Query 015524
Match_columns 405
No_of_seqs 129 out of 152
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 14:07:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yh9_A Small protein A, BAME p 73.9 2.9 0.0001 33.1 3.8 21 234-254 12-32 (88)
2 2km7_A Small protein A; BAME, 65.5 6 0.0002 32.3 4.1 21 234-254 26-46 (102)
3 2pxg_A Outer membrane protein; 38.5 28 0.00095 29.2 3.9 21 234-254 25-45 (118)
4 4dm5_A Osmotically inducible l 15.1 61 0.0021 26.9 1.5 21 236-256 25-45 (103)
5 4h0a_A Uncharacterized protein 12.8 63 0.0022 31.4 1.2 19 237-255 45-63 (323)
6 2c9r_A COPC, copper resistance 12.7 1.6E+02 0.0055 23.6 3.4 35 62-98 7-42 (102)
7 3d8d_A Amyloid beta A4 precurs 12.4 4.7E+02 0.016 22.8 6.6 56 37-99 28-84 (148)
8 3poj_A Mannan-binding lectin s 12.2 1.3E+02 0.0043 23.7 2.7 25 304-330 16-40 (115)
9 1lyq_A PCOC copper resistance 10.6 1.8E+02 0.0063 23.4 3.2 35 62-98 8-43 (104)
10 1f46_A Cell division protein Z 10.1 85 0.0029 26.9 1.0 26 128-155 61-86 (140)
No 1
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=73.93 E-value=2.9 Score=33.08 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=18.7
Q ss_pred EEEcCCCHHHHHHhcCCCCcc
Q 015524 234 HIPFGASPQDVWTELGRPCGI 254 (405)
Q Consensus 234 ~I~~G~T~QDV~~eLG~P~~i 254 (405)
.|..|.|-++|...||+|..+
T Consensus 12 ~i~~GmTk~qV~~lLG~P~~~ 32 (88)
T 2yh9_A 12 KIRVGMTQQQVAYALGTPLMS 32 (88)
T ss_dssp TCCTTCBHHHHHHHHCSCSEE
T ss_pred hccCCCCHHHHHHHcCCCccc
Confidence 577899889999999999875
No 2
>2km7_A Small protein A; BAME, SMPA, BAM complex, OMP85, YAET, cell membrane, cell OU membrane, lipoprotein, membrane, palmitate, membrane protei; NMR {Escherichia coli} PDB: 2kxx_A
Probab=65.55 E-value=6 Score=32.30 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=18.6
Q ss_pred EEEcCCCHHHHHHhcCCCCcc
Q 015524 234 HIPFGASPQDVWTELGRPCGI 254 (405)
Q Consensus 234 ~I~~G~T~QDV~~eLG~P~~i 254 (405)
.|..|.|-++|...||+|..+
T Consensus 26 ~i~~GmTk~qV~~lLG~P~~~ 46 (102)
T 2km7_A 26 KIRVGMTQQQVAYALGTPLMS 46 (102)
T ss_dssp TCCTTCBHHHHHHHHCCCCCC
T ss_pred hccCCCCHHHHHHhcCCCccc
Confidence 677899889999999999875
No 3
>2pxg_A Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture; NMR {Xanthomonas axonopodis PV}
Probab=38.49 E-value=28 Score=29.17 Aligned_cols=21 Identities=33% Similarity=0.388 Sum_probs=18.2
Q ss_pred EEEcCCCHHHHHHhcCCCCcc
Q 015524 234 HIPFGASPQDVWTELGRPCGI 254 (405)
Q Consensus 234 ~I~~G~T~QDV~~eLG~P~~i 254 (405)
.|..|.|-++|...||.|...
T Consensus 25 ql~~GMTk~QV~~lLGtP~~~ 45 (118)
T 2pxg_A 25 QLQVGQSKQQVSALLGTPSIP 45 (118)
T ss_dssp TTCCCSCHHHHHHHHTSCCCC
T ss_pred HccCCCCHHHHHHHcCCCccc
Confidence 456789999999999999875
No 4
>4dm5_A Osmotically inducible lipoprotein OSME; unknown function; HET: MSE; 1.50A {Pseudomonas aeruginosa PAO1}
Probab=15.12 E-value=61 Score=26.90 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.2
Q ss_pred EcCCCHHHHHHhcCCCCcccc
Q 015524 236 PFGASPQDVWTELGRPCGIHQ 256 (405)
Q Consensus 236 ~~G~T~QDV~~eLG~P~~if~ 256 (405)
.=|.|-|+|+..+|+|..+..
T Consensus 25 ~~GMTk~qV~rigG~PsS~~~ 45 (103)
T 4dm5_A 25 EKGMSQQEVLRIGGTPSGTQK 45 (103)
T ss_dssp CTTCBHHHHHHHHCSCSEEEE
T ss_pred cCCCCHHHHHHhcCCCcceEE
Confidence 558899999999999988754
No 5
>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}
Probab=12.82 E-value=63 Score=31.36 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=17.8
Q ss_pred cCCCHHHHHHhcCCCCccc
Q 015524 237 FGASPQDVWTELGRPCGIH 255 (405)
Q Consensus 237 ~G~T~QDV~~eLG~P~~if 255 (405)
||++.++|...||.|+|+.
T Consensus 45 IG~~~~~v~~~~G~P~R~~ 63 (323)
T 4h0a_A 45 VGKDIKVLTSKFGQADRVY 63 (323)
T ss_dssp TTSBTHHHHHHHCSCSEEE
T ss_pred hCCCHHHHHHHhCCccccc
Confidence 6999999999999999985
No 6
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A
Probab=12.68 E-value=1.6e+02 Score=23.62 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=24.9
Q ss_pred CCCCccceEEEcCCCCeEEEecCCCC-eEEEEEEeeCC
Q 015524 62 EEPLKLDIIISFPDHGFHLRFDPWSQ-RLRLIEIFDIK 98 (405)
Q Consensus 62 ~~Pl~~~Ivi~lp~~GirL~Fd~~~Q-RL~lIEV~d~~ 98 (405)
.+|...-.+ .-|+. |.|.|+..-+ ++.-|.|.|.+
T Consensus 7 s~Pa~ga~v-~aP~~-v~L~Fse~v~~~~s~v~v~~~~ 42 (102)
T 2c9r_A 7 STPAEGSEG-AAPAK-IELHFSENLVTQFSGAKLVMTA 42 (102)
T ss_dssp EESCTTCEE-SCCSC-EEEEESSCCCGGGCEEEEEEEE
T ss_pred cCCCCcCEE-CCCCE-EEEEeCCCCccCccEEEEECCC
Confidence 457777777 66665 9999998543 66677777664
No 7
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A
Probab=12.39 E-value=4.7e+02 Score=22.76 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=34.2
Q ss_pred cHHHHHHHHHcCCCc-cceEEEEEcCCCCCccceEEEcCCCCeEEEecCCCCeEEEEEEeeCCc
Q 015524 37 PICEAFASIEQQPNI-YDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKR 99 (405)
Q Consensus 37 sL~~vl~~Lk~~~~~-~~~v~i~Ys~~~Pl~~~Ivi~lp~~GirL~Fd~~~QRL~lIEV~d~~~ 99 (405)
.+.++|..|+..... .....=.|.+ ..+.++.+.++++|| .|+.+|-+ |+-+-+.+
T Consensus 28 ~v~~~ir~L~~~~~~~~d~~~~~wg~----gq~~~L~v~~~tlrL-vD~~tk~~--L~~~pI~~ 84 (148)
T 3d8d_A 28 AVNNCIRQLSYHKNNLHDPMSGGWGE----GKDLLLQLEDETLKL-VEPQSQAL--LHAQPIIS 84 (148)
T ss_dssp HHHHHHHHHTTCCCCCCCTTSTTCST----TCEEEEEEETTEEEE-ECTTTCCE--EEEEEGGG
T ss_pred HHHHHHHHHHhccccccccccccccc----CceEEEEEcCCeEEE-ecCCCCce--EEEeeEEE
Confidence 378999999865421 1101011222 368999999999988 68877765 44444443
No 8
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Probab=12.16 E-value=1.3e+02 Score=23.67 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=18.1
Q ss_pred EeeeCCCCCcCCCcceeeeEEEeccCC
Q 015524 304 IMHTNYPGHADFNSYIKCNFIILGSDF 330 (405)
Q Consensus 304 ILHtN~PG~y~Fn~Y~RC~w~I~~~~~ 330 (405)
|.--|+|+.|. .-..|.|.|.....
T Consensus 16 i~SP~yP~~Yp--~~~~C~w~I~~~~g 40 (115)
T 3poj_A 16 ITSPDYPNPYP--KSSECSYTIDLEEG 40 (115)
T ss_dssp EECTTTTSCCC--TTCEEEEEEECCTT
T ss_pred EcCCCCCcCCc--CCCeEEEEEEcCCC
Confidence 33448898776 34679999998753
No 9
>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A
Probab=10.62 E-value=1.8e+02 Score=23.37 Aligned_cols=35 Identities=11% Similarity=0.160 Sum_probs=24.1
Q ss_pred CCCCccceEEEcCCCCeEEEecCCCC-eEEEEEEeeCC
Q 015524 62 EEPLKLDIIISFPDHGFHLRFDPWSQ-RLRLIEIFDIK 98 (405)
Q Consensus 62 ~~Pl~~~Ivi~lp~~GirL~Fd~~~Q-RL~lIEV~d~~ 98 (405)
.+|...-.+ .-|+. |.|.|+..-+ ++.-|+|.|-+
T Consensus 8 s~Pa~ga~v-~aP~~-V~L~Fse~v~~~~s~v~v~~~~ 43 (104)
T 1lyq_A 8 SVPQADSAV-AAPEK-IQLNFSENLTVKFSGAKLTMTG 43 (104)
T ss_dssp EESCTTCEE-SCCCC-EEEEESSCCCGGGCEEEEEEEE
T ss_pred cCCCCcCEE-CCCCE-EEEEeCCCCcccccEEEEECCC
Confidence 457777777 66665 9999998544 45666666654
No 10
>1f46_A Cell division protein ZIPA; transmembrane, inner membrane, cell cycle; 1.50A {Escherichia coli} SCOP: d.129.4.1 PDB: 1f47_B 1s1j_A* 1s1s_A* 1y2g_A* 1f7w_A 1f7x_A 1y2f_A*
Probab=10.10 E-value=85 Score=26.89 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=19.5
Q ss_pred CCCCccCCCCcEEEEeeCceEEEEeCCc
Q 015524 128 TFPGVYDKERSVYMLFYPGLSFAFPIPA 155 (405)
Q Consensus 128 TyPG~y~~~~~~Y~LsYpGlaF~Fpi~~ 155 (405)
+-||.||++ .=..++|||+|.+.+|.
T Consensus 61 ~~pg~Fd~~--~~~~~t~gvtlfl~lP~ 86 (140)
T 1f46_A 61 VKPGTFDPE--MKDFTTPGVTIFMQVPS 86 (140)
T ss_dssp STTCCCCTT--CCSCEESEEEEEEEECS
T ss_pred CCCCCCCcc--hhcCccCcEEEEEECCC
Confidence 457777765 22458899999999985
Done!