BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015527
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 4/163 (2%)
Query: 57 DVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
DV+ L NF + G ++V F+A WC +K+LAPE+ AAA LKG L VD
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDC 61
Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEA 173
+ +Y + YPTL +F G + G RT D I + ++++ + + T +E
Sbjct: 62 TANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEF 121
Query: 174 ERILTVESKLVLGFLHD-LEGMESEELAAASKLHSDVNFYQTT 215
++ ++ + ++GF D SE L AAS L + F T
Sbjct: 122 KKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTN 164
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 64 KNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM--VDAYLEKDLA 120
+NF E + +N++V++ FYA WC K L P++ + L + ++V+ +DA D+
Sbjct: 360 ENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDA-TANDVP 418
Query: 121 KEYNILAYPTLYL 133
Y + +PT+Y
Sbjct: 419 SPYEVRGFPTIYF 431
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD---LVMVDAY 114
V+ L NF+E + ++ ++V FYA WC K LAPE+A AA LK E L VDA
Sbjct: 9 VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT 68
Query: 115 LEKDLAKEYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREK 159
E DLA++Y + YPT+ F G ++ R D I W++++
Sbjct: 69 EESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKR 115
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEA---DLVMVDAYLEK 117
L +NF E + ++V FYA WC KKLAPE+ AAK L + L VDA E
Sbjct: 135 LTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAET 194
Query: 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTR 149
DLAK +++ YPTL +F G R + + G R +
Sbjct: 195 DLAKRFDVSGYPTLKIFRKG-RPYDYNGPREK 225
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV---DAY 114
V+ LN NF F+ V++ FYA WC K+ APE+ A +LK + + V DA
Sbjct: 17 VLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT 76
Query: 115 LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
LA +++ YPT+ + G + + G RT++ I A VRE
Sbjct: 77 SASVLASRFDVSGYPTIKILKKG-QAVDYEGSRTQEEIVAKVRE 119
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 68.2 bits (165), Expect = 8e-12, Method: Composition-based stats.
Identities = 42/111 (37%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEA---DLVMVDAYL 115
+SL NF + + ++V FYA WC KKLAPE+ AAK L + L VDA
Sbjct: 10 LSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATE 69
Query: 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYS 166
+ DLAK +++ YPTL +F G R F + G R + I ++ E+ G S
Sbjct: 70 QTDLAKRFDVSGYPTLKIFRKG-RPFDYNGPREKYGIVDYMIEQSGSGPSS 119
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 65.1 bits (157), Expect = 6e-11, Method: Composition-based stats.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 57 DVVSLNGKNFSEFMGKNRNV-MVMFYANWCYWSKKLAPEFAAAA----KMLKGEADLVMV 111
DV+ L +F + + + +V MV FYA WC K L PE+AAAA + KG+ L V
Sbjct: 8 DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAV 67
Query: 112 DAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR-DVIS 153
DA + + LA Y I +PT+ +F G + G RTR D++S
Sbjct: 68 DATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVS 110
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 127/296 (42%), Gaps = 49/296 (16%)
Query: 55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGE------ADL 108
++ SL+ +N E + +V FYA+WC +S+ L P F A+ ++K E
Sbjct: 4 GSEITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVF 63
Query: 109 VMVDAYLEKDLAKEYNILAYPTLYLFVAG-VRQFQFFGERTRDVISAWVREKMT------ 161
VD D+A+ Y I YPTL LF G + ++ G+R+ ++ ++R++ +
Sbjct: 64 ARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQEI 123
Query: 162 LGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEEL----AAASKLHSDVNFYQTTSA 217
ITT D ++R ++G+ E +S+ A+ LH D F +
Sbjct: 124 RDLAEITTLDRSKRN-------IIGY---FEQKDSDNYRVFERVANILHDDCAFL-SAFG 172
Query: 218 DVAE--------FFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVV 269
DV++ + P P ++L G T F + N++ PLV
Sbjct: 173 DVSKPERYSGDNIIYKPPGHSAPDXVYL----GAXTNFDVTY------NWIQDKCVPLVR 222
Query: 270 TLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKAL---KGKLLHVYVEMN 322
+T N + + ++ L LF ++ + + EVA+ L KG + ++ + +
Sbjct: 223 EITFENGEELTEEGLPFLILFHXKEDTESLEIFQNEVARQLISEKGTINFLHADCD 278
>pdb|2K18|A Chain A, Solution Structure Of Bb' Domains Of Human Protein
Disulfide Isomerase
Length = 228
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 107/225 (47%), Gaps = 14/225 (6%)
Query: 162 LGTYSITTTDE---AERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSAD 218
LG+ + TT + AE ++ V+GF D+E +++ A++ D+ F T+++D
Sbjct: 3 LGSPAATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSD 62
Query: 219 VAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQF 278
V F + K ++F + G+ F + T+ + +F+ H + PLV+ T A
Sbjct: 63 V---FSKYQLDKDGVVLFKKFDEGRNN-FEGEVTKENLLDFIKHNQLPLVIEFTEQTAPK 118
Query: 279 VF-QDPRKQLWLFAPAYGS--DKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFG 335
+F + + + LF P S D + F+ A++ KGK+L ++++ + +R+ + FG
Sbjct: 119 IFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTD-NQRILEFFG 177
Query: 336 VSGN---APRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL 377
+ A R+I K + ELT I F FLE K+
Sbjct: 178 LKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKI 222
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 57 DVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
DV+ L NF + G ++V F+A WC K+LAPE+ AAA LKG L VD
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDC 61
Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159
+ +Y + YPTL +F G + G RT D I + ++++
Sbjct: 62 TANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQ 107
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 100/211 (47%), Gaps = 11/211 (5%)
Query: 173 AERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRP 232
AE ++ V+GF D+E +++ A++ D+ F T+++DV F + K
Sbjct: 28 AESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDV---FSKYQLDKDG 84
Query: 233 ALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVF-QDPRKQLWLFA 291
++F + G+ F + T+ + +F+ H + PLV+ T A +F + + + LF
Sbjct: 85 VVLFKKFDEGRNN-FEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFL 143
Query: 292 PAYGS--DKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGN---APRVIAY 346
P S D + F+ A++ KGK+L ++++ + +R+ + FG+ A R+I
Sbjct: 144 PKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTD-NQRILEFFGLKKEECPAVRLITL 202
Query: 347 SARDAKKYVLNGELTLSSIKSFGEEFLEDKL 377
K + ELT I F FLE K+
Sbjct: 203 EEEMTKYKPESEELTAERITEFCHRFLEGKI 233
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 58 VVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
V L GKNF + + +NV V FYA WC K+LAP + + K ++V+
Sbjct: 251 VKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST 310
Query: 117 KDLAKEYNILAYPTLYLFVAGVRQ--FQFFGERTRD 150
+ + + ++PTL F A + + GERT D
Sbjct: 311 ANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLD 346
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV---DAYLEK 117
LN NF F+ V++ FYA WC K+ APE+ A LK + V DA
Sbjct: 22 LNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSAS 81
Query: 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
LA ++++ YPT+ + G + + G RT++ I A VRE
Sbjct: 82 MLASKFDVSGYPTIKILKKG-QAVDYDGSRTQEEIVAKVRE 121
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDAYLE 116
VV L +F+E++ + V+ F+A WC K +APE+ AA+ L + L +D
Sbjct: 16 VVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTEN 75
Query: 117 KDLAKEYNILAYPTLYLFVAG--VRQFQFFGERTRDVI 152
+DL E+NI +P+L +F + G RT + I
Sbjct: 76 QDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAI 113
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 58 VVSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA--Y 114
V L GKN E + ++V+V++YA WC K+LAP + A V++ +
Sbjct: 360 VFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDH 419
Query: 115 LEKDLAKEYNILAYPTLYLFVAGVR--QFQFFGERTRDVISAWVREK 159
E D+ + I YPT+ L+ G + + G R+ D + +++E
Sbjct: 420 TENDV-RGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKEN 465
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
++V F+A WC +++AP+F AAA L G+ L +D +A + I P LF
Sbjct: 67 LLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFH 126
Query: 136 AGVRQFQFFGERTRDVISAWVREKM 160
G + G R + +VR K+
Sbjct: 127 KGRELARAAGARPASELVGFVRGKL 151
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 63 GKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM--VDAYLEKDL 119
GK F M ++V++ FYA WC K+L P + + K KG+ DLV+ +DA
Sbjct: 14 GKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDIT 73
Query: 120 AKEYNILAYPTLYLFVAGVRQ--FQF-FGERTRDVISAWVREKMT 161
+Y + +PT+Y +G ++ +F G R + +S ++ E T
Sbjct: 74 NDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHAT 118
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 41/85 (48%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
+++MF +WC KK+ P F A ++G+ +DA + E NI P+L LFV
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMAELNIRTLPSLALFV 79
Query: 136 AGVRQFQFFGERTRDVISAWVREKM 160
G+ + F G + + W+ +
Sbjct: 80 DGMIREVFSGTMNKSDLRYWINNNI 104
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 55 AKDVVSLNGKNFS-EFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
+ DV+ L NF+ E + + +V FYA WC ++L PE+ AA LK + V+A
Sbjct: 16 SDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNA 75
Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQ-FFGERTRDVI 152
+ L +Y + +PT+ +F A + + + G RT + I
Sbjct: 76 DKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAI 115
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117
V LN KNF EF+ KN+ V+V F+A WC LAP A + ++ +
Sbjct: 8 VKHLNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYP-QVAFGKLNTEESQ 66
Query: 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVI 152
D+A Y I++ PT+ F G Q G R+ I
Sbjct: 67 DIAMRYGIMSLPTIMFFKNGELVDQILGAVPREEI 101
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 58 VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
+ L K+F + + N +V FYA WC KKL+ F AAK L G + V+ L
Sbjct: 19 ISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLN 78
Query: 117 KD--LAKEYNILAYPTLYLF 134
K+ L +Y++ +PTL +F
Sbjct: 79 KNKALCAKYDVNGFPTLMVF 98
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKM----LKGEADLVMVDA 113
V++L NF + + + + FYA WC K LAP + +K L G + VD
Sbjct: 7 VLALTENNFDDTIAEGIT-FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAG-VKIAEVDC 64
Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156
E+++ +Y++ YPTL LF G + + G R D + +V
Sbjct: 65 TAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 107
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKM----LKGEADLVMVDA 113
V++L NF + + + + FYA WC K LAP + +K L G + VD
Sbjct: 9 VLALTENNFDDTIAEGIT-FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAG-VKIAEVDC 66
Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156
E+++ +Y++ YPTL LF G + + G R D + +V
Sbjct: 67 TAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 109
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKM----LKGEADLVMVDA 113
V++L NF + + + + FYA WC K LAP + +K L G + VD
Sbjct: 2 VLALTENNFDDTIAEGIT-FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAG-VKIAEVDC 59
Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156
E+++ +Y++ YPTL LF G + + G R D + +V
Sbjct: 60 TAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 102
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115
KD L+G+ ++ GK V++ F+A WC K ++P+ + ++ VD
Sbjct: 6 KDKADLDGQ-LTKASGKL--VVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE 62
Query: 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFG---ERTRDVISA 154
+D+A EYNI + PT GV+ +F G +R DVI A
Sbjct: 63 CEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKA 104
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115
KD L+G+ ++ GK V++ F+A WC K ++P+ + ++ VD
Sbjct: 11 KDKADLDGQ-LTKASGKL--VVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE 67
Query: 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFG---ERTRDVISA 154
+D+A EYNI + PT GV+ +F G +R DVI A
Sbjct: 68 CEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKA 109
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 64 KNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM--VDAYLEKDLA 120
+NF E + +N++V++ FYA WC K L P++ + L + ++V+ +DA D+
Sbjct: 35 ENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDA-TANDVP 93
Query: 121 KEYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREKMTLGTYS 166
Y + +PT+Y A + ++ G R ++++ + T G S
Sbjct: 94 SPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATSGPSS 141
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 61 LNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL 119
L GKNF + + +NV V FYA WC K+LAP + + K ++V+ +
Sbjct: 12 LVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE 71
Query: 120 AKEYNILAYPTLYLFVAGVRQ--FQFFGERTRD 150
+ + ++PTL F A + + GERT D
Sbjct: 72 VEAVKVHSFPTLKFFPASADRTVIDYNGERTLD 104
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD 118
+ + +NF E +G++ V+V F+A WC + +AP AK +G+ + +D
Sbjct: 5 IEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPK 64
Query: 119 LAKEYNILAYPTLYLFVAG 137
A Y + + PT+ LF G
Sbjct: 65 TAXRYRVXSIPTVILFKDG 83
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD 118
+ + +NF E +G++ V+V F+A WC + +AP AK +G+ + +D
Sbjct: 4 IEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPK 63
Query: 119 LAKEYNILAYPTLYLFVAG 137
A Y + + PT+ LF G
Sbjct: 64 TAXRYRVXSIPTVILFKDG 82
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKK------LAPEFAAAAKMLKGEADLV 109
+++V++N N + + ++ V+FY +WS++ L P + A G+ L
Sbjct: 7 QNIVNINESNLQQTLEQSXTTPVLFY----FWSERSQHCLQLTPVLESLAAQYHGQFILA 62
Query: 110 MVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156
+D E+ +A ++ + A PT+YLF G F G + + I A +
Sbjct: 63 KLDCDAEQXIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALL 109
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK 121
NGK+ + V++ F A+WC + +AP FA AK G A + VD KD+A+
Sbjct: 23 NGKDTGKL------VIIDFTASWCGPCRVIAPVFAEYAKKFPG-AIFLKVDVDELKDVAE 75
Query: 122 EYNILAYPTLYLFVAGVRQFQFFGERTRDV 151
YN+ A PT G + G R D+
Sbjct: 76 AYNVEAMPTFLFIKDGEKVDSVVGGRKDDI 105
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136
+V F+A WC SK +AP A +G+AD++ +D A +Y +++ PTL +F
Sbjct: 24 LVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 137 G 137
G
Sbjct: 84 G 84
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 48/109 (44%)
Query: 53 LYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD 112
L+ +V++ + + + + ++ F+A WC + AP FA A G+ V V+
Sbjct: 35 LFDGEVINATAETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVN 94
Query: 113 AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMT 161
E L+ + I + PT+ L+ G G + W+ E+++
Sbjct: 95 TEAEPALSTRFRIRSIPTIXLYRNGKXIDXLNGAVPKAPFDNWLDEQLS 143
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 57 DVVSLNGKNFSEFMGKNR-NVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115
+V +N ++ EF+ ++ VMV F+A WC SK +AP AK G+ + ++
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMT 161
+A +YNI + PT+ F G R+ G + ++ + + ++
Sbjct: 61 APGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYLS 106
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKK------LAPEFAAAAKMLKGEADLV 109
+++V++N N + + ++ V+FY +WS++ L P + A G+ L
Sbjct: 7 ENIVNINESNLQQVLEQSMTTPVLFY----FWSERSQHCLQLTPILESLAAQYNGQFILA 62
Query: 110 MVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156
+D E+ +A ++ + A PT+YLF G F G + + I A +
Sbjct: 63 KLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALL 109
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
V++ F A+WC + +AP FA AK G A + VD K++A++YN+ A PT
Sbjct: 39 VIIDFTASWCGPCRFIAPVFAEYAKKFPG-AVFLKVDVDELKEVAEKYNVEAMPTFLFIK 97
Query: 136 AGVRQFQFFGERTRDVISAWVR 157
G + G R D+ + V+
Sbjct: 98 DGAEADKVVGARKDDLQNTIVK 119
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117
V +L +NF +V F+A W S+ L PE A+ +L G+ + +D + +
Sbjct: 442 VTTLGPQNFP--ASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHE 499
Query: 118 DLAKEYNILAYPTLYLF 134
L YNI AYPT +F
Sbjct: 500 GLCNMYNIQAYPTTVVF 516
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 90/207 (43%), Gaps = 22/207 (10%)
Query: 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++++L + F + V FY+ S LAP + AK + G + V+ +
Sbjct: 117 EIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDD 176
Query: 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAW----VREKMT-LGT------- 164
+ L + + +YP+L++F +G+ ++ G+R+++ + A+ VR +T L T
Sbjct: 177 RMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELSTGNFVNAI 236
Query: 165 ---------YSITTTDEAERILTVESKLVL-GFLHDLEGMESEELAAASKLHSDVNFYQT 214
+ IT + E LT +++L L G L L + + A L ++ +
Sbjct: 237 ETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTAS 296
Query: 215 TSADVAEFFHIHPKSKRPALIFLHLEA 241
T+A ++ + K L L+A
Sbjct: 297 TTAYFPPGATLNDREKSSVLFLNSLDA 323
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 8/144 (5%)
Query: 58 VVSLNGKNFSEFMGKNRN---VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY 114
VVSL F+E + + ++ MV FY+ W + S+ L PE+ A+ L G ++ VD
Sbjct: 545 VVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCG 604
Query: 115 LEKDLAKEYNILAYPTLYLF---VAGVRQFQFFGERTRDVIS--AWVREKMTLGTYSITT 169
+ N+ YP + + + Q+ + RD S +W + + +T
Sbjct: 605 QYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTP 664
Query: 170 TDEAERILTVESKLVLGFLHDLEG 193
E++L ++ V+ F G
Sbjct: 665 QTFNEKVLQGKTHWVVDFYAPWSG 688
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 59 VSLNGKNFSE--FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
+ L + F+E GK V V FYA W S+ APEF A+M+KG+ VD
Sbjct: 660 IDLTPQTFNEKVLQGKTHWV-VDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAY 718
Query: 117 KDLAKEYNILAYPTLYLF 134
++ I AYP++ L+
Sbjct: 719 PQTCQKAGIKAYPSVKLY 736
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Query: 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131
KN+ V+V F+A WC K +AP F ++ K +A V VD ++ A++YNI A PT
Sbjct: 23 KNKLVVVDFFATWCGPCKTIAPLFKELSE--KYDAIFVKVDVDKLEETARKYNISAMPT- 79
Query: 132 YLFVAGVRQFQFFGERTRDVISA 154
F+A ++ GE+ DV+ A
Sbjct: 80 --FIA-IKN----GEKVGDVVGA 95
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 59 VSLNGKNFSE--FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
+ L + F+E GK V V FYA WC + APEF A+M+KG+ VD
Sbjct: 6 IDLTPQTFNEKVLQGKTHWV-VDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAY 64
Query: 117 KDLAKEYNILAYPTLYLF 134
++ I AYP++ L+
Sbjct: 65 PQTCQKAGIKAYPSVKLY 82
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Query: 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131
KN+ V+V F+A WC K +AP F ++ K +A V VD ++ A++YNI A PT
Sbjct: 32 KNKLVVVDFFATWCGPCKTIAPLFKELSE--KYDAIFVKVDVDKLEETARKYNISAMPT- 88
Query: 132 YLFVAGVRQFQFFGERTRDVISA 154
F+A ++ GE+ DV+ A
Sbjct: 89 --FIA-IKN----GEKVGDVVGA 104
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 46/100 (46%)
Query: 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA 120
L +NF E + N+ V+V +A WC P + A+ KG+A ++ + +A
Sbjct: 9 LTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIA 68
Query: 121 KEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160
+Y++L PT +FV G G D + + V + +
Sbjct: 69 DKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKYL 108
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 57 DVVSLNGKNFSEFMGKNR-NVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115
+V +N ++ EF+ ++ VMV F+A WC K +AP AK G+ + ++
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS 153
+A +YNI + PT+ F G R+ G + ++
Sbjct: 61 APGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLT 98
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 51/100 (51%)
Query: 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++++L + F + V FY+ C LAP + AK + G + V+ +
Sbjct: 98 EIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDD 157
Query: 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156
+ L + + +YP+L++F +G+ ++ G+R+++ + A+
Sbjct: 158 RMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFA 197
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136
+V F+A WC K +AP A +G+AD++ +D A +Y +++ PTL +F
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 137 G 137
G
Sbjct: 84 G 84
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136
+V F+A WC K +AP A +G+AD++ +D A +Y +++ PTL +F
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 137 G 137
G
Sbjct: 83 G 83
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%)
Query: 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117
VV + K F++ + +V F+A WC + ++P A+ G +V V+
Sbjct: 35 VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHP 94
Query: 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVI 152
LA Y + + PTL LF G + G R V+
Sbjct: 95 GLAARYGVRSVPTLVLFRRGAPVATWVGASPRRVL 129
>pdb|2BJX|A Chain A, Protein Disulfide Isomerase
pdb|1BJX|A Chain A, Human Protein Disulfide Isomerase, Nmr, 24 Structures
Length = 110
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 173 AERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRP 232
AE ++ V+GF D+E +++ A++ D+ F T+++DV F + K
Sbjct: 11 AESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDV---FSKYQLDKDG 67
Query: 233 ALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNA 276
++F + G+ F + T+ + +F+ H + PLV+ T A
Sbjct: 68 VVLFKKFDEGR-NNFEGEVTKENLLDFIKHNQLPLVIEFTEQTA 110
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC W K +AP A +G+ + ++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136
+V F+A WC K +AP A +G+AD++ +D A +Y +++ PTL +F
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 137 G 137
G
Sbjct: 84 G 84
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 38/83 (45%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
V+V F+A WC K L P G+ + VD DLA EY + A PT+
Sbjct: 34 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93
Query: 136 AGVRQFQFFGERTRDVISAWVRE 158
G +F G + D + A++++
Sbjct: 94 NGDVVDKFVGIKDEDQLEAFLKK 116
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 61 LNGKNFSEFMGKNR-NVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL 119
+N ++ EF+ ++ VMV F+A WC K +AP AK G+ + ++ +
Sbjct: 4 VNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGI 63
Query: 120 AKEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS 153
A +YNI + PT+ F G R+ G + ++
Sbjct: 64 ATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLT 97
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 67 SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL 126
++ + N+ V+V F+A WC SK +AP A + + +D + A+ + ++
Sbjct: 21 TDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVV 80
Query: 127 AYPTLYLFVAG 137
+ PTL LF G
Sbjct: 81 SIPTLILFKDG 91
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 46/96 (47%)
Query: 59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD 118
++L NF + + ++ V+V F+A WC + +AP A+ + + ++ +
Sbjct: 3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE 62
Query: 119 LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISA 154
++ I++ PTL LF G Q G + ++ + A
Sbjct: 63 TTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEA 98
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117
V+ L+ KNF F+ + +V F+A WC LAP A+ + +++
Sbjct: 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP-QVGFGKLNSDENP 59
Query: 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLG 163
D+A Y +++ PT+ F G + G R+ I +R K LG
Sbjct: 60 DIAARYGVMSLPTVIFFKDGEPVDEIIGAVPREEIE--IRIKNLLG 103
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 46/96 (47%)
Query: 59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD 118
++L NF + + ++ V+V F+A WC + +AP A+ + + ++ +
Sbjct: 3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE 62
Query: 119 LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISA 154
++ I++ PTL LF G Q G + ++ + A
Sbjct: 63 TTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEA 98
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 51 PLLYAKDVVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAA-----AAKMLKG 104
PL V + KN++E + ++V++ FYA WC K LAP++ A K
Sbjct: 2 PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKD 61
Query: 105 EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR--QFQFFGERTRDVISAWVRE 158
+ VDA D+ E I +PT+ L+ AG + + G RT + + ++ E
Sbjct: 62 RVVIAKVDA-TANDVPDE--IQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE 114
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131
K R ++V F+A WC + +AP+ A AK + E + VD ++ A +Y++ A PT
Sbjct: 18 KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEEAAAKYSVTAMPTF 76
Query: 132 YLFVAGVRQFQFFGERTRDVISAWVREK 159
G +F G + R K
Sbjct: 77 VFIKDGKEVDRFSGANETKLRETITRHK 104
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 64 KNFSEF---MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA 120
K SEF + +++ V+V FYA WC SK +AP ++ +AD +D D+A
Sbjct: 12 KTASEFDSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYP-QADFYKLDVDELGDVA 70
Query: 121 KEYNILAYPTLYLFVAG 137
++ + A PTL LF G
Sbjct: 71 QKNEVSAMPTLLLFKNG 87
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 67 SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL 126
++ + N+ V+V F+A WC K +AP A + + +D + A+ + ++
Sbjct: 24 TDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVV 83
Query: 127 AYPTLYLFVAG 137
+ PTL LF G
Sbjct: 84 SIPTLILFKDG 94
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 67 SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL 126
++ + N+ V+V F+A WC K +AP A + + +D + A+ + ++
Sbjct: 19 TDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVV 78
Query: 127 AYPTLYLFVAG 137
+ PTL LF G
Sbjct: 79 SIPTLILFKDG 89
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
V+ + +NF E + ++ V+V F+A WC + +AP AK +G+ +V V+
Sbjct: 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDEN 62
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
+ A +Y I + PTL LF G
Sbjct: 63 PNTAAQYGIRSIPTLLLFKNG 83
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY 123
++F + G + ++V F A+WC K +AP FA AK + VD K +A+E+
Sbjct: 17 EHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELKAVAEEW 75
Query: 124 NILAYPTLYLFVAG 137
N+ A PT G
Sbjct: 76 NVEAMPTFIFLKDG 89
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 45/96 (46%)
Query: 59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD 118
++L NF + + + V+V F+A WC + +AP A+ + + ++ +
Sbjct: 3 MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE 62
Query: 119 LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISA 154
++ I++ PTL LF G Q G + ++ + A
Sbjct: 63 TTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEA 98
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132
++ +V FYA+WC K +AP AK G+ + VD E++LA + I + P++
Sbjct: 38 DKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSI- 96
Query: 133 LFV 135
LF+
Sbjct: 97 LFI 99
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 45/96 (46%)
Query: 59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD 118
++L NF + + + V+V F+A WC + +AP A+ + + ++ +
Sbjct: 3 MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE 62
Query: 119 LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISA 154
++ I++ PTL LF G Q G + ++ + A
Sbjct: 63 TTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEA 98
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 68 EFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILA 127
+++G ++ +V FYA+WC K +AP +K G+ + V+ E +LA+++ I +
Sbjct: 47 KYLG-DKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQS 105
Query: 128 YPTLYL 133
PT++
Sbjct: 106 IPTIWF 111
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 68 EFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILA 127
+++G ++ +V FYA+WC K +AP +K G+ + V+ E +LA+++ I
Sbjct: 47 KYLG-DKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQG 105
Query: 128 YPTLYL 133
PT++
Sbjct: 106 IPTIWF 111
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 64 KNFSEF---MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA 120
K SEF + +++ V+V FYA WC K +AP ++ +AD +D D+A
Sbjct: 6 KTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDVA 64
Query: 121 KEYNILAYPTLYLFVAG 137
++ + A PTL LF G
Sbjct: 65 QKNEVSAMPTLLLFKNG 81
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 64 KNFSEF---MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA 120
K SEF + +++ V+V FYA WC K +AP ++ +AD +D D+A
Sbjct: 12 KTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDVA 70
Query: 121 KEYNILAYPTLYLFVAG 137
++ + A PTL LF G
Sbjct: 71 QKNEVSAMPTLLLFKNG 87
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGE-ADLVMVDAYLEKDLAKEYN 124
F + G ++ V++ F+A WC K + P F + G+ VD + +A+E
Sbjct: 26 FKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVG 85
Query: 125 ILAYPTLYLFVAG 137
I A PT F G
Sbjct: 86 IRAMPTFVFFKNG 98
>pdb|1VRS|D Chain D, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|E Chain E, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|F Chain F, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
Length = 134
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD------LAKEYN 124
K + VM+ YA+WC SK+ + ++ K AD V++ A + + L K N
Sbjct: 29 AKGKPVMLDLYADWCVASKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLN 88
Query: 125 ILAYPTLYLF 134
+L PT+ F
Sbjct: 89 VLGLPTILFF 98
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 37.4 bits (85), Expect = 0.015, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK--DL 119
N F + +N +++ FYA WC K + P K+++ D+ V +++ D+
Sbjct: 19 NLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHL---TKLIQAYPDVRFVKCDVDESPDI 75
Query: 120 AKEYNILAYPTLYL 133
AKE + A PT L
Sbjct: 76 AKECEVTAMPTFVL 89
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 37.4 bits (85), Expect = 0.015, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 37/70 (52%)
Query: 68 EFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILA 127
+ + ++ V+V F+A WC +++AP A A + ++V ++ A +Y +++
Sbjct: 18 DVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMS 77
Query: 128 YPTLYLFVAG 137
PTL ++ G
Sbjct: 78 IPTLNVYQGG 87
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 37.4 bits (85), Expect = 0.016, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 77 MVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
M+ FYA WC + L PE+ + A+ + E ++ VD + L+ + I A PT+Y
Sbjct: 26 MIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCK 85
Query: 136 AG-VRQFQFFGERTRDVISAWVREK 159
G R++Q G RT+ ++ +K
Sbjct: 86 DGEFRRYQ--GPRTKKDFINFISDK 108
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 37.0 bits (84), Expect = 0.021, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC SK +AP A +G+ + ++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 36.6 bits (83), Expect = 0.023, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC +K +AP A +G+ + ++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|3BJ5|A Chain A, Alternative Conformations Of The X Region Of Human Protein
Disulphide- Isomerase Modulate Exposure Of The Substrate
Binding B' Domain
Length = 147
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 266 PLVVTLTIHNAQFVFQ-DPRKQLWLFAPAYGSD--KVILTFEEVAKALKGKLLHVYVEMN 322
PLV+ T A +F + + + LF P SD + F+ A++ KGK+L +++ +
Sbjct: 14 PLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSD 73
Query: 323 SEGVGRRVSQEFGVSGN---APRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL 377
+R+ + FG+ A R+I K + ELT I F FLE K+
Sbjct: 74 HTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKI 130
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 36.2 bits (82), Expect = 0.033, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 54 YAKDVVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD 112
++ ++ L +F ++ + + ++V F+A WC +K +AP A +G+ + ++
Sbjct: 20 HSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLN 79
Query: 113 AYLEKDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 80 IDQNPGTAPKYGIRGIPTLLLFKNG 104
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC K +AP A +G+ + ++
Sbjct: 14 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 73
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 74 PGTAPKYGIRGIPTLLLFKNG 94
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 36.2 bits (82), Expect = 0.038, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136
+V F+A C K +AP A +G+AD++ +D A +Y +++ PTL +F
Sbjct: 23 LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 137 G 137
G
Sbjct: 83 G 83
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD------LAKEYN 124
K + VM+ YA+WC K+ + ++ K AD V++ A + + L K N
Sbjct: 29 AKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLN 88
Query: 125 ILAYPTLYLF 134
+L PT+ F
Sbjct: 89 VLGLPTILFF 98
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD------LAKEYN 124
K + VM+ YA+WC K+ + ++ K AD V++ A + + L K N
Sbjct: 26 AKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLN 85
Query: 125 ILAYPTLYLF 134
+L PT+ F
Sbjct: 86 VLGLPTILFF 95
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 70 MGKNRNVMVMFYANWCYWSKKLAP---EFAAAAKMLKGEADLVMVDAYLEKD--LAKEYN 124
+G + V F+A+WC + AP E A K + +L ++D E + + +E+N
Sbjct: 27 LGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFN 86
Query: 125 ILAYPTLYLFVA 136
I +PT+ F A
Sbjct: 87 IAGFPTVRFFQA 98
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 35.4 bits (80), Expect = 0.057, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L ++F ++ + + ++V F+A WC K +AP A +G+ + ++
Sbjct: 4 IIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 35.4 bits (80), Expect = 0.057, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC K +AP A+ +G+ + ++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 35.4 bits (80), Expect = 0.058, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 33/81 (40%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
V+V F+A WC K + P K G+ + V+ + Y + + PTL L
Sbjct: 23 VLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVR 82
Query: 136 AGVRQFQFFGERTRDVISAWV 156
G + G + + AWV
Sbjct: 83 DGKVIDKKVGALPKSQLKAWV 103
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 35.4 bits (80), Expect = 0.060, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC K +AP A +G+ + ++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 35.4 bits (80), Expect = 0.063, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 55 AKDVVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
++ ++ L +F ++ + + ++V F+A WC K +AP A +G+ + ++
Sbjct: 1 SEKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 114 YLEKDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 35.0 bits (79), Expect = 0.067, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC K +AP A +G+ + ++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I + PTL LF G
Sbjct: 64 PGTAPKYGIRSIPTLLLFKNG 84
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 35.0 bits (79), Expect = 0.068, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC K +AP A +G+ + ++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 9/128 (7%)
Query: 60 SLNGKNFSEFMG---------KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM 110
SLNG + EF + V+V FY+ C + K P F AK A
Sbjct: 2 SLNGSSIIEFEDXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGR 61
Query: 111 VDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTT 170
++ A++Y + PT F G ++ G+ ++ VR+ + G I +
Sbjct: 62 INIATNPWTAEKYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDXLQHGEECIRKS 121
Query: 171 DEAERILT 178
+ +T
Sbjct: 122 TPVGQDIT 129
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
V++ F A+WC S+ +AP FA AK A + VD K +A+++++ A PT
Sbjct: 40 VVIDFTASWCGPSRIMAPVFADLAKKFPN-AVFLKVDVDELKPIAEQFSVEAMPTFLFMK 98
Query: 136 AGVRQFQFFGERTRDVISAWVREKMT 161
G +D + ++E++T
Sbjct: 99 EG---------DVKDRVVGAIKEELT 115
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 35.0 bits (79), Expect = 0.085, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
V+ F+A WC SK +AP + + + +V +D ++ A +Y +++ PTL +
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLK 79
Query: 136 AG 137
G
Sbjct: 80 DG 81
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 34.7 bits (78), Expect = 0.088, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC K +AP A +G+ + ++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 34.7 bits (78), Expect = 0.088, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC K +AP A +G+ + ++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 34.7 bits (78), Expect = 0.088, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC K +AP A +G+ + ++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 34.7 bits (78), Expect = 0.088, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC K +AP A +G+ + ++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 34.7 bits (78), Expect = 0.088, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC K +AP A +G+ + ++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.7 bits (78), Expect = 0.088, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC K +AP A +G+ + ++
Sbjct: 4 IIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 34.7 bits (78), Expect = 0.088, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC K +AP A +G+ + ++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 34.7 bits (78), Expect = 0.090, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
V+ F+A WC SK +AP + + + +V +D ++ A +Y +++ PTL +
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLK 79
Query: 136 AG 137
G
Sbjct: 80 DG 81
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 34.7 bits (78), Expect = 0.090, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNI 125
F + +N V+V F+A WC K++AP + +K + + VD ++ ++ NI
Sbjct: 19 FDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENI 77
Query: 126 LAYPTLYLFVAG 137
+ PT ++ G
Sbjct: 78 TSMPTFKVYKNG 89
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 34.7 bits (78), Expect = 0.093, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
V+V F+A WC + +AP A K + V ++ ++A EY I + PT+ +F
Sbjct: 22 VLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFK 81
Query: 136 AG 137
G
Sbjct: 82 GG 83
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 34.7 bits (78), Expect = 0.096, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC K +AP A +G+ + ++
Sbjct: 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 64
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 65 PGTAPKYGIRGTPTLLLFKNG 85
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC K +AP A +G+ + ++
Sbjct: 4 IIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
++V F+A WC K +AP A +G+ + ++ A +Y I PTL LF
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 136 AG 137
G
Sbjct: 83 NG 84
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC K +AP A +G+ + ++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC K +AP A +G+ + ++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132
++ V+V F A WC SK + P F + ++ + VD +D+A E + + PT
Sbjct: 20 DKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDSQDVASESEVKSMPTFQ 78
Query: 133 LFVAGVRQFQFFG 145
F G + +F G
Sbjct: 79 FFKKGQKVGEFSG 91
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 55 AKDVVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
+K V+++ F SE + + V+V F+A+WC + ++P AA +V ++
Sbjct: 6 SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEI 65
Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS 153
K+Y + P L L V+ Q + T VIS
Sbjct: 66 DPNPTTVKKYKVEGVPALRL----VKGEQIL-DSTEGVIS 100
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC + +AP A +G+ + ++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132
++ V+V F A WC K + P F + ++ + VD +D+A +Y I PTL
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVDDAQDVAPKYGIRGIPTLL 78
Query: 133 LFVAG 137
LF G
Sbjct: 79 LFKNG 83
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 33.1 bits (74), Expect = 0.30, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132
N+ V++ FYA WC K +AP+ ++ + + + VD +D+A++ I PT +
Sbjct: 20 NKLVVIDFYATWCGPCKMIAPKLEELSQSMS-DVVFLKVDVDECEDIAQDNQIACMPT-F 77
Query: 133 LFV 135
LF+
Sbjct: 78 LFM 80
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 33.1 bits (74), Expect = 0.30, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
V+ F+A WC K +AP + + + +V +D ++ A +Y +++ PTL +
Sbjct: 20 VLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLK 79
Query: 136 AG 137
G
Sbjct: 80 DG 81
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL 119
+L+G+N S + + V+V F+A+WC + + P K + DLV++ +EK
Sbjct: 28 TLSGENKSLAQYRGKIVLVNFWASWCPYCRDEXPSXDRLVKSFP-KGDLVVLAVNVEKRF 86
Query: 120 AKEY 123
++Y
Sbjct: 87 PEKY 90
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
V++ F A+WC + +AP FA AK A + VD K +A+++++ A PT +LF+
Sbjct: 37 VVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDELKPIAEQFSVEAMPT-FLFM 94
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 70 MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD---LVMVDAYLEKD--LAKEYN 124
+G V F+A+WC AP + A A+ +K L +D E + + +++N
Sbjct: 27 LGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFN 86
Query: 125 ILAYPTLYLFVA 136
I +PT+ F A
Sbjct: 87 IPGFPTVRFFXA 98
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132
++ V+V F A WC +K + P F + ++ + VD +D+A E + A PT
Sbjct: 20 DKLVVVDFSATWCGPAKMIKPFFHSLSEKYSN-VIFLEVDVDDAQDVASEAEVKATPTFQ 78
Query: 133 LFVAGVRQFQFFG 145
F G + +F G
Sbjct: 79 FFKKGQKVGEFSG 91
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 32.3 bits (72), Expect = 0.53, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 67 SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL 126
S ++ V+V F+A WC SK +AP A+ +A +D D+A++ +
Sbjct: 21 SALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYS-DAAFYKLDVDEVSDVAQKAEVS 79
Query: 127 AYPTLYLFVAG 137
+ PTL + G
Sbjct: 80 SMPTLIFYKGG 90
>pdb|1J08|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|E Chain E, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|F Chain F, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|G Chain G, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|H Chain H, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
Length = 226
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 73 NRNVMVMFYAN----WCYWSKKLAPEFAAA-AKMLKGEADLVMVDAYLEKDLAKEYNILA 127
+++V ++ + +C + ++A +FA K KG+ MV+A + A +YN++A
Sbjct: 133 DKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMA 192
Query: 128 YPTLYLFVAGVRQFQFFG 145
P + + V G + QF G
Sbjct: 193 VPKIVIQVNGEDKVQFEG 210
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132
++ V+V F A WC K + P F + ++ + VD +D+A E + A PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDAQDVASEAEVKATPTFQ 78
Query: 133 LFVAGVRQFQFFG 145
F G + +F G
Sbjct: 79 FFKKGQKVGEFSG 91
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 31.2 bits (69), Expect = 0.98, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA 120
+NG N KN +++ F+A WC + E K L+ VD + LA
Sbjct: 35 INGVNM-----KNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLA 89
Query: 121 KEYNILAYPTLYLF 134
+++++ + PT+ L
Sbjct: 90 RKFSVKSLPTIILL 103
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
V+V F A+WC + +AP FA AK L + VD K +A ++ I A PT
Sbjct: 41 VVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDELKSVASDWAIQAMPTFMFLK 99
Query: 136 AG 137
G
Sbjct: 100 EG 101
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 67 SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL 126
S ++ V+V F+A WC SK +AP A+ +A +D D+A++ +
Sbjct: 13 SALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQY-SDAAFYKLDVDEVSDVAQKAEVS 71
Query: 127 AYPTLYLFVAG 137
+ PTL + G
Sbjct: 72 SMPTLIFYKGG 82
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131
+++ ++V F A WC K +AP F + G+ + VD +A+ I A PT
Sbjct: 23 EHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTF 82
Query: 132 YLFVAGVRQFQFFGERTRDVISAWV 156
+++ GV+ G ++D + A V
Sbjct: 83 HVYKDGVKADDLVGA-SQDKLKALV 106
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC K +A A +G+ + ++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
V+V F A WC SK + P F + ++ + VD +D+A E + + PT F
Sbjct: 34 VVVDFSATWCGPSKMIKPFFHSLSEKYS-NVIFLEVDVDDCQDVASECEVKSMPTFQFFK 92
Query: 136 AGVRQFQFFG 145
G + +F G
Sbjct: 93 KGQKVGEFSG 102
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWC-YWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115
++ L +F ++ + + ++V F+A WC K +AP A +G+ + ++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQ 63
Query: 116 EKDLAKEYNILAYPTLYLFVAG 137
A +Y I PTL LF G
Sbjct: 64 NPGTAPKYGIRGIPTLLLFKNG 85
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 58 VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
++ L +F ++ + + ++V F+A WC K +AP A +G+ + ++
Sbjct: 4 IIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
A +Y PTL LF G
Sbjct: 64 PGTAPKYIERGIPTLLLFKNG 84
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD 112
+MV+ + +WC K L P+FA + ++ + + VMV+
Sbjct: 49 LMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVN 85
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 67 SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL 126
S ++ V+V F+A WC K +AP A+ +A +D D+A++ +
Sbjct: 13 SALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS-DAAFYKLDVDEVSDVAQKAEVS 71
Query: 127 AYPTLYLFVAG 137
+ PTL + G
Sbjct: 72 SMPTLIFYKGG 82
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 67 SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL 126
S ++ V+V F+A WC K +AP A+ +A +D D+A++ +
Sbjct: 20 SALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS-DAAFYKLDVDEVSDVAQKAEVS 78
Query: 127 AYPTLYLFVAG 137
+ PTL + G
Sbjct: 79 SMPTLIFYKGG 89
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD 112
+MV+ + +WC K L P+FA + ++ + + VMV+
Sbjct: 42 LMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVN 78
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 27/101 (26%)
Query: 60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAA-------------AAKMLKGEA 106
++ G++ S K + ++ F+ +WC KK P+F + ++ E
Sbjct: 22 TIEGEDIS-IPNKGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQ 80
Query: 107 DLVMVDAYLEKD-------------LAKEYNILAYPTLYLF 134
+ +V+ +++ + L KEY+I+ PT +L
Sbjct: 81 NQQVVEDFIKANKLTFPIVLDSKGELXKEYHIITIPTSFLL 121
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131
+++ ++V F A WC K +AP F + G+ + VD +A+ I A PT
Sbjct: 23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTF 82
Query: 132 YLFVAGVRQFQFFGERTRDVISAWV 156
+++ GV+ G ++D + A V
Sbjct: 83 HVYKDGVKADDLVGA-SQDKLKALV 106
>pdb|1A8L|A Chain A, Protein Disulfide Oxidoreductase From Archaeon Pyrococcus
Furiosus
Length = 226
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAA-AKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF 134
V V +C + ++A +FA K KG+ MV+A + A +YN++A P + +
Sbjct: 140 VFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQ 199
Query: 135 VAGVRQFQFFG 145
V G + +F G
Sbjct: 200 VNGEDRVEFEG 210
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 29.6 bits (65), Expect = 3.3, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
V+V F A WC SK + P F + ++ + VD +D+A E + PT F
Sbjct: 23 VVVDFSATWCGPSKMIKPFFHSLSEKYS-NVIFLEVDVDDCQDVASECEVKRMPTFQFFK 81
Query: 136 AGVRQFQFFG 145
G + +F G
Sbjct: 82 KGQKVGEFSG 91
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY 123
+ SE + V+ F A WC S+++AP + ++ LV +D D + +
Sbjct: 37 QKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLV-IDVDELSDFSASW 95
Query: 124 NILAYPTLYLFVAGVRQFQFFG 145
I A PT + G + + G
Sbjct: 96 EIKATPTFFFLRDGQQVDKLVG 117
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 28.9 bits (63), Expect = 4.8, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132
++ V+V F A WC K + P F + ++ + VD +D+A E + PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVNDCQDVASECEVKCMPTFQ 78
Query: 133 LFVAGVRQFQFFG 145
F G + +F G
Sbjct: 79 FFKKGQKVGEFSG 91
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 28.9 bits (63), Expect = 5.0, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
V+V F A WC K + P F + ++ + VD +D+A E + + PT F
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVDDCQDVASESEVKSMPTFQFFK 81
Query: 136 AGVRQFQFFG 145
G + +F G
Sbjct: 82 KGQKVGEFSG 91
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 28.9 bits (63), Expect = 5.0, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
V+V F A WC K + P F + ++ + VD +D+A E + + PT F
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVDDCQDVASECEVKSMPTFQFFK 81
Query: 136 AGVRQFQFFG 145
G + +F G
Sbjct: 82 KGQKVGEFSG 91
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 28.9 bits (63), Expect = 5.6, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
V+V F A WC K + P F + ++ + VD +D+A E + PT F
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVDDCQDVASEXEVKCMPTFQFFK 81
Query: 136 AGVRQFQFFG 145
G + +F G
Sbjct: 82 KGQKVGEFSG 91
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 28.5 bits (62), Expect = 6.4, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132
++ V+V F A WC K + P F + ++ + VD +D+A E + PT
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVDDCQDVASECEVKCMPTFQ 78
Query: 133 LFVAGVRQFQFFG 145
F G + +F G
Sbjct: 79 FFKKGQKVGEFSG 91
>pdb|2WKL|A Chain A, Velaglucerase Alfa
pdb|2WKL|B Chain B, Velaglucerase Alfa
Length = 497
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 258 NFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKLLHV 317
+F+ P + T HN + + D ++ L P + KV+LT E AK + G +H
Sbjct: 258 DFIARDLGPTLANSTHHNVRLLMLDDQR---LLLPHWA--KVVLTDPEAAKYVHGIAVHW 312
Query: 318 YVE 320
Y++
Sbjct: 313 YLD 315
>pdb|3KE0|A Chain A, Crystal Structure Of N370s Glucocerebrosidase At Acidic
Ph.
pdb|3KE0|B Chain B, Crystal Structure Of N370s Glucocerebrosidase At Acidic
Ph.
pdb|3KEH|A Chain A, Crystal Structure Of N370s Glucocerebrosidase Mutant At Ph
7.4
pdb|3KEH|B Chain B, Crystal Structure Of N370s Glucocerebrosidase Mutant At Ph
7.4
Length = 497
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 258 NFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKLLHV 317
+F+ P + T HN + + D ++ L P + KV+LT E AK + G +H
Sbjct: 258 DFIARDLGPTLANSTHHNVRLLMLDDQR---LLLPHWA--KVVLTDPEAAKYVHGIAVHW 312
Query: 318 YVE 320
Y++
Sbjct: 313 YLD 315
>pdb|1OGS|A Chain A, Human Acid-Beta-Glucosidase
pdb|1OGS|B Chain B, Human Acid-Beta-Glucosidase
pdb|1Y7V|A Chain A, X-ray Structure Of Human Acid-beta-glucosidase Covalently
Bound To Conduritol B Epoxide
pdb|1Y7V|B Chain B, X-ray Structure Of Human Acid-beta-glucosidase Covalently
Bound To Conduritol B Epoxide
pdb|2F61|A Chain A, Crystal Structure Of Partially Deglycosylated Acid
Beta-Glucosidase
pdb|2F61|B Chain B, Crystal Structure Of Partially Deglycosylated Acid
Beta-Glucosidase
pdb|2J25|A Chain A, Partially Deglycosylated Glucoceramidase
pdb|2J25|B Chain B, Partially Deglycosylated Glucoceramidase
pdb|2NSX|A Chain A, Structure Of Acid-Beta-Glucosidase With Pharmacological
Chaperone Provides Insight Into Gaucher Disease
pdb|2NSX|B Chain B, Structure Of Acid-Beta-Glucosidase With Pharmacological
Chaperone Provides Insight Into Gaucher Disease
pdb|2NSX|C Chain C, Structure Of Acid-Beta-Glucosidase With Pharmacological
Chaperone Provides Insight Into Gaucher Disease
pdb|2NSX|D Chain D, Structure Of Acid-Beta-Glucosidase With Pharmacological
Chaperone Provides Insight Into Gaucher Disease
pdb|2NT0|A Chain A, Acid-Beta-Glucosidase Low Ph, Glycerol Bound
pdb|2NT0|B Chain B, Acid-Beta-Glucosidase Low Ph, Glycerol Bound
pdb|2NT0|C Chain C, Acid-Beta-Glucosidase Low Ph, Glycerol Bound
pdb|2NT0|D Chain D, Acid-Beta-Glucosidase Low Ph, Glycerol Bound
pdb|2NT1|A Chain A, Structure Of Acid-Beta-Glucosidase At Neutral Ph
pdb|2NT1|B Chain B, Structure Of Acid-Beta-Glucosidase At Neutral Ph
pdb|2NT1|C Chain C, Structure Of Acid-Beta-Glucosidase At Neutral Ph
pdb|2NT1|D Chain D, Structure Of Acid-Beta-Glucosidase At Neutral Ph
pdb|3GXD|A Chain A, Crystal Structure Of Apo Acid-Beta-Glucosidase Ph 4.5
pdb|3GXD|B Chain B, Crystal Structure Of Apo Acid-Beta-Glucosidase Ph 4.5
pdb|3GXD|C Chain C, Crystal Structure Of Apo Acid-Beta-Glucosidase Ph 4.5
pdb|3GXD|D Chain D, Crystal Structure Of Apo Acid-Beta-Glucosidase Ph 4.5
pdb|3GXF|A Chain A, Crystal Structure Of Acid-Beta-Glucosidase With
Isofagomine At Neutral Ph
pdb|3GXF|B Chain B, Crystal Structure Of Acid-Beta-Glucosidase With
Isofagomine At Neutral Ph
pdb|3GXF|C Chain C, Crystal Structure Of Acid-Beta-Glucosidase With
Isofagomine At Neutral Ph
pdb|3GXF|D Chain D, Crystal Structure Of Acid-Beta-Glucosidase With
Isofagomine At Neutral Ph
pdb|3GXI|A Chain A, Crystal Structure Of Acid-Beta-Glucosidase At Ph 5.5
pdb|3GXI|B Chain B, Crystal Structure Of Acid-Beta-Glucosidase At Ph 5.5
pdb|3GXI|C Chain C, Crystal Structure Of Acid-Beta-Glucosidase At Ph 5.5
pdb|3GXI|D Chain D, Crystal Structure Of Acid-Beta-Glucosidase At Ph 5.5
pdb|3GXM|A Chain A, Crystal Structure Of Acid-beta-glucosidase At Ph 4.5,
Phosphate Crystallization Condition
pdb|3GXM|B Chain B, Crystal Structure Of Acid-beta-glucosidase At Ph 4.5,
Phosphate Crystallization Condition
pdb|3GXM|C Chain C, Crystal Structure Of Acid-beta-glucosidase At Ph 4.5,
Phosphate Crystallization Condition
pdb|3GXM|D Chain D, Crystal Structure Of Acid-beta-glucosidase At Ph 4.5,
Phosphate Crystallization Condition
pdb|3RIK|A Chain A, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIK|B Chain B, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIK|C Chain C, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIK|D Chain D, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIL|A Chain A, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIL|B Chain B, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIL|C Chain C, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIL|D Chain D, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
Length = 497
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 258 NFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKLLHV 317
+F+ P + T HN + + D ++ L P + KV+LT E AK + G +H
Sbjct: 258 DFIARDLGPTLANSTHHNVRLLMLDDQR---LLLPHWA--KVVLTDPEAAKYVHGIAVHW 312
Query: 318 YVE 320
Y++
Sbjct: 313 YLD 315
>pdb|2V3D|A Chain A, Acid-Beta-Glucosidase With N-Butyl-Deoxynojirimycin
pdb|2V3D|B Chain B, Acid-Beta-Glucosidase With N-Butyl-Deoxynojirimycin
pdb|2V3E|A Chain A, Acid-Beta-Glucosidase With N-Nonyl-Deoxynojirimycin
pdb|2V3E|B Chain B, Acid-Beta-Glucosidase With N-Nonyl-Deoxynojirimycin
pdb|2V3F|A Chain A, Acid-Beta-Glucosidase Produced In Carrot
pdb|2V3F|B Chain B, Acid-Beta-Glucosidase Produced In Carrot
pdb|2VT0|A Chain A, X-Ray Structure Of A Conjugate With
Conduritol-Beta-Epoxide Of Acid-Beta-Glucosidase
Overexpressed In Cultured Plant Cells
pdb|2VT0|B Chain B, X-Ray Structure Of A Conjugate With
Conduritol-Beta-Epoxide Of Acid-Beta-Glucosidase
Overexpressed In Cultured Plant Cells
pdb|2WCG|A Chain A, X-Ray Structure Of Acid-Beta-Glucosidase With N-Octyl(
Cyclic Guanidine)-Nojirimycin In The Active Site
pdb|2WCG|B Chain B, X-Ray Structure Of Acid-Beta-Glucosidase With N-Octyl(
Cyclic Guanidine)-Nojirimycin In The Active Site
pdb|2XWD|A Chain A, X-Ray Structure Of Acid-Beta-Glucosidase With
5n,6o-(N'-(N- Octyl)imino)nojirimycin In The Active Site
pdb|2XWD|B Chain B, X-Ray Structure Of Acid-Beta-Glucosidase With
5n,6o-(N'-(N- Octyl)imino)nojirimycin In The Active Site
pdb|2XWE|A Chain A, X-Ray Structure Of Acid-Beta-Glucosidase With
5n,6s-(N'-(N- Octyl)imino)-6-Thionojirimycin In The
Active Site
pdb|2XWE|B Chain B, X-Ray Structure Of Acid-Beta-Glucosidase With
5n,6s-(N'-(N- Octyl)imino)-6-Thionojirimycin In The
Active Site
Length = 505
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 258 NFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKLLHV 317
+F+ P + T HN + + D ++ L P + KV+LT E AK + G +H
Sbjct: 260 DFIARDLGPTLANSTHHNVRLLMLDDQR---LLLPHWA--KVVLTDPEAAKYVHGIAVHW 314
Query: 318 YVE 320
Y++
Sbjct: 315 YLD 317
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 28.5 bits (62), Expect = 8.0, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
V+V F A WC K + P F + ++ + VD +D+A E + PT F
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVDDCQDVASECEVKCTPTFQFFK 81
Query: 136 AGVRQFQFFG 145
G + +F G
Sbjct: 82 KGQKVGEFSG 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,625,723
Number of Sequences: 62578
Number of extensions: 421930
Number of successful extensions: 1592
Number of sequences better than 100.0: 149
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1446
Number of HSP's gapped (non-prelim): 162
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)