Query 015524
Match_columns 405
No_of_seqs 129 out of 152
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:07:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03676 UPF0183: Uncharacteri 100.0 3E-125 7E-130 957.5 37.4 362 26-400 1-389 (394)
2 KOG2819 Uncharacterized conser 100.0 9E-119 2E-123 874.3 25.6 370 18-401 1-401 (413)
3 PF04355 SmpA_OmlA: SmpA / Oml 57.8 15 0.00034 28.4 3.8 21 234-254 11-31 (71)
4 PRK11251 DNA-binding transcrip 49.8 30 0.00064 30.1 4.5 21 234-254 35-55 (109)
5 COG4454 Uncharacterized copper 41.4 17 0.00037 33.6 1.9 20 300-319 133-152 (158)
6 PF05610 DUF779: Protein of un 30.5 37 0.00079 29.0 2.0 20 17-37 65-84 (95)
7 PF14105 DUF4278: Domain of un 30.4 83 0.0018 23.7 3.8 15 139-153 23-37 (57)
8 PF08006 DUF1700: Protein of u 30.1 21 0.00045 32.8 0.5 30 238-267 40-69 (181)
9 PF11399 DUF3192: Protein of u 28.4 41 0.00088 29.1 2.0 27 234-260 30-56 (102)
10 PF14504 CAP_assoc_N: CAP-asso 27.8 37 0.00081 30.5 1.7 19 237-255 1-19 (141)
11 PF15530 Toxin_50: Putative to 26.9 68 0.0015 29.8 3.2 35 122-156 90-137 (168)
12 PRK11548 outer membrane biogen 26.5 1.3E+02 0.0027 25.9 4.7 20 234-253 45-64 (113)
13 PF00609 DAGK_acc: Diacylglyce 25.8 25 0.00055 31.8 0.3 18 281-298 2-19 (161)
14 PF02728 Cu_amine_oxidN3: Copp 24.6 88 0.0019 26.1 3.4 29 283-311 68-100 (101)
15 KOG2667 COPII vesicle protein 23.7 84 0.0018 33.1 3.6 21 115-135 235-257 (379)
16 PF03676 UPF0183: Uncharacteri 20.8 3.2E+02 0.0069 28.9 7.2 75 18-92 197-291 (394)
17 PRK10301 hypothetical protein; 20.1 3.1E+02 0.0067 24.1 6.0 41 61-102 32-73 (124)
No 1
>PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function.
Probab=100.00 E-value=3.2e-125 Score=957.50 Aligned_cols=362 Identities=46% Similarity=0.836 Sum_probs=332.7
Q ss_pred CCcccceecCCcHHHHHHHHHcCCCccceEEEEEcCCCCCccceEEEcCCCCeEEEecCCCCeEEEEEEeeCCcceEEEc
Q 015524 26 GVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYA 105 (405)
Q Consensus 26 G~gLG~f~LG~sL~~vl~~Lk~~~~~~~~v~i~Ys~~~Pl~~~Ivi~lp~~GirL~Fd~~~QRL~lIEV~d~~~~~L~Y~ 105 (405)
|.++|+|+|||||||||++||+++++||+|||+||+++|+..||||+||++||||+|||++||||||||+||++++|+|+
T Consensus 1 ~~~~g~f~LG~~l~~vl~~lk~~~~~~~~v~~~Y~~~~P~~~~ivi~l~~~GirL~Fd~~~QrL~lIEv~d~~~i~L~Y~ 80 (394)
T PF03676_consen 1 GNSLGEFVLGMSLHQVLTILKSEPQTFPKVDLIYSDQDPLSSDIVINLPENGIRLRFDGPSQRLRLIEVYDFSKIKLRYK 80 (394)
T ss_pred CCccceEEcCCcHHHHHHHHHhccccCCceEEEECCCCCCcCCEEEEcCCCCeEEEECCCCcEEEEEEEecCccceEEeC
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccceeeeeccccCCCCCCccCCCCcEEEEeeCceEEEEeCCcccccccccccCCcccccCCCCCcceeEEEE
Q 015524 106 TSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSI 185 (405)
Q Consensus 106 ~~~~~~~~~~~tf~~Iy~~FGPTyPG~y~~~~~~Y~LsYpGlaF~Fpi~~~~~~~~~~~~~~l~l~f~~~~~p~~~~m~I 185 (405)
+++|++|++.|||++||++|||||||+||+++++|+||||||||+||+++++++.+.++.+ +++++++++|+|++|+|
T Consensus 81 ~~~~~~p~~~pTf~~Iy~~FGPTyPG~yd~~~~~YvLsYpGlaF~Fpi~~~~~~~~~~~~~--sl~~~~~ssp~~tsmaI 158 (394)
T PF03676_consen 81 GSVFSSPEIGPTFRHIYRLFGPTYPGEYDKSRGTYVLSYPGLAFSFPIPSKFQSSYSDGLD--SLEFPSGSSPVATSMAI 158 (394)
T ss_pred cccccCcccCcchheeheccCCCCCCccCCCCCEEEEEECCEEEEeeCchhhcccccCCcc--eeecCCCCCcceeEEEE
Confidence 9999999999999999999999999999999999999999999999999988888887753 88999999999999999
Q ss_pred eeCCCCcccccCCcccccCCCCCCC----CCeEEEEEEEEcC------CcEEEEecc--------------eEEEcCCCH
Q 015524 186 YDGSADKKVGVGSLFDKAIAPSLPV----GSLYIEEVHAKLG------EELHFTVGS--------------QHIPFGASP 241 (405)
Q Consensus 186 ~~~~~~~~v~~G~s~~e~~~p~l~~----~~~~~e~v~v~~~------~~l~f~~~~--------------~~I~~G~T~ 241 (405)
| +|++|++++.|++|. +++|+++|+|... .++.|.... ++|+||+||
T Consensus 159 f---------~G~s~~ear~p~lp~~~~~~~~~~~~v~v~~~~~~~~~~~l~l~~~~g~~~~~~~~~~~~~~~I~fGdT~ 229 (394)
T PF03676_consen 159 F---------SGSSWAEARAPPLPLSCYCGNLYLESVEVLRDNKETVGLELSLVTEGGPGRIEEPRRSNFERWIRFGDTP 229 (394)
T ss_pred E---------cCCchhcccCCCccccccCCCcceeeEEeeccCCCCcCcEEEEEEcCCCcccccccccCceEEEEeCCCH
Confidence 9 999999999987764 8889999988433 245544332 699999999
Q ss_pred HHHHHhcCCCCccccccCCceeeccCCCCCCCCCccCcceeeecccceeEEEeCCcceEEEEEeeeCCCCCcCCCcceee
Q 015524 242 QDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKC 321 (405)
Q Consensus 242 QDV~~eLG~P~~if~K~ddrm~IH~~~~~~~~~~~~~dyFyNYF~lGlDiLfd~~t~~v~K~ILHtN~PG~y~Fn~Y~RC 321 (405)
|||++|||||++||||+||||+||++++.+...+..+|||||||+||||||||++||+|||||||||+||||+||+|+||
T Consensus 230 qdv~~~lG~P~~~~~k~~d~m~ih~~~~~~~~~~~~~~yf~nYf~~G~Dilfd~~~~~v~K~ILHtN~PG~~~Fn~y~rC 309 (394)
T PF03676_consen 230 QDVLSELGPPDRIFYKSDDRMSIHSPSSHKQVPSKPSDYFYNYFTLGLDILFDGNTHRVKKFILHTNIPGHYDFNRYNRC 309 (394)
T ss_pred HHHHHhhCCccceeecccccccccccccccCCccCCCCEEEeccccceEEEEeCCCceEEEEEEecCCCCCccccceeee
Confidence 99999999999999999999999999888777788899999999999999999999999999999999999999999999
Q ss_pred eEEEeccCCCCCcccccCcccccCCCCChhHHHhhhCCCC-CceEecCCCCC--CCCcceEEeeeCCeEEEEEcCCCccc
Q 015524 322 NFIILGSDFAGTSAEVHSYKNKITPNTKWEQVKEILGDCG-RAAIQTQGSTS--NPFGSTFVYGYQNIAFEVDIFLGLIA 398 (405)
Q Consensus 322 ~w~I~~~~~~~~~~~~~~~~~~it~~~~~d~i~~~l~~~~-rpvvLnR~~~~--nPfGsT~lYG~~~iifEVm~~N~~Ia 398 (405)
||+|....++..+ +.......|+++++||+|++.|++.. |||||||++.+ ||||+|+||||+||||||| +||+||
T Consensus 310 ~f~I~~~~~~~~~-~~~~~~~~i~~~~kwd~i~~~L~~~~~~pvvl~r~s~~n~npfGsT~~yG~~~~IfEVm-~n~~Ia 387 (394)
T PF03676_consen 310 NFEIELSNDSNET-DSPTNSPMITPYTKWDDIQEILGKAEDRPVVLNRASSSNDNPFGSTFLYGYQGIIFEVM-KNGHIA 387 (394)
T ss_pred eeEEEecCccccc-ccccccceeeccCCHhHhHHhhcccccCCcccccccccCCCCCcceeEeCCCCEEEEEe-cCCcEE
Confidence 9999997643321 22222335999999999999997655 99999999876 9999999999999999999 999999
Q ss_pred cC
Q 015524 399 LP 400 (405)
Q Consensus 399 s~ 400 (405)
|.
T Consensus 388 sV 389 (394)
T PF03676_consen 388 SV 389 (394)
T ss_pred EE
Confidence 85
No 2
>KOG2819 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.7e-119 Score=874.29 Aligned_cols=370 Identities=45% Similarity=0.753 Sum_probs=336.1
Q ss_pred eeEEEEecCCcccc----eecCCcHHHHHHHHHcCCCccceEEEEEcCCCCCccceEEEcCCCCeEEEecCCCCeEEEEE
Q 015524 18 AIVLDLRPGVGIGP----FSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIE 93 (405)
Q Consensus 18 ml~l~l~PG~gLG~----f~LG~sL~~vl~~Lk~~~~~~~~v~i~Ys~~~Pl~~~Ivi~lp~~GirL~Fd~~~QRL~lIE 93 (405)
||+++++|.++||. |+|||+|+||+++|++|++++++|||+||+++||..||||+||++||||+|||.+||||+||
T Consensus 1 ~Ld~tvVpd~~lg~~~~eF~lGMpi~qaiAiiqqh~riik~VqvlYsd~~Pl~~DiIinl~qdGirL~FD~~sQrLKlIE 80 (413)
T KOG2819|consen 1 MLDLTVVPDVSLGSSQWEFVLGMPIAQAIAIIQQHPRIIKNVQVLYSDQDPLSHDIIINLPQDGIRLMFDPFSQRLKLIE 80 (413)
T ss_pred CCceeEecccccCCccceeEecChHHHHHHHHHhCccceeeEEEEEecCCCcceeEEEecCCCceEEEechhhhceeEEE
Confidence 78999999999996 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCcceEEEccccccCCCccceeeeeccccCCCCCCccCCCCcEEEEeeCceEEEEeCCcccccccccc--cCCcccc
Q 015524 94 IFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDR--EAELPLE 171 (405)
Q Consensus 94 V~d~~~~~L~Y~~~~~~~~~~~~tf~~Iy~~FGPTyPG~y~~~~~~Y~LsYpGlaF~Fpi~~~~~~~~~~~--~~~l~l~ 171 (405)
|.|+++++|+|+|..|++|++.||+++|+++|||||||.||++++.|+|+||||||+||.+.+..+.+..+ .+..||+
T Consensus 81 V~dl~~vklrY~gv~fnsp~~lpTieqi~~sFGaThPGvYd~~~~iy~l~~~GLSF~fp~~~~~~~~~~~g~~h~l~sL~ 160 (413)
T KOG2819|consen 81 VFDLKKVKLRYCGVHFNSPAILPTIEQIDQSFGATHPGVYDSAHQIYVLSWPGLSFCFPGGENSNPKVHPGFAHGLRSLV 160 (413)
T ss_pred EecceEEEEEEeeeEecCcccchhHHHHHHhhCCCCCCCcCChhhhceeecCceEEECCCCCCCCcccccCccccceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999765544544332 3467999
Q ss_pred cCCCCCcceeEEEEeeCCCCcccccCCcccccCCCCCC----CCCeEEEEEEEEcCC----cEE------------E---
Q 015524 172 FPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLP----VGSLYIEEVHAKLGE----ELH------------F--- 228 (405)
Q Consensus 172 f~~~~~p~~~~m~I~~~~~~~~v~~G~s~~e~~~p~l~----~~~~~~e~v~v~~~~----~l~------------f--- 228 (405)
|++|++|+++||+|| .|++..|++.|.+| .|++|.++|.+.+.+ ||. .
T Consensus 161 ~~~g~tPv~~kmsiY---------~g~n~~e~~~~~~plscy~gq~~~rsv~~lr~~~~~~gl~lkl~t~~Gr~l~~~~~ 231 (413)
T KOG2819|consen 161 FPAGATPVVTKMSIY---------RGSNPSEPESPDLPLSCYVGQLYTRSVEVLREGGNPVGLDLKLDTQCGRILLPERV 231 (413)
T ss_pred ecCCCCceeEEEEEe---------cCCCccccccCCccchhhhhhhhhcccccccCCCCccceeEeecccCCcccccccc
Confidence 999999999999999 88999999988555 366666766665532 332 2
Q ss_pred EecceEEEcCCCHHHHHHhcCCCCccccccCCceeeccCCCCCCCCCccCcceeeecccceeEEEeCCcceEEEEEeeeC
Q 015524 229 TVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTN 308 (405)
Q Consensus 229 ~~~~~~I~~G~T~QDV~~eLG~P~~if~K~ddrm~IH~~~~~~~~~~~~~dyFyNYF~lGlDiLfd~~t~~v~K~ILHtN 308 (405)
....++|.||+|||||+++||+|.+||||+||||+||+++..|+.++.++|||||||++|+|||||+.||+|||||||||
T Consensus 232 ~v~~r~~~FGdScqDV~t~LGaP~kvf~Ks~DkMkIHs~s~~r~~~t~~ndyFfNYFtlGlDiLFD~~t~kvkKFVLHTN 311 (413)
T KOG2819|consen 232 SVYTRQIYFGDSCQDVQTMLGAPTKVFYKSEDKMKIHSPSPKRQLPTKCNDYFFNYFTLGLDILFDAVTHKVKKFVLHTN 311 (413)
T ss_pred eEeeEeeecCCcHhHHHHHhCCCcccccccccceeecCCCCcccCCCcCcchhhhhhhcchhheeecccceeeEEEEecc
Confidence 23567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCcceeeeEEEeccCCCCCcccccCcccccCCCCChhHHHhhhC-CCCCceEecCC-CCCCCCcceEEeeeCCe
Q 015524 309 YPGHADFNSYIKCNFIILGSDFAGTSAEVHSYKNKITPNTKWEQVKEILG-DCGRAAIQTQG-STSNPFGSTFVYGYQNI 386 (405)
Q Consensus 309 ~PG~y~Fn~Y~RC~w~I~~~~~~~~~~~~~~~~~~it~~~~~d~i~~~l~-~~~rpvvLnR~-~~~nPfGsT~lYG~~~i 386 (405)
+|||++||+|+||||+|.+..+.. +.++...|++++|||+|+++|+ +++|||||.|. +++||||||+||||+++
T Consensus 312 yPGH~dFnmY~rCnF~i~l~ad~~----~ads~~ei~t~skwD~ise~~~~~~~rPvvlhrq~st~nPFGSTfcyG~q~~ 387 (413)
T KOG2819|consen 312 YPGHCDFNMYHRCNFQIFLNADAA----EADSQTEIRTYSKWDEISEALGSPPERPVVLHRQSSTSNPFGSTFCYGYQRM 387 (413)
T ss_pred CCCcccccceeeeEEEEEccCCcc----ccccCceeccccchhHHHHHhcCCCCCCceeeccccccCCCccchhhhhhhh
Confidence 999999999999999999986532 2245566888999999999997 89999999996 47899999999999999
Q ss_pred EEEEEcCCCccccCC
Q 015524 387 AFEVDIFLGLIALPR 401 (405)
Q Consensus 387 ifEVm~~N~~Ias~~ 401 (405)
||||| .|++|||-.
T Consensus 388 ifEvm-~n~~i~svt 401 (413)
T KOG2819|consen 388 IFEVM-ENGHIASVT 401 (413)
T ss_pred hhhhh-ccCcccceE
Confidence 99999 999999854
No 3
>PF04355 SmpA_OmlA: SmpA / OmlA family; InterPro: IPR007450 This is a bacterial outer membrane lipoprotein, possibly involved in maintaining the structural integrity of the cell envelope []. The lipid attachment site is a conserved N-terminal cysteine residue sometimes found adjacent to the OmpA domain (IPR006665 from INTERPRO).; GO: 0019867 outer membrane; PDB: 4DM5_C 2PXG_A 2YH9_B 2KXX_A 2KM7_A.
Probab=57.82 E-value=15 Score=28.42 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=16.9
Q ss_pred EEEcCCCHHHHHHhcCCCCcc
Q 015524 234 HIPFGASPQDVWTELGRPCGI 254 (405)
Q Consensus 234 ~I~~G~T~QDV~~eLG~P~~i 254 (405)
.|..|.|-+||.+.||+|...
T Consensus 11 ~i~~GmTk~qV~~lLG~P~~~ 31 (71)
T PF04355_consen 11 QIKPGMTKDQVRALLGSPSLR 31 (71)
T ss_dssp TT-TTSBHHHHHHHHTS-SEE
T ss_pred hhcCCCCHHHHHHhcCCCCcc
Confidence 467798889999999999887
No 4
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=49.85 E-value=30 Score=30.12 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.6
Q ss_pred EEEcCCCHHHHHHhcCCCCcc
Q 015524 234 HIPFGASPQDVWTELGRPCGI 254 (405)
Q Consensus 234 ~I~~G~T~QDV~~eLG~P~~i 254 (405)
.|..|.|-|+|...||.|...
T Consensus 35 qv~~GmTr~qV~~~lGtP~~~ 55 (109)
T PRK11251 35 DVKKGMTRQQVAQIAGKPSSE 55 (109)
T ss_pred HcCCCCCHHHHHHHcCCCCcc
Confidence 678899999999999999754
No 5
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=41.39 E-value=17 Score=33.63 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=16.6
Q ss_pred EEEEEeeeCCCCCcCCCcce
Q 015524 300 IKKFIMHTNYPGHADFNSYI 319 (405)
Q Consensus 300 v~K~ILHtN~PG~y~Fn~Y~ 319 (405)
--|+=+-+|+||||+++++-
T Consensus 133 ~g~ye~~C~iPGHy~AGM~g 152 (158)
T COG4454 133 AGKYEFACNIPGHYEAGMVG 152 (158)
T ss_pred CccEEEEecCCCcccCCcEE
Confidence 34677889999999999874
No 6
>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function.
Probab=30.53 E-value=37 Score=29.03 Aligned_cols=20 Identities=45% Similarity=0.865 Sum_probs=16.0
Q ss_pred ceeEEEEecCCcccceecCCc
Q 015524 17 GAIVLDLRPGVGIGPFSLGMP 37 (405)
Q Consensus 17 ~ml~l~l~PG~gLG~f~LG~s 37 (405)
.-|+++|+||+| |.|.|..+
T Consensus 65 t~L~iDVv~GrG-~~FSLE~~ 84 (95)
T PF05610_consen 65 TQLTIDVVPGRG-GGFSLEAP 84 (95)
T ss_pred cEEEEEEEecCC-CeeeccCC
Confidence 358899999999 66887654
No 7
>PF14105 DUF4278: Domain of unknown function (DUF4278)
Probab=30.42 E-value=83 Score=23.68 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=9.0
Q ss_pred EEEEeeCceEEEEeC
Q 015524 139 VYMLFYPGLSFAFPI 153 (405)
Q Consensus 139 ~Y~LsYpGlaF~Fpi 153 (405)
...+.|+|+++.+..
T Consensus 23 ~v~~~YRG~~y~~~~ 37 (57)
T PF14105_consen 23 EVEGTYRGQDYRFRY 37 (57)
T ss_pred ceeeeECcceecccc
Confidence 356677777765443
No 8
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=30.06 E-value=21 Score=32.81 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=22.4
Q ss_pred CCCHHHHHHhcCCCCccccccCCceeeccC
Q 015524 238 GASPQDVWTELGRPCGIHQKQVDQMVIHSA 267 (405)
Q Consensus 238 G~T~QDV~~eLG~P~~if~K~ddrm~IH~~ 267 (405)
|+|-||++++||.|..+-++--+...|+..
T Consensus 40 G~sEeeii~~LG~P~~iA~~i~~~~~i~~~ 69 (181)
T PF08006_consen 40 GKSEEEIIAELGSPKEIAREILAEYSIKEE 69 (181)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHhhhhhhh
Confidence 779999999999999887654444445443
No 9
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=28.39 E-value=41 Score=29.09 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.6
Q ss_pred EEEcCCCHHHHHHhcCCCCccccccCC
Q 015524 234 HIPFGASPQDVWTELGRPCGIHQKQVD 260 (405)
Q Consensus 234 ~I~~G~T~QDV~~eLG~P~~if~K~dd 260 (405)
.+.+|.|-++|++.||.|+-.--|..+
T Consensus 30 ~L~lg~s~~~V~~~lG~pdfsEa~~~~ 56 (102)
T PF11399_consen 30 KLSLGMSKDQVIALLGTPDFSEAYRKD 56 (102)
T ss_pred hcCCCCCHHHHHHHhCCCCchhheeeC
Confidence 778999999999999999987555544
No 10
>PF14504 CAP_assoc_N: CAP-associated N-terminal
Probab=27.81 E-value=37 Score=30.49 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=17.3
Q ss_pred cCCCHHHHHHhcCCCCccc
Q 015524 237 FGASPQDVWTELGRPCGIH 255 (405)
Q Consensus 237 ~G~T~QDV~~eLG~P~~if 255 (405)
||+|.++|.+.||.|+|+.
T Consensus 1 IG~s~~~v~~~~G~P~R~~ 19 (141)
T PF14504_consen 1 IGKSKEEVEEKLGEPDRID 19 (141)
T ss_pred CCCCHHHHHHHcCCccEee
Confidence 6999999999999999874
No 11
>PF15530 Toxin_50: Putative toxin 50
Probab=26.94 E-value=68 Score=29.76 Aligned_cols=35 Identities=37% Similarity=0.776 Sum_probs=24.2
Q ss_pred ccccCCCCCCcc-CCCC----------cEEEEee--CceEEEEeCCcc
Q 015524 122 YALFGPTFPGVY-DKER----------SVYMLFY--PGLSFAFPIPAQ 156 (405)
Q Consensus 122 y~~FGPTyPG~y-~~~~----------~~Y~LsY--pGlaF~Fpi~~~ 156 (405)
-=.|||=+||.+ |+++ ...-+|| -|+.|+|-+-..
T Consensus 90 Gi~FGPYfpg~~gd~~rdyS~~~g~Gv~Sv~~S~gkDG~gfSFgvGps 137 (168)
T PF15530_consen 90 GISFGPYFPGVFGDPDRDYSINLGFGVGSVEISYGKDGFGFSFGVGPS 137 (168)
T ss_pred eeecCCcCccccCCCCccceecccccceEeeeeecccCceEEeecCCc
Confidence 347999999999 5432 2234555 689999988544
No 12
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=26.53 E-value=1.3e+02 Score=25.91 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=17.5
Q ss_pred EEEcCCCHHHHHHhcCCCCc
Q 015524 234 HIPFGASPQDVWTELGRPCG 253 (405)
Q Consensus 234 ~I~~G~T~QDV~~eLG~P~~ 253 (405)
.|..|.|-++|...||.|.-
T Consensus 45 ~l~~GmTk~qV~~lLGtP~~ 64 (113)
T PRK11548 45 KIHVGMTQQQVAYTLGTPMM 64 (113)
T ss_pred HhcCCCCHHHHHHHcCCCcc
Confidence 67789999999999999943
No 13
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=25.82 E-value=25 Score=31.79 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.1
Q ss_pred eeeecccceeEEEeCCcc
Q 015524 281 FYNYYTRGLDILFDGQTH 298 (405)
Q Consensus 281 FyNYF~lGlDiLfd~~t~ 298 (405)
|.|||..|+|.-+....|
T Consensus 2 ~~NYfsiG~DA~ia~~Fh 19 (161)
T PF00609_consen 2 MNNYFSIGVDAQIALGFH 19 (161)
T ss_pred eEecccccHhhHHHHHHh
Confidence 889999999998875544
No 14
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=24.64 E-value=88 Score=26.10 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=23.9
Q ss_pred eecccc---eeEEEeCCcceEEEEEeee-CCCC
Q 015524 283 NYYTRG---LDILFDGQTHKIKKFIMHT-NYPG 311 (405)
Q Consensus 283 NYF~lG---lDiLfd~~t~~v~K~ILHt-N~PG 311 (405)
|||-|= |=+++|..+..|.|+..+. .+||
T Consensus 68 n~YahPi~gl~~~vD~~~~~vi~i~d~~v~~p~ 100 (101)
T PF02728_consen 68 NFYAHPIEGLEPLVDLDSMEVIRIEDRGVFYPG 100 (101)
T ss_dssp -GGGSEEECEEEEEETTTTEEEEEEEEEEEETT
T ss_pred cccccccCceEEEEECCCCEEEEEEeCCceeeC
Confidence 677764 5599999999999999999 7776
No 15
>KOG2667 consensus COPII vesicle protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.67 E-value=84 Score=33.07 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=17.1
Q ss_pred cceeeeecc--ccCCCCCCccCC
Q 015524 115 LATFVAVYA--LFGPTFPGVYDK 135 (405)
Q Consensus 115 ~~tf~~Iy~--~FGPTyPG~y~~ 135 (405)
...|.|+-+ .||+.|||..++
T Consensus 235 ~~n~SH~InhLSFG~~~p~~~nP 257 (379)
T KOG2667|consen 235 NLNFSHRINHLSFGEYIPGIVNP 257 (379)
T ss_pred cCCceEEEeeeccCCCCcccccC
Confidence 377888775 999999998665
No 16
>PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function.
Probab=20.76 E-value=3.2e+02 Score=28.88 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=52.5
Q ss_pred eeEEEEecCCccc------------ceecCCcHHHHHHHHHcCCCccceEEE---EEc-----CCCCCccceEEEcCCCC
Q 015524 18 AIVLDLRPGVGIG------------PFSLGMPICEAFASIEQQPNIYDVVHV---KYF-----DEEPLKLDIIISFPDHG 77 (405)
Q Consensus 18 ml~l~l~PG~gLG------------~f~LG~sL~~vl~~Lk~~~~~~~~v~i---~Ys-----~~~Pl~~~Ivi~lp~~G 77 (405)
-+.+.+.-+.|.| .+.+|.|-.+|++.|=.-..+|.+-+= +.. .......|..-+--..|
T Consensus 197 ~~~l~l~~~~g~~~~~~~~~~~~~~~I~fGdT~qdv~~~lG~P~~~~~k~~d~m~ih~~~~~~~~~~~~~~yf~nYf~~G 276 (394)
T PF03676_consen 197 GLELSLVTEGGPGRIEEPRRSNFERWIRFGDTPQDVLSELGPPDRIFYKSDDRMSIHSPSSHKQVPSKPSDYFYNYFTLG 276 (394)
T ss_pred CcEEEEEEcCCCcccccccccCceEEEEeCCCHHHHHHhhCCccceeecccccccccccccccCCccCCCCEEEeccccc
Confidence 3556666666555 378999999999999886666654321 122 22334667788889999
Q ss_pred eEEEecCCCCeEEEE
Q 015524 78 FHLRFDPWSQRLRLI 92 (405)
Q Consensus 78 irL~Fd~~~QRL~lI 92 (405)
|.+.||+.+.|++-|
T Consensus 277 ~Dilfd~~~~~v~K~ 291 (394)
T PF03676_consen 277 LDILFDGNTHRVKKF 291 (394)
T ss_pred eEEEEeCCCceEEEE
Confidence 999999988876544
No 17
>PRK10301 hypothetical protein; Provisional
Probab=20.12 E-value=3.1e+02 Score=24.05 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=29.3
Q ss_pred CCCCCccceEEEcCCCCeEEEecCCCC-eEEEEEEeeCCcceE
Q 015524 61 DEEPLKLDIIISFPDHGFHLRFDPWSQ-RLRLIEIFDIKRLQM 102 (405)
Q Consensus 61 ~~~Pl~~~Ivi~lp~~GirL~Fd~~~Q-RL~lIEV~d~~~~~L 102 (405)
..+|.....+=.-|+. |.|.|+.+=| ++.-|+|.|-+.-.+
T Consensus 32 ~s~Pa~ga~v~~~P~~-V~L~F~e~v~~~~s~i~v~~~~g~~v 73 (124)
T PRK10301 32 HQYPAANAQVTAAPQA-LTLNFSEGIEPGFSGATITGPKQENI 73 (124)
T ss_pred ccCCCCCCccccCCCE-EEEEcCCCccccccEEEEEcCCCCEe
Confidence 6778777777667766 9999998554 566788887764433
Done!