Q 015523 235 EIVTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKE 310 (405)
Q Consensus 235 e~~~~~~~l~~~~----~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~ 310 (405)
....+.+.|..++ .++++...+.. .+.. + +. ..++|.++||||.+. +.-+--+..++.
T Consensus 16 aY~Sv~eal~ha~~~~~~~~~i~wi~s~-~l~~--------~---~~--l~~~dgilvpgGfg~----rg~~Gki~ai~~ 77 (229)
T PRK06186 16 AHQAIPLALDLAAAVLGLPVDYEWLPTP-EITD--------P---ED--LAGFDGIWCVPGSPY----RNDDGALTAIRF 77 (229)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEEEchh-hcCC--------h---hh--HhhCCeeEeCCCCCc----ccHhHHHHHHHH
Confidence 3455677777664 56666655553 2211 1 12 367899999999742 345567778899
Q ss_pred HhhcCCEEEEEchHHHH
Q 015523 311 QKVAGRIYGAVCSSPIV 327 (405)
Q Consensus 311 ~~~~~k~i~aic~g~~~ 327 (405)
+..++.|+.+||-|..+
T Consensus 78 Are~~iP~LGIClGmQ~ 94 (229)
T PRK06186 78 ARENGIPFLGTCGGFQH 94 (229)
T ss_pred HHHcCCCeEeechhhHH
Confidence 99999999999999984
No 210
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=95.05 E-value=0.1 Score=55.01 Aligned_cols=92 Identities=13% Similarity=0.046 Sum_probs=62.7
Q ss_pred CCCCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523 14 PSFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 93 (405)
Q Consensus 14 ~~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~ 93 (405)
+..++||+|+=+. +.....+.+.|++.|+++.++...... ..++ ..+||.|||-||.....
T Consensus 513 ~~~~~~IlVID~g---ds~~~~l~~~L~~~G~~v~vv~~~~~~-------------~~~~---~~~~DgLILsgGPGsp~ 573 (717)
T TIGR01815 513 GGEGRRILLVDHE---DSFVHTLANYLRQTGASVTTLRHSHAE-------------AAFD---ERRPDLVVLSPGPGRPA 573 (717)
T ss_pred CCCCCEEEEEECC---ChhHHHHHHHHHHCCCeEEEEECCCCh-------------hhhh---hcCCCEEEEcCCCCCch
Confidence 3456788888544 344667889999999999888644210 0011 12589999966622222
Q ss_pred ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 94 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
+....+++++.++.++||.+||-|.. +|+.+
T Consensus 574 ----d~~~~~~I~~~~~~~iPvLGICLG~Q-lLa~a 604 (717)
T TIGR01815 574 ----DFDVAGTIDAALARGLPVFGVCLGLQ-GMVEA 604 (717)
T ss_pred ----hcccHHHHHHHHHCCCCEEEECHHHH-HHhhh
Confidence 23557789999999999999999766 67764
No 211
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=95.02 E-value=0.11 Score=50.26 Aligned_cols=87 Identities=17% Similarity=0.110 Sum_probs=58.6
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 96 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~ 96 (405)
++||+++=+ |+. ..+++.|.+.|+++.++..+.. ++++...++|.|+++||..++.
T Consensus 177 ~~~I~viD~-G~k----~nivr~L~~~G~~v~vvp~~~~----------------~~~i~~~~~DGIvLSgGPgdp~--- 232 (360)
T PRK12564 177 KYKVVAIDF-GVK----RNILRELAERGCRVTVVPATTT----------------AEEILALNPDGVFLSNGPGDPA--- 232 (360)
T ss_pred CCEEEEEeC-CcH----HHHHHHHHHCCCEEEEEeCCCC----------------HHHHHhcCCCEEEEeCCCCChH---
Confidence 356666644 322 3577888888999988865431 1111112589999999932232
Q ss_pred cChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
+.+...++++++.++++||.+||-|-. +|+.
T Consensus 233 ~~~~~~~~i~~~~~~~~PilGIClG~Q-lLa~ 263 (360)
T PRK12564 233 ALDYAIEMIRELLEKKIPIFGICLGHQ-LLAL 263 (360)
T ss_pred HHHHHHHHHHHHHHcCCeEEEECHHHH-HHHH
Confidence 236677899999988999999999866 4554
No 212
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=94.85 E-value=0.14 Score=46.34 Aligned_cols=94 Identities=14% Similarity=0.016 Sum_probs=61.6
Q ss_pred CCcEEEEEecCCCc--hhh-HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh
Q 015523 16 FALNVLVPVGFGTE--EME-AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 92 (405)
Q Consensus 16 ~~~ki~ill~~g~~--~~e-~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~ 92 (405)
+.+||+++-+-... ..+ +....+.|++.|+++..+-.... ..+.+ ...|+|+++||- .
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d---------------~~~~l--~~ad~I~v~GGn--t 90 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVAD---------------PVAAI--ENAEAIFVGGGN--T 90 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchh---------------hHHHH--hcCCEEEECCcc--H
Confidence 45789999876532 222 34567788888988776632210 11122 268999999993 3
Q ss_pred hc---cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 93 VR---LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 93 ~~---~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
.. ......+.+.|++++++|+++++.|.| +.+++..
T Consensus 91 ~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAG-Aii~~~~ 129 (233)
T PRK05282 91 FQLLKQLYERGLLAPIREAVKNGTPYIGWSAG-ANVAGPT 129 (233)
T ss_pred HHHHHHHHHCCcHHHHHHHHHCCCEEEEECHH-HHhhhcc
Confidence 22 223456788899999999999999995 5455543
No 213
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=94.78 E-value=0.13 Score=49.99 Aligned_cols=87 Identities=18% Similarity=0.111 Sum_probs=57.6
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 96 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~ 96 (405)
++||+++=+ |+. ..+.+.|++.|+++.++..+.. .+++...++|.|+++||...+.
T Consensus 192 ~~~I~viD~-g~k----~ni~~~L~~~G~~v~vvp~~~~----------------~~~i~~~~~dgIilSgGPg~p~--- 247 (382)
T CHL00197 192 QLKIIVIDF-GVK----YNILRRLKSFGCSITVVPATSP----------------YQDILSYQPDGILLSNGPGDPS--- 247 (382)
T ss_pred CCEEEEEEC-CcH----HHHHHHHHHCCCeEEEEcCCCC----------------HHHHhccCCCEEEEcCCCCChh---
Confidence 467777655 444 3478888888999988843321 1122222589999999842222
Q ss_pred cChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
......+.++++.+.+.||.+||-|-. +|+.
T Consensus 248 ~~~~~i~~i~~~~~~~~PilGIClGhQ-lLa~ 278 (382)
T CHL00197 248 AIHYGIKTVKKLLKYNIPIFGICMGHQ-ILSL 278 (382)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcHHHH-HHHH
Confidence 234566777877777899999999766 4654
No 214
>PRK00758 GMP synthase subunit A; Validated
Probab=94.77 E-value=0.074 Score=46.35 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=44.3
Q ss_pred HHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcc-cEEEEcCCchhhhccccChHHHHHHHHHHHcCCE
Q 015523 36 IVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVF-DLIALPGGMPGSVRLRDCEILKKITSKQAEEKRL 114 (405)
Q Consensus 36 ~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~-d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~ 114 (405)
+.+.|++.|+++.++..+.. .+++. .+ |.+++||| +... ....+.++++ +.++|
T Consensus 15 i~~~l~~~g~~~~~~~~~~~----------------~~~l~--~~~dgivi~Gg-~~~~---~~~~~~~~l~---~~~~P 69 (184)
T PRK00758 15 IHRTLRYLGVDAKIIPNTTP----------------VEEIK--AFEDGLILSGG-PDIE---RAGNCPEYLK---ELDVP 69 (184)
T ss_pred HHHHHHHcCCcEEEEECCCC----------------HHHHh--hcCCEEEECCC-CChh---hccccHHHHH---hCCCC
Confidence 46777888888776653321 12222 45 99999999 3222 2234556665 35899
Q ss_pred EEEEccchHHhhhhc
Q 015523 115 YGAICAAPAVTLLPW 129 (405)
Q Consensus 115 i~aic~g~~~~La~a 129 (405)
|.+||.|-. +|+.+
T Consensus 70 ilGIC~G~Q-~L~~a 83 (184)
T PRK00758 70 ILGICLGHQ-LIAKA 83 (184)
T ss_pred EEEEeHHHH-HHHHh
Confidence 999999765 67765
No 215
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=94.69 E-value=0.044 Score=48.01 Aligned_cols=79 Identities=18% Similarity=0.160 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCccc-CCCCCCcccEEEEcCCchhhhc--------------cccC
Q 015523 34 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSI-SNCSHQVFDLIALPGGMPGSVR--------------LRDC 98 (405)
Q Consensus 34 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~-~~~~~~~~d~liipgg~~~~~~--------------~~~~ 98 (405)
....+.|+..|+.+.++..... . ..+ ... ..+|.||+|||...... ...+
T Consensus 22 ~~~~~~l~~~G~~~~iv~~~~~-~------------~~~~~~l--~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~ 86 (189)
T cd01745 22 QYYVDAVRKAGGLPVLLPPVDD-E------------EDLEQYL--ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERD 86 (189)
T ss_pred HHHHHHHHHCCCEEEEeCCCCC-h------------HHHHHHH--hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHH
Confidence 3466777888888877764432 0 001 111 25899999999421111 1112
Q ss_pred hHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 99 EILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 99 ~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
....++++++.+.++||.++|.|.. +|+.
T Consensus 87 ~~~~~~~~~~~~~~~PilgiC~G~Q-~l~~ 115 (189)
T cd01745 87 AFELALLRAALERGKPILGICRGMQ-LLNV 115 (189)
T ss_pred HHHHHHHHHHHHCCCCEEEEcchHH-HHHH
Confidence 2447889999999999999999766 4554
No 216
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=94.63 E-value=0.093 Score=46.78 Aligned_cols=84 Identities=13% Similarity=0.040 Sum_probs=54.6
Q ss_pred EEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCch---hhhccc
Q 015523 20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP---GSVRLR 96 (405)
Q Consensus 20 i~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~---~~~~~~ 96 (405)
|+|+=|-.- .+......++..++++.+++... ++. ++|.||+||+-. ....++
T Consensus 2 i~iidyg~g---Nl~s~~~al~~~~~~~~~~~~~~-------------------~l~--~~d~iIlPG~g~~~~~~~~l~ 57 (210)
T PRK14004 2 IAILDYGMG---NIHSCLKAVSLYTKDFVFTSDPE-------------------TIE--NSKALILPGDGHFDKAMENLN 57 (210)
T ss_pred EEEEECCCc---hHHHHHHHHHHcCCeEEEECCHH-------------------Hhc--cCCEEEECCCCchHHHHHHHH
Confidence 555544433 44555666677777666653222 232 589999999831 112232
Q ss_pred cChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
...+.+.|+++.++++||.++|.|-. +|++.
T Consensus 58 -~~gl~~~i~~~~~~~~pilGiC~G~Q-~l~~~ 88 (210)
T PRK14004 58 -STGLRSTIDKHVESGKPLFGICIGFQ-ILFES 88 (210)
T ss_pred -HcCcHHHHHHHHHcCCCEEEECHhHH-HHHHh
Confidence 23688899999999999999999755 68764
No 217
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=94.62 E-value=0.11 Score=45.90 Aligned_cols=75 Identities=16% Similarity=0.086 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc--ccChHHHHHHHHH-H
Q 015523 33 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL--RDCEILKKITSKQ-A 109 (405)
Q Consensus 33 ~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~--~~~~~~~~~l~~~-~ 109 (405)
+..+.+.|++.++++.++.... ++. .+|.||+||+....... ...-.+...|+++ +
T Consensus 12 ~~~v~~~l~~~g~~~~~~~~~~-------------------~l~--~~d~lilPG~g~~~~~~~~l~~~~~~~~l~~~~~ 70 (201)
T PRK13152 12 LNSVAKAFEKIGAINFIAKNPK-------------------DLQ--KADKLLLPGVGSFKEAMKNLKELGFIEALKEQVL 70 (201)
T ss_pred HHHHHHHHHHCCCeEEEECCHH-------------------HHc--CCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHH
Confidence 3445677777777776653211 222 48999999973211111 1111234555554 5
Q ss_pred HcCCEEEEEccchHHhhhhc
Q 015523 110 EEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 110 ~~~~~i~aic~g~~~~La~a 129 (405)
++++||.+||.|-. +|+..
T Consensus 71 ~~~~pvlGiC~G~Q-~l~~~ 89 (201)
T PRK13152 71 VQKKPILGICLGMQ-LFLER 89 (201)
T ss_pred hCCCcEEEECHhHH-HHhhc
Confidence 78999999999755 78876
No 218
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=94.36 E-value=0.54 Score=46.41 Aligned_cols=223 Identities=12% Similarity=0.086 Sum_probs=120.8
Q ss_pred ccEEEEc-CCchhhhccccChHHHHHHHHHHHc---CCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-Ccc--
Q 015523 80 FDLIALP-GGMPGSVRLRDCEILKKITSKQAEE---KRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FWA-- 152 (405)
Q Consensus 80 ~d~liip-gg~~~~~~~~~~~~~~~~l~~~~~~---~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~~~-- 152 (405)
+|++++= ||. .. -.+.-++++.+|++... ...+..-|+ ...+|+.+|=++.|. |=|- ...|+. ...
T Consensus 133 ~DvvivEIGGT--VG-DIEslpFlEAiRQ~~~e~g~~n~~fiH~t-lvpyi~~~gE~KTKP-TQhS--VkeLR~iGI~PD 205 (533)
T COG0504 133 ADVVIVEIGGT--VG-DIESLPFLEAIRQLRLELGRENVLFIHVT-LVPYIAAAGELKTKP-TQHS--VKELRSIGIQPD 205 (533)
T ss_pred CCEEEEEeCCc--ee-cccccHHHHHHHHHHhhhCcccEEEEEEe-cceeecccCccCCCC-chHH--HHHHHhcCCCcc
Confidence 7888884 663 22 12455777777776532 334555566 455688888777654 2221 112222 000
Q ss_pred -----ccCc-------------EEEeCCeEcCCCcccHHHHHHHHHHHhcChHHHHHHHHhcccc-cccCcccccccccc
Q 015523 153 -----VKSN-------------IHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMH-NADNSLKKEEFNEV 213 (405)
Q Consensus 153 -----~~~~-------------~v~dg~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~-~~~~~~~~~~~~~~ 213 (405)
.+++ -|....+|++-...+.++.=+.+- .+.+...+.+.|.++ ..++-+.|+.+-..
T Consensus 206 iii~Rs~~~l~~~~~~KIAlfc~V~~~~Vi~~~Dv~siY~vPl~l~----~qgl~~~i~~~l~l~~~~~dl~~W~~~v~~ 281 (533)
T COG0504 206 ILICRSERPLPEEERRKIALFCNVPEEAVISAPDVESIYEVPLLLE----KQGLDDYILERLNLNAPEPDLSEWKDLVDK 281 (533)
T ss_pred eEEEecCCCCCHHHHHHHHHhcCCCHHHeEecccHHHHHHhHHHHH----HcchHHHHHHHhCCCCCCcchHHHHHHHHH
Confidence 0000 122245677666665555544444 455566777888885 34342223322221
Q ss_pred ccccCCcCEEEEEeCCCCcHHHHHHHHHHHHhCC----CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEc
Q 015523 214 EWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILP 289 (405)
Q Consensus 214 ~~~~~~~~~V~il~~~g~~~~e~~~~~~~l~~~~----~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livp 289 (405)
.....+.-+|+++-==--..-.+.++.+.|..++ .++++...+.. .+.... ...+.. .+|.++||
T Consensus 282 i~~~~~~v~IalVGKYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse-~le~~~------~~~~~~----~~dgIlVP 350 (533)
T COG0504 282 IKNPKKEVTIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSE-DLEEEN------AAELEK----LVDGILVP 350 (533)
T ss_pred hcCCCCceEEEEEECCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccc-cccccc------hhhhhh----cCCEEEeC
Confidence 1111222456665311113334567888888886 45555555543 111110 001111 28999999
Q ss_pred CCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHH
Q 015523 290 GGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVL 328 (405)
Q Consensus 290 gG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~L 328 (405)
||++. +.-+--+..++.+..++.|..+||-|..+.
T Consensus 351 GGFG~----RG~eGkI~Ai~yAREn~iP~lGIClGmQ~a 385 (533)
T COG0504 351 GGFGY----RGVEGKIAAIRYARENNIPFLGICLGMQLA 385 (533)
T ss_pred CCCCc----CchHHHHHHHHHHHhcCCCEEEEchhHHHH
Confidence 99842 344556677788889999999999999865
No 219
>PRK05637 anthranilate synthase component II; Provisional
Probab=94.34 E-value=0.16 Score=45.22 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCC
Q 015523 34 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKR 113 (405)
Q Consensus 34 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (405)
..+.+.|++.+++++++..+.. ++++....||.||+-||...+. +.....++++.+ ..++
T Consensus 15 ~nl~~~l~~~g~~~~v~~~~~~----------------~~~l~~~~~~~iIlsgGPg~~~---d~~~~~~li~~~-~~~~ 74 (208)
T PRK05637 15 YNLVDAFAVAGYKCTVFRNTVP----------------VEEILAANPDLICLSPGPGHPR---DAGNMMALIDRT-LGQI 74 (208)
T ss_pred HHHHHHHHHCCCcEEEEeCCCC----------------HHHHHhcCCCEEEEeCCCCCHH---HhhHHHHHHHHH-hCCC
Confidence 3468888888999998876431 1111112589999988732222 222345566543 3579
Q ss_pred EEEEEccchHHhhhhc
Q 015523 114 LYGAICAAPAVTLLPW 129 (405)
Q Consensus 114 ~i~aic~g~~~~La~a 129 (405)
||.+||-|.. +|+.+
T Consensus 75 PiLGIClG~Q-lla~a 89 (208)
T PRK05637 75 PLLGICLGFQ-ALLEH 89 (208)
T ss_pred CEEEEcHHHH-HHHHH
Confidence 9999999766 67764
No 220
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=94.34 E-value=0.065 Score=49.32 Aligned_cols=51 Identities=18% Similarity=0.134 Sum_probs=39.1
Q ss_pred CCccEEEEcCCccchH-------------hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 281 SVYDLIILPGGVAGAE-------------RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 281 ~~~D~livpgG~~~~~-------------~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
+.+|.++++||..+.. ....+...+++++.+.++++||.+||-|..+|+.+
T Consensus 60 ~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva 123 (254)
T PRK11366 60 PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVA 123 (254)
T ss_pred HhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence 4589999999842221 11223467899999999999999999999999766
No 221
>PLN02347 GMP synthetase
Probab=94.24 E-value=0.15 Score=52.08 Aligned_cols=91 Identities=16% Similarity=0.124 Sum_probs=55.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 300 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~ 300 (405)
.+|+|+=|-.-. ...+...+++.|+.++++..+. .++++...++|+||+|||...... ..
T Consensus 11 ~~IlIID~G~~~---t~~I~r~lrelgv~~~v~p~~~----------------~~~~i~~~~~dgIILsGGP~sv~~-~~ 70 (536)
T PLN02347 11 DVVLILDYGSQY---THLITRRVRELGVYSLLLSGTA----------------SLDRIASLNPRVVILSGGPHSVHV-EG 70 (536)
T ss_pred CEEEEEECCCcH---HHHHHHHHHHCCCeEEEEECCC----------------CHHHHhcCCCCEEEECCCCCcccc-cC
Confidence 356666443222 2345777888888877775442 233332236899999999643221 12
Q ss_pred ChHHH-HHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 301 SRILK-KLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 301 ~~~l~-~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.+.+. .+++.....+.||.+||-|..+|+.+
T Consensus 71 ~p~~~~~i~~~~~~~~iPILGIClG~QlLa~a 102 (536)
T PLN02347 71 APTVPEGFFDYCRERGVPVLGICYGMQLIVQK 102 (536)
T ss_pred CchhhHHHHHHHHhcCCcEEEECHHHHHHHHH
Confidence 22222 23333445789999999999999886
No 222
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=94.10 E-value=0.18 Score=49.27 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=55.0
Q ss_pred HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCC
Q 015523 237 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGR 316 (405)
Q Consensus 237 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k 316 (405)
..++..|.+.|+.+.++..+. .++++...++|.||+-||.+++.. .+..++.++++. .++
T Consensus 252 ~nIlr~L~~~G~~v~VvP~~~----------------~~~ei~~~~pDGIiLSnGPGDP~~---~~~~ie~ik~l~-~~i 311 (415)
T PLN02771 252 HNILRRLASYGCKITVVPSTW----------------PASEALKMKPDGVLFSNGPGDPSA---VPYAVETVKELL-GKV 311 (415)
T ss_pred HHHHHHHHHcCCeEEEECCCC----------------CHHHHhhcCCCEEEEcCCCCChhH---hhHHHHHHHHHH-hCC
Confidence 667888889999998885443 123332346899999999655433 355677777765 478
Q ss_pred EEEEEchHHHHHHHc
Q 015523 317 IYGAVCSSPIVLHKH 331 (405)
Q Consensus 317 ~i~aic~g~~~La~a 331 (405)
||.+||-|-.+|+.+
T Consensus 312 PIlGICLGhQlLa~A 326 (415)
T PLN02771 312 PVFGICMGHQLLGQA 326 (415)
T ss_pred CEEEEcHHHHHHHHh
Confidence 999999999999986
No 223
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=94.09 E-value=0.12 Score=48.12 Aligned_cols=79 Identities=22% Similarity=0.264 Sum_probs=47.7
Q ss_pred HHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh---hhcChHHHHHHHHHhhc
Q 015523 238 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER---LQKSRILKKLLKEQKVA 314 (405)
Q Consensus 238 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~---~~~~~~l~~~l~~~~~~ 314 (405)
.-++.+.++|..|..+-.+.. ...+++. ...+|.|++|||..+... ......++++..+..++
T Consensus 24 ~Yv~~l~~aG~~vvpi~~~~~-------------~~~l~~~-l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~ 89 (273)
T cd01747 24 SYVKFLESAGARVVPIWINES-------------EEYYDKL-FKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDA 89 (273)
T ss_pred HHHHHHHHCCCeEEEEEeCCc-------------HHHHHHH-HhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhc
Confidence 356777788888776644321 1223331 256899999999533321 11123344444444444
Q ss_pred C--CEEEEEchHHHHHHH
Q 015523 315 G--RIYGAVCSSPIVLHK 330 (405)
Q Consensus 315 ~--k~i~aic~g~~~La~ 330 (405)
| .||.++|-|..+|+.
T Consensus 90 g~~~Pv~GiClG~QlL~~ 107 (273)
T cd01747 90 GDYFPVWGTCLGFELLTY 107 (273)
T ss_pred CCCCcEEEEcHHHHHHHH
Confidence 4 799999999998876
No 224
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=94.08 E-value=0.11 Score=47.30 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=36.5
Q ss_pred CCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHH
Q 015523 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH 329 (405)
Q Consensus 281 ~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La 329 (405)
..+|.|++|||.. .. .....+..+++....++|+.+||.|..+|+
T Consensus 54 ~~~dgivl~GG~~-~~---~~~~~~~~i~~~~~~~~PvlGIClG~Q~l~ 98 (235)
T cd01746 54 KGADGILVPGGFG-IR---GVEGKILAIKYARENNIPFLGICLGMQLAV 98 (235)
T ss_pred ccCCEEEECCCCC-Cc---chhhHHHHHHHHHHCCceEEEEEhHHHHHH
Confidence 6799999999963 22 234567788888999999999999998775
No 225
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=94.05 E-value=0.21 Score=46.89 Aligned_cols=111 Identities=16% Similarity=0.174 Sum_probs=63.6
Q ss_pred CcCEEEEEeCC-CCcHHHHHHHHHHHHhCC--CeEEEEeecCCceeecCCCcEEe-eCCCccCcCCCCccEEEEcCCccc
Q 015523 219 RMPRVLIPIAN-GSEEIEIVTIVDILRRAK--VDVVVASVERSTQIVASQGVKII-ADKSISDAAESVYDLIILPGGVAG 294 (405)
Q Consensus 219 ~~~~V~il~~~-g~~~~e~~~~~~~l~~~~--~~v~~vs~~~~~~v~~~~g~~v~-~~~~l~~~~~~~~D~livpgG~~~ 294 (405)
++.||+||-.- .-...| ..+...|.... ++++++.+..- ..+....-.+. -=.+++++....||++||.|+...
T Consensus 34 rpl~i~ilNlMp~k~~TE-~q~~rll~~~~~qv~v~~~~~~~h-~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e 111 (302)
T PRK05368 34 RPLKILILNLMPKKIETE-TQFLRLLGNTPLQVDIHLLRIDSH-ESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVE 111 (302)
T ss_pred CCccEEEEeCCCCCchHH-HHHHHHhcCCCceEEEEEEecCCc-CCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCC
Confidence 46899999653 344566 44566665544 45666655542 11111111111 112556665688999999998633
Q ss_pred hHhhhcC---hHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 295 AERLQKS---RILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 295 ~~~~~~~---~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.-...+. .++.++++...++++++.+||=|..+++.+
T Consensus 112 ~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~a 151 (302)
T PRK05368 112 QLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYH 151 (302)
T ss_pred CccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence 1111111 135555555556789999999999987743
No 226
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=94.05 E-value=0.25 Score=50.44 Aligned_cols=92 Identities=15% Similarity=0.143 Sum_probs=57.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 300 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~ 300 (405)
+||.|+ |..+..- ..+.+.|++.|+++.++..+- + .+..++++...++|.||+-||.+.+.....
T Consensus 2 ~~iLiI--Dn~dsft-~nl~~~lr~~g~~v~V~~~~~--~----------~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~ 66 (531)
T PRK09522 2 ADILLL--DNIDSFT-YNLADQLRSNGHNVVIYRNHI--P----------AQTLIERLATMSNPVLMLSPGPGVPSEAGC 66 (531)
T ss_pred CeEEEE--eCCChHH-HHHHHHHHHCCCCEEEEECCC--C----------CccCHHHHHhcCcCEEEEcCCCCChhhCCC
Confidence 454444 5444433 457888899999998887542 1 112334432245789999888755543322
Q ss_pred ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
...+ ++ ....++||.+||-|..+|+.+
T Consensus 67 ~~~i---~~-~~~~~iPILGIClG~QlLa~a 93 (531)
T PRK09522 67 MPEL---LT-RLRGKLPIIGICLGHQAIVEA 93 (531)
T ss_pred CHHH---HH-HHhcCCCEEEEcHHHHHHHHh
Confidence 2233 22 235689999999999999876
No 227
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=93.87 E-value=0.17 Score=48.76 Aligned_cols=85 Identities=22% Similarity=0.142 Sum_probs=55.7
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcccc
Q 015523 18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD 97 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~ 97 (405)
+||+++=+ |+. ..+.+.|.+.|+++.++..+.. ++++....+|.|+++||...+. .
T Consensus 174 ~~i~viD~-G~k----~ni~~~L~~~G~~v~vvp~~~~----------------~~~i~~~~pDGIiLSgGPgdp~---~ 229 (358)
T TIGR01368 174 KRVVVIDF-GVK----QNILRRLVKRGCEVTVVPYDTD----------------AEEIKKYNPDGIFLSNGPGDPA---A 229 (358)
T ss_pred cEEEEEeC-CcH----HHHHHHHHHCCCEEEEEcCCCC----------------HHHHHhhCCCEEEECCCCCCHH---H
Confidence 46666643 333 3578888888999988753321 1122112469999999932222 3
Q ss_pred ChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 98 CEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 98 ~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
.+...++++++.+ ++||.+||-|-. +|+.
T Consensus 230 ~~~~i~~i~~~~~-~~PILGIClG~Q-lLa~ 258 (358)
T TIGR01368 230 VEPAIETIRKLLE-KIPIFGICLGHQ-LLAL 258 (358)
T ss_pred HHHHHHHHHHHHc-CCCEEEECHHHH-HHHH
Confidence 4567788888887 899999999866 5664
No 228
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=93.80 E-value=0.34 Score=43.18 Aligned_cols=99 Identities=18% Similarity=0.152 Sum_probs=64.1
Q ss_pred CcCEEEEEeCCCCcHHH-HHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523 219 RMPRVLIPIANGSEEIE-IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 297 (405)
Q Consensus 219 ~~~~V~il~~~g~~~~e-~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~ 297 (405)
...||+++-.......+ .....+.|.+.|+++..+-... . -..+...+.+ ...|+|+++||. +..
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~--~--------~~~~~~~~~l--~~ad~I~~~GG~--~~~ 93 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLID--T--------ANDPDVVARL--LEADGIFVGGGN--QLR 93 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccC--C--------CCCHHHHHHH--hhCCEEEEcCCc--HHH
Confidence 35788888776544333 4456778888887766553321 0 0001112223 678999999995 433
Q ss_pred h---hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 298 L---QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 298 ~---~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
+ .....+.+.|++.+++|.++++.|+|+.++...
T Consensus 94 ~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 94 LLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred HHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 2 233446666666777999999999999999984
No 229
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=93.72 E-value=0.21 Score=48.09 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=56.2
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 96 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~ 96 (405)
.+||.++=+ |+ -..+.+.|++.|+.+.++..+.. .+++....+|.|+++||..++ .
T Consensus 167 ~~~V~viD~-G~----k~ni~~~L~~~G~~v~vvp~~~~----------------~~~i~~~~~DGIiLsgGPgdp---~ 222 (354)
T PRK12838 167 GKHVALIDF-GY----KKSILRSLSKRGCKVTVLPYDTS----------------LEEIKNLNPDGIVLSNGPGDP---K 222 (354)
T ss_pred CCEEEEECC-CH----HHHHHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEEcCCCCCh---H
Confidence 456666543 32 35567788888999988864431 111111258999999994222 2
Q ss_pred cChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
+.....++++++.++ +||.+||-|-. +|+.
T Consensus 223 ~~~~~~~~i~~~~~~-~PvlGIClG~Q-lLa~ 252 (354)
T PRK12838 223 ELQPYLPEIKKLISS-YPILGICLGHQ-LIAL 252 (354)
T ss_pred HhHHHHHHHHHHhcC-CCEEEECHHHH-HHHH
Confidence 344667788888876 99999999766 5664
No 230
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=93.40 E-value=0.04 Score=46.57 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=54.8
Q ss_pred HHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh---hhcChHHHHHHHHHhhc
Q 015523 238 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER---LQKSRILKKLLKEQKVA 314 (405)
Q Consensus 238 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~---~~~~~~l~~~l~~~~~~ 314 (405)
...+.|++.|++++.+..... . .....+.+ .+.|+|++-||. +.. ..++..+.+.|++.+++
T Consensus 4 ~~~~~f~~~g~~v~~l~~~~~-~----------~~~~~~~i--~~ad~I~~~GG~--~~~l~~~l~~t~l~~~i~~~~~~ 68 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQLDLSDR-N----------DADILEAI--READAIFLGGGD--TFRLLRQLKETGLDEAIREAYRK 68 (154)
T ss_dssp HHHHHHHHCT-EEEECCCTSC-G----------HHHHHHHH--HHSSEEEE--S---HHHHHHHHHHTTHHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEEEEeccCC-C----------hHHHHHHH--HhCCEEEECCCC--HHHHHHHHHhCCHHHHHHHHHHC
Confidence 467888889988777766552 0 01122333 568999999995 433 34566799999999999
Q ss_pred CCEEEEEchHHHHHHHcC
Q 015523 315 GRIYGAVCSSPIVLHKHG 332 (405)
Q Consensus 315 ~k~i~aic~g~~~La~aG 332 (405)
|+++++..+|+.++...+
T Consensus 69 G~vi~G~SAGA~i~~~~~ 86 (154)
T PF03575_consen 69 GGVIIGTSAGAMILGPSI 86 (154)
T ss_dssp TSEEEEETHHHHCTSSBS
T ss_pred CCEEEEEChHHhhccCce
Confidence 999999999999875543
No 231
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=93.24 E-value=0.26 Score=43.29 Aligned_cols=50 Identities=26% Similarity=0.364 Sum_probs=38.2
Q ss_pred CCccEEEEcCCccchHhhh-cC-hHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523 281 SVYDLIILPGGVAGAERLQ-KS-RILKKLLKEQKVAGRIYGAVCSSPIVLHK 330 (405)
Q Consensus 281 ~~~D~livpgG~~~~~~~~-~~-~~l~~~l~~~~~~~k~i~aic~g~~~La~ 330 (405)
.++|++++.||..-...+. ++ ..-.+-|+.....|+|+.+||.|..+|.+
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~ 102 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQ 102 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccc
Confidence 5799999998863333332 23 45566788888999999999999999974
No 232
>PRK00074 guaA GMP synthase; Reviewed
Probab=93.20 E-value=0.3 Score=49.75 Aligned_cols=89 Identities=19% Similarity=0.110 Sum_probs=56.6
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 299 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~ 299 (405)
+.+|+||=| |..-. -.+...+++.|...+++..+.. .++++..++|++|+|||...... .
T Consensus 3 ~~~i~vlD~-Gsq~~--~li~r~lrelg~~~~v~p~~~~----------------~~~l~~~~~dgIIlsGGp~sv~~-~ 62 (511)
T PRK00074 3 HDKILILDF-GSQYT--QLIARRVRELGVYSEIVPYDIS----------------AEEIRAFNPKGIILSGGPASVYE-E 62 (511)
T ss_pred CCEEEEEEC-CCCcH--HHHHHHHHHCCCeEEEEECCCC----------------HHHHhccCCCEEEECCCCccccc-C
Confidence 456777766 33332 2456788888988887754431 22332235799999999643322 1
Q ss_pred cChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
..+.+ .+...+.++||.+||-|..+|+.+
T Consensus 63 ~~p~~---~~~i~~~~~PvLGIC~G~QlLa~~ 91 (511)
T PRK00074 63 GAPRA---DPEIFELGVPVLGICYGMQLMAHQ 91 (511)
T ss_pred CCccc---cHHHHhCCCCEEEECHHHHHHHHH
Confidence 12222 244566899999999999999875
No 233
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=93.13 E-value=0.82 Score=40.98 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=65.6
Q ss_pred cCEEEEEeCCCCcHHHH-HHHHHHHHhCCC-eEEEEeecCCceeecCCCcEEeeCCC-ccCcCCCCccEEEEcCCccchH
Q 015523 220 MPRVLIPIANGSEEIEI-VTIVDILRRAKV-DVVVASVERSTQIVASQGVKIIADKS-ISDAAESVYDLIILPGGVAGAE 296 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~-~~~~~~l~~~~~-~v~~vs~~~~~~v~~~~g~~v~~~~~-l~~~~~~~~D~livpgG~~~~~ 296 (405)
..||+++-+-+....+. -.....|.+.|+ +++++..+.. . . ..+.. .+.+ .+.|+|++.||. +.
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~-~--~------a~~~~~~~~l--~~ad~I~~~GG~--~~ 95 (217)
T cd03145 29 GARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSR-E--A------ANDPEVVARL--RDADGIFFTGGD--QL 95 (217)
T ss_pred CCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCCh-H--H------cCCHHHHHHH--HhCCEEEEeCCc--HH
Confidence 47888887766544443 335567777786 3565544331 1 0 00111 1223 678999999995 43
Q ss_pred h---hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 297 R---LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 297 ~---~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
. ......+.+.|++.+++|.++++..+|+.++...
T Consensus 96 ~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 96 RITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred HHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 3 3456678899999999999999999999998754
No 234
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.08 E-value=0.57 Score=40.56 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=56.5
Q ss_pred CCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHH
Q 015523 229 NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLL 308 (405)
Q Consensus 229 ~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l 308 (405)
|+++..- ..+++.|...|.++.++-.+.- +.+.++..++|+|++--|.+.+. +.....+.|
T Consensus 8 DNyDSFt-yNLv~yl~~lg~~v~V~rnd~~---------------~~~~~~~~~pd~iviSPGPG~P~---d~G~~~~~i 68 (191)
T COG0512 8 DNYDSFT-YNLVQYLRELGAEVTVVRNDDI---------------SLELIEALKPDAIVISPGPGTPK---DAGISLELI 68 (191)
T ss_pred ECccchH-HHHHHHHHHcCCceEEEECCcc---------------CHHHHhhcCCCEEEEcCCCCChH---HcchHHHHH
Confidence 5444333 5577888888877777655421 12233335689999866653333 566788899
Q ss_pred HHHhhcCCEEEEEchHHHHHHHc
Q 015523 309 KEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 309 ~~~~~~~k~i~aic~g~~~La~a 331 (405)
+++ ....||.++|-|-..|+.+
T Consensus 69 ~~~-~~~~PiLGVCLGHQai~~~ 90 (191)
T COG0512 69 RRF-AGRIPILGVCLGHQAIAEA 90 (191)
T ss_pred HHh-cCCCCEEEECccHHHHHHH
Confidence 988 6678999999999998765
No 235
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=92.93 E-value=0.35 Score=49.54 Aligned_cols=87 Identities=11% Similarity=0.135 Sum_probs=57.7
Q ss_pred EEeCCCCcHHHHHHHHHHHHhCCCe-EEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChH
Q 015523 225 IPIANGSEEIEIVTIVDILRRAKVD-VVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRI 303 (405)
Q Consensus 225 il~~~g~~~~e~~~~~~~l~~~~~~-v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~ 303 (405)
|++.|..+..- ..+.+.|++.+.. +.++-++.- .++++....+|+||+.||...+.+ +..
T Consensus 2 il~idn~dsft-~nl~~~l~~~g~~~v~~~~~~~~---------------~~~~~~~~~~d~vIlsgGP~~p~~---~~~ 62 (534)
T PRK14607 2 IILIDNYDSFT-YNIYQYIGELGPEEIEVVRNDEI---------------TIEEIEALNPSHIVISPGPGRPEE---AGI 62 (534)
T ss_pred EEEEECchhHH-HHHHHHHHHcCCCeEEEECCCCC---------------CHHHHHhcCCCEEEECCCCCChhh---CCc
Confidence 44555555444 3477888888875 665544432 123333346899999999755443 233
Q ss_pred HHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 304 LKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 304 l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
..++++. ...+.||.+||-|..+|+.+
T Consensus 63 ~~~li~~-~~~~~PvLGIClG~QlLa~a 89 (534)
T PRK14607 63 SVEVIRH-FSGKVPILGVCLGHQAIGYA 89 (534)
T ss_pred cHHHHHH-hhcCCCEEEEcHHHHHHHHH
Confidence 4566765 46789999999999999876
No 236
>PRK06186 hypothetical protein; Validated
Probab=92.74 E-value=0.73 Score=41.44 Aligned_cols=87 Identities=17% Similarity=0.069 Sum_probs=54.2
Q ss_pred cEEEEEecCCCc-hhhHHHHHHHHHhc----CCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh
Q 015523 18 LNVLVPVGFGTE-EMEAVIIVDVLRRA----GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 92 (405)
Q Consensus 18 ~ki~ill~~g~~-~~e~~~~~~~l~~~----~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~ 92 (405)
.+|+++- .-.. ...+..+.+.|+-+ +.++++...+.. .+... . .+ .++|.++||||++
T Consensus 2 v~IalVG-KY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~-~l~~~--------~---~l--~~~dgilvpgGfg-- 64 (229)
T PRK06186 2 LRIALVG-DYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTP-EITDP--------E---DL--AGFDGIWCVPGSP-- 64 (229)
T ss_pred cEEEEEE-CCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchh-hcCCh--------h---hH--hhCCeeEeCCCCC--
Confidence 3666553 2122 23445556666544 566666655543 22211 1 12 3689999999952
Q ss_pred hccccChHHHHHHHHHHHcCCEEEEEccchH
Q 015523 93 VRLRDCEILKKITSKQAEEKRLYGAICAAPA 123 (405)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~ 123 (405)
.+.-+.-+..++.+.+++.|+.+||-|-.
T Consensus 65 --~rg~~Gki~ai~~Are~~iP~LGIClGmQ 93 (229)
T PRK06186 65 --YRNDDGALTAIRFARENGIPFLGTCGGFQ 93 (229)
T ss_pred --cccHhHHHHHHHHHHHcCCCeEeechhhH
Confidence 23456677789999999999999999744
No 237
>PRK05380 pyrG CTP synthetase; Validated
Probab=92.62 E-value=0.74 Score=46.50 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=56.0
Q ss_pred CCcEEEEEe-cCCCchhhHHHHHHHHHhc----CCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCch
Q 015523 16 FALNVLVPV-GFGTEEMEAVIIVDVLRRA----GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP 90 (405)
Q Consensus 16 ~~~ki~ill-~~g~~~~e~~~~~~~l~~~----~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~ 90 (405)
...+||++- |-... ..+..+.+.|+.+ +.++++...+.. .+... ...+.+ ..+|.+++|||+.
T Consensus 287 ~~v~IalVGKY~~l~-DaY~Sv~eAL~hag~~~~~~v~i~wIdse-~l~~~--------~~~~~L--~~~DGIIlpGGfG 354 (533)
T PRK05380 287 GEVTIALVGKYVELP-DAYKSVIEALKHAGIANDVKVNIKWIDSE-DLEEE--------NVAELL--KGVDGILVPGGFG 354 (533)
T ss_pred CceEEEEEeCccCCc-HHHHHHHHHHHHHHHHcCCeeEEEEEChh-hccCc--------chhhHh--hcCCEEEecCCCC
Confidence 446777764 22222 2355666777655 455666655543 22211 011222 3689999999952
Q ss_pred hhhccccChHHHHHHHHHHHcCCEEEEEccchH
Q 015523 91 GSVRLRDCEILKKITSKQAEEKRLYGAICAAPA 123 (405)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~ 123 (405)
.. ..+....+++.+.++++|+.+||-|-.
T Consensus 355 -~~---~~~g~i~~i~~a~e~~iPiLGIClGmQ 383 (533)
T PRK05380 355 -ER---GIEGKILAIRYARENNIPFLGICLGMQ 383 (533)
T ss_pred -cc---ccccHHHHHHHHHHCCCcEEEEchHHH
Confidence 32 234567788989999999999999754
No 238
>PLN02347 GMP synthetase
Probab=92.13 E-value=0.45 Score=48.57 Aligned_cols=90 Identities=17% Similarity=0.124 Sum_probs=52.8
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccC
Q 015523 19 NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC 98 (405)
Q Consensus 19 ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~ 98 (405)
||+|+=+-. .-...+...+++.|+.+.++..+.. .+++...++|.||+||| +......+.
T Consensus 12 ~IlIID~G~---~~t~~I~r~lrelgv~~~v~p~~~~----------------~~~i~~~~~dgIILsGG-P~sv~~~~~ 71 (536)
T PLN02347 12 VVLILDYGS---QYTHLITRRVRELGVYSLLLSGTAS----------------LDRIASLNPRVVILSGG-PHSVHVEGA 71 (536)
T ss_pred EEEEEECCC---cHHHHHHHHHHHCCCeEEEEECCCC----------------HHHHhcCCCCEEEECCC-CCcccccCC
Confidence 566664332 2234557788888988888754431 11222125899999999 333222222
Q ss_pred hHHH-HHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 99 EILK-KITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 99 ~~~~-~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
+.+. .+++...+.+.||.+||-|-. +|+.+
T Consensus 72 p~~~~~i~~~~~~~~iPILGIClG~Q-lLa~a 102 (536)
T PLN02347 72 PTVPEGFFDYCRERGVPVLGICYGMQ-LIVQK 102 (536)
T ss_pred chhhHHHHHHHHhcCCcEEEECHHHH-HHHHH
Confidence 2232 233333456899999999766 57653
No 239
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=91.86 E-value=0.58 Score=44.35 Aligned_cols=75 Identities=17% Similarity=0.105 Sum_probs=58.8
Q ss_pred HHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCE
Q 015523 238 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI 317 (405)
Q Consensus 238 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~ 317 (405)
..+..|.+.|+++.++-.+- +.+++..-++|.|++.-|.+++. .-+..++.++++....+|
T Consensus 192 nIlr~L~~rg~~vtVVP~~t----------------~~eeIl~~~pDGiflSNGPGDP~---~~~~~i~~ik~l~~~~iP 252 (368)
T COG0505 192 NILRELVKRGCRVTVVPADT----------------SAEEILALNPDGIFLSNGPGDPA---PLDYAIETIKELLGTKIP 252 (368)
T ss_pred HHHHHHHHCCCeEEEEcCCC----------------CHHHHHhhCCCEEEEeCCCCChh---HHHHHHHHHHHHhccCCC
Confidence 46677778899988874433 45555446799999999876653 346788999999998889
Q ss_pred EEEEchHHHHHHHc
Q 015523 318 YGAVCSSPIVLHKH 331 (405)
Q Consensus 318 i~aic~g~~~La~a 331 (405)
+.+||-|=.+|+.|
T Consensus 253 ifGICLGHQllalA 266 (368)
T COG0505 253 IFGICLGHQLLALA 266 (368)
T ss_pred eEEEcHHHHHHHHh
Confidence 99999999999876
No 240
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=91.78 E-value=1.8 Score=37.64 Aligned_cols=94 Identities=15% Similarity=0.199 Sum_probs=60.9
Q ss_pred cCEEEEEeCCCCcHHHHH-----H----HHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcC
Q 015523 220 MPRVLIPIANGSEEIEIV-----T----IVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG 290 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~-----~----~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpg 290 (405)
.+|++++..+. ++|++ . +...|...|-.|++.-.-.+ .++ ++-+.+.||.++|.|
T Consensus 4 ~kr~Alf~at~--dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~g---------efP-----~~~Dl~ky~gfvIsG 67 (245)
T KOG3179|consen 4 QKRIALFLATP--DSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDG---------EFP-----QEEDLEKYDGFVISG 67 (245)
T ss_pred ceeEEEEecCC--chhhhhhhhcCHHHHHHHHhcccCceeEEEEEecC---------CCC-----ChhhhhhhceEEEeC
Confidence 47888887653 22222 2 23444455677777655443 111 222347799999999
Q ss_pred CccchHhhhcC---hHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 291 GVAGAERLQKS---RILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 291 G~~~~~~~~~~---~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
...++.. +. ..|..++++.....+.|.+||-|=.++|++
T Consensus 68 S~~dAf~--d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara 109 (245)
T KOG3179|consen 68 SKHDAFS--DADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARA 109 (245)
T ss_pred Ccccccc--cchHHHHHHHHHHHHHhhccceEEEeccHHHHHHh
Confidence 7643322 22 267778888878889999999999999987
No 241
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=91.75 E-value=0.92 Score=41.61 Aligned_cols=99 Identities=21% Similarity=0.232 Sum_probs=65.7
Q ss_pred CcCEEEEEeCCCCcHHH-HHHHHHHHHhCCC-eEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523 219 RMPRVLIPIANGSEEIE-IVTIVDILRRAKV-DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 296 (405)
Q Consensus 219 ~~~~V~il~~~g~~~~e-~~~~~~~l~~~~~-~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~ 296 (405)
...||+++-.-...+.+ .....+.|.+.|+ .+.++..... . .-..+...+-+ ...|+|++.||. ..
T Consensus 27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r-~-------~a~~~~~~~~l--~~ad~I~~~GGn--q~ 94 (250)
T TIGR02069 27 EDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVRER-E-------DASDENAIALL--SNATGIFFTGGD--QL 94 (250)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCCh-H-------HccCHHHHHHH--hhCCEEEEeCCC--HH
Confidence 34689988765444434 3456678888887 4666655321 0 00001111223 678999999995 43
Q ss_pred h---hhcChHHHHHHHHHhhcCCEEEEEchHHHHHH
Q 015523 297 R---LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH 329 (405)
Q Consensus 297 ~---~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La 329 (405)
. ..+...+.+.|++.+++|.++++..+|+.++.
T Consensus 95 ~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~ 130 (250)
T TIGR02069 95 RITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMS 130 (250)
T ss_pred HHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcc
Confidence 3 34677788899999999999999999999774
No 242
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=91.71 E-value=0.8 Score=39.67 Aligned_cols=86 Identities=16% Similarity=0.156 Sum_probs=54.5
Q ss_pred EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHH
Q 015523 22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL 101 (405)
Q Consensus 22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~ 101 (405)
||+.|+++... ..+++.|+..+.++.++--+.- +.......++|.|+|--|...+. +....
T Consensus 4 IL~IDNyDSFt-yNLv~yl~~lg~~v~V~rnd~~---------------~~~~~~~~~pd~iviSPGPG~P~---d~G~~ 64 (191)
T COG0512 4 ILLIDNYDSFT-YNLVQYLRELGAEVTVVRNDDI---------------SLELIEALKPDAIVISPGPGTPK---DAGIS 64 (191)
T ss_pred EEEEECccchH-HHHHHHHHHcCCceEEEECCcc---------------CHHHHhhcCCCEEEEcCCCCChH---HcchH
Confidence 34445555443 5667888888877777765421 11122223589999976632222 45567
Q ss_pred HHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 102 KKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 102 ~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
.+.|+++ ....||.++|-|-. .|+.
T Consensus 65 ~~~i~~~-~~~~PiLGVCLGHQ-ai~~ 89 (191)
T COG0512 65 LELIRRF-AGRIPILGVCLGHQ-AIAE 89 (191)
T ss_pred HHHHHHh-cCCCCEEEECccHH-HHHH
Confidence 7888877 77789999999765 4554
No 243
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=91.60 E-value=1 Score=48.02 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=32.8
Q ss_pred CCccEEEEcCCccchHhhhcChHHHHHHHHHhhc----CCEEEEEchHHHHHHHc
Q 015523 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVA----GRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 281 ~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~----~k~i~aic~g~~~La~a 331 (405)
..||+|||.||.+.+. +..-..++++..+. ..||.+||-|..+|+.+
T Consensus 52 ~~~D~VVIspGPG~p~----~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a 102 (742)
T TIGR01823 52 PLFDAIVVGPGPGNPN----NAQDMGIISELWELANLDEVPVLGICLGFQSLCLA 102 (742)
T ss_pred cCCCEEEECCCCCCcc----chhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhh
Confidence 5799999988865432 22223444444433 59999999999999876
No 244
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=91.53 E-value=0.29 Score=44.40 Aligned_cols=42 Identities=24% Similarity=0.232 Sum_probs=33.2
Q ss_pred cccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHH
Q 015523 79 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAV 124 (405)
Q Consensus 79 ~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~ 124 (405)
.+|.|++|||. +.. ..+....+++.+++.++|+.+||.|-..
T Consensus 55 ~~dgivl~GG~-~~~---~~~~~~~~i~~~~~~~~PvlGIClG~Q~ 96 (235)
T cd01746 55 GADGILVPGGF-GIR---GVEGKILAIKYARENNIPFLGICLGMQL 96 (235)
T ss_pred cCCEEEECCCC-CCc---chhhHHHHHHHHHHCCceEEEEEhHHHH
Confidence 69999999994 222 2346677899999999999999997653
No 245
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=91.39 E-value=0.3 Score=43.76 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=38.9
Q ss_pred CCccEEEEcCCccchH---------------hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523 281 SVYDLIILPGGVAGAE---------------RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK 330 (405)
Q Consensus 281 ~~~D~livpgG~~~~~---------------~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~ 330 (405)
+..|.|+++||. +.. +..+|.--+..|+++.++++||.+||-|..+|.-
T Consensus 59 ~~iDgliltGg~-nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNV 122 (243)
T COG2071 59 DLIDGLILTGGS-NVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNV 122 (243)
T ss_pred hhccEEEecCCC-cCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHH
Confidence 557999999993 221 1235667889999999999999999999998853
No 246
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=90.88 E-value=0.68 Score=40.73 Aligned_cols=96 Identities=14% Similarity=0.169 Sum_probs=69.2
Q ss_pred cCEEEEEeCCCCcHHH---HHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCc--CCCCccEEEEcCCccc
Q 015523 220 MPRVLIPIANGSEEIE---IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA--AESVYDLIILPGGVAG 294 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e---~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~--~~~~~D~livpgG~~~ 294 (405)
.++|+++-+-+..... +....++|.+.|+.+.-++.... ..+++ -..+.|+|+|.|| +
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~---------------~~~~Ie~~l~~~d~IyVgGG--N 94 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP---------------PLAAIENKLMKADIIYVGGG--N 94 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC---------------CHHHHHHhhhhccEEEECCc--h
Confidence 5688888765543333 45678899999988887766553 12222 0144799999998 5
Q ss_pred hHhh---hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC
Q 015523 295 AERL---QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 332 (405)
Q Consensus 295 ~~~~---~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG 332 (405)
+..+ .+..-+.+.|++..++|.+.++..+|+.+-...+
T Consensus 95 TF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~p~I 135 (224)
T COG3340 95 TFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAGPTI 135 (224)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeecCce
Confidence 6554 4566789999999999999999999988776554
No 247
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=90.68 E-value=0.81 Score=43.03 Aligned_cols=105 Identities=12% Similarity=0.132 Sum_probs=58.3
Q ss_pred CCCCcEEEEEe-cCCCchhhHHHHHHHHHhc--CCEEEEEecCCCc--eeEeccCcEEecCcccCCCCCCcccEEEEcCC
Q 015523 14 PSFALNVLVPV-GFGTEEMEAVIIVDVLRRA--GAQVTMASVEPQL--EVEASSGTRLVADTSISNCSHQVFDLIALPGG 88 (405)
Q Consensus 14 ~~~~~ki~ill-~~g~~~~e~~~~~~~l~~~--~~~v~~vs~~~~~--~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg 88 (405)
..++.||+||= +++-...| .-+...|... .++++++.+..-. ....++=.++. .+++++....||++||.|.
T Consensus 32 dirpl~i~ilNlMp~k~~TE-~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y--~~~~~i~~~~~DG~IITGA 108 (302)
T PRK05368 32 DIRPLKILILNLMPKKIETE-TQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFY--CTFEDIKDEKFDGLIITGA 108 (302)
T ss_pred cCCCccEEEEeCCCCCchHH-HHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhc--cCHHHhccCCCCEEEEcCC
Confidence 45688999984 66666666 3445555444 3556666554410 01111111111 2344555568999999998
Q ss_pred chhhhcccc------ChHHHHHHHHHHHcCCEEEEEccchHH
Q 015523 89 MPGSVRLRD------CEILKKITSKQAEEKRLYGAICAAPAV 124 (405)
Q Consensus 89 ~~~~~~~~~------~~~~~~~l~~~~~~~~~i~aic~g~~~ 124 (405)
......+.+ -.++++|++ ++.+++.++|-|...
T Consensus 109 p~e~~~fedv~YW~El~~i~~w~~---~~~~s~LgICwGaQa 147 (302)
T PRK05368 109 PVEQLPFEDVDYWDELKEILDWAK---THVTSTLFICWAAQA 147 (302)
T ss_pred CCCCccCCCCchHHHHHHHHHHHH---HcCCCEEEEcHHHHH
Confidence 422111212 234455555 468999999997553
No 248
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=90.07 E-value=0.42 Score=43.96 Aligned_cols=50 Identities=20% Similarity=0.128 Sum_probs=34.9
Q ss_pred cccEEEEcCCchhhh-------------ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 79 VFDLIALPGGMPGSV-------------RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 79 ~~d~liipgg~~~~~-------------~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
.+|.++++||..+.. ....+...+++++.++++++||.+||-|-. +|+.+
T Consensus 61 ~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Q-llnva 123 (254)
T PRK11366 61 KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQ-ELVVA 123 (254)
T ss_pred hCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence 489999999831221 001123457899999999999999999766 46543
No 249
>PRK00074 guaA GMP synthase; Reviewed
Probab=89.75 E-value=1.2 Score=45.39 Aligned_cols=87 Identities=16% Similarity=0.046 Sum_probs=52.6
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcccc
Q 015523 18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD 97 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~ 97 (405)
.+|+||=+- ..-...+...+++.|...+++..+.. . ..+.+. ++|.+|+|||. ....-..
T Consensus 4 ~~i~vlD~G---sq~~~li~r~lrelg~~~~v~p~~~~--~-----------~~l~~~---~~dgIIlsGGp-~sv~~~~ 63 (511)
T PRK00074 4 DKILILDFG---SQYTQLIARRVRELGVYSEIVPYDIS--A-----------EEIRAF---NPKGIILSGGP-ASVYEEG 63 (511)
T ss_pred CEEEEEECC---CCcHHHHHHHHHHCCCeEEEEECCCC--H-----------HHHhcc---CCCEEEECCCC-cccccCC
Confidence 467777552 22234457888888998888864432 0 112222 47999999994 3211111
Q ss_pred ChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 98 CEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 98 ~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
.+.+ .+..++.++||.+||.|-. +|+.
T Consensus 64 ~p~~---~~~i~~~~~PvLGIC~G~Q-lLa~ 90 (511)
T PRK00074 64 APRA---DPEIFELGVPVLGICYGMQ-LMAH 90 (511)
T ss_pred Cccc---cHHHHhCCCCEEEECHHHH-HHHH
Confidence 2223 3445667999999999755 5665
No 250
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=89.67 E-value=1.1 Score=45.92 Aligned_cols=89 Identities=15% Similarity=0.044 Sum_probs=52.8
Q ss_pred EecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHH
Q 015523 23 PVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILK 102 (405)
Q Consensus 23 ll~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~ 102 (405)
|+.|+++... ..+.+.|++.++++.++..+- + .+..++++...++|.||+-||...+.+. ...
T Consensus 5 LiIDn~dsft-~nl~~~lr~~g~~v~V~~~~~--~----------~~~~~~~l~~~~~~~IIlSpGPg~p~d~----~~~ 67 (531)
T PRK09522 5 LLLDNIDSFT-YNLADQLRSNGHNVVIYRNHI--P----------AQTLIERLATMSNPVLMLSPGPGVPSEA----GCM 67 (531)
T ss_pred EEEeCCChHH-HHHHHHHHHCCCCEEEEECCC--C----------CccCHHHHHhcCcCEEEEcCCCCChhhC----CCC
Confidence 4445444433 557888888899888887442 1 1112223322357899998884333222 222
Q ss_pred HHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 103 KITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 103 ~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
.++.+.+..++||.+||-|-. +|+.+
T Consensus 68 ~~i~~~~~~~iPILGIClG~Q-lLa~a 93 (531)
T PRK09522 68 PELLTRLRGKLPIIGICLGHQ-AIVEA 93 (531)
T ss_pred HHHHHHHhcCCCEEEEcHHHH-HHHHh
Confidence 334444567899999999766 56653
No 251
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=89.50 E-value=0.66 Score=47.58 Aligned_cols=87 Identities=9% Similarity=0.042 Sum_probs=53.9
Q ss_pred EEecCCCchhhHHHHHHHHHhcCCE-EEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChH
Q 015523 22 VPVGFGTEEMEAVIIVDVLRRAGAQ-VTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEI 100 (405)
Q Consensus 22 ill~~g~~~~e~~~~~~~l~~~~~~-v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~ 100 (405)
||+.|+++... ..+.+.|++.+.+ +.++.++.. . +++.....+|.||+.||...+. ++..
T Consensus 2 il~idn~dsft-~nl~~~l~~~g~~~v~~~~~~~~-~--------------~~~~~~~~~d~vIlsgGP~~p~---~~~~ 62 (534)
T PRK14607 2 IILIDNYDSFT-YNIYQYIGELGPEEIEVVRNDEI-T--------------IEEIEALNPSHIVISPGPGRPE---EAGI 62 (534)
T ss_pred EEEEECchhHH-HHHHHHHHHcCCCeEEEECCCCC-C--------------HHHHHhcCCCEEEECCCCCChh---hCCc
Confidence 45556655554 3467888888874 666655432 1 1222223589999999943232 2333
Q ss_pred HHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 101 LKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 101 ~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
..++++. ...+.||.+||-|-. +|+.+
T Consensus 63 ~~~li~~-~~~~~PvLGIClG~Q-lLa~a 89 (534)
T PRK14607 63 SVEVIRH-FSGKVPILGVCLGHQ-AIGYA 89 (534)
T ss_pred cHHHHHH-hhcCCCEEEEcHHHH-HHHHH
Confidence 4566665 467899999999766 56653
No 252
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=89.49 E-value=1.1 Score=39.46 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=46.6
Q ss_pred HHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc-ccC-hHHHHHHHHHHHcCC
Q 015523 36 IVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL-RDC-EILKKITSKQAEEKR 113 (405)
Q Consensus 36 ~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~-~~~-~~~~~~l~~~~~~~~ 113 (405)
+..+..+.|+.++++-.+-. +.++...||++++-||..-.-.+ .++ ..-..-|+++...++
T Consensus 26 Lr~ra~~rgi~v~i~~vsl~-----------------d~~~~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~ 88 (250)
T COG3442 26 LRQRAEKRGIKVEIVEVSLT-----------------DTFPDDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGK 88 (250)
T ss_pred ehHHHHhcCCceEEEEeecC-----------------CCCCcccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCC
Confidence 34445555666666644332 12333479999999985221111 122 344567888999999
Q ss_pred EEEEEccchHHhhhh
Q 015523 114 LYGAICAAPAVTLLP 128 (405)
Q Consensus 114 ~i~aic~g~~~~La~ 128 (405)
|+.+||.|.. +|.+
T Consensus 89 p~laiCgg~Q-lLG~ 102 (250)
T COG3442 89 PVLAICGGYQ-LLGQ 102 (250)
T ss_pred cEEEEccchh-hccc
Confidence 9999999766 4653
No 253
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=89.27 E-value=1.6 Score=43.52 Aligned_cols=136 Identities=18% Similarity=0.146 Sum_probs=77.3
Q ss_pred CCcccHHHHHHHHHHHhcChHHHHHHHHhcccccccCccccccccccccc--c-CCcCEEEEEeCCCC-cHHHHHHHHHH
Q 015523 167 RGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWF--F-DRMPRVLIPIANGS-EEIEIVTIVDI 242 (405)
Q Consensus 167 ~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~~--~-~~~~~V~il~~~g~-~~~e~~~~~~~ 242 (405)
.|-.+.++=.+.++++..|.+.--.+ .++-....+ ..+.++...++ . .+..+|+++.++.. +..++. |...
T Consensus 199 RGd~~ll~~gik~Le~~tg~~vlGv~-P~~~~~~~p---~EDS~~~~~~~~~~~~~~i~Iav~~lp~isNFtD~d-pL~~ 273 (486)
T COG1492 199 RGDESLLDPGLKWLEELTGVPVLGVL-PYLKDALRP---AEDSLSLEQPKAGGNKRAIRIAVIRLPRISNFTDFD-PLRA 273 (486)
T ss_pred CCCHHHHhhHHHHHHHhhCCeeEeec-cccccccCc---cccccCchhhcccCCCCceEEEEecCCCccccccch-hhhc
Confidence 34466777789999998777543211 122222111 12222222211 1 24578999988843 444432 2222
Q ss_pred HHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh---hhcChHHHHHHHHHhhcCCEEE
Q 015523 243 LRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER---LQKSRILKKLLKEQKVAGRIYG 319 (405)
Q Consensus 243 l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~---~~~~~~l~~~l~~~~~~~k~i~ 319 (405)
. .+.++.++.+.. ++ .+.|++|+||...-..+ +++.. +-+-|.++.+++.+|.
T Consensus 274 ~--~~v~v~~v~~~~-------------------~l--~~~dlvIlPGsk~t~~DL~~lr~~g-~d~~i~~~~~~~~~vi 329 (486)
T COG1492 274 E--PDVRVRFVKPGS-------------------DL--RDADLVILPGSKNTIADLKILREGG-MDEKILEYARKGGDVI 329 (486)
T ss_pred C--CCeEEEEeccCC-------------------CC--CCCCEEEeCCCcccHHHHHHHHHcC-HHHHHHHHHhCCCCEE
Confidence 2 467777776554 22 45899999998632222 22332 2234555667799999
Q ss_pred EEchHHHHHHHc
Q 015523 320 AVCSSPIVLHKH 331 (405)
Q Consensus 320 aic~g~~~La~a 331 (405)
+||.|-.+|.+.
T Consensus 330 GICGG~QmLG~~ 341 (486)
T COG1492 330 GICGGYQMLGRR 341 (486)
T ss_pred EEcchHHhhhhh
Confidence 999999999753
No 254
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=89.10 E-value=0.77 Score=28.63 Aligned_cols=27 Identities=26% Similarity=0.128 Sum_probs=19.4
Q ss_pred cEEEEEecC-----------CCchhhHHHHHHHHHhcC
Q 015523 18 LNVLVPVGF-----------GTEEMEAVIIVDVLRRAG 44 (405)
Q Consensus 18 ~ki~ill~~-----------g~~~~e~~~~~~~l~~~~ 44 (405)
|||+|++.. |+...|++.|+++|+++|
T Consensus 1 kkiLiV~Ts~~~~~~~~~~TG~wl~E~~hpy~~f~~aG 38 (38)
T PF13587_consen 1 KKILIVVTSHDKLGDTGRPTGFWLSELAHPYYVFTDAG 38 (38)
T ss_dssp SEEEEEE---SEECTTTEE--B-HHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCcccccCCCCcceeccHHHhhHHHHHHHCc
Confidence 467777644 788899999999999875
No 255
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=88.87 E-value=1.3 Score=43.99 Aligned_cols=88 Identities=18% Similarity=0.124 Sum_probs=52.3
Q ss_pred CCcEEEEEecCCCchhhHHHHHHHHHh-cCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523 16 FALNVLVPVGFGTEEMEAVIIVDVLRR-AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 94 (405)
Q Consensus 16 ~~~ki~ill~~g~~~~e~~~~~~~l~~-~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~ 94 (405)
+..+|+++.+|..+-..- ++.|+. .+.++.++.+.. +++ +.|++|+||-.....+
T Consensus 250 ~~i~Iav~~lp~isNFtD---~dpL~~~~~v~v~~v~~~~-------------------~l~--~~dlvIlPGsk~t~~D 305 (486)
T COG1492 250 RAIRIAVIRLPRISNFTD---FDPLRAEPDVRVRFVKPGS-------------------DLR--DADLVILPGSKNTIAD 305 (486)
T ss_pred CceEEEEecCCCcccccc---chhhhcCCCeEEEEeccCC-------------------CCC--CCCEEEeCCCcccHHH
Confidence 456888888774332222 123333 367777776554 343 4799999998532222
Q ss_pred cc--cChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 95 LR--DCEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 95 ~~--~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
+. ....+-+-+.++.+++.+|.+||.|-. +|.+
T Consensus 306 L~~lr~~g~d~~i~~~~~~~~~viGICGG~Q-mLG~ 340 (486)
T COG1492 306 LKILREGGMDEKILEYARKGGDVIGICGGYQ-MLGR 340 (486)
T ss_pred HHHHHHcCHHHHHHHHHhCCCCEEEEcchHH-hhhh
Confidence 21 222334456667778999999999633 5653
No 256
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=88.84 E-value=0.65 Score=41.62 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=31.5
Q ss_pred CCccEEEEcCCccchH---------------hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523 281 SVYDLIILPGGVAGAE---------------RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK 330 (405)
Q Consensus 281 ~~~D~livpgG~~~~~---------------~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~ 330 (405)
+..|.|++|||..+.. ...++.--+.+++.+.++++||.+||-|..+|.-
T Consensus 57 ~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv 121 (217)
T PF07722_consen 57 DRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNV 121 (217)
T ss_dssp HCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHH
T ss_pred hhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHH
Confidence 5689999999963220 1123444566777788999999999999998854
No 257
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=88.58 E-value=2.2 Score=37.92 Aligned_cols=99 Identities=16% Similarity=0.072 Sum_probs=60.6
Q ss_pred CCcEEEEEecCCCchhh-HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcc-cCCCCCCcccEEEEcCCchhh-
Q 015523 16 FALNVLVPVGFGTEEME-AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTS-ISNCSHQVFDLIALPGGMPGS- 92 (405)
Q Consensus 16 ~~~ki~ill~~g~~~~e-~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~-~~~~~~~~~d~liipgg~~~~- 92 (405)
...||+++-.......+ .....+.|++.|+++..+-.-.. ..+.. .+.+ ...|+|+++||- ..
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~-----------~~~~~~~~~l--~~ad~I~~~GG~-~~~ 93 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDT-----------ANDPDVVARL--LEADGIFVGGGN-QLR 93 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCC-----------CCCHHHHHHH--hhCCEEEEcCCc-HHH
Confidence 35688888777654333 44566788888877665532210 01111 1122 368999999993 22
Q ss_pred -hccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 93 -VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 93 -~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
........+.+.|++.++++.++++.|.| +.++.+.
T Consensus 94 ~~~~l~~t~~~~~i~~~~~~G~v~~G~SAG-A~~~~~~ 130 (210)
T cd03129 94 LLSVLRETPLLDAILKRVARGVVIGGTSAG-AAVMGET 130 (210)
T ss_pred HHHHHHhCChHHHHHHHHHcCCeEEEcCHH-HHHhhhc
Confidence 11222334666777778899999999995 5467764
No 258
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=88.47 E-value=1 Score=44.22 Aligned_cols=76 Identities=14% Similarity=0.032 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcC
Q 015523 33 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEK 112 (405)
Q Consensus 33 ~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~ 112 (405)
-..+++.|++.|+++.++..+.. ..++...++|.||+-||..++. +.+...+.+++.. .+
T Consensus 251 K~nIlr~L~~~G~~v~VvP~~~~----------------~~ei~~~~pDGIiLSnGPGDP~---~~~~~ie~ik~l~-~~ 310 (415)
T PLN02771 251 KHNILRRLASYGCKITVVPSTWP----------------ASEALKMKPDGVLFSNGPGDPS---AVPYAVETVKELL-GK 310 (415)
T ss_pred HHHHHHHHHHcCCeEEEECCCCC----------------HHHHhhcCCCEEEEcCCCCChh---HhhHHHHHHHHHH-hC
Confidence 36667788888898888854431 1122122589999999832232 3355667777665 47
Q ss_pred CEEEEEccchHHhhhhc
Q 015523 113 RLYGAICAAPAVTLLPW 129 (405)
Q Consensus 113 ~~i~aic~g~~~~La~a 129 (405)
+||.+||-|-. +|+.+
T Consensus 311 iPIlGICLGhQ-lLa~A 326 (415)
T PLN02771 311 VPVFGICMGHQ-LLGQA 326 (415)
T ss_pred CCEEEEcHHHH-HHHHh
Confidence 89999999766 56653
No 259
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=88.39 E-value=1.9 Score=37.53 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=59.7
Q ss_pred CcEEEEEecCCCc---hhhHHHHHHHHH----hcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCc
Q 015523 17 ALNVLVPVGFGTE---EMEAVIIVDVLR----RAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGM 89 (405)
Q Consensus 17 ~~ki~ill~~g~~---~~e~~~~~~~l~----~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~ 89 (405)
-+|+++++.+--+ -..+....++|. ..|..+++.-.-.+ ..|+. +|++ .||.++|.|..
T Consensus 4 ~kr~Alf~at~dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~g----------efP~~--~Dl~--ky~gfvIsGS~ 69 (245)
T KOG3179|consen 4 QKRIALFLATPDSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDG----------EFPQE--EDLE--KYDGFVISGSK 69 (245)
T ss_pred ceeEEEEecCCchhhhhhhhcCHHHHHHHHhcccCceeEEEEEecC----------CCCCh--hhhh--hhceEEEeCCc
Confidence 4689999866322 233444555554 44666766654443 12222 3443 69999999974
Q ss_pred hhhhccccC---hHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523 90 PGSVRLRDC---EILKKITSKQAEEKRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 90 ~~~~~~~~~---~~~~~~l~~~~~~~~~i~aic~g~~~~La~a 129 (405)
..+ ..+. .++..++++.....+.|.+||-|-. ++|++
T Consensus 70 ~dA--f~d~dWI~KLcs~~kkld~mkkkvlGICFGHQ-iiara 109 (245)
T KOG3179|consen 70 HDA--FSDADWIKKLCSFVKKLDFMKKKVLGICFGHQ-IIARA 109 (245)
T ss_pred ccc--cccchHHHHHHHHHHHHHhhccceEEEeccHH-HHHHh
Confidence 322 2233 2466777777788899999999877 56653
No 260
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=88.19 E-value=3.7 Score=36.20 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=62.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCC---CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAK---VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 297 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~---~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~ 297 (405)
|+|.|..-+|.+...+-..++.|+.-- |.+..+ +++ .+..+. +.+ .--+|++|||..-...
T Consensus 1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V--~~~---------~Li~Ep-W~~----~T~lLV~pGGaDlpY~ 64 (253)
T COG4285 1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRV--DAQ---------FLIKEP-WEE----TTLLLVFPGGADLPYV 64 (253)
T ss_pred CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEe--eeh---------eeecCc-chh----ceEEEEecCCCCchHH
Confidence 467777778999999999999888653 344443 333 222222 443 3468899999633333
Q ss_pred hhcChHHHHHHHHHhhcCCEEEEEchHHHH
Q 015523 298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIV 327 (405)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~ 327 (405)
..-++..-+.|..+.++|....+||+|..+
T Consensus 65 ~~l~g~g~a~i~~yvk~GG~fLGiCAG~YF 94 (253)
T COG4285 65 QVLQGLGTARIKNYVKEGGNFLGICAGGYF 94 (253)
T ss_pred HHhcchhhhhHHHHHhcCCeEEEEeccccc
Confidence 344566677788888999999999999865
No 261
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=87.84 E-value=0.36 Score=41.57 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhCC--CeEEEEeecCCceeecCCCcEEe-eCCCccCcCCCCccEEEEcCCccchHhhhcCh-----HH
Q 015523 233 EIEIVTIVDILRRAK--VDVVVASVERSTQIVASQGVKII-ADKSISDAAESVYDLIILPGGVAGAERLQKSR-----IL 304 (405)
Q Consensus 233 ~~e~~~~~~~l~~~~--~~v~~vs~~~~~~v~~~~g~~v~-~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~-----~l 304 (405)
..| ..+...|.... .+++++-+..- ..+...--.+. -=.+++++....||++||.|... ..+.-.+ ++
T Consensus 12 ~TE-~qf~rlL~~~~~qv~v~~~~~~~h-~~~~~~~~~l~~~Y~~~~~i~~~~yDGlIITGApv--e~~~fe~v~Yw~El 87 (175)
T cd03131 12 QTE-RQFLRLLGNTPLQVEITFIRPSSH-SSKNTPPEHVNRFYETFDDIRDAKFDGLIVTGAPV--EHLPFEQVDYWEEL 87 (175)
T ss_pred HHH-HHHHHHHhcCCccceEEEEecCCC-CCCCCCHHHHHHhccCHHHccccCCCEEEEeCCCc--ccCCccccchHHHH
Confidence 455 34666665554 55666666553 11110000000 01255666668999999999853 2222222 56
Q ss_pred HHHHHHHhhcCCEEEEEchHHHHHH
Q 015523 305 KKLLKEQKVAGRIYGAVCSSPIVLH 329 (405)
Q Consensus 305 ~~~l~~~~~~~k~i~aic~g~~~La 329 (405)
.+.+.....++.....+|-|+.+..
T Consensus 88 ~~i~dwa~~~v~stl~iCWgaqaal 112 (175)
T cd03131 88 TEILDWAKTHVTSTLFSCWAAMAAL 112 (175)
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHH
Confidence 6666666688999999999999643
No 262
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.62 E-value=3.9 Score=38.67 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=57.1
Q ss_pred CCcEEEEEecCCCch--hhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523 16 FALNVLVPVGFGTEE--MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 93 (405)
Q Consensus 16 ~~~ki~ill~~g~~~--~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~ 93 (405)
+++||+++..++-.. ..+..+.+.|++.++++.+...... .. +.... .... ...+|.+++.||
T Consensus 2 ~~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~-~~----~~~~~----~~~~-~~~~d~vi~~GG----- 66 (305)
T PRK02645 2 QLKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPK-DN----PYPVF----LASA-SELIDLAIVLGG----- 66 (305)
T ss_pred CcCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchh-hc----cccch----hhcc-ccCcCEEEEECC-----
Confidence 467899998876433 3456667788888999877653331 11 11110 0111 135899999999
Q ss_pred ccccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 94 RLRDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
|..+++.++.....+.|++++-.|
T Consensus 67 ----DGT~l~~~~~~~~~~~pv~gin~~ 90 (305)
T PRK02645 67 ----DGTVLAAARHLAPHDIPILSVNVG 90 (305)
T ss_pred ----cHHHHHHHHHhccCCCCEEEEecC
Confidence 456777788777789999999873
No 263
>PLN02327 CTP synthase
Probab=87.53 E-value=3.1 Score=42.33 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=55.6
Q ss_pred CCcEEEEEe-cCCCchhhHHHHHHHHHhc----CCEEEEEecCCCceeEeccCcEEecC---cccCCCCCCcccEEEEcC
Q 015523 16 FALNVLVPV-GFGTEEMEAVIIVDVLRRA----GAQVTMASVEPQLEVEASSGTRLVAD---TSISNCSHQVFDLIALPG 87 (405)
Q Consensus 16 ~~~ki~ill-~~g~~~~e~~~~~~~l~~~----~~~v~~vs~~~~~~v~~~~g~~v~~~---~~~~~~~~~~~d~liipg 87 (405)
...+||++- |-... ..+..+.+.|+-+ +.++++...+.. .+.. .+..-.|+ ...+.+ .++|.|++||
T Consensus 296 ~~v~IalVGKY~~l~-DAY~Si~eAL~hA~~~~~~~v~i~wI~se-~l~~-~~~~~~~~~y~~~~~~L--~~~DGIvvpG 370 (557)
T PLN02327 296 EPVRIAMVGKYTGLS-DSYLSVLKALLHASVACSRKLVIDWVAAS-DLED-ETAKETPDAYAAAWKLL--KGADGILVPG 370 (557)
T ss_pred CceEEEEEecccCCc-HhHHHHHHHHHHHHHHcCCeeEEEEEchh-hcCC-cccccccchhhhhHHhh--ccCCEEEeCC
Confidence 456788775 22222 2345566666544 556666655443 2221 11100110 011222 4799999999
Q ss_pred CchhhhccccChHHHHHHHHHHHcCCEEEEEccchHH
Q 015523 88 GMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAV 124 (405)
Q Consensus 88 g~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~ 124 (405)
|. +.. ..+.....++.+.++++|+.+||.|-.+
T Consensus 371 Gf-G~~---~~~G~i~ai~~are~~iP~LGIClGmQl 403 (557)
T PLN02327 371 GF-GDR---GVEGKILAAKYARENKVPYLGICLGMQI 403 (557)
T ss_pred CC-CCc---ccccHHHHHHHHHHcCCCEEEEcHHHHH
Confidence 94 222 2234456778888899999999997553
No 264
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=87.44 E-value=3 Score=42.21 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=54.6
Q ss_pred CCCcEEEEEe-cCCCchhhHHHHHHHHHhcCC----EEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCc
Q 015523 15 SFALNVLVPV-GFGTEEMEAVIIVDVLRRAGA----QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGM 89 (405)
Q Consensus 15 ~~~~ki~ill-~~g~~~~e~~~~~~~l~~~~~----~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~ 89 (405)
.+..+||++- |-+. ...+..+.+.|..+++ .+.+...+.. .+... ..+.+ .++|.|++|||.
T Consensus 287 ~~~v~IalVGKY~~~-~daY~SI~eAL~~ag~~~~~~V~~~~i~se-~i~~~---------~~~~L--~~~dGIiLpGG~ 353 (525)
T TIGR00337 287 KHEVTIGIVGKYVEL-KDSYLSVIEALKHAGAKLDTKVNIKWIDSE-DLEEE---------GAEFL--KGVDGILVPGGF 353 (525)
T ss_pred CCCcEEEEEeCCcCC-HHHHHHHHHHHHhCccccCCEEEEEEecHH-Hhhhh---------hhhhh--cCCCEEEeCCCC
Confidence 3456888876 2222 2345677888887765 3443333221 11110 00112 358999999994
Q ss_pred hhhhccccChHHHHHHHHHHHcCCEEEEEccchH
Q 015523 90 PGSVRLRDCEILKKITSKQAEEKRLYGAICAAPA 123 (405)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~ 123 (405)
+.. ..+.....++.+.+++.|+.+||.|-.
T Consensus 354 -G~~---~~~g~i~ai~~a~e~~iP~LGIClG~Q 383 (525)
T TIGR00337 354 -GER---GVEGKILAIKYARENNIPFLGICLGMQ 383 (525)
T ss_pred -CCh---hhcChHHHHHHHHHcCCCEEEEcHHHH
Confidence 222 234455678888889999999999755
No 265
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=86.89 E-value=0.52 Score=39.72 Aligned_cols=81 Identities=17% Similarity=0.112 Sum_probs=50.2
Q ss_pred HHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh-hhccccChHHHHHHHHHHHcCC
Q 015523 35 IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-SVRLRDCEILKKITSKQAEEKR 113 (405)
Q Consensus 35 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~-~~~~~~~~~~~~~l~~~~~~~~ 113 (405)
...++|++.|++++.+..... ... ...+.+ ...|+|++-||-.. .........+.+.|++.+++|+
T Consensus 4 ~~~~~f~~~g~~v~~l~~~~~-~~~----------~~~~~i--~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~ 70 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQLDLSDR-NDA----------DILEAI--READAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGG 70 (154)
T ss_dssp HHHHHHHHCT-EEEECCCTSC-GHH----------HHHHHH--HHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCEEEEEeccCC-ChH----------HHHHHH--HhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCC
Confidence 457888999988877765542 000 111222 25899999999311 1222345678899999999999
Q ss_pred EEEEEccchHHhhhhc
Q 015523 114 LYGAICAAPAVTLLPW 129 (405)
Q Consensus 114 ~i~aic~g~~~~La~a 129 (405)
++++.+.| +.++...
T Consensus 71 vi~G~SAG-A~i~~~~ 85 (154)
T PF03575_consen 71 VIIGTSAG-AMILGPS 85 (154)
T ss_dssp EEEEETHH-HHCTSSB
T ss_pred EEEEEChH-HhhccCc
Confidence 99999884 6455443
No 266
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=86.22 E-value=1.8 Score=40.67 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=37.8
Q ss_pred CCccEEEEcC-Cc-cchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523 281 SVYDLIILPG-GV-AGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK 330 (405)
Q Consensus 281 ~~~D~livpg-G~-~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~ 330 (405)
...|-+|+|| |. +.........-+.+-|++....||++.+||-|..+|-.
T Consensus 38 ~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF~ 89 (541)
T KOG0623|consen 38 LNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESGKPFMGICVGLQALFD 89 (541)
T ss_pred ccCceEeecCcccchHHHHHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHhc
Confidence 5678999998 21 11223345667888899999999999999999998853
No 267
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=86.08 E-value=1.7 Score=27.07 Aligned_cols=19 Identities=16% Similarity=0.020 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHHHhCC
Q 015523 229 NGSEEIEIVTIVDILRRAK 247 (405)
Q Consensus 229 ~g~~~~e~~~~~~~l~~~~ 247 (405)
.|+...|++.|+++|.++|
T Consensus 20 TG~wl~E~~hpy~~f~~aG 38 (38)
T PF13587_consen 20 TGFWLSELAHPYYVFTDAG 38 (38)
T ss_dssp --B-HHHHHHHHHHHHHTT
T ss_pred ceeccHHHhhHHHHHHHCc
Confidence 5899999999999999876
No 268
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=86.05 E-value=2.6 Score=45.66 Aligned_cols=89 Identities=18% Similarity=0.137 Sum_probs=54.5
Q ss_pred EEeCCCCcHHHHHHHHHHHHhC-CCeEEEEeecCCceeecCCCcEEeeCCCccCcC-----CCCccEEEEcCCccchHhh
Q 015523 225 IPIANGSEEIEIVTIVDILRRA-KVDVVVASVERSTQIVASQGVKIIADKSISDAA-----ESVYDLIILPGGVAGAERL 298 (405)
Q Consensus 225 il~~~g~~~~e~~~~~~~l~~~-~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~-----~~~~D~livpgG~~~~~~~ 298 (405)
+|+.|.++..-. .+++.|... |..+.++-.+.- .++++. ...||.||+-+|.+.+...
T Consensus 84 iLlIDnyDSfTy-NL~~~L~~~~g~~~~Vv~nd~~---------------~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~ 147 (918)
T PLN02889 84 TLLIDNYDSYTY-NIYQELSIVNGVPPVVVRNDEW---------------TWEEVYHYLYEEKAFDNIVISPGPGSPTCP 147 (918)
T ss_pred EEEEeCCCchHH-HHHHHHHHhcCCCEEEEeCCCC---------------CHHHHHhhhhcccCCCEEEECCCCCCccch
Confidence 455466655553 366667666 777766654421 222221 1468999998887544322
Q ss_pred hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523 299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331 (405)
Q Consensus 299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a 331 (405)
.+.....+.|.++ .+.||.+||-|-.+|+.+
T Consensus 148 ~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~ 178 (918)
T PLN02889 148 ADIGICLRLLLEC--RDIPILGVCLGHQALGYV 178 (918)
T ss_pred HHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHh
Confidence 2223345666543 579999999999998765
No 269
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=85.51 E-value=11 Score=40.36 Aligned_cols=143 Identities=12% Similarity=0.138 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcChHHHHHHHHh-cccccccCccccccccc---ccc--c-cCCcCEEEEEeCCCC-cHHHHHHHHHHHH
Q 015523 173 FEFALCLVEQLFGESVAKEIGEL-LLMHNADNSLKKEEFNE---VEW--F-FDRMPRVLIPIANGS-EEIEIVTIVDILR 244 (405)
Q Consensus 173 ~~~~l~ii~~~~g~~~a~~~a~~-l~~~~~~~~~~~~~~~~---~~~--~-~~~~~~V~il~~~g~-~~~e~~~~~~~l~ 244 (405)
++..-+=++++.-.....++.+. +-.++.+++. ..|+| ... . ....+||+||--+|. .+.|++ ..|.
T Consensus 1006 We~tsy~l~klq~npecae~e~~~i~~~~~p~~~--l~~~P~~~~~~~~~l~s~~PkVAilREeGvNg~rEMa---~af~ 1080 (1320)
T KOG1907|consen 1006 WELTSYELQKLQDNPECAEVERECIKDNYDPQYD--LYYNPAFIHNEQLFLSSTAPKVAILREEGVNGDREMA---AAFY 1080 (1320)
T ss_pred HHHhHHHHHHHhhCHHHHHHHHhhcccccCCCCc--eeeCchhhhHHHHhhhcCCCceEEeeccccccHHHHH---HHHH
Confidence 44455556666554444444433 3334444533 33333 111 1 234579999999998 466654 5677
Q ss_pred hCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccc----------hHhhhcChHHHHHHHHHh-h
Q 015523 245 RAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG----------AERLQKSRILKKLLKEQK-V 313 (405)
Q Consensus 245 ~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~----------~~~~~~~~~l~~~l~~~~-~ 313 (405)
.+||+..=++-+. . +. .....++|-.|+.+||+.- +..+..++.++.-..+|+ +
T Consensus 1081 ~AgF~~~DVtmtD--l--------L~-----G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~QF~~F~~R 1145 (1320)
T KOG1907|consen 1081 AAGFETVDVTMTD--L--------LA-----GRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESVRSQFEAFFNR 1145 (1320)
T ss_pred HcCCceeeeeeeh--h--------hc-----CceeHhHhcceeeecCcchHhhhccccchhhheeeChhHHHHHHHHhcC
Confidence 7999877665543 0 00 1122356788888887742 223466888888888876 5
Q ss_pred cCCEEEEEchHHHHHHHcCCCC
Q 015523 314 AGRIYGAVCSSPIVLHKHGLLK 335 (405)
Q Consensus 314 ~~k~i~aic~g~~~La~aGlL~ 335 (405)
+...=.+||+|-.++++.|.+-
T Consensus 1146 ~DtFslGiCNGCQlms~Lg~i~ 1167 (1320)
T KOG1907|consen 1146 QDTFSLGICNGCQLMSRLGWIG 1167 (1320)
T ss_pred CCceeeecccHhHHHHHhcccC
Confidence 6778889999999999999654
No 270
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=84.60 E-value=4.2 Score=37.28 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=61.1
Q ss_pred cEEEEEecCCCchhh-HHHHHHHHHhcCC-EEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCch-hhhc
Q 015523 18 LNVLVPVGFGTEEME-AVIIVDVLRRAGA-QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP-GSVR 94 (405)
Q Consensus 18 ~ki~ill~~g~~~~e-~~~~~~~l~~~~~-~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~-~~~~ 94 (405)
.||+|+-.-.....+ .....+.|++.|+ .+.++..... . . ...+.....+ ...|+|++-||-. ....
T Consensus 29 ~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r-~-~------a~~~~~~~~l--~~ad~I~~~GGnq~~l~~ 98 (250)
T TIGR02069 29 AIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVRER-E-D------ASDENAIALL--SNATGIFFTGGDQLRITS 98 (250)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCCh-H-H------ccCHHHHHHH--hhCCEEEEeCCCHHHHHH
Confidence 489998865444333 4456678888887 4666654321 0 0 0000111122 3589999999931 1122
Q ss_pred cccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
......+.+.|++.+++|.++++...| +.+++.
T Consensus 99 ~l~~t~l~~~l~~~~~~G~vi~G~SAG-A~i~~~ 131 (250)
T TIGR02069 99 LLGDTPLLDRLRKRVHEGIILGGTSAG-AAVMSD 131 (250)
T ss_pred HHcCCcHHHHHHHHHHcCCeEEEccHH-HHhccc
Confidence 235667888999999999999999995 535543
No 271
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=84.01 E-value=1.5 Score=40.74 Aligned_cols=78 Identities=18% Similarity=0.119 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCC-CCCCcccEEEEcCCchhhhccccChHHHHHHHHHH---H
Q 015523 35 IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISN-CSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQA---E 110 (405)
Q Consensus 35 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~-~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~---~ 110 (405)
..++.+.++|..|..+-.+.. ...+++ + ..+|.|++|||..........+....+++.+. +
T Consensus 24 ~Yv~~l~~aG~~vvpi~~~~~-------------~~~l~~~l--~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~ 88 (273)
T cd01747 24 SYVKFLESAGARVVPIWINES-------------EEYYDKLF--KSINGILFPGGAVDIDTSGYARTAKIIYNLALERND 88 (273)
T ss_pred HHHHHHHHCCCeEEEEEeCCc-------------HHHHHHHH--hhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhh
Confidence 466777888887766643321 012222 2 35899999999322211111223334444444 3
Q ss_pred cC--CEEEEEccchHHhhhh
Q 015523 111 EK--RLYGAICAAPAVTLLP 128 (405)
Q Consensus 111 ~~--~~i~aic~g~~~~La~ 128 (405)
.| .||.++|-|.. +|+.
T Consensus 89 ~g~~~Pv~GiClG~Q-lL~~ 107 (273)
T cd01747 89 AGDYFPVWGTCLGFE-LLTY 107 (273)
T ss_pred cCCCCcEEEEcHHHH-HHHH
Confidence 34 79999999755 4554
No 272
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=83.22 E-value=8 Score=34.17 Aligned_cols=90 Identities=22% Similarity=0.170 Sum_probs=58.7
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHhc---CCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523 18 LNVLVPVGFGTEEMEAVIIVDVLRRA---GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 94 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~~~~~~l~~~---~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~ 94 (405)
|+|.|.--.|.+...+...+..|+.- -+.+..|. ++ . +.. ..+.+ .--.|++|||. +...
T Consensus 1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~--~~-~--------Li~-EpW~~----~T~lLV~pGGa-DlpY 63 (253)
T COG4285 1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVD--AQ-F--------LIK-EPWEE----TTLLLVFPGGA-DLPY 63 (253)
T ss_pred CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEee--eh-e--------eec-Ccchh----ceEEEEecCCC-CchH
Confidence 47888888899999999999888853 23555543 22 1 111 11222 35789999993 2221
Q ss_pred -cccChHHHHHHHHHHHcCCEEEEEccchHH
Q 015523 95 -LRDCEILKKITSKQAEEKRLYGAICAAPAV 124 (405)
Q Consensus 95 -~~~~~~~~~~l~~~~~~~~~i~aic~g~~~ 124 (405)
-.-++..-+-+....++|....+||.|+.|
T Consensus 64 ~~~l~g~g~a~i~~yvk~GG~fLGiCAG~YF 94 (253)
T COG4285 64 VQVLQGLGTARIKNYVKEGGNFLGICAGGYF 94 (253)
T ss_pred HHHhcchhhhhHHHHHhcCCeEEEEeccccc
Confidence 122344456677788999999999998765
No 273
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.72 E-value=9.1 Score=36.23 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=60.0
Q ss_pred CcCEEEEEeCCCCcH--HHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523 219 RMPRVLIPIANGSEE--IEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 296 (405)
Q Consensus 219 ~~~~V~il~~~g~~~--~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~ 296 (405)
+++||+++.-++-.. ..+..+.+.|.+.|+++.+...... .. +.. .+.......+|++++.||
T Consensus 2 ~~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~-~~----~~~-----~~~~~~~~~~d~vi~~GG----- 66 (305)
T PRK02645 2 QLKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPK-DN----PYP-----VFLASASELIDLAIVLGG----- 66 (305)
T ss_pred CcCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchh-hc----ccc-----chhhccccCcCEEEEECC-----
Confidence 357899998876533 3355667778888998777554332 11 111 011111246899999998
Q ss_pred hhhcChHHHHHHHHHhhcCCEEEEEch-HHH-HHH
Q 015523 297 RLQKSRILKKLLKEQKVAGRIYGAVCS-SPI-VLH 329 (405)
Q Consensus 297 ~~~~~~~l~~~l~~~~~~~k~i~aic~-g~~-~La 329 (405)
|..+++.++.+...+.++.+|-. |.. +|+
T Consensus 67 ----DGT~l~~~~~~~~~~~pv~gin~~G~lGFL~ 97 (305)
T PRK02645 67 ----DGTVLAAARHLAPHDIPILSVNVGGHLGFLT 97 (305)
T ss_pred ----cHHHHHHHHHhccCCCCEEEEecCCcceEec
Confidence 44777888888778999999987 654 444
No 274
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=82.24 E-value=1.1 Score=42.47 Aligned_cols=57 Identities=21% Similarity=0.059 Sum_probs=41.3
Q ss_pred cCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 68 ADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 68 ~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
.+.+.+++-.-++|.|++.-|..++ ..-+..++.+++.....+||.+||-|-. +|+.
T Consensus 209 ~~t~~eeIl~~~pDGiflSNGPGDP---~~~~~~i~~ik~l~~~~iPifGICLGHQ-llal 265 (368)
T COG0505 209 ADTSAEEILALNPDGIFLSNGPGDP---APLDYAIETIKELLGTKIPIFGICLGHQ-LLAL 265 (368)
T ss_pred CCCCHHHHHhhCCCEEEEeCCCCCh---hHHHHHHHHHHHHhccCCCeEEEcHHHH-HHHH
Confidence 3444555433479999998884333 2346788899999999899999999877 5664
No 275
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.23 E-value=9 Score=35.69 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=54.7
Q ss_pred cEEEEEecCCCc--hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523 18 LNVLVPVGFGTE--EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 95 (405)
Q Consensus 18 ~ki~ill~~g~~--~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~ 95 (405)
|||+|+...+-. ...+..+.++|++.++++.+...... .... .. ..........++|++|+.||
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~-~~~~---~~---~~~~~~~~~~~~d~vi~iGG------- 66 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYE-HLPE---FS---EEDVLPLEEMDVDFIIAIGG------- 66 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hcCc---cc---ccccccccccCCCEEEEEeC-------
Confidence 589999876643 33455677788899999888643221 1100 00 00111222236899999999
Q ss_pred ccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 96 RDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
|..+++.++ .+..+.||.++-.|
T Consensus 67 --DGTlL~a~~-~~~~~~pi~gIn~G 89 (277)
T PRK03708 67 --DGTILRIEH-KTKKDIPILGINMG 89 (277)
T ss_pred --cHHHHHHHH-hcCCCCeEEEEeCC
Confidence 356667777 67778999998874
No 276
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=81.49 E-value=2.7 Score=37.82 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=33.6
Q ss_pred cccEEEEcCCchhhhc---------------cccChHHHHHHHHHHHcCCEEEEEccchHH
Q 015523 79 VFDLIALPGGMPGSVR---------------LRDCEILKKITSKQAEEKRLYGAICAAPAV 124 (405)
Q Consensus 79 ~~d~liipgg~~~~~~---------------~~~~~~~~~~l~~~~~~~~~i~aic~g~~~ 124 (405)
..|.|+++||. +... ...|.--+..|+++.++++||.+||=|..+
T Consensus 60 ~iDgliltGg~-nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~Ql 119 (243)
T COG2071 60 LIDGLILTGGS-NVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQL 119 (243)
T ss_pred hccEEEecCCC-cCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 57999999993 2111 123445678999999999999999997553
No 277
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.29 E-value=12 Score=34.96 Aligned_cols=89 Identities=16% Similarity=0.138 Sum_probs=56.2
Q ss_pred CEEEEEeCCCC--cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523 221 PRVLIPIANGS--EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 298 (405)
Q Consensus 221 ~~V~il~~~g~--~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~ 298 (405)
|||+|+.-.+- ....+..+.+.|...|+++.+...... .... .. ...+.+....++|++++.||
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~-~~~~---~~---~~~~~~~~~~~~d~vi~iGG------- 66 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYE-HLPE---FS---EEDVLPLEEMDVDFIIAIGG------- 66 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hcCc---cc---ccccccccccCCCEEEEEeC-------
Confidence 57899877664 333355667778899999888643221 1100 00 00111222246899999998
Q ss_pred hcChHHHHHHHHHhhcCCEEEEEchHHH
Q 015523 299 QKSRILKKLLKEQKVAGRIYGAVCSSPI 326 (405)
Q Consensus 299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~ 326 (405)
|..+++.++ ....+.+|.++-.|..
T Consensus 67 --DGTlL~a~~-~~~~~~pi~gIn~G~l 91 (277)
T PRK03708 67 --DGTILRIEH-KTKKDIPILGINMGTL 91 (277)
T ss_pred --cHHHHHHHH-hcCCCCeEEEEeCCCC
Confidence 446777778 7777899999988874
No 278
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=80.92 E-value=4.5 Score=35.73 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=60.8
Q ss_pred CcEEEEEecCCCchhh---HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523 17 ALNVLVPVGFGTEEME---AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 93 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e---~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~ 93 (405)
.+||+++-+-+.+... .....++|...|+.+.-+..... +. ..+++.- .+-|+|+|-|| +..
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~-~~-----------~~Ie~~l-~~~d~IyVgGG--NTF 96 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP-PL-----------AAIENKL-MKADIIYVGGG--NTF 96 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC-CH-----------HHHHHhh-hhccEEEECCc--hHH
Confidence 4589999877655443 34456777777887777765543 11 1112111 24799999998 444
Q ss_pred cc---ccChHHHHHHHHHHHcCCEEEEEccchH
Q 015523 94 RL---RDCEILKKITSKQAEEKRLYGAICAAPA 123 (405)
Q Consensus 94 ~~---~~~~~~~~~l~~~~~~~~~i~aic~g~~ 123 (405)
.+ .....+.+.|++.+++|++.++..+| +
T Consensus 97 ~LL~~lke~gld~iIr~~vk~G~~YiG~SAG-A 128 (224)
T COG3340 97 NLLQELKETGLDDIIRERVKAGTPYIGWSAG-A 128 (224)
T ss_pred HHHHHHHHhCcHHHHHHHHHcCCceEEeccC-c
Confidence 43 23456788999999999999999885 5
No 279
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=80.76 E-value=7.4 Score=41.61 Aligned_cols=46 Identities=24% Similarity=0.134 Sum_probs=29.5
Q ss_pred cccEEEEcCCchhhhccccChHHHHHHHHHHHc----CCEEEEEccchHHhhhhc
Q 015523 79 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEE----KRLYGAICAAPAVTLLPW 129 (405)
Q Consensus 79 ~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~----~~~i~aic~g~~~~La~a 129 (405)
.||.|||.||. +... ++.-..++.+.++. ..||.+||-|.. +|+.+
T Consensus 53 ~~D~VVIspGP-G~p~---~~~~~~i~~~i~~~~~~~~iPvLGIClG~Q-lLa~a 102 (742)
T TIGR01823 53 LFDAIVVGPGP-GNPN---NAQDMGIISELWELANLDEVPVLGICLGFQ-SLCLA 102 (742)
T ss_pred CCCEEEECCCC-CCcc---chhhhHHHHHHHHhcccCCCcEEEEchhhH-HHHhh
Confidence 69999998883 3321 22223445555544 499999999766 56654
No 280
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.51 E-value=14 Score=34.95 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=57.4
Q ss_pred CCcEEEEEecCCCc-h-hhHHHHHHHHHhcCCEEEEEecCCCceeEecc-----CcEEecCccc-CCCCCCcccEEEEcC
Q 015523 16 FALNVLVPVGFGTE-E-MEAVIIVDVLRRAGAQVTMASVEPQLEVEASS-----GTRLVADTSI-SNCSHQVFDLIALPG 87 (405)
Q Consensus 16 ~~~ki~ill~~g~~-~-~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~-----g~~v~~~~~~-~~~~~~~~d~liipg 87 (405)
+++||+|+.-.+-. . ..+..+.++|.+.++++.+...... ...... |.. .+.... .... .+.|++|+.|
T Consensus 4 ~~~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~D~vi~lG 80 (306)
T PRK03372 4 ASRRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAV-DLGATHPAPDDFRA-MEVVDADPDAA-DGCELVLVLG 80 (306)
T ss_pred CccEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhh-hhcccccccccccc-cccccchhhcc-cCCCEEEEEc
Confidence 45679999876543 2 2345566678888998888654332 111000 000 000010 1121 2589999999
Q ss_pred CchhhhccccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 88 GMPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 88 g~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
| |..+++..+.+...+.||.+|-.|
T Consensus 81 G---------DGT~L~aar~~~~~~~PilGIN~G 105 (306)
T PRK03372 81 G---------DGTILRAAELARAADVPVLGVNLG 105 (306)
T ss_pred C---------CHHHHHHHHHhccCCCcEEEEecC
Confidence 9 467778888888889999999885
No 281
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.98 E-value=16 Score=34.39 Aligned_cols=91 Identities=13% Similarity=0.033 Sum_probs=55.2
Q ss_pred CCcEEEEEecCCCc-hhh-HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523 16 FALNVLVPVGFGTE-EME-AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 93 (405)
Q Consensus 16 ~~~ki~ill~~g~~-~~e-~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~ 93 (405)
.+++|+|+.-.+-. ..+ +..+.++|.+.++++.+-..... .. +..........+.. .++|.+++.||
T Consensus 4 ~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~-~~----~~~~~~~~~~~~~~-~~~d~vi~lGG----- 72 (292)
T PRK03378 4 HFKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAH-EL----QLKNVKTGTLAEIG-QQADLAIVVGG----- 72 (292)
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc----CcccccccchhhcC-CCCCEEEEECC-----
Confidence 35679999866543 222 44566778888988876543221 11 00000001112222 25899999999
Q ss_pred ccccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 94 RLRDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
|..+++..+.+...+.||.++..|
T Consensus 73 ----DGT~L~aa~~~~~~~~Pilgin~G 96 (292)
T PRK03378 73 ----DGNMLGAARVLARYDIKVIGINRG 96 (292)
T ss_pred ----cHHHHHHHHHhcCCCCeEEEEECC
Confidence 456777777777778999999885
No 282
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=79.96 E-value=13 Score=34.97 Aligned_cols=92 Identities=15% Similarity=0.081 Sum_probs=56.2
Q ss_pred CCCcEEEEEecCCCch-h-hHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh
Q 015523 15 SFALNVLVPVGFGTEE-M-EAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 92 (405)
Q Consensus 15 ~~~~ki~ill~~g~~~-~-e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~ 92 (405)
+++++|+|+...+-.. . .+..+.++|++.++++.+...... .... .... .....+.. ..+|++|+.||
T Consensus 3 ~~~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~-~~~~-~~~~---~~~~~~~~-~~~d~vi~~GG---- 72 (291)
T PRK02155 3 SQFKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTAR-NIGL-TGYP---ALTPEEIG-ARADLAVVLGG---- 72 (291)
T ss_pred CcCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hcCc-cccc---ccChhHhc-cCCCEEEEECC----
Confidence 3466799998766532 2 256666778888888776533221 1100 0000 00112222 25899999999
Q ss_pred hccccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 93 VRLRDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
|..+++.++.+...+.|+.++-.|
T Consensus 73 -----DGt~l~~~~~~~~~~~pilGIn~G 96 (291)
T PRK02155 73 -----DGTMLGIGRQLAPYGVPLIGINHG 96 (291)
T ss_pred -----cHHHHHHHHHhcCCCCCEEEEcCC
Confidence 456777888777788999998874
No 283
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=79.54 E-value=5.7 Score=42.58 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=52.7
Q ss_pred HHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCE
Q 015523 238 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI 317 (405)
Q Consensus 238 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~ 317 (405)
..+..|.+.|+++.++--+ ..+.+ .+||.+++-.|.+++.. -+.+.+-+++....++|
T Consensus 185 N~IRcL~~RGa~vtVvPw~----------------~~i~~---~~yDGlflSNGPGdPe~---~~~~v~~vr~lL~~~~P 242 (1435)
T KOG0370|consen 185 NQIRCLVKRGAEVTVVPWD----------------YPIAK---EEYDGLFLSNGPGDPEL---CPLLVQNVRELLESNVP 242 (1435)
T ss_pred HHHHHHHHhCceEEEecCC----------------ccccc---cccceEEEeCCCCCchh---hHHHHHHHHHHHhCCCC
Confidence 3556677777877776333 23444 37999999999765443 34666777777777899
Q ss_pred EEEEchHHHHHHHc
Q 015523 318 YGAVCSSPIVLHKH 331 (405)
Q Consensus 318 i~aic~g~~~La~a 331 (405)
|.+||.|-.+||.+
T Consensus 243 vfGIClGHQllA~A 256 (1435)
T KOG0370|consen 243 VFGICLGHQLLALA 256 (1435)
T ss_pred eEEEehhhHHHHHh
Confidence 99999999999876
No 284
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=79.23 E-value=9.3 Score=37.43 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=34.6
Q ss_pred CCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHH
Q 015523 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVL 328 (405)
Q Consensus 281 ~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~L 328 (405)
...|.++||||++. +.-+--+...+.+..++.|..+||-|..+.
T Consensus 362 ~~adGilvPGGFG~----RGveG~i~Aak~ARen~iP~LGiCLGmQ~A 405 (585)
T KOG2387|consen 362 KSADGILVPGGFGD----RGVEGKILAAKWARENKIPFLGICLGMQLA 405 (585)
T ss_pred ccCCeEEeCCcccc----cchhHHHHHHHHHHhcCCCeEeeehhhhHH
Confidence 56899999999842 233455666788889999999999998864
No 285
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.28 E-value=21 Score=33.66 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=56.0
Q ss_pred CCcEEEEEecCCCch-h-hHHHHHHHHHhcCCEEEEEecCCC-ceeEe--ccCcEEecCcccCCCCCCcccEEEEcCCch
Q 015523 16 FALNVLVPVGFGTEE-M-EAVIIVDVLRRAGAQVTMASVEPQ-LEVEA--SSGTRLVADTSISNCSHQVFDLIALPGGMP 90 (405)
Q Consensus 16 ~~~ki~ill~~g~~~-~-e~~~~~~~l~~~~~~v~~vs~~~~-~~v~~--~~g~~v~~~~~~~~~~~~~~d~liipgg~~ 90 (405)
.++||+|+.-.+-.. . .+..+.++|.+.++++.+-..... ..... ..+... ....+.. ...|++|+.||
T Consensus 4 ~~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~D~vi~lGG-- 77 (296)
T PRK04539 4 PFHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHI---VNKTELG-QYCDLVAVLGG-- 77 (296)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccc---cchhhcC-cCCCEEEEECC--
Confidence 366899998765432 2 345566778888988877532110 00100 011111 0112222 25899999999
Q ss_pred hhhccccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 91 GSVRLRDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
|..+++..+.+...+.||.++-.|
T Consensus 78 -------DGT~L~aa~~~~~~~~PilGIN~G 101 (296)
T PRK04539 78 -------DGTFLSVAREIAPRAVPIIGINQG 101 (296)
T ss_pred -------cHHHHHHHHHhcccCCCEEEEecC
Confidence 456777788777789999999885
No 286
>PRK09271 flavodoxin; Provisional
Probab=76.66 E-value=23 Score=29.88 Aligned_cols=91 Identities=18% Similarity=0.115 Sum_probs=49.2
Q ss_pred CEEEEEeCC--CCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523 221 PRVLIPIAN--GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 298 (405)
Q Consensus 221 ~~V~il~~~--g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~ 298 (405)
|||.|+-.. |....=.-.+.+.|...|+++++...... .+ .....+. .++|++++.....+...+
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~-~~----------~~~~~~~--~~~d~vilgt~T~~~G~~ 67 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQ-TL----------AEYPLDP--EDYDLYLLGTWTDNAGRT 67 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccc-cc----------cccccCc--ccCCEEEEECcccCCCcC
Confidence 466666655 33333344456888888888876654432 10 0011222 578999987632111111
Q ss_pred h-cChHHHHHHHHHhhcCCEEEEEchH
Q 015523 299 Q-KSRILKKLLKEQKVAGRIYGAVCSS 324 (405)
Q Consensus 299 ~-~~~~l~~~l~~~~~~~k~i~aic~g 324 (405)
+ .-..+.++|.....++|.++.+++|
T Consensus 68 p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 68 PPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred CHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 1 1234555555544478888888776
No 287
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.51 E-value=16 Score=34.34 Aligned_cols=93 Identities=11% Similarity=0.010 Sum_probs=55.0
Q ss_pred cEEEEEecCCCch-hh-HHHHHHHHHhcCCEEEEEecCCCceeEeccCc--EEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523 18 LNVLVPVGFGTEE-ME-AVIIVDVLRRAGAQVTMASVEPQLEVEASSGT--RLVADTSISNCSHQVFDLIALPGGMPGSV 93 (405)
Q Consensus 18 ~ki~ill~~g~~~-~e-~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~--~v~~~~~~~~~~~~~~d~liipgg~~~~~ 93 (405)
|||+|+.-.+-.. .+ +..+.++|++.++++.+-..... ........ .........+.. ..+|.+++.||
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~lGG----- 73 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLD-FLKQDLKFHPSYDTFSDNEELD-GSADMVISIGG----- 73 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hhccccccccccccccchhhcc-cCCCEEEEECC-----
Confidence 5799997665432 22 44556678888988877543322 11100000 000000112222 25899999999
Q ss_pred ccccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 94 RLRDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
|..+++..+.+...+.||.+|-.|
T Consensus 74 ----DGT~L~aa~~~~~~~~PilGIN~G 97 (292)
T PRK01911 74 ----DGTFLRTATYVGNSNIPILGINTG 97 (292)
T ss_pred ----cHHHHHHHHHhcCCCCCEEEEecC
Confidence 456777888887789999999885
No 288
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=75.93 E-value=38 Score=28.87 Aligned_cols=110 Identities=25% Similarity=0.222 Sum_probs=63.7
Q ss_pred CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCcee----------ecCCCcEEeeCCCccCcC--CCCccEE
Q 015523 219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQI----------VASQGVKIIADKSISDAA--ESVYDLI 286 (405)
Q Consensus 219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v----------~~~~g~~v~~~~~l~~~~--~~~~D~l 286 (405)
+.++|.|++-+|-+-.+-..+...|...|++|.++........ -...|..+.......+.. ..++|++
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~dlI 103 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPADLI 103 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCESEE
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccccEE
Confidence 5689999999999999999999999999999999555432111 112366666543333320 1256766
Q ss_pred E--EcC-CccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC
Q 015523 287 I--LPG-GVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 332 (405)
Q Consensus 287 i--vpg-G~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG 332 (405)
| +-| |.. ..+ .+.+.+++++..+...++.||---+-+=+..|
T Consensus 104 IDal~G~G~~--~~l--~~~~~~~i~~iN~~~~~viAiDiPSGl~~dtG 148 (169)
T PF03853_consen 104 IDALFGTGFS--GPL--RGPIAELIDWINASRAPVIAIDIPSGLDADTG 148 (169)
T ss_dssp EEES-STTGG--SCG--STCHHHHHHHHHHHCSEEEEESS-TTCBTTTB
T ss_pred EEecccCCCC--CCc--CHHHHHHHHHHhccCCcEEEecCCCCccCCCC
Confidence 5 222 221 111 22355555555555888999876554444444
No 289
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.88 E-value=23 Score=33.53 Aligned_cols=96 Identities=20% Similarity=0.184 Sum_probs=59.0
Q ss_pred CcCEEEEEeCCCC-cHHH-HHHHHHHHHhCCCeEEEEeecCCceeecCC-----CcEEeeCCCc-cCcCCCCccEEEEcC
Q 015523 219 RMPRVLIPIANGS-EEIE-IVTIVDILRRAKVDVVVASVERSTQIVASQ-----GVKIIADKSI-SDAAESVYDLIILPG 290 (405)
Q Consensus 219 ~~~~V~il~~~g~-~~~e-~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~-----g~~v~~~~~l-~~~~~~~~D~livpg 290 (405)
++++|+|+.-.+- ...+ +..+.+.|.+.|+++.+...... ...... |..+. .... .+. ..+.|++++.|
T Consensus 4 ~~~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~D~vi~lG 80 (306)
T PRK03372 4 ASRRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAV-DLGATHPAPDDFRAME-VVDADPDA-ADGCELVLVLG 80 (306)
T ss_pred CccEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhh-hhcccccccccccccc-cccchhhc-ccCCCEEEEEc
Confidence 5678999977654 3333 34555668888988877654322 111000 00000 0011 111 24589999999
Q ss_pred CccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHH
Q 015523 291 GVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 326 (405)
Q Consensus 291 G~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~ 326 (405)
| |..+++..+.+...+.||.+|-.|..
T Consensus 81 G---------DGT~L~aar~~~~~~~PilGIN~G~l 107 (306)
T PRK03372 81 G---------DGTILRAAELARAADVPVLGVNLGHV 107 (306)
T ss_pred C---------CHHHHHHHHHhccCCCcEEEEecCCC
Confidence 8 45788888888888999999998865
No 290
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.60 E-value=19 Score=33.81 Aligned_cols=88 Identities=13% Similarity=0.117 Sum_probs=55.3
Q ss_pred CCcEEEEEecCCCchhhH-HHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523 16 FALNVLVPVGFGTEEMEA-VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 94 (405)
Q Consensus 16 ~~~ki~ill~~g~~~~e~-~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~ 94 (405)
.++||+|+.-++-...++ ..+.++|.+.++++.+-..... ... ..+. ...+.. .++|.+|+.||
T Consensus 9 ~~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~-~~~-~~~~------~~~~~~-~~~Dlvi~iGG------ 73 (287)
T PRK14077 9 NIKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAE-ILD-LPGY------GLDELF-KISDFLISLGG------ 73 (287)
T ss_pred cCCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhh-hhc-cccc------chhhcc-cCCCEEEEECC------
Confidence 466899998766333333 3445667777888777543322 111 1111 112222 25899999999
Q ss_pred cccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 95 LRDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
|..+++..+.+...+.||.++-.|
T Consensus 74 ---DGT~L~aa~~~~~~~~PilGIN~G 97 (287)
T PRK14077 74 ---DGTLISLCRKAAEYDKFVLGIHAG 97 (287)
T ss_pred ---CHHHHHHHHHhcCCCCcEEEEeCC
Confidence 456778888888889999999774
No 291
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=75.35 E-value=23 Score=31.25 Aligned_cols=109 Identities=19% Similarity=0.230 Sum_probs=72.0
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCC--------C--cEEeeCCCccCcCCCCccEEE--
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQ--------G--VKIIADKSISDAAESVYDLII-- 287 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~--------g--~~v~~~~~l~~~~~~~~D~li-- 287 (405)
.++|.|++-+|-+--|=......|...|+.|++.-.....+..+.. + ..+... ...+ .+..+|+||
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~-~~~~-~~~~~dvIVDa 126 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKIK-ELED-EPESADVIVDA 126 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCCcceeec-cccc-ccccCCEEEEe
Confidence 5799999999999999999999999999999988876542333332 1 111111 1111 234566665
Q ss_pred EcC-CccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCC
Q 015523 288 LPG-GVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLL 334 (405)
Q Consensus 288 vpg-G~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL 334 (405)
+-| |..+ .-.+++...|+...+++++|.|+---+-+=+..|-.
T Consensus 127 lfG~G~~g----~lrep~a~~Ie~iN~~~~pivAVDiPSGl~~dtG~~ 170 (203)
T COG0062 127 LFGTGLSG----PLREPFASLIEAINASGKPIVAVDIPSGLDADTGEV 170 (203)
T ss_pred ceecCCCC----CCccHHHHHHHHHHhcCCceEEEeCCCCcCCCCCcc
Confidence 223 2211 123466677777779999999998877777777643
No 292
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.21 E-value=22 Score=33.67 Aligned_cols=93 Identities=14% Similarity=0.024 Sum_probs=56.0
Q ss_pred CcEEEEEecCCCc-hh-hHHHHHHHHHhcCCEEEEEecCCCceeEeccCc--EE---e-cCcccCCCCCCcccEEEEcCC
Q 015523 17 ALNVLVPVGFGTE-EM-EAVIIVDVLRRAGAQVTMASVEPQLEVEASSGT--RL---V-ADTSISNCSHQVFDLIALPGG 88 (405)
Q Consensus 17 ~~ki~ill~~g~~-~~-e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~--~v---~-~~~~~~~~~~~~~d~liipgg 88 (405)
|+||+|+.-++-. .. -+..+.++|.+.++++.+-..... ... .... .+ . ......+.. .+.|.+|+.||
T Consensus 1 m~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGG 77 (305)
T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGG-ILG-YANPDQPVCHTGIDQLVPPGFD-SSMKFAIVLGG 77 (305)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hcC-ccccccccccccccccChhhcc-cCcCEEEEEeC
Confidence 4579999776543 22 344566778888998887654322 110 0000 00 0 000111221 25799999999
Q ss_pred chhhhccccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 89 MPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
|..+++..+.+...+.||.++-.|
T Consensus 78 ---------DGTlL~aar~~~~~~iPilGIN~G 101 (305)
T PRK02649 78 ---------DGTVLSAARQLAPCGIPLLTINTG 101 (305)
T ss_pred ---------cHHHHHHHHHhcCCCCcEEEEeCC
Confidence 457778888888889999999774
No 293
>PRK06455 riboflavin synthase; Provisional
Probab=75.19 E-value=5.7 Score=33.25 Aligned_cols=92 Identities=14% Similarity=0.113 Sum_probs=49.9
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhC--CCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCcc--ch
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRA--KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVA--GA 295 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~--~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~--~~ 295 (405)
|+||+|+...-....=+.++.+.|.+. +.++.++..-|- .-+.+.....+++ ..||++|..|-.+ ..
T Consensus 1 ~~kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa------~ELP~aakkL~~~---~~yDaVIaLG~VG~t~h 71 (155)
T PRK06455 1 MMKIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGI------KDLPVAAKKLIEE---EGCDIVMALGMPGPTEK 71 (155)
T ss_pred CcEEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCH------HHHHHHHHHHHhc---CCCCEEEEecceeccCc
Confidence 578999987643333358899999994 466666655541 1111111212222 5699999887331 22
Q ss_pred HhhhcChHHHHHHHHHhhcCCEEEE
Q 015523 296 ERLQKSRILKKLLKEQKVAGRIYGA 320 (405)
Q Consensus 296 ~~~~~~~~l~~~l~~~~~~~k~i~a 320 (405)
..+..+.....+.+-....++||+-
T Consensus 72 ~d~Va~~vS~GL~~lsL~t~~PVi~ 96 (155)
T PRK06455 72 DKYCAHEASIGLIMAQLMTNKHIIE 96 (155)
T ss_pred chhHHHHHHHHHHHHHhhhCCCEEE
Confidence 2333334444444444555555553
No 294
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=73.72 E-value=9.4 Score=41.55 Aligned_cols=89 Identities=12% Similarity=0.041 Sum_probs=50.8
Q ss_pred EEEecCCCchhhHHHHHHHHHhc-CCEEEEEecCCCceeEeccCcEEecCcccCCCC-----CCcccEEEEcCCchhhhc
Q 015523 21 LVPVGFGTEEMEAVIIVDVLRRA-GAQVTMASVEPQLEVEASSGTRLVADTSISNCS-----HQVFDLIALPGGMPGSVR 94 (405)
Q Consensus 21 ~ill~~g~~~~e~~~~~~~l~~~-~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~-----~~~~d~liipgg~~~~~~ 94 (405)
=||+.|+++-... .++..|+.. |.++.++-.+.- +++++. ...||.|||-+|...+..
T Consensus 83 ~iLlIDnyDSfTy-NL~~~L~~~~g~~~~Vv~nd~~---------------~~~~~~~~~~~~~~~d~IVlSPGPG~P~~ 146 (918)
T PLN02889 83 RTLLIDNYDSYTY-NIYQELSIVNGVPPVVVRNDEW---------------TWEEVYHYLYEEKAFDNIVISPGPGSPTC 146 (918)
T ss_pred eEEEEeCCCchHH-HHHHHHHHhcCCCEEEEeCCCC---------------CHHHHHhhhhcccCCCEEEECCCCCCccc
Confidence 3666777776653 356666665 777776654431 111110 125899999888422222
Q ss_pred cccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
..+.....+.|.+. .+.||.+||-|-. .|+.
T Consensus 147 ~~d~Gi~~~~i~~~--~~iPILGICLGhQ-~i~~ 177 (918)
T PLN02889 147 PADIGICLRLLLEC--RDIPILGVCLGHQ-ALGY 177 (918)
T ss_pred hHHHHHHHHHHHHh--CCCcEEEEcHHHH-HHHH
Confidence 11222234555543 5799999999755 4554
No 295
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.18 E-value=30 Score=32.75 Aligned_cols=95 Identities=18% Similarity=0.161 Sum_probs=57.7
Q ss_pred cCEEEEEeCCCC-cHHH-HHHHHHHHHhCCCeEEEEeecCCceeecCCCc--EE---eeC-CCccCcCCCCccEEEEcCC
Q 015523 220 MPRVLIPIANGS-EEIE-IVTIVDILRRAKVDVVVASVERSTQIVASQGV--KI---IAD-KSISDAAESVYDLIILPGG 291 (405)
Q Consensus 220 ~~~V~il~~~g~-~~~e-~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~--~v---~~~-~~l~~~~~~~~D~livpgG 291 (405)
|++|+|+.-++- ...+ +..+.+.|.+.|+.+.+-..... ... .... .+ ..+ ....+. ..+.|++++.||
T Consensus 1 m~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~Dlvi~iGG 77 (305)
T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGG-ILG-YANPDQPVCHTGIDQLVPPGF-DSSMKFAIVLGG 77 (305)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hcC-ccccccccccccccccChhhc-ccCcCEEEEEeC
Confidence 568999877655 2333 34556668888988877543321 110 0000 00 000 011222 135899999999
Q ss_pred ccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHH
Q 015523 292 VAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 326 (405)
Q Consensus 292 ~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~ 326 (405)
|..+++..+.+...+.||.+|-.|..
T Consensus 78 ---------DGTlL~aar~~~~~~iPilGIN~G~l 103 (305)
T PRK02649 78 ---------DGTVLSAARQLAPCGIPLLTINTGHL 103 (305)
T ss_pred ---------cHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence 44788888888888999999998865
No 296
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=72.40 E-value=3.5 Score=36.93 Aligned_cols=75 Identities=13% Similarity=0.130 Sum_probs=36.4
Q ss_pred HHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh--cc-------------ccChH
Q 015523 36 IVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV--RL-------------RDCEI 100 (405)
Q Consensus 36 ~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~--~~-------------~~~~~ 100 (405)
.++.+.++|...-++...... ..+...- ...|.|++|||..+.. .+ ..+.-
T Consensus 29 Yv~~i~~aG~~pv~ip~~~~~-------------~~~~~~l-~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~ 94 (217)
T PF07722_consen 29 YVKAIEAAGGRPVPIPYDADD-------------EELDELL-DRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIF 94 (217)
T ss_dssp HHHHHHHTT-EEEEE-SS--H-------------HHHHHHH-HCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHH
T ss_pred HHHHHHHcCCEEEEEccCCCH-------------HHHHHHH-hhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHH
Confidence 456666667666666544320 0111111 2589999999941220 00 01122
Q ss_pred HHHHHHHHHHcCCEEEEEccchHH
Q 015523 101 LKKITSKQAEEKRLYGAICAAPAV 124 (405)
Q Consensus 101 ~~~~l~~~~~~~~~i~aic~g~~~ 124 (405)
-+.+++.+.++++||.+||-|-.+
T Consensus 95 e~~l~~~a~~~~~PilGICrG~Q~ 118 (217)
T PF07722_consen 95 ELALIRNALGRGKPILGICRGMQL 118 (217)
T ss_dssp HHHHHHHHCCTT--EEEETHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEcHHHHH
Confidence 346677788899999999997664
No 297
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=71.86 E-value=28 Score=29.93 Aligned_cols=83 Identities=14% Similarity=0.130 Sum_probs=49.5
Q ss_pred cEEEEEecC--CCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523 18 LNVLVPVGF--GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 95 (405)
Q Consensus 18 ~ki~ill~~--g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~ 95 (405)
||+.|+-.. |.+..=...+.+.|.. |.+++++..... ...++ .+||.||+-++. ..-
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~---------------~~~~l--~~yD~vIlGspi---~~G 59 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRI---------------EEPDL--SDYDRVVIGASI---RYG 59 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhc---------------CccCH--HHCCEEEEECcc---ccC
Confidence 467776654 3333334455677776 778877764431 00122 369998876642 111
Q ss_pred ccChHHHHHHHHHH--HcCCEEEEEccc
Q 015523 96 RDCEILKKITSKQA--EEKRLYGAICAA 121 (405)
Q Consensus 96 ~~~~~~~~~l~~~~--~~~~~i~aic~g 121 (405)
.-.+.+.+|+.+.. -++|+++.+|.|
T Consensus 60 ~~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 60 HFHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred CcCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 23477888887644 368899999985
No 298
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=71.74 E-value=25 Score=29.61 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=56.1
Q ss_pred cEEEEEec--CCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523 18 LNVLVPVG--FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 95 (405)
Q Consensus 18 ~ki~ill~--~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~ 95 (405)
||++|+-. +|-...-...+..-|++.|.++++.-.+.- ...+..+||+++|-.. ....
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~-----------------~~~~l~~ydavVIgAs---I~~~ 60 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAV-----------------EEPALEDYDAVVIGAS---IRYG 60 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhh-----------------hccChhhCceEEEecc---hhhh
Confidence 35555532 244444455566677788888888866553 1233458999999654 3344
Q ss_pred ccChHHHHHHHHHHH--cCCEEEEEccc
Q 015523 96 RDCEILKKITSKQAE--EKRLYGAICAA 121 (405)
Q Consensus 96 ~~~~~~~~~l~~~~~--~~~~i~aic~g 121 (405)
+-++.+.+|+.++.. ..+|.+.+|.+
T Consensus 61 h~~~~~~~Fv~k~~e~L~~kP~A~f~vn 88 (175)
T COG4635 61 HFHEAVQSFVKKHAEALSTKPSAFFSVN 88 (175)
T ss_pred hhHHHHHHHHHHHHHHHhcCCceEEEee
Confidence 457888999998776 57999999994
No 299
>PRK06703 flavodoxin; Provisional
Probab=71.55 E-value=13 Score=30.86 Aligned_cols=88 Identities=23% Similarity=0.235 Sum_probs=48.0
Q ss_pred cCEEEEEeCCCCcHHH--HHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523 220 MPRVLIPIANGSEEIE--IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 297 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e--~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~ 297 (405)
|++|.|+-+...--.+ .-.+.+.|...++.+++.....- ..+++ .++|.|++.....+...
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~---------------~~~~l--~~~d~viigspt~~~g~ 63 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGM---------------DAEEL--LAYDGIILGSYTWGDGD 63 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhC---------------CHHHH--hcCCcEEEEECCCCCCc
Confidence 4678888776443333 33345667778888887755431 11233 67888888542211111
Q ss_pred hh-cChHHHHHHHHHhhcCCEEEEEchH
Q 015523 298 LQ-KSRILKKLLKEQKVAGRIYGAVCSS 324 (405)
Q Consensus 298 ~~-~~~~l~~~l~~~~~~~k~i~aic~g 324 (405)
++ .-..+++++++..-+++.++.++.|
T Consensus 64 ~p~~~~~f~~~l~~~~l~~k~~~vfg~g 91 (151)
T PRK06703 64 LPYEAEDFHEDLENIDLSGKKVAVFGSG 91 (151)
T ss_pred CcHHHHHHHHHHhcCCCCCCEEEEEccC
Confidence 11 1234445554444567888877765
No 300
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.71 E-value=30 Score=32.53 Aligned_cols=93 Identities=15% Similarity=0.187 Sum_probs=56.7
Q ss_pred CcCEEEEEeCCCC-cHHH-HHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523 219 RMPRVLIPIANGS-EEIE-IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 296 (405)
Q Consensus 219 ~~~~V~il~~~g~-~~~e-~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~ 296 (405)
.+++|+|+.-++- ...+ +..+.+.|.+.++++.+...... .. ......... ..+. ...+|.+++.||
T Consensus 3 ~~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~-~~-~~~~~~~~~---~~~~-~~~~d~vi~~GG----- 71 (295)
T PRK01231 3 SFRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAE-VL-PGHGLQTVS---RKLL-GEVCDLVIVVGG----- 71 (295)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc-Ccccccccc---hhhc-ccCCCEEEEEeC-----
Confidence 4678999987665 3333 34556678888888776543221 10 000011111 1111 136899999998
Q ss_pred hhhcChHHHHHHHHHhhcCCEEEEEchHHH
Q 015523 297 RLQKSRILKKLLKEQKVAGRIYGAVCSSPI 326 (405)
Q Consensus 297 ~~~~~~~l~~~l~~~~~~~k~i~aic~g~~ 326 (405)
|..+++..+.+...+.+|.+|-.|-.
T Consensus 72 ----DGt~l~~~~~~~~~~~Pvlgin~G~l 97 (295)
T PRK01231 72 ----DGSLLGAARALARHNVPVLGINRGRL 97 (295)
T ss_pred ----cHHHHHHHHHhcCCCCCEEEEeCCcc
Confidence 34677777877778899999988764
No 301
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.04 E-value=34 Score=32.11 Aligned_cols=98 Identities=9% Similarity=0.019 Sum_probs=57.7
Q ss_pred CEEEEEeCCCC-cHHHH-HHHHHHHHhCCCeEEEEeecCCceeecCCCcE--EeeCCCccCcCCCCccEEEEcCCccchH
Q 015523 221 PRVLIPIANGS-EEIEI-VTIVDILRRAKVDVVVASVERSTQIVASQGVK--IIADKSISDAAESVYDLIILPGGVAGAE 296 (405)
Q Consensus 221 ~~V~il~~~g~-~~~e~-~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~--v~~~~~l~~~~~~~~D~livpgG~~~~~ 296 (405)
|+|+|+.-.+- ...++ ..+.+.|.+.|+++.+-..... ......... .......++. ..++|.+++.||
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~dlvi~lGG----- 73 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLD-FLKQDLKFHPSYDTFSDNEEL-DGSADMVISIGG----- 73 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hhccccccccccccccchhhc-ccCCCEEEEECC-----
Confidence 57888876654 33333 3455668888888777543221 111000000 0000011222 135899999998
Q ss_pred hhhcChHHHHHHHHHhhcCCEEEEEchHHH-HHH
Q 015523 297 RLQKSRILKKLLKEQKVAGRIYGAVCSSPI-VLH 329 (405)
Q Consensus 297 ~~~~~~~l~~~l~~~~~~~k~i~aic~g~~-~La 329 (405)
|..+++..+.+...+.||.+|-.|.. +|+
T Consensus 74 ----DGT~L~aa~~~~~~~~PilGIN~G~lGFLt 103 (292)
T PRK01911 74 ----DGTFLRTATYVGNSNIPILGINTGRLGFLA 103 (292)
T ss_pred ----cHHHHHHHHHhcCCCCCEEEEecCCCCccc
Confidence 45788888888888999999999875 443
No 302
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=69.72 E-value=6.2 Score=39.23 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=52.4
Q ss_pred cEEEEEecCCCc-hhhHHHHHHHHHhc----CCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh
Q 015523 18 LNVLVPVGFGTE-EMEAVIIVDVLRRA----GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 92 (405)
Q Consensus 18 ~ki~ill~~g~~-~~e~~~~~~~l~~~----~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~ 92 (405)
.||+++- .-.. ...+..+.+.|+-+ +.++++...+.. .+...+. .... ..+|.++||||+.
T Consensus 289 v~IalVG-KYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse-~le~~~~---------~~~~-~~~dgIlVPGGFG-- 354 (533)
T COG0504 289 VTIALVG-KYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSE-DLEEENA---------AELE-KLVDGILVPGGFG-- 354 (533)
T ss_pred eEEEEEE-CCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccc-cccccch---------hhhh-hcCCEEEeCCCCC--
Confidence 4566653 1111 23455666777655 345555555443 2221110 0111 1289999999952
Q ss_pred hccccChHHHHHHHHHHHcCCEEEEEccchH
Q 015523 93 VRLRDCEILKKITSKQAEEKRLYGAICAAPA 123 (405)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~ 123 (405)
.+.-+.-+..++-+.+++.|+.+||-|-.
T Consensus 355 --~RG~eGkI~Ai~yAREn~iP~lGIClGmQ 383 (533)
T COG0504 355 --YRGVEGKIAAIRYARENNIPFLGICLGMQ 383 (533)
T ss_pred --cCchHHHHHHHHHHHhcCCCEEEEchhHH
Confidence 23445666778888899999999999643
No 303
>PRK05568 flavodoxin; Provisional
Probab=69.56 E-value=39 Score=27.52 Aligned_cols=86 Identities=16% Similarity=0.219 Sum_probs=49.8
Q ss_pred cCEEEEEeCCCC--cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523 220 MPRVLIPIANGS--EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 297 (405)
Q Consensus 220 ~~~V~il~~~g~--~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~ 297 (405)
|+++.|+-+... ...=.-.+.+.+...|.+++++..... . ..++ .++|.|++...... ..
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~-~--------------~~~~--~~~d~iilgsp~y~-~~ 62 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEA-S--------------VDDV--KGADVVALGSPAMG-DE 62 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCC-C--------------HHHH--HhCCEEEEECCccC-cc
Confidence 456677766544 333334556777778888888865542 1 1234 67999998764311 11
Q ss_pred hhcChHHHHHHHHHh--hcCCEEEEEch
Q 015523 298 LQKSRILKKLLKEQK--VAGRIYGAVCS 323 (405)
Q Consensus 298 ~~~~~~l~~~l~~~~--~~~k~i~aic~ 323 (405)
......+..++.... .++|.++.+|+
T Consensus 63 ~~~~~~~~~f~~~~~~~~~~k~~~~f~t 90 (142)
T PRK05568 63 VLEEGEMEPFVESISSLVKGKKLVLFGS 90 (142)
T ss_pred cccchhHHHHHHHhhhhhCCCEEEEEEc
Confidence 111234555555442 36888888887
No 304
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=69.10 E-value=27 Score=29.04 Aligned_cols=64 Identities=16% Similarity=0.076 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHH
Q 015523 30 EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQA 109 (405)
Q Consensus 30 ~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~ 109 (405)
..++......|.+.++.+++++++.. . ..|++||+|.-. ...+...+.|+++.
T Consensus 25 ~~~~~~~~~~l~~~gi~~d~v~~~~~-------------------l--~~y~~vi~P~~~------~~~~~~~~~l~~~v 77 (154)
T cd03143 25 LDLALALYRALRELGIPVDVVPPDAD-------------------L--SGYKLVVLPDLY------LLSDATAAALRAYV 77 (154)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCC-------------------c--ccCCEEEECchh------cCCHHHHHHHHHHH
Confidence 45777888889999999999974332 2 269999999973 23457888899999
Q ss_pred HcCCEEEEEcc
Q 015523 110 EEKRLYGAICA 120 (405)
Q Consensus 110 ~~~~~i~aic~ 120 (405)
++|..+.+-+.
T Consensus 78 ~~GG~li~~~~ 88 (154)
T cd03143 78 ENGGTLVAGPR 88 (154)
T ss_pred HCCCEEEEecC
Confidence 99887666554
No 305
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.96 E-value=52 Score=30.98 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=56.9
Q ss_pred cCEEEEEeCCCC-cHHH-HHHHHHHHHhCCCeEEEEeecCC-ceeec--CCCcEEeeCCCccCcCCCCccEEEEcCCccc
Q 015523 220 MPRVLIPIANGS-EEIE-IVTIVDILRRAKVDVVVASVERS-TQIVA--SQGVKIIADKSISDAAESVYDLIILPGGVAG 294 (405)
Q Consensus 220 ~~~V~il~~~g~-~~~e-~~~~~~~l~~~~~~v~~vs~~~~-~~v~~--~~g~~v~~~~~l~~~~~~~~D~livpgG~~~ 294 (405)
+++|+|+.-.+- ...+ +..+.+.|.+.|+++.+-..... ..... ..+... ....+. ..+.|++++.||
T Consensus 5 ~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~D~vi~lGG--- 77 (296)
T PRK04539 5 FHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHI---VNKTEL-GQYCDLVAVLGG--- 77 (296)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccc---cchhhc-CcCCCEEEEECC---
Confidence 678999977654 3333 34556668888888876432110 00100 011111 111222 135899999999
Q ss_pred hHhhhcChHHHHHHHHHhhcCCEEEEEchHHH
Q 015523 295 AERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 326 (405)
Q Consensus 295 ~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~ 326 (405)
|..+++..+.+...+.||.+|-.|..
T Consensus 78 ------DGT~L~aa~~~~~~~~PilGIN~G~l 103 (296)
T PRK04539 78 ------DGTFLSVAREIAPRAVPIIGINQGHL 103 (296)
T ss_pred ------cHHHHHHHHHhcccCCCEEEEecCCC
Confidence 45778888888788999999998863
No 306
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=68.91 E-value=28 Score=28.96 Aligned_cols=63 Identities=21% Similarity=0.125 Sum_probs=48.1
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHH
Q 015523 232 EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQ 311 (405)
Q Consensus 232 ~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~ 311 (405)
...++...+..|.+.|+.+++++++.. . .+|++||+|.-.. -++...+.|+++
T Consensus 24 y~~~~~~~~~~l~~~gi~~d~v~~~~~-------------------l--~~y~~vi~P~~~~------~~~~~~~~l~~~ 76 (154)
T cd03143 24 YLDLALALYRALRELGIPVDVVPPDAD-------------------L--SGYKLVVLPDLYL------LSDATAAALRAY 76 (154)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCC-------------------c--ccCCEEEECchhc------CCHHHHHHHHHH
Confidence 456788899999999999999974321 1 4799999998642 356888888999
Q ss_pred hhcCCEEEEE
Q 015523 312 KVAGRIYGAV 321 (405)
Q Consensus 312 ~~~~k~i~ai 321 (405)
.++|..+.+-
T Consensus 77 v~~GG~li~~ 86 (154)
T cd03143 77 VENGGTLVAG 86 (154)
T ss_pred HHCCCEEEEe
Confidence 8888766653
No 307
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=68.37 E-value=10 Score=35.82 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcC-C-chhhhccccChHHHHHHHHH
Q 015523 31 MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG-G-MPGSVRLRDCEILKKITSKQ 108 (405)
Q Consensus 31 ~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipg-g-~~~~~~~~~~~~~~~~l~~~ 108 (405)
..+..+.+.++--||++..+-.-+ ++. ..|-||+|| | +....+......+.+-|++.
T Consensus 12 gn~~si~nal~hlg~~i~~v~~P~-------------------DI~--~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~Y 70 (541)
T KOG0623|consen 12 GNVRSIRNALRHLGFSIKDVQTPG-------------------DIL--NADRLIFPGVGNFGPAMDVLNRTGFAEPLRKY 70 (541)
T ss_pred ccHHHHHHHHHhcCceeeeccCch-------------------hhc--cCceEeecCcccchHHHHHHhhhhhHHHHHHH
Confidence 344455666666677776653222 232 478999998 2 11122233456788889999
Q ss_pred HHcCCEEEEEccchH
Q 015523 109 AEEKRLYGAICAAPA 123 (405)
Q Consensus 109 ~~~~~~i~aic~g~~ 123 (405)
..++||+.+||.|-.
T Consensus 71 iesgkPfmgicvGlQ 85 (541)
T KOG0623|consen 71 IESGKPFMGICVGLQ 85 (541)
T ss_pred HhcCCCeEeehhhHH
Confidence 999999999999755
No 308
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.03 E-value=38 Score=31.77 Aligned_cols=89 Identities=12% Similarity=0.183 Sum_probs=56.8
Q ss_pred cCEEEEEeCCCCcHHHHH-HHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523 220 MPRVLIPIANGSEEIEIV-TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 298 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~-~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~ 298 (405)
+++|+|+.-++-...++. .+.+.|.+.++++.+-..... ... ..+. .+++. ..++|.+++.||
T Consensus 10 ~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~-~~~-~~~~------~~~~~-~~~~Dlvi~iGG------- 73 (287)
T PRK14077 10 IKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAE-ILD-LPGY------GLDEL-FKISDFLISLGG------- 73 (287)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhh-hhc-cccc------chhhc-ccCCCEEEEECC-------
Confidence 578999987664444443 345567777877766543221 111 1111 11222 136899999998
Q ss_pred hcChHHHHHHHHHhhcCCEEEEEchHHH
Q 015523 299 QKSRILKKLLKEQKVAGRIYGAVCSSPI 326 (405)
Q Consensus 299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~ 326 (405)
|..+++..+.+...+.||.+|-.|..
T Consensus 74 --DGT~L~aa~~~~~~~~PilGIN~G~l 99 (287)
T PRK14077 74 --DGTLISLCRKAAEYDKFVLGIHAGHL 99 (287)
T ss_pred --CHHHHHHHHHhcCCCCcEEEEeCCCc
Confidence 45788888888888999999998874
No 309
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=67.77 E-value=37 Score=28.64 Aligned_cols=71 Identities=11% Similarity=0.162 Sum_probs=49.2
Q ss_pred HHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhh--
Q 015523 236 IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKV-- 313 (405)
Q Consensus 236 ~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~-- 313 (405)
...+..-|++.|..+++.-.+. ..+.++.+||+++|... .....-++.+.+++++...
T Consensus 18 A~~iA~~L~e~g~qvdi~dl~~-----------------~~~~~l~~ydavVIgAs---I~~~h~~~~~~~Fv~k~~e~L 77 (175)
T COG4635 18 AEYIASHLRESGIQVDIQDLHA-----------------VEEPALEDYDAVVIGAS---IRYGHFHEAVQSFVKKHAEAL 77 (175)
T ss_pred HHHHHHHhhhcCCeeeeeehhh-----------------hhccChhhCceEEEecc---hhhhhhHHHHHHHHHHHHHHH
Confidence 3445556667777777665554 23345588999999653 3344567889999998763
Q ss_pred cCCEEEEEchHHH
Q 015523 314 AGRIYGAVCSSPI 326 (405)
Q Consensus 314 ~~k~i~aic~g~~ 326 (405)
..+|.+.+|.+..
T Consensus 78 ~~kP~A~f~vnl~ 90 (175)
T COG4635 78 STKPSAFFSVNLT 90 (175)
T ss_pred hcCCceEEEeehh
Confidence 7899999998754
No 310
>PRK06756 flavodoxin; Provisional
Probab=67.64 E-value=26 Score=28.96 Aligned_cols=88 Identities=19% Similarity=0.198 Sum_probs=51.3
Q ss_pred cCEEEEEeCCCCcHHHH--HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523 220 MPRVLIPIANGSEEIEI--VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 297 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~--~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~ 297 (405)
|++|.|+-+...--.+- -.+.+.|...|..+++...... + ...++ .++|.|++.....+...
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~-~-------------~~~~~--~~~d~vi~gspt~~~g~ 64 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDS-P-------------EASIL--EQYDGIILGAYTWGDGD 64 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhcc-C-------------CHHHH--hcCCeEEEEeCCCCCCC
Confidence 46888887765433332 3345777778888887765432 1 12333 67899988653211111
Q ss_pred hhcChHHHHHHHHH---hhcCCEEEEEchHH
Q 015523 298 LQKSRILKKLLKEQ---KVAGRIYGAVCSSP 325 (405)
Q Consensus 298 ~~~~~~l~~~l~~~---~~~~k~i~aic~g~ 325 (405)
..+.+.+++.+. .-++|+++.+++|.
T Consensus 65 --~p~~~~~fl~~l~~~~l~~k~~~~fgt~~ 93 (148)
T PRK06756 65 --LPDDFLDFYDAMDSIDLTGKKAAVFGSCD 93 (148)
T ss_pred --CcHHHHHHHHHHhcCCCCCCEEEEEeCCC
Confidence 122466666654 34788998887743
No 311
>PRK05569 flavodoxin; Provisional
Probab=66.47 E-value=25 Score=28.67 Aligned_cols=87 Identities=16% Similarity=0.100 Sum_probs=48.9
Q ss_pred cCEEEEEeCCCC--cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523 220 MPRVLIPIANGS--EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 297 (405)
Q Consensus 220 ~~~V~il~~~g~--~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~ 297 (405)
|.+|.|+-+... ...=.-.+.+.+...|.++++...... . ..++ .++|.|++........
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~-~--------------~~~~--~~~d~iilgsPty~~~- 62 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADA-K--------------VEDV--LEADAVAFGSPSMDNN- 62 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcC-C--------------HHHH--hhCCEEEEECCCcCCC-
Confidence 357777776544 222233445667777888877765542 1 1344 6799999866421111
Q ss_pred hhcChHHHHHHHHH---hhcCCEEEEEchH
Q 015523 298 LQKSRILKKLLKEQ---KVAGRIYGAVCSS 324 (405)
Q Consensus 298 ~~~~~~l~~~l~~~---~~~~k~i~aic~g 324 (405)
....+.+..++..+ ..++|.++.++++
T Consensus 63 ~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~ 92 (141)
T PRK05569 63 NIEQEEMAPFLDQFKLTPNENKKCILFGSY 92 (141)
T ss_pred cCChHHHHHHHHHhhccCcCCCEEEEEeCC
Confidence 11113445555544 3468888888863
No 312
>PRK05568 flavodoxin; Provisional
Probab=65.68 E-value=45 Score=27.12 Aligned_cols=88 Identities=16% Similarity=0.124 Sum_probs=49.3
Q ss_pred cEEEEEecCCC--chhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523 18 LNVLVPVGFGT--EEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 95 (405)
Q Consensus 18 ~ki~ill~~g~--~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~ 95 (405)
+|+.|+-+... +..=...+.+.++..+.+++++..... .+ .++ .+||.|++-..... ...
T Consensus 2 ~~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~-~~--------------~~~--~~~d~iilgsp~y~-~~~ 63 (142)
T PRK05568 2 KKINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEA-SV--------------DDV--KGADVVALGSPAMG-DEV 63 (142)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCC-CH--------------HHH--HhCCEEEEECCccC-ccc
Confidence 46777765533 333335556677777888888865542 11 123 36899888553110 111
Q ss_pred ccChHHHHHHHHHH--HcCCEEEEEccchH
Q 015523 96 RDCEILKKITSKQA--EEKRLYGAICAAPA 123 (405)
Q Consensus 96 ~~~~~~~~~l~~~~--~~~~~i~aic~g~~ 123 (405)
.....+..|+.+.. .++|.++.+|+.|+
T Consensus 64 ~~~~~~~~f~~~~~~~~~~k~~~~f~t~G~ 93 (142)
T PRK05568 64 LEEGEMEPFVESISSLVKGKKLVLFGSYGW 93 (142)
T ss_pred ccchhHHHHHHHhhhhhCCCEEEEEEccCC
Confidence 11234556665542 36888888887443
No 313
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.38 E-value=52 Score=30.89 Aligned_cols=96 Identities=11% Similarity=0.082 Sum_probs=58.6
Q ss_pred CcCEEEEEeCCCC-cHHHH-HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523 219 RMPRVLIPIANGS-EEIEI-VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 296 (405)
Q Consensus 219 ~~~~V~il~~~g~-~~~e~-~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~ 296 (405)
.+++|+|+.-.+- ...++ ..+.+.|.+.|+++.+-..... .. +........+++. ..++|.+++.||
T Consensus 4 ~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~-~~----~~~~~~~~~~~~~-~~~~d~vi~lGG----- 72 (292)
T PRK03378 4 HFKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAH-EL----QLKNVKTGTLAEI-GQQADLAIVVGG----- 72 (292)
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc----Ccccccccchhhc-CCCCCEEEEECC-----
Confidence 3678999976654 33333 3466678888888766433221 11 0000000111222 236899999999
Q ss_pred hhhcChHHHHHHHHHhhcCCEEEEEchHHH-HHH
Q 015523 297 RLQKSRILKKLLKEQKVAGRIYGAVCSSPI-VLH 329 (405)
Q Consensus 297 ~~~~~~~l~~~l~~~~~~~k~i~aic~g~~-~La 329 (405)
|..+++..+.+...+.+|.+|..|.. +|+
T Consensus 73 ----DGT~L~aa~~~~~~~~Pilgin~G~lGFl~ 102 (292)
T PRK03378 73 ----DGNMLGAARVLARYDIKVIGINRGNLGFLT 102 (292)
T ss_pred ----cHHHHHHHHHhcCCCCeEEEEECCCCCccc
Confidence 45778888887777899999999883 444
No 314
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=65.25 E-value=10 Score=33.82 Aligned_cols=101 Identities=20% Similarity=0.176 Sum_probs=60.5
Q ss_pred CCcEEEEEecCCCchhh-HHHHHHHHHhcCC-EEEEEecCCCceeEeccCcEEecCcc-cCCCCCCcccEEEEcCCch-h
Q 015523 16 FALNVLVPVGFGTEEME-AVIIVDVLRRAGA-QVTMASVEPQLEVEASSGTRLVADTS-ISNCSHQVFDLIALPGGMP-G 91 (405)
Q Consensus 16 ~~~ki~ill~~g~~~~e-~~~~~~~l~~~~~-~v~~vs~~~~~~v~~~~g~~v~~~~~-~~~~~~~~~d~liipgg~~-~ 91 (405)
...||.++-+......+ .....+.|++.|+ +++++..... . -..+.. ...+ .+.|+|++.||-. .
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~-~--------~a~~~~~~~~l--~~ad~I~~~GG~~~~ 96 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSR-E--------AANDPEVVARL--RDADGIFFTGGDQLR 96 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCCh-H--------HcCCHHHHHHH--HhCCEEEEeCCcHHH
Confidence 34689888877654333 3345667777776 3555543321 0 000111 1112 3689999999931 1
Q ss_pred hhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523 92 SVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 128 (405)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ 128 (405)
..+......+.+.|++.++++.++++...| +.++..
T Consensus 97 ~~~~l~~t~l~~~l~~~~~~G~v~~G~SAG-A~i~~~ 132 (217)
T cd03145 97 ITSALGGTPLLDALRKVYRGGVVIGGTSAG-AAVMSD 132 (217)
T ss_pred HHHHHcCChHHHHHHHHHHcCCEEEEccHH-HHhhhh
Confidence 122234557888999999999999999995 545543
No 315
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=65.21 E-value=21 Score=31.50 Aligned_cols=66 Identities=21% Similarity=0.154 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHH
Q 015523 232 EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQ 311 (405)
Q Consensus 232 ~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~ 311 (405)
...++...+..|.+.|+.+++++++. ++ +.|.+|++|+-. .-+++..+.|+++
T Consensus 28 y~~~~~~~y~al~~~gi~vDvv~~~~-------------------dL--~~Ykllv~P~~~------~l~~~~~~~L~~y 80 (207)
T PF08532_consen 28 YRDQVRGWYRALRELGIPVDVVSPDD-------------------DL--SGYKLLVLPSLY------ILSPEFAERLRAY 80 (207)
T ss_dssp HHHHHHHHHHHHHTTT--EEEE-TTS-----------------------TT-SEEEES--S------C--HHH---HHHH
T ss_pred HHHHHHHHHHHHHHcCCceEEecCcC-------------------Cc--ccCcEEEEeeEE------EEChHHHHHHHHH
Confidence 35567888999999999999997653 22 569999999864 3567888889999
Q ss_pred hhcCCEEE-EEchH
Q 015523 312 KVAGRIYG-AVCSS 324 (405)
Q Consensus 312 ~~~~k~i~-aic~g 324 (405)
.++|..++ ..++|
T Consensus 81 V~~GG~li~~~~tg 94 (207)
T PF08532_consen 81 VENGGTLILTPRTG 94 (207)
T ss_dssp HT-SS-EEE-TTTT
T ss_pred HHCCCEEEEEcccC
Confidence 88765554 44443
No 316
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=64.91 E-value=23 Score=31.27 Aligned_cols=64 Identities=16% Similarity=0.047 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHH
Q 015523 30 EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQA 109 (405)
Q Consensus 30 ~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~ 109 (405)
..++......|.+.|+.+++++++. +.+ .|.+||+|+-. .-++++.+.|+++.
T Consensus 29 ~~~~~~~y~al~~~gi~vDvv~~~~-------------------dL~--~Ykllv~P~~~------~l~~~~~~~L~~yV 81 (207)
T PF08532_consen 29 RDQVRGWYRALRELGIPVDVVSPDD-------------------DLS--GYKLLVLPSLY------ILSPEFAERLRAYV 81 (207)
T ss_dssp HHHHHHHHHHHHTTT--EEEE-TTS---------------------T--T-SEEEES--S------C--HHH---HHHHH
T ss_pred HHHHHHHHHHHHHcCCceEEecCcC-------------------Ccc--cCcEEEEeeEE------EEChHHHHHHHHHH
Confidence 3456777888899999999998764 233 59999999962 34678888899999
Q ss_pred HcCCEEEEEcc
Q 015523 110 EEKRLYGAICA 120 (405)
Q Consensus 110 ~~~~~i~aic~ 120 (405)
++|..+..-+-
T Consensus 82 ~~GG~li~~~~ 92 (207)
T PF08532_consen 82 ENGGTLILTPR 92 (207)
T ss_dssp T-SS-EEE-TT
T ss_pred HCCCEEEEEcc
Confidence 99877665543
No 317
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.25 E-value=39 Score=35.03 Aligned_cols=93 Identities=13% Similarity=0.066 Sum_probs=56.4
Q ss_pred CCCCcEEEEEecCCCc-hhh-HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh
Q 015523 14 PSFALNVLVPVGFGTE-EME-AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG 91 (405)
Q Consensus 14 ~~~~~ki~ill~~g~~-~~e-~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~ 91 (405)
.++++||+|+.-++-. ..+ +..+.++|.+.++++.+-..... .+......... ...+. .+.|.+|+.||
T Consensus 287 ~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~-~~~~~~~~~~~---~~~~~--~~~dlvi~lGG--- 357 (569)
T PRK14076 287 RIKPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYN-KLKNRLNEECN---LIDDI--EEISHIISIGG--- 357 (569)
T ss_pred ccCCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhh-hhccccccccc---ccccc--cCCCEEEEECC---
Confidence 4578899999776532 222 34556677788888777543221 11100000000 00111 25799999999
Q ss_pred hhccccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 92 SVRLRDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
|..+++..+.+...+.||.+|-.|
T Consensus 358 ------DGT~L~aa~~~~~~~~PilGin~G 381 (569)
T PRK14076 358 ------DGTVLRASKLVNGEEIPIICINMG 381 (569)
T ss_pred ------cHHHHHHHHHhcCCCCCEEEEcCC
Confidence 456777788777788999999885
No 318
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=63.38 E-value=48 Score=28.46 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=49.1
Q ss_pred CEEEEEeCCCCc-HHH-HHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523 221 PRVLIPIANGSE-EIE-IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 298 (405)
Q Consensus 221 ~~V~il~~~g~~-~~e-~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~ 298 (405)
|++.|+-+...- -.+ .-.+.+.|.. |..++++..... ...++ .+||.||+.++.. .-
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~---------------~~~~l--~~yD~vIlGspi~---~G 59 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRI---------------EEPDL--SDYDRVVIGASIR---YG 59 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhc---------------CccCH--HHCCEEEEECccc---cC
Confidence 356666554332 222 2344567766 777777654431 01223 6799988866531 11
Q ss_pred hcChHHHHHHHHHh--hcCCEEEEEchH
Q 015523 299 QKSRILKKLLKEQK--VAGRIYGAVCSS 324 (405)
Q Consensus 299 ~~~~~l~~~l~~~~--~~~k~i~aic~g 324 (405)
.-.+.+.+++++.. -++|+++.+|.|
T Consensus 60 ~~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 60 HFHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred CcCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 23577888887643 478899999988
No 319
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=62.79 E-value=14 Score=39.83 Aligned_cols=49 Identities=12% Similarity=0.246 Sum_probs=37.6
Q ss_pred CcCEEEEEeCCCCc-------HHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcE
Q 015523 219 RMPRVLIPIANGSE-------EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVK 268 (405)
Q Consensus 219 ~~~~V~il~~~g~~-------~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~ 268 (405)
..++|.|+-.-|.. +..=+.++..|++.|....++.|+-. .++++.|+.
T Consensus 376 ~~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIA-tvQts~~lA 431 (1435)
T KOG0370|consen 376 EVKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIA-TVQTSKGLA 431 (1435)
T ss_pred cccEEEEEccCCccccccceeeeeHHHHHHhhhhcccEEEEECCccc-ccccccccc
Confidence 35788888765543 33446788899999999999999987 899998854
No 320
>PRK09271 flavodoxin; Provisional
Probab=62.71 E-value=73 Score=26.72 Aligned_cols=91 Identities=13% Similarity=0.087 Sum_probs=47.8
Q ss_pred cEEEEEecC--CCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523 18 LNVLVPVGF--GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 95 (405)
Q Consensus 18 ~ki~ill~~--g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~ 95 (405)
|||.|+-.. |.+..=...+.+.|+..++++++...... .+. ....+. .+||+++|..-..+...+
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~-~~~----------~~~~~~--~~~d~vilgt~T~~~G~~ 67 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQ-TLA----------EYPLDP--EDYDLYLLGTWTDNAGRT 67 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccc-ccc----------ccccCc--ccCCEEEEECcccCCCcC
Confidence 477777655 33333344556888888888876644332 110 001122 368999987621111111
Q ss_pred c-cChHHHHHHHHHHHcCCEEEEEccc
Q 015523 96 R-DCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 96 ~-~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
. .-..+.++|.....++|.++.++.|
T Consensus 68 p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 68 PPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred CHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 1 1233444455444467888888775
No 321
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=62.34 E-value=51 Score=30.94 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=56.3
Q ss_pred cCEEEEEeCCCCc-HHH-HHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523 220 MPRVLIPIANGSE-EIE-IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 297 (405)
Q Consensus 220 ~~~V~il~~~g~~-~~e-~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~ 297 (405)
+++|+|+.-.+-. ..+ +..+.+.|...|+++.+...... .... .... ....++. ...+|++++.||
T Consensus 5 ~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~-~~~~-~~~~---~~~~~~~-~~~~d~vi~~GG------ 72 (291)
T PRK02155 5 FKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTAR-NIGL-TGYP---ALTPEEI-GARADLAVVLGG------ 72 (291)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hcCc-cccc---ccChhHh-ccCCCEEEEECC------
Confidence 5679999876653 332 45556678888888666433221 1100 0000 0011222 136899999998
Q ss_pred hhcChHHHHHHHHHhhcCCEEEEEchHHH
Q 015523 298 LQKSRILKKLLKEQKVAGRIYGAVCSSPI 326 (405)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~ 326 (405)
|..+++.++.+...+.++.+|-.|..
T Consensus 73 ---DGt~l~~~~~~~~~~~pilGIn~G~l 98 (291)
T PRK02155 73 ---DGTMLGIGRQLAPYGVPLIGINHGRL 98 (291)
T ss_pred ---cHHHHHHHHHhcCCCCCEEEEcCCCc
Confidence 44777888887777889999988764
No 322
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=61.91 E-value=60 Score=26.50 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=27.9
Q ss_pred CCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchH
Q 015523 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSS 324 (405)
Q Consensus 281 ~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g 324 (405)
.+||.+++........ ...+.+..++++...++|.++.+|+|
T Consensus 49 ~~~d~iilgs~t~~~g--~~p~~~~~fl~~l~~~~k~~avfgtg 90 (140)
T TIGR01754 49 ENYDLVFLGTWTWERG--RTPDEMKDFIAELGYKPSNVAIFGTG 90 (140)
T ss_pred hhCCEEEEEcCeeCCC--cCCHHHHHHHHHhcccCCEEEEEEcC
Confidence 5789998876421111 12346777777766688988888866
No 323
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=61.77 E-value=4.7 Score=34.72 Aligned_cols=99 Identities=13% Similarity=0.072 Sum_probs=50.5
Q ss_pred cCCCchhhHHHHHHHHHhc--CCEEEEEecCCCceeEeccCcEEec-CcccCCCCCCcccEEEEcCCchhhhccccC---
Q 015523 25 GFGTEEMEAVIIVDVLRRA--GAQVTMASVEPQLEVEASSGTRLVA-DTSISNCSHQVFDLIALPGGMPGSVRLRDC--- 98 (405)
Q Consensus 25 ~~g~~~~e~~~~~~~l~~~--~~~v~~vs~~~~~~v~~~~g~~v~~-~~~~~~~~~~~~d~liipgg~~~~~~~~~~--- 98 (405)
+|+-...| ..+...|... ..+++++-+..- ..+...-..+.. =.++++.....||++||.|.. ...+.-.
T Consensus 7 Mp~k~~TE-~qf~rlL~~~~~qv~v~~~~~~~h-~~~~~~~~~l~~~Y~~~~~i~~~~yDGlIITGAp--ve~~~fe~v~ 82 (175)
T cd03131 7 MPDKIQTE-RQFLRLLGNTPLQVEITFIRPSSH-SSKNTPPEHVNRFYETFDDIRDAKFDGLIVTGAP--VEHLPFEQVD 82 (175)
T ss_pred CCCcHHHH-HHHHHHHhcCCccceEEEEecCCC-CCCCCCHHHHHHhccCHHHccccCCCEEEEeCCC--cccCCccccc
Confidence 34444555 3445556544 456777766553 111100000000 024455555689999999983 2222111
Q ss_pred --hHHHHHHHHHHHcCCEEEEEccchHHhhh
Q 015523 99 --EILKKITSKQAEEKRLYGAICAAPAVTLL 127 (405)
Q Consensus 99 --~~~~~~l~~~~~~~~~i~aic~g~~~~La 127 (405)
+++.+.+.-..++...+..+|-|....+-
T Consensus 83 Yw~El~~i~dwa~~~v~stl~iCWgaqaal~ 113 (175)
T cd03131 83 YWEELTEILDWAKTHVTSTLFSCWAAMAALY 113 (175)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 13433333333678999999997554333
No 324
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=61.68 E-value=32 Score=28.53 Aligned_cols=106 Identities=13% Similarity=0.175 Sum_probs=55.9
Q ss_pred CCcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecC----CceeecCCCcEEeeCCCccCcCCCCccEEEEcCCcc
Q 015523 218 DRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVER----STQIVASQGVKIIADKSISDAAESVYDLIILPGGVA 293 (405)
Q Consensus 218 ~~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~----~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~ 293 (405)
....+|..+-.+|++.-=...+.-..+.-+.+-.++-... .+...+.-|.++ +++....+.|+|++-||.+
T Consensus 17 ~~~~kIvf~Gs~GvCtPFaeL~~Y~iR~~~~~~~FiP~~d~e~a~~l~~~~~Gmq~-----~~~~~~~~~D~vVlmGGLA 91 (147)
T PF09897_consen 17 KDGEKIVFIGSPGVCTPFAELFAYAIRDKVKEQYFIPDADLEKARKLEVTDIGMQV-----LGEKKDPHPDVVVLMGGLA 91 (147)
T ss_dssp TT-SEEEEEE-TTTTHHHHHHHHHHTTTS--EEEEEETT-GGG-EEEEEETTEEE------EEEE--S-EEEEEEEGGGG
T ss_pred cCCCeEEEeCCCcccccHHHHHHHHHhhhccceeecCCCChhhhheeeccCccccc-----ccccCCCCCCEEEEEcccc
Confidence 3457999999999875433333333333333444432221 112234456553 2222223489999999984
Q ss_pred chHh-hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC
Q 015523 294 GAER-LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 332 (405)
Q Consensus 294 ~~~~-~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG 332 (405)
+.. -...+++.+.+.+...++ |+++|-=. +..++|
T Consensus 92 -MP~~~v~~e~v~~li~ki~~~~--iiGiCFms-~F~kag 127 (147)
T PF09897_consen 92 -MPKSGVTPEDVNELIKKISPKK--IIGICFMS-MFEKAG 127 (147)
T ss_dssp -STTTS--HHHHHHHHHHHEEEE--EEEEEETT-HHHHTT
T ss_pred -cCCCCCCHHHHHHHHHHhCcCC--EEEEehHH-HHHHcC
Confidence 444 345567888888776655 88888533 334444
No 325
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.61 E-value=51 Score=31.02 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=54.1
Q ss_pred CcEEEEEecCCCc-h-hhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523 17 ALNVLVPVGFGTE-E-MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 94 (405)
Q Consensus 17 ~~ki~ill~~g~~-~-~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~ 94 (405)
++||+|+.-++-. . ..+..+.++|.+.++++.+...... .. ......... ..+.. ..+|.+++.||
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~-~~-~~~~~~~~~---~~~~~-~~~d~vi~~GG------ 71 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAE-VL-PGHGLQTVS---RKLLG-EVCDLVIVVGG------ 71 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc-Ccccccccc---hhhcc-cCCCEEEEEeC------
Confidence 4579999876543 2 2345667778888988877643221 11 000011100 11121 25899999999
Q ss_pred cccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 95 LRDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
|..+++.++.+...+.||.++-.|
T Consensus 72 ---DGt~l~~~~~~~~~~~Pvlgin~G 95 (295)
T PRK01231 72 ---DGSLLGAARALARHNVPVLGINRG 95 (295)
T ss_pred ---cHHHHHHHHHhcCCCCCEEEEeCC
Confidence 345666677776788899998874
No 326
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=60.96 E-value=15 Score=34.37 Aligned_cols=107 Identities=12% Similarity=0.110 Sum_probs=64.3
Q ss_pred CcCEEEEEeCC-CCcHHHHHHHHHHHHhCC--CeEEEEeecCCceeecCCCcEEee-CCCccCcCCCCccEEEEcCCccc
Q 015523 219 RMPRVLIPIAN-GSEEIEIVTIVDILRRAK--VDVVVASVERSTQIVASQGVKIIA-DKSISDAAESVYDLIILPGGVAG 294 (405)
Q Consensus 219 ~~~~V~il~~~-g~~~~e~~~~~~~l~~~~--~~v~~vs~~~~~~v~~~~g~~v~~-~~~l~~~~~~~~D~livpgG~~~ 294 (405)
++.+|+||-.- .-...| ..+...|.... ++++++.+..- ..+-..--.+.. =.+|+++....||++||.|....
T Consensus 34 rpL~I~ILNLMP~K~~TE-~Q~lRlL~ntplqv~i~~~~~~sh-~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGAPvE 111 (300)
T TIGR01001 34 RPLEILILNLMPKKIETE-NQFLRLLSNSPLQVNITLLRTDSR-KSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGAPVE 111 (300)
T ss_pred cceeEEEEecCCccHHHH-HHHHHHhcCCCCceEEEEEEeccc-cCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCCCcC
Confidence 56899998643 335556 44666665555 45666666542 111111111111 13566666689999999997532
Q ss_pred hHhh---hcChHHHHHHHHHhhcCCEEEEEchHHHH
Q 015523 295 AERL---QKSRILKKLLKEQKVAGRIYGAVCSSPIV 327 (405)
Q Consensus 295 ~~~~---~~~~~l~~~l~~~~~~~k~i~aic~g~~~ 327 (405)
.-.+ .-=+++.+.+.+...+..-...+|=|+..
T Consensus 112 ~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqA 147 (300)
T TIGR01001 112 LVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQA 147 (300)
T ss_pred CCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 2111 11246777777777888888999999885
No 327
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=59.37 E-value=76 Score=32.16 Aligned_cols=96 Identities=15% Similarity=0.023 Sum_probs=54.8
Q ss_pred CCCcEEEEEecCCCc-hhh-HHHHHHHHH-hcCCEEEEEecCCCceeEec---cCcE-E-ecCcccCCCCCCcccEEEEc
Q 015523 15 SFALNVLVPVGFGTE-EME-AVIIVDVLR-RAGAQVTMASVEPQLEVEAS---SGTR-L-VADTSISNCSHQVFDLIALP 86 (405)
Q Consensus 15 ~~~~ki~ill~~g~~-~~e-~~~~~~~l~-~~~~~v~~vs~~~~~~v~~~---~g~~-v-~~~~~~~~~~~~~~d~liip 86 (405)
+++++|+|+.-++-. ..+ +..+.++|. ..++++.+-..... ..... .+.. . .+...+.+.. .++|++|+.
T Consensus 192 ~~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~-~l~~~~~~~~~~~~~~~~~~~~~l~-~~~DlVIsi 269 (508)
T PLN02935 192 SDPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKK-ELLSESSYFNFVQTWEDEKEILLLH-TKVDLVITL 269 (508)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhh-hhccccccccccccccccchhhhcc-cCCCEEEEE
Confidence 468899999876543 222 344556676 46777776543221 11110 0100 0 0101111122 258999999
Q ss_pred CCchhhhccccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 87 GGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 87 gg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
|| |..++...+.+.....||.+|-.|
T Consensus 270 GG---------DGTlL~Aar~~~~~~iPILGIN~G 295 (508)
T PLN02935 270 GG---------DGTVLWAASMFKGPVPPVVPFSMG 295 (508)
T ss_pred CC---------cHHHHHHHHHhccCCCcEEEEeCC
Confidence 99 456777777777778899988764
No 328
>PRK06455 riboflavin synthase; Provisional
Probab=58.49 E-value=16 Score=30.57 Aligned_cols=63 Identities=14% Similarity=0.108 Sum_probs=37.4
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHh--cCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCC
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRR--AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG 88 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~--~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg 88 (405)
++||+|+...--..--+.+..+.|++ .+.++.++..-|. .-+++.....++. ..||++|..|-
T Consensus 1 ~~kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa------~ELP~aakkL~~~---~~yDaVIaLG~ 65 (155)
T PRK06455 1 MMKIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGI------KDLPVAAKKLIEE---EGCDIVMALGM 65 (155)
T ss_pred CcEEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCH------HHHHHHHHHHHhc---CCCCEEEEecc
Confidence 47899998542222235788899998 4467777765552 1122222222222 35999999885
No 329
>PLN02256 arogenate dehydrogenase
Probab=58.00 E-value=1.7e+02 Score=27.65 Aligned_cols=155 Identities=16% Similarity=0.091 Sum_probs=77.8
Q ss_pred CCcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523 218 DRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 297 (405)
Q Consensus 218 ~~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~ 297 (405)
+++++|+|+=+ |.--. .+...|.+.|+++..+..+.........|.... ..+++....+.|+|++.-.. .
T Consensus 34 ~~~~kI~IIG~-G~mG~---slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~--~~~~e~~~~~aDvVilavp~---~- 103 (304)
T PLN02256 34 SRKLKIGIVGF-GNFGQ---FLAKTFVKQGHTVLATSRSDYSDIAAELGVSFF--RDPDDFCEEHPDVVLLCTSI---L- 103 (304)
T ss_pred CCCCEEEEEee-CHHHH---HHHHHHHhCCCEEEEEECccHHHHHHHcCCeee--CCHHHHhhCCCCEEEEecCH---H-
Confidence 35678998842 33222 244556667887777765542111112344332 12222211357988885431 1
Q ss_pred hhcChHHHHHH-HHHhhcCCEEEEEch--HHHHHHHcCCCC-C-CeeecCcchhhhhhcCcccCCcEEEcCCeEe-cCCh
Q 015523 298 LQKSRILKKLL-KEQKVAGRIYGAVCS--SPIVLHKHGLLK-A-KKATAHPSVIGKLTNEVVNGTKVVVDGKVIT-SRGL 371 (405)
Q Consensus 298 ~~~~~~l~~~l-~~~~~~~k~i~aic~--g~~~La~aGlL~-g-~~~t~~~~~~~~l~~~~~~~~~~v~dg~iiT-a~g~ 371 (405)
....+++-+ ......+..|..+++ |..+=+-...+. + +-+.+||..-.......+...+++.++.++. ....
T Consensus 104 --~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~ 181 (304)
T PLN02256 104 --STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGER 181 (304)
T ss_pred --HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCC
Confidence 122333333 223457889999999 443322223332 3 3467788765554433445566666665543 2223
Q ss_pred hhHHHHHHHHHHH
Q 015523 372 ANVIDFALAIVSK 384 (405)
Q Consensus 372 ~~~~~~~l~~i~~ 384 (405)
....+....+++.
T Consensus 182 ~~~~~~l~~l~~~ 194 (304)
T PLN02256 182 EARCERFLDIFEE 194 (304)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555553
No 330
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=57.88 E-value=80 Score=29.06 Aligned_cols=81 Identities=14% Similarity=0.199 Sum_probs=53.2
Q ss_pred CcCEEEEEeCCCCc---------HHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEc
Q 015523 219 RMPRVLIPIANGSE---------EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILP 289 (405)
Q Consensus 219 ~~~~V~il~~~g~~---------~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livp 289 (405)
..++|+++...|-. ...+..+...|.+. |+|..+.+.. +++ |+++|+|+|.
T Consensus 145 ~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~~------------------~~I-P~~~d~Lvi~ 204 (271)
T PF09822_consen 145 EKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLAN------------------EEI-PDDADVLVIA 204 (271)
T ss_pred cCceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCcc------------------ccc-CCCCCEEEEE
Confidence 35788888766544 56778889999888 9888776653 223 4679999999
Q ss_pred CCccchHhhhcChHHHHHHHHHhhcC-CEEEEEchH
Q 015523 290 GGVAGAERLQKSRILKKLLKEQKVAG-RIYGAVCSS 324 (405)
Q Consensus 290 gG~~~~~~~~~~~~l~~~l~~~~~~~-k~i~aic~g 324 (405)
|.... -.+.-+..|.++..+| +.+.++...
T Consensus 205 ~P~~~-----ls~~e~~~l~~yl~~GG~ll~~~d~~ 235 (271)
T PF09822_consen 205 GPKTD-----LSEEELYALDQYLMNGGKLLILLDPF 235 (271)
T ss_pred CCCCC-----CCHHHHHHHHHHHHcCCeEEEEECCc
Confidence 86421 2445556666666554 555555444
No 331
>PRK12361 hypothetical protein; Provisional
Probab=56.54 E-value=1.4e+02 Score=30.71 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHHHcCCEEEEEccchH
Q 015523 98 CEILKKITSKQAEEKRLYGAICAAPA 123 (405)
Q Consensus 98 ~~~~~~~l~~~~~~~~~i~aic~g~~ 123 (405)
-++..+||.+..++++.|..-|.+|.
T Consensus 161 l~~a~~~i~~~~~~~~~VlVHC~~G~ 186 (547)
T PRK12361 161 LNQAINWIHRQVRANKSVVVHCALGR 186 (547)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 35678899999999999999999763
No 332
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=55.18 E-value=1e+02 Score=27.54 Aligned_cols=56 Identities=14% Similarity=0.069 Sum_probs=39.5
Q ss_pred CCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCee---ecCcchhhhh
Q 015523 280 ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKA---TAHPSVIGKL 349 (405)
Q Consensus 280 ~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~---t~~~~~~~~l 349 (405)
+..+|+++|... .| +.++.+|+.+ ++++.+||.++...|.. -|||+ |+.......+
T Consensus 67 ~~GvdaiiIaCf--------~D-Pgl~~~Re~~--~~PviGi~eAsv~~A~~---vgrrfsViTtt~rs~~il 125 (230)
T COG4126 67 EQGVDAIIIACF--------SD-PGLAAARERA--AIPVIGICEASVLAALF---VGRRFSVITTTERSRPIL 125 (230)
T ss_pred ccCCcEEEEEec--------CC-hHHHHHHHHh--CCCceehhHHHHHHHHH---hcceEEEEecCcccHHHH
Confidence 356899999764 23 7778888665 57899999999988864 68885 4444433333
No 333
>PRK05569 flavodoxin; Provisional
Probab=55.13 E-value=40 Score=27.45 Aligned_cols=88 Identities=18% Similarity=0.058 Sum_probs=48.9
Q ss_pred cEEEEEecCCCc--hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523 18 LNVLVPVGFGTE--EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 95 (405)
Q Consensus 18 ~ki~ill~~g~~--~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~ 95 (405)
.||.|+.+...- ..=...+.+-++..+.++++...... .+ .++ .+||.|++-....... .
T Consensus 2 ~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~-~~--------------~~~--~~~d~iilgsPty~~~-~ 63 (141)
T PRK05569 2 KKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADA-KV--------------EDV--LEADAVAFGSPSMDNN-N 63 (141)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcC-CH--------------HHH--hhCCEEEEECCCcCCC-c
Confidence 477777766432 22223445666667888887765542 11 233 2689999854311010 1
Q ss_pred ccChHHHHHHHHHH---HcCCEEEEEccchH
Q 015523 96 RDCEILKKITSKQA---EEKRLYGAICAAPA 123 (405)
Q Consensus 96 ~~~~~~~~~l~~~~---~~~~~i~aic~g~~ 123 (405)
...+.+..|+.+.. -++|.++.+++.|+
T Consensus 64 ~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g~ 94 (141)
T PRK05569 64 IEQEEMAPFLDQFKLTPNENKKCILFGSYGW 94 (141)
T ss_pred CChHHHHHHHHHhhccCcCCCEEEEEeCCCC
Confidence 11234556665543 36889988888654
No 334
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=54.47 E-value=55 Score=32.36 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=29.3
Q ss_pred cccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 79 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 79 ~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
..|.++||||+. . +.-+.-+...+-+.+++.|..+||-|
T Consensus 363 ~adGilvPGGFG-~---RGveG~i~Aak~ARen~iP~LGiCLG 401 (585)
T KOG2387|consen 363 SADGILVPGGFG-D---RGVEGKILAAKWARENKIPFLGICLG 401 (585)
T ss_pred cCCeEEeCCccc-c---cchhHHHHHHHHHHhcCCCeEeeehh
Confidence 479999999952 2 23345555667777889999999996
No 335
>PRK07308 flavodoxin; Validated
Probab=54.43 E-value=52 Score=27.05 Aligned_cols=85 Identities=26% Similarity=0.291 Sum_probs=44.1
Q ss_pred CEEEEEeCC--CCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523 221 PRVLIPIAN--GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 298 (405)
Q Consensus 221 ~~V~il~~~--g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~ 298 (405)
.++.|+-+. |....=.-.+.+.|...|..+++...... . .+++ .++|.|++.....+...+
T Consensus 2 ~~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~-~--------------~~~l--~~~d~vi~g~~t~g~G~~ 64 (146)
T PRK07308 2 ALAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTV-D--------------ASDF--EDADIAIVATYTYGDGEL 64 (146)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccC-C--------------HhHh--ccCCEEEEEeCccCCCCC
Confidence 356666544 33322233456777777877776544432 1 1233 568988885432111111
Q ss_pred hcChHHHHHHHH---HhhcCCEEEEEchH
Q 015523 299 QKSRILKKLLKE---QKVAGRIYGAVCSS 324 (405)
Q Consensus 299 ~~~~~l~~~l~~---~~~~~k~i~aic~g 324 (405)
.+.+.++++. ..-+++.++.++.|
T Consensus 65 --p~~~~~fl~~l~~~~l~~k~~~vfG~G 91 (146)
T PRK07308 65 --PDEIVDFYEDLADLDLSGKIYGVVGSG 91 (146)
T ss_pred --CHHHHHHHHHHhcCCCCCCEEEEEeeC
Confidence 2234444444 33457788877775
No 336
>PRK11914 diacylglycerol kinase; Reviewed
Probab=53.73 E-value=28 Score=32.82 Aligned_cols=87 Identities=17% Similarity=0.110 Sum_probs=49.1
Q ss_pred CCCcEEEEEecCCCc----hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCch
Q 015523 15 SFALNVLVPVGFGTE----EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP 90 (405)
Q Consensus 15 ~~~~ki~ill~~g~~----~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~ 90 (405)
+.++|+.|++.|..- ...+..+.+.|++.++++.++..+.... ...+ ..+.....+|.|++.|| .
T Consensus 6 ~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~-----~~~~-----a~~~~~~~~d~vvv~GG-D 74 (306)
T PRK11914 6 HEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHD-----ARHL-----VAAALAKGTDALVVVGG-D 74 (306)
T ss_pred CCCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHH-----HHHH-----HHHHHhcCCCEEEEECC-c
Confidence 346799999887432 2334456778888899887665443200 0111 11111235899999999 3
Q ss_pred hhhccccChHHHHHHHHHHHcCCEEEEEcc
Q 015523 91 GSVRLRDCEILKKITSKQAEEKRLYGAICA 120 (405)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~~~i~aic~ 120 (405)
+ .+.+.+......+.+++-+-.
T Consensus 75 G--------Ti~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 75 G--------VISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred h--------HHHHHhHHhccCCCcEEEEeC
Confidence 3 333334444455667776643
No 337
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=52.77 E-value=1.2e+02 Score=24.66 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=46.4
Q ss_pred cEEEEEecCC--CchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523 18 LNVLVPVGFG--TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 95 (405)
Q Consensus 18 ~ki~ill~~g--~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~ 95 (405)
||+.|+-+.. -...=...+.+.+...+.+++++-.-. . +. .. ..+..+||.+++........
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~--~--------~~--~~--~~~~~~~d~iilgs~t~~~g-- 64 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIG--T--------LA--DA--PLDPENYDLVFLGTWTWERG-- 64 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCCeeEEeccccc--c--------cc--cC--cCChhhCCEEEEEcCeeCCC--
Confidence 4677776553 223333444566766677766321111 0 00 00 11223689988866410111
Q ss_pred ccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 96 RDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
...+.+..|+.+...++|.++.++.|
T Consensus 65 ~~p~~~~~fl~~l~~~~k~~avfgtg 90 (140)
T TIGR01754 65 RTPDEMKDFIAELGYKPSNVAIFGTG 90 (140)
T ss_pred cCCHHHHHHHHHhcccCCEEEEEEcC
Confidence 12346777887766688888888875
No 338
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=52.58 E-value=28 Score=25.95 Aligned_cols=35 Identities=23% Similarity=0.042 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcc
Q 015523 102 KKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 136 (405)
Q Consensus 102 ~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~ 136 (405)
.+++++.+.+...+..+|..|..+=.-+.+|.+|.
T Consensus 2 ~~~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~ 36 (84)
T PF11760_consen 2 KDLLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKD 36 (84)
T ss_dssp ---HHHHCCC-SEEEEES-HHHHHHHHHHH---TT
T ss_pred hhHHHHHHcCCCeEEEEeCcHHHHHHhChhhcccC
Confidence 46789999999999999998887666777887655
No 339
>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....
Probab=51.53 E-value=18 Score=29.44 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=34.0
Q ss_pred CCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHH
Q 015523 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 326 (405)
Q Consensus 281 ~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~ 326 (405)
.+.|+++|-|+.. .++.+..++++++.++.|.|+|+++=+.
T Consensus 44 ~~~diliVeG~v~-----~~~~~~~e~~~~~~~~a~~vIAvGtCA~ 84 (131)
T PF01058_consen 44 EEADILIVEGSVP-----RNMEEALEWLKELRPKAKAVIAVGTCAS 84 (131)
T ss_dssp TTTEEEEEESBEE-----TGGEEHHHHHHHHHGCSSEEEEEHHHHH
T ss_pred cCceEEEEEeecc-----CCchHHHHHHHHHccCCceeEcCCCccc
Confidence 5799999999852 2347889999999999999999988765
No 340
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.18 E-value=37 Score=27.44 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=39.8
Q ss_pred eecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC
Q 015523 261 IVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 332 (405)
Q Consensus 261 v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG 332 (405)
..+..|..+. ..++. ...|++++-||.+-+..-...+...+++++. .++.++++|-=. +..++|
T Consensus 69 ~~~d~G~ql~---e~e~~--n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~--~~kkliGvCfm~-mF~rag 132 (154)
T COG4090 69 ELTDHGYQLG---EREEL--NSADVVVLLGGLAMPKIGVTPDDAKELLEEL--GNKKLIGVCFMN-MFERAG 132 (154)
T ss_pred eeeccceecC---Ccccc--ccccEEEEEcccccCcCCCCHHHHHHHHHhc--CCCceEEeeHHH-HHHHcC
Confidence 3455677662 23333 5589999999984333334556777777743 345788888643 445665
No 341
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=50.91 E-value=61 Score=26.90 Aligned_cols=108 Identities=13% Similarity=0.047 Sum_probs=58.2
Q ss_pred CCCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCC----ceeEeccCcEEecCcccCCCCCCcccEEEEcCCch
Q 015523 15 SFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQ----LEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP 90 (405)
Q Consensus 15 ~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~----~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~ 90 (405)
....||.++=.+|+..-=+....-..|....+..++....- .-...+-|+++.- +..++ +.|+|++-||..
T Consensus 17 ~~~~kIvf~Gs~GvCtPFaeL~~Y~iR~~~~~~~FiP~~d~e~a~~l~~~~~Gmq~~~----~~~~~-~~D~vVlmGGLA 91 (147)
T PF09897_consen 17 KDGEKIVFIGSPGVCTPFAELFAYAIRDKVKEQYFIPDADLEKARKLEVTDIGMQVLG----EKKDP-HPDVVVLMGGLA 91 (147)
T ss_dssp TT-SEEEEEE-TTTTHHHHHHHHHHTTTS--EEEEEETT-GGG-EEEEEETTEEE-EE----EE--S--EEEEEEEGGGG
T ss_pred cCCCeEEEeCCCcccccHHHHHHHHHhhhccceeecCCCChhhhheeeccCccccccc----ccCCC-CCCEEEEEcccc
Confidence 45678999999998754333333344444556666654331 1234456666411 11222 389999999964
Q ss_pred hhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCC
Q 015523 91 GSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGL 131 (405)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agl 131 (405)
.+..-...+++.+.+.+...+. |.++|-= . +..++|-
T Consensus 92 MP~~~v~~e~v~~li~ki~~~~--iiGiCFm-s-~F~kagW 128 (147)
T PF09897_consen 92 MPKSGVTPEDVNELIKKISPKK--IIGICFM-S-MFEKAGW 128 (147)
T ss_dssp STTTS--HHHHHHHHHHHEEEE--EEEEEET-T-HHHHTTH
T ss_pred cCCCCCCHHHHHHHHHHhCcCC--EEEEehH-H-HHHHcCC
Confidence 3333334466777777665444 9999984 3 4677774
No 342
>PRK06756 flavodoxin; Provisional
Probab=50.20 E-value=75 Score=26.11 Aligned_cols=88 Identities=13% Similarity=0.055 Sum_probs=49.9
Q ss_pred CcEEEEEecCCCchhh--HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523 17 ALNVLVPVGFGTEEME--AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 94 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e--~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~ 94 (405)
|+||.|+-+...--.+ ...+.+.|+..|.++++...... + ...++ .+||.+++-.-..+...
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~-~-------------~~~~~--~~~d~vi~gspt~~~g~ 64 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDS-P-------------EASIL--EQYDGIILGAYTWGDGD 64 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhcc-C-------------CHHHH--hcCCeEEEEeCCCCCCC
Confidence 3588888766444333 34456777777888887765432 1 01223 36899888542111111
Q ss_pred cccChHHHHHHHHH---HHcCCEEEEEccch
Q 015523 95 LRDCEILKKITSKQ---AEEKRLYGAICAAP 122 (405)
Q Consensus 95 ~~~~~~~~~~l~~~---~~~~~~i~aic~g~ 122 (405)
+ .+.+.+|+.+. .-++++++.+++++
T Consensus 65 ~--p~~~~~fl~~l~~~~l~~k~~~~fgt~~ 93 (148)
T PRK06756 65 L--PDDFLDFYDAMDSIDLTGKKAAVFGSCD 93 (148)
T ss_pred C--cHHHHHHHHHHhcCCCCCCEEEEEeCCC
Confidence 1 23467776654 23688988887743
No 343
>PLN02727 NAD kinase
Probab=49.92 E-value=88 Score=34.18 Aligned_cols=96 Identities=17% Similarity=0.102 Sum_probs=56.2
Q ss_pred CCCcEEEEEecCCCchh-hHHHHHHHHHhc-CCEEEEEecCCCceeEeccCcE---EecCcccCCCCCCcccEEEEcCCc
Q 015523 15 SFALNVLVPVGFGTEEM-EAVIIVDVLRRA-GAQVTMASVEPQLEVEASSGTR---LVADTSISNCSHQVFDLIALPGGM 89 (405)
Q Consensus 15 ~~~~ki~ill~~g~~~~-e~~~~~~~l~~~-~~~v~~vs~~~~~~v~~~~g~~---v~~~~~~~~~~~~~~d~liipgg~ 89 (405)
.++++|+|+.-.+-... .+..+.++|... ++++.+-..... ......++. ..-.....+.. ...|++|+.||
T Consensus 676 ~p~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~-~l~~~~~~~~~~~~~~~~~~el~-~~~DLVIvLGG- 752 (986)
T PLN02727 676 STPKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHD-IFARIPGFGFVQTFYSQDTSDLH-ERVDFVACLGG- 752 (986)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHH-Hhhccccccccceecccchhhcc-cCCCEEEEECC-
Confidence 46789999997764332 334456777765 776655432221 110111110 00001112222 25899999999
Q ss_pred hhhhccccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 90 PGSVRLRDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
|..+++..+.+.....||.+|-.|
T Consensus 753 --------DGTlLrAar~~~~~~iPILGINlG 776 (986)
T PLN02727 753 --------DGVILHASNLFRGAVPPVVSFNLG 776 (986)
T ss_pred --------cHHHHHHHHHhcCCCCCEEEEeCC
Confidence 456777888887788999998874
No 344
>PRK06703 flavodoxin; Provisional
Probab=49.77 E-value=46 Score=27.53 Aligned_cols=89 Identities=13% Similarity=0.065 Sum_probs=45.8
Q ss_pred CcEEEEEecCCCc--hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523 17 ALNVLVPVGFGTE--EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 94 (405)
Q Consensus 17 ~~ki~ill~~g~~--~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~ 94 (405)
|+|+.|+.+...- ..=...+.+.|+..++++++...... . ..++ .+||.|++..-..+...
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~-~--------------~~~l--~~~d~viigspt~~~g~ 63 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGM-D--------------AEEL--LAYDGIILGSYTWGDGD 63 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhC-C--------------HHHH--hcCCcEEEEECCCCCCc
Confidence 3578887766433 33334455667777888887755431 0 1123 26888888431110111
Q ss_pred cc-cChHHHHHHHHHHHcCCEEEEEccch
Q 015523 95 LR-DCEILKKITSKQAEEKRLYGAICAAP 122 (405)
Q Consensus 95 ~~-~~~~~~~~l~~~~~~~~~i~aic~g~ 122 (405)
.. .-..+.+++.+..-+++.++.++.|+
T Consensus 64 ~p~~~~~f~~~l~~~~l~~k~~~vfg~g~ 92 (151)
T PRK06703 64 LPYEAEDFHEDLENIDLSGKKVAVFGSGD 92 (151)
T ss_pred CcHHHHHHHHHHhcCCCCCCEEEEEccCC
Confidence 11 11233444443334577887777653
No 345
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=49.61 E-value=24 Score=35.50 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=51.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCC--CeEEEEeecCCceeecCCCcEEeeCCCccCc-CCCCccEEEEcCCccchHh
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAK--VDVVVASVERSTQIVASQGVKIIADKSISDA-AESVYDLIILPGGVAGAER 297 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~--~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~-~~~~~D~livpgG~~~~~~ 297 (405)
.|+-+++.|.++... ..+++.|...+ .-|.++..+ ++.+| .+..+ ...-||+++|.-|.+.+
T Consensus 13 ~rl~~LlID~YDSyT-fNiy~ll~~~~~vp~V~~vh~~-----------~~~~d-~~~~l~q~~~FDaIVVgPGPG~P-- 77 (767)
T KOG1224|consen 13 PRLRTLLIDNYDSYT-FNIYQLLSTINGVPPVVIVHDE-----------WTWED-AYHYLYQDVAFDAIVVGPGPGSP-- 77 (767)
T ss_pred hheeEEEEecccchh-hhHHHHHHHhcCCCcEEEEecc-----------ccCHH-HHHHHhhccccceEEecCCCCCC--
Confidence 456666667665555 34677776664 222222222 22222 22222 11459999986665432
Q ss_pred hhcChHHHHHHHHHhhc--CCEEEEEchHHHHHHH
Q 015523 298 LQKSRILKKLLKEQKVA--GRIYGAVCSSPIVLHK 330 (405)
Q Consensus 298 ~~~~~~l~~~l~~~~~~--~k~i~aic~g~~~La~ 330 (405)
.-++-+..+.+.... .-||.+||-|-..|+-
T Consensus 78 --~~a~d~gI~~rl~~~~~~iPilGICLGfQal~l 110 (767)
T KOG1224|consen 78 --MCAADIGICLRLLLECRDIPILGICLGFQALGL 110 (767)
T ss_pred --CcHHHHHHHHHHHHhcCCCceeeeehhhHhHhh
Confidence 123344444444443 4999999999987763
No 346
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=49.34 E-value=34 Score=30.01 Aligned_cols=100 Identities=17% Similarity=0.202 Sum_probs=53.4
Q ss_pred cCEEEEEeCCCC--cHHHHHHHHHHHHh-CCCeEEEEeecCCce--eecCCCcEEe---eCCCccCcCCCCccEEEEcCC
Q 015523 220 MPRVLIPIANGS--EEIEIVTIVDILRR-AKVDVVVASVERSTQ--IVASQGVKII---ADKSISDAAESVYDLIILPGG 291 (405)
Q Consensus 220 ~~~V~il~~~g~--~~~e~~~~~~~l~~-~~~~v~~vs~~~~~~--v~~~~g~~v~---~~~~l~~~~~~~~D~livpgG 291 (405)
|++|+|+-+... ...=.-.+.+.+.+ .|.+++++......+ +....+.... +....+++ .++|.|++...
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~gsP 78 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDEL--ADYDAIIFGTP 78 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHH--HhCCEEEEEec
Confidence 458888887643 33333446667776 788888887653201 1001111100 11124444 78999888654
Q ss_pred ccchHhhhcChHHHHHHHHHh-------hcCCEEEEEchH
Q 015523 292 VAGAERLQKSRILKKLLKEQK-------VAGRIYGAVCSS 324 (405)
Q Consensus 292 ~~~~~~~~~~~~l~~~l~~~~-------~~~k~i~aic~g 324 (405)
. ..-.-.+.+..|+.+.. -.+|+++.++++
T Consensus 79 t---y~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~ 115 (200)
T PRK03767 79 T---RFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTST 115 (200)
T ss_pred c---cCCCchHHHHHHHHHhccccccCCccCCEEEEEEeC
Confidence 3 12123455666666542 236777777765
No 347
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=48.75 E-value=31 Score=29.75 Aligned_cols=39 Identities=21% Similarity=0.127 Sum_probs=30.8
Q ss_pred CCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEch
Q 015523 280 ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCS 323 (405)
Q Consensus 280 ~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~ 323 (405)
+.++|+++|-|... .+....++.+.++..+-|+|+++++
T Consensus 73 PR~ADillVeG~VT-----~~m~~~l~~~~e~~p~pK~VIAvGa 111 (181)
T PRK14817 73 PRQADLLMVVGTVN-----CKQAPILQRVYEQMADPKWVMAFGV 111 (181)
T ss_pred CcceeEEEEEecCC-----ccchHHHHHHHHHcccCCEEEEecc
Confidence 47899999999752 2345678888889999999999864
No 348
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.64 E-value=82 Score=29.14 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=27.0
Q ss_pred cccEEEEcCCchhhhccccChHHHHHHHHHHH--cCCEEEEEccc
Q 015523 79 VFDLIALPGGMPGSVRLRDCEILKKITSKQAE--EKRLYGAICAA 121 (405)
Q Consensus 79 ~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~--~~~~i~aic~g 121 (405)
++|.+++.|| |..+++.++.+.. .+.||.++-.|
T Consensus 35 ~~Dlvi~iGG---------DGT~L~a~~~~~~~~~~iPilGIN~G 70 (265)
T PRK04885 35 NPDIVISVGG---------DGTLLSAFHRYENQLDKVRFVGVHTG 70 (265)
T ss_pred CCCEEEEECC---------cHHHHHHHHHhcccCCCCeEEEEeCC
Confidence 4799999999 4567777777666 68899998875
No 349
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=48.59 E-value=44 Score=30.73 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=38.2
Q ss_pred CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEE
Q 015523 219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKI 269 (405)
Q Consensus 219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v 269 (405)
+.|||.|--=||+...-+..+.+.|.+.+ +|.+++|..+ .--+++.+++
T Consensus 4 ~~M~ILltNDDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~-~Sg~g~ait~ 52 (257)
T PRK13932 4 KKPHILVCNDDGIEGEGIHVLAASMKKIG-RVTVVAPAEP-HSGMSHAMTL 52 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHhCC-CEEEEcCCCC-CCCCcccccC
Confidence 45788888888999999999999999887 8999999986 3333333443
No 350
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=47.56 E-value=27 Score=30.60 Aligned_cols=100 Identities=16% Similarity=0.084 Sum_probs=52.3
Q ss_pred cEEEEEecCCC--chhhHHHHHHHHHh-cCCEEEEEecCCCce--eEeccCcEEe---cCcccCCCCCCcccEEEEcCCc
Q 015523 18 LNVLVPVGFGT--EEMEAVIIVDVLRR-AGAQVTMASVEPQLE--VEASSGTRLV---ADTSISNCSHQVFDLIALPGGM 89 (405)
Q Consensus 18 ~ki~ill~~g~--~~~e~~~~~~~l~~-~~~~v~~vs~~~~~~--v~~~~g~~v~---~~~~~~~~~~~~~d~liipgg~ 89 (405)
+||+|+-+... +..=+..+.+-+++ .|.+++++......+ +....+.... +....+++ .++|.|++-...
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~gsPt 79 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDEL--ADYDAIIFGTPT 79 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHH--HhCCEEEEEecc
Confidence 58988887643 33334455666666 789998887643211 1101111100 00113333 368998885431
Q ss_pred hhhhccccChHHHHHHHHHH-------HcCCEEEEEccch
Q 015523 90 PGSVRLRDCEILKKITSKQA-------EEKRLYGAICAAP 122 (405)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~-------~~~~~i~aic~g~ 122 (405)
..-.-.+.+..|+.+.. -.+|+++.+++++
T Consensus 80 ---y~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g 116 (200)
T PRK03767 80 ---RFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTG 116 (200)
T ss_pred ---cCCCchHHHHHHHHHhccccccCCccCCEEEEEEeCC
Confidence 11122355666666542 2378888887754
No 351
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=47.45 E-value=1.5e+02 Score=27.29 Aligned_cols=80 Identities=11% Similarity=0.052 Sum_probs=48.6
Q ss_pred CCcEEEEEecCCCc---------hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEc
Q 015523 16 FALNVLVPVGFGTE---------EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALP 86 (405)
Q Consensus 16 ~~~ki~ill~~g~~---------~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liip 86 (405)
..++|+++..+|-. ...+..+.+.|++. |+|..+.... .+++ .++|+|+|.
T Consensus 145 ~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~~------------------~~IP-~~~d~Lvi~ 204 (271)
T PF09822_consen 145 EKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLAN------------------EEIP-DDADVLVIA 204 (271)
T ss_pred cCceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCcc------------------cccC-CCCCEEEEE
Confidence 34567777655433 45666667777776 7666665442 2453 589999998
Q ss_pred CCchhhhccccChHHHHHHHHHHHcCCEEEEEcc
Q 015523 87 GGMPGSVRLRDCEILKKITSKQAEEKRLYGAICA 120 (405)
Q Consensus 87 gg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~ 120 (405)
|-. ..+ .+.-...|.++..+|..+...-.
T Consensus 205 ~P~---~~l--s~~e~~~l~~yl~~GG~ll~~~d 233 (271)
T PF09822_consen 205 GPK---TDL--SEEELYALDQYLMNGGKLLILLD 233 (271)
T ss_pred CCC---CCC--CHHHHHHHHHHHHcCCeEEEEEC
Confidence 862 112 34555567777777766554433
No 352
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=47.31 E-value=1.1e+02 Score=28.53 Aligned_cols=95 Identities=13% Similarity=0.190 Sum_probs=55.1
Q ss_pred cCEEEEEeCC--CCc--HHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch
Q 015523 220 MPRVLIPIAN--GSE--EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 295 (405)
Q Consensus 220 ~~~V~il~~~--g~~--~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~ 295 (405)
|+|++|++=+ |.. ...+..+...|.+.++++.+...+...... ....+.....+|.+++.||-
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~----------~~~~~~~~~~~d~ivv~GGD--- 67 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAA----------RYVEEARKFGVDTVIAGGGD--- 67 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHH----------HHHHHHHhcCCCEEEEECCC---
Confidence 4688888877 432 233445677888889988877665420110 00111111458999999984
Q ss_pred HhhhcChHHHHHHHHHhh-cCC-EEEEEchHHH-HHHH-cCC
Q 015523 296 ERLQKSRILKKLLKEQKV-AGR-IYGAVCSSPI-VLHK-HGL 333 (405)
Q Consensus 296 ~~~~~~~~l~~~l~~~~~-~~k-~i~aic~g~~-~La~-aGl 333 (405)
..+.+.++.... ... +++-+=.|+. .+++ .|+
T Consensus 68 ------GTl~~v~~~l~~~~~~~~lgiiP~Gt~N~~a~~l~i 103 (293)
T TIGR00147 68 ------GTINEVVNALIQLDDIPALGILPLGTANDFARSLGI 103 (293)
T ss_pred ------ChHHHHHHHHhcCCCCCcEEEEcCcCHHHHHHHcCC
Confidence 355555665544 333 5665666666 5555 565
No 353
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=47.23 E-value=62 Score=25.78 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=46.8
Q ss_pred EEEEeCC-CCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcC
Q 015523 223 VLIPIAN-GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKS 301 (405)
Q Consensus 223 V~il~~~-g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~ 301 (405)
|.+.+.+ ..+..-...+...|+..||++.....+- .++...+.+...+.|++.+.+.. ......-
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~v------------p~e~~~~~a~~~~~d~V~iS~~~--~~~~~~~ 67 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQ------------TPEEIVEAAIQEDVDVIGLSSLS--GGHMTLF 67 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCC------------CHHHHHHHHHHcCCCEEEEcccc--hhhHHHH
Confidence 4444444 4688888889999999999999886653 12222233333678999997753 2222233
Q ss_pred hHHHHHHHHH
Q 015523 302 RILKKLLKEQ 311 (405)
Q Consensus 302 ~~l~~~l~~~ 311 (405)
+++++.|++.
T Consensus 68 ~~~~~~L~~~ 77 (122)
T cd02071 68 PEVIELLREL 77 (122)
T ss_pred HHHHHHHHhc
Confidence 5555555554
No 354
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=46.93 E-value=34 Score=29.64 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=30.0
Q ss_pred CCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEch
Q 015523 280 ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCS 323 (405)
Q Consensus 280 ~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~ 323 (405)
|.++|+++|-|... .+..+.++.+.++..+-|+|+|+++
T Consensus 72 Pr~aDvllV~G~vt-----~~~~~~l~~~~e~mp~pk~VIA~Ga 110 (183)
T PRK06411 72 PRQADLMIVAGTLT-----NKMAPALRRLYDQMPEPKWVISMGS 110 (183)
T ss_pred CCceeEEEEEeCCC-----ccchHHHHHHHHHcCcCCeEEEEec
Confidence 46799999999852 1346777777778888999999865
No 355
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=46.24 E-value=48 Score=29.10 Aligned_cols=91 Identities=14% Similarity=0.172 Sum_probs=55.0
Q ss_pred cCEEEEEeCCC-CcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523 220 MPRVLIPIANG-SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 298 (405)
Q Consensus 220 ~~~V~il~~~g-~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~ 298 (405)
.+||.+...+| .++.....+...|+..||++.....+- .++.-.+.+...++|+|.+-.-. ...+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~------------p~~~l~~~~~~~~~d~v~lS~~~--~~~~ 147 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDV------------PPEEFVEAVKEHKPDILGLSALM--TTTM 147 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCC------------CHHHHHHHHHHcCCCEEEEeccc--cccH
Confidence 36888777775 688888899999999999997765432 22222333334678988886642 2223
Q ss_pred hcChHHHHHHHHHhhcCCEEEEEchH
Q 015523 299 QKSRILKKLLKEQKVAGRIYGAVCSS 324 (405)
Q Consensus 299 ~~~~~l~~~l~~~~~~~k~i~aic~g 324 (405)
..-..+++.|++...+.++...+|.+
T Consensus 148 ~~~~~~i~~lr~~~~~~~~~i~vGG~ 173 (201)
T cd02070 148 GGMKEVIEALKEAGLRDKVKVMVGGA 173 (201)
T ss_pred HHHHHHHHHHHHCCCCcCCeEEEECC
Confidence 33455556665543322444444433
No 356
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=46.12 E-value=22 Score=34.57 Aligned_cols=102 Identities=13% Similarity=0.116 Sum_probs=64.0
Q ss_pred HHHHHHHhcChHHHHHHHHhcccccccC--cc-ccccccccccccCCcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEE
Q 015523 176 ALCLVEQLFGESVAKEIGELLLMHNADN--SL-KKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVV 252 (405)
Q Consensus 176 ~l~ii~~~~g~~~a~~~a~~l~~~~~~~--~~-~~~~~~~~~~~~~~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~ 252 (405)
+..+++++.|..+++-+. .....+ ++ +--.|...+ ...||++|--||.-+.=+.....+|...++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~ 73 (372)
T PLN00118 2 AAQLLRRLLGNRLAQILG----ASSSSSGAFSSSARAFSSSS----TPITATLFPGDGIGPEIAESVKQVFTAAGVPIEW 73 (372)
T ss_pred hHHHHHHHhcccchhhhc----cccccCCCCcHHHHhhccCC----CCeEEEEECCCcccHHHHHHHHHHHHhcCCCeEE
Confidence 457888888887665442 222211 11 222222211 2478999999999888888899999887765555
Q ss_pred EeecCCceeecCCCcEEeeCCCccCcCCCCccEEEE
Q 015523 253 ASVERSTQIVASQGVKIIADKSISDAAESVYDLIIL 288 (405)
Q Consensus 253 vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~liv 288 (405)
....-|.......|-. .|+..++.+ ..+|+++.
T Consensus 74 ~~~~~G~~~~~~~G~~-lp~~~l~~~--~~~da~L~ 106 (372)
T PLN00118 74 EEHYVGTTVDPRTGSF-LTWESLESV--RRNKVGLK 106 (372)
T ss_pred EEEeCcHHHHHhcCCc-CCHHHHHHH--HHCCEEEE
Confidence 5544331333445533 456678887 78999987
No 357
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=46.11 E-value=68 Score=29.90 Aligned_cols=95 Identities=11% Similarity=0.155 Sum_probs=52.6
Q ss_pred CcEEEEEecC--CCc--hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh
Q 015523 17 ALNVLVPVGF--GTE--EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 92 (405)
Q Consensus 17 ~~ki~ill~~--g~~--~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~ 92 (405)
|+|++|++.+ |-. ...+..+...|.+.++++.+...+...... .+ ... ... ..+|.+++.||
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~-----~~-~~~---~~~-~~~d~ivv~GG---- 66 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAA-----RY-VEE---ARK-FGVDTVIAGGG---- 66 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHH-----HH-HHH---HHh-cCCCEEEEECC----
Confidence 4689999988 432 233455677888889988877655421110 00 001 111 25899999999
Q ss_pred hccccChHHHHHHHHHHH-cCC-EEEEEccc-hHHhhhh-cCC
Q 015523 93 VRLRDCEILKKITSKQAE-EKR-LYGAICAA-PAVTLLP-WGL 131 (405)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~-~~~-~i~aic~g-~~~~La~-agl 131 (405)
|..+.+.++.... ... +++.+-.| +- .+++ .|+
T Consensus 67 -----DGTl~~v~~~l~~~~~~~~lgiiP~Gt~N-~~a~~l~i 103 (293)
T TIGR00147 67 -----DGTINEVVNALIQLDDIPALGILPLGTAN-DFARSLGI 103 (293)
T ss_pred -----CChHHHHHHHHhcCCCCCcEEEEcCcCHH-HHHHHcCC
Confidence 3445555555544 334 45545433 23 3565 554
No 358
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=45.71 E-value=1.5e+02 Score=23.36 Aligned_cols=83 Identities=17% Similarity=0.130 Sum_probs=51.0
Q ss_pred CCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHH
Q 015523 228 ANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKL 307 (405)
Q Consensus 228 ~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~ 307 (405)
.-|.+..-...+...|...|..+..+.... .+. ..+... .+-|.+|+.+-.+ +++++.++
T Consensus 7 G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~--~~~----------~~~~~~--~~~d~vi~iS~sG------~t~~~~~~ 66 (128)
T cd05014 7 GVGKSGHIARKIAATLSSTGTPAFFLHPTE--ALH----------GDLGMV--TPGDVVIAISNSG------ETDELLNL 66 (128)
T ss_pred eCcHhHHHHHHHHHHhhcCCCceEEcccch--hhc----------cccCcC--CCCCEEEEEeCCC------CCHHHHHH
Confidence 334444444556666666677766653221 110 012222 4458888877532 67899999
Q ss_pred HHHHhhcCCEEEEEchHH-HHHHH
Q 015523 308 LKEQKVAGRIYGAVCSSP-IVLHK 330 (405)
Q Consensus 308 l~~~~~~~k~i~aic~g~-~~La~ 330 (405)
++.+.++|.++++++... --|++
T Consensus 67 ~~~a~~~g~~vi~iT~~~~s~la~ 90 (128)
T cd05014 67 LPHLKRRGAPIIAITGNPNSTLAK 90 (128)
T ss_pred HHHHHHCCCeEEEEeCCCCCchhh
Confidence 999999999999998854 34444
No 359
>PRK13055 putative lipid kinase; Reviewed
Probab=44.66 E-value=96 Score=29.65 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=51.1
Q ss_pred cCEEEEEeCCCCc----HHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch
Q 015523 220 MPRVLIPIANGSE----EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 295 (405)
Q Consensus 220 ~~~V~il~~~g~~----~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~ 295 (405)
|+|+.||+-+..- ...+..+...|...++++++...+.. +- .......+.....+|.|++.||-
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~-~~--------~a~~~~~~~~~~~~d~vvv~GGD--- 69 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPE-PN--------SAKNEAKRAAEAGFDLIIAAGGD--- 69 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecC-Cc--------cHHHHHHHHhhcCCCEEEEECCC---
Confidence 5788888765322 23345667888899988776544421 00 00001111112457899998884
Q ss_pred HhhhcChHHHHHHHHHhh--cCCEEEEEchHHH--HHHHcCC
Q 015523 296 ERLQKSRILKKLLKEQKV--AGRIYGAVCSSPI--VLHKHGL 333 (405)
Q Consensus 296 ~~~~~~~~l~~~l~~~~~--~~k~i~aic~g~~--~La~aGl 333 (405)
..+.+.++.+.. ...+++-+=.|+. +.-..|+
T Consensus 70 ------GTl~evvngl~~~~~~~~LgiiP~GTgNdfAr~Lgi 105 (334)
T PRK13055 70 ------GTINEVVNGIAPLEKRPKMAIIPAGTTNDYARALKI 105 (334)
T ss_pred ------CHHHHHHHHHhhcCCCCcEEEECCCchhHHHHHcCC
Confidence 234444454443 2345665555555 3334455
No 360
>PRK13054 lipid kinase; Reviewed
Probab=44.65 E-value=88 Score=29.33 Aligned_cols=63 Identities=16% Similarity=0.108 Sum_probs=36.4
Q ss_pred CCcEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCC
Q 015523 16 FALNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG 88 (405)
Q Consensus 16 ~~~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg 88 (405)
+|+|+.|++.+... ...+......|.+.++++++......... ..+. .+.....+|.|++.||
T Consensus 2 ~~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a-----~~~a-----~~~~~~~~d~vvv~GG 65 (300)
T PRK13054 2 TFPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKGDA-----ARYV-----EEALALGVATVIAGGG 65 (300)
T ss_pred CCceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCCcH-----HHHH-----HHHHHcCCCEEEEECC
Confidence 46788888876542 34455566778888888776543321010 0011 1111135899999999
No 361
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=44.26 E-value=1.5e+02 Score=26.08 Aligned_cols=41 Identities=10% Similarity=0.112 Sum_probs=27.6
Q ss_pred CCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHH
Q 015523 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP 325 (405)
Q Consensus 281 ~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~ 325 (405)
.+||+||+...... . -+++-.+.|+++.++|+.++++-.++
T Consensus 51 ~~~Dvvv~~~~~~~--~--l~~~~~~al~~~v~~Ggglv~lH~~~ 91 (217)
T PF06283_consen 51 KGYDVVVFYNTGGD--E--LTDEQRAALRDYVENGGGLVGLHGAA 91 (217)
T ss_dssp CT-SEEEEE-SSCC--G--S-HHHHHHHHHHHHTT-EEEEEGGGG
T ss_pred cCCCEEEEECCCCC--c--CCHHHHHHHHHHHHcCCCEEEEcccc
Confidence 78999999876421 1 35677778888889999999998443
No 362
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=44.01 E-value=36 Score=28.30 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=26.8
Q ss_pred CCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEch
Q 015523 280 ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCS 323 (405)
Q Consensus 280 ~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~ 323 (405)
|.+.|+++|.|... . +..+.++-+.++..+-|+|+|+++
T Consensus 55 Pr~aDvllVtG~vt--~---~~~~~l~~~~e~~p~pk~VIA~Gs 93 (145)
T TIGR01957 55 PRQADVMIVAGTVT--K---KMAPALRRLYDQMPEPKWVISMGA 93 (145)
T ss_pred CCcceEEEEecCCc--H---HHHHHHHHHHHhccCCceEEEecc
Confidence 36699999999752 1 234455555556677999998864
No 363
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=43.85 E-value=35 Score=31.16 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=32.5
Q ss_pred CCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHH
Q 015523 279 AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 326 (405)
Q Consensus 279 ~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~ 326 (405)
++.++|.+++.|| |..+++..+.+...+.||.+|-.|..
T Consensus 22 ~~~~~Dlvi~iGG---------DGTlL~a~~~~~~~~~PvlGIN~G~l 60 (246)
T PRK04761 22 PIEEADVIVALGG---------DGFMLQTLHRYMNSGKPVYGMNRGSV 60 (246)
T ss_pred CcccCCEEEEECC---------CHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 4477899999998 45788888888888999999998864
No 364
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=43.38 E-value=22 Score=29.94 Aligned_cols=92 Identities=12% Similarity=0.017 Sum_probs=50.2
Q ss_pred CCcEEEEEecC---CCchhhHHHHHHHHHhcCC---EEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCc
Q 015523 16 FALNVLVPVGF---GTEEMEAVIIVDVLRRAGA---QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGM 89 (405)
Q Consensus 16 ~~~ki~ill~~---g~~~~e~~~~~~~l~~~~~---~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~ 89 (405)
.+.||+|+... .....-+.+..+.|.+.|. +++++..-|. .-+++....... ..+||++|..|--
T Consensus 9 ~~~riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA------~EiP~~a~~l~~---~~~yDaiIaLG~V 79 (158)
T PRK12419 9 TPQRIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFDVPGA------FEIPLHAQTLAK---TGRYAAIVAAALV 79 (158)
T ss_pred CCCEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH------HHHHHHHHHHHh---cCCCCEEEEEEEE
Confidence 45799999844 3445667788888988873 4666655442 112222222222 1369999988731
Q ss_pred -h-hh--hccccChHHHHHHHHHHHcCCEEE
Q 015523 90 -P-GS--VRLRDCEILKKITSKQAEEKRLYG 116 (405)
Q Consensus 90 -~-~~--~~~~~~~~~~~~l~~~~~~~~~i~ 116 (405)
. .. .++..+.......+-..+.+.||+
T Consensus 80 IrGeT~H~e~V~~~v~~gl~~vsl~~~~PV~ 110 (158)
T PRK12419 80 VDGGIYRHEFVAQAVIDGLMRVQLDTEVPVF 110 (158)
T ss_pred EcCCCchhHHHHHHHHHHHHHHHhccCCCEE
Confidence 0 01 112223333344444556677765
No 365
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=42.60 E-value=3.1e+02 Score=26.24 Aligned_cols=139 Identities=15% Similarity=0.163 Sum_probs=70.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 300 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~ 300 (405)
+|+.|+.-++....-...+.+.|...|+++.++...++++-.+...+.-.. ..+.+...+..|.|+-.||- ..-
T Consensus 25 ~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~-~~~~~~~~~r~d~IIaiGGG-sv~---- 98 (345)
T cd08195 25 SKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLY-DALLEAGLDRKSLIIALGGG-VVG---- 98 (345)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHH-HHHHHcCCCCCCeEEEECCh-HHH----
Confidence 678787766666544555677788888877766555441111111000000 01111122345888877773 222
Q ss_pred ChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC-CCCCCeeecCcchhhhhhcCcccCCcEEEcCCeEecCC
Q 015523 301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG-LLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRG 370 (405)
Q Consensus 301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG-lL~g~~~t~~~~~~~~l~~~~~~~~~~v~dg~iiTa~g 370 (405)
++-.++...+..|.+++.+-+-. ++..+ -..++....+...+ .+.........++.|-.++.+-.
T Consensus 99 --D~ak~vA~~~~rgip~i~VPTT~--~a~vds~~~~k~~i~~~~~k-n~~g~~~~P~~viiD~~~l~tlP 164 (345)
T cd08195 99 --DLAGFVAATYMRGIDFIQIPTTL--LAQVDSSVGGKTGVNHPLGK-NLIGAFYQPKLVLIDTDFLKTLP 164 (345)
T ss_pred --hHHHHHHHHHhcCCCeEEcchhH--HHHhhccCCCcceecCCCCC-ceecccCCCCEEEEehHHhhhCC
Confidence 33345554567789999998864 33322 23343333222211 12223345556677766655443
No 366
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.30 E-value=1.6e+02 Score=30.62 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=57.9
Q ss_pred CcCEEEEEeCCCC-cHHH-HHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCC-CccCcCCCCccEEEEcCCccch
Q 015523 219 RMPRVLIPIANGS-EEIE-IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADK-SISDAAESVYDLIILPGGVAGA 295 (405)
Q Consensus 219 ~~~~V~il~~~g~-~~~e-~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~-~l~~~~~~~~D~livpgG~~~~ 295 (405)
++++|+|+.-.+- ...+ +..+.+.|.+.++++.+-..... .+.. ...... ...+. .+.|.+++.||
T Consensus 289 ~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~-~~~~----~~~~~~~~~~~~--~~~dlvi~lGG---- 357 (569)
T PRK14076 289 KPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYN-KLKN----RLNEECNLIDDI--EEISHIISIGG---- 357 (569)
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhh-hhcc----cccccccccccc--cCCCEEEEECC----
Confidence 4678999876554 3333 33455667778887766543221 1110 000000 01122 36799999998
Q ss_pred HhhhcChHHHHHHHHHhhcCCEEEEEchHHH-HHH
Q 015523 296 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPI-VLH 329 (405)
Q Consensus 296 ~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~-~La 329 (405)
|..+++..+.+...+.||.+|-.|.. +|+
T Consensus 358 -----DGT~L~aa~~~~~~~~PilGin~G~lGFL~ 387 (569)
T PRK14076 358 -----DGTVLRASKLVNGEEIPIICINMGTVGFLT 387 (569)
T ss_pred -----cHHHHHHHHHhcCCCCCEEEEcCCCCCcCc
Confidence 45788888888888999999998875 443
No 367
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=41.84 E-value=43 Score=30.56 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=30.6
Q ss_pred CCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 76 SHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 76 ~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
++.++|.+++.|| |..+++.++.+...+.||.+|-.|
T Consensus 22 ~~~~~Dlvi~iGG---------DGTlL~a~~~~~~~~~PvlGIN~G 58 (246)
T PRK04761 22 PIEEADVIVALGG---------DGFMLQTLHRYMNSGKPVYGMNRG 58 (246)
T ss_pred CcccCCEEEEECC---------CHHHHHHHHHhcCCCCeEEEEeCC
Confidence 3457899999999 467788888888889999999885
No 368
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=41.80 E-value=18 Score=30.02 Aligned_cols=92 Identities=13% Similarity=0.067 Sum_probs=53.8
Q ss_pred CCcEEEEEecCC---CchhhHHHHHHHHHhcCC---EEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcC--
Q 015523 16 FALNVLVPVGFG---TEEMEAVIIVDVLRRAGA---QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG-- 87 (405)
Q Consensus 16 ~~~ki~ill~~g---~~~~e~~~~~~~l~~~~~---~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipg-- 87 (405)
+..||+|+...- ....-+....+.|.+.++ +++++..-|. .-+++.....++. ..||+++..|
T Consensus 2 ~~~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa------~ElP~a~~~l~~~---~~~Davi~lG~V 72 (144)
T PF00885_consen 2 SGLRIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVPGA------FELPLAAKRLAES---GRYDAVIALGCV 72 (144)
T ss_dssp TTEEEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSG------GGHHHHHHHHHHC---STESEEEEEEEE
T ss_pred CCCEEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCCH------HHHHHHHHHHhcc---cCccEEEEeccc
Confidence 457999998552 223344567788888887 7888875553 1222333333322 3599999887
Q ss_pred --CchhhhccccChHHHHHHHHHHHcCCEEE
Q 015523 88 --GMPGSVRLRDCEILKKITSKQAEEKRLYG 116 (405)
Q Consensus 88 --g~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 116 (405)
|...-..+..+.....+.+-..+.++||.
T Consensus 73 I~G~T~H~~~v~~~v~~gl~~lsl~~~~PV~ 103 (144)
T PF00885_consen 73 IRGETDHFEYVANAVSRGLMDLSLEYGIPVI 103 (144)
T ss_dssp E--SSTHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred cCCCchHHHHHHHHHHHHHHHHhccCCccEE
Confidence 21112223334455556666678888875
No 369
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=40.99 E-value=2.4e+02 Score=25.59 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=52.0
Q ss_pred cCEEEEEeCCCCc--HHHHHHHHHHHHhCC--CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch
Q 015523 220 MPRVLIPIANGSE--EIEIVTIVDILRRAK--VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 295 (405)
Q Consensus 220 ~~~V~il~~~g~~--~~e~~~~~~~l~~~~--~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~ 295 (405)
+.||+.+-.-|.. ...+.-..+.|.... +++.+. +.. .|.. +. ++.|+++|-|+-
T Consensus 3 ~ikva~~~L~gC~GC~~slldl~E~L~dll~~~div~~-~~l-------------~D~k--ei--PEvDValVEGsV--- 61 (247)
T COG1941 3 KIKVATVWLTGCSGCHMSLLDLYEKLLDLLEDADIVYC-PTL-------------VDEK--EI--PEVDVALVEGSV--- 61 (247)
T ss_pred ceEEEEEEeccccchHHHHHhHHHHHHHhhhhhcEEEe-ecc-------------cccc--cC--CcccEEEEeccc---
Confidence 4678888888764 344444555554432 233322 221 1222 33 448999999985
Q ss_pred HhhhcChHHHHHHHHHhhcCCEEEEEchHH
Q 015523 296 ERLQKSRILKKLLKEQKVAGRIYGAVCSSP 325 (405)
Q Consensus 296 ~~~~~~~~l~~~l~~~~~~~k~i~aic~g~ 325 (405)
.+++-++.+++..++.|.++|+++=+
T Consensus 62 ----~~ee~lE~v~ElRekakivVA~GsCA 87 (247)
T COG1941 62 ----CDEEELELVKELREKAKIVVALGSCA 87 (247)
T ss_pred ----CcHHHHHHHHHHHHhCcEEEEEecch
Confidence 37788889999999999999987643
No 370
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.72 E-value=1.9e+02 Score=26.71 Aligned_cols=72 Identities=14% Similarity=0.230 Sum_probs=45.3
Q ss_pred cCEEEEEeCCCCcHHHHHH-HHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523 220 MPRVLIPIANGSEEIEIVT-IVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 298 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~-~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~ 298 (405)
|.+|+++.-+.-...++.. ..+.|.+.|+.+..- . .+.|.+++.||
T Consensus 2 ~~~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~------------------------~--~~~D~vi~lGG------- 48 (264)
T PRK03501 2 RRNLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDH------------------------P--KNANIIVSIGG------- 48 (264)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcC------------------------C--CCccEEEEECC-------
Confidence 4578877665444444433 334566777755421 1 34699999998
Q ss_pred hcChHHHHHHHHHhhc-CCEEEEEch-HHH
Q 015523 299 QKSRILKKLLKEQKVA-GRIYGAVCS-SPI 326 (405)
Q Consensus 299 ~~~~~l~~~l~~~~~~-~k~i~aic~-g~~ 326 (405)
|..+++..+.+... ..+|.+|-. |..
T Consensus 49 --DGT~L~a~~~~~~~~~~pilgIn~~G~l 76 (264)
T PRK03501 49 --DGTFLQAVRKTGFREDCLYAGISTKDQL 76 (264)
T ss_pred --cHHHHHHHHHhcccCCCeEEeEecCCCC
Confidence 44677777776543 678888888 643
No 371
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=40.56 E-value=2e+02 Score=29.32 Aligned_cols=100 Identities=16% Similarity=0.117 Sum_probs=56.5
Q ss_pred CcCEEEEEeCCCC-cHHHHH-HHHHHHH-hCCCeEEEEeecCCceeecC---CCcE-E-eeCCCccCcCCCCccEEEEcC
Q 015523 219 RMPRVLIPIANGS-EEIEIV-TIVDILR-RAKVDVVVASVERSTQIVAS---QGVK-I-IADKSISDAAESVYDLIILPG 290 (405)
Q Consensus 219 ~~~~V~il~~~g~-~~~e~~-~~~~~l~-~~~~~v~~vs~~~~~~v~~~---~g~~-v-~~~~~l~~~~~~~~D~livpg 290 (405)
.+++|+|+.-++- ...++. .+.+.|. ..|+.+.+-..... ..... .+.. . .+...+.++ ..++|++|+.|
T Consensus 193 ~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~-~l~~~~~~~~~~~~~~~~~~~~~l-~~~~DlVIsiG 270 (508)
T PLN02935 193 DPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKK-ELLSESSYFNFVQTWEDEKEILLL-HTKVDLVITLG 270 (508)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhh-hhccccccccccccccccchhhhc-ccCCCEEEEEC
Confidence 3689999987655 333333 3445566 46677666432221 11110 0100 0 000111111 13589999999
Q ss_pred CccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHH-HHH
Q 015523 291 GVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI-VLH 329 (405)
Q Consensus 291 G~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~-~La 329 (405)
| |..++...+.+.....||.+|-.|.. +|+
T Consensus 271 G---------DGTlL~Aar~~~~~~iPILGIN~G~LGFLt 301 (508)
T PLN02935 271 G---------DGTVLWAASMFKGPVPPVVPFSMGSLGFMT 301 (508)
T ss_pred C---------cHHHHHHHHHhccCCCcEEEEeCCCcceec
Confidence 9 45778888888888899999988865 443
No 372
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.45 E-value=1.4e+02 Score=27.58 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=29.3
Q ss_pred CccEEEEcCCccchHhhhcChHHHHHHHHHhh--cCCEEEEEchHHH
Q 015523 282 VYDLIILPGGVAGAERLQKSRILKKLLKEQKV--AGRIYGAVCSSPI 326 (405)
Q Consensus 282 ~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~--~~k~i~aic~g~~ 326 (405)
++|.+++.|| |..+++.++.+.. .+.||.+|-.|-.
T Consensus 35 ~~Dlvi~iGG---------DGT~L~a~~~~~~~~~~iPilGIN~G~l 72 (265)
T PRK04885 35 NPDIVISVGG---------DGTLLSAFHRYENQLDKVRFVGVHTGHL 72 (265)
T ss_pred CCCEEEEECC---------cHHHHHHHHHhcccCCCCeEEEEeCCCc
Confidence 5799999998 4577888887776 6899999988865
No 373
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=40.34 E-value=1.8e+02 Score=27.06 Aligned_cols=86 Identities=17% Similarity=0.076 Sum_probs=51.3
Q ss_pred cEEEEEecCCCch--hhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523 18 LNVLVPVGFGTEE--MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 95 (405)
Q Consensus 18 ~ki~ill~~g~~~--~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~ 95 (405)
++++|+.-++... .........+...++.+........ ..... ..+.+.....+|.+++.||
T Consensus 1 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~l~~~--------~~~~~~~~~~~d~ivvlGG------- 64 (281)
T COG0061 1 KKVGIVGRPDKPEALKIAKRLYEFLKFKGVTVEVDQELAE-ELKDF--------ADYVDDDEEKADLIVVLGG------- 64 (281)
T ss_pred CeEEEEecCCcHHHHHHHHHHHHHHHhcCceEEEechhhh-hcccc--------cccccccccCceEEEEeCC-------
Confidence 3677777665542 2223344444555666665544332 11111 1222233346899999888
Q ss_pred ccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 96 RDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
|.-++...+.+.+.+.+|.++-.|
T Consensus 65 --DGtlL~~~~~~~~~~~pilgin~G 88 (281)
T COG0061 65 --DGTLLRAARLLARLDIPVLGINLG 88 (281)
T ss_pred --cHHHHHHHHHhccCCCCEEEEeCC
Confidence 456788888888888999999885
No 374
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=40.30 E-value=68 Score=23.67 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHhcCCEEEEEe
Q 015523 30 EMEAVIIVDVLRRAGAQVTMAS 51 (405)
Q Consensus 30 ~~e~~~~~~~l~~~~~~v~~vs 51 (405)
+..+..+.+.|++.||+|.-+.
T Consensus 7 E~~Ls~v~~~L~~~GyeVv~l~ 28 (80)
T PF03698_consen 7 EEGLSNVKEALREKGYEVVDLE 28 (80)
T ss_pred cCCchHHHHHHHHCCCEEEecC
Confidence 3567778899999999887665
No 375
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=40.16 E-value=50 Score=28.49 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=31.0
Q ss_pred CCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEch
Q 015523 280 ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCS 323 (405)
Q Consensus 280 ~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~ 323 (405)
+.++|+++|-|... .+..+.++.++++..+-|+|+|+++
T Consensus 71 PR~aDillVeG~VT-----~~m~~~l~~~~e~~p~pk~VIAvGa 109 (180)
T PRK14820 71 PRQADMLMVMGTIA-----KKMAPVLKQVYLQMAEPRWVVAVGA 109 (180)
T ss_pred CccceEEEEEecCC-----cccHHHHHHHHHhcCCCCeEEEEec
Confidence 47899999999742 2347788888888889999999865
No 376
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.53 E-value=75 Score=25.75 Aligned_cols=65 Identities=14% Similarity=0.098 Sum_probs=40.4
Q ss_pred eEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCC
Q 015523 58 VEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGL 131 (405)
Q Consensus 58 v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agl 131 (405)
....+|+++. ..++.+ ..|++++-||...+..=...++..+++.+. .++.+.++|- -. +..++|-
T Consensus 69 ~~~d~G~ql~---e~e~~n--~aDvvVLlGGLaMP~~gv~~d~~kel~ee~--~~kkliGvCf-m~-mF~ragW 133 (154)
T COG4090 69 ELTDHGYQLG---EREELN--SADVVVLLGGLAMPKIGVTPDDAKELLEEL--GNKKLIGVCF-MN-MFERAGW 133 (154)
T ss_pred eeeccceecC---Cccccc--cccEEEEEcccccCcCCCCHHHHHHHHHhc--CCCceEEeeH-HH-HHHHcCc
Confidence 3456776662 233343 589999999953333223445677777743 4568999999 34 4677773
No 377
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=39.26 E-value=2.1e+02 Score=26.92 Aligned_cols=96 Identities=17% Similarity=0.135 Sum_probs=53.4
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEee---------CCCccCc-CCCCccEEEEc
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIA---------DKSISDA-AESVYDLIILP 289 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~---------~~~l~~~-~~~~~D~livp 289 (405)
+|+|+|+ |.-..-.. +...|.++|.++.+++.+.. ......|+++.. -...... ....+|.+|+.
T Consensus 5 ~m~I~Ii---G~GaiG~~-lA~~L~~~g~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vila 79 (313)
T PRK06249 5 TPRIGII---GTGAIGGF-YGAMLARAGFDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVG 79 (313)
T ss_pred CcEEEEE---CCCHHHHH-HHHHHHHCCCeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEE
Confidence 4688887 44343322 33456778999999988653 222233443321 0001111 12578988876
Q ss_pred CCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHH
Q 015523 290 GGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 326 (405)
Q Consensus 290 gG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~ 326 (405)
--. .....+.+.+......+..|..+.+|.-
T Consensus 80 vK~------~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 80 LKT------TANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred ecC------CChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 421 1234566677666666677777877754
No 378
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=38.84 E-value=2e+02 Score=24.41 Aligned_cols=103 Identities=12% Similarity=0.086 Sum_probs=54.6
Q ss_pred EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHH
Q 015523 22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL 101 (405)
Q Consensus 22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~ 101 (405)
|++.|+++...........-+.++.+.+.--+. ++++ ++...+++-|+|.-| ++... +..--
T Consensus 21 iv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDe-----------iTV~----El~~~NP~~LliSPG-PG~P~--DsGIs 82 (223)
T KOG0026|consen 21 IIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDE-----------LTVE----ELKRKNPRGLLISPG-PGTPQ--DSGIS 82 (223)
T ss_pred EEEEecccchhHHHHHHhhhccCccEEEEecCc-----------ccHH----HHhhcCCCeEEecCC-CCCCc--cccch
Confidence 555666665554433333345577777765443 1111 222234676766544 22221 33444
Q ss_pred HHHHHHHHHcCCEEEEEccchHHhhhh-------c--CCCCCcceeeccCc
Q 015523 102 KKITSKQAEEKRLYGAICAAPAVTLLP-------W--GLLRRKQITCHPAF 143 (405)
Q Consensus 102 ~~~l~~~~~~~~~i~aic~g~~~~La~-------a--gll~g~~~t~~~~~ 143 (405)
++.+++ +....|+.++|.|-..+... + ++..|+..-.|...
T Consensus 83 ~~~i~~-f~~~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~ 132 (223)
T KOG0026|consen 83 LQTVLE-LGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDE 132 (223)
T ss_pred HHHHHH-hCCCCceeeeehhhhhhhhhhCcEEeccCcceeeccccccccCC
Confidence 555554 45667999999975533222 2 36677776666554
No 379
>PRK11914 diacylglycerol kinase; Reviewed
Probab=38.31 E-value=64 Score=30.36 Aligned_cols=89 Identities=16% Similarity=0.108 Sum_probs=51.3
Q ss_pred CcCEEEEEeCCCC----cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccc
Q 015523 219 RMPRVLIPIANGS----EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG 294 (405)
Q Consensus 219 ~~~~V~il~~~g~----~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~ 294 (405)
.|+|+.+|+-+.. .........+.|.+.++++.++..+.. . .......+.....+|.|++.||-
T Consensus 7 ~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~-~---------~~~~~a~~~~~~~~d~vvv~GGD-- 74 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDA-H---------DARHLVAAALAKGTDALVVVGGD-- 74 (306)
T ss_pred CCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCH-H---------HHHHHHHHHHhcCCCEEEEECCc--
Confidence 4578888876532 233344567788899988876655442 0 01111111222567999999984
Q ss_pred hHhhhcChHHHHHHHHHhhcCCEEEEEchHHH
Q 015523 295 AERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 326 (405)
Q Consensus 295 ~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~ 326 (405)
..+.+.++.....+.+++-+=.|+.
T Consensus 75 -------GTi~evv~~l~~~~~~lgiiP~GT~ 99 (306)
T PRK11914 75 -------GVISNALQVLAGTDIPLGIIPAGTG 99 (306)
T ss_pred -------hHHHHHhHHhccCCCcEEEEeCCCc
Confidence 2444445555555666776666655
No 380
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.03 E-value=2.3e+02 Score=26.02 Aligned_cols=71 Identities=18% Similarity=0.150 Sum_probs=45.9
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcccc
Q 015523 18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD 97 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~ 97 (405)
||++|+--+. .......+.+.|.+.++.+.... + . . . ...+.|++++.||
T Consensus 1 m~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~-~-~-~---------------~--~~~~~d~vi~iGG--------- 50 (256)
T PRK14075 1 MKLGIFYREE-KEKEAKFLKEKISKEHEVVEFCE-A-S-A---------------S--GKVTADLIIVVGG--------- 50 (256)
T ss_pred CEEEEEeCcc-HHHHHHHHHHHHHHcCCeeEeec-c-c-c---------------c--ccCCCCEEEEECC---------
Confidence 5788884444 56666777788888877655331 1 1 0 0 0125799999999
Q ss_pred ChHHHHHHHHHHHcCCEEEEEccc
Q 015523 98 CEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 98 ~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
|..+++.++.+ +.||.++-.|
T Consensus 51 DGT~L~a~~~~---~~Pilgin~G 71 (256)
T PRK14075 51 DGTVLKAAKKV---GTPLVGFKAG 71 (256)
T ss_pred cHHHHHHHHHc---CCCEEEEeCC
Confidence 34455556654 8999988874
No 381
>PLN02727 NAD kinase
Probab=37.79 E-value=1.8e+02 Score=32.00 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=58.2
Q ss_pred CcCEEEEEeCCCCcHHHH-HHHHHHHHhC-CCeEEEEeecCCceeecCCCcE---EeeCCCccCcCCCCccEEEEcCCcc
Q 015523 219 RMPRVLIPIANGSEEIEI-VTIVDILRRA-KVDVVVASVERSTQIVASQGVK---IIADKSISDAAESVYDLIILPGGVA 293 (405)
Q Consensus 219 ~~~~V~il~~~g~~~~e~-~~~~~~l~~~-~~~v~~vs~~~~~~v~~~~g~~---v~~~~~l~~~~~~~~D~livpgG~~ 293 (405)
.+++|+|+.-.+-...+. ..+.+.|... |+++.+-..... ......++. ..-....+++ ....|++|+.||
T Consensus 677 p~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~-~l~~~~~~~~~~~~~~~~~~el-~~~~DLVIvLGG-- 752 (986)
T PLN02727 677 TPKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHD-IFARIPGFGFVQTFYSQDTSDL-HERVDFVACLGG-- 752 (986)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHH-Hhhccccccccceecccchhhc-ccCCCEEEEECC--
Confidence 368999998776533332 3356666665 666544322211 110111110 0001111222 136899999999
Q ss_pred chHhhhcChHHHHHHHHHhhcCCEEEEEchHHH-HHH
Q 015523 294 GAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI-VLH 329 (405)
Q Consensus 294 ~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~-~La 329 (405)
|..+++..+.+...+.||.+|-.|.. +|+
T Consensus 753 -------DGTlLrAar~~~~~~iPILGINlGrLGFLT 782 (986)
T PLN02727 753 -------DGVILHASNLFRGAVPPVVSFNLGSLGFLT 782 (986)
T ss_pred -------cHHHHHHHHHhcCCCCCEEEEeCCCccccc
Confidence 45788888888888899999998876 444
No 382
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=37.59 E-value=1.6e+02 Score=27.75 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=79.6
Q ss_pred ChHHHHHHHHhcccccccCcccccccccccc--c---cCCcCEEEEEeC-----CCCcHHHHHHHHHHHHhCCC-eEEEE
Q 015523 185 GESVAKEIGELLLMHNADNSLKKEEFNEVEW--F---FDRMPRVLIPIA-----NGSEEIEIVTIVDILRRAKV-DVVVA 253 (405)
Q Consensus 185 g~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~--~---~~~~~~V~il~~-----~g~~~~e~~~~~~~l~~~~~-~v~~v 253 (405)
.+++|+++++.|.++..+- ....|...+. + .-+.+.|.|+.. .+-...|+..+.+.++++|. ++.++
T Consensus 9 ~~~la~~ia~~lg~~~~~~--~~~~FpdGE~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~ga~~i~~v 86 (308)
T TIGR01251 9 NQELAQKVAKNLGLPLGDV--EVKRFPDGELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKRASAKSITAV 86 (308)
T ss_pred CHHHHHHHHHHhCCeeeee--EEEECCCCCEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 3567777777776654443 2333333221 1 112357777721 24467899999999999996 57777
Q ss_pred eecCCceeec----CCCcEEeeCCCccCcCCCCccEEEEcCCcc---------chHhhhcChHHHHHHHHHhhcCCEEEE
Q 015523 254 SVERSTQIVA----SQGVKIIADKSISDAAESVYDLIILPGGVA---------GAERLQKSRILKKLLKEQKVAGRIYGA 320 (405)
Q Consensus 254 s~~~~~~v~~----~~g~~v~~~~~l~~~~~~~~D~livpgG~~---------~~~~~~~~~~l~~~l~~~~~~~k~i~a 320 (405)
-|.-+ ..+. ..|-.+.......-+....+|-++.-.-|. ....+...+.+.+|+++...+.-.|++
T Consensus 87 ~PYl~-Y~RqDr~~~~ge~is~~~~a~ll~~~g~d~vit~DlHs~~~~~~f~ip~~~l~a~~~l~~~i~~~~~~~~viv~ 165 (308)
T TIGR01251 87 IPYYG-YARQDKKFKSREPISAKLVANLLETAGADRVLTVDLHSPQIQGFFDVPVDNLYASPVLAEYLKKKILDNPVVVS 165 (308)
T ss_pred EEecc-cchhccccCCCCCchHHHHHHHHHHcCCCEEEEecCChHHhcCcCCCceecccCHHHHHHHHHhhCCCCCEEEE
Confidence 77642 1111 112111111111111123467776655332 112234456788899876445678999
Q ss_pred EchHHHHHHH
Q 015523 321 VCSSPIVLHK 330 (405)
Q Consensus 321 ic~g~~~La~ 330 (405)
+-.|...++.
T Consensus 166 pd~g~~~~A~ 175 (308)
T TIGR01251 166 PDAGGVERAK 175 (308)
T ss_pred ECCchHHHHH
Confidence 9999986653
No 383
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=37.53 E-value=38 Score=31.77 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=53.9
Q ss_pred CcCEEEEEeCCC-CcHHHHHHHHHHHHhCC--CeEEEEeecCCceeecCCCcEEee-CCCccCcCCCCccEEEEcCCccc
Q 015523 219 RMPRVLIPIANG-SEEIEIVTIVDILRRAK--VDVVVASVERSTQIVASQGVKIIA-DKSISDAAESVYDLIILPGGVAG 294 (405)
Q Consensus 219 ~~~~V~il~~~g-~~~~e~~~~~~~l~~~~--~~v~~vs~~~~~~v~~~~g~~v~~-~~~l~~~~~~~~D~livpgG~~~ 294 (405)
++.||+||-.-. -...| ..+...|.... ++++++.+..- ..+....-.+.. =.+++++....||++||.|....
T Consensus 33 rpL~I~IlNLMP~K~~TE-~Q~lrlL~~tplqv~v~f~~~~sh-~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAPvE 110 (298)
T PF04204_consen 33 RPLKIGILNLMPDKEETE-RQFLRLLSNTPLQVEVTFLYPASH-KSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAPVE 110 (298)
T ss_dssp --EEEEEE---SSHHHHH-HHHHHHCCSSSS-EEEEEE--S------SS-HHHHHHHEE-HHHCTTS-EEEEEE---TTT
T ss_pred cceEEEEEecccchHHHH-HHHHHHhcCCCCceEEEEEEeccc-cCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCCcC
Confidence 568899986533 24444 44556665555 45555555432 111111111111 12566666689999999997532
Q ss_pred hHhhh---cChHHHHHHHHHhhcCCEEEEEchHHHH
Q 015523 295 AERLQ---KSRILKKLLKEQKVAGRIYGAVCSSPIV 327 (405)
Q Consensus 295 ~~~~~---~~~~l~~~l~~~~~~~k~i~aic~g~~~ 327 (405)
.-.+. -=+++.+.+.....+......+|=|+..
T Consensus 111 ~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqA 146 (298)
T PF04204_consen 111 QLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQA 146 (298)
T ss_dssp TS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHH
Confidence 22221 1246777777777888899999999986
No 384
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=37.46 E-value=2.3e+02 Score=26.33 Aligned_cols=87 Identities=17% Similarity=0.087 Sum_probs=50.9
Q ss_pred EEEEEeCCCCcH--HHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523 222 RVLIPIANGSEE--IEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 299 (405)
Q Consensus 222 ~V~il~~~g~~~--~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~ 299 (405)
+|+++.-+.... .........+...++.+.+...... ..... ..+.+.+...+|++++.||
T Consensus 2 ~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~l~~~--------~~~~~~~~~~~d~ivvlGG-------- 64 (281)
T COG0061 2 KVGIVGRPDKPEALKIAKRLYEFLKFKGVTVEVDQELAE-ELKDF--------ADYVDDDEEKADLIVVLGG-------- 64 (281)
T ss_pred eEEEEecCCcHHHHHHHHHHHHHHHhcCceEEEechhhh-hcccc--------cccccccccCceEEEEeCC--------
Confidence 455555444422 2223344444445565555544332 22111 2223333367899999887
Q ss_pred cChHHHHHHHHHhhcCCEEEEEchHHH
Q 015523 300 KSRILKKLLKEQKVAGRIYGAVCSSPI 326 (405)
Q Consensus 300 ~~~~l~~~l~~~~~~~k~i~aic~g~~ 326 (405)
+..+++..+.+.+.+.+|.++-.|..
T Consensus 65 -DGtlL~~~~~~~~~~~pilgin~G~l 90 (281)
T COG0061 65 -DGTLLRAARLLARLDIPVLGINLGHL 90 (281)
T ss_pred -cHHHHHHHHHhccCCCCEEEEeCCCc
Confidence 45788888988888899999999944
No 385
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=37.45 E-value=2e+02 Score=22.60 Aligned_cols=79 Identities=15% Similarity=0.100 Sum_probs=41.3
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcccc
Q 015523 18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD 97 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~ 97 (405)
|+|+|+-...-...=-..++..|.+.|+++..+.++.+ .+. |.+..+ ++.+. +...|.+++.-.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~-~i~---G~~~y~--sl~e~-p~~iDlavv~~~--------- 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGG-EIL---GIKCYP--SLAEI-PEPIDLAVVCVP--------- 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCS-EET---TEE-BS--SGGGC-SST-SEEEE-S----------
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCce-EEC---cEEeec--cccCC-CCCCCEEEEEcC---------
Confidence 45677754432222234466777778999999999886 443 444443 34443 357888887543
Q ss_pred ChHHHHHHHHHHHcC
Q 015523 98 CEILKKITSKQAEEK 112 (405)
Q Consensus 98 ~~~~~~~l~~~~~~~ 112 (405)
.+...+++++..+.+
T Consensus 65 ~~~~~~~v~~~~~~g 79 (116)
T PF13380_consen 65 PDKVPEIVDEAAALG 79 (116)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC
Confidence 124445555555444
No 386
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=37.24 E-value=65 Score=28.21 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=55.2
Q ss_pred cCEEEEEeCCC-CcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523 220 MPRVLIPIANG-SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 298 (405)
Q Consensus 220 ~~~V~il~~~g-~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~ 298 (405)
..+|.+.+.+| .++.....+...|+..||++...+.+- .++.-.+.+....+|+|.+-... ....
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~v------------p~e~~v~~~~~~~pd~v~lS~~~--~~~~ 149 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDV------------PIDTVVEKVKKEKPLMLTGSALM--TTTM 149 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCC------------CHHHHHHHHHHcCCCEEEEcccc--ccCH
Confidence 35777777774 799999999999999999999887654 22222233334678988886643 2222
Q ss_pred hcChHHHHHHHHHhhcCCEEEEEchHH
Q 015523 299 QKSRILKKLLKEQKVAGRIYGAVCSSP 325 (405)
Q Consensus 299 ~~~~~l~~~l~~~~~~~k~i~aic~g~ 325 (405)
..-+++++.|++.....++...+|..+
T Consensus 150 ~~~~~~i~~l~~~~~~~~v~i~vGG~~ 176 (197)
T TIGR02370 150 YGQKDINDKLKEEGYRDSVKFMVGGAP 176 (197)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEChh
Confidence 223344444444322233444444433
No 387
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=37.13 E-value=1.2e+02 Score=24.30 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHh---h
Q 015523 237 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQK---V 313 (405)
Q Consensus 237 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~---~ 313 (405)
-.+.+.+...+++++++..+.- ...++ .++|.|++..........+ .+.+..|++... -
T Consensus 17 ~~i~~~~~~~g~~v~~~~~~~~---------------~~~~l--~~~d~iilgspty~~g~~p-~~~~~~f~~~l~~~~~ 78 (140)
T TIGR01753 17 NIIAEGLKEAGAEVDLLEVADA---------------DAEDL--LSYDAVLLGCSTWGDEDLE-QDDFEPFFEELEDIDL 78 (140)
T ss_pred HHHHHHHHhcCCeEEEEEcccC---------------CHHHH--hcCCEEEEEcCCCCCCCCC-cchHHHHHHHhhhCCC
Confidence 4455677777888887765432 11233 5689888865432111111 134455554433 4
Q ss_pred cCCEEEEEchHH
Q 015523 314 AGRIYGAVCSSP 325 (405)
Q Consensus 314 ~~k~i~aic~g~ 325 (405)
+||.++.+++|-
T Consensus 79 ~gk~~~vfgt~g 90 (140)
T TIGR01753 79 GGKKVALFGSGD 90 (140)
T ss_pred CCCEEEEEecCC
Confidence 678888887653
No 388
>PLN02929 NADH kinase
Probab=36.80 E-value=1.5e+02 Score=27.97 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHH
Q 015523 31 MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAE 110 (405)
Q Consensus 31 ~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~ 110 (405)
.-+..+.+.|++.|+++..+.... . . ....+.|++|+.|| |..++...+.. .
T Consensus 34 ~~~~~~~~~L~~~gi~~~~v~r~~---~--------------~-~~~~~~Dlvi~lGG---------DGT~L~aa~~~-~ 85 (301)
T PLN02929 34 DTVNFCKDILQQKSVDWECVLRNE---L--------------S-QPIRDVDLVVAVGG---------DGTLLQASHFL-D 85 (301)
T ss_pred HHHHHHHHHHHHcCCEEEEeeccc---c--------------c-cccCCCCEEEEECC---------cHHHHHHHHHc-C
Confidence 445567788888898886554211 0 0 11136899999999 35566666666 7
Q ss_pred cCCEEEEEccch
Q 015523 111 EKRLYGAICAAP 122 (405)
Q Consensus 111 ~~~~i~aic~g~ 122 (405)
.+.||.+|-.|+
T Consensus 86 ~~iPvlGIN~Gp 97 (301)
T PLN02929 86 DSIPVLGVNSDP 97 (301)
T ss_pred CCCcEEEEECCC
Confidence 789999998864
No 389
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=35.88 E-value=1e+02 Score=33.47 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=63.5
Q ss_pred CcEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc-
Q 015523 17 ALNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR- 94 (405)
Q Consensus 17 ~~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~- 94 (405)
..||+||--+|.+ +.|+ ...|.++||+..=|+-+.- +. .....++|-.++.+||+.-.+.
T Consensus 1058 ~PkVAilREeGvNg~rEM---a~af~~AgF~~~DVtmtDl----------L~-----G~~~ld~frGlaf~GGFSYaDvL 1119 (1320)
T KOG1907|consen 1058 APKVAILREEGVNGDREM---AAAFYAAGFETVDVTMTDL----------LA-----GRHHLDDFRGLAFCGGFSYADVL 1119 (1320)
T ss_pred CCceEEeeccccccHHHH---HHHHHHcCCceeeeeeehh----------hc-----CceeHhHhcceeeecCcchHhhh
Confidence 4499999999988 4555 4557778987665554431 01 1122236888999998632222
Q ss_pred ---------cccChHHHHHHHHHHHc-CCEEEEEccchHHhhhhcCCCC
Q 015523 95 ---------LRDCEILKKITSKQAEE-KRLYGAICAAPAVTLLPWGLLR 133 (405)
Q Consensus 95 ---------~~~~~~~~~~l~~~~~~-~~~i~aic~g~~~~La~agll~ 133 (405)
..-++.++.-..+|+++ ...=.+||+|.. ++++.|-+-
T Consensus 1120 gSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQ-lms~Lg~i~ 1167 (1320)
T KOG1907|consen 1120 GSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQ-LMSRLGWIG 1167 (1320)
T ss_pred ccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhH-HHHHhcccC
Confidence 23466677666666654 455678999877 699998663
No 390
>PRK13054 lipid kinase; Reviewed
Probab=35.25 E-value=1.4e+02 Score=28.03 Aligned_cols=95 Identities=15% Similarity=0.180 Sum_probs=50.7
Q ss_pred CcCEEEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecC-CceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523 219 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVER-STQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 296 (405)
Q Consensus 219 ~~~~V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~-~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~ 296 (405)
+|+++.+++-+.. ....+......|.+.++++++..... + .. .....+.....+|.|++.||-
T Consensus 2 ~~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~-~a----------~~~a~~~~~~~~d~vvv~GGD---- 66 (300)
T PRK13054 2 TFPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKG-DA----------ARYVEEALALGVATVIAGGGD---- 66 (300)
T ss_pred CCceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCC-cH----------HHHHHHHHHcCCCEEEEECCc----
Confidence 3567776655433 33455566777888998877644332 2 10 001111112458999999984
Q ss_pred hhhcChHHHHHHHHHhhc--C--CEEEEEchHHH-HHH-HcCC
Q 015523 297 RLQKSRILKKLLKEQKVA--G--RIYGAVCSSPI-VLH-KHGL 333 (405)
Q Consensus 297 ~~~~~~~l~~~l~~~~~~--~--k~i~aic~g~~-~La-~aGl 333 (405)
..+.+.++..... + -+++-+=.|+. -+| ..|+
T Consensus 67 -----GTl~evv~~l~~~~~~~~~~lgiiP~GTgNdfar~lgi 104 (300)
T PRK13054 67 -----GTINEVATALAQLEGDARPALGILPLGTANDFATAAGI 104 (300)
T ss_pred -----cHHHHHHHHHHhhccCCCCcEEEEeCCcHhHHHHhcCC
Confidence 3444555554432 2 35666665555 333 3354
No 391
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.50 E-value=63 Score=22.08 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=23.7
Q ss_pred EEecCCCchhhHHHHHHHHHhcCCEEEE
Q 015523 22 VPVGFGTEEMEAVIIVDVLRRAGAQVTM 49 (405)
Q Consensus 22 ill~~g~~~~e~~~~~~~l~~~~~~v~~ 49 (405)
++++.||+..++..+++.+++.|..+.+
T Consensus 3 ~ll~~g~~~~el~~~l~~~r~~~~~~~~ 30 (58)
T PF12646_consen 3 FLLFSGFSGEELDKFLDALRKAGIPIPL 30 (58)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCCcce
Confidence 5789999999999999999999764443
No 392
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=34.04 E-value=87 Score=26.43 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=32.1
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecC
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVE 53 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~ 53 (405)
.+|+.|++.||.+..++..+...|+..|..+-.++..
T Consensus 106 ~~kv~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~ 142 (165)
T cd01481 106 VPQFLVLITGGKSQDDVERPAVALKRAGIVPFAIGAR 142 (165)
T ss_pred CCeEEEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC
Confidence 3589999999999888999999999999888777764
No 393
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.17 E-value=60 Score=29.91 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=30.8
Q ss_pred CCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHH
Q 015523 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 326 (405)
Q Consensus 281 ~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~ 326 (405)
.++|++++.|| |..+++.++.+...+.||.+|-.|..
T Consensus 32 ~~~D~vi~iGG---------DGT~L~a~~~~~~~~iPilGIN~G~l 68 (259)
T PRK00561 32 DGADYLFVLGG---------DGFFVSTAANYNCAGCKVVGINTGHL 68 (259)
T ss_pred CCCCEEEEECC---------cHHHHHHHHHhcCCCCcEEEEecCCC
Confidence 45899999998 45788888888888999999998854
No 394
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=33.04 E-value=72 Score=27.67 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=28.7
Q ss_pred CCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEch
Q 015523 280 ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCS 323 (405)
Q Consensus 280 ~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~ 323 (405)
+.++|+++|-|... . +..+.++.+.++..+-|+|+|+++
T Consensus 71 PR~ADvllVtG~VT--~---~m~~~l~~~yeqmp~pk~VIAvGs 109 (186)
T PRK14814 71 PRQADMILVLGTIT--Y---KMAPVLRQIYDQMAEPKFVISVGA 109 (186)
T ss_pred cccceEEEEeccCc--h---hhHHHHHHHHHhcCCCCeEEEecc
Confidence 47899999999742 1 345666666667788999998865
No 395
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=33.00 E-value=1.8e+02 Score=26.44 Aligned_cols=102 Identities=10% Similarity=0.071 Sum_probs=59.8
Q ss_pred CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCc-EEeeCCCc---cCcCCCCccEEEEcCCccc
Q 015523 219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGV-KIIADKSI---SDAAESVYDLIILPGGVAG 294 (405)
Q Consensus 219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~-~v~~~~~l---~~~~~~~~D~livpgG~~~ 294 (405)
..+||+++.+ +.+.=-....+.|...||+|.-...-+- .....+ ++.|+... .+.+.++.|+|++.+.-
T Consensus 119 g~~RIalvTP--Y~~~v~~~~~~~l~~~G~eV~~~~~~~~---~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTn-- 191 (239)
T TIGR02990 119 GVRRISLLTP--YTPETSRPMAQYFAVRGFEIVNFTCLGL---TDDREMARISPDCIVEAALAAFDPDADALFLSCTA-- 191 (239)
T ss_pred CCCEEEEECC--CcHHHHHHHHHHHHhCCcEEeeeeccCC---CCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCC--
Confidence 3478888865 3333335678889999998876633221 111111 23333211 11234789999999752
Q ss_pred hHhhhcChHHHHHHHHHhhcCCEEEEEchHHH--HHHHcCC
Q 015523 295 AERLQKSRILKKLLKEQKVAGRIYGAVCSSPI--VLHKHGL 333 (405)
Q Consensus 295 ~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~--~La~aGl 333 (405)
. ..-++++-|+ .+-||||.+.-.... .|-.+|+
T Consensus 192 L----rt~~vi~~lE--~~lGkPVlsSNqat~W~~Lr~~G~ 226 (239)
T TIGR02990 192 L----RAATCAQRIE--QAIGKPVVTSNQATAWRCLRLCGD 226 (239)
T ss_pred c----hhHHHHHHHH--HHHCCCEEEHHHHHHHHHHHHcCC
Confidence 1 2334555555 346899998887776 6666674
No 396
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=32.61 E-value=1.9e+02 Score=24.57 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=50.4
Q ss_pred CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523 219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 298 (405)
Q Consensus 219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~ 298 (405)
+.++|.++-.- .+..-...+...|...|..+..+... ..... .+-|++|+.+..+
T Consensus 29 ~a~~I~i~G~G-~S~~~A~~~~~~l~~~g~~~~~~~~~-----------------~~~~~--~~~Dv~I~iS~sG----- 83 (179)
T TIGR03127 29 KAKRIFVAGAG-RSGLVGKAFAMRLMHLGFNVYVVGET-----------------TTPSI--KKGDLLIAISGSG----- 83 (179)
T ss_pred hCCEEEEEecC-HHHHHHHHHHHHHHhCCCeEEEeCCc-----------------ccCCC--CCCCEEEEEeCCC-----
Confidence 34566665443 43333344555566667666654221 01222 4568888877532
Q ss_pred hcChHHHHHHHHHhhcCCEEEEEchH
Q 015523 299 QKSRILKKLLKEQKVAGRIYGAVCSS 324 (405)
Q Consensus 299 ~~~~~l~~~l~~~~~~~k~i~aic~g 324 (405)
+.+.+++.++.+.++|.++++|+.-
T Consensus 84 -~t~~~i~~~~~ak~~g~~ii~IT~~ 108 (179)
T TIGR03127 84 -ETESLVTVAKKAKEIGATVAAITTN 108 (179)
T ss_pred -CcHHHHHHHHHHHHCCCeEEEEECC
Confidence 5779999999999999999999873
No 397
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=32.24 E-value=45 Score=30.31 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=41.2
Q ss_pred CCccEEEEcCCccch-HhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523 281 SVYDLIILPGGVAGA-ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK 330 (405)
Q Consensus 281 ~~~D~livpgG~~~~-~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~ 330 (405)
...+.+++.||-... ....+|.++.+.|++-++.|..|++..+|+.++..
T Consensus 105 ~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r~G~avgGTSAGAavM~~ 155 (293)
T COG4242 105 ENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVRRGIAVGGTSAGAAVMSD 155 (293)
T ss_pred HhCceEEEecCcceeeeeeccCCHHHHHHHHHHhcCceecccccchhhcCC
Confidence 568999999995321 23467999999999999999999999999998753
No 398
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=31.98 E-value=64 Score=29.10 Aligned_cols=34 Identities=9% Similarity=-0.020 Sum_probs=22.7
Q ss_pred EEEEEeC---CCCcHHHHHHHHHHHHhCCCeEEEEee
Q 015523 222 RVLIPIA---NGSEEIEIVTIVDILRRAKVDVVVASV 255 (405)
Q Consensus 222 ~V~il~~---~g~~~~e~~~~~~~l~~~~~~v~~vs~ 255 (405)
+|++++. +.|...-+.++.+.+++.|+.+.+...
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~ 37 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYDA 37 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 4677775 234444456777788888998887654
No 399
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.80 E-value=3.1e+02 Score=25.16 Aligned_cols=73 Identities=22% Similarity=0.180 Sum_probs=45.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 300 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~ 300 (405)
|+++|+--+. .......+.+.|.+.|+.+.+. ... . +. ..+.|++++.||-
T Consensus 1 m~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~--~~~-~---------------~~--~~~~d~vi~iGGD-------- 51 (256)
T PRK14075 1 MKLGIFYREE-KEKEAKFLKEKISKEHEVVEFC--EAS-A---------------SG--KVTADLIIVVGGD-------- 51 (256)
T ss_pred CEEEEEeCcc-HHHHHHHHHHHHHHcCCeeEee--ccc-c---------------cc--cCCCCEEEEECCc--------
Confidence 4667773333 5555666777787777655432 111 0 11 1467999999983
Q ss_pred ChHHHHHHHHHhhcCCEEEEEchHHH
Q 015523 301 SRILKKLLKEQKVAGRIYGAVCSSPI 326 (405)
Q Consensus 301 ~~~l~~~l~~~~~~~k~i~aic~g~~ 326 (405)
..+++.++.+ +.||.+|-.|..
T Consensus 52 -GT~L~a~~~~---~~Pilgin~G~l 73 (256)
T PRK14075 52 -GTVLKAAKKV---GTPLVGFKAGRL 73 (256)
T ss_pred -HHHHHHHHHc---CCCEEEEeCCCC
Confidence 3556666655 888999887763
No 400
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=31.71 E-value=61 Score=28.46 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=32.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCC
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERS 258 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~ 258 (405)
|||.|--=||+...-+..+.+.|++.|.+|.+++|..+
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~L~~~g~~V~VvAP~~~ 38 (196)
T PF01975_consen 1 MRILLTNDDGIDAPGIRALAKALSALGHDVVVVAPDSE 38 (196)
T ss_dssp SEEEEE-SS-TTSHHHHHHHHHHTTTSSEEEEEEESSS
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 68888888999999999999999888899999999986
No 401
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=31.64 E-value=83 Score=27.20 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=28.9
Q ss_pred CCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEch
Q 015523 280 ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCS 323 (405)
Q Consensus 280 ~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~ 323 (405)
+.++|+++|-|... .+..+.++.+.++..+-|+|+++++
T Consensus 71 PR~ADillVtG~VT-----~~m~~~l~r~ye~~p~pK~VIAvGs 109 (183)
T PRK14815 71 PRQADVMIVAGTVT-----YKMALAVRRIYDQMPEPKWVIAMGA 109 (183)
T ss_pred CccccEEEEeCcCc-----hhhHHHHHHHHHhCCCCCEEEEecc
Confidence 46799999999741 1334666666778899999999854
No 402
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=31.39 E-value=81 Score=26.17 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=55.7
Q ss_pred cCEEEEEeCCCC---cHHHHHHHHHHHHhCCC---eEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcC---
Q 015523 220 MPRVLIPIANGS---EEIEIVTIVDILRRAKV---DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG--- 290 (405)
Q Consensus 220 ~~~V~il~~~g~---~~~e~~~~~~~l~~~~~---~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpg--- 290 (405)
..||+|+...-. ...=+....+.|...|. +++++..-|- .-+.+.....++. .+||+++..|
T Consensus 3 ~~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa------~ElP~a~~~l~~~---~~~Davi~lG~VI 73 (144)
T PF00885_consen 3 GLRIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVPGA------FELPLAAKRLAES---GRYDAVIALGCVI 73 (144)
T ss_dssp TEEEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSG------GGHHHHHHHHHHC---STESEEEEEEEEE
T ss_pred CCEEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCCH------HHHHHHHHHHhcc---cCccEEEEecccc
Confidence 479999987632 33334568888888887 7888866652 1112222222222 5799998777
Q ss_pred -CccchHhhhcChHHHHHHHHHhhcCCEEEE
Q 015523 291 -GVAGAERLQKSRILKKLLKEQKVAGRIYGA 320 (405)
Q Consensus 291 -G~~~~~~~~~~~~l~~~l~~~~~~~k~i~a 320 (405)
|......+..+.....+++-..+.++||+.
T Consensus 74 ~G~T~H~~~v~~~v~~gl~~lsl~~~~PV~~ 104 (144)
T PF00885_consen 74 RGETDHFEYVANAVSRGLMDLSLEYGIPVIF 104 (144)
T ss_dssp --SSTHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCchHHHHHHHHHHHHHHHHhccCCccEEE
Confidence 322334444555666666656788888764
No 403
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=31.34 E-value=89 Score=28.69 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=50.0
Q ss_pred CCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCch-hhhc-----------
Q 015523 27 GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP-GSVR----------- 94 (405)
Q Consensus 27 g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~-~~~~----------- 94 (405)
.....-..-+.+.|...|+++.-+..-++.+-. +. ..+.... ..+|.||+.||.. ..++
T Consensus 17 ~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~------I~--~~l~~a~-~r~D~vI~tGGLGPT~DDiT~e~vAka~g 87 (255)
T COG1058 17 RIVDTNAAFLADELTELGVDLARITTVGDNPDR------IV--EALREAS-ERADVVITTGGLGPTHDDLTAEAVAKALG 87 (255)
T ss_pred ceecchHHHHHHHHHhcCceEEEEEecCCCHHH------HH--HHHHHHH-hCCCEEEECCCcCCCccHhHHHHHHHHhC
Confidence 456778888999999999988877765541100 00 0111122 2389999999852 2222
Q ss_pred --cccChHHHHHHHHHHHcCC
Q 015523 95 --LRDCEILKKITSKQAEEKR 113 (405)
Q Consensus 95 --~~~~~~~~~~l~~~~~~~~ 113 (405)
+..+++.+++|.+++.+.+
T Consensus 88 ~~lv~~~~al~~i~~~~~~r~ 108 (255)
T COG1058 88 RPLVLDEEALAMIEEKYAKRG 108 (255)
T ss_pred CCcccCHHHHHHHHHHHHhcC
Confidence 2346888888888887665
No 404
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=31.28 E-value=63 Score=30.12 Aligned_cols=93 Identities=13% Similarity=0.029 Sum_probs=0.0
Q ss_pred EEEEEecCC--CchhhHHHHHHHHHhc-CCEEEEEecCCCceeEeccCcEEecCcccCCCCC-------------CcccE
Q 015523 19 NVLVPVGFG--TEEMEAVIIVDVLRRA-GAQVTMASVEPQLEVEASSGTRLVADTSISNCSH-------------QVFDL 82 (405)
Q Consensus 19 ki~ill~~g--~~~~e~~~~~~~l~~~-~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~-------------~~~d~ 82 (405)
||+|+.-++ -...-+..+.++|.+. ++.+..-..-.. .+....+.....+........ .++|+
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 79 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLEKQGIEVLVEGSIAE-DILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEGVDL 79 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHHTTTEEEEEEHHHHH-SHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCCSSE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEChHHHH-HHHHhccccccccccccccccccccchhhhhhcccCCCE
Q ss_pred EEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 83 IALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 83 liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
+++.|| |..+++..+.+.....||.++-.|
T Consensus 80 ii~lGG---------DGT~L~~~~~~~~~~~Pilgin~G 109 (285)
T PF01513_consen 80 IIVLGG---------DGTFLRAARLFGDYDIPILGINTG 109 (285)
T ss_dssp EEEEES---------HHHHHHHHHHCTTST-EEEEEESS
T ss_pred EEEECC---------CHHHHHHHHHhccCCCcEEeecCC
No 405
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=31.27 E-value=1.4e+02 Score=24.51 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=49.7
Q ss_pred cCEEEEEeCC-CCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523 220 MPRVLIPIAN-GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 298 (405)
Q Consensus 220 ~~~V~il~~~-g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~ 298 (405)
.++|.+.... ..++.....+...|+..||++.+...+- .++.-.+.+...+.|+|.+-.-. ....
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~v------------p~e~i~~~a~~~~~d~V~lS~~~--~~~~ 68 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMT------------SQEEFIDAAIETDADAILVSSLY--GHGE 68 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCC------------CHHHHHHHHHHcCCCEEEEcCcc--ccCH
Confidence 4677666666 4688899999999999999999886654 23333333334678888886532 1222
Q ss_pred hcChHHHHHHHHH
Q 015523 299 QKSRILKKLLKEQ 311 (405)
Q Consensus 299 ~~~~~l~~~l~~~ 311 (405)
..-+.+++.|++.
T Consensus 69 ~~~~~~~~~L~~~ 81 (137)
T PRK02261 69 IDCRGLREKCIEA 81 (137)
T ss_pred HHHHHHHHHHHhc
Confidence 2334555555544
No 406
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=31.15 E-value=92 Score=26.94 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=27.6
Q ss_pred CCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEch
Q 015523 280 ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCS 323 (405)
Q Consensus 280 ~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~ 323 (405)
|.+.|+++|.|... .+..+.++.+.++..+-|+|+|+++
T Consensus 79 PRhADvllVtG~VT-----~~m~~~l~~~~e~~p~pK~VIAvGs 117 (182)
T PRK14816 79 PRQADMIMVCGTIT-----NKMAPVLKRLYDQMADPKYVIAVGG 117 (182)
T ss_pred CCcceEEEEecCCc-----chhHHHHHHHHHhcCCCCEEEEecc
Confidence 36789999999742 1333455555667889999999865
No 407
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=31.14 E-value=2.7e+02 Score=22.91 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=59.1
Q ss_pred CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEec--CCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523 16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASV--EPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 93 (405)
Q Consensus 16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~--~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~ 93 (405)
+.++|+++-...-.+-.-......|.+.||++--+.| .++ .+. |.+..+ ++.+++ ...|+|-|
T Consensus 15 ~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~-eiL---G~k~y~--sL~dIp-e~IDiVdv-------- 79 (140)
T COG1832 15 SAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGE-EIL---GEKVYP--SLADIP-EPIDIVDV-------- 79 (140)
T ss_pred hCceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchH-Hhc---Cchhhh--cHHhCC-CCCcEEEE--------
Confidence 4679999998877777778888899999999999998 443 333 444443 455666 46788777
Q ss_pred ccccChHHHHHHHHHHHcC
Q 015523 94 RLRDCEILKKITSKQAEEK 112 (405)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~ 112 (405)
++..+.+.+.++++.+.+
T Consensus 80 -FR~~e~~~~i~~eal~~~ 97 (140)
T COG1832 80 -FRRSEAAPEVAREALEKG 97 (140)
T ss_pred -ecChhhhHHHHHHHHhhC
Confidence 445567777888888777
No 408
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=30.89 E-value=2.5e+02 Score=26.88 Aligned_cols=138 Identities=12% Similarity=0.031 Sum_probs=67.9
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 96 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~ 96 (405)
.+|+.|+.-++....-...+.+.|...++++.++...++.+-.+.....-.. ..+.+......|.|+-.|| ...
T Consensus 24 ~~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~-~~~~~~~~~r~d~IIaiGG-Gsv---- 97 (345)
T cd08195 24 GSKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLY-DALLEAGLDRKSLIIALGG-GVV---- 97 (345)
T ss_pred CCeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHH-HHHHHcCCCCCCeEEEECC-hHH----
Confidence 3678777755565544455667777778777755444331211111100000 0111111123488888887 222
Q ss_pred cChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC-CCCCcceeeccCccccCCCCccccCcEEEeCCeEcC
Q 015523 97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG-LLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTS 166 (405)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag-ll~g~~~t~~~~~~~~l~~~~~~~~~~v~dg~iiT~ 166 (405)
-++-+++...+.++.+++.+.+ . +++..+ ...++.+..+...+. +-...+....++.|..++.+
T Consensus 98 --~D~ak~vA~~~~rgip~i~VPT-T--~~a~vds~~~~k~~i~~~~~kn-~~g~~~~P~~viiD~~~l~t 162 (345)
T cd08195 98 --GDLAGFVAATYMRGIDFIQIPT-T--LLAQVDSSVGGKTGVNHPLGKN-LIGAFYQPKLVLIDTDFLKT 162 (345)
T ss_pred --HhHHHHHHHHHhcCCCeEEcch-h--HHHHhhccCCCcceecCCCCCc-eecccCCCCEEEEehHHhhh
Confidence 2345666666788999999998 3 245422 344444332222111 11111223346677665543
No 409
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=30.80 E-value=3.9e+02 Score=27.59 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=50.8
Q ss_pred CcCEEEEEeCCC-CcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523 219 RMPRVLIPIANG-SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 297 (405)
Q Consensus 219 ~~~~V~il~~~g-~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~ 297 (405)
..++|+++...| ....++..+.+.|+ .+|+++-+.+... ...++...+++ .++|+++|.+-.. .
T Consensus 182 ~~~~V~~l~ghGE~~~~~~~~l~~~L~-~~y~v~~l~l~~~---------~~~~~~ip~~l--~d~d~LvI~~P~~---~ 246 (552)
T TIGR03521 182 REKRIAVLKGNGELADLQIADLVSTLK-EYYFIAPFTLDSV---------AANPAKTLADL--KKFDLIVIAKPTE---A 246 (552)
T ss_pred cCceEEEEeCCCCCChHHHHHHHHHHH-hcCceeeecchhc---------ccCcccccccc--cCcCEEEEeCCCc---c
Confidence 458999998775 34445667777777 8888876665421 00111122222 4799999988531 1
Q ss_pred hhcChHHHHHHHHHhhcC-CEEEEE
Q 015523 298 LQKSRILKKLLKEQKVAG-RIYGAV 321 (405)
Q Consensus 298 ~~~~~~l~~~l~~~~~~~-k~i~ai 321 (405)
-.+.-+..|.++..+| +.+..+
T Consensus 247 --ls~~e~~~Ldqfl~~GG~ll~~~ 269 (552)
T TIGR03521 247 --FSEREKYILDQYIMNGGKALFLV 269 (552)
T ss_pred --CCHHHHHHHHHHHHcCCeEEEEe
Confidence 2345566666666555 444444
No 410
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=30.63 E-value=66 Score=30.15 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=57.3
Q ss_pred CCCCcEEEEEe-cCCCchhhHHHHHHHHHhcC--CEEEEEecCCCc--eeEeccCcEEecCcccCCCCCCcccEEEEcCC
Q 015523 14 PSFALNVLVPV-GFGTEEMEAVIIVDVLRRAG--AQVTMASVEPQL--EVEASSGTRLVADTSISNCSHQVFDLIALPGG 88 (405)
Q Consensus 14 ~~~~~ki~ill-~~g~~~~e~~~~~~~l~~~~--~~v~~vs~~~~~--~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg 88 (405)
..++.||+||= +|.=...| .-++..|.... ++++++.+..-. ....++=.++. .+++++....||++||.|.
T Consensus 32 dirpL~I~ILNLMP~K~~TE-~Q~lRlL~ntplqv~i~~~~~~sh~~k~t~~~hl~~fY--~~f~~ik~~~fDGlIITGA 108 (300)
T TIGR01001 32 DIRPLEILILNLMPKKIETE-NQFLRLLSNSPLQVNITLLRTDSRKSKNTPIEHLNKFY--TTFEAVKDRKFDGLIITGA 108 (300)
T ss_pred cccceeEEEEecCCccHHHH-HHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHHh--hCHHHHhcCCCCEEEEcCC
Confidence 45689999983 66666666 44556665543 556666654420 01111111111 2455555568999999997
Q ss_pred chhhhcccc---ChHHHHHHHHHHHcCCEEEEEccch
Q 015523 89 MPGSVRLRD---CEILKKITSKQAEEKRLYGAICAAP 122 (405)
Q Consensus 89 ~~~~~~~~~---~~~~~~~l~~~~~~~~~i~aic~g~ 122 (405)
....-.+.+ -+++.+.+.-.-++..-..-+|=|+
T Consensus 109 PvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaA 145 (300)
T TIGR01001 109 PVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAA 145 (300)
T ss_pred CcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 321111111 2344444444445667777888853
No 411
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.55 E-value=3.2e+02 Score=25.20 Aligned_cols=68 Identities=19% Similarity=0.160 Sum_probs=42.3
Q ss_pred cEEEEEecCCCchhhHH-HHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523 18 LNVLVPVGFGTEEMEAV-IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 96 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~-~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~ 96 (405)
.+|+|+..+.-...++. .+.++|++.|+++..- . .+.|.+++.||
T Consensus 3 ~~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~------------------------~--~~~D~vi~lGG-------- 48 (264)
T PRK03501 3 RNLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDH------------------------P--KNANIIVSIGG-------- 48 (264)
T ss_pred cEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcC------------------------C--CCccEEEEECC--------
Confidence 37888865544333332 3445577777755421 1 24799999999
Q ss_pred cChHHHHHHHHHHHc-CCEEEEEcc
Q 015523 97 DCEILKKITSKQAEE-KRLYGAICA 120 (405)
Q Consensus 97 ~~~~~~~~l~~~~~~-~~~i~aic~ 120 (405)
|..+++.++.+... ..||.++-.
T Consensus 49 -DGT~L~a~~~~~~~~~~pilgIn~ 72 (264)
T PRK03501 49 -DGTFLQAVRKTGFREDCLYAGIST 72 (264)
T ss_pred -cHHHHHHHHHhcccCCCeEEeEec
Confidence 35667777766543 678888777
No 412
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=30.25 E-value=82 Score=27.19 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=30.7
Q ss_pred CCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEcc
Q 015523 76 SHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICA 120 (405)
Q Consensus 76 ~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~ 120 (405)
++.++|+++|-|.. . .+....++.+.++..+.|+|+|+++
T Consensus 72 sPR~ADillVeG~V--T---~~m~~~l~~~~e~~p~pK~VIAvGa 111 (181)
T PRK14817 72 SPRQADLLMVVGTV--N---CKQAPILQRVYEQMADPKWVMAFGV 111 (181)
T ss_pred CCcceeEEEEEecC--C---ccchHHHHHHHHHcccCCEEEEecc
Confidence 44679999999973 1 1335567788999999999999955
No 413
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=30.18 E-value=1.3e+02 Score=27.65 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=48.5
Q ss_pred CcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh-------------
Q 015523 231 SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER------------- 297 (405)
Q Consensus 231 ~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~------------- 297 (405)
..+.-..-+.+.|...|+++.-+..-|..+-. |.. .+... ...+|.||+.||.+.+.+
T Consensus 18 ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~------I~~--~l~~a-~~r~D~vI~tGGLGPT~DDiT~e~vAka~g~ 88 (255)
T COG1058 18 IVDTNAAFLADELTELGVDLARITTVGDNPDR------IVE--ALREA-SERADVVITTGGLGPTHDDLTAEAVAKALGR 88 (255)
T ss_pred eecchHHHHHHHHHhcCceEEEEEecCCCHHH------HHH--HHHHH-HhCCCEEEECCCcCCCccHhHHHHHHHHhCC
Confidence 45666778889999999888877666540100 000 11111 234999999999864432
Q ss_pred -hhcChHHHHHHHHHhhc
Q 015523 298 -LQKSRILKKLLKEQKVA 314 (405)
Q Consensus 298 -~~~~~~l~~~l~~~~~~ 314 (405)
+..+++.+++|++++.+
T Consensus 89 ~lv~~~~al~~i~~~~~~ 106 (255)
T COG1058 89 PLVLDEEALAMIEEKYAK 106 (255)
T ss_pred CcccCHHHHHHHHHHHHh
Confidence 24588999999998754
No 414
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=30.10 E-value=2.5e+02 Score=26.93 Aligned_cols=222 Identities=13% Similarity=0.053 Sum_probs=120.3
Q ss_pred ChHHHHHHHHHHHcCCEEEE--------EccchHHhhhhcCCCCCcceeeccCccccCCC---CccccCcEEEeCCeEcC
Q 015523 98 CEILKKITSKQAEEKRLYGA--------ICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT---FWAVKSNIHVSGEVTTS 166 (405)
Q Consensus 98 ~~~~~~~l~~~~~~~~~i~a--------ic~g~~~~La~agll~g~~~t~~~~~~~~l~~---~~~~~~~~v~dg~iiT~ 166 (405)
+.--...+..+-++|+..=+ .++=|. -||-.+-+.|.++..---..=..++ .......++....=.--
T Consensus 84 dRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGi-gLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~ 162 (362)
T KOG1252|consen 84 DRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGI-GLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGM 162 (362)
T ss_pred HHHHHHHHHHHHHcCCccCCceEEEecCCCchHH-HHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHcc
Confidence 34445566666666643322 133233 5777888899997543211111111 00011122222210111
Q ss_pred CCcccHHHHHHHHHHHhcChHHHHHHHHhcccccccCccccccccccccccCCcCEEEEEeCCCCcHHHHHHHHHHHHhC
Q 015523 167 RGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRA 246 (405)
Q Consensus 167 ~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~il~~~g~~~~e~~~~~~~l~~~ 246 (405)
.|+.++.+-+..++.++-+.-++++-. -...+. -+++..-+=-|.+. ..+|-++++.-=.--.++++-..+.+.
T Consensus 163 ~~~e~ai~~a~~l~~~~pna~~l~Qf~----np~Np~-~hy~ttg~EI~~q~-~g~vDi~V~gaGTGGTitgvGRylke~ 236 (362)
T KOG1252|consen 163 KGPESAIGKAEELLNKTPNAYILDQFH----NPGNPL-AHYETTGPEIWRQL-DGKVDIFVAGAGTGGTITGVGRYLKEQ 236 (362)
T ss_pred CChHHHHHHHHHHHHhCCChHHHHHhc----CCCCcc-cccccccHHHHHHh-cCCCCEEEeccCCCceeechhHHHHHh
Confidence 233557888888888888776555432 222222 12333222223222 467888887633444567778888888
Q ss_pred CCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh-----hhcChHHHHHHHHHhhcCCEEEEE
Q 015523 247 KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-----LQKSRILKKLLKEQKVAGRIYGAV 321 (405)
Q Consensus 247 ~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~-----~~~~~~l~~~l~~~~~~~k~i~ai 321 (405)
|-.++++..+...++..+.+..=...+.++. -.|| ++|+-. +... ...+++.+..-|+...+-..++++
T Consensus 237 ~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~G---IGyg--~~p~~l-d~~~vd~~~~~~~d~A~~~Ar~La~eeGll~G~ 310 (362)
T KOG1252|consen 237 NPNIKVVGVDPQESIVLSGGKPGPTFHKIQG---IGYG--FIPTTL-DTKLVDEVLKVSSDEAIEMARRLALEEGLLVGI 310 (362)
T ss_pred CCCCEEEEeCCCcceeccCCCCCCCccceec---cccC--cCcccc-chHHHHHHHHhCCHHHHHHHHHHHHhhCeeecc
Confidence 8888888887753444433222112233333 3566 677653 2211 235677777788888888899999
Q ss_pred chHHHHHHHcC
Q 015523 322 CSSPIVLHKHG 332 (405)
Q Consensus 322 c~g~~~La~aG 332 (405)
.+|+.++|+.-
T Consensus 311 SSGan~~aAl~ 321 (362)
T KOG1252|consen 311 SSGANVAAALK 321 (362)
T ss_pred cchHHHHHHHH
Confidence 99999888754
No 415
>PRK13055 putative lipid kinase; Reviewed
Probab=30.07 E-value=1.9e+02 Score=27.69 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=36.0
Q ss_pred CcEEEEEecCCCc----hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCC
Q 015523 17 ALNVLVPVGFGTE----EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG 88 (405)
Q Consensus 17 ~~ki~ill~~g~~----~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg 88 (405)
++|+.|++.|..- ...+..+...|+..++++++...... +-. ...+. .+.....+|.|++.||
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~-~~~---a~~~~-----~~~~~~~~d~vvv~GG 68 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPE-PNS---AKNEA-----KRAAEAGFDLIIAAGG 68 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecC-Ccc---HHHHH-----HHHhhcCCCEEEEECC
Confidence 4689999887432 23345667888888988776543321 000 00011 1111135899999999
No 416
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.99 E-value=71 Score=29.41 Aligned_cols=34 Identities=12% Similarity=0.008 Sum_probs=28.7
Q ss_pred cccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 79 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 79 ~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
++|++++.|| |..+++.++.+...+.||.+|-.|
T Consensus 33 ~~D~vi~iGG---------DGT~L~a~~~~~~~~iPilGIN~G 66 (259)
T PRK00561 33 GADYLFVLGG---------DGFFVSTAANYNCAGCKVVGINTG 66 (259)
T ss_pred CCCEEEEECC---------cHHHHHHHHHhcCCCCcEEEEecC
Confidence 5899999999 456778888888889999999885
No 417
>PRK13337 putative lipid kinase; Reviewed
Probab=29.91 E-value=1.9e+02 Score=27.09 Aligned_cols=96 Identities=14% Similarity=0.159 Sum_probs=50.2
Q ss_pred CcEEEEEecCCCc----hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh
Q 015523 17 ALNVLVPVGFGTE----EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 92 (405)
Q Consensus 17 ~~ki~ill~~g~~----~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~ 92 (405)
|+|+.+++.+..- ...+......|++.++++++...+...... .+. .+.....+|.|++.|| .
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~-----~~a-----~~~~~~~~d~vvv~GG-D-- 67 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDAT-----LAA-----ERAVERKFDLVIAAGG-D-- 67 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHH-----HHH-----HHHHhcCCCEEEEEcC-C--
Confidence 3688888877432 223445566788889888776544321110 111 1111135799999999 2
Q ss_pred hccccChHHHHHHHHHHHc--CCEEEEEccchHHhhhh-cCC
Q 015523 93 VRLRDCEILKKITSKQAEE--KRLYGAICAAPAVTLLP-WGL 131 (405)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~--~~~i~aic~g~~~~La~-agl 131 (405)
..+.+.+...... ..+++.+=.|..=.+|+ .|+
T Consensus 68 ------GTl~~vv~gl~~~~~~~~lgiiP~GT~NdfAr~lgi 103 (304)
T PRK13337 68 ------GTLNEVVNGIAEKENRPKLGIIPVGTTNDFARALHV 103 (304)
T ss_pred ------CHHHHHHHHHhhCCCCCcEEEECCcCHhHHHHHcCC
Confidence 3344444443323 34677664432213443 354
No 418
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=29.70 E-value=1.3e+02 Score=27.74 Aligned_cols=55 Identities=11% Similarity=0.215 Sum_probs=39.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccC
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISD 277 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~ 277 (405)
|||.|--=||....-+..+.+.|...+ +|.+++|..+ .--+++++++.....+.+
T Consensus 1 M~ILlTNDDGi~apGi~aL~~al~~~g-~V~VvAP~~e-qSg~g~aiT~~~pl~~~~ 55 (266)
T PRK13934 1 MKILVTNDDGVHSPGLRLLYEFVSPLG-EVDVVAPETP-KSATGLGITLHKPLRMYE 55 (266)
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhCC-cEEEEccCCC-CccccccccCCCCcEEEE
Confidence 467777778999999999999998876 8999999987 433444444443333333
No 419
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=29.45 E-value=2.9e+02 Score=26.88 Aligned_cols=96 Identities=11% Similarity=0.072 Sum_probs=57.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCe-EEEEeecCCceee-cCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVD-VVVASVERSTQIV-ASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 298 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~-v~~vs~~~~~~v~-~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~ 298 (405)
.+|+++..+.....|...+...++..|.. ++.-......... ...|.. ....+++++ .+.|.+++.|.- ..
T Consensus 88 ~~i~~i~g~~~t~E~~~~lkkl~~~lgs~n~d~~~~~~~~~~~~~~~~~~-~~~~sl~di--e~ad~illiG~n--~~-- 160 (366)
T cd02774 88 SKLNFIIGSKIDLETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLDLENY-LFNNSLKNL--DKSDLCLLIGSN--LR-- 160 (366)
T ss_pred ccEEEEECCCCCHHHHHHHHHHHHHhCCCceeccccccccccccccccCC-ccCCCHHHH--hhCCEEEEEcCC--cc--
Confidence 47899999988888888888877755522 2111000000110 000111 123467777 789999999973 32
Q ss_pred hcChHHHHHHHHHhhc-CCEEEEEch
Q 015523 299 QKSRILKKLLKEQKVA-GRIYGAVCS 323 (405)
Q Consensus 299 ~~~~~l~~~l~~~~~~-~k~i~aic~ 323 (405)
.+.+-+-..||+...+ +..|+.|..
T Consensus 161 ~e~Pvl~~rlrka~~~~~~ki~vi~~ 186 (366)
T cd02774 161 VESPILNIRLRNRYNKGNKKIFVIGN 186 (366)
T ss_pred hhhHHHHHHHHHHHHcCCCEEEEeCC
Confidence 2567788888887744 667777754
No 420
>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....
Probab=29.24 E-value=63 Score=26.22 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=30.4
Q ss_pred cccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEcc
Q 015523 79 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICA 120 (405)
Q Consensus 79 ~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~ 120 (405)
+.|+++|=|... ..+....++++++.++.+.|+|+++
T Consensus 45 ~~diliVeG~v~-----~~~~~~~e~~~~~~~~a~~vIAvGt 81 (131)
T PF01058_consen 45 EADILIVEGSVP-----RNMEEALEWLKELRPKAKAVIAVGT 81 (131)
T ss_dssp TTEEEEEESBEE-----TGGEEHHHHHHHHHGCSSEEEEEHH
T ss_pred CceEEEEEeecc-----CCchHHHHHHHHHccCCceeEcCCC
Confidence 689999999831 1236788999999999999999966
No 421
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=29.23 E-value=1.2e+02 Score=26.42 Aligned_cols=100 Identities=16% Similarity=0.109 Sum_probs=49.3
Q ss_pred EEEEEecCCCc--hhhHHHHHHHHHhc-CCEEEEEecCCCc--eeE-eccCc--EEecCcccCCCCCCcccEEEEcCCch
Q 015523 19 NVLVPVGFGTE--EMEAVIIVDVLRRA-GAQVTMASVEPQL--EVE-ASSGT--RLVADTSISNCSHQVFDLIALPGGMP 90 (405)
Q Consensus 19 ki~ill~~g~~--~~e~~~~~~~l~~~-~~~v~~vs~~~~~--~v~-~~~g~--~v~~~~~~~~~~~~~~d~liipgg~~ 90 (405)
||+|+-+...- ..=...+.+-+++. +.+++++...... .+. ..+.. ...+.....++ .++|+|++-....
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~GSPty 79 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQEL--ADYDAIIFGTPTR 79 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHH--HHCCEEEEEeccc
Confidence 68888766432 22233445556554 8888887654310 010 00000 00111112222 3689998855311
Q ss_pred hhhccccChHHHHHHHHHH-------HcCCEEEEEccchH
Q 015523 91 GSVRLRDCEILKKITSKQA-------EEKRLYGAICAAPA 123 (405)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~-------~~~~~i~aic~g~~ 123 (405)
.-.-.+.+..|+.+.. -.+|+.+.++++++
T Consensus 80 ---~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~ 116 (197)
T TIGR01755 80 ---FGNMASQMRNFLDQTGGLWASGALVGKVGSVFTSTGT 116 (197)
T ss_pred ---ccCccHHHHHHHHhccccccccccCCCEEEEEEECCC
Confidence 1112345566665542 23788888888644
No 422
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=29.18 E-value=48 Score=25.95 Aligned_cols=57 Identities=12% Similarity=0.203 Sum_probs=38.0
Q ss_pred EEEEEeCC-CCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcC
Q 015523 222 RVLIPIAN-GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG 290 (405)
Q Consensus 222 ~V~il~~~-g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpg 290 (405)
|+.+.... ...+..+..+...|++.|+++.++..+.. . +...+.+...++|+|.+-.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~-~-----------~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVP-P-----------EELVEALRAERPDVVGISV 59 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB--H-----------HHHHHHHHHTTCSEEEEEE
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCC-H-----------HHHHHHHhcCCCcEEEEEc
Confidence 45555555 45788999999999999999998866542 1 2122222235789988855
No 423
>PLN02929 NADH kinase
Probab=29.14 E-value=2.4e+02 Score=26.67 Aligned_cols=66 Identities=20% Similarity=0.124 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHH
Q 015523 232 EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQ 311 (405)
Q Consensus 232 ~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~ 311 (405)
+..-+-.+.+.|.+.|+++..+.... + . +. ..+.|++++.|| |..+++..+.+
T Consensus 32 h~~~~~~~~~~L~~~gi~~~~v~r~~-----------~--~---~~--~~~~Dlvi~lGG---------DGT~L~aa~~~ 84 (301)
T PLN02929 32 HKDTVNFCKDILQQKSVDWECVLRNE-----------L--S---QP--IRDVDLVVAVGG---------DGTLLQASHFL 84 (301)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeeccc-----------c--c---cc--cCCCCEEEEECC---------cHHHHHHHHHc
Confidence 44445567888999998885553211 0 0 11 156799999999 44677777766
Q ss_pred hhcCCEEEEEchHH
Q 015523 312 KVAGRIYGAVCSSP 325 (405)
Q Consensus 312 ~~~~k~i~aic~g~ 325 (405)
..+.||.+|-.|+
T Consensus 85 -~~~iPvlGIN~Gp 97 (301)
T PLN02929 85 -DDSIPVLGVNSDP 97 (301)
T ss_pred -CCCCcEEEEECCC
Confidence 7889999999984
No 424
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=29.03 E-value=3.3e+02 Score=25.60 Aligned_cols=96 Identities=14% Similarity=0.030 Sum_probs=53.1
Q ss_pred CCCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEe---------cCcccCCC-CCCcccEEE
Q 015523 15 SFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLV---------ADTSISNC-SHQVFDLIA 84 (405)
Q Consensus 15 ~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~---------~~~~~~~~-~~~~~d~li 84 (405)
+..|||+|+ --|..-.-+ .-.|.++|.+|.+++.+.. ......|+++. +-...+.. ....+|.+|
T Consensus 3 ~~~m~I~Ii-G~GaiG~~l---A~~L~~~g~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 77 (313)
T PRK06249 3 SETPRIGII-GTGAIGGFY---GAMLARAGFDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVL 77 (313)
T ss_pred CcCcEEEEE-CCCHHHHHH---HHHHHHCCCeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEE
Confidence 345689988 445444443 3446778999999987652 21112232221 11111111 123589888
Q ss_pred EcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 85 LPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 85 ipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
+.-= ......+.+.+......+..|..+.+|
T Consensus 78 lavK------~~~~~~~~~~l~~~~~~~~~iv~lqNG 108 (313)
T PRK06249 78 VGLK------TTANALLAPLIPQVAAPDAKVLLLQNG 108 (313)
T ss_pred EEec------CCChHhHHHHHhhhcCCCCEEEEecCC
Confidence 8642 012345667777777677788888775
No 425
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=28.91 E-value=4.2e+02 Score=25.47 Aligned_cols=92 Identities=11% Similarity=0.033 Sum_probs=53.8
Q ss_pred CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecC--CceeecCC-CcEEeeCCCccCcCCCCccEEEEcCCccch
Q 015523 219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVER--STQIVASQ-GVKIIADKSISDAAESVYDLIILPGGVAGA 295 (405)
Q Consensus 219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~--~~~v~~~~-g~~v~~~~~l~~~~~~~~D~livpgG~~~~ 295 (405)
+.+||+|+-..|+.-.|+.-.+.--....+++..++... |+++.-.. .+.+. .+++.+..+.|++|+..++.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~---~~~~~~~~~~Dvvf~a~p~~-- 77 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ---DAAEFDWSQAQLAFFVAGRE-- 77 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE---eCchhhccCCCEEEECCCHH--
Confidence 457999999999999997765544222456777666542 22444211 23333 23333335789999876542
Q ss_pred HhhhcChHHHHHHHHHhhcCCEEEEEc
Q 015523 296 ERLQKSRILKKLLKEQKVAGRIYGAVC 322 (405)
Q Consensus 296 ~~~~~~~~l~~~l~~~~~~~k~i~aic 322 (405)
...+|..++.++|..|+-..
T Consensus 78 -------~s~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 78 -------ASAAYAEEATNAGCLVIDSS 97 (336)
T ss_pred -------HHHHHHHHHHHCCCEEEECC
Confidence 33455555555666555443
No 426
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=28.81 E-value=30 Score=29.16 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=29.2
Q ss_pred CCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEch
Q 015523 279 AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCS 323 (405)
Q Consensus 279 ~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~ 323 (405)
+.++||.|+|..- .+...-...+..+|++..-+||.|+-.|+
T Consensus 70 d~~~YD~I~lG~P---vW~~~~~~pv~tFL~~~~~~gK~v~~F~T 111 (156)
T PF12682_consen 70 DLSDYDTIFLGTP---VWWGTPPPPVRTFLEQYDFSGKTVIPFCT 111 (156)
T ss_dssp -GGG-SEEEEEEE---EETTEE-CHHHHHHHCTTTTTSEEEEEEE
T ss_pred CcccCCEEEEech---HHcCCCCHHHHHHHHhcCCCCCcEEEEEe
Confidence 4488999999542 22333567899999988778999988876
No 427
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.79 E-value=66 Score=29.22 Aligned_cols=61 Identities=3% Similarity=-0.057 Sum_probs=34.9
Q ss_pred EEEEEeCC---CCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCC
Q 015523 222 RVLIPIAN---GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG 291 (405)
Q Consensus 222 ~V~il~~~---g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG 291 (405)
+|++++.+ .|...-+.++.+.+.+.|+++.+....+. +- . ....++.+.....|++|+.+.
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~-~~-~-------~~~~i~~~~~~~~Dgiii~~~ 64 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGYELISTDAQGD-LT-K-------QIADVEDLLTRGVNVLIINPV 64 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCCEEEEEcCCCC-HH-H-------HHHHHHHHHHcCCCEEEEecC
Confidence 46777754 34455555777888888998877654332 10 0 011223333357899998543
No 428
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=28.64 E-value=1.2e+02 Score=25.46 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=31.6
Q ss_pred CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeec
Q 015523 219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVE 256 (405)
Q Consensus 219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~ 256 (405)
..+|+.|++.||....++..+...|+..|..+-.++..
T Consensus 105 ~~~kv~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~ 142 (165)
T cd01481 105 GVPQFLVLITGGKSQDDVERPAVALKRAGIVPFAIGAR 142 (165)
T ss_pred CCCeEEEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC
Confidence 34799999999998888999999999999777666553
No 429
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=28.42 E-value=1.1e+02 Score=26.62 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=31.2
Q ss_pred CcEEEEEecCCCchh----hHHHHHHHHHhcCCEEEEEecCC
Q 015523 17 ALNVLVPVGFGTEEM----EAVIIVDVLRRAGAQVTMASVEP 54 (405)
Q Consensus 17 ~~ki~ill~~g~~~~----e~~~~~~~l~~~~~~v~~vs~~~ 54 (405)
..||+||+.||.+.. .+..+...++..|..+..++...
T Consensus 108 ~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~ 149 (192)
T cd01473 108 APKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGA 149 (192)
T ss_pred CCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEecc
Confidence 379999999998853 45667788999999999998854
No 430
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=28.23 E-value=5.5e+02 Score=24.78 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=48.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 300 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~ 300 (405)
+|+.|+.-++....-...+.+.|...|+++.++...++++-.+...+.-.. ..+.+...+.-|.|+-.||- ..-
T Consensus 24 ~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~-~~~~~~~~dr~~~IIAvGGG-sv~---- 97 (355)
T cd08197 24 DKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLV-ERALALGATRRSVIVALGGG-VVG---- 97 (355)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHH-HHHHHcCCCCCcEEEEECCc-HHH----
Confidence 577776666665554456778888888877655444331111110000000 01111111233488866662 122
Q ss_pred ChHHHHHHHHHhhcCCEEEEEchH
Q 015523 301 SRILKKLLKEQKVAGRIYGAVCSS 324 (405)
Q Consensus 301 ~~~l~~~l~~~~~~~k~i~aic~g 324 (405)
++-.++...+..|.+++.|.+.
T Consensus 98 --D~ak~~A~~~~rgip~I~IPTT 119 (355)
T cd08197 98 --NIAGLLAALLFRGIRLVHIPTT 119 (355)
T ss_pred --HHHHHHHHHhccCCCEEEecCc
Confidence 3333333345578899999985
No 431
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=27.93 E-value=1.2e+02 Score=25.47 Aligned_cols=93 Identities=20% Similarity=0.197 Sum_probs=53.6
Q ss_pred CcCEEEEEeCCCC---cHHHHHHHHHHHHhCC---CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcC--
Q 015523 219 RMPRVLIPIANGS---EEIEIVTIVDILRRAK---VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG-- 290 (405)
Q Consensus 219 ~~~~V~il~~~g~---~~~e~~~~~~~l~~~~---~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpg-- 290 (405)
...||+|+...-. ...=+.++.+.|.+.| ..++++..-|- .-+.+.....+. ..+||+++..|
T Consensus 11 ~~~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPGa------~EiP~a~~~l~~---~~~~DavIalG~V 81 (154)
T PRK00061 11 KGLRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPGA------FEIPLAAKKLAE---SGKYDAVIALGAV 81 (154)
T ss_pred CCCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCCH------HHHHHHHHHHHH---cCCCCEEEEEeeE
Confidence 4579999997643 3366778888999888 56666654441 111111111111 25799998877
Q ss_pred --CccchHhhhcChHHHHHHHHHhhcCCEEEE
Q 015523 291 --GVAGAERLQKSRILKKLLKEQKVAGRIYGA 320 (405)
Q Consensus 291 --G~~~~~~~~~~~~l~~~l~~~~~~~k~i~a 320 (405)
|......+..+.-...+.+-..+.++||+.
T Consensus 82 IrG~T~H~e~V~~~v~~gl~~v~l~~~~PV~~ 113 (154)
T PRK00061 82 IRGETPHFDYVANEVAKGLADVSLETGVPVGF 113 (154)
T ss_pred EcCCCchHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 321223333444444555555678888764
No 432
>PRK09267 flavodoxin FldA; Validated
Probab=27.81 E-value=2e+02 Score=24.19 Aligned_cols=84 Identities=20% Similarity=0.177 Sum_probs=42.5
Q ss_pred cCEEEEEeCCCCcHHHH-H-HHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523 220 MPRVLIPIANGSEEIEI-V-TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 297 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~-~-~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~ 297 (405)
|++|+|+-+...--.+- + .+.+.|.. ..++++..... ...++ .+||.+++.........
T Consensus 1 mmki~IiY~S~tGnT~~vA~~Ia~~l~~--~~~~~~~~~~~---------------~~~~l--~~~d~vi~g~pt~~~G~ 61 (169)
T PRK09267 1 MAKIGIFFGSDTGNTEDIAKMIQKKLGK--DVADVVDIAKA---------------SKEDF--EAYDLLILGIPTWGYGE 61 (169)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHhCC--CceEEEEhhhC---------------CHhhH--hhCCEEEEEecCcCCCC
Confidence 46888888775544443 2 22344432 23444433221 11233 67999888754321111
Q ss_pred hhcChHHHHHHHHH---hhcCCEEEEEchH
Q 015523 298 LQKSRILKKLLKEQ---KVAGRIYGAVCSS 324 (405)
Q Consensus 298 ~~~~~~l~~~l~~~---~~~~k~i~aic~g 324 (405)
..+...+++... .-++|+++.++.|
T Consensus 62 --~~~~~~~fl~~~~~~~l~~k~vaifg~g 89 (169)
T PRK09267 62 --LQCDWDDFLPELEEIDFSGKKVALFGLG 89 (169)
T ss_pred --CCHHHHHHHHHHhcCCCCCCEEEEEecC
Confidence 123444555543 2357888888754
No 433
>PRK07308 flavodoxin; Validated
Probab=27.68 E-value=2.3e+02 Score=23.11 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=42.2
Q ss_pred EEEEEecC--CCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523 19 NVLVPVGF--GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 96 (405)
Q Consensus 19 ki~ill~~--g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~ 96 (405)
|+.|+.+. |-+..=...+.+.|+..+..+++...... . ..++ .++|.|++.....+...+
T Consensus 3 ~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~-~--------------~~~l--~~~d~vi~g~~t~g~G~~- 64 (146)
T PRK07308 3 LAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTV-D--------------ASDF--EDADIAIVATYTYGDGEL- 64 (146)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccC-C--------------HhHh--ccCCEEEEEeCccCCCCC-
Confidence 56666543 22333334455777777877776544332 1 1123 258888884321111111
Q ss_pred cChHHHHHHHHH---HHcCCEEEEEccc
Q 015523 97 DCEILKKITSKQ---AEEKRLYGAICAA 121 (405)
Q Consensus 97 ~~~~~~~~l~~~---~~~~~~i~aic~g 121 (405)
.+.+.+|+... .-+++.++.++.|
T Consensus 65 -p~~~~~fl~~l~~~~l~~k~~~vfG~G 91 (146)
T PRK07308 65 -PDEIVDFYEDLADLDLSGKIYGVVGSG 91 (146)
T ss_pred -CHHHHHHHHHHhcCCCCCCEEEEEeeC
Confidence 23455555443 3356777777663
No 434
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=27.40 E-value=95 Score=26.92 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=29.4
Q ss_pred CCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEcc
Q 015523 76 SHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICA 120 (405)
Q Consensus 76 ~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~ 120 (405)
.+.+.|+++|-|.. .. +..+.++.+.++..+.|+|+|+++
T Consensus 71 sPr~aDvllV~G~v--t~---~~~~~l~~~~e~mp~pk~VIA~Ga 110 (183)
T PRK06411 71 SPRQADLMIVAGTL--TN---KMAPALRRLYDQMPEPKWVISMGS 110 (183)
T ss_pred CCCceeEEEEEeCC--Cc---cchHHHHHHHHHcCcCCeEEEEec
Confidence 34579999999983 11 235666677778888999999955
No 435
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=27.36 E-value=1.2e+02 Score=25.75 Aligned_cols=41 Identities=20% Similarity=0.075 Sum_probs=30.1
Q ss_pred CcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchH
Q 015523 78 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPA 123 (405)
Q Consensus 78 ~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~ 123 (405)
.+||.|++-.+. +.-..++.+++||.+. ++|.|+.+++.|.
T Consensus 38 ~~yD~i~lG~w~---d~G~~d~~~~~fl~~l--~~KkV~lF~T~G~ 78 (160)
T PF12641_consen 38 EDYDLIFLGFWI---DKGTPDKDMKEFLKKL--KGKKVALFGTAGA 78 (160)
T ss_pred CCCCEEEEEcCc---cCCCCCHHHHHHHHHc--cCCeEEEEEecCC
Confidence 479999997762 3334678999999985 5677877777554
No 436
>PF09558 DUF2375: Protein of unknown function (DUF2375); InterPro: IPR014271 Two members of this family are found in Colwellia psychrerythraea (strain 34H / ATCC BAA-681) and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by IPR013424 from INTERPRO.
Probab=27.13 E-value=45 Score=23.45 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=16.2
Q ss_pred HHhhcCCEEEEEchHHH-HHHH
Q 015523 310 EQKVAGRIYGAVCSSPI-VLHK 330 (405)
Q Consensus 310 ~~~~~~k~i~aic~g~~-~La~ 330 (405)
+.+++||.|+++|.|-. +|-.
T Consensus 41 ~~Fr~GKsIiAVleGe~~iLns 62 (71)
T PF09558_consen 41 QSFRRGKSIIAVLEGECKILNS 62 (71)
T ss_pred HHHcCCceEEEEEcCceehhhh
Confidence 45788999999999976 4443
No 437
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=26.91 E-value=1.4e+02 Score=26.05 Aligned_cols=39 Identities=18% Similarity=0.082 Sum_probs=29.4
Q ss_pred CCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHH
Q 015523 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 326 (405)
Q Consensus 281 ~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~ 326 (405)
+.+|++||-|| . ..+.+++++-+..+.|..|++-+.-.-
T Consensus 101 ~~~daiFIGGg-~------~i~~ile~~~~~l~~ggrlV~naitlE 139 (187)
T COG2242 101 PSPDAIFIGGG-G------NIEEILEAAWERLKPGGRLVANAITLE 139 (187)
T ss_pred CCCCEEEECCC-C------CHHHHHHHHHHHcCcCCeEEEEeecHH
Confidence 47999999988 3 456788888888778777777665444
No 438
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=26.71 E-value=1.2e+02 Score=28.80 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=57.0
Q ss_pred CCCCCcEEEEEecC---CCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCc
Q 015523 13 SPSFALNVLVPVGF---GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGM 89 (405)
Q Consensus 13 ~~~~~~ki~ill~~---g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~ 89 (405)
.+.+..+|++++.+ .|...-+.++.+.+++.|+.+.+...... + .. ....+..+....+|++|+.+..
T Consensus 21 ~~~~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~-~-~~-------~~~~i~~l~~~~vDGiIi~~~~ 91 (330)
T PRK10355 21 AHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGN-E-ET-------QMSQIENMINRGVDVLVIIPYN 91 (330)
T ss_pred ccCCCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCCC-H-HH-------HHHHHHHHHHcCCCEEEEeCCC
Confidence 34457899999953 46677778888888999999998865432 1 00 0011122222368999996541
Q ss_pred hhhhccccChHHHHHHHHHHHcCCEEEEEcc
Q 015523 90 PGSVRLRDCEILKKITSKQAEEKRLYGAICA 120 (405)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~ 120 (405)
.....++++...+++-|++.+..
T Consensus 92 --------~~~~~~~l~~~~~~~iPvV~id~ 114 (330)
T PRK10355 92 --------GQVLSNVIKEAKQEGIKVLAYDR 114 (330)
T ss_pred --------hhhHHHHHHHHHHCCCeEEEECC
Confidence 11233556666677888888754
No 439
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=26.57 E-value=3.2e+02 Score=22.49 Aligned_cols=87 Identities=20% Similarity=0.173 Sum_probs=45.2
Q ss_pred cCEEEEEeCCC--CcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523 220 MPRVLIPIANG--SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 297 (405)
Q Consensus 220 ~~~V~il~~~g--~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~ 297 (405)
|++|+|+-+.. ....=.-.+.+.|...++++.+-.... +.+.....||.+++.........
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~~~~~~~~~~-----------------~~~~~~~~~d~~~~g~~t~~~ge 63 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGADGFEVDIDIRPG-----------------IKDDLLESYDELLLGTPTWGAGE 63 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccCCceEEEeecCC-----------------cchhhhccCCEEEEEeCCCCCCc
Confidence 57888887663 333333445666666667763332222 12211146888888664433333
Q ss_pred hh-cChHHHHHHHHHhhcCCEEEEEch
Q 015523 298 LQ-KSRILKKLLKEQKVAGRIYGAVCS 323 (405)
Q Consensus 298 ~~-~~~~l~~~l~~~~~~~k~i~aic~ 323 (405)
+. +-.++..-+....-.++.++.++.
T Consensus 64 ~~~~~~~f~~~~~~~~~~~k~~a~~g~ 90 (151)
T COG0716 64 LPDDWYDFIEELEPIDFKGKLVAVFGL 90 (151)
T ss_pred CCccHHHHHHHhcccCcCCceEEEEec
Confidence 32 333444444443456677766655
No 440
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=26.51 E-value=1.1e+02 Score=27.48 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=29.8
Q ss_pred CCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEch
Q 015523 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCS 323 (405)
Q Consensus 281 ~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~ 323 (405)
.+.|+++|-|+.. .++....+.++++.++.|+|+|+++
T Consensus 49 ~~~dil~VeG~i~-----~~~~~~~~~~~~~~~~ak~vVA~Gt 86 (228)
T TIGR03294 49 PEMDVALVEGSVC-----LQDEHSLEEIKELREKAKVVVALGA 86 (228)
T ss_pred CCccEEEEeCCCC-----CCccHHHHHHHHHhccCCEEEEeec
Confidence 4589999999752 1344578889999999999999865
No 441
>PRK13337 putative lipid kinase; Reviewed
Probab=26.49 E-value=2.5e+02 Score=26.28 Aligned_cols=95 Identities=16% Similarity=0.190 Sum_probs=49.8
Q ss_pred cCEEEEEeCCC--Cc--HHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch
Q 015523 220 MPRVLIPIANG--SE--EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 295 (405)
Q Consensus 220 ~~~V~il~~~g--~~--~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~ 295 (405)
|+|+.+++-+. .. ...+......|.+.++++++...+...... ....+.....+|.|++.||-
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~----------~~a~~~~~~~~d~vvv~GGD--- 67 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDAT----------LAAERAVERKFDLVIAAGGD--- 67 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHH----------HHHHHHHhcCCCEEEEEcCC---
Confidence 46788877653 22 233445666788899888776555320110 00111111457888888884
Q ss_pred HhhhcChHHHHHHHHHhhc--CCEEEEEchHHH--HHHHcCC
Q 015523 296 ERLQKSRILKKLLKEQKVA--GRIYGAVCSSPI--VLHKHGL 333 (405)
Q Consensus 296 ~~~~~~~~l~~~l~~~~~~--~k~i~aic~g~~--~La~aGl 333 (405)
..+.+.++.+... ..+++-+=.|+. +.-..|+
T Consensus 68 ------GTl~~vv~gl~~~~~~~~lgiiP~GT~NdfAr~lgi 103 (304)
T PRK13337 68 ------GTLNEVVNGIAEKENRPKLGIIPVGTTNDFARALHV 103 (304)
T ss_pred ------CHHHHHHHHHhhCCCCCcEEEECCcCHhHHHHHcCC
Confidence 2344444444422 335666655555 3334454
No 442
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=26.06 E-value=4.2e+02 Score=23.41 Aligned_cols=108 Identities=19% Similarity=0.140 Sum_probs=68.9
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEec--------cCc--EEecCcccCCCCCCcccEEE--
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS--------SGT--RLVADTSISNCSHQVFDLIA-- 84 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~--------~g~--~v~~~~~~~~~~~~~~d~li-- 84 (405)
..+|.|++-+|=+-.+-......|...|++|+++-.....++.+. -+. .+.. ....+ .+.++|+||
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~-~~~~~-~~~~~dvIVDa 126 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKI-KELED-EPESADVIVDA 126 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCCcceee-ccccc-ccccCCEEEEe
Confidence 568999999999999999999999999999998886654233332 111 1111 11111 123455544
Q ss_pred --EcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCC
Q 015523 85 --LPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLL 132 (405)
Q Consensus 85 --ipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll 132 (405)
=.|. ... -.+++...+....+++++|.|+-. |.=+-+.+|-.
T Consensus 127 lfG~G~---~g~--lrep~a~~Ie~iN~~~~pivAVDi-PSGl~~dtG~~ 170 (203)
T COG0062 127 LFGTGL---SGP--LREPFASLIEAINASGKPIVAVDI-PSGLDADTGEV 170 (203)
T ss_pred ceecCC---CCC--CccHHHHHHHHHHhcCCceEEEeC-CCCcCCCCCcc
Confidence 2333 111 235677778888899999999976 54345566643
No 443
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=25.92 E-value=1.5e+02 Score=24.64 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=31.0
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCC
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEP 54 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~ 54 (405)
.+|+.||+.||....++....+.+++.|+++..++...
T Consensus 103 ~~k~iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g~ 140 (164)
T cd01482 103 VPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVKD 140 (164)
T ss_pred CCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEecCc
Confidence 46899999999887777777888888899988887643
No 444
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=25.85 E-value=84 Score=28.89 Aligned_cols=84 Identities=11% Similarity=0.062 Sum_probs=47.7
Q ss_pred EEEEEeCC---CCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523 222 RVLIPIAN---GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 298 (405)
Q Consensus 222 ~V~il~~~---g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~ 298 (405)
.|++++.+ .|...=+.++.+.+.+.|+.+.+.....+ +-. ....++.+....+|++++.+..
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~--------~~~~i~~~~~~~vdgiii~~~~------ 65 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKELGAEVIVQNANGD-PAK--------QISQIENMIAKGVDVLVIAPVD------ 65 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCC-HHH--------HHHHHHHHHHcCCCEEEEecCC------
Confidence 36777754 34555556777888888999988765442 110 0111222223578999886532
Q ss_pred hcChHHHHHHHHHhhcCCEEEEEc
Q 015523 299 QKSRILKKLLKEQKVAGRIYGAVC 322 (405)
Q Consensus 299 ~~~~~l~~~l~~~~~~~k~i~aic 322 (405)
.....+++++...++.+|+.+.
T Consensus 66 --~~~~~~~l~~l~~~~ipvV~~~ 87 (288)
T cd01538 66 --GEALASAVEKAADAGIPVIAYD 87 (288)
T ss_pred --hhhHHHHHHHHHHCCCCEEEEC
Confidence 1122345555556677776663
No 445
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=25.53 E-value=1.4e+02 Score=26.61 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=30.7
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecC
Q 015523 18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVE 53 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~ 53 (405)
+|+.||+.||.+..++..+...++..|..+..++..
T Consensus 109 ~kvvillTDG~s~~~~~~~a~~lk~~gv~i~~VgvG 144 (224)
T cd01475 109 PRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVG 144 (224)
T ss_pred CeEEEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCC
Confidence 699999999988777878888899989888888763
No 446
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=25.42 E-value=61 Score=26.58 Aligned_cols=84 Identities=18% Similarity=0.089 Sum_probs=50.5
Q ss_pred HHHHHHhCCCeEEEEeecC--------CceeecCCC-cEEeeCCCccCc--CCCCccEEEEcCCccchHhhhcChHHHHH
Q 015523 239 IVDILRRAKVDVVVASVER--------STQIVASQG-VKIIADKSISDA--AESVYDLIILPGGVAGAERLQKSRILKKL 307 (405)
Q Consensus 239 ~~~~l~~~~~~v~~vs~~~--------~~~v~~~~g-~~v~~~~~l~~~--~~~~~D~livpgG~~~~~~~~~~~~l~~~ 307 (405)
....|.+++.+|.+++... +-.+....| ..+.+....... ....+|.|||.--. ...+.+++.
T Consensus 13 ~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa------~~~~~~l~~ 86 (151)
T PF02558_consen 13 YAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA------YQLEQALQS 86 (151)
T ss_dssp HHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG------GGHHHHHHH
T ss_pred HHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc------cchHHHHHH
Confidence 4456667899999998876 111222221 122222222211 23789999997521 244567788
Q ss_pred HHHHhhcCCEEEEEchHHHHH
Q 015523 308 LKEQKVAGRIYGAVCSSPIVL 328 (405)
Q Consensus 308 l~~~~~~~k~i~aic~g~~~L 328 (405)
|+........|+.+.+|.-..
T Consensus 87 l~~~~~~~t~iv~~qNG~g~~ 107 (151)
T PF02558_consen 87 LKPYLDPNTTIVSLQNGMGNE 107 (151)
T ss_dssp HCTGEETTEEEEEESSSSSHH
T ss_pred HhhccCCCcEEEEEeCCCCcH
Confidence 888888888999999986544
No 447
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=25.01 E-value=96 Score=25.37 Aligned_cols=48 Identities=6% Similarity=0.007 Sum_probs=0.0
Q ss_pred CCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHH--HcCCEEEEEccchH
Q 015523 73 SNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQA--EEKRLYGAICAAPA 123 (405)
Q Consensus 73 ~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~--~~~~~i~aic~g~~ 123 (405)
......+||.||+-++ ...-.-.+.+.+|+++.. -++++++.++.++.
T Consensus 37 ~~~~~~~yD~vi~gsp---iy~g~~~~~~~~fi~~~~~~l~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 37 DEPDLSDYDAVIFGSP---IYAGRIPGEMREFIKKNKDNLKNKKVALFSVGGS 86 (143)
T ss_pred cccccccCCEEEEEEE---EECCcCCHHHHHHHHHHHHHHcCCcEEEEEEeCC
No 448
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=24.92 E-value=3.3e+02 Score=25.88 Aligned_cols=38 Identities=16% Similarity=-0.090 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcc
Q 015523 99 EILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 136 (405)
Q Consensus 99 ~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~ 136 (405)
..+.+++++.+.+.+.+..+|..|..+=.-+.+|.+|.
T Consensus 39 ~~~~~~~~~~f~~~d~iIfI~A~GIaVR~IAP~l~dK~ 76 (315)
T PRK05788 39 EGFADAFEEAFGCYDALIFIMATGIAVRVIAPLLKDKW 76 (315)
T ss_pred CCHHHHHHHHHhcCCeEEEEEChHHHHHHhchhhhccC
Confidence 45788999999999999999998876656677887755
No 449
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=24.90 E-value=1e+02 Score=27.75 Aligned_cols=85 Identities=13% Similarity=0.053 Sum_probs=47.3
Q ss_pred EEEEEec---CCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523 19 NVLVPVG---FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 95 (405)
Q Consensus 19 ki~ill~---~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~ 95 (405)
+|++++. +.|...-+.++.+.+++.|+++.+...... +-.- . ..+..+-...+|++|+..+.
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~-~~~~-----~---~~l~~~~~~~vdgii~~~~~------ 65 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYDAGGD-DAKQ-----A---DQIDQAIAQKVDAIIIQHGR------ 65 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEECCCCC-HHHH-----H---HHHHHHHHcCCCEEEEecCC------
Confidence 4777775 334455566777888888999888654332 1000 0 01111111358999996541
Q ss_pred ccChHHHHHHHHHHHcCCEEEEEcc
Q 015523 96 RDCEILKKITSKQAEEKRLYGAICA 120 (405)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~i~aic~ 120 (405)
.....+.+++..+.+.|++.+..
T Consensus 66 --~~~~~~~i~~~~~~~ipvV~~~~ 88 (273)
T cd06305 66 --AEVLKPWVKRALDAGIPVVAFDV 88 (273)
T ss_pred --hhhhHHHHHHHHHcCCCEEEecC
Confidence 11233445666667788776643
No 450
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=24.57 E-value=1.4e+02 Score=23.44 Aligned_cols=75 Identities=23% Similarity=0.254 Sum_probs=44.1
Q ss_pred EEEEeCC-CCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcC
Q 015523 223 VLIPIAN-GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKS 301 (405)
Q Consensus 223 V~il~~~-g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~ 301 (405)
|.+...+ ..+...+..+...|+..||++......- .++...+.+...++|++.+-... ......-
T Consensus 2 vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~------------~~~~l~~~~~~~~pdvV~iS~~~--~~~~~~~ 67 (119)
T cd02067 2 VVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDV------------PPEEIVEAAKEEDADAIGLSGLL--TTHMTLM 67 (119)
T ss_pred EEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCC------------CHHHHHHHHHHcCCCEEEEeccc--cccHHHH
Confidence 3333333 5688888899999999999996665332 12222233334678988886642 2223333
Q ss_pred hHHHHHHHHH
Q 015523 302 RILKKLLKEQ 311 (405)
Q Consensus 302 ~~l~~~l~~~ 311 (405)
.++++.+++.
T Consensus 68 ~~~i~~l~~~ 77 (119)
T cd02067 68 KEVIEELKEA 77 (119)
T ss_pred HHHHHHHHHc
Confidence 4555555554
No 451
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=24.55 E-value=5.4e+02 Score=23.40 Aligned_cols=81 Identities=12% Similarity=0.097 Sum_probs=50.9
Q ss_pred CcEEEEEecCCCch--hhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523 17 ALNVLVPVGFGTEE--MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 94 (405)
Q Consensus 17 ~~ki~ill~~g~~~--~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~ 94 (405)
..|||.+.+-|... ..+.-+.+.|..-.-+.+++-. ++ ..|. ...+ +.|+.+|=|+-
T Consensus 3 ~ikva~~~L~gC~GC~~slldl~E~L~dll~~~div~~----~~--------l~D~--keiP--EvDValVEGsV----- 61 (247)
T COG1941 3 KIKVATVWLTGCSGCHMSLLDLYEKLLDLLEDADIVYC----PT--------LVDE--KEIP--EVDVALVEGSV----- 61 (247)
T ss_pred ceEEEEEEeccccchHHHHHhHHHHHHHhhhhhcEEEe----ec--------cccc--ccCC--cccEEEEeccc-----
Confidence 45899999888774 3344445555443222232211 11 1111 1344 48999999982
Q ss_pred cccChHHHHHHHHHHHcCCEEEEEcc
Q 015523 95 LRDCEILKKITSKQAEEKRLYGAICA 120 (405)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~i~aic~ 120 (405)
.+++-++.+++..++.+.++|+++
T Consensus 62 --~~ee~lE~v~ElRekakivVA~Gs 85 (247)
T COG1941 62 --CDEEELELVKELREKAKIVVALGS 85 (247)
T ss_pred --CcHHHHHHHHHHHHhCcEEEEEec
Confidence 267788899999999999999966
No 452
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=24.39 E-value=1.6e+02 Score=29.36 Aligned_cols=111 Identities=15% Similarity=0.160 Sum_probs=53.8
Q ss_pred CCCCcEEEEEecCCCchhhHHHHHHHHHhc-----CCEEEEEecCCCceeEeccC-cEEe-cCcccCCCCCCcccEEEEc
Q 015523 14 PSFALNVLVPVGFGTEEMEAVIIVDVLRRA-----GAQVTMASVEPQLEVEASSG-TRLV-ADTSISNCSHQVFDLIALP 86 (405)
Q Consensus 14 ~~~~~ki~ill~~g~~~~e~~~~~~~l~~~-----~~~v~~vs~~~~~~v~~~~g-~~v~-~~~~~~~~~~~~~d~liip 86 (405)
|..|++|||+..+ .-+.+.|+++.. ..++.+... .|++.+- ..|. .=..+... .++|+|||.
T Consensus 132 P~~p~~IGVITS~-----tgAairDIl~~~~rR~P~~~viv~pt----~VQG~~A~~eIv~aI~~an~~--~~~DvlIVa 200 (440)
T COG1570 132 PFFPKKIGVITSP-----TGAALRDILHTLSRRFPSVEVIVYPT----LVQGEGAAEEIVEAIERANQR--GDVDVLIVA 200 (440)
T ss_pred CCCCCeEEEEcCC-----chHHHHHHHHHHHhhCCCCeEEEEec----cccCCCcHHHHHHHHHHhhcc--CCCCEEEEe
Confidence 5578899999876 224455555432 355555432 1222111 1111 00111222 259999998
Q ss_pred -CCchhhhcccc-ChHHHHHHHHHHHcCCEEE-EEccchHHhhhhcCCCCCcceeec
Q 015523 87 -GGMPGSVRLRD-CEILKKITSKQAEEKRLYG-AICAAPAVTLLPWGLLRRKQITCH 140 (405)
Q Consensus 87 -gg~~~~~~~~~-~~~~~~~l~~~~~~~~~i~-aic~g~~~~La~agll~g~~~t~~ 140 (405)
|| ...++++. |++. ..|..+....||+ |+++-.-+.|+ .+..+.++.|+
T Consensus 201 RGG-GSiEDLW~FNdE~--vaRAi~~s~iPvISAVGHEtD~tL~--DfVAD~RApTP 252 (440)
T COG1570 201 RGG-GSIEDLWAFNDEI--VARAIAASRIPVISAVGHETDFTLA--DFVADLRAPTP 252 (440)
T ss_pred cCc-chHHHHhccChHH--HHHHHHhCCCCeEeecccCCCccHH--HhhhhccCCCc
Confidence 44 34455442 3322 2456666677755 45664444333 23334455444
No 453
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=24.18 E-value=2.8e+02 Score=26.25 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=50.1
Q ss_pred CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEe---------------eCCCccCcCCCCc
Q 015523 219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKII---------------ADKSISDAAESVY 283 (405)
Q Consensus 219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~---------------~~~~l~~~~~~~~ 283 (405)
+|+||+|+ |.-..-.. ....|.++|++|.++..+.........|+.+. .....+.. .++
T Consensus 1 ~~mkI~Ii---G~G~mG~~-~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 74 (341)
T PRK08229 1 MMARICVL---GAGSIGCY-LGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAAL--ATA 74 (341)
T ss_pred CCceEEEE---CCCHHHHH-HHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhc--cCC
Confidence 35678877 44333322 33445667888888776431000011233221 11122222 578
Q ss_pred cEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHH
Q 015523 284 DLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 326 (405)
Q Consensus 284 D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~ 326 (405)
|++++.-... ....+.+.|......+..|+.+.+|..
T Consensus 75 D~vil~vk~~------~~~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 75 DLVLVTVKSA------ATADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred CEEEEEecCc------chHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 9888865321 123455666666667777777766643
No 454
>PRK06242 flavodoxin; Provisional
Probab=23.72 E-value=1.3e+02 Score=24.55 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=28.6
Q ss_pred CcccEEEEcCCchhhhccccChHHHHHHHHHHH-cCCEEEEEccchH
Q 015523 78 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAE-EKRLYGAICAAPA 123 (405)
Q Consensus 78 ~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~-~~~~i~aic~g~~ 123 (405)
.+||.|++-.- .....-.+.+.+||.+... ++|+++.+|++++
T Consensus 42 ~~~d~ii~g~p---vy~~~~~~~~~~fl~~~~~~~~k~~~~f~t~g~ 85 (150)
T PRK06242 42 SEYDLIGFGSG---IYFGKFHKSLLKLIEKLPPVSGKKAFIFSTSGL 85 (150)
T ss_pred hHCCEEEEeCc---hhcCCcCHHHHHHHHhhhhhcCCeEEEEECCCC
Confidence 37998888553 1112235678888876544 6899999888654
No 455
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=23.71 E-value=1.1e+02 Score=25.48 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=26.0
Q ss_pred CCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEcc
Q 015523 77 HQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICA 120 (405)
Q Consensus 77 ~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~ 120 (405)
+.+.|+++|-|.. .. +..+.++-++++..+.|++.|+++
T Consensus 55 Pr~aDvllVtG~v--t~---~~~~~l~~~~e~~p~pk~VIA~Gs 93 (145)
T TIGR01957 55 PRQADVMIVAGTV--TK---KMAPALRRLYDQMPEPKWVISMGA 93 (145)
T ss_pred CCcceEEEEecCC--cH---HHHHHHHHHHHhccCCceEEEecc
Confidence 3569999999973 11 123444445556677999999855
No 456
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=23.55 E-value=6.2e+02 Score=24.28 Aligned_cols=90 Identities=9% Similarity=0.004 Sum_probs=55.2
Q ss_pred CCcEEEEEecCCCchhhHHHHHHHHHh---cCCEEEEEecCC--CceeEecc-CcEEecCcccCCCCCCcccEEEEcCCc
Q 015523 16 FALNVLVPVGFGTEEMEAVIIVDVLRR---AGAQVTMASVEP--QLEVEASS-GTRLVADTSISNCSHQVFDLIALPGGM 89 (405)
Q Consensus 16 ~~~ki~ill~~g~~~~e~~~~~~~l~~---~~~~v~~vs~~~--~~~v~~~~-g~~v~~~~~~~~~~~~~~d~liipgg~ 89 (405)
+.+||+|+--.|+...|+.- .|.. ..+++..++.+. |+++.-.. .+.+. .++.....+.|++++..+.
T Consensus 3 ~~~~vaIvGATG~vG~ellr---lL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~---~~~~~~~~~~Dvvf~a~p~ 76 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLE---LLAERQFPVGELYALASEESAGETLRFGGKSVTVQ---DAAEFDWSQAQLAFFVAGR 76 (336)
T ss_pred CCCEEEEEccCCHHHHHHHH---HHhcCCCCceEEEEEEccCcCCceEEECCcceEEE---eCchhhccCCCEEEECCCH
Confidence 45799999999999999854 4544 467777776542 32444211 23333 2222221368999987762
Q ss_pred hhhhccccChHHHHHHHHHHHcCCEEEEEcc
Q 015523 90 PGSVRLRDCEILKKITSKQAEEKRLYGAICA 120 (405)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~ 120 (405)
+...+|..++.++|..|+-...
T Consensus 77 ---------~~s~~~~~~~~~~g~~VIDlS~ 98 (336)
T PRK08040 77 ---------EASAAYAEEATNAGCLVIDSSG 98 (336)
T ss_pred ---------HHHHHHHHHHHHCCCEEEECCh
Confidence 2455677777777777665544
No 457
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=23.54 E-value=1.5e+02 Score=26.56 Aligned_cols=39 Identities=26% Similarity=0.105 Sum_probs=29.4
Q ss_pred CCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEch
Q 015523 280 ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCS 323 (405)
Q Consensus 280 ~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~ 323 (405)
|.+.|+++|-|... .+..+.++.+.++..+-|+|+|+++
T Consensus 69 PRhADvliVtG~VT-----~km~~~L~rlyeqmPePK~VIA~Ga 107 (225)
T CHL00023 69 PRQADLILTAGTVT-----MKMAPSLVRLYEQMPEPKYVIAMGA 107 (225)
T ss_pred cccceEEEEecCCc-----cccHHHHHHHHHhcCCCCeEEEEcc
Confidence 46789999998641 2445667777778899999998854
No 458
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=23.54 E-value=54 Score=31.34 Aligned_cols=66 Identities=12% Similarity=0.258 Sum_probs=50.4
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEE
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIIL 288 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~liv 288 (405)
|.||++|--||.-+.=+.....+|...++.+++....-|.......|- ..|+.+++.+ ..+|+++.
T Consensus 1 m~~I~vipGDGIGpEv~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~G~-~lp~~~l~~~--~~~da~l~ 66 (330)
T PRK14025 1 MHKICVIEGDGIGKEVVPAALHVLEATGLPFEFVYAEAGDEVFEKTGK-ALPEETIEAA--KEADAVLF 66 (330)
T ss_pred CeEEEEECCCcccHHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHhCC-CCCHHHHHHH--HHCCEEEE
Confidence 578999999999998889999999988877777666543233344453 4567788888 78999998
No 459
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=23.41 E-value=1.5e+02 Score=28.14 Aligned_cols=86 Identities=15% Similarity=0.129 Sum_probs=52.1
Q ss_pred CcCEEEEEeCC---CCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch
Q 015523 219 RMPRVLIPIAN---GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 295 (405)
Q Consensus 219 ~~~~V~il~~~---g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~ 295 (405)
+..+|++++.+ .|...-+.++.+.+.+.||.+.+...... +-. ....++.+....+|++|+.+..
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~-~~~--------~~~~i~~l~~~~vDGiIi~~~~--- 91 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGN-EET--------QMSQIENMINRGVDVLVIIPYN--- 91 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCCC-HHH--------HHHHHHHHHHcCCCEEEEeCCC---
Confidence 35899999964 46667777888888899999998866543 100 0111222223578999886532
Q ss_pred HhhhcChHHHHHHHHHhhcCCEEEEE
Q 015523 296 ERLQKSRILKKLLKEQKVAGRIYGAV 321 (405)
Q Consensus 296 ~~~~~~~~l~~~l~~~~~~~k~i~ai 321 (405)
.....++++.+...+-|++.+
T Consensus 92 -----~~~~~~~l~~~~~~~iPvV~i 112 (330)
T PRK10355 92 -----GQVLSNVIKEAKQEGIKVLAY 112 (330)
T ss_pred -----hhhHHHHHHHHHHCCCeEEEE
Confidence 111234455555666666665
No 460
>PRK13059 putative lipid kinase; Reviewed
Probab=23.13 E-value=3.3e+02 Score=25.42 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=50.3
Q ss_pred cCEEEEEeCCC--Cc--HHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch
Q 015523 220 MPRVLIPIANG--SE--EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 295 (405)
Q Consensus 220 ~~~V~il~~~g--~~--~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~ 295 (405)
|+|+.+|+-+. -. ..++..+.+.|.+.++++.+...+.. . .. ....+.. ...+|.|++.||-
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~-~-----~~----~~~~~~~-~~~~d~vi~~GGD--- 66 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRISLE-Y-----DL----KNAFKDI-DESYKYILIAGGD--- 66 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEccCc-c-----hH----HHHHHHh-hcCCCEEEEECCc---
Confidence 35777666542 21 24455677888899998776655432 1 00 0011111 2457999999984
Q ss_pred HhhhcChHHHHHHHHHhhc--CCEEEEEchHHH--HHHHcCC
Q 015523 296 ERLQKSRILKKLLKEQKVA--GRIYGAVCSSPI--VLHKHGL 333 (405)
Q Consensus 296 ~~~~~~~~l~~~l~~~~~~--~k~i~aic~g~~--~La~aGl 333 (405)
..+.+.++...+. .-+++-+=.|+. +.-..|+
T Consensus 67 ------GTv~evv~gl~~~~~~~~lgviP~GTgNdfAr~lgi 102 (295)
T PRK13059 67 ------GTVDNVVNAMKKLNIDLPIGILPVGTANDFAKFLGM 102 (295)
T ss_pred ------cHHHHHHHHHHhcCCCCcEEEECCCCHhHHHHHhCC
Confidence 2444444554433 345665544444 4444455
No 461
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=22.97 E-value=2.1e+02 Score=26.11 Aligned_cols=47 Identities=15% Similarity=0.272 Sum_probs=36.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEE
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKI 269 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v 269 (405)
|||.|--=||+...-+..+++.|.+.+ +|.+++|..+ .--+++.+++
T Consensus 1 M~ILltNDDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~-~Sg~g~ait~ 47 (244)
T TIGR00087 1 MKILLTNDDGIHSPGIRALYQALKELG-EVTVVAPARQ-RSGTGHSLTL 47 (244)
T ss_pred CeEEEECCCCCCCHhHHHHHHHHHhCC-CEEEEeCCCC-ccccccCcCC
Confidence 477777778999999999999999987 9999999986 3333333443
No 462
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=22.83 E-value=2.3e+02 Score=29.89 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch---HhhhcChHHHHHH
Q 015523 232 EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA---ERLQKSRILKKLL 308 (405)
Q Consensus 232 ~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~---~~~~~~~~l~~~l 308 (405)
.-.+..++++.|.-+.++|+++|=+.= ..+ . -+++.|+||=.|.-.-+ -....++.+...|
T Consensus 466 q~ysy~GvlE~LSG~p~dV~FisFdDi-----------~~~----g-i~~didViIN~G~a~ta~SGG~~W~d~~~~~aL 529 (719)
T TIGR02336 466 QTYSYYGILECLSGMPVEVEFISFDDI-----------LEH----G-IDSDIDVIINGGDADTAWSGGDVWTNPKLVETV 529 (719)
T ss_pred hhhhHHHHHHHhcCCCeeEEEecHHHH-----------hhc----C-CCcCCcEEEecCcccccccCccccCCHHHHHHH
Confidence 344556666777666677777766541 001 1 13567988877632111 1246799999999
Q ss_pred HHHhhcCCEEEEEchHHHH
Q 015523 309 KEQKVAGRIYGAVCSSPIV 327 (405)
Q Consensus 309 ~~~~~~~k~i~aic~g~~~ 327 (405)
+++..+|.-+++++.-...
T Consensus 530 r~fV~~GGglIGVgDpsa~ 548 (719)
T TIGR02336 530 RAWVRGGGGFVGVGEPSAA 548 (719)
T ss_pred HHHHHcCCeEEEEECCccC
Confidence 9999999988888876543
No 463
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=22.73 E-value=1e+02 Score=27.63 Aligned_cols=105 Identities=5% Similarity=-0.058 Sum_probs=55.8
Q ss_pred CCCCcEEEEEecC----CCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecC-cccCCCCCCcccEEEEcCC
Q 015523 14 PSFALNVLVPVGF----GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVAD-TSISNCSHQVFDLIALPGG 88 (405)
Q Consensus 14 ~~~~~ki~ill~~----g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~-~~~~~~~~~~~d~liipgg 88 (405)
+.+++||+++... .++..-+..+.+.+...+++++++....= |......-. .|. ..+.+. ....|++++..=
T Consensus 23 ~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~l-Pl~~~d~~~-~p~v~~l~~~-v~~ADgvii~TP 99 (219)
T TIGR02690 23 KPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGL-PLPDAAHAD-HPKVRELRQL-SEWSEGQVWCSP 99 (219)
T ss_pred CCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccC-CCCCcCccc-CHHHHHHHHH-HHhCCEEEEeCC
Confidence 3456789998854 46666777777777777999999986432 332211110 010 001110 124788888532
Q ss_pred chhhhccccChHHHHHHHHHH-----HcCCEEEEEccc
Q 015523 89 MPGSVRLRDCEILKKITSKQA-----EEKRLYGAICAA 121 (405)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~-----~~~~~i~aic~g 121 (405)
..+.....--+..++|+.+-+ -.+|+++.++.+
T Consensus 100 EYn~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaS 137 (219)
T TIGR02690 100 ERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVS 137 (219)
T ss_pred ccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeC
Confidence 111111111245677776532 257888876653
No 464
>PRK13059 putative lipid kinase; Reviewed
Probab=22.69 E-value=3.2e+02 Score=25.46 Aligned_cols=84 Identities=11% Similarity=0.121 Sum_probs=46.6
Q ss_pred CcEEEEEecCCCc----hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh
Q 015523 17 ALNVLVPVGFGTE----EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 92 (405)
Q Consensus 17 ~~ki~ill~~g~~----~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~ 92 (405)
|+|+.|++.|..- ..++..+.+.|++.++++.+...... . .... ..+... ..+|.|++.|| .+
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~-~-----~~~~----~~~~~~-~~~d~vi~~GG-DG- 67 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRISLE-Y-----DLKN----AFKDID-ESYKYILIAGG-DG- 67 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEccCc-c-----hHHH----HHHHhh-cCCCEEEEECC-cc-
Confidence 3578888877432 23445677888899998776654432 1 0101 111112 35899999999 32
Q ss_pred hccccChHHHHHHHHHHHc--CCEEEEEcc
Q 015523 93 VRLRDCEILKKITSKQAEE--KRLYGAICA 120 (405)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~--~~~i~aic~ 120 (405)
.+.+.+...... ..+++-+=.
T Consensus 68 -------Tv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 68 -------TVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred -------HHHHHHHHHHhcCCCCcEEEECC
Confidence 333334444433 356666643
No 465
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=22.65 E-value=6e+02 Score=24.54 Aligned_cols=92 Identities=17% Similarity=0.080 Sum_probs=48.1
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCccc---EEEEcCCchhhhc
Q 015523 18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFD---LIALPGGMPGSVR 94 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d---~liipgg~~~~~~ 94 (405)
+|+.|+.-++....-...+.+.|+..++++..+...++.+-.+.... +..++......+| .+|-.|| ...
T Consensus 24 ~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v----~~~~~~~~~~~~dr~~~IIAvGG-Gsv-- 96 (355)
T cd08197 24 DKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTL----SDLVERALALGATRRSVIVALGG-GVV-- 96 (355)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHH----HHHHHHHHHcCCCCCcEEEEECC-cHH--
Confidence 57776665555555445567888888887665443332111110000 0000111112344 7887776 222
Q ss_pred cccChHHHHHHHHHHHcCCEEEEEcc
Q 015523 95 LRDCEILKKITSKQAEEKRLYGAICA 120 (405)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~i~aic~ 120 (405)
-++-+++...+.++.+++.+.+
T Consensus 97 ----~D~ak~~A~~~~rgip~I~IPT 118 (355)
T cd08197 97 ----GNIAGLLAALLFRGIRLVHIPT 118 (355)
T ss_pred ----HHHHHHHHHHhccCCCEEEecC
Confidence 2344555555667899999998
No 466
>PRK03673 hypothetical protein; Provisional
Probab=22.64 E-value=3e+02 Score=27.16 Aligned_cols=84 Identities=14% Similarity=0.164 Sum_probs=50.1
Q ss_pred cCEEEEEeC-----CC-CcHHHHHHHHHHHHhCCCeEEEEeecCCc--eeecCCCcEEeeCCCccCcCCCCccEEEEcCC
Q 015523 220 MPRVLIPIA-----NG-SEEIEIVTIVDILRRAKVDVVVASVERST--QIVASQGVKIIADKSISDAAESVYDLIILPGG 291 (405)
Q Consensus 220 ~~~V~il~~-----~g-~~~~e~~~~~~~l~~~~~~v~~vs~~~~~--~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG 291 (405)
|+|+.|+.. .| ..+.-...+...|...|+++...+.-+.. .+.. .+... ...+|+||+.||
T Consensus 1 ~~~v~Iis~GdEll~G~i~dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~----------~l~~a-~~~~DlVI~tGG 69 (396)
T PRK03673 1 MLRVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVA----------ILRER-SQHADVLIVNGG 69 (396)
T ss_pred CCEEEEEEecccCCCCeEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHH----------HHHHH-hccCCEEEEcCC
Confidence 456666642 22 23444556677788888887666544320 0110 11111 256899999999
Q ss_pred ccchHh--------------hhcChHHHHHHHHHhhc
Q 015523 292 VAGAER--------------LQKSRILKKLLKEQKVA 314 (405)
Q Consensus 292 ~~~~~~--------------~~~~~~l~~~l~~~~~~ 314 (405)
.+.... +..+++..++|++++++
T Consensus 70 lGpt~dD~t~~avA~a~g~~L~~d~e~~~~i~~~f~~ 106 (396)
T PRK03673 70 LGPTSDDLSALAAATAAGEGLVLHEEWLAEMERFFAE 106 (396)
T ss_pred CCCCCcccHHHHHHHHcCCCceeCHHHHHHHHHHHHh
Confidence 853321 34688999999988754
No 467
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=22.38 E-value=2.5e+02 Score=23.61 Aligned_cols=38 Identities=26% Similarity=0.299 Sum_probs=32.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCC--CeEEEEeecCC
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAK--VDVVVASVERS 258 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~--~~v~~vs~~~~ 258 (405)
++|+|+.-...+..-.-...+.|.+.| |+++++|.+.-
T Consensus 3 ~~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRT 42 (162)
T COG0041 3 PKVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRT 42 (162)
T ss_pred ceEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCC
Confidence 489999988888878888999999988 88999998873
No 468
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=22.31 E-value=5.5e+02 Score=24.38 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=27.9
Q ss_pred cCEEEEEeCCCCcHHHHH-----HHHHHHHhCCCeEEEEeecC
Q 015523 220 MPRVLIPIANGSEEIEIV-----TIVDILRRAKVDVVVASVER 257 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~-----~~~~~l~~~~~~v~~vs~~~ 257 (405)
++||+||.--...+.|++ .+.+.|.+.+|++..+-.+.
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~ 45 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITK 45 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECC
Confidence 578999885544444444 67788888899998887765
No 469
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=22.16 E-value=4e+02 Score=25.92 Aligned_cols=97 Identities=12% Similarity=0.038 Sum_probs=56.9
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCE-EEEEecCCCceeEec-cCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQ-VTMASVEPQLEVEAS-SGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 94 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~-v~~vs~~~~~~v~~~-~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~ 94 (405)
+.+++++..+..+.+|+..+.+.++.-|.. ++.-........... .+. -....+++++. +.|++++.|. ++.
T Consensus 87 ~~~i~~i~g~~~t~E~~~~lkkl~~~lgs~n~d~~~~~~~~~~~~~~~~~-~~~~~sl~die--~ad~illiG~--n~~- 160 (366)
T cd02774 87 FSKLNFIIGSKIDLETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLDLEN-YLFNNSLKNLD--KSDLCLLIGS--NLR- 160 (366)
T ss_pred cccEEEEECCCCCHHHHHHHHHHHHHhCCCceeccccccccccccccccC-CccCCCHHHHh--hCCEEEEEcC--Ccc-
Confidence 457999999999999988888887754321 211111000001000 011 11234566665 6899999996 222
Q ss_pred cccChHHHHHHHHHHHc-CCEEEEEcc
Q 015523 95 LRDCEILKKITSKQAEE-KRLYGAICA 120 (405)
Q Consensus 95 ~~~~~~~~~~l~~~~~~-~~~i~aic~ 120 (405)
.+.+-+-..||+.+.+ +..|..+..
T Consensus 161 -~e~Pvl~~rlrka~~~~~~ki~vi~~ 186 (366)
T cd02774 161 -VESPILNIRLRNRYNKGNKKIFVIGN 186 (366)
T ss_pred -hhhHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3456777888888855 567776644
No 470
>PRK07116 flavodoxin; Provisional
Probab=21.94 E-value=2.6e+02 Score=23.25 Aligned_cols=40 Identities=10% Similarity=-0.040 Sum_probs=26.7
Q ss_pred CcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEcc
Q 015523 78 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICA 120 (405)
Q Consensus 78 ~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~ 120 (405)
..||.|++-.- .......+.+..||.+..-.+++++.+|+
T Consensus 75 ~~~D~Iiig~P---v~~~~~p~~v~~fl~~~~l~~k~v~~f~T 114 (160)
T PRK07116 75 AEYDVIFLGFP---IWWYVAPRIINTFLESYDFSGKTVIPFAT 114 (160)
T ss_pred HhCCEEEEECC---hhccccHHHHHHHHHhcCCCCCEEEEEEe
Confidence 36899887542 22223346788898876666788888876
No 471
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=21.87 E-value=3.5e+02 Score=27.48 Aligned_cols=63 Identities=21% Similarity=0.183 Sum_probs=36.2
Q ss_pred CCcEEEEEecCCCc---hhhH-H-HHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCC
Q 015523 16 FALNVLVPVGFGTE---EMEA-V-IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG 88 (405)
Q Consensus 16 ~~~ki~ill~~g~~---~~e~-~-~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg 88 (405)
+++|+.|++.|..- .... . .+...|++++++++++-...... ...+.. +.....||.||+.||
T Consensus 110 ~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~gh-----A~~la~-----~~~~~~~D~VV~vGG 177 (481)
T PLN02958 110 RPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLH-----AKEVVR-----TMDLSKYDGIVCVSG 177 (481)
T ss_pred CCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccH-----HHHHHH-----HhhhcCCCEEEEEcC
Confidence 57899999877322 2222 2 34558888898887764443201 111111 111236999999999
No 472
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.84 E-value=5.1e+02 Score=24.00 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=42.2
Q ss_pred cEEEEEecCCCc-hhh-HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523 18 LNVLVPVGFGTE-EME-AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 95 (405)
Q Consensus 18 ~ki~ill~~g~~-~~e-~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~ 95 (405)
|||+|+..++-. ..+ +..+.++| +.++++.+-..... ... ..+ ....+. +.|++++.|| .
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~-~~~-~~~------~~~~~~---~~D~vi~lGG-D----- 62 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAK-ALG-MDG------LDIEEI---NADVIITIGG-D----- 62 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhh-hcC-ccc------Cccccc---CCCEEEEEcC-c-----
Confidence 578998776543 222 33455556 45776665433221 111 000 011222 5799999999 2
Q ss_pred ccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 96 RDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
..+++..+. -..||.++-.|
T Consensus 63 ---GT~L~a~~~---~~~PilGIN~G 82 (271)
T PRK01185 63 ---GTILRTLQR---AKGPILGINMG 82 (271)
T ss_pred ---HHHHHHHHH---cCCCEEEEECC
Confidence 334443433 34599988774
No 473
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=21.82 E-value=4.7e+02 Score=23.33 Aligned_cols=85 Identities=14% Similarity=0.189 Sum_probs=47.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 300 (405)
Q Consensus 221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~ 300 (405)
..|.-+-+||.. ..+...|++.||+|++.+.+. ++..|.+....+||+|+.-+-. ....+
T Consensus 14 ~~~~~~~~~~~~----~~~~~~L~~~gf~V~~~~~~d-------------~~~~~~~~~L~~~D~lV~~~~~-~~~~l-- 73 (215)
T cd03142 14 EAVAALYPDGMH----GTIAAALAEYGFDVQTATLDE-------------PEHGLTEEVLAETDVLLWWGHI-AHDEV-- 73 (215)
T ss_pred hhhHhhCcchHH----HHHHHHHHhcCcEEEEEeccC-------------ccccCCHhHHhcCCEEEEeCCC-CcCcC--
Confidence 344444444543 346678888999999775553 2233444344789999973321 11121
Q ss_pred ChHHHHHHHHHhhcCCEEEEEchHH
Q 015523 301 SRILKKLLKEQKVAGRIYGAVCSSP 325 (405)
Q Consensus 301 ~~~l~~~l~~~~~~~k~i~aic~g~ 325 (405)
+++..+-+.++.++|.=++++=.|.
T Consensus 74 ~~eq~~~l~~~V~~GgGlv~lHsg~ 98 (215)
T cd03142 74 KDEIVERVHRRVLDGMGLIVLHSGH 98 (215)
T ss_pred CHHHHHHHHHHHHcCCCEEEECCCc
Confidence 3445555566676776565554433
No 474
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=21.62 E-value=2.6e+02 Score=23.14 Aligned_cols=38 Identities=24% Similarity=0.216 Sum_probs=29.6
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCC
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEP 54 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~ 54 (405)
..|+.|++.||....+.......+++.+..+..++...
T Consensus 103 ~~~~iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g~ 140 (164)
T cd01472 103 VPKVLVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKN 140 (164)
T ss_pred CCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEECCc
Confidence 46899999999877676666777888888888887654
No 475
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.56 E-value=1.1e+02 Score=27.69 Aligned_cols=85 Identities=4% Similarity=-0.132 Sum_probs=48.1
Q ss_pred EEEEEecC---CCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523 19 NVLVPVGF---GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 95 (405)
Q Consensus 19 ki~ill~~---g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~ 95 (405)
||++++.+ .|...-+..+.+.+++.|+++.+...... +-. ....++.+.....|++|+.+..
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~-~~~--------~~~~i~~~~~~~~Dgiii~~~~------ 65 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGYELISTDAQGD-LTK--------QIADVEDLLTRGVNVLIINPVD------ 65 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCCEEEEEcCCCC-HHH--------HHHHHHHHHHcCCCEEEEecCC------
Confidence 57777743 34455566777788888998877654332 100 0001112222358999985431
Q ss_pred ccChHHHHHHHHHHHcCCEEEEEcc
Q 015523 96 RDCEILKKITSKQAEEKRLYGAICA 120 (405)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~i~aic~ 120 (405)
.+.+.+.++++.+.+.|++.+..
T Consensus 66 --~~~~~~~i~~~~~~~iPvV~~~~ 88 (282)
T cd06318 66 --PEGLVPAVAAAKAAGVPVVVVDS 88 (282)
T ss_pred --ccchHHHHHHHHHCCCCEEEecC
Confidence 12233456666677889887754
No 476
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=21.54 E-value=4.9e+02 Score=21.89 Aligned_cols=37 Identities=24% Similarity=0.190 Sum_probs=29.3
Q ss_pred cccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccc
Q 015523 79 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 121 (405)
Q Consensus 79 ~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g 121 (405)
+-|++|+.... ...+.+.+.++.+.++|.++.+++.-
T Consensus 72 ~~Dv~I~iS~s------G~t~~~i~~~~~ak~~g~~ii~IT~~ 108 (179)
T TIGR03127 72 KGDLLIAISGS------GETESLVTVAKKAKEIGATVAAITTN 108 (179)
T ss_pred CCCEEEEEeCC------CCcHHHHHHHHHHHHCCCeEEEEECC
Confidence 46888887641 24578899999999999999999873
No 477
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=21.54 E-value=2.1e+02 Score=23.81 Aligned_cols=37 Identities=27% Similarity=0.490 Sum_probs=30.5
Q ss_pred cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeec
Q 015523 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVE 256 (405)
Q Consensus 220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~ 256 (405)
.+++.|++.||....++....+.++..|+.+..++..
T Consensus 103 ~~k~iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g 139 (164)
T cd01482 103 VPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVK 139 (164)
T ss_pred CCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence 4789999999987667777788899999988888764
No 478
>PRK09004 FMN-binding protein MioC; Provisional
Probab=21.45 E-value=4.3e+02 Score=21.69 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=20.9
Q ss_pred cCEEEEEeCC--CCcHHHHHHHHHHHHhCCCeEEEE
Q 015523 220 MPRVLIPIAN--GSEEIEIVTIVDILRRAKVDVVVA 253 (405)
Q Consensus 220 ~~~V~il~~~--g~~~~e~~~~~~~l~~~~~~v~~v 253 (405)
|.+|.|+-.. |....=.-.+.+.+.+.|++++++
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~ 36 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEEAGFSTETL 36 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEe
Confidence 4567777554 334333344557777788888765
No 479
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=21.43 E-value=1.9e+02 Score=26.26 Aligned_cols=94 Identities=10% Similarity=0.048 Sum_probs=50.5
Q ss_pred EEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChH
Q 015523 21 LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEI 100 (405)
Q Consensus 21 ~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~ 100 (405)
=||+++.=....+...++.|++.+..--+- .... .. ....+.+.. -.+--+-+|.|. ......-.+
T Consensus 93 rfLi~~~P~~~~~~~yl~eLk~~gV~~lVr-lcE~-~Y---------d~~~~~~~G-I~~~~lpipDg~--aPs~~~i~~ 158 (241)
T PTZ00393 93 KILILDAPTNDLLPLYIKEMKNYNVTDLVR-TCER-TY---------NDGEITSAG-INVHELIFPDGD--APTVDIVSN 158 (241)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHcCCCEEEE-CCCC-CC---------CHHHHHHcC-CeEEEeecCCCC--CCCHHHHHH
Confidence 345555555556667778888887643332 1111 00 001111111 123335566552 111222356
Q ss_pred HHHHHHHHHHcCCEEEEEccchHHhhhhcCC
Q 015523 101 LKKITSKQAEEKRLYGAICAAPAVTLLPWGL 131 (405)
Q Consensus 101 ~~~~l~~~~~~~~~i~aic~g~~~~La~agl 131 (405)
+.+++.++...++.|+.-|.|| +.++|.
T Consensus 159 ~l~~i~~~l~~g~~VaVHC~AG---lGRTGt 186 (241)
T PTZ00393 159 WLTIVNNVIKNNRAVAVHCVAG---LGRAPV 186 (241)
T ss_pred HHHHHHHHHhcCCeEEEECCCC---CCHHHH
Confidence 7778887888999999999986 455553
No 480
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=21.09 E-value=56 Score=31.72 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=62.4
Q ss_pred cCcEEecCcccCCCCCCcccEEEEcCCchhhhc--cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc--CC-CCCcc
Q 015523 62 SGTRLVADTSISNCSHQVFDLIALPGGMPGSVR--LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW--GL-LRRKQ 136 (405)
Q Consensus 62 ~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~--~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a--gl-l~g~~ 136 (405)
.|+.+++...-..+ ..+-||.++|+-++. +.....+++++...-++.-.|+.||.||.-++... |+ |+..+
T Consensus 65 ~GvVVt~~g~~~~~----~~ieViea~HPvPDe~s~~asrrlL~~v~~l~e~D~Vi~LISGGGSaL~e~P~eGitL~d~~ 140 (422)
T COG2379 65 AGVVVTPYGYGGPC----PRIEVIEAGHPVPDEASLKASRRLLELVSGLTEDDLVIVLISGGGSALLELPAEGITLEDLI 140 (422)
T ss_pred CceEeccCccCCCC----CceeEEeCCCCCCCchhHHHHHHHHHHhcCCCCCcEEEEEEeCCchhhccCCccCCCHHHHH
Confidence 44555555544444 367788888754432 33456777777777677888999999887444432 32 22222
Q ss_pred eeeccCccccCCCCccccCcEEEeCCeEcCCCcccHHHHHHHHHHHhcChHHHHHH
Q 015523 137 ITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEI 192 (405)
Q Consensus 137 ~t~~~~~~~~l~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~ 192 (405)
.++.-++.|+.+-+.+.....=+.+..|-++|+.+
T Consensus 141 ---------------------avn~~LL~sGA~I~emNtVRkhLS~VKGGrLA~a~ 175 (422)
T COG2379 141 ---------------------AVNRALLKSGAPISEMNTVRKHLSRVKGGRLAAAA 175 (422)
T ss_pred ---------------------HHHHHHHHcCCChHHHHHHHHHHhhccchHHHHhc
Confidence 22333555666666666666666666666666555
No 481
>TIGR02922 conserved hypothetical protein TIGR02922. Two members of this family are found in Colwellia psychrerythraea 34H and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by TIGR02595.
Probab=21.08 E-value=69 Score=22.18 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=13.6
Q ss_pred HhhcCCEEEEEchHHH
Q 015523 311 QKVAGRIYGAVCSSPI 326 (405)
Q Consensus 311 ~~~~~k~i~aic~g~~ 326 (405)
-+++||-|+++|.|-.
T Consensus 40 eFkrGKsIiAV~EGe~ 55 (67)
T TIGR02922 40 EFKRGKSIIAVCEGEI 55 (67)
T ss_pred HHcCCCeEEEEEecce
Confidence 4678999999999965
No 482
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=20.97 E-value=1.4e+02 Score=24.74 Aligned_cols=93 Identities=16% Similarity=0.101 Sum_probs=52.7
Q ss_pred CcCEEEEEeCCC---CcHHHHHHHHHHHHhCCCe---EEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcC--
Q 015523 219 RMPRVLIPIANG---SEEIEIVTIVDILRRAKVD---VVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG-- 290 (405)
Q Consensus 219 ~~~~V~il~~~g---~~~~e~~~~~~~l~~~~~~---v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpg-- 290 (405)
...||+|+...- ..+.=+.+..+.|.+.|.. ++++..-|- .-+.+....... ..+||+++..|
T Consensus 6 ~~~ri~IV~s~fn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa------~EiP~a~~~l~~---s~~~DavIaLG~V 76 (141)
T PLN02404 6 EGLRFGVVVARFNEIITKNLLEGALETFKRYSVKEENIDVVWVPGS------FEIPVVAQRLAK---SGKYDAILCIGAV 76 (141)
T ss_pred CCCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEEcCcH------HHHHHHHHHHHh---cCCCCEEEEEEEE
Confidence 458999998653 3555567788888888864 566644441 111111111111 25699998777
Q ss_pred --CccchHhhhcChHHHHHHHHHhhcCCEEEE
Q 015523 291 --GVAGAERLQKSRILKKLLKEQKVAGRIYGA 320 (405)
Q Consensus 291 --G~~~~~~~~~~~~l~~~l~~~~~~~k~i~a 320 (405)
|.-.......+.-...+.+-..+.++||+.
T Consensus 77 IrGeT~H~e~V~~~v~~gl~~vsl~~~~PV~~ 108 (141)
T PLN02404 77 IRGDTTHYDAVANSAASGVLSAGLNSGVPCIF 108 (141)
T ss_pred EeCCCchhHHHHHHHHHHHHHHHhccCCCEEE
Confidence 422223333444455555555677888764
No 483
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.93 E-value=2.1e+02 Score=20.45 Aligned_cols=36 Identities=19% Similarity=0.055 Sum_probs=27.3
Q ss_pred CCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEc
Q 015523 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVC 322 (405)
Q Consensus 281 ~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic 322 (405)
++=|.+++..-.+ +.+++.+.++.+.++|..+.+++
T Consensus 46 ~~~d~~i~iS~sg------~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 46 RKGDVVIALSYSG------RTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCCEEEEEECCC------CCHHHHHHHHHHHHcCCeEEEEe
Confidence 3447777665431 46789999999999999999998
No 484
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=20.91 E-value=1.5e+02 Score=25.63 Aligned_cols=40 Identities=23% Similarity=0.166 Sum_probs=29.9
Q ss_pred CCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEcc
Q 015523 76 SHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICA 120 (405)
Q Consensus 76 ~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~ 120 (405)
++..+|+++|-|.. .. +..+.++.++++..+.|++.|+++
T Consensus 70 sPR~aDillVeG~V--T~---~m~~~l~~~~e~~p~pk~VIAvGa 109 (180)
T PRK14820 70 SPRQADMLMVMGTI--AK---KMAPVLKQVYLQMAEPRWVVAVGA 109 (180)
T ss_pred CCccceEEEEEecC--Cc---ccHHHHHHHHHhcCCCCeEEEEec
Confidence 44679999999973 21 235677778888889999999954
No 485
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=20.89 E-value=3.3e+02 Score=27.66 Aligned_cols=94 Identities=19% Similarity=0.244 Sum_probs=50.7
Q ss_pred CCcCEEEEEeCC--CC-cHHHH-H-HHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCc
Q 015523 218 DRMPRVLIPIAN--GS-EEIEI-V-TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGV 292 (405)
Q Consensus 218 ~~~~~V~il~~~--g~-~~~e~-~-~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~ 292 (405)
.+++|+.||+-| |- ..... . .+...|.+++++++++-.+..... .....+.....||.|++.||-
T Consensus 109 ~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA----------~~la~~~~~~~~D~VV~vGGD 178 (481)
T PLN02958 109 GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHA----------KEVVRTMDLSKYDGIVCVSGD 178 (481)
T ss_pred cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHH----------HHHHHHhhhcCCCEEEEEcCC
Confidence 367888888765 32 22222 2 355588999998877654432011 001112223569999999994
Q ss_pred cchHhhhcChHHHHHHHHHhhc-------CCEEEEEchHHH-HHHH
Q 015523 293 AGAERLQKSRILKKLLKEQKVA-------GRIYGAVCSSPI-VLHK 330 (405)
Q Consensus 293 ~~~~~~~~~~~l~~~l~~~~~~-------~k~i~aic~g~~-~La~ 330 (405)
+ .+.+.++.+... .-+++-|=.|+. -+|+
T Consensus 179 -G--------TlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfAr 215 (481)
T PLN02958 179 -G--------ILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAK 215 (481)
T ss_pred -C--------HHHHHHHHHhhCccccccccCceEEecCcCcchhhh
Confidence 2 344444444322 345666655554 3344
No 486
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=20.87 E-value=1.6e+02 Score=25.03 Aligned_cols=89 Identities=13% Similarity=0.107 Sum_probs=45.6
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523 17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 96 (405)
Q Consensus 17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~ 96 (405)
.+||.++ |..+..+..+.+.|++.-..+.+++...+ +...... +..++.+....+|+|+|-=|.+
T Consensus 46 ~~~v~ll---G~~~~~~~~~~~~l~~~yp~l~i~g~~~g-~~~~~~~-----~~i~~~I~~~~pdiv~vglG~P------ 110 (171)
T cd06533 46 GLRVFLL---GAKPEVLEKAAERLRARYPGLKIVGYHHG-YFGPEEE-----EEIIERINASGADILFVGLGAP------ 110 (171)
T ss_pred CCeEEEE---CCCHHHHHHHHHHHHHHCCCcEEEEecCC-CCChhhH-----HHHHHHHHHcCCCEEEEECCCC------
Confidence 4566666 55566666666677766556666664333 2221110 0023344445789999976632
Q ss_pred cChHHHHHHHHHHHcCCEEEEEccchH
Q 015523 97 DCEILKKITSKQAEEKRLYGAICAAPA 123 (405)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~i~aic~g~~ 123 (405)
..+ .|+.+...+...-..+|.|++
T Consensus 111 kQE---~~~~~~~~~l~~~v~~~vG~~ 134 (171)
T cd06533 111 KQE---LWIARHKDRLPVPVAIGVGGS 134 (171)
T ss_pred HHH---HHHHHHHHHCCCCEEEEecee
Confidence 223 345554444433344444444
No 487
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=20.85 E-value=2.3e+02 Score=29.74 Aligned_cols=92 Identities=17% Similarity=0.090 Sum_probs=60.9
Q ss_pred CcCEEEEEeC-------------CCCc---HHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCC
Q 015523 219 RMPRVLIPIA-------------NGSE---EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESV 282 (405)
Q Consensus 219 ~~~~V~il~~-------------~g~~---~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~ 282 (405)
...||+||-. .... -.++.++++.|.-..++|+++|=+.= ..+ . .+++
T Consensus 434 ~~~kVAvLn~WGklRsW~~~~v~Hal~ykq~ysy~GilEaLSGlp~dV~FISFdDi-----------~~~----g-i~~d 497 (716)
T PF09508_consen 434 CPFKVAVLNSWGKLRSWQCHMVAHALYYKQIYSYIGILEALSGLPFDVEFISFDDI-----------REN----G-ILED 497 (716)
T ss_dssp -SSEEEEEESSGGGGTTTTT-SSTT---TTTHHHHHHHHHHHTSSSEEEEEEHHHH-----------HHH------S-TT
T ss_pred ccceEEEeechhhhchhhhcccccccchhhhhhHHHHHHHhcCCCceeEEecHHHH-----------hhc----C-Cccc
Confidence 3578999953 2222 37889999999999999999987741 111 1 1356
Q ss_pred ccEEEEcCCccch---HhhhcChHHHHHHHHHhhcCCEEEEEchHHH
Q 015523 283 YDLIILPGGVAGA---ERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 326 (405)
Q Consensus 283 ~D~livpgG~~~~---~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~ 326 (405)
.|+||=.|.-..+ -....++.+...||++..+|.-.++++.-+.
T Consensus 498 idViINaGdA~TA~SGG~~W~d~~iv~~lr~fV~~GGGfIGVGEPsA 544 (716)
T PF09508_consen 498 IDVIINAGDAGTAWSGGENWKDPKIVTALREFVYNGGGFIGVGEPSA 544 (716)
T ss_dssp --EEEEEESTTSTTT-GGGGG-HHHHHHHHHHHHTT-EEEEEESTEE
T ss_pred CCEEEecCcccccccCccccCCHHHHHHHHHHHHcCCCEEEcCCCcc
Confidence 7999877632111 2357899999999999999999999886543
No 488
>PRK14819 NADH dehydrogenase subunit B; Provisional
Probab=20.84 E-value=1.7e+02 Score=26.71 Aligned_cols=39 Identities=23% Similarity=0.138 Sum_probs=25.6
Q ss_pred CCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEch
Q 015523 280 ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCS 323 (405)
Q Consensus 280 ~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~ 323 (405)
+.++|+++|-|... . +....+..+.++..+-|+|+|+++
T Consensus 69 PRhADIlLVtG~VT--~---km~~~L~rlyeqmP~PK~VIAvGa 107 (264)
T PRK14819 69 PRQADLMIVAGTVT--K---KMAPQVVRLYNQMPEPRYVISMGA 107 (264)
T ss_pred CCcceEEEEecCCc--h---hhHHHHHHHHHhccCCCeEEEEcc
Confidence 46799999999752 1 222333444446778899998854
No 489
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=20.70 E-value=1.7e+02 Score=25.34 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=31.0
Q ss_pred cCEEEEEeCCCCcH----HHHHHHHHHHHhCCCeEEEEeecC
Q 015523 220 MPRVLIPIANGSEE----IEIVTIVDILRRAKVDVVVASVER 257 (405)
Q Consensus 220 ~~~V~il~~~g~~~----~e~~~~~~~l~~~~~~v~~vs~~~ 257 (405)
.+||+|++.||.+. ..+..+...|++.|..+-.++...
T Consensus 108 ~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~ 149 (192)
T cd01473 108 APKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGA 149 (192)
T ss_pred CCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEecc
Confidence 48999999999864 346677888999999999988853
No 490
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=20.68 E-value=4.7e+02 Score=22.30 Aligned_cols=86 Identities=15% Similarity=0.138 Sum_probs=46.9
Q ss_pred HHHHH-HhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEE-EcCCccchHhhhcChHHHHHHHHHhhcCC
Q 015523 239 IVDIL-RRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLII-LPGGVAGAERLQKSRILKKLLKEQKVAGR 316 (405)
Q Consensus 239 ~~~~l-~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~li-vpgG~~~~~~~~~~~~l~~~l~~~~~~~k 316 (405)
+++-| -+.++.+.+.--+. .+.+++.....+-|+ -|| .+-+ .+..--++.++++ ...-
T Consensus 34 v~qYL~~e~g~~~~VyRNDe---------------iTV~El~~~NP~~LliSPG-PG~P---~DsGIs~~~i~~f-~~~i 93 (223)
T KOG0026|consen 34 LCQYLMGELGCHFEVYRNDE---------------LTVEELKRKNPRGLLISPG-PGTP---QDSGISLQTVLEL-GPLV 93 (223)
T ss_pred HHHHhhhccCccEEEEecCc---------------ccHHHHhhcCCCeEEecCC-CCCC---ccccchHHHHHHh-CCCC
Confidence 33444 45677777664432 122333223445555 455 2111 1455566667754 4468
Q ss_pred EEEEEchHHHHHHHc----------CCCCCCeeecCcc
Q 015523 317 IYGAVCSSPIVLHKH----------GLLKAKKATAHPS 344 (405)
Q Consensus 317 ~i~aic~g~~~La~a----------GlL~g~~~t~~~~ 344 (405)
++.++|.|...+.++ ++..|+.--.++.
T Consensus 94 P~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D 131 (223)
T KOG0026|consen 94 PLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYD 131 (223)
T ss_pred ceeeeehhhhhhhhhhCcEEeccCcceeeccccccccC
Confidence 899999999977532 3556655444443
No 491
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.63 E-value=1.5e+02 Score=26.66 Aligned_cols=85 Identities=15% Similarity=0.012 Sum_probs=46.8
Q ss_pred EEEEEeCCC----CcHHHHHHHHHHHHhCCCeEEEEeecC-CceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523 222 RVLIPIANG----SEEIEIVTIVDILRRAKVDVVVASVER-STQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 296 (405)
Q Consensus 222 ~V~il~~~g----~~~~e~~~~~~~l~~~~~~v~~vs~~~-~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~ 296 (405)
||++++.+. |...-..++.+.+.+.|+.+.+...+. . +-.- ...++.+.....|++++.+..
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~~~~~~~-~~~~--------~~~i~~l~~~~vdgiii~~~~---- 67 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYRGPETFD-VADM--------ARLIEAAIAAKPDGIVVTIPD---- 67 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEEEECCCCCC-HHHH--------HHHHHHHHHhCCCEEEEeCCC----
Confidence 466766543 344445567777778899998876654 2 1000 011122222568999886532
Q ss_pred hhhcChHHHHHHHHHhhcCCEEEEEch
Q 015523 297 RLQKSRILKKLLKEQKVAGRIYGAVCS 323 (405)
Q Consensus 297 ~~~~~~~l~~~l~~~~~~~k~i~aic~ 323 (405)
...+.+.++...+++.+++.+..
T Consensus 68 ----~~~~~~~l~~~~~~~ipvV~~~~ 90 (271)
T cd06312 68 ----PDALDPAIKRAVAAGIPVISFNA 90 (271)
T ss_pred ----hHHhHHHHHHHHHCCCeEEEeCC
Confidence 11223345555566777777753
No 492
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=20.59 E-value=1.7e+02 Score=28.69 Aligned_cols=91 Identities=13% Similarity=0.060 Sum_probs=48.5
Q ss_pred cCEEEEEeCCCC--cHHHHHHHHHHHH--hCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch
Q 015523 220 MPRVLIPIANGS--EEIEIVTIVDILR--RAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 295 (405)
Q Consensus 220 ~~~V~il~~~g~--~~~e~~~~~~~l~--~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~ 295 (405)
+++|.|+-.... ...=.-.+.+.++ ..|.++++.....- .++....++ .++|++++.....+.
T Consensus 247 ~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~-----------~~~~i~~~~--~~~d~ii~GspT~~~ 313 (394)
T PRK11921 247 ENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKS-----------DKNDIITEV--FKSKAILVGSSTINR 313 (394)
T ss_pred cCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCC-----------CHHHHHHHH--HhCCEEEEECCCcCc
Confidence 467777766533 3322333456666 45677776654331 011111222 468999987643221
Q ss_pred HhhhcChHHHHHHHHHhhcCCEEEEEch
Q 015523 296 ERLQKSRILKKLLKEQKVAGRIYGAVCS 323 (405)
Q Consensus 296 ~~~~~~~~l~~~l~~~~~~~k~i~aic~ 323 (405)
..+..-..+++.++...-+||+++.+++
T Consensus 314 ~~~~~~~~~l~~l~~~~~~~K~~a~FGs 341 (394)
T PRK11921 314 GILSSTAAILEEIKGLGFKNKKAAAFGS 341 (394)
T ss_pred cccHHHHHHHHHhhccCcCCCEEEEEec
Confidence 2222233455555555567899988887
No 493
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=20.52 E-value=2.9e+02 Score=20.80 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=29.0
Q ss_pred cEEEEEecCCCchhhH--HHHHHHHHhcCCEEEEEecCC
Q 015523 18 LNVLVPVGFGTEEMEA--VIIVDVLRRAGAQVTMASVEP 54 (405)
Q Consensus 18 ~ki~ill~~g~~~~e~--~~~~~~l~~~~~~v~~vs~~~ 54 (405)
+||.++...|+.-+-+ ..+.+.|.+.|+++++...+-
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~ 41 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRV 41 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecH
Confidence 3799999999876666 566699999999888877443
No 494
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=20.48 E-value=4.3e+02 Score=25.52 Aligned_cols=156 Identities=5% Similarity=-0.111 Sum_probs=0.0
Q ss_pred CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523 16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 95 (405)
Q Consensus 16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~ 95 (405)
..+|+.|+.-++....-...+.+.|+..++++..+-..++.+-.+.....-..+...+.-...++|+|+-.|| ...-
T Consensus 25 ~~~~~lvVtd~~v~~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG-G~v~-- 101 (354)
T cd08199 25 GSGRRFVVVDQNVDKLYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGG-GVLT-- 101 (354)
T ss_pred CCCeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECC-cHHH--
Q ss_pred ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCCCccccCcEEEeCCeEcCCCcccHHHH
Q 015523 96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEF 175 (405)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~~~~~~~v~dg~iiT~~g~~~~~~~ 175 (405)
++-+++...+.++.+++.+.+ . ++|....--|-+..........+-...+....++.|-.++...-..-...-
T Consensus 102 ----D~ak~~A~~~~rg~p~i~VPT--T-~lA~vD~~~g~K~~i~~~~~kn~ig~~~~P~~viiD~~~l~tlP~~~~~~G 174 (354)
T cd08199 102 ----DVAGLAASLYRRGTPYVRIPT--T-LVGLIDAGVGIKTGVNFGGYKNRLGAYHPPTLTLLDRSFLATLPERHIRNG 174 (354)
T ss_pred ----HHHHHHHHHhcCCCCEEEEcC--c-cceeeecCCCCceEEeCCCCccccccCCCCCEEEEcHHHHhhCCHHHHHhH
Q ss_pred HHHHHH
Q 015523 176 ALCLVE 181 (405)
Q Consensus 176 ~l~ii~ 181 (405)
...+++
T Consensus 175 ~~e~ik 180 (354)
T cd08199 175 LAEIIK 180 (354)
T ss_pred HHHHHH
No 495
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=20.42 E-value=3.2e+02 Score=24.10 Aligned_cols=53 Identities=23% Similarity=0.348 Sum_probs=40.4
Q ss_pred CCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeec
Q 015523 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATA 341 (405)
Q Consensus 281 ~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~ 341 (405)
-..|.+++.- .++++.-...+..||-.....||..--.-.|+. ||+.|+|+-.
T Consensus 86 ~aAD~vVi~~---PM~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~-----GLl~gKKv~~ 138 (202)
T COG1182 86 LAADKVVIAA---PMYNFNIPAQLKAYIDHIAVAGKTFKYTENGPV-----GLLTGKKVLI 138 (202)
T ss_pred HhcCeEEEEe---cccccCCCHHHHHHHHHHhcCCceEEeccCCcc-----cccCCceEEE
Confidence 4467777753 366777788999999999999999887777764 6777888643
No 496
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.26 E-value=1.3e+02 Score=27.03 Aligned_cols=61 Identities=15% Similarity=0.035 Sum_probs=33.6
Q ss_pred EEEEEeCC---CCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCC
Q 015523 222 RVLIPIAN---GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG 291 (405)
Q Consensus 222 ~V~il~~~---g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG 291 (405)
+|++++.+ .|...-+.++.+.+.+.|+++.++..... +-.. ...+.......+|++++.+.
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~-~~~~--------~~~i~~~~~~~~dgiii~~~ 64 (277)
T cd06319 1 QIAYIVSDLRIPFWQIMGRGVKSKAKALGYDAVELSAENS-AKKE--------LENLRTAIDKGVSGIIISPT 64 (277)
T ss_pred CeEEEeCCCCchHHHHHHHHHHHHHHhcCCeEEEecCCCC-HHHH--------HHHHHHHHhcCCCEEEEcCC
Confidence 46777654 34444455666777778898887654432 1100 01122222257899988553
No 497
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.25 E-value=4.2e+02 Score=20.61 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=48.4
Q ss_pred cCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHH
Q 015523 25 GFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKI 104 (405)
Q Consensus 25 ~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~ 104 (405)
.-|.+..-...+...|...+..+..+.+.. .+. ...... .+-|.+|+.+.. ...+++.+.
T Consensus 7 G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~--~~~----------~~~~~~--~~~d~vi~iS~s------G~t~~~~~~ 66 (128)
T cd05014 7 GVGKSGHIARKIAATLSSTGTPAFFLHPTE--ALH----------GDLGMV--TPGDVVIAISNS------GETDELLNL 66 (128)
T ss_pred eCcHhHHHHHHHHHHhhcCCCceEEcccch--hhc----------cccCcC--CCCCEEEEEeCC------CCCHHHHHH
Confidence 445555555556666766677776663321 111 011222 245888888651 256789999
Q ss_pred HHHHHHcCCEEEEEccc
Q 015523 105 TSKQAEEKRLYGAICAA 121 (405)
Q Consensus 105 l~~~~~~~~~i~aic~g 121 (405)
++.+.+++.++.+++..
T Consensus 67 ~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 67 LPHLKRRGAPIIAITGN 83 (128)
T ss_pred HHHHHHCCCeEEEEeCC
Confidence 99999999999999884
Done!