Query 015527
Match_columns 405
No_of_seqs 291 out of 3459
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 07:08:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 7.8E-53 1.7E-57 383.0 27.9 345 54-402 23-382 (493)
2 PTZ00102 disulphide isomerase; 100.0 2.5E-44 5.5E-49 346.7 36.3 329 56-403 32-374 (477)
3 TIGR01130 ER_PDI_fam protein d 100.0 1.1E-43 2.4E-48 341.6 33.6 339 57-403 2-363 (462)
4 KOG0912 Thiol-disulfide isomer 100.0 3.4E-39 7.4E-44 268.6 22.5 308 61-377 1-323 (375)
5 PF01216 Calsequestrin: Calseq 100.0 8.3E-34 1.8E-38 241.8 30.2 320 52-377 30-372 (383)
6 KOG4277 Uncharacterized conser 100.0 8.8E-33 1.9E-37 230.1 18.9 290 72-375 42-353 (468)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.9 6.2E-24 1.3E-28 160.0 12.2 102 55-156 8-113 (113)
8 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 3.7E-23 8.1E-28 155.1 11.8 99 57-155 2-100 (101)
9 PF13848 Thioredoxin_6: Thiore 99.9 2.7E-22 5.8E-27 168.4 16.7 177 188-371 1-184 (184)
10 KOG0910 Thioredoxin-like prote 99.9 7.9E-23 1.7E-27 155.9 11.3 106 56-161 43-149 (150)
11 PRK10996 thioredoxin 2; Provis 99.9 8.7E-22 1.9E-26 155.6 16.0 135 26-160 5-139 (139)
12 PF00085 Thioredoxin: Thioredo 99.9 1.2E-21 2.6E-26 147.9 14.5 102 58-159 1-103 (103)
13 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 4.7E-22 1E-26 150.1 11.9 100 57-156 2-104 (104)
14 cd03065 PDI_b_Calsequestrin_N 99.9 9.5E-22 2.1E-26 148.9 12.6 107 53-160 6-119 (120)
15 cd02996 PDI_a_ERp44 PDIa famil 99.9 6.4E-22 1.4E-26 150.2 11.7 100 57-156 2-108 (108)
16 KOG0191 Thioredoxin/protein di 99.9 1.1E-20 2.4E-25 175.8 20.3 277 65-349 39-353 (383)
17 cd02994 PDI_a_TMX PDIa family, 99.9 4.3E-21 9.2E-26 144.0 12.7 99 57-158 2-101 (101)
18 COG3118 Thioredoxin domain-con 99.9 3.9E-21 8.5E-26 162.7 12.8 108 55-162 22-132 (304)
19 PTZ00443 Thioredoxin domain-co 99.9 2.1E-20 4.6E-25 157.5 16.4 106 56-161 30-140 (224)
20 cd03005 PDI_a_ERp46 PDIa famil 99.9 8.6E-21 1.9E-25 142.8 11.7 98 58-156 2-102 (102)
21 PHA02278 thioredoxin-like prot 99.9 1.5E-20 3.3E-25 139.1 12.6 93 63-155 4-100 (103)
22 cd02963 TRX_DnaJ TRX domain, D 99.8 1.7E-20 3.7E-25 142.5 12.2 99 60-158 8-110 (111)
23 cd02954 DIM1 Dim1 family; Dim1 99.8 9.5E-21 2.1E-25 140.8 10.4 90 63-152 2-93 (114)
24 PRK09381 trxA thioredoxin; Pro 99.8 4.3E-20 9.4E-25 140.5 14.0 105 56-160 3-108 (109)
25 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.7E-20 3.6E-25 143.1 11.6 100 58-157 2-109 (109)
26 TIGR02187 GlrX_arch Glutaredox 99.8 3.5E-19 7.5E-24 152.1 20.3 182 73-262 19-214 (215)
27 cd02956 ybbN ybbN protein fami 99.8 5.1E-20 1.1E-24 136.8 12.0 93 65-157 2-96 (96)
28 cd02999 PDI_a_ERp44_like PDIa 99.8 3.6E-20 7.9E-25 137.6 10.8 84 71-156 16-100 (100)
29 cd02997 PDI_a_PDIR PDIa family 99.8 6E-20 1.3E-24 138.8 11.9 99 58-156 2-104 (104)
30 cd02962 TMX2 TMX2 family; comp 99.8 2.5E-19 5.5E-24 141.8 15.6 90 56-145 28-126 (152)
31 cd03007 PDI_a_ERp29_N PDIa fam 99.8 4.4E-20 9.4E-25 137.7 10.1 99 57-159 2-115 (116)
32 cd02985 TRX_CDSP32 TRX family, 99.8 1.3E-19 2.8E-24 135.8 12.7 95 62-158 2-101 (103)
33 cd03001 PDI_a_P5 PDIa family, 99.8 1.2E-19 2.6E-24 136.9 12.5 99 58-156 2-102 (103)
34 cd02948 TRX_NDPK TRX domain, T 99.8 1.8E-19 3.9E-24 134.8 12.7 96 61-158 5-101 (102)
35 TIGR01126 pdi_dom protein disu 99.8 1E-19 2.2E-24 137.0 11.4 99 61-159 1-101 (102)
36 cd02965 HyaE HyaE family; HyaE 99.8 2.1E-19 4.6E-24 132.5 11.6 99 56-154 10-110 (111)
37 cd02993 PDI_a_APS_reductase PD 99.8 2E-19 4.3E-24 136.5 11.5 100 57-156 2-109 (109)
38 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 5.5E-19 1.2E-23 133.5 10.8 98 58-156 2-104 (104)
39 cd02998 PDI_a_ERp38 PDIa famil 99.8 1.2E-18 2.7E-23 131.8 10.7 99 58-156 2-105 (105)
40 cd03000 PDI_a_TMX3 PDIa family 99.8 1.9E-18 4.1E-23 130.1 11.2 94 64-159 7-103 (104)
41 TIGR01068 thioredoxin thioredo 99.8 3.4E-18 7.3E-23 128.4 12.5 100 61-160 1-101 (101)
42 cd02961 PDI_a_family Protein D 99.8 2E-18 4.3E-23 129.6 10.3 97 60-156 2-101 (101)
43 PLN00410 U5 snRNP protein, DIM 99.8 8.2E-18 1.8E-22 130.2 13.0 99 62-160 10-120 (142)
44 cd02989 Phd_like_TxnDC9 Phosdu 99.8 1.1E-17 2.3E-22 127.1 13.3 90 56-146 4-94 (113)
45 cd02950 TxlA TRX-like protein 99.8 6.1E-18 1.3E-22 133.9 12.3 99 63-161 10-111 (142)
46 cd02957 Phd_like Phosducin (Ph 99.8 7.7E-18 1.7E-22 128.6 12.2 89 56-146 4-95 (113)
47 cd02953 DsbDgamma DsbD gamma f 99.8 3E-18 6.4E-23 129.1 9.7 94 64-157 2-104 (104)
48 KOG0907 Thioredoxin [Posttrans 99.8 8.3E-18 1.8E-22 124.4 11.1 86 71-158 19-104 (106)
49 cd02984 TRX_PICOT TRX domain, 99.7 2.5E-17 5.3E-22 122.6 11.9 93 63-156 2-96 (97)
50 cd02949 TRX_NTR TRX domain, no 99.7 3.1E-17 6.7E-22 121.7 12.0 87 71-157 11-97 (97)
51 PTZ00051 thioredoxin; Provisio 99.7 6.1E-17 1.3E-21 120.7 11.7 90 62-153 7-96 (98)
52 TIGR00424 APS_reduc 5'-adenyly 99.7 8E-17 1.7E-21 149.3 13.4 109 50-158 345-461 (463)
53 cd02992 PDI_a_QSOX PDIa family 99.7 1.2E-16 2.5E-21 121.8 11.6 96 57-152 2-108 (114)
54 PLN02309 5'-adenylylsulfate re 99.7 1.3E-16 2.7E-21 148.0 13.3 108 52-159 341-456 (457)
55 cd02986 DLP Dim1 family, Dim1- 99.7 2.1E-16 4.6E-21 116.3 11.1 77 64-140 3-81 (114)
56 KOG1731 FAD-dependent sulfhydr 99.7 4.7E-16 1E-20 142.4 15.3 226 53-282 36-294 (606)
57 TIGR01295 PedC_BrcD bacterioci 99.7 4.3E-16 9.2E-21 119.6 12.7 100 56-157 6-121 (122)
58 cd02951 SoxW SoxW family; SoxW 99.7 4.2E-16 9.2E-21 121.6 11.7 98 64-161 4-120 (125)
59 PRK15412 thiol:disulfide inter 99.7 1.2E-15 2.7E-20 127.0 15.0 88 71-161 66-177 (185)
60 cd02987 Phd_like_Phd Phosducin 99.7 6.5E-16 1.4E-20 126.3 12.7 89 55-145 61-153 (175)
61 cd02975 PfPDO_like_N Pyrococcu 99.7 5E-16 1.1E-20 118.0 11.2 94 66-160 15-110 (113)
62 cd02947 TRX_family TRX family; 99.7 7.9E-16 1.7E-20 113.4 11.9 91 65-156 2-92 (93)
63 PTZ00102 disulphide isomerase; 99.7 4.9E-16 1.1E-20 150.2 13.5 113 52-164 353-469 (477)
64 PTZ00062 glutaredoxin; Provisi 99.7 5.5E-15 1.2E-19 122.6 17.4 161 62-235 5-173 (204)
65 KOG0908 Thioredoxin-like prote 99.7 3.6E-16 7.8E-21 128.0 10.0 98 62-161 8-107 (288)
66 KOG0190 Protein disulfide isom 99.6 5.9E-16 1.3E-20 142.4 8.9 110 50-161 359-474 (493)
67 PRK03147 thiol-disulfide oxido 99.6 5.1E-15 1.1E-19 122.7 13.2 105 55-159 43-171 (173)
68 PRK14018 trifunctional thiored 99.6 8.9E-15 1.9E-19 137.5 13.7 102 56-159 41-172 (521)
69 TIGR02738 TrbB type-F conjugat 99.6 3.8E-14 8.1E-19 112.8 13.0 88 71-160 48-153 (153)
70 cd02988 Phd_like_VIAF Phosduci 99.6 2.4E-14 5.3E-19 118.6 12.3 89 54-146 80-171 (192)
71 cd02982 PDI_b'_family Protein 99.6 1.6E-14 3.4E-19 108.7 10.3 94 66-159 5-102 (103)
72 TIGR00411 redox_disulf_1 small 99.6 2.8E-14 6E-19 102.5 10.6 80 76-159 2-81 (82)
73 cd03072 PDI_b'_ERp44 PDIb' fam 99.6 1.5E-14 3.3E-19 108.9 9.1 106 268-376 1-111 (111)
74 TIGR01130 ER_PDI_fam protein d 99.6 5.7E-12 1.2E-16 121.5 28.0 306 56-377 111-458 (462)
75 TIGR00385 dsbE periplasmic pro 99.5 6.7E-14 1.5E-18 115.4 10.9 89 70-161 60-172 (173)
76 cd02952 TRP14_like Human TRX-r 99.5 4.6E-14 9.9E-19 106.6 8.9 77 62-138 8-101 (119)
77 cd03010 TlpA_like_DsbE TlpA-li 99.5 2.2E-13 4.8E-18 106.6 10.4 87 64-152 16-126 (127)
78 cd02959 ERp19 Endoplasmic reti 99.5 5.7E-14 1.2E-18 107.2 6.8 96 64-159 10-112 (117)
79 PRK13728 conjugal transfer pro 99.5 3.8E-13 8.2E-18 108.7 11.1 84 77-162 73-173 (181)
80 PF13098 Thioredoxin_2: Thiore 99.4 3.6E-13 7.9E-18 102.9 8.4 85 72-156 4-112 (112)
81 cd03008 TryX_like_RdCVF Trypar 99.4 8.5E-13 1.9E-17 103.7 9.1 70 72-141 24-127 (146)
82 cd02955 SSP411 TRX domain, SSP 99.4 1.5E-12 3.3E-17 99.5 9.9 97 62-158 4-117 (124)
83 KOG0191 Thioredoxin/protein di 99.4 1.6E-12 3.4E-17 121.3 11.5 181 57-240 145-354 (383)
84 cd02983 P5_C P5 family, C-term 99.4 3.5E-12 7.5E-17 98.9 11.1 109 266-377 2-119 (130)
85 TIGR00412 redox_disulf_2 small 99.4 2.3E-12 5E-17 90.2 9.0 73 77-156 2-75 (76)
86 PHA02125 thioredoxin-like prot 99.4 3.3E-12 7.2E-17 89.3 9.7 70 77-155 2-72 (75)
87 cd03009 TryX_like_TryX_NRX Try 99.4 1.9E-12 4E-17 101.9 8.8 72 71-142 16-115 (131)
88 TIGR02187 GlrX_arch Glutaredox 99.4 3.9E-12 8.4E-17 108.7 11.4 95 60-158 119-214 (215)
89 PRK00293 dipZ thiol:disulfide 99.4 3.5E-12 7.6E-17 123.9 11.6 97 62-159 459-569 (571)
90 TIGR01626 ytfJ_HI0045 conserve 99.4 7.3E-12 1.6E-16 102.0 11.3 88 66-156 52-176 (184)
91 TIGR02740 TraF-like TraF-like 99.4 7.6E-12 1.6E-16 109.8 11.8 88 72-161 165-265 (271)
92 cd02964 TryX_like_family Trypa 99.4 3.3E-12 7.2E-17 100.5 8.6 70 72-141 16-114 (132)
93 PF13905 Thioredoxin_8: Thiore 99.3 6.4E-12 1.4E-16 92.8 9.2 66 73-138 1-94 (95)
94 cd03011 TlpA_like_ScsD_MtbDsbE 99.3 6.6E-12 1.4E-16 97.7 9.7 96 58-155 5-121 (123)
95 PRK11509 hydrogenase-1 operon 99.3 2.2E-11 4.8E-16 92.8 12.2 107 58-164 19-128 (132)
96 PTZ00056 glutathione peroxidas 99.3 6.8E-12 1.5E-16 105.3 9.9 105 57-161 23-179 (199)
97 PLN02399 phospholipid hydroper 99.3 1.2E-11 2.7E-16 105.3 10.9 106 55-160 81-234 (236)
98 cd03073 PDI_b'_ERp72_ERp57 PDI 99.3 9.9E-12 2.1E-16 93.4 8.8 101 268-373 1-111 (111)
99 cd02966 TlpA_like_family TlpA- 99.3 9E-12 2E-16 95.6 8.8 85 61-145 7-116 (116)
100 PLN02919 haloacid dehalogenase 99.3 1.8E-11 4E-16 126.9 11.4 89 72-160 419-536 (1057)
101 TIGR02661 MauD methylamine deh 99.3 2.8E-11 6E-16 101.1 10.4 102 56-159 55-178 (189)
102 PLN02412 probable glutathione 99.3 3.7E-11 8.1E-16 98.2 10.7 104 58-161 14-165 (167)
103 cd03012 TlpA_like_DipZ_like Tl 99.3 2.5E-11 5.5E-16 94.6 9.2 75 72-146 22-125 (126)
104 PF13848 Thioredoxin_6: Thiore 99.3 6.4E-10 1.4E-14 93.1 18.3 167 90-262 7-184 (184)
105 PF08534 Redoxin: Redoxin; In 99.2 3.8E-11 8.3E-16 96.4 9.5 88 61-148 16-136 (146)
106 cd02967 mauD Methylamine utili 99.2 2.4E-11 5.1E-16 93.2 7.8 69 72-140 20-109 (114)
107 cd02982 PDI_b'_family Protein 99.2 9E-11 1.9E-15 88.1 9.2 96 275-373 4-103 (103)
108 TIGR02540 gpx7 putative glutat 99.2 1.1E-10 2.3E-15 94.4 10.0 100 60-159 9-152 (153)
109 cd00340 GSH_Peroxidase Glutath 99.2 5.5E-11 1.2E-15 95.9 7.9 83 72-155 21-151 (152)
110 cd02973 TRX_GRX_like Thioredox 99.2 1E-10 2.2E-15 80.1 7.1 57 76-133 2-58 (67)
111 cd03026 AhpF_NTD_C TRX-GRX-lik 99.2 2.9E-10 6.3E-15 81.9 9.5 76 72-152 11-86 (89)
112 cd02958 UAS UAS family; UAS is 99.2 5.8E-10 1.3E-14 85.2 11.4 94 67-160 11-111 (114)
113 cd02981 PDI_b_family Protein D 99.1 6.3E-10 1.4E-14 82.4 10.5 95 165-263 2-97 (97)
114 KOG0914 Thioredoxin-like prote 99.1 3.9E-10 8.5E-15 90.8 8.6 90 56-145 124-223 (265)
115 cd02960 AGR Anterior Gradient 99.1 3.9E-10 8.5E-15 86.1 7.5 81 66-147 16-100 (130)
116 cd03066 PDI_b_Calsequestrin_mi 99.1 1.6E-09 3.4E-14 80.7 10.7 97 164-264 2-101 (102)
117 COG4232 Thiol:disulfide interc 99.1 7.7E-10 1.7E-14 103.4 10.8 101 59-160 457-568 (569)
118 cd03069 PDI_b_ERp57 PDIb famil 99.1 1.7E-09 3.7E-14 80.8 10.2 95 164-263 2-103 (104)
119 cd02969 PRX_like1 Peroxiredoxi 99.1 1.9E-09 4.2E-14 88.9 11.5 92 72-163 24-155 (171)
120 PTZ00256 glutathione peroxidas 99.0 1.1E-09 2.4E-14 91.1 9.3 103 58-160 25-181 (183)
121 COG2143 Thioredoxin-related pr 99.0 2E-08 4.2E-13 76.8 13.7 110 68-177 37-166 (182)
122 KOG0913 Thiol-disulfide isomer 99.0 1.6E-10 3.4E-15 94.6 2.4 101 57-160 25-126 (248)
123 cd03017 PRX_BCP Peroxiredoxin 99.0 2.7E-09 5.9E-14 84.9 9.5 85 72-156 22-139 (140)
124 smart00594 UAS UAS domain. 99.0 8.4E-09 1.8E-13 79.6 11.2 89 68-156 22-121 (122)
125 PF13899 Thioredoxin_7: Thiore 98.9 3E-09 6.6E-14 75.8 6.8 69 66-135 10-81 (82)
126 cd03068 PDI_b_ERp72 PDIb famil 98.9 2E-08 4.3E-13 75.2 10.1 97 163-263 1-107 (107)
127 PRK00522 tpx lipid hydroperoxi 98.9 2.2E-08 4.7E-13 82.0 10.5 84 72-156 43-165 (167)
128 PF00578 AhpC-TSA: AhpC/TSA fa 98.9 7.9E-09 1.7E-13 80.4 7.1 70 72-141 24-123 (124)
129 cd03003 PDI_a_ERdj5_N PDIa fam 98.8 3E-08 6.6E-13 73.9 9.7 98 266-368 1-100 (101)
130 cd03015 PRX_Typ2cys Peroxiredo 98.8 3.2E-08 6.9E-13 81.7 10.5 88 72-159 28-156 (173)
131 PF00085 Thioredoxin: Thioredo 98.8 3.5E-08 7.6E-13 73.9 9.0 99 268-371 1-102 (103)
132 cd03004 PDI_a_ERdj5_C PDIa fam 98.8 2.8E-08 6.1E-13 74.6 8.3 99 266-369 1-104 (104)
133 TIGR03137 AhpC peroxiredoxin. 98.8 6.6E-08 1.4E-12 80.7 11.0 86 72-157 30-153 (187)
134 cd03074 PDI_b'_Calsequestrin_C 98.8 6.6E-08 1.4E-12 68.7 9.1 107 266-373 1-120 (120)
135 PRK09437 bcp thioredoxin-depen 98.8 5.9E-08 1.3E-12 78.5 10.3 94 58-151 15-144 (154)
136 cd03065 PDI_b_Calsequestrin_N 98.8 5E-08 1.1E-12 74.1 8.7 100 268-373 11-119 (120)
137 cd03014 PRX_Atyp2cys Peroxired 98.8 4.8E-08 1E-12 78.0 9.2 74 72-146 25-129 (143)
138 KOG0912 Thiol-disulfide isomer 98.8 3.4E-07 7.3E-12 78.1 14.3 194 170-377 3-212 (375)
139 cd02970 PRX_like2 Peroxiredoxi 98.8 5.8E-08 1.3E-12 78.1 9.6 43 73-115 24-67 (149)
140 COG0526 TrxA Thiol-disulfide i 98.8 4.1E-08 8.9E-13 75.5 8.4 82 73-154 32-118 (127)
141 TIGR02196 GlrX_YruB Glutaredox 98.7 9.5E-08 2.1E-12 66.6 8.3 69 77-157 2-74 (74)
142 cd03007 PDI_a_ERp29_N PDIa fam 98.7 2.1E-07 4.6E-12 69.8 10.2 95 166-263 5-115 (116)
143 KOG2501 Thioredoxin, nucleored 98.7 4E-08 8.7E-13 76.5 6.3 69 72-140 32-129 (157)
144 cd03006 PDI_a_EFP1_N PDIa fami 98.7 1.3E-07 2.8E-12 71.4 8.9 99 266-369 9-113 (113)
145 cd03018 PRX_AhpE_like Peroxire 98.7 1.5E-07 3.2E-12 75.8 9.8 74 74-147 29-134 (149)
146 PF01216 Calsequestrin: Calseq 98.7 1.5E-06 3.3E-11 75.8 16.0 210 164-389 36-264 (383)
147 cd03001 PDI_a_P5 PDIa family, 98.7 1.5E-07 3.3E-12 70.4 8.6 97 268-369 2-102 (103)
148 cd03002 PDI_a_MPD1_like PDI fa 98.7 1.5E-07 3.2E-12 71.3 8.6 100 268-370 2-109 (109)
149 PRK10382 alkyl hydroperoxide r 98.6 3E-07 6.4E-12 76.2 10.7 88 72-159 30-155 (187)
150 PRK13190 putative peroxiredoxi 98.6 2.9E-07 6.2E-12 77.7 10.8 89 72-160 26-154 (202)
151 KOG4277 Uncharacterized conser 98.6 1E-06 2.2E-11 75.0 13.8 176 179-371 42-229 (468)
152 cd02971 PRX_family Peroxiredox 98.6 1.5E-07 3.3E-12 74.8 8.5 77 72-148 21-131 (140)
153 PRK10606 btuE putative glutath 98.6 2.3E-07 5E-12 76.3 9.6 93 58-161 10-116 (183)
154 cd02968 SCO SCO (an acronym fo 98.6 1.1E-07 2.3E-12 75.9 7.5 43 72-114 21-68 (142)
155 KOG0910 Thioredoxin-like prote 98.6 2.2E-07 4.8E-12 71.7 8.3 104 266-374 43-149 (150)
156 TIGR01126 pdi_dom protein disu 98.6 3.1E-07 6.8E-12 68.5 8.6 97 271-372 1-101 (102)
157 PF13728 TraF: F plasmid trans 98.6 4.6E-07 9.9E-12 76.8 10.5 83 72-156 119-214 (215)
158 cd03005 PDI_a_ERp46 PDIa famil 98.6 2.2E-07 4.8E-12 69.4 7.6 97 268-369 2-102 (102)
159 cd01659 TRX_superfamily Thiore 98.6 2.7E-07 5.9E-12 62.3 7.2 60 77-137 1-63 (69)
160 cd02996 PDI_a_ERp44 PDIa famil 98.6 4.2E-07 9.1E-12 68.6 8.6 97 268-369 3-108 (108)
161 PRK15000 peroxidase; Provision 98.6 6.4E-07 1.4E-11 75.3 10.5 87 72-158 33-160 (200)
162 cd02994 PDI_a_TMX PDIa family, 98.5 8E-07 1.7E-11 66.2 9.0 97 268-371 3-101 (101)
163 TIGR02200 GlrX_actino Glutared 98.5 8E-07 1.7E-11 62.5 8.3 69 77-156 2-75 (77)
164 PRK09381 trxA thioredoxin; Pro 98.5 1.4E-06 3.1E-11 65.9 9.7 101 268-373 5-108 (109)
165 PF02114 Phosducin: Phosducin; 98.5 1.4E-06 3.1E-11 75.8 10.5 103 55-159 124-237 (265)
166 cd03016 PRX_1cys Peroxiredoxin 98.5 1.5E-06 3.3E-11 73.4 10.5 85 75-159 28-153 (203)
167 PRK13599 putative peroxiredoxi 98.5 1.8E-06 3.8E-11 73.4 10.6 88 72-159 27-155 (215)
168 KOG0911 Glutaredoxin-related p 98.5 1.7E-06 3.7E-11 71.0 10.0 154 70-224 14-187 (227)
169 PF13192 Thioredoxin_3: Thiore 98.4 2.2E-06 4.8E-11 59.9 9.1 72 79-157 4-76 (76)
170 PTZ00443 Thioredoxin domain-co 98.4 1.4E-06 3.1E-11 73.9 9.3 110 267-385 31-148 (224)
171 PRK10996 thioredoxin 2; Provis 98.4 1.7E-06 3.7E-11 68.3 9.1 100 269-373 38-139 (139)
172 PF07912 ERp29_N: ERp29, N-ter 98.4 7E-06 1.5E-10 60.8 11.4 104 56-161 4-120 (126)
173 TIGR02739 TraF type-F conjugat 98.4 2.5E-06 5.4E-11 73.5 10.5 86 73-160 150-248 (256)
174 PTZ00137 2-Cys peroxiredoxin; 98.4 3.2E-06 7E-11 73.3 11.0 88 72-159 97-224 (261)
175 PF03190 Thioredox_DsbH: Prote 98.4 2.6E-06 5.7E-11 67.6 9.5 80 61-140 25-116 (163)
176 TIGR03143 AhpF_homolog putativ 98.4 3.5E-05 7.6E-10 75.8 19.4 179 72-260 365-554 (555)
177 cd02995 PDI_a_PDI_a'_C PDIa fa 98.4 2.3E-06 5E-11 64.0 8.7 96 268-369 2-104 (104)
178 cd02998 PDI_a_ERp38 PDIa famil 98.4 2.7E-06 5.8E-11 63.8 8.9 97 268-369 2-105 (105)
179 KOG2603 Oligosaccharyltransfer 98.4 3.7E-06 8E-11 72.4 10.3 109 54-162 38-168 (331)
180 PRK13189 peroxiredoxin; Provis 98.4 3.8E-06 8.1E-11 71.9 10.3 88 72-159 34-162 (222)
181 PRK13191 putative peroxiredoxi 98.3 5.5E-06 1.2E-10 70.4 10.9 88 72-159 32-160 (215)
182 cd02965 HyaE HyaE family; HyaE 98.3 4.5E-06 9.8E-11 62.0 9.0 94 268-366 12-109 (111)
183 cd02991 UAS_ETEA UAS family, E 98.3 7.8E-06 1.7E-10 62.0 10.2 91 69-160 13-113 (116)
184 TIGR01068 thioredoxin thioredo 98.3 4.4E-06 9.5E-11 62.1 8.7 83 285-372 16-100 (101)
185 cd02956 ybbN ybbN protein fami 98.3 5.7E-06 1.2E-10 60.9 8.9 82 284-370 13-96 (96)
186 KOG1672 ATP binding protein [P 98.3 2.7E-06 5.8E-11 68.0 7.2 89 56-145 66-155 (211)
187 cd02997 PDI_a_PDIR PDIa family 98.3 3.8E-06 8.1E-11 62.9 7.9 99 268-369 2-104 (104)
188 TIGR02180 GRX_euk Glutaredoxin 98.3 2.3E-06 4.9E-11 61.3 5.8 58 77-138 1-63 (84)
189 cd02993 PDI_a_APS_reductase PD 98.2 6.4E-06 1.4E-10 62.2 8.3 98 268-369 3-109 (109)
190 COG3118 Thioredoxin domain-con 98.2 6.1E-06 1.3E-10 71.1 8.6 104 266-375 23-132 (304)
191 cd02950 TxlA TRX-like protein 98.2 1.4E-05 3E-10 63.4 9.9 98 276-376 13-113 (142)
192 cd03000 PDI_a_TMX3 PDIa family 98.2 1.3E-05 2.8E-10 60.0 9.3 93 274-372 7-103 (104)
193 PRK13703 conjugal pilus assemb 98.2 1.2E-05 2.5E-10 69.0 9.9 86 73-160 143-241 (248)
194 cd02961 PDI_a_family Protein D 98.2 9.7E-06 2.1E-10 60.0 8.5 95 270-369 2-101 (101)
195 PTZ00253 tryparedoxin peroxida 98.2 1.6E-05 3.4E-10 67.1 10.5 87 72-158 35-162 (199)
196 PF14595 Thioredoxin_9: Thiore 98.2 8.3E-06 1.8E-10 63.1 7.7 71 73-144 41-115 (129)
197 PHA02278 thioredoxin-like prot 98.2 1.8E-05 3.9E-10 58.7 9.0 89 168-260 2-101 (103)
198 PRK11200 grxA glutaredoxin 1; 98.2 1.6E-05 3.4E-10 57.0 8.5 76 76-160 2-83 (85)
199 cd03072 PDI_b'_ERp44 PDIb' fam 98.2 2.7E-05 5.8E-10 58.7 10.0 101 59-161 2-109 (111)
200 cd02981 PDI_b_family Protein D 98.1 2.8E-05 6.1E-10 57.3 9.8 89 63-158 7-96 (97)
201 KOG3425 Uncharacterized conser 98.1 1.2E-05 2.5E-10 59.0 7.2 73 64-136 13-104 (128)
202 cd02963 TRX_DnaJ TRX domain, D 98.1 1.2E-05 2.5E-10 60.9 7.6 84 283-371 24-110 (111)
203 cd02989 Phd_like_TxnDC9 Phosdu 98.1 4.3E-05 9.3E-10 57.9 10.4 95 163-260 5-112 (113)
204 PF06110 DUF953: Eukaryotic pr 98.1 2.4E-05 5.2E-10 59.0 8.6 74 64-137 6-99 (119)
205 PF07449 HyaE: Hydrogenase-1 e 98.1 4E-05 8.7E-10 56.3 8.8 95 56-151 9-106 (107)
206 cd02999 PDI_a_ERp44_like PDIa 98.0 2.2E-05 4.8E-10 58.1 7.4 78 285-369 21-100 (100)
207 cd03071 PDI_b'_NRX PDIb' famil 98.0 6.1E-05 1.3E-09 53.9 8.7 88 285-374 16-116 (116)
208 PRK10877 protein disulfide iso 98.0 4.3E-05 9.3E-10 65.8 9.5 80 73-159 107-230 (232)
209 cd02953 DsbDgamma DsbD gamma f 98.0 5.1E-05 1.1E-09 56.7 8.6 88 171-261 2-104 (104)
210 cd02976 NrdH NrdH-redoxin (Nrd 98.0 4.8E-05 1E-09 52.5 7.9 67 77-155 2-72 (73)
211 TIGR00424 APS_reduc 5'-adenyly 98.0 5.6E-05 1.2E-09 71.1 10.1 104 266-372 351-462 (463)
212 cd02983 P5_C P5 family, C-term 98.0 0.0003 6.5E-09 54.6 12.6 108 57-164 3-119 (130)
213 PRK11509 hydrogenase-1 operon 97.9 0.00012 2.5E-09 56.3 9.8 105 263-375 17-126 (132)
214 cd03073 PDI_b'_ERp72_ERp57 PDI 97.9 9.9E-05 2.1E-09 55.5 9.3 98 60-159 3-110 (111)
215 cd02949 TRX_NTR TRX domain, no 97.9 8.2E-05 1.8E-09 54.8 8.4 85 281-370 11-97 (97)
216 PF11009 DUF2847: Protein of u 97.9 0.00021 4.6E-09 52.2 9.9 91 62-152 6-104 (105)
217 cd02948 TRX_NDPK TRX domain, T 97.9 8.1E-05 1.8E-09 55.4 8.0 93 272-371 6-101 (102)
218 cd02975 PfPDO_like_N Pyrococcu 97.9 0.00012 2.7E-09 55.4 9.0 87 282-374 21-111 (113)
219 PTZ00062 glutaredoxin; Provisi 97.9 0.00059 1.3E-08 57.1 13.6 162 167-348 3-176 (204)
220 cd02954 DIM1 Dim1 family; Dim1 97.9 2.8E-05 6.1E-10 58.2 5.0 67 285-356 16-84 (114)
221 cd03020 DsbA_DsbC_DsbG DsbA fa 97.8 7.8E-05 1.7E-09 62.9 8.2 76 73-156 77-197 (197)
222 cd02985 TRX_CDSP32 TRX family, 97.8 0.00019 4.2E-09 53.4 9.4 88 169-261 2-100 (103)
223 TIGR03143 AhpF_homolog putativ 97.8 0.00019 4.2E-09 70.6 11.3 91 61-156 463-554 (555)
224 PF00462 Glutaredoxin: Glutare 97.8 0.00016 3.4E-09 47.9 7.4 54 77-138 1-58 (60)
225 PLN02309 5'-adenylylsulfate re 97.8 0.00016 3.6E-09 68.0 9.8 102 266-372 345-456 (457)
226 KOG3414 Component of the U4/U6 97.8 0.00038 8.3E-09 51.5 9.5 77 62-138 10-88 (142)
227 PTZ00051 thioredoxin; Provisio 97.7 0.00022 4.8E-09 52.6 8.4 89 164-257 2-96 (98)
228 PLN00410 U5 snRNP protein, DIM 97.7 0.00036 7.7E-09 54.5 9.6 87 285-375 25-122 (142)
229 cd03070 PDI_b_ERp44 PDIb famil 97.7 0.00018 3.9E-09 51.2 7.2 83 165-253 2-86 (91)
230 cd02947 TRX_family TRX family; 97.7 0.00031 6.7E-09 50.7 8.7 85 280-370 7-93 (93)
231 PRK11657 dsbG disulfide isomer 97.7 0.0003 6.6E-09 61.4 9.9 82 73-157 117-249 (251)
232 cd02984 TRX_PICOT TRX domain, 97.7 0.00019 4.2E-09 52.7 7.5 79 284-369 15-96 (97)
233 cd02957 Phd_like Phosducin (Ph 97.7 0.00024 5.1E-09 54.0 8.0 95 268-369 6-112 (113)
234 PRK15317 alkyl hydroperoxide r 97.7 0.00038 8.3E-09 68.0 11.1 97 60-161 102-199 (517)
235 cd02987 Phd_like_Phd Phosducin 97.6 0.00047 1E-08 56.6 9.5 99 162-263 62-174 (175)
236 cd03067 PDI_b_PDIR_N PDIb fami 97.6 0.0003 6.4E-09 50.0 6.9 97 274-371 10-110 (112)
237 TIGR02190 GlrX-dom Glutaredoxi 97.6 0.00044 9.6E-09 48.6 8.0 58 73-138 6-66 (79)
238 TIGR00411 redox_disulf_1 small 97.6 0.00081 1.7E-08 47.6 9.3 77 287-372 4-81 (82)
239 cd03067 PDI_b_PDIR_N PDIb fami 97.6 0.00079 1.7E-08 47.9 8.5 96 62-158 8-110 (112)
240 cd03023 DsbA_Com1_like DsbA fa 97.6 0.00052 1.1E-08 55.2 8.8 33 72-104 4-36 (154)
241 cd02962 TMX2 TMX2 family; comp 97.5 0.00037 8E-09 55.5 7.3 80 267-349 29-117 (152)
242 cd03419 GRX_GRXh_1_2_like Glut 97.5 0.00027 5.9E-09 50.1 6.0 56 77-138 2-62 (82)
243 cd02988 Phd_like_VIAF Phosduci 97.5 0.0011 2.4E-08 55.2 10.2 97 162-262 82-190 (192)
244 PF13462 Thioredoxin_4: Thiore 97.5 0.00099 2.1E-08 54.2 9.9 82 72-158 11-162 (162)
245 PF05768 DUF836: Glutaredoxin- 97.5 0.00044 9.6E-09 48.8 6.6 79 76-157 1-81 (81)
246 COG1225 Bcp Peroxiredoxin [Pos 97.5 0.0017 3.7E-08 51.4 10.2 100 60-159 17-155 (157)
247 TIGR02183 GRXA Glutaredoxin, G 97.5 0.00033 7.2E-09 50.1 5.8 75 77-160 2-82 (86)
248 PF02966 DIM1: Mitosis protein 97.4 0.0052 1.1E-07 46.5 11.2 76 62-138 7-85 (133)
249 cd02992 PDI_a_QSOX PDIa family 97.4 0.00072 1.6E-08 51.3 6.8 80 268-350 3-88 (114)
250 TIGR03140 AhpF alkyl hydropero 97.3 0.0022 4.9E-08 62.6 11.1 95 60-159 103-198 (515)
251 PRK10329 glutaredoxin-like pro 97.3 0.0039 8.4E-08 43.9 9.3 71 77-159 3-76 (81)
252 TIGR02194 GlrX_NrdH Glutaredox 97.3 0.00089 1.9E-08 46.1 6.0 66 78-154 2-70 (72)
253 cd02066 GRX_family Glutaredoxi 97.2 0.00092 2E-08 45.7 5.8 56 77-140 2-61 (72)
254 cd03066 PDI_b_Calsequestrin_mi 97.2 0.0082 1.8E-07 44.5 10.9 94 59-159 3-100 (102)
255 PF07912 ERp29_N: ERp29, N-ter 97.2 0.0064 1.4E-07 45.4 9.9 104 269-372 7-118 (126)
256 cd03029 GRX_hybridPRX5 Glutare 97.2 0.0041 8.8E-08 42.8 8.5 66 77-156 3-71 (72)
257 cd03019 DsbA_DsbA DsbA family, 97.2 0.0027 5.9E-08 52.5 9.1 38 72-109 14-51 (178)
258 cd03418 GRX_GRXb_1_3_like Glut 97.1 0.0019 4.2E-08 44.7 6.5 54 77-138 2-60 (75)
259 TIGR02181 GRX_bact Glutaredoxi 97.1 0.0013 2.9E-08 46.1 5.5 54 77-138 1-58 (79)
260 PHA03050 glutaredoxin; Provisi 97.1 0.002 4.4E-08 48.1 6.7 66 66-138 6-78 (108)
261 KOG0907 Thioredoxin [Posttrans 97.1 0.0039 8.5E-08 46.3 7.8 81 284-371 22-104 (106)
262 TIGR02189 GlrX-like_plant Glut 97.1 0.0016 3.5E-08 47.9 5.7 53 77-137 10-69 (99)
263 cd02951 SoxW SoxW family; SoxW 97.0 0.005 1.1E-07 47.6 8.7 93 281-375 11-121 (125)
264 cd03069 PDI_b_ERp57 PDIb famil 97.0 0.012 2.5E-07 43.9 10.2 90 62-159 7-103 (104)
265 cd03027 GRX_DEP Glutaredoxin ( 97.0 0.0032 7E-08 43.4 6.6 53 77-137 3-59 (73)
266 TIGR01295 PedC_BrcD bacterioci 96.9 0.0032 6.9E-08 48.3 6.7 101 268-370 8-121 (122)
267 PRK10954 periplasmic protein d 96.9 0.0064 1.4E-07 51.7 8.6 39 73-111 37-78 (207)
268 PRK15317 alkyl hydroperoxide r 96.9 0.19 4.2E-06 49.3 19.9 169 74-263 19-197 (517)
269 TIGR00365 monothiol glutaredox 96.8 0.0064 1.4E-07 44.5 7.3 64 65-137 4-75 (97)
270 cd02952 TRP14_like Human TRX-r 96.8 0.0055 1.2E-07 46.5 7.1 85 283-369 21-118 (119)
271 cd02986 DLP Dim1 family, Dim1- 96.8 0.0095 2.1E-07 44.4 7.8 73 172-247 4-85 (114)
272 COG1999 Uncharacterized protei 96.6 0.048 1E-06 46.1 12.2 106 56-161 50-205 (207)
273 COG0695 GrxC Glutaredoxin and 96.6 0.0067 1.5E-07 42.6 5.9 51 77-133 3-59 (80)
274 PF00837 T4_deiodinase: Iodoth 96.6 0.029 6.4E-07 47.5 10.4 64 49-112 75-141 (237)
275 KOG0908 Thioredoxin-like prote 96.6 0.013 2.8E-07 49.4 8.2 96 163-263 2-105 (288)
276 cd02972 DsbA_family DsbA famil 96.6 0.0078 1.7E-07 43.8 6.3 59 77-135 1-91 (98)
277 KOG2640 Thioredoxin [Function 96.5 0.0048 1E-07 53.8 5.2 87 73-161 76-163 (319)
278 TIGR03140 AhpF alkyl hydropero 96.4 0.62 1.3E-05 45.7 19.7 169 73-262 19-197 (515)
279 KOG3170 Conserved phosducin-li 96.3 0.039 8.4E-07 44.9 8.7 87 55-145 90-179 (240)
280 PRK10638 glutaredoxin 3; Provi 96.2 0.018 4E-07 40.7 6.2 54 77-138 4-61 (83)
281 cd03013 PRX5_like Peroxiredoxi 96.2 0.039 8.4E-07 44.4 8.6 43 73-115 29-75 (155)
282 cd03028 GRX_PICOT_like Glutare 96.1 0.02 4.3E-07 41.3 5.8 48 83-138 21-72 (90)
283 PF02630 SCO1-SenC: SCO1/SenC; 95.9 0.017 3.8E-07 47.4 5.6 60 56-115 35-98 (174)
284 TIGR00412 redox_disulf_2 small 95.9 0.072 1.6E-06 36.9 7.7 71 287-369 3-75 (76)
285 PRK00293 dipZ thiol:disulfide 95.8 0.071 1.5E-06 52.7 10.1 97 164-263 454-569 (571)
286 TIGR02740 TraF-like TraF-like 95.8 0.072 1.6E-06 47.2 9.1 89 285-375 169-266 (271)
287 COG0386 BtuE Glutathione perox 95.6 0.22 4.7E-06 39.0 10.0 103 56-160 8-160 (162)
288 PRK10824 glutaredoxin-4; Provi 95.6 0.043 9.3E-07 41.3 6.1 64 65-137 7-78 (115)
289 KOG1731 FAD-dependent sulfhydr 95.6 0.1 2.2E-06 49.7 9.7 201 163-377 40-273 (606)
290 PRK03147 thiol-disulfide oxido 95.5 0.17 3.6E-06 41.5 9.9 87 284-372 62-171 (173)
291 PF13098 Thioredoxin_2: Thiore 95.5 0.036 7.9E-07 41.7 5.4 85 283-369 5-112 (112)
292 TIGR02738 TrbB type-F conjugat 95.5 0.32 6.9E-06 38.9 10.9 87 285-373 53-153 (153)
293 cd03068 PDI_b_ERp72 PDIb famil 95.4 0.095 2.1E-06 39.1 7.2 87 275-371 10-106 (107)
294 KOG1752 Glutaredoxin and relat 95.3 0.083 1.8E-06 38.9 6.5 64 66-137 7-75 (104)
295 KOG3171 Conserved phosducin-li 95.2 0.064 1.4E-06 44.1 6.3 102 56-159 138-250 (273)
296 COG1331 Highly conserved prote 95.0 0.14 3.1E-06 50.1 9.0 79 61-139 31-121 (667)
297 cd02973 TRX_GRX_like Thioredox 95.0 0.19 4.1E-06 33.6 7.3 55 287-347 4-59 (67)
298 PF13743 Thioredoxin_5: Thiore 94.9 0.015 3.3E-07 47.8 1.9 153 79-251 2-169 (176)
299 PRK12759 bifunctional gluaredo 94.6 0.099 2.1E-06 49.4 6.7 51 77-133 4-66 (410)
300 cd02958 UAS UAS family; UAS is 94.5 0.53 1.1E-05 35.5 9.5 90 283-375 17-113 (114)
301 smart00594 UAS UAS domain. 94.3 0.46 1E-05 36.4 8.9 78 289-369 34-121 (122)
302 PF02114 Phosducin: Phosducin; 94.2 0.28 6E-06 43.1 8.3 99 163-264 126-238 (265)
303 PRK14018 trifunctional thiored 94.2 0.48 1E-05 45.8 10.4 91 280-373 53-173 (521)
304 KOG2603 Oligosaccharyltransfer 93.8 1.2 2.5E-05 39.4 11.0 119 254-377 28-170 (331)
305 cd02955 SSP411 TRX domain, SSP 93.6 0.61 1.3E-05 35.8 8.1 94 275-373 7-119 (124)
306 PRK13728 conjugal transfer pro 93.5 1 2.2E-05 37.0 9.7 89 286-374 73-172 (181)
307 cd03026 AhpF_NTD_C TRX-GRX-lik 93.3 0.5 1.1E-05 33.8 6.8 56 285-346 15-71 (89)
308 PF13728 TraF: F plasmid trans 93.1 0.69 1.5E-05 39.4 8.6 79 287-367 125-212 (215)
309 cd02959 ERp19 Endoplasmic reti 93.1 0.4 8.6E-06 36.5 6.4 70 281-352 17-88 (117)
310 KOG2792 Putative cytochrome C 93.1 0.72 1.6E-05 39.5 8.3 108 54-161 120-276 (280)
311 cd03011 TlpA_like_ScsD_MtbDsbE 92.9 0.44 9.5E-06 36.4 6.6 75 180-258 20-120 (123)
312 cd02966 TlpA_like_family TlpA- 92.8 0.93 2E-05 33.6 8.3 66 284-351 20-108 (116)
313 TIGR02739 TraF type-F conjugat 92.4 1.3 2.9E-05 38.6 9.5 87 287-375 155-250 (256)
314 COG4232 Thiol:disulfide interc 92.1 0.46 9.9E-06 45.8 6.7 96 165-263 457-567 (569)
315 cd02978 KaiB_like KaiB-like fa 91.5 1.3 2.7E-05 30.1 6.5 62 76-137 3-65 (72)
316 PF01323 DSBA: DSBA-like thior 90.8 2.7 5.8E-05 35.0 9.7 29 76-104 1-29 (193)
317 PF13905 Thioredoxin_8: Thiore 90.7 2.6 5.7E-05 30.2 8.4 39 286-324 5-46 (95)
318 PRK13703 conjugal pilus assemb 90.7 2.5 5.5E-05 36.6 9.4 87 287-375 148-243 (248)
319 TIGR02654 circ_KaiB circadian 90.6 1.3 2.9E-05 31.2 6.2 74 75-149 4-78 (87)
320 PRK09301 circadian clock prote 90.4 1.3 2.7E-05 32.4 6.0 75 74-149 6-81 (103)
321 TIGR00385 dsbE periplasmic pro 89.8 2.2 4.8E-05 34.9 8.1 87 283-374 63-172 (173)
322 PF13192 Thioredoxin_3: Thiore 89.7 4.2 9.2E-05 27.9 8.3 69 290-370 6-76 (76)
323 TIGR02661 MauD methylamine deh 89.6 3.3 7E-05 34.5 9.0 92 283-377 74-183 (189)
324 PF13778 DUF4174: Domain of un 89.5 6.1 0.00013 30.0 9.6 88 285-372 11-111 (118)
325 COG1651 DsbG Protein-disulfide 89.3 2.4 5.3E-05 36.9 8.5 36 119-159 207-242 (244)
326 cd02974 AhpF_NTD_N Alkyl hydro 89.3 5.4 0.00012 28.8 8.7 75 72-159 18-93 (94)
327 cd03009 TryX_like_TryX_NRX Try 88.7 2.8 6.1E-05 32.3 7.6 68 284-353 19-112 (131)
328 cd03031 GRX_GRX_like Glutaredo 88.7 1.7 3.7E-05 34.4 6.3 51 77-133 2-66 (147)
329 PF11009 DUF2847: Protein of u 88.6 1 2.2E-05 33.1 4.6 90 275-365 9-104 (105)
330 cd03074 PDI_b'_Calsequestrin_C 88.5 8 0.00017 28.4 10.6 100 60-159 5-119 (120)
331 cd03010 TlpA_like_DsbE TlpA-li 88.5 1.2 2.7E-05 34.1 5.4 73 180-255 25-125 (127)
332 PF06053 DUF929: Domain of unk 88.0 1.5 3.4E-05 37.8 6.0 59 69-135 54-113 (249)
333 PRK15412 thiol:disulfide inter 87.8 4.1 9E-05 33.7 8.5 88 283-375 68-178 (185)
334 PF13417 GST_N_3: Glutathione 87.1 7.5 0.00016 26.5 9.2 71 79-162 1-73 (75)
335 cd02964 TryX_like_family Trypa 87.0 4.6 9.9E-05 31.2 7.9 67 286-354 21-113 (132)
336 cd02969 PRX_like1 Peroxiredoxi 86.4 10 0.00022 30.8 10.0 92 284-377 26-156 (171)
337 PF05768 DUF836: Glutaredoxin- 86.0 2.4 5.1E-05 29.7 5.2 76 287-370 2-81 (81)
338 KOG0914 Thioredoxin-like prote 85.9 1.1 2.3E-05 37.4 3.7 62 285-349 146-214 (265)
339 PLN02919 haloacid dehalogenase 85.8 4.5 9.7E-05 43.5 9.3 90 283-374 420-537 (1057)
340 cd03040 GST_N_mPGES2 GST_N fam 85.5 4.5 9.8E-05 27.7 6.5 74 77-161 2-77 (77)
341 PHA02125 thioredoxin-like prot 85.3 3.2 7E-05 28.4 5.6 49 286-345 2-51 (75)
342 PHA03075 glutaredoxin-like pro 84.7 1.8 3.9E-05 32.1 4.0 36 74-113 2-37 (123)
343 cd02977 ArsC_family Arsenate R 83.9 1.4 3E-05 32.7 3.4 33 78-116 2-34 (105)
344 cd03037 GST_N_GRX2 GST_N famil 82.3 5.6 0.00012 26.7 5.7 68 79-157 3-70 (71)
345 TIGR02196 GlrX_YruB Glutaredox 82.2 8.5 0.00018 25.6 6.7 70 287-370 3-74 (74)
346 TIGR01617 arsC_related transcr 81.8 2.9 6.2E-05 31.7 4.5 35 78-118 2-36 (117)
347 PLN02399 phospholipid hydroper 80.7 21 0.00045 30.9 9.8 91 284-374 100-235 (236)
348 COG3019 Predicted metal-bindin 80.5 25 0.00054 27.3 10.0 75 75-160 26-104 (149)
349 TIGR02742 TrbC_Ftype type-F co 80.5 6.2 0.00014 30.5 5.9 48 112-159 56-114 (130)
350 TIGR00762 DegV EDD domain prot 80.5 10 0.00023 33.7 8.3 156 113-283 9-168 (275)
351 cd02991 UAS_ETEA UAS family, E 80.4 23 0.00049 26.8 9.9 68 305-375 44-115 (116)
352 PF13778 DUF4174: Domain of un 80.3 23 0.0005 26.8 9.0 91 68-159 5-111 (118)
353 PTZ00056 glutathione peroxidas 79.9 14 0.00031 31.0 8.5 93 284-376 40-181 (199)
354 cd03041 GST_N_2GST_N GST_N fam 79.2 18 0.00038 24.8 8.3 70 78-159 3-76 (77)
355 cd03060 GST_N_Omega_like GST_N 79.1 5.8 0.00013 26.7 4.9 51 78-132 2-53 (71)
356 cd03036 ArsC_like Arsenate Red 79.0 3.2 6.9E-05 31.1 3.8 34 78-117 2-35 (111)
357 COG0450 AhpC Peroxiredoxin [Po 78.1 32 0.0007 28.5 9.5 86 74-159 34-160 (194)
358 PF00255 GSHPx: Glutathione pe 77.4 4 8.7E-05 30.4 3.9 56 59-115 7-63 (108)
359 KOG1672 ATP binding protein [P 77.2 12 0.00025 30.9 6.6 76 162-240 66-147 (211)
360 PF09673 TrbC_Ftype: Type-F co 76.9 8.3 0.00018 29.0 5.5 45 90-136 36-80 (113)
361 cd02967 mauD Methylamine utili 76.7 12 0.00027 27.7 6.6 54 283-337 21-77 (114)
362 PRK01655 spxA transcriptional 75.8 5.1 0.00011 31.1 4.3 35 77-117 2-36 (131)
363 PF07449 HyaE: Hydrogenase-1 e 74.7 8.4 0.00018 28.6 4.9 76 269-349 12-91 (107)
364 KOG3170 Conserved phosducin-li 74.6 47 0.001 27.6 9.4 98 162-262 91-199 (240)
365 cd03035 ArsC_Yffb Arsenate Red 74.1 3.2 6.9E-05 30.8 2.6 33 78-116 2-34 (105)
366 PF04592 SelP_N: Selenoprotein 73.8 5.4 0.00012 33.9 4.1 44 71-114 24-71 (238)
367 COG3531 Predicted protein-disu 71.8 8.5 0.00018 31.8 4.6 44 117-160 164-209 (212)
368 PF07689 KaiB: KaiB domain; I 71.7 3 6.4E-05 29.3 1.8 55 80-134 3-58 (82)
369 KOG2507 Ubiquitin regulatory p 70.7 37 0.00081 31.7 8.9 89 72-160 17-111 (506)
370 PF13743 Thioredoxin_5: Thiore 70.6 3.1 6.7E-05 34.2 2.1 36 117-152 137-174 (176)
371 cd01659 TRX_superfamily Thiore 70.2 23 0.0005 22.0 6.5 55 289-349 4-62 (69)
372 cd03059 GST_N_SspA GST_N famil 70.1 29 0.00063 23.1 6.9 69 78-158 2-71 (73)
373 cd03008 TryX_like_RdCVF Trypar 70.0 35 0.00077 27.0 7.8 40 284-323 26-75 (146)
374 cd00570 GST_N_family Glutathio 68.0 10 0.00022 24.7 3.9 51 79-133 3-55 (71)
375 PLN02412 probable glutathione 67.4 46 0.00099 27.0 8.3 38 284-321 30-70 (167)
376 KOG1651 Glutathione peroxidase 67.1 37 0.0008 27.3 7.2 97 56-162 17-127 (171)
377 cd02960 AGR Anterior Gradient 66.9 26 0.00057 27.1 6.3 29 171-199 14-42 (130)
378 cd03051 GST_N_GTT2_like GST_N 65.6 15 0.00033 24.5 4.5 52 78-133 2-57 (74)
379 cd03032 ArsC_Spx Arsenate Redu 65.5 15 0.00033 27.6 4.8 34 77-116 2-35 (115)
380 COG4545 Glutaredoxin-related p 65.5 14 0.00031 25.0 3.9 56 78-140 5-76 (85)
381 cd02990 UAS_FAF1 UAS family, F 62.6 72 0.0016 24.9 11.5 90 70-160 18-133 (136)
382 PF13899 Thioredoxin_7: Thiore 62.6 17 0.00037 25.2 4.4 62 282-349 16-82 (82)
383 KOG3171 Conserved phosducin-li 61.2 36 0.00078 28.6 6.3 100 163-265 139-252 (273)
384 PRK12559 transcriptional regul 61.2 10 0.00022 29.4 3.1 34 77-116 2-35 (131)
385 cd03012 TlpA_like_DipZ_like Tl 59.6 67 0.0014 24.3 7.6 38 284-321 24-64 (126)
386 COG2761 FrnE Predicted dithiol 58.5 23 0.0005 30.2 5.0 43 118-164 175-217 (225)
387 PRK10299 PhoPQ regulatory prot 56.9 13 0.00029 22.4 2.3 18 1-18 1-18 (47)
388 PRK11200 grxA glutaredoxin 1; 56.4 46 0.001 23.2 5.8 77 287-372 3-82 (85)
389 COG0821 gcpE 1-hydroxy-2-methy 56.3 19 0.0004 32.5 4.2 76 85-160 264-351 (361)
390 COG2143 Thioredoxin-related pr 56.1 1E+02 0.0022 24.6 8.0 41 215-258 103-143 (182)
391 cd03045 GST_N_Delta_Epsilon GS 54.2 30 0.00066 23.1 4.4 51 78-132 2-56 (74)
392 cd03055 GST_N_Omega GST_N fami 52.6 69 0.0015 22.6 6.2 53 77-133 19-72 (89)
393 PF04551 GcpE: GcpE protein; 52.5 16 0.00034 33.4 3.3 75 85-159 271-358 (359)
394 PRK13344 spxA transcriptional 52.3 17 0.00037 28.2 3.1 34 77-116 2-35 (132)
395 PF14595 Thioredoxin_9: Thiore 51.5 58 0.0013 25.1 5.9 72 169-240 29-107 (129)
396 cd03025 DsbA_FrnE_like DsbA fa 51.5 22 0.00047 29.4 3.9 28 77-104 3-30 (193)
397 KOG0852 Alkyl hydroperoxide re 51.0 99 0.0022 25.2 7.1 85 72-157 32-158 (196)
398 PF08534 Redoxin: Redoxin; In 50.2 49 0.0011 25.8 5.6 51 283-333 28-82 (146)
399 PF08806 Sep15_SelM: Sep15/Sel 50.1 25 0.00055 24.4 3.3 34 127-160 41-76 (78)
400 cd03024 DsbA_FrnE DsbA family, 49.4 23 0.00051 29.5 3.8 36 117-156 165-200 (201)
401 TIGR02180 GRX_euk Glutaredoxin 47.8 59 0.0013 22.2 5.2 56 287-346 2-60 (84)
402 PF04134 DUF393: Protein of un 46.8 31 0.00066 25.7 3.8 57 80-138 2-61 (114)
403 PF02966 DIM1: Mitosis protein 46.2 1.4E+02 0.003 23.1 9.9 50 285-337 22-73 (133)
404 PF09822 ABC_transp_aux: ABC-t 44.9 2.2E+02 0.0048 25.1 12.6 73 56-128 7-89 (271)
405 PF02645 DegV: Uncharacterised 44.8 99 0.0021 27.5 7.3 101 113-216 10-116 (280)
406 PHA02291 hypothetical protein 44.7 26 0.00056 25.5 2.7 23 1-23 1-23 (132)
407 PRK13730 conjugal transfer pil 44.6 45 0.00097 27.9 4.5 43 115-158 150-192 (212)
408 cd03022 DsbA_HCCA_Iso DsbA fam 43.5 32 0.00069 28.3 3.8 34 118-156 158-191 (192)
409 PF09695 YtfJ_HI0045: Bacteria 43.3 74 0.0016 25.5 5.3 65 304-374 92-159 (160)
410 cd03033 ArsC_15kD Arsenate Red 42.9 31 0.00068 25.9 3.2 33 77-115 2-34 (113)
411 KOG1422 Intracellular Cl- chan 42.3 1.3E+02 0.0029 25.3 6.8 70 84-164 20-89 (221)
412 KOG4498 Uncharacterized conser 41.8 47 0.001 27.3 4.1 47 66-112 44-91 (197)
413 cd03015 PRX_Typ2cys Peroxiredo 41.5 1.9E+02 0.0041 23.4 9.6 39 284-322 30-72 (173)
414 KOG0911 Glutaredoxin-related p 41.2 2E+02 0.0043 24.6 7.8 71 165-240 4-80 (227)
415 PF11337 DUF3139: Protein of u 40.6 35 0.00077 24.0 3.0 8 1-8 1-8 (85)
416 KOG0913 Thiol-disulfide isomer 40.4 18 0.00038 30.9 1.6 93 169-268 30-130 (248)
417 PTZ00256 glutathione peroxidas 39.0 2.2E+02 0.0047 23.4 9.4 32 290-321 49-82 (183)
418 PF03190 Thioredox_DsbH: Prote 37.1 81 0.0018 25.5 4.8 94 255-353 7-115 (163)
419 PRK00366 ispG 4-hydroxy-3-meth 36.9 46 0.00099 30.5 3.7 75 85-159 271-356 (360)
420 COG3592 Uncharacterized conser 35.9 41 0.00088 22.4 2.4 33 347-379 39-72 (74)
421 cd02974 AhpF_NTD_N Alkyl hydro 34.3 1.8E+02 0.0039 21.0 7.2 71 180-261 19-91 (94)
422 COG0278 Glutaredoxin-related p 34.1 1.9E+02 0.0041 21.2 6.2 68 65-137 7-79 (105)
423 KOG3414 Component of the U4/U6 33.5 2.2E+02 0.0048 21.8 9.0 60 285-349 25-87 (142)
424 COG1393 ArsC Arsenate reductas 33.4 56 0.0012 24.7 3.2 21 77-97 3-23 (117)
425 TIGR01626 ytfJ_HI0045 conserve 33.3 2.8E+02 0.0061 23.0 7.8 64 301-370 111-177 (184)
426 KOG1364 Predicted ubiquitin re 32.9 1.6E+02 0.0034 26.9 6.4 66 317-387 136-209 (356)
427 PF00578 AhpC-TSA: AhpC/TSA fa 32.3 2.1E+02 0.0045 21.2 7.7 53 283-335 25-81 (124)
428 TIGR02540 gpx7 putative glutat 31.4 2.6E+02 0.0056 22.0 9.3 35 287-321 27-63 (153)
429 PF06953 ArsD: Arsenical resis 30.6 2.5E+02 0.0054 21.5 6.7 53 105-160 40-102 (123)
430 TIGR00612 ispG_gcpE 1-hydroxy- 30.4 38 0.00083 30.7 2.2 42 105-146 289-335 (346)
431 cd03030 GRX_SH3BGR Glutaredoxi 30.0 1.9E+02 0.004 20.8 5.3 49 84-132 8-65 (92)
432 PRK13617 psbV cytochrome c-550 29.4 34 0.00075 27.7 1.6 33 50-90 43-75 (170)
433 cd02970 PRX_like2 Peroxiredoxi 28.7 2.3E+02 0.0049 21.8 6.3 67 284-355 24-94 (149)
434 cd02968 SCO SCO (an acronym fo 28.6 2.1E+02 0.0045 21.9 6.1 37 286-322 26-68 (142)
435 cd03025 DsbA_FrnE_like DsbA fa 28.6 77 0.0017 26.1 3.7 21 118-138 160-180 (193)
436 cd03034 ArsC_ArsC Arsenate Red 28.0 60 0.0013 24.2 2.6 33 78-116 2-34 (112)
437 PTZ00253 tryparedoxin peroxida 27.8 3.6E+02 0.0077 22.4 8.4 61 329-389 111-178 (199)
438 KOG2244 Highly conserved prote 27.4 60 0.0013 31.5 3.0 75 61-135 100-185 (786)
439 cd03056 GST_N_4 GST_N family, 27.1 1.5E+02 0.0033 19.3 4.4 52 78-133 2-57 (73)
440 cd03052 GST_N_GDAP1 GST_N fami 27.0 2E+02 0.0043 19.2 5.4 54 78-137 2-59 (73)
441 cd03018 PRX_AhpE_like Peroxire 25.1 1.8E+02 0.0039 22.5 5.1 40 284-323 29-72 (149)
442 COG3117 Uncharacterized protei 25.1 2.1E+02 0.0045 23.7 5.3 19 1-19 2-20 (188)
443 TIGR00014 arsC arsenate reduct 24.8 74 0.0016 23.8 2.6 33 78-116 2-34 (114)
444 COG3011 Predicted thiol-disulf 23.9 3.6E+02 0.0077 21.1 6.8 63 73-137 6-70 (137)
445 KOG2507 Ubiquitin regulatory p 23.7 3.6E+02 0.0078 25.6 7.0 88 285-375 20-113 (506)
446 TIGR02652 conserved hypothetic 23.6 29 0.00063 26.7 0.2 70 84-178 11-84 (163)
447 PF09654 DUF2396: Protein of u 23.5 28 0.00061 26.7 0.1 70 84-178 8-81 (161)
448 PF05984 Cytomega_UL20A: Cytom 23.0 84 0.0018 21.8 2.3 14 1-14 1-14 (100)
449 PF07315 DUF1462: Protein of u 22.1 3E+02 0.0066 19.7 5.7 61 305-369 28-92 (93)
450 PF09695 YtfJ_HI0045: Bacteria 22.0 3E+02 0.0065 22.2 5.5 42 116-157 112-155 (160)
451 COG3411 Ferredoxin [Energy pro 21.5 2E+02 0.0043 19.1 3.7 33 341-377 17-50 (64)
452 TIGR01616 nitro_assoc nitrogen 21.0 1.3E+02 0.0028 23.1 3.3 22 76-97 2-23 (126)
453 PF04908 SH3BGR: SH3-binding, 21.0 1.3E+02 0.0029 21.9 3.2 44 289-332 6-50 (99)
454 COG3634 AhpF Alkyl hydroperoxi 20.8 3.6E+02 0.0077 25.1 6.3 81 72-157 115-195 (520)
455 PF10731 Anophelin: Thrombin i 20.4 1.3E+02 0.0027 19.5 2.5 15 1-15 1-15 (65)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-53 Score=382.97 Aligned_cols=345 Identities=31% Similarity=0.450 Sum_probs=307.7
Q ss_pred cCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC---CcEEEEEeCcccHhHHHhCCCcccce
Q 015527 54 YAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPT 130 (405)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt 130 (405)
....+..|+.++|+..+..+..++|.||||||+||++++|+++++|..+.. .+.+++|||+.+.++|.+|+|++|||
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPT 102 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPT 102 (493)
T ss_pred cccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCe
Confidence 457899999999999999999999999999999999999999999999977 79999999999999999999999999
Q ss_pred EEEEeCCeeeeeecCCCCHHHHHHHHHhhhcCCccccCChhHHHHHhccCCeEEEEEEcCCCCccHHHHHHHhccCCcce
Q 015527 131 LYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVN 210 (405)
Q Consensus 131 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~l~~~~~~~v~f~~~~~~~~~~~~~~~a~~~~~~~ 210 (405)
+.+|++|+....|.|+++++.|..|+.+..+|++..+.+.++.+.++...+..+|+||.+..+.....+..++.+.+++.
T Consensus 103 lkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~~l~~d~~ 182 (493)
T KOG0190|consen 103 LKIFRNGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAASKLRDDYK 182 (493)
T ss_pred EEEEecCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHHhccccce
Confidence 99999996679999999999999999999999999999999999999999999999999888777444555669999999
Q ss_pred EEEecCHHHHhhcCCCCCCCCCeEEEeecCCCccccccCCCCHHHHHHHHhccCCCCccccccccccccccCCc-cEEEE
Q 015527 211 FYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPR-KQLWL 289 (405)
Q Consensus 211 f~~~~~~~l~~~~~~~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~-~~~i~ 289 (405)
|+++++.++++.++..... .+.++++++.+.....|.|+++.+.|..||..++.|++..+|..+...++++.. ..+++
T Consensus 183 F~~ts~~~~~~~~~~~~~~-~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~ 261 (493)
T KOG0190|consen 183 FAHTSDSDVAKKLELNTEG-TFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDF 261 (493)
T ss_pred eeccCcHhHHhhccCCCCC-cceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccccceeE
Confidence 9999999999999987311 345888998888888899999999999999999999999999999998888866 55666
Q ss_pred EecCC--CcHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCc-EEEEEeCCCccccCCC-CCCHHHH
Q 015527 290 FAPAY--GSDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPR-VIAYSARDAKKYVLNG-ELTLSSI 365 (405)
Q Consensus 290 f~~~~--~~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p-~i~i~~~~~~~y~~~~-~~~~~~l 365 (405)
|.+.. ..+.+.+.++++|++++++++|+.+|..+.. +.++.||+....+| .+++.+.++.+|.+++ +.+.++|
T Consensus 262 ~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~~~---~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~i 338 (493)
T KOG0190|consen 262 FVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDPESFA---RVLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQENI 338 (493)
T ss_pred EeccccccHHHHHHHHHHHHHhcccceEEEEEChHHhh---HHHHhcCcccccCCeeEEeeccccccccCccccccHHHH
Confidence 66544 5889999999999999999999999777654 58899999977777 4444444889999987 5999999
Q ss_pred HHHHHHHhcCce--eeecccCchhhh-----cCccCcccceeee
Q 015527 366 KSFGEEFLEDKL--LNQSDQISETIL-----KLPSQSRASYQLR 402 (405)
Q Consensus 366 ~~Fi~~~~~Gkl--~~kse~iPe~~~-----~~~~~~~~~~~~~ 402 (405)
..|+.++++|++ ++|||||||+|+ .+|++||+++++.
T Consensus 339 e~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~d 382 (493)
T KOG0190|consen 339 ESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLD 382 (493)
T ss_pred HHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhc
Confidence 999999999999 999999999854 5799999999875
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=2.5e-44 Score=346.67 Aligned_cols=329 Identities=23% Similarity=0.373 Sum_probs=280.9
Q ss_pred CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC---CcEEEEEeCcccHhHHHhCCCcccceEE
Q 015527 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLY 132 (405)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~ 132 (405)
..+..++.++|+..+.+++.++|.|||+||++|+++.|.|.++++.+++ ++.++.|||+.++++|++|+|.++||++
T Consensus 32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111 (477)
T ss_pred CCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence 4689999999999999899999999999999999999999999988754 6999999999999999999999999999
Q ss_pred EEeCCeeeeeecCCCCHHHHHHHHHhhhcCCccccCChhHHHHHhccCCeEEEEEEcCCCCccHHHHHHHh-ccCCcceE
Q 015527 133 LFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNF 211 (405)
Q Consensus 133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~l~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f 211 (405)
+|++|+.. +|.|.++.+.|.+|+.+.+++++..+.+.+++..+.+.....+++++...++...+.|.++| .+++.+.|
T Consensus 112 ~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F 190 (477)
T PTZ00102 112 FFNKGNPV-NYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKF 190 (477)
T ss_pred EEECCceE-EecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccceE
Confidence 99988655 99999999999999999999999999999888887777778888888877788889999888 56677888
Q ss_pred EEecCHHHHhhcCCCCCCCCCeEEEeecCCCccccccCCCCHHHHHHHHhccCCCCccccccccccccccCCccEEEEEe
Q 015527 212 YQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFA 291 (405)
Q Consensus 212 ~~~~~~~l~~~~~~~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~i~f~ 291 (405)
+...+. ..+.+.+++..+.....|.| .+.++|.+||..+++|++.+++.+++..++..+.+.++++.
T Consensus 191 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~-~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (477)
T PTZ00102 191 FVKKHE------------GKNKIYVLHKDEEGVELFMG-KTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFCG 257 (477)
T ss_pred EEEcCC------------CCCcEEEEecCCCCcccCCC-CCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEec
Confidence 765432 24778888876544444554 47899999999999999999999999999988876666554
Q ss_pred cCCCcHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCccccCCCC----CCHHHHHH
Q 015527 292 PAYGSDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGE----LTLSSIKS 367 (405)
Q Consensus 292 ~~~~~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~~y~~~~~----~~~~~l~~ 367 (405)
...+.+++.+.++++|+++++++.|+++|++... .++++.+|+.. .|.+++.+..+ +|.+.+. ++.++|.+
T Consensus 258 ~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~--~~~~~~~gi~~--~P~~~i~~~~~-~y~~~~~~~~~~~~~~l~~ 332 (477)
T PTZ00102 258 TTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFG--SHAKEHLLIEE--FPGLAYQSPAG-RYLLPPAKESFDSVEALIE 332 (477)
T ss_pred CHHHHHHHHHHHHHHHHhccCceEEEEEechhcc--hhHHHhcCccc--CceEEEEcCCc-ccCCCccccccCCHHHHHH
Confidence 4444667889999999999999999999999753 24788999975 78888877544 5666543 78999999
Q ss_pred HHHHHhcCce--eeecccCchh----hhcCccCcccceeeec
Q 015527 368 FGEEFLEDKL--LNQSDQISET----ILKLPSQSRASYQLRT 403 (405)
Q Consensus 368 Fi~~~~~Gkl--~~kse~iPe~----~~~~~~~~~~~~~~~~ 403 (405)
|++++++|++ +++|||+|++ +.+++++||++.+++.
T Consensus 333 Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~ 374 (477)
T PTZ00102 333 FFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKS 374 (477)
T ss_pred HHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcC
Confidence 9999999999 8999999986 7889999999886654
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=1.1e-43 Score=341.62 Aligned_cols=339 Identities=26% Similarity=0.406 Sum_probs=292.8
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC---CcEEEEEeCcccHhHHHhCCCcccceEEE
Q 015527 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYL 133 (405)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 133 (405)
.+..++.++|++.+.++++++|.|||+||++|+++.|.|.++++.+.+ ++.|+.|||++++++|++|+|.++||+++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 578899999999999999999999999999999999999999998865 49999999999999999999999999999
Q ss_pred EeCCee-eeeecCCCCHHHHHHHHHhhhcCCccccCChhHHHHHhccCCeEEEEEEcCCCCccHHHHHHHh-ccCCcce-
Q 015527 134 FVAGVR-QFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVN- 210 (405)
Q Consensus 134 ~~~g~~-~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~l~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~- 210 (405)
|++|+. ..+|.|.++.+.|.+|+.+.+++++..+++.++++.++..++..+|+|+.+..+.....|.++| .+...+.
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~ 161 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFF 161 (462)
T ss_pred EeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccce
Confidence 998866 7899999999999999999999999999999999999999999999999877778888999988 4555555
Q ss_pred EEEecCHHHHhhcCCCCCCCCCeEEEeecCCCcc--ccccCCC--CHHHHHHHHhccCCCCccccccccccccccCCccE
Q 015527 211 FYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKA--TPFRHQF--TRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQ 286 (405)
Q Consensus 211 f~~~~~~~l~~~~~~~~~~~~p~i~~~~~~~~~~--~~y~g~~--~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~ 286 (405)
|+.+.+..+.+.++... +.+++++..+... ..|.|+. +.++|.+||..+++|++.+++.+++..++..+ |.
T Consensus 162 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~~ 236 (462)
T TIGR01130 162 FAHSSDVAAFAKLGAFP----DSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-PL 236 (462)
T ss_pred EEecCCHHHHhhcCCCC----CcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-Cc
Confidence 55566777888888763 7777777544333 3677764 55899999999999999999999999999877 65
Q ss_pred EEEEecCCC----cHHHHHHHHHHHHHhcC-cEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCC-ccccCCC-C
Q 015527 287 LWLFAPAYG----SDKVILTFEEVAKALKG-KLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDA-KKYVLNG-E 359 (405)
Q Consensus 287 ~i~f~~~~~----~~~~~~~~~~va~~~~~-~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~-~~y~~~~-~ 359 (405)
+++|...+. ++++.+.++++|+++++ ++.|+++|+.... ++++.+|++....|.+++++..+ .+|.+.+ .
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~---~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~ 313 (462)
T TIGR01130 237 VVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFG---RELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEE 313 (462)
T ss_pred eeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhH---HHHHHcCCCccCCceEEEEeCCcccccCCCcCC
Confidence 565554322 37889999999999997 8999999998754 78899999877799999998854 6788877 8
Q ss_pred CCHHHHHHHHHHHhcCce--eeecccCchh----hhcCccCcccceeeec
Q 015527 360 LTLSSIKSFGEEFLEDKL--LNQSDQISET----ILKLPSQSRASYQLRT 403 (405)
Q Consensus 360 ~~~~~l~~Fi~~~~~Gkl--~~kse~iPe~----~~~~~~~~~~~~~~~~ 403 (405)
++.++|.+|++++++|++ +++||++|++ +.+++++||++.+++.
T Consensus 314 ~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~ 363 (462)
T TIGR01130 314 FSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDE 363 (462)
T ss_pred CCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccC
Confidence 999999999999999999 8999999983 7789999999887653
No 4
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=100.00 E-value=3.4e-39 Score=268.62 Aligned_cols=308 Identities=20% Similarity=0.310 Sum_probs=258.2
Q ss_pred cChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-----CcEEEEEeCcccHhHHHhCCCcccceEEEEe
Q 015527 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-----EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (405)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-----~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (405)
++..|++.++..++.++|.|||+||+.++.++|.|+++|+.++. ++.++.|||+.+..++.+|.|..|||+.+|+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 35678889999999999999999999999999999999988765 7999999999999999999999999999999
Q ss_pred CCeeee-eecCCCCHHHHHHHHHhhhcCCccccCChhHHHHHhccCCeEEEEEEcCCCCccHHHHHHHh-ccCCcceEEE
Q 015527 136 AGVRQF-QFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQ 213 (405)
Q Consensus 136 ~g~~~~-~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~l~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~ 213 (405)
+|.... .|.|.++.+++.+||++++..++.++.+.++++......+..+|+||...+++.+..+..+| -++.++.|..
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~lr~dc~f~V 160 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASLLRDDCVFLV 160 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHHHhhccEEEe
Confidence 996554 89999999999999999999999999999999999888888999999999999999999988 5788999887
Q ss_pred ecCHHHHhhcCCCCCCCCCeEEEeecCC-CccccccCCCCH-HHHHHHHhccCCCCccccccccccccccCCccEEEEEe
Q 015527 214 TTSADVAEFFHIHPKSKRPALIFLHLEA-GKATPFRHQFTR-LAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFA 291 (405)
Q Consensus 214 ~~~~~l~~~~~~~~~~~~p~i~~~~~~~-~~~~~y~g~~~~-~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~i~f~ 291 (405)
-....... .... +.+ +++++... .....|.|+++. +.+..||.+.+.|+|+++|.+|.+++.+.+.|.+|+|.
T Consensus 161 ~~gD~~~~-~~~~---~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflILf~ 235 (375)
T KOG0912|consen 161 GFGDLLKP-HEPP---GKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLILFR 235 (375)
T ss_pred eccccccC-CCCC---CCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEEEe
Confidence 65432111 1111 223 45565432 223379999766 99999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHhcC---cEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCccccCC---CCCCHHHH
Q 015527 292 PAYGSDKVILTFEEVAKALKG---KLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLN---GELTLSSI 365 (405)
Q Consensus 292 ~~~~~~~~~~~~~~va~~~~~---~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~~y~~~---~~~~~~~l 365 (405)
.+++.+....--..+++++.+ .++|...||.... .-+..+|-+.+++|+++|.+. .+.|.+. +...+..|
T Consensus 236 ~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~---hpL~HlgKs~~DLPviaIDsF-~Hmylfp~f~di~~pGkL 311 (375)
T KOG0912|consen 236 KKDDKESEKIFKNAIARELDDETLAINFLTADGKVFK---HPLRHLGKSPDDLPVIAIDSF-RHMYLFPDFNDINIPGKL 311 (375)
T ss_pred cCCcccHHHHHHHHHHHHhhhhhhccceeecCcceec---chHHHhCCCcccCcEEEeecc-ceeeecCchhhhcCccHH
Confidence 988844444334466676653 3899999999764 567899999999999999876 4666643 46778999
Q ss_pred HHHHHHHhcCce
Q 015527 366 KSFGEEFLEDKL 377 (405)
Q Consensus 366 ~~Fi~~~~~Gkl 377 (405)
.+|+.|..+|++
T Consensus 312 kqFv~DL~sgkl 323 (375)
T KOG0912|consen 312 KQFVADLHSGKL 323 (375)
T ss_pred HHHHHHHhCchh
Confidence 999999999999
No 5
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=100.00 E-value=8.3e-34 Score=241.80 Aligned_cols=320 Identities=17% Similarity=0.235 Sum_probs=243.2
Q ss_pred CccCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHhh-----hHH-HHHHHHHHccC-CcEEEEEeCcccHhHHHhCC
Q 015527 52 LLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKK-----LAP-EFAAAAKMLKG-EADLVMVDAYLEKDLAKEYN 124 (405)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~-----~~~-~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~ 124 (405)
.+....+++||.+||.+.+++.+..+|+|+.+--..--. +.. .++-+|+.+.. +|.|+.||..++..+++++|
T Consensus 30 YDGkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLg 109 (383)
T PF01216_consen 30 YDGKDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLG 109 (383)
T ss_dssp -SSS--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT
T ss_pred CCCccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcC
Confidence 345678999999999999999999999999875322111 112 34445555555 89999999999999999999
Q ss_pred CcccceEEEEeCCeeeeeecCCCCHHHHHHHHHhhhcCCccccCChhHHHHHhcc-CCeEEEEEEcCCCCccHHHHHHHh
Q 015527 125 ILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTV-ESKLVLGFLHDLEGMESEELAAAS 203 (405)
Q Consensus 125 i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~l~~-~~~~~v~f~~~~~~~~~~~~~~~a 203 (405)
+...+++++|++| .+..|.|.++++.|++||...+..|+..|++..+++.|-+- ..+.+|+||.+..++.++.|..+|
T Consensus 110 v~E~~SiyVfkd~-~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~FeeAA 188 (383)
T PF01216_consen 110 VEEEGSIYVFKDG-EVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKEFEEAA 188 (383)
T ss_dssp --STTEEEEEETT-EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHHHHHHH
T ss_pred ccccCcEEEEECC-cEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHHHHHHH
Confidence 9999999999999 88899999999999999999999999999999999988874 479999999998888999999999
Q ss_pred -ccCCcceEEEecCHHHHhhcCCCCCCCCCeEEEeecCCCccccccCC-CCHHHHHHHHhccCCCCcccccccccccccc
Q 015527 204 -KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ-FTRLAIANFVTHTKHPLVVTLTIHNAQFVFQ 281 (405)
Q Consensus 204 -~~~~~~~f~~~~~~~l~~~~~~~~~~~~p~i~~~~~~~~~~~~y~g~-~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~ 281 (405)
.+...++|+++.++.++++++++ ...+-+|++....++..+|+ .+.+++.+||+.|+.|.++.++.+++.....
T Consensus 189 e~F~p~IkFfAtfd~~vAk~L~lK----~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m~e~We 264 (383)
T PF01216_consen 189 EHFQPYIKFFATFDKKVAKKLGLK----LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDMFETWE 264 (383)
T ss_dssp HHCTTTSEEEEE-SHHHHHHHT-S----TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGGHHHHHH
T ss_pred HhhcCceeEEEEecchhhhhcCcc----ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhhhhhhhc
Confidence 79999999999999999999998 58999999998889999887 6779999999999999999999999888887
Q ss_pred CCc--cEEEEEecCCC--cHHHHHHHHHHHHHhcC--cEEEEEEEcCCcch-hhhhhhhcCCCCCCCcEEEEEeC---CC
Q 015527 282 DPR--KQLWLFAPAYG--SDKVILTFEEVAKALKG--KLLHVYVEMNSEGV-GRRVSQEFGVSGNAPRVIAYSAR---DA 351 (405)
Q Consensus 282 ~~~--~~~i~f~~~~~--~~~~~~~~~~va~~~~~--~~~f~~id~~~~~~-~~~~~~~~gi~~~~~p~i~i~~~---~~ 351 (405)
... .+++.|+..++ -.+++..++++|+...+ .+.++|||.+++++ ...+.+.|||+-. .|.|.+.+. .+
T Consensus 265 dd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~-~PqIGvVnvtdads 343 (383)
T PF01216_consen 265 DDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLS-RPQIGVVNVTDADS 343 (383)
T ss_dssp SSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TT-S-EEEEEETTTSEE
T ss_pred ccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcccc-CCceeEEecccccc
Confidence 766 77888988766 45789999999999875 59999999999843 6677899999876 589999888 34
Q ss_pred ccccCCC---CCCHHHHHHHHHHHhcCce
Q 015527 352 KKYVLNG---ELTLSSIKSFGEEFLEDKL 377 (405)
Q Consensus 352 ~~y~~~~---~~~~~~l~~Fi~~~~~Gkl 377 (405)
.++.|++ ..|.+.|+.||+|+++|++
T Consensus 344 vW~dm~d~~d~pt~~~LedWieDVlsg~i 372 (383)
T PF01216_consen 344 VWMDMDDDDDLPTAEELEDWIEDVLSGKI 372 (383)
T ss_dssp EEC-STTTSS---HHHHHHHHHHHHCTCC
T ss_pred chhccCCcccCCcHHHHHHHHHHHhcCCC
Confidence 5566664 4688999999999999987
No 6
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=100.00 E-value=8.8e-33 Score=230.08 Aligned_cols=290 Identities=18% Similarity=0.202 Sum_probs=222.5
Q ss_pred CCCcEEEEEecCCChhHhhhHHHHHHHHHHccC---CcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeeeeeecCCCC
Q 015527 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERT 148 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~ 148 (405)
....|+|.||||||.||+++.|.|.++..++++ .+.++++||+..+.++.+++|++|||+.+|++| ....|.|+++
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd-~a~dYRG~R~ 120 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD-HAIDYRGGRE 120 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC-eeeecCCCcc
Confidence 457899999999999999999999999888877 699999999999999999999999999999998 8999999999
Q ss_pred HHHHHHHHHhhhcCCccccCC-hhHHHHHhccCCeEEEEEEcCCCCccHHHHHHHhc-cCCcceEEEecCHHHHhhcCCC
Q 015527 149 RDVISAWVREKMTLGTYSITT-TDEAERILTVESKLVLGFLHDLEGMESEELAAASK-LHSDVNFYQTTSADVAEFFHIH 226 (405)
Q Consensus 149 ~~~l~~~i~~~~~~~~~~i~~-~~~~~~~l~~~~~~~v~f~~~~~~~~~~~~~~~a~-~~~~~~f~~~~~~~l~~~~~~~ 226 (405)
.++|.+|..+..++-+..+++ ..++..+...+.+..| |+....++....|.++|. .....+|+..+.+-+......+
T Consensus 121 Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffV-f~Gtge~PL~d~fidAASe~~~~a~FfSaseeVaPe~~~~k 199 (468)
T KOG4277|consen 121 KDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFV-FFGTGEGPLFDAFIDAASEKFSVARFFSASEEVAPEENDAK 199 (468)
T ss_pred HHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEE-EEeCCCCcHHHHHHHHhhhheeeeeeeccccccCCcccchh
Confidence 999999999999888877765 2344455555666655 677778999999999884 4444455554433333333444
Q ss_pred CCCCCCeEEEeecCCCccccccCCCCHHHHHHHHhccCCCCccccccccccccccCCccEEEEEecCC-------CcHHH
Q 015527 227 PKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAY-------GSDKV 299 (405)
Q Consensus 227 ~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~i~f~~~~-------~~~~~ 299 (405)
. .|++.+|++. .+..+ .+.+.++|..||+..++|.+-..+..++.++-..++.+++...+.. ...++
T Consensus 200 e---mpaV~VFKDe--tf~i~-de~dd~dLseWinRERf~~fLa~dgflL~EiG~sGKLVaLaVidEkhk~nns~eh~~~ 273 (468)
T KOG4277|consen 200 E---MPAVAVFKDE--TFEIE-DEGDDEDLSEWINRERFPGFLAADGFLLAEIGASGKLVALAVIDEKHKFNNSSEHREF 273 (468)
T ss_pred h---ccceEEEccc--eeEEE-ecCchhHHHHHHhHhhccchhhcccchHHHhCcCCceEEEEEeccccccCCcchhHHH
Confidence 3 6999999864 33333 2445789999999999999999999888888888874444444322 25678
Q ss_pred HHHHHHHHHHhc------CcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCccccCCC----CCCHHHHHHHH
Q 015527 300 ILTFEEVAKALK------GKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNG----ELTLSSIKSFG 369 (405)
Q Consensus 300 ~~~~~~va~~~~------~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~~y~~~~----~~~~~~l~~Fi 369 (405)
.+..+++|++++ +++.|+|+|+++.. +.+ .+-.+ ..|.+++++..+.-|.+.+ ..+.+++.+||
T Consensus 274 ~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~--nqi-lM~al---s~P~l~i~NtsnqeYfLse~d~qikniedilqFi 347 (468)
T KOG4277|consen 274 HKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLA--NQI-LMAAL---SEPHLFIFNTSNQEYFLSEDDPQIKNIEDILQFI 347 (468)
T ss_pred HHHHHHHHHHHHhChhhhhhceeeccchhHHH--HHH-HHHhh---cCCeEEEEecCchheeeccCChhhhhHHHHHHHH
Confidence 888899998876 46999999999643 222 23333 3588999988666666632 57889999999
Q ss_pred HHHhcC
Q 015527 370 EEFLED 375 (405)
Q Consensus 370 ~~~~~G 375 (405)
++-..|
T Consensus 348 entseg 353 (468)
T KOG4277|consen 348 ENTSEG 353 (468)
T ss_pred hccccc
Confidence 994444
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.91 E-value=6.2e-24 Score=159.95 Aligned_cols=102 Identities=17% Similarity=0.311 Sum_probs=95.1
Q ss_pred CCCcEEcChhhHHHH---HcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHH-HhCCCcccce
Q 015527 55 AKDVVSLNGKNFSEF---MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA-KEYNILAYPT 130 (405)
Q Consensus 55 ~~~~~~l~~~~~~~~---~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~-~~~~i~~~Pt 130 (405)
...++++++++|++. +.++++++|.|||+||++|+.++|.|+++++.+++.+.|++|||+++.++| ++|+|.++||
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence 357899999999986 578899999999999999999999999999999888999999999999999 5899999999
Q ss_pred EEEEeCCeeeeeecCCCCHHHHHHHH
Q 015527 131 LYLFVAGVRQFQFFGERTRDVISAWV 156 (405)
Q Consensus 131 ~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (405)
+.+|++|+...+|.|.++.+.|..|+
T Consensus 88 l~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 88 IHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred EEEEECCccceEEeCCCCHHHHHhhC
Confidence 99999998889999999999998873
No 8
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.90 E-value=3.7e-23 Score=155.08 Aligned_cols=99 Identities=23% Similarity=0.524 Sum_probs=94.3
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeC
Q 015527 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (405)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 136 (405)
.+++++.++|++.+.++++++|.|||+||++|+++.|.|+++++++++.+.|+.|||++++.+|++++|.++||+++|++
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 81 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPS 81 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcC
Confidence 57889999999999888999999999999999999999999999998889999999999999999999999999999999
Q ss_pred CeeeeeecCCCCHHHHHHH
Q 015527 137 GVRQFQFFGERTRDVISAW 155 (405)
Q Consensus 137 g~~~~~~~g~~~~~~l~~~ 155 (405)
|+...+|.|.++.+.|.+|
T Consensus 82 g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 82 GMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCCcccCCCCCCHHHHHhh
Confidence 9888999999999999876
No 9
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.89 E-value=2.7e-22 Score=168.43 Aligned_cols=177 Identities=25% Similarity=0.395 Sum_probs=152.9
Q ss_pred EcCCCCccHHHHHHHh-ccCCcceEEEecCHHHHhhcCCCCCCCCCeEEEeecCCCccccccCC-CCHHHHHHHHhccCC
Q 015527 188 LHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ-FTRLAIANFVTHTKH 265 (405)
Q Consensus 188 ~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~~~~~~~~p~i~~~~~~~~~~~~y~g~-~~~~~l~~fi~~~~~ 265 (405)
|.+.++...+.|.++| .+.+++.|+.+.+.++++.++++. |++++|++.++++..|.|. ++.++|.+||..+++
T Consensus 1 F~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~----p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~ 76 (184)
T PF13848_consen 1 FPDKDSELFEIFEEAAEKLKGDYQFGVTFNEELAKKYGIKE----PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF 76 (184)
T ss_dssp ESTTTSHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHCTCSS----SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS
T ss_pred CCCcccHHHHHHHHHHHhCcCCcEEEEEcHHHHHHHhCCCC----CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc
Confidence 3456677899999988 678899999999999999999984 9999999987789999998 899999999999999
Q ss_pred CCccccccccccccccCCcc-EEEEEecCCC--cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCc
Q 015527 266 PLVVTLTIHNAQFVFQDPRK-QLWLFAPAYG--SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPR 342 (405)
Q Consensus 266 p~v~~l~~~~~~~~~~~~~~-~~i~f~~~~~--~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p 342 (405)
|++.++|.+|+..+++.+.+ ++++|.+.+. .+.+.+.++++|+++++++.|+|+|++... ++++.+|+++...|
T Consensus 77 P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~---~~~~~~~i~~~~~P 153 (184)
T PF13848_consen 77 PLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFP---RLLKYFGIDEDDLP 153 (184)
T ss_dssp TSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTH---HHHHHTTTTTSSSS
T ss_pred ccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhH---HHHHHcCCCCccCC
Confidence 99999999999999999985 6777765433 678888999999999999999999999543 78899999988899
Q ss_pred EEEEEeC-CCcc-ccCCCCCCHHHHHHHHHH
Q 015527 343 VIAYSAR-DAKK-YVLNGELTLSSIKSFGEE 371 (405)
Q Consensus 343 ~i~i~~~-~~~~-y~~~~~~~~~~l~~Fi~~ 371 (405)
++++.+. ++.+ |.+.+.++.++|.+|++|
T Consensus 154 ~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 154 ALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 9999986 4443 445779999999999986
No 10
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.9e-23 Score=155.87 Aligned_cols=106 Identities=24% Similarity=0.395 Sum_probs=99.0
Q ss_pred CCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEE
Q 015527 56 KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (405)
Q Consensus 56 ~~~~~l~~~~~~~~~-~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 134 (405)
..+..++..+|++.+ +++.||+|.|||+||+||+.+.|.+++++.++.+.+.|+.||.+++.+++.+|+|.++||+++|
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 455678889998655 8889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeeeeecCCCCHHHHHHHHHhhhc
Q 015527 135 VAGVRQFQFFGERTRDVISAWVREKMT 161 (405)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (405)
++|+...++.|..+.+.+..||++.+.
T Consensus 123 knGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 123 KNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred ECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 999999999999999999999998763
No 11
>PRK10996 thioredoxin 2; Provisional
Probab=99.89 E-value=8.7e-22 Score=155.58 Aligned_cols=135 Identities=21% Similarity=0.408 Sum_probs=121.7
Q ss_pred CCCccccccCchhhhhhcccCCCCCCCccCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCC
Q 015527 26 TQSHEDLKAEPDELELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGE 105 (405)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~ 105 (405)
+.+|+..+++|.........++.+........+++++.++|+..++++++++|.||++||++|+.+.|.|.++++++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~ 84 (139)
T PRK10996 5 CTSCQAINRLPDERIEDAAKCGRCGHDLFDGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK 84 (139)
T ss_pred CCCCCCcCCCCCccccCCCcCCCCCCccCCCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34677778888888777788887665566677889999999999988999999999999999999999999999999888
Q ss_pred cEEEEEeCcccHhHHHhCCCcccceEEEEeCCeeeeeecCCCCHHHHHHHHHhhh
Q 015527 106 ADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160 (405)
Q Consensus 106 v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (405)
+.|+.||++++++++++|+|.++|++++|++|+.+.++.|..+.+.+.+|+.+.+
T Consensus 85 v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 85 VRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred eEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999998753
No 12
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.88 E-value=1.2e-21 Score=147.86 Aligned_cols=102 Identities=28% Similarity=0.566 Sum_probs=97.3
Q ss_pred cEEcChhhHHHHHcC-CCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeC
Q 015527 58 VVSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (405)
Q Consensus 58 ~~~l~~~~~~~~~~~-~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 136 (405)
|..+|+++|++.+.+ +++++|.||++||++|+.+.|.|.++++.+++++.|+.|||++++.+|++|+|.++||+++|++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence 467899999999976 8999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CeeeeeecCCCCHHHHHHHHHhh
Q 015527 137 GVRQFQFFGERTRDVISAWVREK 159 (405)
Q Consensus 137 g~~~~~~~g~~~~~~l~~~i~~~ 159 (405)
|+...++.|.++.+.|.+||+++
T Consensus 81 g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 81 GKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TEEEEEEESSSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHcC
Confidence 99999999999999999999874
No 13
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.88 E-value=4.7e-22 Score=150.10 Aligned_cols=100 Identities=31% Similarity=0.544 Sum_probs=92.4
Q ss_pred CcEEcChhhHHHHH-cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEe
Q 015527 57 DVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (405)
Q Consensus 57 ~~~~l~~~~~~~~~-~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (405)
.+++++.++|++.+ .++++++|.|||+||++|+.+.|.|+++++++++.+.|+.|||++++++|++++|.++||+++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 81 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP 81 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence 46789999999876 55679999999999999999999999999999888999999999999999999999999999999
Q ss_pred CC-eeeeeecCCCC-HHHHHHHH
Q 015527 136 AG-VRQFQFFGERT-RDVISAWV 156 (405)
Q Consensus 136 ~g-~~~~~~~g~~~-~~~l~~~i 156 (405)
+| +...+|.|..+ .++|.+||
T Consensus 82 ~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 82 GNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCCCceEccCCCCCHHHHHhhC
Confidence 77 88899999987 99998885
No 14
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.88 E-value=9.5e-22 Score=148.85 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=95.3
Q ss_pred ccCCCcEEcChhhHHHHHcC-CCcEEEEEecCCChh--Hh--hhHHHHHHHHHHc--cCCcEEEEEeCcccHhHHHhCCC
Q 015527 53 LYAKDVVSLNGKNFSEFMGK-NRNVMVMFYANWCYW--SK--KLAPEFAAAAKML--KGEADLVMVDAYLEKDLAKEYNI 125 (405)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~-~~~~~v~f~a~~C~~--C~--~~~~~~~~~~~~~--~~~v~~~~v~~~~~~~~~~~~~i 125 (405)
+....+..+|+++|++.+.+ ..++++.||++||++ |+ ...|.+.+++.++ ++++.|+.||++++++++++|+|
T Consensus 6 ~~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I 85 (120)
T cd03065 6 DGKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL 85 (120)
T ss_pred CCCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC
Confidence 44568899999999988855 458888899999976 99 7888899998888 66899999999999999999999
Q ss_pred cccceEEEEeCCeeeeeecCCCCHHHHHHHHHhhh
Q 015527 126 LAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160 (405)
Q Consensus 126 ~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (405)
+++||+++|++|+.+. |.|.++.+.|.+||.+++
T Consensus 86 ~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 86 DEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 9999999999997665 999999999999999765
No 15
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.88 E-value=6.4e-22 Score=150.25 Aligned_cols=100 Identities=35% Similarity=0.621 Sum_probs=92.1
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC------CcEEEEEeCcccHhHHHhCCCcccce
Q 015527 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG------EADLVMVDAYLEKDLAKEYNILAYPT 130 (405)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~------~v~~~~v~~~~~~~~~~~~~i~~~Pt 130 (405)
.++++++++|++.+.++++++|.|||+||++|+++.|.|+++++.+++ .+.++.|||++++++|++|+|.++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 578899999999998889999999999999999999999999987642 48999999999999999999999999
Q ss_pred EEEEeCCe-eeeeecCCCCHHHHHHHH
Q 015527 131 LYLFVAGV-RQFQFFGERTRDVISAWV 156 (405)
Q Consensus 131 ~~~~~~g~-~~~~~~g~~~~~~l~~~i 156 (405)
+++|++|+ ....|.|.++.+.|.+||
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999997 458899999999999885
No 16
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.1e-20 Score=175.79 Aligned_cols=277 Identities=21% Similarity=0.307 Sum_probs=198.7
Q ss_pred hHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeeeeeec
Q 015527 65 NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFF 144 (405)
Q Consensus 65 ~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~ 144 (405)
.+......+++++|.||++||++|+++.|+|.++++.+++.+.++.|||+.+.++|++|+|.++||+.+|..|.....|.
T Consensus 39 ~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~ 118 (383)
T KOG0191|consen 39 FFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYS 118 (383)
T ss_pred cHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeecc
Confidence 33445577889999999999999999999999999999989999999999999999999999999999999886788999
Q ss_pred CCCCHHHHHHHHHhhhcCCccccCC-------hhHHHH-HhccCCeEEEEEEcCCCCc---cHHHHHHHhc-c--CCcce
Q 015527 145 GERTRDVISAWVREKMTLGTYSITT-------TDEAER-ILTVESKLVLGFLHDLEGM---ESEELAAASK-L--HSDVN 210 (405)
Q Consensus 145 g~~~~~~l~~~i~~~~~~~~~~i~~-------~~~~~~-~l~~~~~~~v~f~~~~~~~---~~~~~~~~a~-~--~~~~~ 210 (405)
|..+.+.+.+|+...+.+.+..... ...+.. ....+..++|.||.+||.. ..+.|.+++. + ...+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~ 198 (383)
T KOG0191|consen 119 GPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVE 198 (383)
T ss_pred CcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceE
Confidence 9999999999999888655433322 123333 3345778999999999986 4566777773 3 35566
Q ss_pred EEEec---CHHHHhhcCCCCCCCCCeEEEeecCCCccccccCCCCHHHHHHHHhccCCCC-----cccccccc-cccccc
Q 015527 211 FYQTT---SADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPL-----VVTLTIHN-AQFVFQ 281 (405)
Q Consensus 211 f~~~~---~~~l~~~~~~~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~-----v~~l~~~~-~~~~~~ 281 (405)
++... ...++..+++.. +|++.+|+.++.....|.+.++.+.+..|+.....+. +.+..... +...+.
T Consensus 199 ~~~~d~~~~~~~~~~~~v~~---~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (383)
T KOG0191|consen 199 LGKIDATVHKSLASRLEVRG---YPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFL 275 (383)
T ss_pred EEeeccchHHHHhhhhcccC---CceEEEecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchh
Confidence 66554 668899999984 9999999987643567778899999999999866552 22222221 111111
Q ss_pred C-------Cc----cEEEEEecCCC-cHHHHHHHHHHHHH---hcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEE
Q 015527 282 D-------PR----KQLWLFAPAYG-SDKVILTFEEVAKA---LKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAY 346 (405)
Q Consensus 282 ~-------~~----~~~i~f~~~~~-~~~~~~~~~~va~~---~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i 346 (405)
. .. ..+-++..+.. +......+...|.. ....+.+..+++.... .++.....+. .|.+.+
T Consensus 276 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~~--~~~~~~ 350 (383)
T KOG0191|consen 276 DTAEFLDSLEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKIKAAKLDCALLK---SLCQKAIVRG--YPTIKL 350 (383)
T ss_pred hhhhhhhhhHHhhhhHhhhhcchhhcccccchhHHHHHhccccccccceeecccccccc---chhhHhhhhc--CceeEe
Confidence 1 00 12223444444 45566667777776 3346888888888654 3444444432 566666
Q ss_pred EeC
Q 015527 347 SAR 349 (405)
Q Consensus 347 ~~~ 349 (405)
.+.
T Consensus 351 ~~~ 353 (383)
T KOG0191|consen 351 YNY 353 (383)
T ss_pred ecc
Confidence 543
No 17
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.86 E-value=4.3e-21 Score=144.00 Aligned_cols=99 Identities=27% Similarity=0.503 Sum_probs=90.3
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcccHhHHHhCCCcccceEEEEe
Q 015527 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (405)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (405)
.++++++++|++.+. ++ ++|.|||+||++|+++.|.|+++++.+++ ++.++.|||++++.++++|+|.++||+++++
T Consensus 2 ~v~~l~~~~f~~~~~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02994 2 NVVELTDSNWTLVLE-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAK 79 (101)
T ss_pred ceEEcChhhHHHHhC-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence 578899999998874 33 78999999999999999999999998765 7999999999999999999999999999999
Q ss_pred CCeeeeeecCCCCHHHHHHHHHh
Q 015527 136 AGVRQFQFFGERTRDVISAWVRE 158 (405)
Q Consensus 136 ~g~~~~~~~g~~~~~~l~~~i~~ 158 (405)
+|+ ..+|.|.++.++|.+||++
T Consensus 80 ~g~-~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 80 DGV-FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CCC-EEEecCCCCHHHHHHHHhC
Confidence 995 5889999999999999864
No 18
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.9e-21 Score=162.65 Aligned_cols=108 Identities=24% Similarity=0.427 Sum_probs=101.3
Q ss_pred CCCcEEcChhhHHHHH---cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceE
Q 015527 55 AKDVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131 (405)
Q Consensus 55 ~~~~~~l~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~ 131 (405)
...+.++|..||...+ ....||+|+||+|||++|+++.|.+++++..+++.+.+++||||.++.++..|||+++||+
T Consensus 22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV 101 (304)
T COG3118 22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTV 101 (304)
T ss_pred cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeE
Confidence 3459999999999766 3345999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCeeeeeecCCCCHHHHHHHHHhhhcC
Q 015527 132 YLFVAGVRQFQFFGERTRDVISAWVREKMTL 162 (405)
Q Consensus 132 ~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 162 (405)
+.|.+|+.+..|.|....+.+.+|+.+.++.
T Consensus 102 ~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 102 YAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 9999999999999999999999999999976
No 19
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.86 E-value=2.1e-20 Score=157.52 Aligned_cols=106 Identities=34% Similarity=0.546 Sum_probs=97.4
Q ss_pred CCcEEcChhhHHHHHcC-----CCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccce
Q 015527 56 KDVVSLNGKNFSEFMGK-----NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT 130 (405)
Q Consensus 56 ~~~~~l~~~~~~~~~~~-----~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt 130 (405)
..++++++++|++.+.. +++++|+|||+||++|+.+.|.|+++++.+++.+.++.|||+++++++++|+|.++||
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT 109 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT 109 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence 57899999999998742 4799999999999999999999999999999889999999999999999999999999
Q ss_pred EEEEeCCeeeeeecCCCCHHHHHHHHHhhhc
Q 015527 131 LYLFVAGVRQFQFFGERTRDVISAWVREKMT 161 (405)
Q Consensus 131 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (405)
+++|++|+....+.|.++.++|.+|+.+...
T Consensus 110 l~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 110 LLLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred EEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 9999999777777788999999999988763
No 20
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.85 E-value=8.6e-21 Score=142.84 Aligned_cols=98 Identities=32% Similarity=0.619 Sum_probs=91.2
Q ss_pred cEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC---CcEEEEEeCcccHhHHHhCCCcccceEEEE
Q 015527 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (405)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 134 (405)
++.+++++|+..+.++ +++|.|||+||++|+.+.|.++++++++++ ++.++.|||++++.+|++|+|.++||+++|
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 5789999999999765 599999999999999999999999999976 799999999999999999999999999999
Q ss_pred eCCeeeeeecCCCCHHHHHHHH
Q 015527 135 VAGVRQFQFFGERTRDVISAWV 156 (405)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i 156 (405)
++|+.+.+|.|..+.+.|.+||
T Consensus 81 ~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 81 KDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eCCCeeeEeeCCCCHHHHHhhC
Confidence 9998888999999999998875
No 21
>PHA02278 thioredoxin-like protein
Probab=99.85 E-value=1.5e-20 Score=139.14 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=84.8
Q ss_pred hhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCccc----HhHHHhCCCcccceEEEEeCCe
Q 015527 63 GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE----KDLAKEYNILAYPTLYLFVAGV 138 (405)
Q Consensus 63 ~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~----~~~~~~~~i~~~Pt~~~~~~g~ 138 (405)
.++|.+.+.++++++|.|||+||+||+.+.|.++++++++..++.|+.||++.+ ++++++|+|.++||+++|++|+
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~ 83 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ 83 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE
Confidence 467888888899999999999999999999999999988665678999999976 6899999999999999999999
Q ss_pred eeeeecCCCCHHHHHHH
Q 015527 139 RQFQFFGERTRDVISAW 155 (405)
Q Consensus 139 ~~~~~~g~~~~~~l~~~ 155 (405)
.+.++.|..+.+.|.+|
T Consensus 84 ~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 84 LVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEeCCCCHHHHHhh
Confidence 99999999999888775
No 22
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.85 E-value=1.7e-20 Score=142.51 Aligned_cols=99 Identities=17% Similarity=0.338 Sum_probs=90.4
Q ss_pred EcChhhHHHHH---cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcccHhHHHhCCCcccceEEEEe
Q 015527 60 SLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (405)
Q Consensus 60 ~l~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (405)
.++.++|.+.+ ..+++++|.|||+||++|+.+.|.|+++++++++ ++.++.|||+.++.++++++|.++||+++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGII 87 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence 56778887544 3678999999999999999999999999999976 6999999999999999999999999999999
Q ss_pred CCeeeeeecCCCCHHHHHHHHHh
Q 015527 136 AGVRQFQFFGERTRDVISAWVRE 158 (405)
Q Consensus 136 ~g~~~~~~~g~~~~~~l~~~i~~ 158 (405)
+|+.+.++.|..+.+.|.+||++
T Consensus 88 ~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 88 NGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred CCEEEEEecCCCCHHHHHHHHhc
Confidence 99888889999999999999976
No 23
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.85 E-value=9.5e-21 Score=140.81 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=81.5
Q ss_pred hhhHHHHHc--CCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeee
Q 015527 63 GKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (405)
Q Consensus 63 ~~~~~~~~~--~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 140 (405)
.++|++.+. .+++++|.|||+||++|+.+.|.++++++++++.+.|+.||++++++++++|+|.++||+++|++|+.+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 467887774 578999999999999999999999999999987789999999999999999999999999999999999
Q ss_pred eeecCCCCHHHH
Q 015527 141 FQFFGERTRDVI 152 (405)
Q Consensus 141 ~~~~g~~~~~~l 152 (405)
.+..|..+...|
T Consensus 82 ~~~~G~~~~~~~ 93 (114)
T cd02954 82 KIDLGTGNNNKI 93 (114)
T ss_pred EEEcCCCCCceE
Confidence 999887665544
No 24
>PRK09381 trxA thioredoxin; Provisional
Probab=99.84 E-value=4.3e-20 Score=140.54 Aligned_cols=105 Identities=21% Similarity=0.406 Sum_probs=97.6
Q ss_pred CCcEEcChhhHHHH-HcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEE
Q 015527 56 KDVVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (405)
Q Consensus 56 ~~~~~l~~~~~~~~-~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 134 (405)
..++++++++|.+. +..+++++|+||++||++|+.+.|.++++++.+++++.++.+|++.++.++++|++.++||+++|
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence 56889999999965 46688999999999999999999999999999988899999999999999999999999999999
Q ss_pred eCCeeeeeecCCCCHHHHHHHHHhhh
Q 015527 135 VAGVRQFQFFGERTRDVISAWVREKM 160 (405)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (405)
++|+...++.|..+.+.|..+|...+
T Consensus 83 ~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 83 KNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred eCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99988899999999999999998765
No 25
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.84 E-value=1.7e-20 Score=143.06 Aligned_cols=100 Identities=36% Similarity=0.576 Sum_probs=91.3
Q ss_pred cEEcChhhHHHHH-cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcc--cHhHHHhCCCcccceEEEE
Q 015527 58 VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL--EKDLAKEYNILAYPTLYLF 134 (405)
Q Consensus 58 ~~~l~~~~~~~~~-~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~ 134 (405)
++++++++|++.+ ..+++++|.|||+||++|+++.|.|+++++.+++.+.++.|||+. ++++|++|+|.++||+++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 6789999999887 456789999999999999999999999999998889999999999 8899999999999999999
Q ss_pred eCCe-----eeeeecCCCCHHHHHHHHH
Q 015527 135 VAGV-----RQFQFFGERTRDVISAWVR 157 (405)
Q Consensus 135 ~~g~-----~~~~~~g~~~~~~l~~~i~ 157 (405)
++|+ ....|.|.++.+.|.+||.
T Consensus 82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 82 RPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred eCCCcccccccccccCccCHHHHHHHhC
Confidence 9774 4678999999999999973
No 26
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.84 E-value=3.5e-19 Score=152.13 Aligned_cols=182 Identities=12% Similarity=0.173 Sum_probs=137.7
Q ss_pred CCcEEEEEec---CCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeee-eeecCCC
Q 015527 73 NRNVMVMFYA---NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ-FQFFGER 147 (405)
Q Consensus 73 ~~~~~v~f~a---~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~-~~~~g~~ 147 (405)
+...++.|++ +||++|+.+.|.++++++.+.+ .+.++.+|.+++++++++|+|.++||+++|++|+.. .++.|..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 4456777888 9999999999999999999864 466777777799999999999999999999999776 5899999
Q ss_pred CHHHHHHHHHhhhc--CCccccCChhHHHHHhccC-CeEEEEEEcCCCCccHHH---HHHHhccCCcceEEEe---cCHH
Q 015527 148 TRDVISAWVREKMT--LGTYSITTTDEAERILTVE-SKLVLGFLHDLEGMESEE---LAAASKLHSDVNFYQT---TSAD 218 (405)
Q Consensus 148 ~~~~l~~~i~~~~~--~~~~~i~~~~~~~~~l~~~-~~~~v~f~~~~~~~~~~~---~~~~a~~~~~~~f~~~---~~~~ 218 (405)
+.+++.+||+..+. .....+ +.+..+.+.+.+ ...++.|+++||.++... +..++...+++.+..+ .+.+
T Consensus 99 ~~~~l~~~i~~~~~~~~~~~~L-~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~ 177 (215)
T TIGR02187 99 AGYEFAALIEDIVRVSQGEPGL-SEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPD 177 (215)
T ss_pred CHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHH
Confidence 99999999988853 222233 333344444434 445555899999986543 3444433456666543 6678
Q ss_pred HHhhcCCCCCCCCCeEEEeecCCCccccccCCCCHHHHHHHHhc
Q 015527 219 VAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (405)
Q Consensus 219 l~~~~~~~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~ 262 (405)
+++++++.. .|++++++.+ . .+.|....+++.+|+..
T Consensus 178 ~~~~~~V~~---vPtl~i~~~~--~--~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 178 LAEKYGVMS---VPKIVINKGV--E--EFVGAYPEEQFLEYILS 214 (215)
T ss_pred HHHHhCCcc---CCEEEEecCC--E--EEECCCCHHHHHHHHHh
Confidence 999999984 8999998653 2 27788888999999864
No 27
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.83 E-value=5.1e-20 Score=136.81 Aligned_cols=93 Identities=27% Similarity=0.409 Sum_probs=85.4
Q ss_pred hHHHHH-cC-CCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeeeee
Q 015527 65 NFSEFM-GK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQ 142 (405)
Q Consensus 65 ~~~~~~-~~-~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~ 142 (405)
+|++.+ .. +++++|.||++||++|+.+.|.++++++.+++.+.++.||++.++.++++|+|.++|++++|++|+...+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 566666 33 6799999999999999999999999999998889999999999999999999999999999999988889
Q ss_pred ecCCCCHHHHHHHHH
Q 015527 143 FFGERTRDVISAWVR 157 (405)
Q Consensus 143 ~~g~~~~~~l~~~i~ 157 (405)
+.|..+.+.|..||.
T Consensus 82 ~~g~~~~~~l~~~l~ 96 (96)
T cd02956 82 FQGAQPEEQLRQMLD 96 (96)
T ss_pred ecCCCCHHHHHHHhC
Confidence 999999999999873
No 28
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.83 E-value=3.6e-20 Score=137.57 Aligned_cols=84 Identities=26% Similarity=0.626 Sum_probs=79.0
Q ss_pred cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCc-ccHhHHHhCCCcccceEEEEeCCeeeeeecCCCCH
Q 015527 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR 149 (405)
Q Consensus 71 ~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~-~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (405)
.++++++|.|||+||++|+.++|.|+++++.++ ++.++.||++ +++.++++|+|.++||+++|++| ...+|.|.++.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~ 93 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTL 93 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCH
Confidence 478999999999999999999999999999997 5889999998 88999999999999999999999 88999999999
Q ss_pred HHHHHHH
Q 015527 150 DVISAWV 156 (405)
Q Consensus 150 ~~l~~~i 156 (405)
+.|.+||
T Consensus 94 ~~l~~f~ 100 (100)
T cd02999 94 DSLAAFY 100 (100)
T ss_pred HHHHhhC
Confidence 9999885
No 29
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.83 E-value=6e-20 Score=138.75 Aligned_cols=99 Identities=40% Similarity=0.694 Sum_probs=92.4
Q ss_pred cEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHcc--CCcEEEEEeCcc--cHhHHHhCCCcccceEEE
Q 015527 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYL--EKDLAKEYNILAYPTLYL 133 (405)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~--~~v~~~~v~~~~--~~~~~~~~~i~~~Pt~~~ 133 (405)
++.+++.+|+..+.++++++|+||++||++|+++.|.++++++.++ +.+.++.+||+. ++.++++++|+++||+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 5788999999999888999999999999999999999999999987 468999999999 899999999999999999
Q ss_pred EeCCeeeeeecCCCCHHHHHHHH
Q 015527 134 FVAGVRQFQFFGERTRDVISAWV 156 (405)
Q Consensus 134 ~~~g~~~~~~~g~~~~~~l~~~i 156 (405)
|++|+.+.++.|..+.+.+.+||
T Consensus 82 ~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 82 FENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EeCCCeeEEeCCCCCHHHHHhhC
Confidence 99998889999999999998885
No 30
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.83 E-value=2.5e-19 Score=141.84 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=82.9
Q ss_pred CCcEEcChhhHHHHHc--CCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcccHhHHHhCCCcc-----
Q 015527 56 KDVVSLNGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILA----- 127 (405)
Q Consensus 56 ~~~~~l~~~~~~~~~~--~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~----- 127 (405)
..+.++++++|++.+. .+++++|+|||+||++|+.+.|.++++++++++ ++.|+.||++++++++++|+|.+
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 5788999999998873 346899999999999999999999999999975 69999999999999999999988
Q ss_pred -cceEEEEeCCeeeeeecC
Q 015527 128 -YPTLYLFVAGVRQFQFFG 145 (405)
Q Consensus 128 -~Pt~~~~~~g~~~~~~~g 145 (405)
+||+++|++|+.+.++.|
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 108 QLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCCEEEEEECCEEEEEEec
Confidence 999999999999999887
No 31
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.83 E-value=4.4e-20 Score=137.74 Aligned_cols=99 Identities=23% Similarity=0.356 Sum_probs=88.0
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEec--CCCh---hHhhhHHHHHHHHHHccCCcEEEEEeC-----cccHhHHHhCCCc
Q 015527 57 DVVSLNGKNFSEFMGKNRNVMVMFYA--NWCY---WSKKLAPEFAAAAKMLKGEADLVMVDA-----YLEKDLAKEYNIL 126 (405)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a--~~C~---~C~~~~~~~~~~~~~~~~~v~~~~v~~-----~~~~~~~~~~~i~ 126 (405)
.++.|+.++|++.+.+++.+||.||| |||+ +|++++|++.+.+.. |.++.||| .++.++|++|+|+
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~----v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD----LLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc----eEEEEEecccccchhhHHHHHHhCCC
Confidence 57899999999999999999999999 9998 888888877776553 88999999 5678999999999
Q ss_pred --ccceEEEEeCCe--eeeeecCC-CCHHHHHHHHHhh
Q 015527 127 --AYPTLYLFVAGV--RQFQFFGE-RTRDVISAWVREK 159 (405)
Q Consensus 127 --~~Pt~~~~~~g~--~~~~~~g~-~~~~~l~~~i~~~ 159 (405)
++||+.+|++|. ....|.|. ++.+.|.+||+++
T Consensus 78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 78 KESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred cCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999999884 56789997 9999999999875
No 32
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.83 E-value=1.3e-19 Score=135.78 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=82.6
Q ss_pred ChhhHHHHHc--CCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccH---hHHHhCCCcccceEEEEeC
Q 015527 62 NGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK---DLAKEYNILAYPTLYLFVA 136 (405)
Q Consensus 62 ~~~~~~~~~~--~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~---~~~~~~~i~~~Pt~~~~~~ 136 (405)
+.++|++.+. .+++++|.|||+||++|+.++|.++++++.+ +++.|+.||+++++ +++++|+|.++||+++|++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 4567888774 3789999999999999999999999999999 57999999999874 8999999999999999999
Q ss_pred CeeeeeecCCCCHHHHHHHHHh
Q 015527 137 GVRQFQFFGERTRDVISAWVRE 158 (405)
Q Consensus 137 g~~~~~~~g~~~~~~l~~~i~~ 158 (405)
|+.+.++.|. ....+.+.+.+
T Consensus 81 G~~v~~~~G~-~~~~l~~~~~~ 101 (103)
T cd02985 81 GEKIHEEEGI-GPDELIGDVLY 101 (103)
T ss_pred CeEEEEEeCC-CHHHHHHHHHh
Confidence 9999999995 56666665543
No 33
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.83 E-value=1.2e-19 Score=136.86 Aligned_cols=99 Identities=37% Similarity=0.577 Sum_probs=91.2
Q ss_pred cEEcChhhHHHHHc-CCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeC
Q 015527 58 VVSLNGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (405)
Q Consensus 58 ~~~l~~~~~~~~~~-~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 136 (405)
+.++++++|++.+. .+++++|.||++||++|+++.|.|.++++++.+.+.++.+||+++++++++|+|+++|++++|++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~ 81 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA 81 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence 67899999998874 45569999999999999999999999999998889999999999999999999999999999998
Q ss_pred C-eeeeeecCCCCHHHHHHHH
Q 015527 137 G-VRQFQFFGERTRDVISAWV 156 (405)
Q Consensus 137 g-~~~~~~~g~~~~~~l~~~i 156 (405)
| .....|.|.++.+.|.+|+
T Consensus 82 ~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 82 GKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCcceeecCCCCCHHHHHHHh
Confidence 7 5678899999999999997
No 34
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.82 E-value=1.8e-19 Score=134.84 Aligned_cols=96 Identities=19% Similarity=0.272 Sum_probs=87.6
Q ss_pred cChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcccHhHHHhCCCcccceEEEEeCCee
Q 015527 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (405)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 139 (405)
-+.++|+..+.++++++|+|||+||++|+.+.|.+.++++.+++ .+.|+.+|++ +++++++|+|+++||+++|++|+.
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEE
Confidence 46788999998899999999999999999999999999999985 5889999999 788999999999999999999988
Q ss_pred eeeecCCCCHHHHHHHHHh
Q 015527 140 QFQFFGERTRDVISAWVRE 158 (405)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~ 158 (405)
+.+..|. +.+.+.++|.+
T Consensus 84 ~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 84 VAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred EEEEecC-ChHHHHHHHhh
Confidence 8888885 88889888865
No 35
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.82 E-value=1e-19 Score=137.00 Aligned_cols=99 Identities=40% Similarity=0.702 Sum_probs=92.3
Q ss_pred cChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC--CcEEEEEeCcccHhHHHhCCCcccceEEEEeCCe
Q 015527 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (405)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 138 (405)
|++++|++.+.++++++|+||++||++|+.+.|.|+++++.+++ ++.++.+||++++.++++|+|.++|++++|++|+
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 57889999988899999999999999999999999999999987 6999999999999999999999999999999775
Q ss_pred eeeeecCCCCHHHHHHHHHhh
Q 015527 139 RQFQFFGERTRDVISAWVREK 159 (405)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~~ 159 (405)
...+|.|..+.+.|..||.+.
T Consensus 81 ~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 81 KPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred cceeecCCCCHHHHHHHHHhc
Confidence 588999999999999999875
No 36
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.82 E-value=2.1e-19 Score=132.51 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=92.1
Q ss_pred CCcEEcChhhHHHHHcCCCcEEEEEecCC--ChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEE
Q 015527 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANW--CYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYL 133 (405)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~~--C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 133 (405)
.....++..+|++.+..+.+++|.||++| |++|+.+.|.+.++++++++.+.|+.||+++++.++.+|+|.++||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~ 89 (111)
T cd02965 10 HGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLF 89 (111)
T ss_pred cCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEE
Confidence 34567899999999988899999999997 9999999999999999999889999999999999999999999999999
Q ss_pred EeCCeeeeeecCCCCHHHHHH
Q 015527 134 FVAGVRQFQFFGERTRDVISA 154 (405)
Q Consensus 134 ~~~g~~~~~~~g~~~~~~l~~ 154 (405)
|++|+.+.++.|..+.+++.+
T Consensus 90 fkdGk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 90 FRDGRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred EECCEEEEEEeCccCHHHHhh
Confidence 999999999999999888753
No 37
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.81 E-value=2e-19 Score=136.47 Aligned_cols=100 Identities=23% Similarity=0.517 Sum_probs=88.7
Q ss_pred CcEEcChhhHHHHH---cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc-cHhHHHh-CCCcccce
Q 015527 57 DVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-EKDLAKE-YNILAYPT 130 (405)
Q Consensus 57 ~~~~l~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~-~~~~~~~-~~i~~~Pt 130 (405)
.+++++.++|+..+ +++++++|.||++||++|+++.|.|.++++.+++ ++.++.|||+. +..+|++ ++|.++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 47889999999887 3578999999999999999999999999999987 59999999998 5788874 99999999
Q ss_pred EEEEeCC-eeeeeecCC-CCHHHHHHHH
Q 015527 131 LYLFVAG-VRQFQFFGE-RTRDVISAWV 156 (405)
Q Consensus 131 ~~~~~~g-~~~~~~~g~-~~~~~l~~~i 156 (405)
+++|++| .....|.|. ++.+.|..||
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999854 578899995 8999998885
No 38
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.80 E-value=5.5e-19 Score=133.50 Aligned_cols=98 Identities=34% Similarity=0.626 Sum_probs=88.8
Q ss_pred cEEcChhhHHHHHc-CCCcEEEEEecCCChhHhhhHHHHHHHHHHccC--CcEEEEEeCcccHhHHHhCCCcccceEEEE
Q 015527 58 VVSLNGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (405)
Q Consensus 58 ~~~l~~~~~~~~~~-~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 134 (405)
+.+|++++|++.+. .+++++|+||++||++|+.+.|.|.++++.+++ ++.++.+||+.+ +++..+++.++|++++|
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF 80 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence 67899999998874 458999999999999999999999999999876 699999999987 68889999999999999
Q ss_pred eCCe--eeeeecCCCCHHHHHHHH
Q 015527 135 VAGV--RQFQFFGERTRDVISAWV 156 (405)
Q Consensus 135 ~~g~--~~~~~~g~~~~~~l~~~i 156 (405)
.+|+ ...+|.|..+.+.|.+||
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHHHHHhhC
Confidence 9875 578899999999999885
No 39
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.78 E-value=1.2e-18 Score=131.81 Aligned_cols=99 Identities=36% Similarity=0.672 Sum_probs=89.6
Q ss_pred cEEcChhhHHHHHcC-CCcEEEEEecCCChhHhhhHHHHHHHHHHcc--CCcEEEEEeCcc-cHhHHHhCCCcccceEEE
Q 015527 58 VVSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYL-EKDLAKEYNILAYPTLYL 133 (405)
Q Consensus 58 ~~~l~~~~~~~~~~~-~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~--~~v~~~~v~~~~-~~~~~~~~~i~~~Pt~~~ 133 (405)
+.++++++|+..+.+ +++++|.||++||++|+++.|.|.++++.++ +++.++.+||+. ++++|++|+|.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 568899999988854 4599999999999999999999999999987 379999999999 999999999999999999
Q ss_pred EeCC-eeeeeecCCCCHHHHHHHH
Q 015527 134 FVAG-VRQFQFFGERTRDVISAWV 156 (405)
Q Consensus 134 ~~~g-~~~~~~~g~~~~~~l~~~i 156 (405)
|++| +....|.|.++.+.|.+||
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 9955 6778899999999999885
No 40
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.78 E-value=1.9e-18 Score=130.09 Aligned_cols=94 Identities=29% Similarity=0.506 Sum_probs=84.2
Q ss_pred hhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC---CcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeee
Q 015527 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (405)
Q Consensus 64 ~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 140 (405)
++|++. .++++++|.|||+||++|+.+.|.|+++++.+++ .+.++.+||+..+.++++|+|.++||+++|++| ..
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~~ 84 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-LA 84 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-Cc
Confidence 567764 4577999999999999999999999999999854 599999999999999999999999999999877 56
Q ss_pred eeecCCCCHHHHHHHHHhh
Q 015527 141 FQFFGERTRDVISAWVREK 159 (405)
Q Consensus 141 ~~~~g~~~~~~l~~~i~~~ 159 (405)
.++.|..+.+.|.+|+++.
T Consensus 85 ~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 85 YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred eeecCCCCHHHHHHHHHhh
Confidence 7899999999999999864
No 41
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.78 E-value=3.4e-18 Score=128.44 Aligned_cols=100 Identities=28% Similarity=0.495 Sum_probs=91.0
Q ss_pred cChhhHHHHHcC-CCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCee
Q 015527 61 LNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (405)
Q Consensus 61 l~~~~~~~~~~~-~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 139 (405)
++.++|.+.+.+ +++++|.||++||++|+.+.|.+.++++.+++++.|+.||++.++.++++|+|.++|+++++++|+.
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE
Confidence 356788877755 5599999999999999999999999999998789999999999999999999999999999999988
Q ss_pred eeeecCCCCHHHHHHHHHhhh
Q 015527 140 QFQFFGERTRDVISAWVREKM 160 (405)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~~ 160 (405)
...+.|..+.+.+.+||++.+
T Consensus 81 ~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 81 VDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred eeeecCCCCHHHHHHHHHhhC
Confidence 889999999999999998753
No 42
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.77 E-value=2e-18 Score=129.64 Aligned_cols=97 Identities=36% Similarity=0.680 Sum_probs=90.2
Q ss_pred EcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHc--cCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCC
Q 015527 60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKML--KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG 137 (405)
Q Consensus 60 ~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~--~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g 137 (405)
+++.++|.+.+.++++++|.||++||++|+.+.|.|.++++.+ .+.+.|+.|||++++.++++|+|.++|++++|++|
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 5788999999988889999999999999999999999999999 45899999999999999999999999999999966
Q ss_pred -eeeeeecCCCCHHHHHHHH
Q 015527 138 -VRQFQFFGERTRDVISAWV 156 (405)
Q Consensus 138 -~~~~~~~g~~~~~~l~~~i 156 (405)
....+|.|..+.+.+.+|+
T Consensus 82 ~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 82 SKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CcccccCCCCcCHHHHHhhC
Confidence 7889999999999998874
No 43
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.77 E-value=8.2e-18 Score=130.16 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=84.9
Q ss_pred ChhhHHHHH--cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEE-EEeCCe
Q 015527 62 NGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY-LFVAGV 138 (405)
Q Consensus 62 ~~~~~~~~~--~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~-~~~~g~ 138 (405)
+..++++.+ .++++++|.|||+||+||+.+.|.++++++++++.+.|+.||+|+++++++.|+|++.|+++ +|++|+
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 467888877 45789999999999999999999999999999877999999999999999999999777666 888997
Q ss_pred -eeeeecC--------CCCHHHHHHHHHhhh
Q 015527 139 -RQFQFFG--------ERTRDVISAWVREKM 160 (405)
Q Consensus 139 -~~~~~~g--------~~~~~~l~~~i~~~~ 160 (405)
.+.+..| ..+.++|.+-++...
T Consensus 90 ~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 90 IMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred EEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 7788888 466677766666554
No 44
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.77 E-value=1.1e-17 Score=127.13 Aligned_cols=90 Identities=23% Similarity=0.284 Sum_probs=82.2
Q ss_pred CCcEEcCh-hhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEE
Q 015527 56 KDVVSLNG-KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (405)
Q Consensus 56 ~~~~~l~~-~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 134 (405)
..+..++. ++|.+.+.++++++|.||++||++|+.+.|.++++++++. ++.|+.||++++++++++|+|.++||+++|
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence 45666766 8999999888999999999999999999999999999987 599999999999999999999999999999
Q ss_pred eCCeeeeeecCC
Q 015527 135 VAGVRQFQFFGE 146 (405)
Q Consensus 135 ~~g~~~~~~~g~ 146 (405)
++|+.+.++.|.
T Consensus 83 k~G~~v~~~~g~ 94 (113)
T cd02989 83 KNGKTVDRIVGF 94 (113)
T ss_pred ECCEEEEEEECc
Confidence 999888877663
No 45
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.77 E-value=6.1e-18 Score=133.92 Aligned_cols=99 Identities=17% Similarity=0.336 Sum_probs=88.0
Q ss_pred hhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCccc--HhHHHhCCCcccceEEEEe-CCee
Q 015527 63 GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE--KDLAKEYNILAYPTLYLFV-AGVR 139 (405)
Q Consensus 63 ~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~--~~~~~~~~i~~~Pt~~~~~-~g~~ 139 (405)
...++..+..+++++|+|||+||++|+.+.|.+.++++.+.+.+.|+.||++.. ..++++|+|.++||+++|+ +|+.
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 345677778899999999999999999999999999999987777887777654 5889999999999999996 8989
Q ss_pred eeeecCCCCHHHHHHHHHhhhc
Q 015527 140 QFQFFGERTRDVISAWVREKMT 161 (405)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~~~ 161 (405)
+.++.|....++|.++|.+.+.
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc
Confidence 9999999999999999998874
No 46
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.76 E-value=7.7e-18 Score=128.55 Aligned_cols=89 Identities=25% Similarity=0.266 Sum_probs=81.4
Q ss_pred CCcEEcChhhHHHHHcCC---CcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEE
Q 015527 56 KDVVSLNGKNFSEFMGKN---RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132 (405)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~---~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~ 132 (405)
..+.+++.++|.+.+.+. ++++|.||++||++|+.+.|.++++++++. ++.|+.||++++ .++++|+|.++||++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 457789999999888544 899999999999999999999999999987 589999999999 999999999999999
Q ss_pred EEeCCeeeeeecCC
Q 015527 133 LFVAGVRQFQFFGE 146 (405)
Q Consensus 133 ~~~~g~~~~~~~g~ 146 (405)
+|++|+.+.++.|.
T Consensus 82 ~f~~G~~v~~~~G~ 95 (113)
T cd02957 82 VYKNGELIDNIVGF 95 (113)
T ss_pred EEECCEEEEEEecH
Confidence 99999999999884
No 47
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.76 E-value=3e-18 Score=129.15 Aligned_cols=94 Identities=19% Similarity=0.269 Sum_probs=84.9
Q ss_pred hhHHHHHcCCCcEEEEEecCCChhHhhhHHHH---HHHHHHccCCcEEEEEeCcc----cHhHHHhCCCcccceEEEEe-
Q 015527 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYLFV- 135 (405)
Q Consensus 64 ~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~---~~~~~~~~~~v~~~~v~~~~----~~~~~~~~~i~~~Pt~~~~~- 135 (405)
+.|.+.+.++++++|.||++||++|+.+.|.+ .++++.+++++.++.||+++ .+.++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 46788888999999999999999999999988 67888887789999999987 57899999999999999998
Q ss_pred -CCeeeeeecCCCCHHHHHHHHH
Q 015527 136 -AGVRQFQFFGERTRDVISAWVR 157 (405)
Q Consensus 136 -~g~~~~~~~g~~~~~~l~~~i~ 157 (405)
+|+.+.++.|..+.+++.++|.
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCcccccccCHHHHHHHhC
Confidence 7888899999999999988873
No 48
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=8.3e-18 Score=124.38 Aligned_cols=86 Identities=27% Similarity=0.454 Sum_probs=77.4
Q ss_pred cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeeeeeecCCCCHH
Q 015527 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRD 150 (405)
Q Consensus 71 ~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~ 150 (405)
.++++++|.|||+||+||+.+.|.+.+++.+|++ +.|+.||+++..+++++++|.+.||+.++++|+.+.++.|... .
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~-~ 96 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANK-A 96 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCH-H
Confidence 3468999999999999999999999999999997 9999999999999999999999999999999999999999743 3
Q ss_pred HHHHHHHh
Q 015527 151 VISAWVRE 158 (405)
Q Consensus 151 ~l~~~i~~ 158 (405)
.+.+.+.+
T Consensus 97 ~l~~~i~~ 104 (106)
T KOG0907|consen 97 ELEKKIAK 104 (106)
T ss_pred HHHHHHHh
Confidence 66665543
No 49
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.74 E-value=2.5e-17 Score=122.61 Aligned_cols=93 Identities=19% Similarity=0.321 Sum_probs=82.4
Q ss_pred hhhHHHHHcCC--CcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeee
Q 015527 63 GKNFSEFMGKN--RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (405)
Q Consensus 63 ~~~~~~~~~~~--~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 140 (405)
.++|++.+... ++++|.||++||++|+.+.|.++++++++..++.++.+|+++.++++++|++.++||+++|++|+..
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 46788888555 9999999999999999999999999999766899999999999999999999999999999999888
Q ss_pred eeecCCCCHHHHHHHH
Q 015527 141 FQFFGERTRDVISAWV 156 (405)
Q Consensus 141 ~~~~g~~~~~~l~~~i 156 (405)
.++.|. +.+.|.+.|
T Consensus 82 ~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 82 DRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEeCC-CHHHHHHhh
Confidence 888885 566666654
No 50
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.74 E-value=3.1e-17 Score=121.72 Aligned_cols=87 Identities=16% Similarity=0.311 Sum_probs=82.3
Q ss_pred cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeeeeeecCCCCHH
Q 015527 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRD 150 (405)
Q Consensus 71 ~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~ 150 (405)
..++++++.||++||++|+.+.|.++++++.+++++.++.+|++++++++++++|.++|+++++++|+.+.++.|..+.+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~ 90 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKS 90 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccHH
Confidence 57889999999999999999999999999999878999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 015527 151 VISAWVR 157 (405)
Q Consensus 151 ~l~~~i~ 157 (405)
++.+|++
T Consensus 91 ~~~~~l~ 97 (97)
T cd02949 91 EYREFIE 97 (97)
T ss_pred HHHHhhC
Confidence 9988873
No 51
>PTZ00051 thioredoxin; Provisional
Probab=99.73 E-value=6.1e-17 Score=120.69 Aligned_cols=90 Identities=27% Similarity=0.452 Sum_probs=81.4
Q ss_pred ChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeeee
Q 015527 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQF 141 (405)
Q Consensus 62 ~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 141 (405)
+.++++..+..+++++|+||++||++|+.+.|.++++++.+. ++.|+.||+++++.++++|+|.++||++++++|+...
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 85 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVVD 85 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEEE
Confidence 457788888889999999999999999999999999999876 5999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHH
Q 015527 142 QFFGERTRDVIS 153 (405)
Q Consensus 142 ~~~g~~~~~~l~ 153 (405)
++.|. ..++|.
T Consensus 86 ~~~G~-~~~~~~ 96 (98)
T PTZ00051 86 TLLGA-NDEALK 96 (98)
T ss_pred EEeCC-CHHHhh
Confidence 99996 555553
No 52
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.72 E-value=8e-17 Score=149.28 Aligned_cols=109 Identities=20% Similarity=0.437 Sum_probs=94.6
Q ss_pred CCCccCCCcEEcChhhHHHHHc---CCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcccH-hHH-HhC
Q 015527 50 WPLLYAKDVVSLNGKNFSEFMG---KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEK-DLA-KEY 123 (405)
Q Consensus 50 ~~~~~~~~~~~l~~~~~~~~~~---~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~~~-~~~-~~~ 123 (405)
.....+..++.|+.++|+..+. .+++++|.|||+||++|+.+.|.|+++++++++ ++.|+.|||+.+. .++ ++|
T Consensus 345 ~dl~~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~ 424 (463)
T TIGR00424 345 ADIFDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQEL 424 (463)
T ss_pred ccccCCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHc
Confidence 3445677899999999999875 788999999999999999999999999999987 5999999999764 454 789
Q ss_pred CCcccceEEEEeCCe-eeeeec-CCCCHHHHHHHHHh
Q 015527 124 NILAYPTLYLFVAGV-RQFQFF-GERTRDVISAWVRE 158 (405)
Q Consensus 124 ~i~~~Pt~~~~~~g~-~~~~~~-g~~~~~~l~~~i~~ 158 (405)
+|.++||+++|++|. ....|. |.++.+.|..||+.
T Consensus 425 ~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 425 QLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred CCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999999999999774 457797 58999999999975
No 53
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.71 E-value=1.2e-16 Score=121.84 Aligned_cols=96 Identities=24% Similarity=0.448 Sum_probs=79.0
Q ss_pred CcEEcChhhHHHHHcC-CCcEEEEEecCCChhHhhhHHHHHHHHHHccC---CcEEEEEeCcc--cHhHHHhCCCcccce
Q 015527 57 DVVSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYL--EKDLAKEYNILAYPT 130 (405)
Q Consensus 57 ~~~~l~~~~~~~~~~~-~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~---~v~~~~v~~~~--~~~~~~~~~i~~~Pt 130 (405)
.++++++++|++.+.+ +++++|.||++||++|+.+.|.|+++++.+++ .+.|+.+||+. ++++|++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 5789999999988854 46999999999999999999999999998864 59999999864 678999999999999
Q ss_pred EEEEeCCeee----eeecCC-CCHHHH
Q 015527 131 LYLFVAGVRQ----FQFFGE-RTRDVI 152 (405)
Q Consensus 131 ~~~~~~g~~~----~~~~g~-~~~~~l 152 (405)
+++|++|... ..|.|. +..+.+
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHH
Confidence 9999977421 345555 444444
No 54
>PLN02309 5'-adenylylsulfate reductase
Probab=99.71 E-value=1.3e-16 Score=147.98 Aligned_cols=108 Identities=22% Similarity=0.489 Sum_probs=95.6
Q ss_pred CccCCCcEEcChhhHHHHH---cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCc-ccHhHHH-hCCC
Q 015527 52 LLYAKDVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY-LEKDLAK-EYNI 125 (405)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~-~~~~~~~-~~~i 125 (405)
...+..+++++.++|++.+ ..+++++|+|||+||++|+.+.|.|.++++.+++ ++.|+.|||+ .+.++|+ +|+|
T Consensus 341 l~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I 420 (457)
T PLN02309 341 IFNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL 420 (457)
T ss_pred ccCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC
Confidence 4466789999999999877 4788999999999999999999999999999976 6999999999 8888996 6999
Q ss_pred cccceEEEEeCCe-eeeeecC-CCCHHHHHHHHHhh
Q 015527 126 LAYPTLYLFVAGV-RQFQFFG-ERTRDVISAWVREK 159 (405)
Q Consensus 126 ~~~Pt~~~~~~g~-~~~~~~g-~~~~~~l~~~i~~~ 159 (405)
.++||+++|.+|. ....|.| .++.+.|..||+..
T Consensus 421 ~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 421 GSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999999999663 5678875 69999999999864
No 55
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.70 E-value=2.1e-16 Score=116.31 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=69.6
Q ss_pred hhHHHHHc--CCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeee
Q 015527 64 KNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (405)
Q Consensus 64 ~~~~~~~~--~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 140 (405)
+++++.+. ++++++|.|+|+||++|+.+.|.+.++++++++.+.|+.||.++.+++++.|+|.+.||+++|++|+..
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 45666663 589999999999999999999999999999985599999999999999999999999999999999543
No 56
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=4.7e-16 Score=142.35 Aligned_cols=226 Identities=15% Similarity=0.178 Sum_probs=143.4
Q ss_pred ccCCCcEEcChhhHHHHHcCC-CcEEEEEecCCChhHhhhHHHHHHHHHHccC---CcEEEEEeCcc--cHhHHHhCCCc
Q 015527 53 LYAKDVVSLNGKNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYL--EKDLAKEYNIL 126 (405)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~-~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~---~v~~~~v~~~~--~~~~~~~~~i~ 126 (405)
+++++++.|+.++|+..+.+. +..+|.||++||++|+.++|.|.++++.+.+ -+.++.|||.+ |..+|++|+|.
T Consensus 36 ~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~ 115 (606)
T KOG1731|consen 36 SPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVS 115 (606)
T ss_pred CCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCC
Confidence 344789999999999988554 4899999999999999999999999998877 68999999964 57899999999
Q ss_pred ccceEEEEeCC----eeeeeecCCCCHHHHHHHHHhhhc-----------C---CccccCChhHHHHHhccCCeEEEEEE
Q 015527 127 AYPTLYLFVAG----VRQFQFFGERTRDVISAWVREKMT-----------L---GTYSITTTDEAERILTVESKLVLGFL 188 (405)
Q Consensus 127 ~~Pt~~~~~~g----~~~~~~~g~~~~~~l~~~i~~~~~-----------~---~~~~i~~~~~~~~~l~~~~~~~v~f~ 188 (405)
++|++.+|..+ ..-..+.|.....++...+.+.+. | ++..-++.+++.+..++....+-..+
T Consensus 116 ~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~ 195 (606)
T KOG1731|consen 116 GYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVF 195 (606)
T ss_pred CCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEE
Confidence 99999999733 222455666667777777766552 2 33444455555555544332333333
Q ss_pred cCCCCc-cHHHHHHHhccCCcceEEEecCHHHHhh--cCCCCCCCCCeEEEeecCCCccccccCC---CCHHHHHHHHhc
Q 015527 189 HDLEGM-ESEELAAASKLHSDVNFYQTTSADVAEF--FHIHPKSKRPALIFLHLEAGKATPFRHQ---FTRLAIANFVTH 262 (405)
Q Consensus 189 ~~~~~~-~~~~~~~~a~~~~~~~f~~~~~~~l~~~--~~~~~~~~~p~i~~~~~~~~~~~~y~g~---~~~~~l~~fi~~ 262 (405)
.+.... ....+.... ..+.+....+-+.+.... ++.. ..|..+++|+++.+++.-.+. .-.+.|.++|.+
T Consensus 196 e~~~s~lg~~~~l~~l-~~~~v~vr~~~d~q~~~~~~l~~~---~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~ 271 (606)
T KOG1731|consen 196 ETEPSDLGWANLLNDL-PSKQVGVRARLDTQNFPLFGLKPD---NFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGD 271 (606)
T ss_pred ecCCcccHHHHHHhhc-cCCCcceEEEecchhccccccCCC---CchhhhhhcCCcccccccccccHHHHHHHHHHHhcC
Confidence 332222 222222221 223444433333332222 5555 478999999876444433332 223778888765
Q ss_pred c---CCCCccccccccccccccC
Q 015527 263 T---KHPLVVTLTIHNAQFVFQD 282 (405)
Q Consensus 263 ~---~~p~v~~l~~~~~~~~~~~ 282 (405)
. .-|.+...+..+.......
T Consensus 272 ~~~a~~pt~~p~~~~~~~~~Id~ 294 (606)
T KOG1731|consen 272 KNEASGPTLHPITATTAAPTIDA 294 (606)
T ss_pred ccccCCCCcCcccccccchhhhc
Confidence 3 3455655554444444433
No 57
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.69 E-value=4.3e-16 Score=119.63 Aligned_cols=100 Identities=12% Similarity=0.164 Sum_probs=83.7
Q ss_pred CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccH-----------hHHHhCC
Q 015527 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----------DLAKEYN 124 (405)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~-----------~~~~~~~ 124 (405)
..+..++.+++.+.+.+++.++|+|+++||++|+.+.|.+.+++++. ++.++.||.+.++ ++.++|+
T Consensus 6 ~~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 6 KGLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred ccceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 45678899999999999999999999999999999999999999983 4677778877442 4556665
Q ss_pred ----CcccceEEEEeCCeeeeeecC-CCCHHHHHHHHH
Q 015527 125 ----ILAYPTLYLFVAGVRQFQFFG-ERTRDVISAWVR 157 (405)
Q Consensus 125 ----i~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i~ 157 (405)
|.++||+++|++|+.+.+..| ..+.++|.+++.
T Consensus 84 i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 84 IPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 556999999999999999988 456888888763
No 58
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.68 E-value=4.2e-16 Score=121.57 Aligned_cols=98 Identities=17% Similarity=0.317 Sum_probs=84.8
Q ss_pred hhHHHHHcCC-CcEEEEEecCCChhHhhhHHHHH---HHHHHccCCcEEEEEeCccc-------------HhHHHhCCCc
Q 015527 64 KNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFA---AAAKMLKGEADLVMVDAYLE-------------KDLAKEYNIL 126 (405)
Q Consensus 64 ~~~~~~~~~~-~~~~v~f~a~~C~~C~~~~~~~~---~~~~~~~~~v~~~~v~~~~~-------------~~~~~~~~i~ 126 (405)
+.+.....++ ++++|.||++||++|+.++|.+. .+.+.+++++.++.||.+.+ .+++++|+|.
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 4566677888 99999999999999999999884 56666766788999998864 6899999999
Q ss_pred ccceEEEEe-C-CeeeeeecCCCCHHHHHHHHHhhhc
Q 015527 127 AYPTLYLFV-A-GVRQFQFFGERTRDVISAWVREKMT 161 (405)
Q Consensus 127 ~~Pt~~~~~-~-g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (405)
++||+++++ + |+.+.++.|..+.+.+.++|+..+.
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 999999999 5 6888999999999999999987764
No 59
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.68 E-value=1.2e-15 Score=127.03 Aligned_cols=88 Identities=13% Similarity=0.260 Sum_probs=74.7
Q ss_pred cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccH-----------------------hHHHhCCCcc
Q 015527 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----------------------DLAKEYNILA 127 (405)
Q Consensus 71 ~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~-----------------------~~~~~~~i~~ 127 (405)
..+++++|+||++||++|++++|.+.+++++ ++.++.|+.++++ .+++.|++.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 4689999999999999999999999998653 5778888765432 2455789999
Q ss_pred cceEEEEe-CCeeeeeecCCCCHHHHHHHHHhhhc
Q 015527 128 YPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (405)
Q Consensus 128 ~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (405)
+|++++++ +|++..++.|..+.+.+.++|+..+.
T Consensus 143 ~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 143 APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 99999997 99999999999999999999988774
No 60
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.68 E-value=6.5e-16 Score=126.34 Aligned_cols=89 Identities=18% Similarity=0.222 Sum_probs=80.2
Q ss_pred CCCcEEcCh-hhHHHHHcCC---CcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccce
Q 015527 55 AKDVVSLNG-KNFSEFMGKN---RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT 130 (405)
Q Consensus 55 ~~~~~~l~~-~~~~~~~~~~---~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt 130 (405)
...+.+++. ++|...+... .+++|.||++||++|+.+.|.+.++++++. .+.|+.||+++. .++.+|+|.++||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCE
Confidence 467888988 9999888543 489999999999999999999999999987 699999999987 8999999999999
Q ss_pred EEEEeCCeeeeeecC
Q 015527 131 LYLFVAGVRQFQFFG 145 (405)
Q Consensus 131 ~~~~~~g~~~~~~~g 145 (405)
+++|++|+.+.++.|
T Consensus 139 lllyk~G~~v~~~vG 153 (175)
T cd02987 139 LLVYKGGELIGNFVR 153 (175)
T ss_pred EEEEECCEEEEEEec
Confidence 999999988877765
No 61
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.68 E-value=5e-16 Score=118.04 Aligned_cols=94 Identities=14% Similarity=0.259 Sum_probs=82.2
Q ss_pred HHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeee--eee
Q 015527 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ--FQF 143 (405)
Q Consensus 66 ~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~--~~~ 143 (405)
|.+.+..+..++|.||++||++|+.+.|.++++++.+ +.+.+..||.+++++++++|+|.++||+++|++|... .++
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~ 93 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRY 93 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEE
Confidence 5555566677899999999999999999999999887 5799999999999999999999999999999976433 378
Q ss_pred cCCCCHHHHHHHHHhhh
Q 015527 144 FGERTRDVISAWVREKM 160 (405)
Q Consensus 144 ~g~~~~~~l~~~i~~~~ 160 (405)
.|..+.+++.+||...+
T Consensus 94 ~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 94 YGLPAGYEFASLIEDIV 110 (113)
T ss_pred EecCchHHHHHHHHHHH
Confidence 89999999999998765
No 62
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.68 E-value=7.9e-16 Score=113.40 Aligned_cols=91 Identities=26% Similarity=0.493 Sum_probs=84.3
Q ss_pred hHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeeeeeec
Q 015527 65 NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFF 144 (405)
Q Consensus 65 ~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~ 144 (405)
+|++.+..+++++|.||++||++|+.+.+.++++++. .+++.++.+|++.++.++++|++.++|+++++++|+....+.
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~ 80 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVV 80 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEe
Confidence 5677777779999999999999999999999999988 558999999999999999999999999999999998889999
Q ss_pred CCCCHHHHHHHH
Q 015527 145 GERTRDVISAWV 156 (405)
Q Consensus 145 g~~~~~~l~~~i 156 (405)
|..+.+.|.+||
T Consensus 81 g~~~~~~l~~~i 92 (93)
T cd02947 81 GADPKEELEEFL 92 (93)
T ss_pred cCCCHHHHHHHh
Confidence 999989998887
No 63
>PTZ00102 disulphide isomerase; Provisional
Probab=99.67 E-value=4.9e-16 Score=150.16 Aligned_cols=113 Identities=22% Similarity=0.381 Sum_probs=100.2
Q ss_pred CccCCCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC--CcEEEEEeCcccHhHHHhCCCccc
Q 015527 52 LLYAKDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNILAY 128 (405)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~-~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~i~~~ 128 (405)
......+..+++++|++.+ +++++++|.|||+||++|+.+.|.|+++++.+++ .+.++.+||+.+...++.++++++
T Consensus 353 ~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~ 432 (477)
T PTZ00102 353 EEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAF 432 (477)
T ss_pred CCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCccc
Confidence 3345678999999999875 7789999999999999999999999999999875 599999999999999999999999
Q ss_pred ceEEEEeCCe-eeeeecCCCCHHHHHHHHHhhhcCCc
Q 015527 129 PTLYLFVAGV-RQFQFFGERTRDVISAWVREKMTLGT 164 (405)
Q Consensus 129 Pt~~~~~~g~-~~~~~~g~~~~~~l~~~i~~~~~~~~ 164 (405)
||+++|++|. ...+|.|.++.+.|.+||.++...+.
T Consensus 433 Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~~ 469 (477)
T PTZ00102 433 PTILFVKAGERTPIPYEGERTVEGFKEFVNKHATNPF 469 (477)
T ss_pred CeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCCc
Confidence 9999999664 45689999999999999999886433
No 64
>PTZ00062 glutaredoxin; Provisional
Probab=99.67 E-value=5.5e-15 Score=122.58 Aligned_cols=161 Identities=11% Similarity=0.100 Sum_probs=113.9
Q ss_pred ChhhHHHHHcCC-CcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeee
Q 015527 62 NGKNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (405)
Q Consensus 62 ~~~~~~~~~~~~-~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 140 (405)
+.+++++.+.++ ..++++|||+||++|+.+.|.+.+++++++ ++.|+.||.+ |+|.++||+++|++|+.+
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA--------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc--------cCcccceEEEEEECCEEE
Confidence 467788888654 789999999999999999999999999997 6999999976 999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHhhhcCCccccCChhHHHHHhccCCeEEEEEEc-----CCCCccHHHHHHHhccCCcceEE-Ee
Q 015527 141 FQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLH-----DLEGMESEELAAASKLHSDVNFY-QT 214 (405)
Q Consensus 141 ~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~l~~~~~~~v~f~~-----~~~~~~~~~~~~~a~~~~~~~f~-~~ 214 (405)
.++.|. +...+..++.+..++....- ..+.+++++++++++ +|.. ++|..+.+....+.+..-.+... ..
T Consensus 76 ~r~~G~-~~~~~~~~~~~~~~~~~~~~-~~~~v~~li~~~~Vv--vf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~ 151 (204)
T PTZ00062 76 NSLEGC-NTSTLVSFIRGWAQKGSSED-TVEKIERLIRNHKIL--LFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIF 151 (204)
T ss_pred eeeeCC-CHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhcCCEE--EEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcC
Confidence 999986 69999999998876543221 123455555555543 3554 46777766666665443333322 22
Q ss_pred cCHHHHhhcC-CCCCCCCCeEE
Q 015527 215 TSADVAEFFH-IHPKSKRPALI 235 (405)
Q Consensus 215 ~~~~l~~~~~-~~~~~~~p~i~ 235 (405)
.+.++.+.+. .++....|.+.
T Consensus 152 ~d~~~~~~l~~~sg~~TvPqVf 173 (204)
T PTZ00062 152 EDPDLREELKVYSNWPTYPQLY 173 (204)
T ss_pred CCHHHHHHHHHHhCCCCCCeEE
Confidence 4455544332 11112356655
No 65
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=3.6e-16 Score=127.98 Aligned_cols=98 Identities=26% Similarity=0.341 Sum_probs=89.1
Q ss_pred ChhhHHHHHc--CCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCee
Q 015527 62 NGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (405)
Q Consensus 62 ~~~~~~~~~~--~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 139 (405)
++.+|+..+. .++.++|.|+|+||+||+...|.|..++++|. +..|++||.++.+..+..+||.+.||+++|++|..
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k 86 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK 86 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhchhhhcCcccCceEEEEecCeE
Confidence 4577887773 45799999999999999999999999999997 69999999999999999999999999999999988
Q ss_pred eeeecCCCCHHHHHHHHHhhhc
Q 015527 140 QFQFFGERTRDVISAWVREKMT 161 (405)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~~~ 161 (405)
+.++.|. ++..|++-+.++..
T Consensus 87 id~~qGA-d~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 87 IDQIQGA-DASGLEEKVAKYAS 107 (288)
T ss_pred eeeecCC-CHHHHHHHHHHHhc
Confidence 8999986 88899999988874
No 66
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=5.9e-16 Score=142.36 Aligned_cols=110 Identities=27% Similarity=0.500 Sum_probs=94.8
Q ss_pred CCCccC-CCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC--CcEEEEEeCcccHhHHHhCCC
Q 015527 50 WPLLYA-KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNI 125 (405)
Q Consensus 50 ~~~~~~-~~~~~l~~~~~~~~~-~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~i 125 (405)
-|...+ .+|..+-++||++.+ +.++.|||.||||||+||+++.|.|++|++.+++ +|.++.+|.+.|.- ....+
T Consensus 359 iPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~--~~~~~ 436 (493)
T KOG0190|consen 359 IPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV--PSLKV 436 (493)
T ss_pred CCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC--ccccc
Confidence 344444 569999999999888 7789999999999999999999999999999998 79999999988853 34567
Q ss_pred cccceEEEEeCC--eeeeeecCCCCHHHHHHHHHhhhc
Q 015527 126 LAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREKMT 161 (405)
Q Consensus 126 ~~~Pt~~~~~~g--~~~~~~~g~~~~~~l~~~i~~~~~ 161 (405)
.++||++++..| +.+..|.|.++.+++..|+.+.-.
T Consensus 437 ~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 437 DGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred cccceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 779999999955 367899999999999999987764
No 67
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.63 E-value=5.1e-15 Score=122.70 Aligned_cols=105 Identities=19% Similarity=0.307 Sum_probs=87.9
Q ss_pred CCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc------------------
Q 015527 55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL------------------ 115 (405)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~------------------ 115 (405)
...+..++++.++.....+++++|+||++||++|+...+.+.++++++++ ++.++.|+++.
T Consensus 43 ~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~ 122 (173)
T PRK03147 43 NFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPV 122 (173)
T ss_pred CcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceE
Confidence 34556677776654444678999999999999999999999999999976 58888888753
Q ss_pred ----cHhHHHhCCCcccceEEEEe-CCeeeeeecCCCCHHHHHHHHHhh
Q 015527 116 ----EKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREK 159 (405)
Q Consensus 116 ----~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 159 (405)
+..+++.|++.++|++++++ +|+++..+.|..+.+++.+++.+.
T Consensus 123 ~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 123 AIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred EECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 35678999999999999998 888888999999999999988754
No 68
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.61 E-value=8.9e-15 Score=137.51 Aligned_cols=102 Identities=22% Similarity=0.230 Sum_probs=82.8
Q ss_pred CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEE-----------------------
Q 015527 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMV----------------------- 111 (405)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v----------------------- 111 (405)
..+.+++++... +.++++++|+|||+||++|+.++|.+++++++++. ++.++.|
T Consensus 41 f~l~D~dG~~v~--lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y 118 (521)
T PRK14018 41 LKTADNRPASVY--LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDY 118 (521)
T ss_pred eEeecCCCceee--ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCC
Confidence 344555554443 34789999999999999999999999999999874 4555544
Q ss_pred -----eCcccHhHHHhCCCcccceEEEEe-CCeeeeeecCCCCHHHHHHHHHhh
Q 015527 112 -----DAYLEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREK 159 (405)
Q Consensus 112 -----~~~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 159 (405)
+++.+..+++.|+|.++|++++++ +|+++.++.|..+.++|.++|+..
T Consensus 119 ~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 119 PKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred cccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 334566788999999999998886 899999999999999999999844
No 69
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.58 E-value=3.8e-14 Score=112.80 Aligned_cols=88 Identities=11% Similarity=0.223 Sum_probs=69.0
Q ss_pred cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCccc------------HhHH-HhC---CCcccceEEEE
Q 015527 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE------------KDLA-KEY---NILAYPTLYLF 134 (405)
Q Consensus 71 ~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~------------~~~~-~~~---~i~~~Pt~~~~ 134 (405)
..++..+|+|||+||++|++++|.+++++++++ +.++.|+.++. .... ..| ++.++||++++
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 345678999999999999999999999999984 55666665542 2333 345 78999999999
Q ss_pred e-CCee-eeeecCCCCHHHHHHHHHhhh
Q 015527 135 V-AGVR-QFQFFGERTRDVISAWVREKM 160 (405)
Q Consensus 135 ~-~g~~-~~~~~g~~~~~~l~~~i~~~~ 160 (405)
+ +|+. ...+.|..+.+++.+.|.+.+
T Consensus 126 D~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred eCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 8 6654 457899999999998887653
No 70
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.58 E-value=2.4e-14 Score=118.59 Aligned_cols=89 Identities=16% Similarity=0.208 Sum_probs=77.9
Q ss_pred cCCCcEEcChhhHHHHH-cC--CCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccce
Q 015527 54 YAKDVVSLNGKNFSEFM-GK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT 130 (405)
Q Consensus 54 ~~~~~~~l~~~~~~~~~-~~--~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt 130 (405)
..+.+..++..+|...+ .. +.+|+|.||++||++|+.+.|.|+++|+++. .+.|+.||++.. +..|++.++||
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lPT 155 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLPT 155 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCCE
Confidence 34778899999999765 33 3489999999999999999999999999997 699999998753 68999999999
Q ss_pred EEEEeCCeeeeeecCC
Q 015527 131 LYLFVAGVRQFQFFGE 146 (405)
Q Consensus 131 ~~~~~~g~~~~~~~g~ 146 (405)
+++|++|+.+.++.|.
T Consensus 156 lliyk~G~~v~~ivG~ 171 (192)
T cd02988 156 ILVYRNGDIVKQFIGL 171 (192)
T ss_pred EEEEECCEEEEEEeCc
Confidence 9999999988888873
No 71
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.58 E-value=1.6e-14 Score=108.72 Aligned_cols=94 Identities=21% Similarity=0.272 Sum_probs=80.4
Q ss_pred HHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCc--ccceEEEEeC--Ceeee
Q 015527 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL--AYPTLYLFVA--GVRQF 141 (405)
Q Consensus 66 ~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~--~~Pt~~~~~~--g~~~~ 141 (405)
+......++++++.|+++||++|+.+.|.+.++++++++++.|+.||+++++.+++.||+. ++|+++++++ |+...
T Consensus 5 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~ 84 (103)
T cd02982 5 FFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYL 84 (103)
T ss_pred HhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccC
Confidence 3333334689999999999999999999999999999989999999999999999999999 9999999997 64433
Q ss_pred eecCCCCHHHHHHHHHhh
Q 015527 142 QFFGERTRDVISAWVREK 159 (405)
Q Consensus 142 ~~~g~~~~~~l~~~i~~~ 159 (405)
...|..+.+.|.+|+.+.
T Consensus 85 ~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 85 MPEEELTAESLEEFVEDF 102 (103)
T ss_pred CCccccCHHHHHHHHHhh
Confidence 334556999999999864
No 72
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.57 E-value=2.8e-14 Score=102.45 Aligned_cols=80 Identities=18% Similarity=0.363 Sum_probs=72.5
Q ss_pred EEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeeeeeecCCCCHHHHHHH
Q 015527 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAW 155 (405)
Q Consensus 76 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 155 (405)
.+..||++||++|+.+.|.++++++.++..+.+..||++++++++++|++.++||+++ +|+ .++.|..+.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHH
Confidence 4678999999999999999999999987789999999999999999999999999986 774 378899999999999
Q ss_pred HHhh
Q 015527 156 VREK 159 (405)
Q Consensus 156 i~~~ 159 (405)
+.+.
T Consensus 78 l~~~ 81 (82)
T TIGR00411 78 IKKR 81 (82)
T ss_pred HHhh
Confidence 8765
No 73
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.57 E-value=1.5e-14 Score=108.90 Aligned_cols=106 Identities=17% Similarity=0.128 Sum_probs=92.6
Q ss_pred ccccccccccccccCCccEEEEEecCCCcHHHHHHHHHHHHH---hcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEE
Q 015527 268 VVTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKA---LKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVI 344 (405)
Q Consensus 268 v~~l~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~va~~---~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i 344 (405)
|+++|.+|+..+++.+.|..++|...++.+.+...++++|++ ++++++|+++|.+... ..++.||++.+..|++
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~---~~~~~fgl~~~~~P~i 77 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFR---HPLLHLGKTPADLPVI 77 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhh---hHHHHcCCCHhHCCEE
Confidence 578899999999999997665544555578899999999999 9999999999999865 4789999998789999
Q ss_pred EEEeC-CCcccc-CCCCCCHHHHHHHHHHHhcCc
Q 015527 345 AYSAR-DAKKYV-LNGELTLSSIKSFGEEFLEDK 376 (405)
Q Consensus 345 ~i~~~-~~~~y~-~~~~~~~~~l~~Fi~~~~~Gk 376 (405)
++.+. .+.+|. ++++++.++|.+|++++++|+
T Consensus 78 ~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 78 AIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred EEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 99988 447998 788999999999999999996
No 74
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.55 E-value=5.7e-12 Score=121.55 Aligned_cols=306 Identities=18% Similarity=0.241 Sum_probs=210.5
Q ss_pred CCcEEcC-hhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEE
Q 015527 56 KDVVSLN-GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (405)
Q Consensus 56 ~~~~~l~-~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 134 (405)
..+..++ .++++..+....+.+|.|+.. .. ......+.++++.+.+...+.... .+..+...+++. .|++.++
T Consensus 111 ~~~~~i~~~~~~~~~~~~~~~~vi~~~~~-~~--~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~ 184 (462)
T TIGR01130 111 PAVKEIETVADLEAFLADDDVVVIGFFKD-LD--SELNDTFLSVAEKLRDVYFFFAHS--SDVAAFAKLGAF-PDSVVLF 184 (462)
T ss_pred CCceeecCHHHHHHHHhcCCcEEEEEECC-CC--cHHHHHHHHHHHHhhhccceEEec--CCHHHHhhcCCC-CCcEEEe
Confidence 3445564 678888887778888888765 22 366778888999887755533222 344677777765 3566666
Q ss_pred e-C--CeeeeeecCCC--CHHHHHHHHHhhhcCCccccCChhHHHHHhccCCeEEEEEEcCCC-----CccHHHHHHHh-
Q 015527 135 V-A--GVRQFQFFGER--TRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLE-----GMESEELAAAS- 203 (405)
Q Consensus 135 ~-~--g~~~~~~~g~~--~~~~l~~~i~~~~~~~~~~i~~~~~~~~~l~~~~~~~v~f~~~~~-----~~~~~~~~~~a- 203 (405)
+ . +.....|.|.. +.+.|..||....-|.+..+ +.+.+....+.. +.++.|+.... ....+.+..+|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~ 262 (462)
T TIGR01130 185 KPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEF-TQETAAKYFESG-PLVVLYYNVDESLDPFEELRNRFLEAAK 262 (462)
T ss_pred cccccccccccccCcccCCHHHHHHHHHHcCCCceEee-CCcchhhHhCCC-CceeEEEEecCCchHHHHHHHHHHHHHH
Confidence 5 2 22224567765 56899999999998888888 456666666665 44444443322 22456677777
Q ss_pred ccCC-cceEEEecC---HHHHhhcCCCCCCCCCeEEEeecCCCccccccC-CCCHHHHHHHHhccC--------------
Q 015527 204 KLHS-DVNFYQTTS---ADVAEFFHIHPKSKRPALIFLHLEAGKATPFRH-QFTRLAIANFVTHTK-------------- 264 (405)
Q Consensus 204 ~~~~-~~~f~~~~~---~~l~~~~~~~~~~~~p~i~~~~~~~~~~~~y~g-~~~~~~l~~fi~~~~-------------- 264 (405)
++.+ .+.|+.+.. ..++..++++. ...|.++++...+.....+.+ .++.+.|.+|++...
T Consensus 263 ~~~~~~i~f~~~d~~~~~~~~~~~~~~~-~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p 341 (462)
T TIGR01130 263 KFRGKFVNFAVADEEDFGRELEYFGLKA-EKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIP 341 (462)
T ss_pred HCCCCeEEEEEecHHHhHHHHHHcCCCc-cCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCC
Confidence 5554 778887654 45777888873 248999999865423455555 688899999998632
Q ss_pred ---CCCccccccccccccccC-CccE-EEEEecCCC-cHHHHHHHHHHHHHhcC---cEEEEEEEcCCcchhhhhhhhcC
Q 015527 265 ---HPLVVTLTIHNAQFVFQD-PRKQ-LWLFAPAYG-SDKVILTFEEVAKALKG---KLLHVYVEMNSEGVGRRVSQEFG 335 (405)
Q Consensus 265 ---~p~v~~l~~~~~~~~~~~-~~~~-~i~f~~~~~-~~~~~~~~~~va~~~~~---~~~f~~id~~~~~~~~~~~~~~g 335 (405)
...+..++..++..+... +.++ +.++++||. |+.+.+.+.++|+.+++ ++.|+.+|++.. .+.. ++
T Consensus 342 ~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n----~~~~-~~ 416 (462)
T TIGR01130 342 EDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN----DVPP-FE 416 (462)
T ss_pred ccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC----ccCC-CC
Confidence 113456777888776543 3344 446778887 99999999999999998 799999999864 3334 67
Q ss_pred CCCCCCcEEEEEeCCCc--cccCCCCCCHHHHHHHHHHHhcCce
Q 015527 336 VSGNAPRVIAYSARDAK--KYVLNGELTLSSIKSFGEEFLEDKL 377 (405)
Q Consensus 336 i~~~~~p~i~i~~~~~~--~y~~~~~~~~~~l~~Fi~~~~~Gkl 377 (405)
+. ..|.++++..++. ...+.|..+.++|.+|+++..+.++
T Consensus 417 i~--~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 417 VE--GFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPL 458 (462)
T ss_pred cc--ccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCC
Confidence 65 3789999876332 2457888999999999999887654
No 75
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.53 E-value=6.7e-14 Score=115.42 Aligned_cols=89 Identities=20% Similarity=0.288 Sum_probs=73.8
Q ss_pred HcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeC-----------------------cccHhHHHhCCCc
Q 015527 70 MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA-----------------------YLEKDLAKEYNIL 126 (405)
Q Consensus 70 ~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~-----------------------~~~~~~~~~~~i~ 126 (405)
..++++++|+||++||++|+++.|.+++++++ ++.++.|+. +.+..+.+.|++.
T Consensus 60 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~ 136 (173)
T TIGR00385 60 FIQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY 136 (173)
T ss_pred hcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe
Confidence 34689999999999999999999999988764 355565553 3334567789999
Q ss_pred ccceEEEEe-CCeeeeeecCCCCHHHHHHHHHhhhc
Q 015527 127 AYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (405)
Q Consensus 127 ~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (405)
++|++++++ +|++..++.|..+.+++.+++.+.+.
T Consensus 137 ~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 137 GAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 999988887 99889999999999999999988763
No 76
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.53 E-value=4.6e-14 Score=106.58 Aligned_cols=77 Identities=17% Similarity=0.342 Sum_probs=67.8
Q ss_pred ChhhHHHHHcC--CCcEEEEEec-------CCChhHhhhHHHHHHHHHHccCCcEEEEEeCcc-------cHhHHHhCCC
Q 015527 62 NGKNFSEFMGK--NRNVMVMFYA-------NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-------EKDLAKEYNI 125 (405)
Q Consensus 62 ~~~~~~~~~~~--~~~~~v~f~a-------~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~-------~~~~~~~~~i 125 (405)
+.++|.+.+.. +++++|.||| +||++|+.+.|.++++++++++++.|+.||+++ +.++..+++|
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I 87 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL 87 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc
Confidence 35677777754 6899999999 999999999999999999998779999999976 4589999999
Q ss_pred c-ccceEEEEeCCe
Q 015527 126 L-AYPTLYLFVAGV 138 (405)
Q Consensus 126 ~-~~Pt~~~~~~g~ 138 (405)
. ++||+++|++|+
T Consensus 88 ~~~iPT~~~~~~~~ 101 (119)
T cd02952 88 TTGVPTLLRWKTPQ 101 (119)
T ss_pred ccCCCEEEEEcCCc
Confidence 9 999999998763
No 77
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.49 E-value=2.2e-13 Score=106.60 Aligned_cols=87 Identities=16% Similarity=0.317 Sum_probs=70.1
Q ss_pred hhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEe-----------------------CcccHhHH
Q 015527 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD-----------------------AYLEKDLA 120 (405)
Q Consensus 64 ~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~-----------------------~~~~~~~~ 120 (405)
..+......+++++|.||++||++|+++.|.++++++.++ +.++.|+ ++.+..++
T Consensus 16 ~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 93 (127)
T cd03010 16 KTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVG 93 (127)
T ss_pred ccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHH
Confidence 3344333458899999999999999999999999988863 6666555 34556788
Q ss_pred HhCCCcccceEEEEe-CCeeeeeecCCCCHHHH
Q 015527 121 KEYNILAYPTLYLFV-AGVRQFQFFGERTRDVI 152 (405)
Q Consensus 121 ~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l 152 (405)
+.|++.++|++++++ +|++..++.|..+.+.|
T Consensus 94 ~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 94 IDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred HhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 899999999888887 99889999999887754
No 78
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.49 E-value=5.7e-14 Score=107.18 Aligned_cols=96 Identities=17% Similarity=0.267 Sum_probs=70.8
Q ss_pred hhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccH-hHHHhCCCcc--cceEEEEe-CCee
Q 015527 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-DLAKEYNILA--YPTLYLFV-AGVR 139 (405)
Q Consensus 64 ~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~-~~~~~~~i~~--~Pt~~~~~-~g~~ 139 (405)
+.+.....++++++|.|||+||++|+.+.|.+.+..........|+.|+.+.++ ...+.|++.+ +||+++++ +|+.
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCC
Confidence 344555578899999999999999999999999977654444456666666554 4567889876 99999997 9977
Q ss_pred ee---eecCCCCHHHHHHHHHhh
Q 015527 140 QF---QFFGERTRDVISAWVREK 159 (405)
Q Consensus 140 ~~---~~~g~~~~~~l~~~i~~~ 159 (405)
+. ...|..+...+.+.+...
T Consensus 90 ~~~~~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 90 HPEIINKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred chhhccCCCCccccccCCCHHHH
Confidence 65 444666666655555443
No 79
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.48 E-value=3.8e-13 Score=108.67 Aligned_cols=84 Identities=13% Similarity=0.185 Sum_probs=70.2
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCccc-------------HhHHHhCCC--cccceEEEEe-CCeee
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-------------KDLAKEYNI--LAYPTLYLFV-AGVRQ 140 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~-------------~~~~~~~~i--~~~Pt~~~~~-~g~~~ 140 (405)
+|+||++||++|++++|.+.+++++++ +.++.|+.++. ..+.+.|++ .++|++++++ +|++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 888999999999999999999999984 77777776533 236678885 6999999998 88765
Q ss_pred -eeecCCCCHHHHHHHHHhhhcC
Q 015527 141 -FQFFGERTRDVISAWVREKMTL 162 (405)
Q Consensus 141 -~~~~g~~~~~~l~~~i~~~~~~ 162 (405)
..+.|..+.+++.+.+.+.+.-
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHhh
Confidence 4799999999999999888754
No 80
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.45 E-value=3.6e-13 Score=102.91 Aligned_cols=85 Identities=24% Similarity=0.463 Sum_probs=66.5
Q ss_pred CCCcEEEEEecCCChhHhhhHHHHHH---HHHHccCCcEEEEEeCccc--------------------HhHHHhCCCccc
Q 015527 72 KNRNVMVMFYANWCYWSKKLAPEFAA---AAKMLKGEADLVMVDAYLE--------------------KDLAKEYNILAY 128 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~~~~~---~~~~~~~~v~~~~v~~~~~--------------------~~~~~~~~i~~~ 128 (405)
+++++++.||++||++|+.+.+.+.+ +...+.+++.++.++++.. .++++.+||.++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 57899999999999999999998875 4455555688888887654 358899999999
Q ss_pred ceEEEEe-CCeeeeeecCCCCHHHHHHHH
Q 015527 129 PTLYLFV-AGVRQFQFFGERTRDVISAWV 156 (405)
Q Consensus 129 Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i 156 (405)
||+++++ +|+.+.++.|..+.++|.+++
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999998 898889999999999998875
No 81
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.42 E-value=8.5e-13 Score=103.68 Aligned_cols=70 Identities=20% Similarity=0.261 Sum_probs=58.2
Q ss_pred CCCcEEEEEecCCChhHhhhHHHHHHHHHHccC--------CcEEEEEeCccc-------------------------Hh
Q 015527 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--------EADLVMVDAYLE-------------------------KD 118 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~--------~v~~~~v~~~~~-------------------------~~ 118 (405)
++++++|+|||+||++|++++|.+.++++++++ ++.++.|+.+++ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 679999999999999999999999998876643 488888886542 24
Q ss_pred HHHhCCCcccceEEEEe-CCeeee
Q 015527 119 LAKEYNILAYPTLYLFV-AGVRQF 141 (405)
Q Consensus 119 ~~~~~~i~~~Pt~~~~~-~g~~~~ 141 (405)
+++.|++.++|++++++ +|+++.
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEe
Confidence 67789999999999998 885554
No 82
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.42 E-value=1.5e-12 Score=99.54 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=73.7
Q ss_pred ChhhHHHHHcCCCcEEEEEecCCChhHhhhHHH-H--HHHHHHccCCcEEEEEeCcccHhHHH--------hCCCcccce
Q 015527 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPE-F--AAAAKMLKGEADLVMVDAYLEKDLAK--------EYNILAYPT 130 (405)
Q Consensus 62 ~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~-~--~~~~~~~~~~v~~~~v~~~~~~~~~~--------~~~i~~~Pt 130 (405)
+++.+.....++++++|.|+|+||++|+.+.+. | .++++.+..++.++.||.++.+++++ .|++.++|+
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 345677788899999999999999999999874 3 35677666689999999999887765 358999999
Q ss_pred EEEEe-CCeeeeeecCC-----CCHHHHHHHHHh
Q 015527 131 LYLFV-AGVRQFQFFGE-----RTRDVISAWVRE 158 (405)
Q Consensus 131 ~~~~~-~g~~~~~~~g~-----~~~~~l~~~i~~ 158 (405)
+++++ +|+.+....+. .+...+..++.+
T Consensus 84 ~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (124)
T cd02955 84 NVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEK 117 (124)
T ss_pred EEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHH
Confidence 99998 88777554332 333455555443
No 83
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.6e-12 Score=121.31 Aligned_cols=181 Identities=27% Similarity=0.398 Sum_probs=130.4
Q ss_pred CcEEcChhhHHHHH-cCCCcEEEEEecCCChhHhhhHHHHHHHHHHcc--CCcEEEEEeCcccHhHHHhCCCcccceEEE
Q 015527 57 DVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYLEKDLAKEYNILAYPTLYL 133 (405)
Q Consensus 57 ~~~~l~~~~~~~~~-~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~--~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 133 (405)
.+..++..+|+..+ .....++|.||+|||+||+.++|+|.+++..++ ..+.++.+||+.+..+|..++|.++||+.+
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEE
Confidence 48899999999766 556789999999999999999999999999986 389999999999999999999999999999
Q ss_pred EeCCee-eeeecCCCCHHHHHHHHHhhhcCC-----ccccCChh-HHHHH---------hccCCeEEEEEEcCCCCc---
Q 015527 134 FVAGVR-QFQFFGERTRDVISAWVREKMTLG-----TYSITTTD-EAERI---------LTVESKLVLGFLHDLEGM--- 194 (405)
Q Consensus 134 ~~~g~~-~~~~~g~~~~~~l~~~i~~~~~~~-----~~~i~~~~-~~~~~---------l~~~~~~~v~f~~~~~~~--- 194 (405)
|.+|.. ...+.|.++.+.+.+|+.+...+. +....+.+ ....+ .......++.++..|+..
T Consensus 225 f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (383)
T KOG0191|consen 225 FPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWCGHCGG 304 (383)
T ss_pred ecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhhHHhhhhHhhhhcchhhcccc
Confidence 998766 677889999999999999888662 22222221 00111 112234566677777755
Q ss_pred cHHHHHHHhcc----CCcceEEEe---cCHHHHhhcCCCCCCCCCeEEEeecC
Q 015527 195 ESEELAAASKL----HSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLE 240 (405)
Q Consensus 195 ~~~~~~~~a~~----~~~~~f~~~---~~~~l~~~~~~~~~~~~p~i~~~~~~ 240 (405)
..+.+...+.. ...+.+... ....++.....+ .+|++.+++.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 354 (383)
T KOG0191|consen 305 FAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAIVR---GYPTIKLYNYG 354 (383)
T ss_pred cchhHHHHHhccccccccceeeccccccccchhhHhhhh---cCceeEeeccc
Confidence 45555555533 233333322 222255555555 47888777654
No 84
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.40 E-value=3.5e-12 Score=98.89 Aligned_cols=109 Identities=17% Similarity=0.245 Sum_probs=86.1
Q ss_pred CCccccccccc-cccccCCccEEEEEecCC------CcHHHHHHHHHHHHHhcCc-EEEEEEEcCCcchhhhhhhhcCCC
Q 015527 266 PLVVTLTIHNA-QFVFQDPRKQLWLFAPAY------GSDKVILTFEEVAKALKGK-LLHVYVEMNSEGVGRRVSQEFGVS 337 (405)
Q Consensus 266 p~v~~l~~~~~-~~~~~~~~~~~i~f~~~~------~~~~~~~~~~~va~~~~~~-~~f~~id~~~~~~~~~~~~~~gi~ 337 (405)
|-+.+++.++. ........-.+|.|.+.. +.+++...++++|++|+++ +.|+|+|++... .+.+.||++
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~---~~~~~fgl~ 78 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQL---DLEEALNIG 78 (130)
T ss_pred CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccH---HHHHHcCCC
Confidence 34556665543 334444334566666641 2567889999999999999 999999999865 688999998
Q ss_pred CCCCcEEEEEeCCCcccc-CCCCCCHHHHHHHHHHHhcCce
Q 015527 338 GNAPRVIAYSARDAKKYV-LNGELTLSSIKSFGEEFLEDKL 377 (405)
Q Consensus 338 ~~~~p~i~i~~~~~~~y~-~~~~~~~~~l~~Fi~~~~~Gkl 377 (405)
.+..|++++++.++.+|. +.+++|.++|.+|++++++|++
T Consensus 79 ~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 79 GFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred ccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 778999999988433888 8899999999999999999998
No 85
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.40 E-value=2.3e-12 Score=90.22 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=60.9
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeeeeeecCC-CCHHHHHHH
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGE-RTRDVISAW 155 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~~ 155 (405)
-|.||++||++|+.+.|.+++++++++..+.+..|| +.+.+.+|++.++|++++ +|+.. +.|. .+.+.+.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 378999999999999999999999998788888887 345588899999999999 88655 7774 455777776
Q ss_pred H
Q 015527 156 V 156 (405)
Q Consensus 156 i 156 (405)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 5
No 86
>PHA02125 thioredoxin-like protein
Probab=99.39 E-value=3.3e-12 Score=89.34 Aligned_cols=70 Identities=26% Similarity=0.325 Sum_probs=58.3
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeeeeeecCC-CCHHHHHHH
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGE-RTRDVISAW 155 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~~ 155 (405)
++.||++||++|+.+.|.++++. +.++.||++++++++++|+|.++||++ +|+.+.++.|. .+..+|.+-
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 78999999999999999987652 468999999999999999999999987 67777788885 444665543
No 87
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.38 E-value=1.9e-12 Score=101.92 Aligned_cols=72 Identities=21% Similarity=0.368 Sum_probs=58.9
Q ss_pred cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC---CcEEEEEeCccc------------------------HhHHHhC
Q 015527 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLE------------------------KDLAKEY 123 (405)
Q Consensus 71 ~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~---~v~~~~v~~~~~------------------------~~~~~~~ 123 (405)
..+++++|+||++||++|+.++|.+.++++++++ ++.++.|+.+.. ..+++.|
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF 95 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence 3678999999999999999999999999988864 466666666533 3577899
Q ss_pred CCcccceEEEEe-CCeeeee
Q 015527 124 NILAYPTLYLFV-AGVRQFQ 142 (405)
Q Consensus 124 ~i~~~Pt~~~~~-~g~~~~~ 142 (405)
+|.++|++++++ +|+++.+
T Consensus 96 ~v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 96 KIEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCCEEEEECCCCCEEcc
Confidence 999999999998 8865443
No 88
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.38 E-value=3.9e-12 Score=108.72 Aligned_cols=95 Identities=15% Similarity=0.183 Sum_probs=78.1
Q ss_pred EcChhhHHHHHcCCCc-EEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCe
Q 015527 60 SLNGKNFSEFMGKNRN-VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (405)
Q Consensus 60 ~l~~~~~~~~~~~~~~-~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 138 (405)
.++.+..+.+-...++ .++.||++||++|+.+.|.+++++... +++.+..+|.+.+++++++|+|.++||++++++|.
T Consensus 119 ~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~ 197 (215)
T TIGR02187 119 GLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE 197 (215)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE
Confidence 3444444444433444 555599999999999999999999885 47999999999999999999999999999998884
Q ss_pred eeeeecCCCCHHHHHHHHHh
Q 015527 139 RQFQFFGERTRDVISAWVRE 158 (405)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~ 158 (405)
. +.|....+++.+|+.+
T Consensus 198 ~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 198 E---FVGAYPEEQFLEYILS 214 (215)
T ss_pred E---EECCCCHHHHHHHHHh
Confidence 2 8899999999999875
No 89
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.37 E-value=3.5e-12 Score=123.92 Aligned_cols=97 Identities=25% Similarity=0.432 Sum_probs=81.7
Q ss_pred ChhhHHHHH----cCCCcEEEEEecCCChhHhhhHHHH---HHHHHHccCCcEEEEEeCccc----HhHHHhCCCcccce
Q 015527 62 NGKNFSEFM----GKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLE----KDLAKEYNILAYPT 130 (405)
Q Consensus 62 ~~~~~~~~~----~~~~~~~v~f~a~~C~~C~~~~~~~---~~~~~~~~~~v~~~~v~~~~~----~~~~~~~~i~~~Pt 130 (405)
+.+++++.+ .++++++|+|||+||++|+.+.+.. .++.+.++ ++.++++|++++ .+++++|++.++||
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt 537 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPT 537 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCE
Confidence 456677655 3578999999999999999998875 67777776 689999999753 68899999999999
Q ss_pred EEEEe-CCee--eeeecCCCCHHHHHHHHHhh
Q 015527 131 LYLFV-AGVR--QFQFFGERTRDVISAWVREK 159 (405)
Q Consensus 131 ~~~~~-~g~~--~~~~~g~~~~~~l~~~i~~~ 159 (405)
+++|+ +|++ ..++.|..+.+++.+++++.
T Consensus 538 ~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 538 ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred EEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 99998 8876 46889999999999999875
No 90
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.36 E-value=7.3e-12 Score=101.99 Aligned_cols=88 Identities=10% Similarity=0.027 Sum_probs=69.3
Q ss_pred HHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEE------EEEeCcc------------------------
Q 015527 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADL------VMVDAYL------------------------ 115 (405)
Q Consensus 66 ~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~------~~v~~~~------------------------ 115 (405)
++..--.||+.+|+|||+||++|+.++|.+.++.+. ++.+ ..||.++
T Consensus 52 ~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~ 128 (184)
T TIGR01626 52 WGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQ 128 (184)
T ss_pred ccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcce
Confidence 333334689999999999999999999999999654 3555 6666554
Q ss_pred -----cHhHHHhCCCcccceE-EEEe-CCeeeeeecCCCCHHHHHHHH
Q 015527 116 -----EKDLAKEYNILAYPTL-YLFV-AGVRQFQFFGERTRDVISAWV 156 (405)
Q Consensus 116 -----~~~~~~~~~i~~~Pt~-~~~~-~g~~~~~~~g~~~~~~l~~~i 156 (405)
+..+...|++.+.|+. ++++ +|++..++.|..+.+++.+.+
T Consensus 129 vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 129 VVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred EEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 2235568899999888 7887 999999999999998887733
No 91
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.36 E-value=7.6e-12 Score=109.79 Aligned_cols=88 Identities=15% Similarity=0.190 Sum_probs=73.1
Q ss_pred CCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcc-----------cHhHHHhCCCcccceEEEEeC-Cee
Q 015527 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-----------EKDLAKEYNILAYPTLYLFVA-GVR 139 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~-----------~~~~~~~~~i~~~Pt~~~~~~-g~~ 139 (405)
.+++++|+||++||++|+.++|.+++++++++ +.+..|+.+. +..+++++||.++|+++++++ |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 46899999999999999999999999999985 5666666554 357899999999999999984 544
Q ss_pred e-eeecCCCCHHHHHHHHHhhhc
Q 015527 140 Q-FQFFGERTRDVISAWVREKMT 161 (405)
Q Consensus 140 ~-~~~~g~~~~~~l~~~i~~~~~ 161 (405)
+ ....|..+.++|.+.+.....
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhc
Confidence 4 456699999999999886653
No 92
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.35 E-value=3.3e-12 Score=100.47 Aligned_cols=70 Identities=23% Similarity=0.393 Sum_probs=58.1
Q ss_pred CCCcEEEEEecCCChhHhhhHHHHHHHHHHccC---CcEEEEEeCcccH-------------------------hHHHhC
Q 015527 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEK-------------------------DLAKEY 123 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~---~v~~~~v~~~~~~-------------------------~~~~~~ 123 (405)
.+++++|.||++||++|+.++|.++++++.+++ ++.++.|+++... .+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 579999999999999999999999999998875 4777777766532 456779
Q ss_pred CCcccceEEEEe-CCeeee
Q 015527 124 NILAYPTLYLFV-AGVRQF 141 (405)
Q Consensus 124 ~i~~~Pt~~~~~-~g~~~~ 141 (405)
+|.++|++++++ +|+++.
T Consensus 96 ~v~~iPt~~lid~~G~iv~ 114 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVT 114 (132)
T ss_pred CCCCCCEEEEECCCCCEEc
Confidence 999999999998 785443
No 93
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.35 E-value=6.4e-12 Score=92.83 Aligned_cols=66 Identities=32% Similarity=0.549 Sum_probs=55.6
Q ss_pred CCcEEEEEecCCChhHhhhHHHHHHHHHHcc--CCcEEEEEeCccc-------------------------HhHHHhCCC
Q 015527 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYLE-------------------------KDLAKEYNI 125 (405)
Q Consensus 73 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~--~~v~~~~v~~~~~-------------------------~~~~~~~~i 125 (405)
|++++|.|||+||++|+++.|.+.++.++++ +++.++.|+++++ ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5899999999999999999999999999999 5899999888654 246778899
Q ss_pred cccceEEEEe-CCe
Q 015527 126 LAYPTLYLFV-AGV 138 (405)
Q Consensus 126 ~~~Pt~~~~~-~g~ 138 (405)
.++|++++++ +|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 9999999998 774
No 94
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.34 E-value=6.6e-12 Score=97.69 Aligned_cols=96 Identities=17% Similarity=0.242 Sum_probs=73.4
Q ss_pred cEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEe---------------------Cccc
Q 015527 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD---------------------AYLE 116 (405)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~---------------------~~~~ 116 (405)
+.+++++.+......+++++|.||++||++|+.+.|.+.++++.+. +..+.++ ++.+
T Consensus 5 l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (123)
T cd03011 5 ATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPD 82 (123)
T ss_pred eecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCC
Confidence 3445556666555567999999999999999999999999988743 2222221 2345
Q ss_pred HhHHHhCCCcccceEEEEeCCeeeeeecCCCCHHHHHHH
Q 015527 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAW 155 (405)
Q Consensus 117 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 155 (405)
..+++.|+|.++|+++++++|.+..++.|..+.+.|.+-
T Consensus 83 ~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 83 GVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred cHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 679999999999999999844388899999999988653
No 95
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.34 E-value=2.2e-11 Score=92.82 Aligned_cols=107 Identities=7% Similarity=0.133 Sum_probs=93.1
Q ss_pred cEEcChhhHHHHHcCCCcEEEEEecC--CChhHhhhHHHHHHHHHHccC-CcEEEEEeCcccHhHHHhCCCcccceEEEE
Q 015527 58 VVSLNGKNFSEFMGKNRNVMVMFYAN--WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (405)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~~v~f~a~--~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 134 (405)
...++..+++..+..+...++.|-.+ -++.+....-.+.+++++|.+ ++.++.||++++++++.+|||.++||+++|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~F 98 (132)
T PRK11509 19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVF 98 (132)
T ss_pred CCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence 34566688888887777777766653 467778888899999999985 699999999999999999999999999999
Q ss_pred eCCeeeeeecCCCCHHHHHHHHHhhhcCCc
Q 015527 135 VAGVRQFQFFGERTRDVISAWVREKMTLGT 164 (405)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~ 164 (405)
++|+.+.+..|.++.+.+.+||.+.+..+.
T Consensus 99 kdGk~v~~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 99 TGGNYRGVLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred ECCEEEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence 999999999999999999999999987654
No 96
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.34 E-value=6.8e-12 Score=105.29 Aligned_cols=105 Identities=15% Similarity=0.142 Sum_probs=78.3
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc-------c----HhHHHhCC
Q 015527 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLAKEYN 124 (405)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~~~~~~ 124 (405)
.+.+++++.+...-..+++++|+|||+||++|+.++|.++++++++++ ++.++.|+|++ + ...+++++
T Consensus 23 ~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~ 102 (199)
T PTZ00056 23 TVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNK 102 (199)
T ss_pred EEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcC
Confidence 344455554442223679999999999999999999999999999987 69999998742 1 22334443
Q ss_pred C------------------------------------cccc---eEEEEe-CCeeeeeecCCCCHHHHHHHHHhhhc
Q 015527 125 I------------------------------------LAYP---TLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (405)
Q Consensus 125 i------------------------------------~~~P---t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (405)
+ ..+| +.++++ +|+++.++.|..+.+.+.+.|.+++.
T Consensus 103 ~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 103 IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 2 1122 577786 99899999999999999999988874
No 97
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.32 E-value=1.2e-11 Score=105.25 Aligned_cols=106 Identities=13% Similarity=0.103 Sum_probs=80.9
Q ss_pred CCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc-------c----HhHH-H
Q 015527 55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLA-K 121 (405)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~~-~ 121 (405)
+..+.+++++.+...-..+++++|+||++||++|+.++|.++++++++++ ++.++.|+|+. + .+.+ +
T Consensus 81 dF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~ 160 (236)
T PLN02399 81 DFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACT 160 (236)
T ss_pred ceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHH
Confidence 33445566665543333579999999999999999999999999999987 69999999741 1 1222 2
Q ss_pred hCC----------------------------------CcccceEEEEe-CCeeeeeecCCCCHHHHHHHHHhhh
Q 015527 122 EYN----------------------------------ILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (405)
Q Consensus 122 ~~~----------------------------------i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (405)
+++ +...|+.++++ +|+++.+|.|..+.++|.+.|++.+
T Consensus 161 ~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 161 RFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred hcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 221 12358999998 9999999999999999999998876
No 98
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=99.32 E-value=9.9e-12 Score=93.38 Aligned_cols=101 Identities=22% Similarity=0.258 Sum_probs=82.0
Q ss_pred ccccccccccccccCCccEEEEEecC------CCcHHHHHHHHHHHHHhc-CcEEEEEEEcCCcchhhhhhhhcCCCCCC
Q 015527 268 VVTLTIHNAQFVFQDPRKQLWLFAPA------YGSDKVILTFEEVAKALK-GKLLHVYVEMNSEGVGRRVSQEFGVSGNA 340 (405)
Q Consensus 268 v~~l~~~~~~~~~~~~~~~~i~f~~~------~~~~~~~~~~~~va~~~~-~~~~f~~id~~~~~~~~~~~~~~gi~~~~ 340 (405)
+.++|.+|...++.. |++++|.+. ++.+.+...++++|++++ +++.|+++|.+++. ..++.||++.+.
T Consensus 1 v~~~~~en~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~---~~l~~fgl~~~~ 75 (111)
T cd03073 1 VGHRTKDNRAQFTKK--PLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFS---HELEEFGLDFSG 75 (111)
T ss_pred CCeeccchHHHhccC--CeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHH---HHHHHcCCCccc
Confidence 356788888887644 456665432 225788999999999999 79999999999754 578999999866
Q ss_pred --CcEEEEEeCCCccccCCCCC-CHHHHHHHHHHHh
Q 015527 341 --PRVIAYSARDAKKYVLNGEL-TLSSIKSFGEEFL 373 (405)
Q Consensus 341 --~p~i~i~~~~~~~y~~~~~~-~~~~l~~Fi~~~~ 373 (405)
.|++++.+..+++|.+++++ +.++|.+|+++++
T Consensus 76 ~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 76 GEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred CCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHhC
Confidence 89999998756899998889 9999999999874
No 99
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.32 E-value=9e-12 Score=95.57 Aligned_cols=85 Identities=33% Similarity=0.469 Sum_probs=71.2
Q ss_pred cChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCccc-----------------------
Q 015527 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE----------------------- 116 (405)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~~----------------------- 116 (405)
++++.++..-..+++++|.||++||++|+...+.+.++.+++++ ++.++.|+++.+
T Consensus 7 ~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (116)
T cd02966 7 LDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPD 86 (116)
T ss_pred CCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCc
Confidence 34444443333478999999999999999999999999999864 799999999885
Q ss_pred HhHHHhCCCcccceEEEEe-CCeeeeeecC
Q 015527 117 KDLAKEYNILAYPTLYLFV-AGVRQFQFFG 145 (405)
Q Consensus 117 ~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g 145 (405)
..+++.|++.++|++++++ +|+.+.++.|
T Consensus 87 ~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 87 GELAKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred chHHHhcCcCccceEEEECCCCcEEEEecC
Confidence 7789999999999999998 8888888776
No 100
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.28 E-value=1.8e-11 Score=126.88 Aligned_cols=89 Identities=21% Similarity=0.294 Sum_probs=78.2
Q ss_pred CCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeC---------------------------cccHhHHHhC
Q 015527 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDA---------------------------YLEKDLAKEY 123 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~---------------------------~~~~~~~~~~ 123 (405)
++++++|+|||+||++|+.++|.++++++++++ ++.++.|.+ +.+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 589999999999999999999999999999987 477777742 2234577899
Q ss_pred CCcccceEEEEe-CCeeeeeecCCCCHHHHHHHHHhhh
Q 015527 124 NILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (405)
Q Consensus 124 ~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (405)
+|.++|++++++ +|+++.++.|....+.+.+++...+
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence 999999999996 9999999999999999999998886
No 101
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.28 E-value=2.8e-11 Score=101.15 Aligned_cols=102 Identities=16% Similarity=0.249 Sum_probs=70.5
Q ss_pred CCcEEcChhhHHH--HHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEe-------------C-----cc
Q 015527 56 KDVVSLNGKNFSE--FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD-------------A-----YL 115 (405)
Q Consensus 56 ~~~~~l~~~~~~~--~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~-------------~-----~~ 115 (405)
..+.+++++++.- ....+++++|+||++||++|+.+.|.+.++.+..+.++.++..+ . ..
T Consensus 55 f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~ 134 (189)
T TIGR02661 55 FNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVV 134 (189)
T ss_pred cEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeec
Confidence 3445556655442 33467899999999999999999999999987754334333311 0 11
Q ss_pred cHhHHHhCCCcccceEEEEe-CCeeeeeecCC-CCHHHHHHHHHhh
Q 015527 116 EKDLAKEYNILAYPTLYLFV-AGVRQFQFFGE-RTRDVISAWVREK 159 (405)
Q Consensus 116 ~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~-~~~~~l~~~i~~~ 159 (405)
..++++.|++.++|+.++++ +|++..+ |. ...+.+.+.++..
T Consensus 135 ~~~i~~~y~v~~~P~~~lID~~G~I~~~--g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 135 SAEIGMAFQVGKIPYGVLLDQDGKIRAK--GLTNTREHLESLLEAD 178 (189)
T ss_pred hhHHHHhccCCccceEEEECCCCeEEEc--cCCCCHHHHHHHHHHH
Confidence 34677889999999999998 8866553 43 4556777766544
No 102
>PLN02412 probable glutathione peroxidase
Probab=99.27 E-value=3.7e-11 Score=98.22 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=78.6
Q ss_pred cEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc-------c-HhH----HHhCC
Q 015527 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E-KDL----AKEYN 124 (405)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~-------~-~~~----~~~~~ 124 (405)
+..++++.+...-..+++++|+||++||++|+..+|.++++++++++ ++.++.|+++. . .++ +++++
T Consensus 14 l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (167)
T PLN02412 14 VKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFK 93 (167)
T ss_pred EECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccC
Confidence 34445544432222579999999999999999999999999999987 69999998742 1 121 12211
Q ss_pred ----------------------------------CcccceEEEEe-CCeeeeeecCCCCHHHHHHHHHhhhc
Q 015527 125 ----------------------------------ILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (405)
Q Consensus 125 ----------------------------------i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (405)
+...|+.++++ +|+++.++.|..+.+.+.+.|++.+.
T Consensus 94 ~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 94 AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 33468999997 99999999999999999999988764
No 103
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.27 E-value=2.5e-11 Score=94.64 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=63.8
Q ss_pred CCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCc---------------------------ccHhHHHhC
Q 015527 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY---------------------------LEKDLAKEY 123 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~---------------------------~~~~~~~~~ 123 (405)
++++++|+||++||++|+..+|.++++++++++ ++.++.|+.. .+..+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 578999999999999999999999999999986 6888877542 123466778
Q ss_pred CCcccceEEEEe-CCeeeeeecCC
Q 015527 124 NILAYPTLYLFV-AGVRQFQFFGE 146 (405)
Q Consensus 124 ~i~~~Pt~~~~~-~g~~~~~~~g~ 146 (405)
++.++|++++++ +|+++.++.|+
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 999999999997 89888888875
No 104
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.27 E-value=6.4e-10 Score=93.11 Aligned_cols=167 Identities=20% Similarity=0.316 Sum_probs=127.8
Q ss_pred hhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCC-eeeeeecCC-CCHHHHHHHHHhhhcCCcccc
Q 015527 90 KLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG-VRQFQFFGE-RTRDVISAWVREKMTLGTYSI 167 (405)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g-~~~~~~~g~-~~~~~l~~~i~~~~~~~~~~i 167 (405)
.....|.++|+.+.+.+.|+.+. ++++++++++.. |++++|+++ +....|.|. .+.+.|.+||....-|.+..+
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~ 82 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPEL 82 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEE
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcccccccc
Confidence 45678999999999889999887 778999999998 999999964 467899998 899999999999999999888
Q ss_pred CChhHHHHHhccCCe-EEEEEEcCCCC---ccHHHHHHHh-ccCCcceEEEec---CHHHHhhcCCCCCCCCCeEEEeec
Q 015527 168 TTTDEAERILTVESK-LVLGFLHDLEG---MESEELAAAS-KLHSDVNFYQTT---SADVAEFFHIHPKSKRPALIFLHL 239 (405)
Q Consensus 168 ~~~~~~~~~l~~~~~-~~v~f~~~~~~---~~~~~~~~~a-~~~~~~~f~~~~---~~~l~~~~~~~~~~~~p~i~~~~~ 239 (405)
+ .+.+..+.+...+ ++++|...... .....+..+| +.++++.|+.+. ...+.+.++++. ...|+++++..
T Consensus 83 t-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~-~~~P~~vi~~~ 160 (184)
T PF13848_consen 83 T-PENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDE-DDLPALVIFDS 160 (184)
T ss_dssp S-TTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTT-SSSSEEEEEET
T ss_pred c-hhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCC-ccCCEEEEEEC
Confidence 5 5678888888765 45444433221 2444556777 677888888763 447888999874 34799999995
Q ss_pred CCCcc-ccccCCCCHHHHHHHHhc
Q 015527 240 EAGKA-TPFRHQFTRLAIANFVTH 262 (405)
Q Consensus 240 ~~~~~-~~y~g~~~~~~l~~fi~~ 262 (405)
.++.. ..+.+.++.++|.+|++.
T Consensus 161 ~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 161 NKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCCcEEcCCCCCCCHHHHHHHhcC
Confidence 54332 334788999999999963
No 105
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.25 E-value=3.8e-11 Score=96.39 Aligned_cols=88 Identities=28% Similarity=0.395 Sum_probs=71.7
Q ss_pred cChhhHHHHHcCCCcEEEEEecC-CChhHhhhHHHHHHHHHHccC-CcEEEEEeCccc---------------------H
Q 015527 61 LNGKNFSEFMGKNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE---------------------K 117 (405)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~f~a~-~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~~---------------------~ 117 (405)
.+++.+...-.++++++|.||++ ||++|+..+|.+.++++.+++ ++.++.|..+.+ .
T Consensus 16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~ 95 (146)
T PF08534_consen 16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDG 95 (146)
T ss_dssp TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTS
T ss_pred CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHH
Confidence 55555543335789999999999 999999999999999999776 588888876443 4
Q ss_pred hHHHhCCCc---------ccceEEEEe-CCeeeeeecCCCC
Q 015527 118 DLAKEYNIL---------AYPTLYLFV-AGVRQFQFFGERT 148 (405)
Q Consensus 118 ~~~~~~~i~---------~~Pt~~~~~-~g~~~~~~~g~~~ 148 (405)
.+.+.|++. ++|++++++ +|++...+.|...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 96 ALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 567889988 999999998 9988888888765
No 106
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.25 E-value=2.4e-11 Score=93.17 Aligned_cols=69 Identities=25% Similarity=0.339 Sum_probs=52.5
Q ss_pred CCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEe---Cccc-----------------HhHHHhCCCcccceE
Q 015527 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD---AYLE-----------------KDLAKEYNILAYPTL 131 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~---~~~~-----------------~~~~~~~~i~~~Pt~ 131 (405)
++++++|.||++||++|+++.|.++++++.+++++.++.+. .++. .++.+.|++.++|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 47899999999999999999999999998887666666552 1111 234566778888888
Q ss_pred EEEe-CCeee
Q 015527 132 YLFV-AGVRQ 140 (405)
Q Consensus 132 ~~~~-~g~~~ 140 (405)
++++ +|++.
T Consensus 100 ~vid~~G~v~ 109 (114)
T cd02967 100 VLLDEAGVIA 109 (114)
T ss_pred EEECCCCeEE
Confidence 8887 67443
No 107
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.21 E-value=9e-11 Score=88.12 Aligned_cols=96 Identities=36% Similarity=0.446 Sum_probs=77.1
Q ss_pred cccccccCCccEEEEEecC-C-CcHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeC-CC
Q 015527 275 NAQFVFQDPRKQLWLFAPA-Y-GSDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DA 351 (405)
Q Consensus 275 ~~~~~~~~~~~~~i~f~~~-~-~~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~-~~ 351 (405)
++..+...+.|++++|... + .++.+.+.++++|+++++++.|+++|++... ++++.||+.....|++++++. ++
T Consensus 4 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~---~~~~~~~i~~~~~P~~~~~~~~~~ 80 (103)
T cd02982 4 TFFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG---RHLEYFGLKEEDLPVIAIINLSDG 80 (103)
T ss_pred HHhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH---HHHHHcCCChhhCCEEEEEecccc
Confidence 3344444445778877754 4 3899999999999999999999999999754 789999998656899999987 57
Q ss_pred ccccCCC-CCCHHHHHHHHHHHh
Q 015527 352 KKYVLNG-ELTLSSIKSFGEEFL 373 (405)
Q Consensus 352 ~~y~~~~-~~~~~~l~~Fi~~~~ 373 (405)
.+|.+.+ .++.++|.+|+++++
T Consensus 81 ~k~~~~~~~~~~~~l~~fi~~~~ 103 (103)
T cd02982 81 KKYLMPEEELTAESLEEFVEDFL 103 (103)
T ss_pred cccCCCccccCHHHHHHHHHhhC
Confidence 7888765 569999999999874
No 108
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.21 E-value=1.1e-10 Score=94.42 Aligned_cols=100 Identities=14% Similarity=0.140 Sum_probs=74.6
Q ss_pred EcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCc-------c-c---HhHHHh-CCC-
Q 015527 60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY-------L-E---KDLAKE-YNI- 125 (405)
Q Consensus 60 ~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~-------~-~---~~~~~~-~~i- 125 (405)
+++++.+...-..+++++|.|||+||++|+..+|.+.++++++++ ++.++.|+|. + . ...+++ +++
T Consensus 9 ~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~ 88 (153)
T TIGR02540 9 DARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVT 88 (153)
T ss_pred CCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCC
Confidence 344444442223678999999999999999999999999999987 7999999872 1 1 222322 221
Q ss_pred -------------------------cccce----EEEEe-CCeeeeeecCCCCHHHHHHHHHhh
Q 015527 126 -------------------------LAYPT----LYLFV-AGVRQFQFFGERTRDVISAWVREK 159 (405)
Q Consensus 126 -------------------------~~~Pt----~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 159 (405)
.+.|+ .++++ +|++..++.|..+.+.|.+.|++.
T Consensus 89 fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 89 FPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 13786 78886 999999999999999998888764
No 109
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.20 E-value=5.5e-11 Score=95.92 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=64.9
Q ss_pred CCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc-------c----HhHHHh-CC--------------
Q 015527 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLAKE-YN-------------- 124 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~~~~-~~-------------- 124 (405)
.+++++|+|||+||+ |+.++|.++++++++++ ++.++.|+++. . ...+++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 579999999999999 99999999999999976 78999987642 1 123322 22
Q ss_pred ---------Ccccc-----------eEEEEe-CCeeeeeecCCCCHHHHHHH
Q 015527 125 ---------ILAYP-----------TLYLFV-AGVRQFQFFGERTRDVISAW 155 (405)
Q Consensus 125 ---------i~~~P-----------t~~~~~-~g~~~~~~~g~~~~~~l~~~ 155 (405)
+.++| +.++++ +|+++.++.|..+.+++.+.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23456 678886 99999999999998887654
No 110
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.17 E-value=1e-10 Score=80.07 Aligned_cols=57 Identities=21% Similarity=0.326 Sum_probs=51.7
Q ss_pred EEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEE
Q 015527 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYL 133 (405)
Q Consensus 76 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 133 (405)
-++.|+++||++|+.+.+.++++++... ++.+..+|.++++++++++|+.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 4678999999999999999999987653 69999999999999999999999999855
No 111
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.16 E-value=2.9e-10 Score=81.88 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=64.3
Q ss_pred CCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeeeeeecCCCCHHH
Q 015527 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDV 151 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (405)
.+.+-+..|+++||++|....+.++++++.+. ++.+..+|.++.++++++|||.++|++++ +|+... .|..+.++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~--~G~~~~~e 85 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG--FGRMTLEE 85 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE--eCCCCHHH
Confidence 34567888999999999999999999998876 69999999999999999999999999964 785544 47666555
Q ss_pred H
Q 015527 152 I 152 (405)
Q Consensus 152 l 152 (405)
+
T Consensus 86 ~ 86 (89)
T cd03026 86 I 86 (89)
T ss_pred H
Confidence 4
No 112
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.16 E-value=5.8e-10 Score=85.16 Aligned_cols=94 Identities=13% Similarity=0.168 Sum_probs=78.1
Q ss_pred HHHHcCCCcEEEEEecCCChhHhhhHHH-H--HHHHHHccCCcEEEEEeCc--ccHhHHHhCCCcccceEEEEe--CCee
Q 015527 67 SEFMGKNRNVMVMFYANWCYWSKKLAPE-F--AAAAKMLKGEADLVMVDAY--LEKDLAKEYNILAYPTLYLFV--AGVR 139 (405)
Q Consensus 67 ~~~~~~~~~~~v~f~a~~C~~C~~~~~~-~--~~~~~~~~~~v~~~~v~~~--~~~~~~~~~~i~~~Pt~~~~~--~g~~ 139 (405)
.....++++++|+|+++||++|+.+... | .++.+.++.+..+..+|.+ +...+++.|++.++|++++++ +|+.
T Consensus 11 ~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~ 90 (114)
T cd02958 11 QEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEV 90 (114)
T ss_pred HHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcE
Confidence 3444678999999999999999999764 3 4566666667888888876 456789999999999999997 5888
Q ss_pred eeeecCCCCHHHHHHHHHhhh
Q 015527 140 QFQFFGERTRDVISAWVREKM 160 (405)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~~ 160 (405)
+.+..|..+.+.+.+.+++..
T Consensus 91 l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 91 LKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred eEEEcCCCCHHHHHHHHHHHH
Confidence 999999999999999888764
No 113
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=99.14 E-value=6.3e-10 Score=82.43 Aligned_cols=95 Identities=20% Similarity=0.403 Sum_probs=84.5
Q ss_pred cccCChhHHHHHhccCCeEEEEEEcCCCCccHHHHHHHh-ccCCcceEEEecCHHHHhhcCCCCCCCCCeEEEeecCCCc
Q 015527 165 YSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGK 243 (405)
Q Consensus 165 ~~i~~~~~~~~~l~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~~~~~~~~p~i~~~~~~~~~ 243 (405)
..+.+.++++.++...+.++|+|+.+.+++.+..|..+| .++..+.|+.+++..+.++++++ .|++++|++.+..
T Consensus 2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~~~~~----~~~i~l~~~~~~~ 77 (97)
T cd02981 2 KELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDKEVAKKLKVK----PGSVVLFKPFEEE 77 (97)
T ss_pred eecCCHHHHHHHhccCCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEChHHHHHHcCCC----CCceEEeCCcccC
Confidence 467788899999999999999999999999999999999 56679999999999999998887 4999999987677
Q ss_pred cccccCCCCHHHHHHHHhcc
Q 015527 244 ATPFRHQFTRLAIANFVTHT 263 (405)
Q Consensus 244 ~~~y~g~~~~~~l~~fi~~~ 263 (405)
...|+|+++.++|.+||..+
T Consensus 78 ~~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 78 PVEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred CccCCCCCCHHHHHHHHHhC
Confidence 88899999899999999754
No 114
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3.9e-10 Score=90.85 Aligned_cols=90 Identities=20% Similarity=0.231 Sum_probs=77.1
Q ss_pred CCcEEc-ChhhHHHHHcC--CCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcccHhHHHhCCCc-----
Q 015527 56 KDVVSL-NGKNFSEFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNIL----- 126 (405)
Q Consensus 56 ~~~~~l-~~~~~~~~~~~--~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~----- 126 (405)
..+..+ +++.+++.+.. ...|+|.|+|.|.+.|+.+.|.|.+++.+|.. ...|+.||+...++.+++|+|.
T Consensus 124 e~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~s 203 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGS 203 (265)
T ss_pred hheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCccc
Confidence 345566 66777777744 45799999999999999999999999999987 7999999999999999999874
Q ss_pred -ccceEEEEeCCeeeeeecC
Q 015527 127 -AYPTLYLFVAGVRQFQFFG 145 (405)
Q Consensus 127 -~~Pt~~~~~~g~~~~~~~g 145 (405)
..||+++|.+|+++.+..-
T Consensus 204 rQLPT~ilFq~gkE~~RrP~ 223 (265)
T KOG0914|consen 204 RQLPTYILFQKGKEVSRRPD 223 (265)
T ss_pred ccCCeEEEEccchhhhcCcc
Confidence 5899999999988877653
No 115
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.09 E-value=3.9e-10 Score=86.05 Aligned_cols=81 Identities=12% Similarity=0.091 Sum_probs=55.3
Q ss_pred HHHHHcCCCcEEEEEecCCChhHhhhHHHH---HHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEe-CCeeee
Q 015527 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV-AGVRQF 141 (405)
Q Consensus 66 ~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~---~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~ 141 (405)
+.....++++++|.|+++||++|+.+...+ .++.+..+.++..+.++.+....-....+ .++||+++++ +|+++.
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~ 94 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRA 94 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcc
Confidence 344457899999999999999999998864 34455554456555666542211111233 6899999998 887777
Q ss_pred eecCCC
Q 015527 142 QFFGER 147 (405)
Q Consensus 142 ~~~g~~ 147 (405)
+..|..
T Consensus 95 ~i~Gy~ 100 (130)
T cd02960 95 DITGRY 100 (130)
T ss_pred cccccc
Confidence 777653
No 116
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=99.08 E-value=1.6e-09 Score=80.75 Aligned_cols=97 Identities=13% Similarity=0.265 Sum_probs=85.6
Q ss_pred ccccCChhHHHHHhc-cCCeEEEEEEcCCCCccHHHHHHHh-ccCCcceEEEecCHHHHhhcCCCCCCCCCeEEEeecCC
Q 015527 164 TYSITTTDEAERILT-VESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEA 241 (405)
Q Consensus 164 ~~~i~~~~~~~~~l~-~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~~~~~~~~p~i~~~~~~~ 241 (405)
++.+.+.++++.+++ .++..+|+||.+..++.+..|.++| .++.++.|+++.+..+.+.+++. .|.++++++.+
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~~----~~~i~l~~~~~ 77 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDSKVAKKLGLK----MNEVDFYEPFM 77 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcHHHHHHcCCC----CCcEEEeCCCC
Confidence 567888999999999 8999999999998899999999999 56699999999999999999887 49999998766
Q ss_pred Cccccc-cCCCCHHHHHHHHhccC
Q 015527 242 GKATPF-RHQFTRLAIANFVTHTK 264 (405)
Q Consensus 242 ~~~~~y-~g~~~~~~l~~fi~~~~ 264 (405)
+....| .|..+.++|.+||..+.
T Consensus 78 e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 78 EEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCcccCCCCCCHHHHHHHHHHhc
Confidence 677789 78889999999998764
No 117
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.08 E-value=7.7e-10 Score=103.45 Aligned_cols=101 Identities=20% Similarity=0.315 Sum_probs=82.2
Q ss_pred EEcChh-hHHHHHcCCC--cEEEEEecCCChhHhhhHHHHH---HHHHHccCCcEEEEEeCccc----HhHHHhCCCccc
Q 015527 59 VSLNGK-NFSEFMGKNR--NVMVMFYANWCYWSKKLAPEFA---AAAKMLKGEADLVMVDAYLE----KDLAKEYNILAY 128 (405)
Q Consensus 59 ~~l~~~-~~~~~~~~~~--~~~v~f~a~~C~~C~~~~~~~~---~~~~~~~~~v~~~~v~~~~~----~~~~~~~~i~~~ 128 (405)
..++.. .+++.+.+++ +|+|+|||+||..||.+++..- +.+...+ ++...++|.+++ .++.++||+-+.
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 344444 8888887766 9999999999999999988642 2333333 799999999875 467789999999
Q ss_pred ceEEEEe-CCeeeeeecCCCCHHHHHHHHHhhh
Q 015527 129 PTLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (405)
Q Consensus 129 Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (405)
|++++|. +|++.....|.++++.+.+++++..
T Consensus 536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 9999999 8877777999999999999998753
No 118
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=99.07 E-value=1.7e-09 Score=80.81 Aligned_cols=95 Identities=18% Similarity=0.313 Sum_probs=83.0
Q ss_pred ccccCChhHHHHHhccCCeEEEEEEcCCCCccHHHHHHHh-ccCCcceEEEecCHHHHhhcCCCCCCCCCeEEEee----
Q 015527 164 TYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLH---- 238 (405)
Q Consensus 164 ~~~i~~~~~~~~~l~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~~~~~~~~p~i~~~~---- 238 (405)
+..+.+.++++.++...+..+|+||.+..++.++.|..+| .++.++.|+++++..+.+.+++ . |++++|+
T Consensus 2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~-~----~~ivl~~p~~~ 76 (104)
T cd03069 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTSDKQLLEKYGY-G----EGVVLFRPPRL 76 (104)
T ss_pred ccccCCHHHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEChHHHHHhcCC-C----CceEEEechhh
Confidence 4577889999999999999999999998888999999988 5679999999999999999988 4 8899994
Q ss_pred --cCCCccccccCCCCHHHHHHHHhcc
Q 015527 239 --LEAGKATPFRHQFTRLAIANFVTHT 263 (405)
Q Consensus 239 --~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (405)
+.+.....|+|+++.++|.+||..+
T Consensus 77 ~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 77 SNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hcccCcccccccCcCCHHHHHHHHHhh
Confidence 4456677899999999999999875
No 119
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.06 E-value=1.9e-09 Score=88.89 Aligned_cols=92 Identities=20% Similarity=0.285 Sum_probs=73.7
Q ss_pred CCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc-----------------------------cHhHHH
Q 015527 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-----------------------------EKDLAK 121 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~-----------------------------~~~~~~ 121 (405)
.+++++|.||++||+.|...++.+.++++++++ ++.++.|.++. +..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 678999999999999999999999999999975 78899988753 124567
Q ss_pred hCCCcccceEEEEe-CCeeeeee---------cCCCCHHHHHHHHHhhhcCC
Q 015527 122 EYNILAYPTLYLFV-AGVRQFQF---------FGERTRDVISAWVREKMTLG 163 (405)
Q Consensus 122 ~~~i~~~Pt~~~~~-~g~~~~~~---------~g~~~~~~l~~~i~~~~~~~ 163 (405)
.|++...|++++++ +|+++... .+..+.+++.+-|...+...
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence 88999999999998 88766442 12346688888888877544
No 120
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.04 E-value=1.1e-09 Score=91.06 Aligned_cols=103 Identities=12% Similarity=0.135 Sum_probs=73.8
Q ss_pred cEEcChhhHHHHHcCCCcE-EEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc-------c-Hh---H-HHhC
Q 015527 58 VVSLNGKNFSEFMGKNRNV-MVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E-KD---L-AKEY 123 (405)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~-~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~-------~-~~---~-~~~~ 123 (405)
+.+++++.++..-..++++ ++.+||+||++|++++|.++++++++++ ++.++.|+|+. + .+ . .+++
T Consensus 25 l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~ 104 (183)
T PTZ00256 25 AIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKF 104 (183)
T ss_pred eEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhc
Confidence 3445555444222357754 4566999999999999999999999987 69999998741 0 11 1 1121
Q ss_pred ------------------------------------CCcccce---EEEEe-CCeeeeeecCCCCHHHHHHHHHhhh
Q 015527 124 ------------------------------------NILAYPT---LYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (405)
Q Consensus 124 ------------------------------------~i~~~Pt---~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (405)
++.++|+ .++++ +|+++.++.|..+.+.+.+.|.+.+
T Consensus 105 ~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 105 NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 3446784 57776 9999999999999999988888765
No 121
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2e-08 Score=76.81 Aligned_cols=110 Identities=15% Similarity=0.260 Sum_probs=83.6
Q ss_pred HHHcCCCcEEEEEecCCChhHhhhHHHH---HHHHHHccCCcEEEEEeCcc----------------cHhHHHhCCCccc
Q 015527 68 EFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYL----------------EKDLAKEYNILAY 128 (405)
Q Consensus 68 ~~~~~~~~~~v~f~a~~C~~C~~~~~~~---~~~~~~~~~~v~~~~v~~~~----------------~~~~~~~~~i~~~ 128 (405)
++...++..+++|-++.|++|.++...+ .++.+-+.+.+.++.++... ..++++.|+++++
T Consensus 37 si~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182)
T COG2143 37 SISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182)
T ss_pred hcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence 3445688999999999999999998865 45556666678888887642 2589999999999
Q ss_pred ceEEEEe-CCeeeeeecCCCCHHHHHHHHHhhhcCCccccCChhHHHHHh
Q 015527 129 PTLYLFV-AGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERIL 177 (405)
Q Consensus 129 Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~l 177 (405)
|++++|+ +|+.+...+|.+..+++...++-..........+.+++..-+
T Consensus 117 PtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ykd~~~dedf~kk~ 166 (182)
T COG2143 117 PTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADGKYKDTKTDEDFTKKL 166 (182)
T ss_pred ceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 9999998 888899999999999988877655544444444344444433
No 122
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.00 E-value=1.6e-10 Score=94.58 Aligned_cols=101 Identities=20% Similarity=0.381 Sum_probs=92.1
Q ss_pred CcEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcccHhHHHhCCCcccceEEEEe
Q 015527 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (405)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (405)
.++.++.+|....+. .-+++.|+|+||+.|+...|.|...+.--.+ +|.++.||.+.++.+.-+|-+...||++..+
T Consensus 25 ~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvk 102 (248)
T KOG0913|consen 25 KLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVK 102 (248)
T ss_pred eeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEee
Confidence 678899999998874 3599999999999999999999999887666 8999999999999999999999999999999
Q ss_pred CCeeeeeecCCCCHHHHHHHHHhhh
Q 015527 136 AGVRQFQFFGERTRDVISAWVREKM 160 (405)
Q Consensus 136 ~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (405)
+| +-.+|.|.++..++.+|+...-
T Consensus 103 DG-eFrrysgaRdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 103 DG-EFRRYSGARDKNDFISFEEHRE 126 (248)
T ss_pred cc-ccccccCcccchhHHHHHHhhh
Confidence 99 8999999999999999987554
No 123
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.00 E-value=2.7e-09 Score=84.94 Aligned_cols=85 Identities=18% Similarity=0.186 Sum_probs=69.7
Q ss_pred CCCcEEEEEe-cCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc---------------------cHhHHHhCCCccc
Q 015527 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------EKDLAKEYNILAY 128 (405)
Q Consensus 72 ~~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~---------------------~~~~~~~~~i~~~ 128 (405)
.+++++|.|| +.||+.|....+.+.++++++++ ++.++.|..+. +..+++.||+...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 4789999999 58999999999999999998875 67787776543 3456778898888
Q ss_pred ---------ceEEEEe-CCeeeeeecCCCCHHHHHHHH
Q 015527 129 ---------PTLYLFV-AGVRQFQFFGERTRDVISAWV 156 (405)
Q Consensus 129 ---------Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i 156 (405)
|++++++ +|++...+.|....+.+.+.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 8999998 899999999988777766543
No 124
>smart00594 UAS UAS domain.
Probab=98.98 E-value=8.4e-09 Score=79.58 Aligned_cols=89 Identities=11% Similarity=0.090 Sum_probs=70.9
Q ss_pred HHHcCCCcEEEEEecCCChhHhhhHHHH---HHHHHHccCCcEEEEEeCc--ccHhHHHhCCCcccceEEEEe-CC----
Q 015527 68 EFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAY--LEKDLAKEYNILAYPTLYLFV-AG---- 137 (405)
Q Consensus 68 ~~~~~~~~~~v~f~a~~C~~C~~~~~~~---~~~~~~~~~~v~~~~v~~~--~~~~~~~~~~i~~~Pt~~~~~-~g---- 137 (405)
....++|+++|+|+++||++|+.+.... .++.+.++.++.+..+|.+ +...++..|++.++|++.++. +|
T Consensus 22 ~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~ 101 (122)
T smart00594 22 EASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRV 101 (122)
T ss_pred HHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCcee
Confidence 3446788999999999999999987753 4555666657888777765 346789999999999999997 54
Q ss_pred -eeeeeecCCCCHHHHHHHH
Q 015527 138 -VRQFQFFGERTRDVISAWV 156 (405)
Q Consensus 138 -~~~~~~~g~~~~~~l~~~i 156 (405)
+.+.+..|..+.+++...+
T Consensus 102 ~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 102 IEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEeccccCCCCHHHHHHhh
Confidence 2466888999999998765
No 125
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.93 E-value=3e-09 Score=75.84 Aligned_cols=69 Identities=30% Similarity=0.391 Sum_probs=53.3
Q ss_pred HHHHHcCCCcEEEEEecCCChhHhhhHHHH---HHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEe
Q 015527 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (405)
Q Consensus 66 ~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~---~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (405)
+.....++++++|.|+++||++|+.+...+ .++.+.+.+++.++.||.++.....+..+ .++|++++++
T Consensus 10 l~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 10 LAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 444557899999999999999999999877 45555455689999999987655432222 6699999986
No 126
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=98.89 E-value=2e-08 Score=75.17 Aligned_cols=97 Identities=13% Similarity=0.218 Sum_probs=82.5
Q ss_pred CccccCChhHHHHHhccC-CeEEEEEEcCCCCccHHHHHHHh-ccCCcceEEEecCHHHHhhcCCCCCCCCCeEEEee--
Q 015527 163 GTYSITTTDEAERILTVE-SKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLH-- 238 (405)
Q Consensus 163 ~~~~i~~~~~~~~~l~~~-~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~~~~~~~~p~i~~~~-- 238 (405)
+++.+.+.++++.++... +..+|+||.+..++.+..|..+| .++.++.|+++++..+...+++. .|.+++|+
T Consensus 1 ~v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~~~~~~~~~~~~----~~~vvl~rp~ 76 (107)
T cd03068 1 PSKQLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTFDSEIFKSLKVS----PGQLVVFQPE 76 (107)
T ss_pred CceEcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEChHHHHHhcCCC----CCceEEECcH
Confidence 356788999999999887 89999999888888999999988 67799999999999999999887 48899994
Q ss_pred ----cCCCccccccCC-CCHHH-HHHHHhcc
Q 015527 239 ----LEAGKATPFRHQ-FTRLA-IANFVTHT 263 (405)
Q Consensus 239 ----~~~~~~~~y~g~-~~~~~-l~~fi~~~ 263 (405)
+.+.....|+|. .+.++ |..||..|
T Consensus 77 ~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 77 KFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 556678899988 77755 99999865
No 127
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.87 E-value=2.2e-08 Score=81.97 Aligned_cols=84 Identities=12% Similarity=0.166 Sum_probs=64.9
Q ss_pred CCCcEEEEEecCC-ChhHhhhHHHHHHHHHHccCCcEEEEEeCcc-----------------------cHhHHHhCCCcc
Q 015527 72 KNRNVMVMFYANW-CYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-----------------------EKDLAKEYNILA 127 (405)
Q Consensus 72 ~~~~~~v~f~a~~-C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~-----------------------~~~~~~~~~i~~ 127 (405)
.+++++|+||++| |++|..++|.++++++++. ++.++.|+++. ...+++.||+..
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~ 121 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI 121 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence 5789999999999 9999999999999999985 67788777642 236778889887
Q ss_pred cc---------eEEEEe-CCeeeeeecC-----CCCHHHHHHHH
Q 015527 128 YP---------TLYLFV-AGVRQFQFFG-----ERTRDVISAWV 156 (405)
Q Consensus 128 ~P---------t~~~~~-~g~~~~~~~g-----~~~~~~l~~~i 156 (405)
.| ++++++ +|++...+.+ ..+.+++.+.+
T Consensus 122 ~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l 165 (167)
T PRK00522 122 AEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAAL 165 (167)
T ss_pred cccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHh
Confidence 77 889997 8977776643 23455555554
No 128
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.85 E-value=7.9e-09 Score=80.37 Aligned_cols=70 Identities=24% Similarity=0.533 Sum_probs=59.9
Q ss_pred CCCcEEEEEecC-CChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc---------------------cHhHHHhCCCc--
Q 015527 72 KNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------EKDLAKEYNIL-- 126 (405)
Q Consensus 72 ~~~~~~v~f~a~-~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~---------------------~~~~~~~~~i~-- 126 (405)
.+++++|.||++ ||++|+...+.+.++.++++. ++.++.|..+. +..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 679999999999 999999999999999999987 78888888654 34567888998
Q ss_pred ----ccceEEEEe-CCeeee
Q 015527 127 ----AYPTLYLFV-AGVRQF 141 (405)
Q Consensus 127 ----~~Pt~~~~~-~g~~~~ 141 (405)
.+|++++++ +|++.+
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 999999998 775543
No 129
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.84 E-value=3e-08 Score=73.92 Aligned_cols=98 Identities=16% Similarity=0.200 Sum_probs=79.7
Q ss_pred CCccccccccccccccCCccEEE-EEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcE
Q 015527 266 PLVVTLTIHNAQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRV 343 (405)
Q Consensus 266 p~v~~l~~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~ 343 (405)
|.+..++..++......+.++++ +|++|+. |+.+.+.+.++|+++++++.|+.+|++... .+++.+++.. .|.
T Consensus 1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~---~~~~~~~v~~--~Pt 75 (101)
T cd03003 1 PEIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR---MLCRSQGVNS--YPS 75 (101)
T ss_pred CCeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH---HHHHHcCCCc--cCE
Confidence 34667888888887766665544 6667877 999999999999999999999999999854 8899999964 788
Q ss_pred EEEEeCCCccccCCCCCCHHHHHHH
Q 015527 344 IAYSARDAKKYVLNGELTLSSIKSF 368 (405)
Q Consensus 344 i~i~~~~~~~y~~~~~~~~~~l~~F 368 (405)
++++..+.....+.|..+.+.|.+|
T Consensus 76 ~~~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 76 LYVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EEEEcCCCCcccCCCCCCHHHHHhh
Confidence 8888654445668899999999887
No 130
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.83 E-value=3.2e-08 Score=81.69 Aligned_cols=88 Identities=17% Similarity=0.299 Sum_probs=68.8
Q ss_pred CCCcEEEEEe-cCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCccc----------------------------HhHHH
Q 015527 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE----------------------------KDLAK 121 (405)
Q Consensus 72 ~~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~~----------------------------~~~~~ 121 (405)
.+++++|.|| ++||++|....+.+.++++++.+ ++.++.|.++.. ..+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 5689999999 89999999999999999999976 677777766432 23456
Q ss_pred hCCCc------ccceEEEEe-CCeeeeeecC----CCCHHHHHHHHHhh
Q 015527 122 EYNIL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK 159 (405)
Q Consensus 122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~ 159 (405)
.|++. ..|++++++ +|++...+.+ ..+.+++.+.|+.+
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 67775 578999998 8988887744 34667788777654
No 131
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.80 E-value=3.5e-08 Score=73.86 Aligned_cols=99 Identities=19% Similarity=0.268 Sum_probs=81.6
Q ss_pred ccccccccccccccC-CccEEE-EEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEE
Q 015527 268 VVTLTIHNAQFVFQD-PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVI 344 (405)
Q Consensus 268 v~~l~~~~~~~~~~~-~~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i 344 (405)
|..+|.++|...... ..+.++ ++.++|. |+.+.+.|.++++++.+++.|+.+|++... .+++.+++.. .|.+
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~--~Pt~ 75 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK---ELCKKYGVKS--VPTI 75 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH---HHHHHTTCSS--SSEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccc---hhhhccCCCC--CCEE
Confidence 356788888888877 555555 5556676 999999999999999999999999999754 8999999975 7898
Q ss_pred EEEeCCCccccCCCCCCHHHHHHHHHH
Q 015527 345 AYSARDAKKYVLNGELTLSSIKSFGEE 371 (405)
Q Consensus 345 ~i~~~~~~~y~~~~~~~~~~l~~Fi~~ 371 (405)
++++.+.....+.|..+.++|.+||++
T Consensus 76 ~~~~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 76 IFFKNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp EEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred EEEECCcEEEEEECCCCHHHHHHHHHc
Confidence 888865555578888999999999986
No 132
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.80 E-value=2.8e-08 Score=74.57 Aligned_cols=99 Identities=24% Similarity=0.258 Sum_probs=79.5
Q ss_pred CCccccccccccccccCC-ccEEE-EEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCc
Q 015527 266 PLVVTLTIHNAQFVFQDP-RKQLW-LFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPR 342 (405)
Q Consensus 266 p~v~~l~~~~~~~~~~~~-~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p 342 (405)
|.+.+++..++....... .++++ +|++||. |+.+.+.|+++|+++.+.+.|+.+|++... .+++.+|+.. .|
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~i~~--~P 75 (104)
T cd03004 1 PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYE---SLCQQANIRA--YP 75 (104)
T ss_pred CcceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH---HHHHHcCCCc--cc
Confidence 446678888888765443 35555 6677777 999999999999999989999999999754 8899999965 78
Q ss_pred EEEEEeCC-CccccCCCCCC-HHHHHHHH
Q 015527 343 VIAYSARD-AKKYVLNGELT-LSSIKSFG 369 (405)
Q Consensus 343 ~i~i~~~~-~~~y~~~~~~~-~~~l~~Fi 369 (405)
.++++..+ ...+.+.|..+ .++|.+||
T Consensus 76 t~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 76 TIRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 88888775 66677888776 89998885
No 133
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.79 E-value=6.6e-08 Score=80.67 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=66.8
Q ss_pred CCCcEEEEEe-cCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc-------------------------cHhHHHhCC
Q 015527 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------------EKDLAKEYN 124 (405)
Q Consensus 72 ~~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~-------------------------~~~~~~~~~ 124 (405)
.+++++|.|| ++||++|..+++.+.++.+++++ ++.++.|.++. +..+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5789999999 99999999999999999999865 67777776543 235677888
Q ss_pred Cc------ccceEEEEe-CCeeeeeecC----CCCHHHHHHHHH
Q 015527 125 IL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVR 157 (405)
Q Consensus 125 i~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~ 157 (405)
+. +.|++++++ +|++...+.+ .++.+++.+.|+
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 86 469999997 8977766532 346777777664
No 134
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=98.79 E-value=6.6e-08 Score=68.73 Aligned_cols=107 Identities=16% Similarity=0.176 Sum_probs=86.3
Q ss_pred CCccccccccccccccCCc--cEEEEEecCCC--cHHHHHHHHHHHHHhcC--cEEEEEEEcCCcch-hhhhhhhcCCCC
Q 015527 266 PLVVTLTIHNAQFVFQDPR--KQLWLFAPAYG--SDKVILTFEEVAKALKG--KLLHVYVEMNSEGV-GRRVSQEFGVSG 338 (405)
Q Consensus 266 p~v~~l~~~~~~~~~~~~~--~~~i~f~~~~~--~~~~~~~~~~va~~~~~--~~~f~~id~~~~~~-~~~~~~~~gi~~ 338 (405)
|.+++++.+++.++..... .+++.|+...+ -.+++..++++|+++.+ ++.|+|+|.+++++ ...+.+.|||+-
T Consensus 1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl 80 (120)
T cd03074 1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDL 80 (120)
T ss_pred CchhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCccc
Confidence 5677888888888887665 67788887655 45899999999999874 69999999999843 567778999987
Q ss_pred CCCcEEEEEeC---CCccccCCCC---CCHHHHHHHHHHHh
Q 015527 339 NAPRVIAYSAR---DAKKYVLNGE---LTLSSIKSFGEEFL 373 (405)
Q Consensus 339 ~~~p~i~i~~~---~~~~y~~~~~---~~~~~l~~Fi~~~~ 373 (405)
+ .|.|.+.+. .+.++.++++ .+.++|+.||++++
T Consensus 81 ~-~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 81 F-RPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred C-CCceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 5 688888877 5667778653 88999999999985
No 135
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.78 E-value=5.9e-08 Score=78.53 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=68.5
Q ss_pred cEEcChhhHHHHHcCCCcEEEEEecC-CChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc--------------------
Q 015527 58 VVSLNGKNFSEFMGKNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------- 115 (405)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~~v~f~a~-~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~-------------------- 115 (405)
+..++++.+...-..+++++|.||++ ||+.|....+.+.++++.+++ ++.++.|+.+.
T Consensus 15 l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D 94 (154)
T PRK09437 15 LPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSD 94 (154)
T ss_pred eeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEEC
Confidence 34445544442223678999999986 688899999999999999876 68888887643
Q ss_pred -cHhHHHhCCCccc------------ceEEEEe-CCeeeeeecCCCCHHH
Q 015527 116 -EKDLAKEYNILAY------------PTLYLFV-AGVRQFQFFGERTRDV 151 (405)
Q Consensus 116 -~~~~~~~~~i~~~------------Pt~~~~~-~g~~~~~~~g~~~~~~ 151 (405)
...+.+.||+... |++++++ +|++...|.|....+.
T Consensus 95 ~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~ 144 (154)
T PRK09437 95 EDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNH 144 (154)
T ss_pred CCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchh
Confidence 2345677887654 6778887 9988899998655444
No 136
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.77 E-value=5e-08 Score=74.14 Aligned_cols=100 Identities=15% Similarity=0.200 Sum_probs=83.1
Q ss_pred ccccccccccccccCCc-cEEEEEecCCC----cH--HHHHHHHHHHHHh--cCcEEEEEEEcCCcchhhhhhhhcCCCC
Q 015527 268 VVTLTIHNAQFVFQDPR-KQLWLFAPAYG----SD--KVILTFEEVAKAL--KGKLLHVYVEMNSEGVGRRVSQEFGVSG 338 (405)
Q Consensus 268 v~~l~~~~~~~~~~~~~-~~~i~f~~~~~----~~--~~~~~~~~va~~~--~~~~~f~~id~~~~~~~~~~~~~~gi~~ 338 (405)
+..+|..||........ +++++|.+++. |+ ...+.+.++|.++ .+++.|+.+|++... ++++.||+..
T Consensus 11 v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~---~La~~~~I~~ 87 (120)
T cd03065 11 VIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA---KVAKKLGLDE 87 (120)
T ss_pred eeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH---HHHHHcCCcc
Confidence 66788899987666665 88888988865 77 6777889999999 788999999999855 9999999975
Q ss_pred CCCcEEEEEeCCCccccCCCCCCHHHHHHHHHHHh
Q 015527 339 NAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFL 373 (405)
Q Consensus 339 ~~~p~i~i~~~~~~~y~~~~~~~~~~l~~Fi~~~~ 373 (405)
.|+++++.. |+...+.|..+.+.|.+||+++.
T Consensus 88 --iPTl~lfk~-G~~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 88 --EDSIYVFKD-DEVIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred --ccEEEEEEC-CEEEEeeCCCCHHHHHHHHHHHh
Confidence 789888874 44455889999999999999875
No 137
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.76 E-value=4.8e-08 Score=78.00 Aligned_cols=74 Identities=12% Similarity=0.196 Sum_probs=59.9
Q ss_pred CCCcEEEEEecCC-ChhHhhhHHHHHHHHHHccCCcEEEEEeCccc-----------------------HhHHHhCCCcc
Q 015527 72 KNRNVMVMFYANW-CYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-----------------------KDLAKEYNILA 127 (405)
Q Consensus 72 ~~~~~~v~f~a~~-C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~-----------------------~~~~~~~~i~~ 127 (405)
.+++++|.||++| |++|+..+|.+.+++++++ ++.++.|+.+.. ..+++.||+..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 5789999999998 6999999999999999986 688888876421 35667788753
Q ss_pred ------cceEEEEe-CCeeeeeecCC
Q 015527 128 ------YPTLYLFV-AGVRQFQFFGE 146 (405)
Q Consensus 128 ------~Pt~~~~~-~g~~~~~~~g~ 146 (405)
.|++++++ +|++...+.|.
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~ 129 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVP 129 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECC
Confidence 68999998 89887777653
No 138
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.76 E-value=3.4e-07 Score=78.15 Aligned_cols=194 Identities=14% Similarity=0.148 Sum_probs=131.8
Q ss_pred hhHHHHHhccCCeEEEEEEcCCCCc---cHHHHHHHh-ccC-----CcceEEEe---cCHHHHhhcCCCCCCCCCeEEEe
Q 015527 170 TDEAERILTVESKLVLGFLHDLEGM---ESEELAAAS-KLH-----SDVNFYQT---TSADVAEFFHIHPKSKRPALIFL 237 (405)
Q Consensus 170 ~~~~~~~l~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~-----~~~~f~~~---~~~~l~~~~~~~~~~~~p~i~~~ 237 (405)
.+.++..++....++|.||++||.- +.+.|.++| ++. +++.++.+ ....++++|.++ +||++-++
T Consensus 3 ~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~---KyPTlKvf 79 (375)
T KOG0912|consen 3 SENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHIN---KYPTLKVF 79 (375)
T ss_pred cccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccc---cCceeeee
Confidence 3566778888999999999999965 777888877 322 45556665 566799999998 59999999
Q ss_pred ecCCCccccccCCCCHHHHHHHHhccCCCCccccccc-cccccccCCccEEEEEecCCCcHHHHHHHHHHHHHhcCcEEE
Q 015527 238 HLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIH-NAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKLLH 316 (405)
Q Consensus 238 ~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~-~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~va~~~~~~~~f 316 (405)
+.+.--.-.|.|.++.+.|.+||++...-.+.++... .++.+....+-.+|.|....+...+ +.++++|.-++++..|
T Consensus 80 rnG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey-~~~~kva~~lr~dc~f 158 (375)
T KOG0912|consen 80 RNGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEY-DNLRKVASLLRDDCVF 158 (375)
T ss_pred eccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchH-HHHHHHHHHHhhccEE
Confidence 9987556689999999999999998766556665532 3334444344567777765554444 5788999999998877
Q ss_pred EEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeC-CCcc-ccCCCC-CCHHHHHHHHHHHhcCce
Q 015527 317 VYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKK-YVLNGE-LTLSSIKSFGEEFLEDKL 377 (405)
Q Consensus 317 ~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~-~~~~-y~~~~~-~~~~~l~~Fi~~~~~Gkl 377 (405)
...-++.. . ...+...+ +.+++. .... -.|.|. -+.+.+.+||++=--+-+
T Consensus 159 ~V~~gD~~-------~--~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLV 212 (375)
T KOG0912|consen 159 LVGFGDLL-------K--PHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLV 212 (375)
T ss_pred Eeeccccc-------c--CCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhh
Confidence 76544421 0 11121223 334444 1111 146674 456889999998544433
No 139
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.76 E-value=5.8e-08 Score=78.14 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=34.6
Q ss_pred CCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc
Q 015527 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL 115 (405)
Q Consensus 73 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~ 115 (405)
+..+++.||++||++|+..+|.+.++++++.+ ++.++.|+.+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 33445555699999999999999999999865 68888887654
No 140
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.76 E-value=4.1e-08 Score=75.54 Aligned_cols=82 Identities=28% Similarity=0.489 Sum_probs=68.5
Q ss_pred CCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCc-ccHhHHHhCC--CcccceEEEEeCCeeeeeecC--CC
Q 015527 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-LEKDLAKEYN--ILAYPTLYLFVAGVRQFQFFG--ER 147 (405)
Q Consensus 73 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~-~~~~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g--~~ 147 (405)
++++++.||++||++|+.++|.+.++++.+...+.+..+|.. ..+.+...++ +..+|++.++.+|.......| ..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 789999999999999999999999999999877899999997 7889999999 999999998888855545555 34
Q ss_pred CHHHHHH
Q 015527 148 TRDVISA 154 (405)
Q Consensus 148 ~~~~l~~ 154 (405)
....+..
T Consensus 112 ~~~~~~~ 118 (127)
T COG0526 112 PKEALID 118 (127)
T ss_pred CHHHHHH
Confidence 4444443
No 141
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.71 E-value=9.5e-08 Score=66.60 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=53.7
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHh----HHHhCCCcccceEEEEeCCeeeeeecCCCCHHHH
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVI 152 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l 152 (405)
+..|+++||++|+...+.+.+ .++.+..+|+++++. +++.+++.++|++++. |+. ..| .+.+.|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g-~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVG-FDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---Eee-CCHHHH
Confidence 567999999999999888765 258888999987654 4567999999999874 633 555 577888
Q ss_pred HHHHH
Q 015527 153 SAWVR 157 (405)
Q Consensus 153 ~~~i~ 157 (405)
.++|+
T Consensus 70 ~~~i~ 74 (74)
T TIGR02196 70 DQLLE 74 (74)
T ss_pred HHHhC
Confidence 88763
No 142
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.70 E-value=2.1e-07 Score=69.81 Aligned_cols=95 Identities=12% Similarity=0.173 Sum_probs=73.6
Q ss_pred ccCChhHHHHHhccCCeEEEEEEc--CCCCccHHHHHHHh-cc---CCcceEEEecC--------HHHHhhcCCCCCCCC
Q 015527 166 SITTTDEAERILTVESKLVLGFLH--DLEGMESEELAAAS-KL---HSDVNFYQTTS--------ADVAEFFHIHPKSKR 231 (405)
Q Consensus 166 ~i~~~~~~~~~l~~~~~~~v~f~~--~~~~~~~~~~~~~a-~~---~~~~~f~~~~~--------~~l~~~~~~~~~~~~ 231 (405)
.+ +...++.++++++.++|-|++ +||+. .+.+..+| .+ ...+.++.+.- .+++++|+|+. .++
T Consensus 5 ~L-~~~nF~~~v~~~~~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~-~gy 81 (116)
T cd03007 5 DL-DTVTFYKVIPKFKYSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDK-ESY 81 (116)
T ss_pred EC-ChhhHHHHHhcCCcEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCc-CCC
Confidence 44 567888999999999999999 99995 35566555 22 33577776543 67999999971 139
Q ss_pred CeEEEeecCC-CccccccCC-CCHHHHHHHHhcc
Q 015527 232 PALIFLHLEA-GKATPFRHQ-FTRLAIANFVTHT 263 (405)
Q Consensus 232 p~i~~~~~~~-~~~~~y~g~-~~~~~l~~fi~~~ 263 (405)
|+|.+|+.++ ..+..|+|. ++.++|.+|+.++
T Consensus 82 PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 82 PVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9999999873 356899996 9999999999875
No 143
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.69 E-value=4e-08 Score=76.48 Aligned_cols=69 Identities=22% Similarity=0.441 Sum_probs=56.2
Q ss_pred CCCcEEEEEecCCChhHhhhHHHHHHHHHHccCC---cEEEEEeCccc-------------------------HhHHHhC
Q 015527 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGE---ADLVMVDAYLE-------------------------KDLAKEY 123 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~---v~~~~v~~~~~-------------------------~~~~~~~ 123 (405)
.|+++.++|-|.||++|+++.|.+.++++..+++ +.++-|+.|.+ .+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 5799999999999999999999999999988774 55555544332 3578899
Q ss_pred CCcccceEEEEe-CCeee
Q 015527 124 NILAYPTLYLFV-AGVRQ 140 (405)
Q Consensus 124 ~i~~~Pt~~~~~-~g~~~ 140 (405)
+|.++|++.+.. +|..+
T Consensus 112 ~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVV 129 (157)
T ss_pred ccCcCceeEEecCCCCEe
Confidence 999999999998 88544
No 144
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.69 E-value=1.3e-07 Score=71.35 Aligned_cols=99 Identities=17% Similarity=0.147 Sum_probs=78.8
Q ss_pred CCcccccccccccc---ccCCc-cEEEEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhh-hhcCCCCC
Q 015527 266 PLVVTLTIHNAQFV---FQDPR-KQLWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVS-QEFGVSGN 339 (405)
Q Consensus 266 p~v~~l~~~~~~~~---~~~~~-~~~i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~-~~~gi~~~ 339 (405)
+.+.+++..||.+. ..... -++.+|++||. |+.+.+.+.++|+++++++.|+.+|++... .++ +.+++..
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~---~l~~~~~~I~~- 84 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ---GKCRKQKHFFY- 84 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh---HHHHHhcCCcc-
Confidence 44778899998875 34444 45557788988 999999999999999999999999999754 677 5899865
Q ss_pred CCcEEEEEeCCCccccCCCCCCHHHHHHHH
Q 015527 340 APRVIAYSARDAKKYVLNGELTLSSIKSFG 369 (405)
Q Consensus 340 ~~p~i~i~~~~~~~y~~~~~~~~~~l~~Fi 369 (405)
.|.+.++..+.....+.|..+.+.|..|+
T Consensus 85 -~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 85 -FPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred -cCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 68888887655566788999999998873
No 145
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.68 E-value=1.5e-07 Score=75.79 Aligned_cols=74 Identities=11% Similarity=0.314 Sum_probs=58.4
Q ss_pred CcEEEEEe-cCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc---------------------c--HhHHHhCCCcc-
Q 015527 74 RNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------E--KDLAKEYNILA- 127 (405)
Q Consensus 74 ~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~---------------------~--~~~~~~~~i~~- 127 (405)
++++|.|| ++||+.|....|.++++++++++ ++.++.|+.+. . ..+.+.|++..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 78888887 99999999999999999999975 68888776532 2 45677788873
Q ss_pred ---c--ceEEEEe-CCeeeeeecCCC
Q 015527 128 ---Y--PTLYLFV-AGVRQFQFFGER 147 (405)
Q Consensus 128 ---~--Pt~~~~~-~g~~~~~~~g~~ 147 (405)
. |++++++ +|++...+.|..
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCC
Confidence 2 3888887 898888888753
No 146
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.67 E-value=1.5e-06 Score=75.85 Aligned_cols=210 Identities=14% Similarity=0.162 Sum_probs=132.7
Q ss_pred ccccCChhHHHHHhccCCeEEEEEEcCCCCc--------cHHHHHHHh-cc--CCcceEEEe---cCHHHHhhcCCCCCC
Q 015527 164 TYSITTTDEAERILTVESKLVLGFLHDLEGM--------ESEELAAAS-KL--HSDVNFYQT---TSADVAEFFHIHPKS 229 (405)
Q Consensus 164 ~~~i~~~~~~~~~l~~~~~~~v~f~~~~~~~--------~~~~~~~~a-~~--~~~~~f~~~---~~~~l~~~~~~~~~~ 229 (405)
+..+ +...+.+.+++.+..++.|+.+..+. ..+.+.+++ +. ...+.|+.+ .+..+++++|+..
T Consensus 36 Vi~L-neKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E-- 112 (383)
T PF01216_consen 36 VIDL-NEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE-- 112 (383)
T ss_dssp CEEE--TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S--
T ss_pred eEEc-chhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc--
Confidence 4455 56788889999999999888775543 113244433 43 567788876 6778999999996
Q ss_pred CCCeEEEeecCCCccccccCCCCHHHHHHHHhccCCCCccccccccccccccC-C-ccEEEEEecCCCcHHHHHHHHHHH
Q 015527 230 KRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQD-P-RKQLWLFAPAYGSDKVILTFEEVA 307 (405)
Q Consensus 230 ~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~-~-~~~~i~f~~~~~~~~~~~~~~~va 307 (405)
.++|.+|+.+ ..+.|.|.++.+-|..||..-....|..++...-.+.+.. . .+.++-|....++. ....|.+.|
T Consensus 113 -~~SiyVfkd~--~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~-~yk~FeeAA 188 (383)
T PF01216_consen 113 -EGSIYVFKDG--EVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSE-HYKEFEEAA 188 (383)
T ss_dssp -TTEEEEEETT--EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSH-HHHHHHHHH
T ss_pred -cCcEEEEECC--cEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcH-HHHHHHHHH
Confidence 8999999965 7899999999999999999877666766665543333332 2 25666666555444 667899999
Q ss_pred HHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeC-CCccccC-CCCCCHHHHHHHHHHHhcCce-eeecccC
Q 015527 308 KALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYVL-NGELTLSSIKSFGEEFLEDKL-LNQSDQI 384 (405)
Q Consensus 308 ~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~-~~~~y~~-~~~~~~~~l~~Fi~~~~~Gkl-~~kse~i 384 (405)
..|..-+.|.-+ |.+.+++.+|+.-. -+-++.+ -...... ....+.++|.+||++...--+ ..+.+..
T Consensus 189 e~F~p~IkFfAt------fd~~vAk~L~lK~n---ev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m 259 (383)
T PF01216_consen 189 EHFQPYIKFFAT------FDKKVAKKLGLKLN---EVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDM 259 (383)
T ss_dssp HHCTTTSEEEEE-------SHHHHHHHT-STT----EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGGH
T ss_pred HhhcCceeEEEE------ecchhhhhcCcccc---ceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhhh
Confidence 999999988876 34588899999632 3445544 3333333 346788999999999888877 6666655
Q ss_pred chhhh
Q 015527 385 SETIL 389 (405)
Q Consensus 385 Pe~~~ 389 (405)
-+.|.
T Consensus 260 ~e~We 264 (383)
T PF01216_consen 260 FETWE 264 (383)
T ss_dssp HHHHH
T ss_pred hhhhc
Confidence 55554
No 147
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.66 E-value=1.5e-07 Score=70.41 Aligned_cols=97 Identities=26% Similarity=0.256 Sum_probs=77.0
Q ss_pred ccccccccccccccCCc-cEE-EEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEE
Q 015527 268 VVTLTIHNAQFVFQDPR-KQL-WLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVI 344 (405)
Q Consensus 268 v~~l~~~~~~~~~~~~~-~~~-i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i 344 (405)
+.+++..++........ +++ .++.++|. |..+.+.|.++|+++.+++.|+.+|++... .+++.+|+.. .|.+
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~~~~~~~i~~--~P~~ 76 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ---SLAQQYGVRG--FPTI 76 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH---HHHHHCCCCc--cCEE
Confidence 34667777777655444 444 45666776 899999999999999999999999999754 8899999964 7888
Q ss_pred EEEeCC-CccccCCCCCCHHHHHHHH
Q 015527 345 AYSARD-AKKYVLNGELTLSSIKSFG 369 (405)
Q Consensus 345 ~i~~~~-~~~y~~~~~~~~~~l~~Fi 369 (405)
++++.+ ...+.+.|..+.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 77 KVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EEECCCCcceeecCCCCCHHHHHHHh
Confidence 888763 4567789999999999996
No 148
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.66 E-value=1.5e-07 Score=71.32 Aligned_cols=100 Identities=21% Similarity=0.275 Sum_probs=79.0
Q ss_pred ccccccccccccccCCc-cE-EEEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEE
Q 015527 268 VVTLTIHNAQFVFQDPR-KQ-LWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVI 344 (405)
Q Consensus 268 v~~l~~~~~~~~~~~~~-~~-~i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i 344 (405)
+.+++..++........ +. +.++++||. |+.+.+.+.++|+++.+++.|+.+|++... +..+++.|++.. .|.+
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~-~~~~~~~~~i~~--~Pt~ 78 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK-NKPLCGKYGVQG--FPTL 78 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc-cHHHHHHcCCCc--CCEE
Confidence 45678888887665444 44 446667777 999999999999999999999999999743 447889999975 7899
Q ss_pred EEEeCCC-----ccccCCCCCCHHHHHHHHH
Q 015527 345 AYSARDA-----KKYVLNGELTLSSIKSFGE 370 (405)
Q Consensus 345 ~i~~~~~-----~~y~~~~~~~~~~l~~Fi~ 370 (405)
++++.++ ..+.+.|..+.++|.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 79 KVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 8888743 3466889999999999984
No 149
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.65 E-value=3e-07 Score=76.19 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=68.7
Q ss_pred CCCcEEEEEe-cCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc-------------------------cHhHHHhCC
Q 015527 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------------EKDLAKEYN 124 (405)
Q Consensus 72 ~~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~-------------------------~~~~~~~~~ 124 (405)
.++++++.|| ++||+.|..+++.|.+.++++.+ ++.++.|..+. +..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 5679999999 99999999999999999999865 67777776543 346788899
Q ss_pred C----ccc--ceEEEEe-CCeeeeeec----CCCCHHHHHHHHHhh
Q 015527 125 I----LAY--PTLYLFV-AGVRQFQFF----GERTRDVISAWVREK 159 (405)
Q Consensus 125 i----~~~--Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~~ 159 (405)
+ .+. |++++++ +|++...+. ..++.+++.+.|...
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 8 355 9999998 897665543 346788888877543
No 150
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.65 E-value=2.9e-07 Score=77.70 Aligned_cols=89 Identities=18% Similarity=0.223 Sum_probs=68.2
Q ss_pred CCCcEEE-EEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc---------------------------cHhHHHh
Q 015527 72 KNRNVMV-MFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE 122 (405)
Q Consensus 72 ~~~~~~v-~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~---------------------------~~~~~~~ 122 (405)
.++.++| .||++||+.|..+++.+.++++++++ ++.++.|+++. +..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 4665554 68999999999999999999999875 67777776542 2356778
Q ss_pred CCCc------ccceEEEEe-CCeeeeee----cCCCCHHHHHHHHHhhh
Q 015527 123 YNIL------AYPTLYLFV-AGVRQFQF----FGERTRDVISAWVREKM 160 (405)
Q Consensus 123 ~~i~------~~Pt~~~~~-~g~~~~~~----~g~~~~~~l~~~i~~~~ 160 (405)
||+. +.|++++++ +|++.... .+.++.+++.+.|+.+.
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 8874 589999998 88666544 45679999988887654
No 151
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.64 E-value=1e-06 Score=74.99 Aligned_cols=176 Identities=14% Similarity=0.125 Sum_probs=118.6
Q ss_pred cCCeEEEEEEcCCCCc---cHHHHHHHh-cc---CCcceEE---EecCHHHHhhcCCCCCCCCCeEEEeecCCCcccccc
Q 015527 179 VESKLVLGFLHDLEGM---ESEELAAAS-KL---HSDVNFY---QTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFR 248 (405)
Q Consensus 179 ~~~~~~v~f~~~~~~~---~~~~~~~~a-~~---~~~~~f~---~~~~~~l~~~~~~~~~~~~p~i~~~~~~~~~~~~y~ 248 (405)
.++.|+|.||++||.. ..+.|.+.. .+ ...++.+ .+.-+.++..|++. +||+|.+++.+ ..+.|.
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiq---GYPTIk~~kgd--~a~dYR 116 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQ---GYPTIKFFKGD--HAIDYR 116 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccC---CCceEEEecCC--eeeecC
Confidence 4679999999999987 455677766 22 2344444 46778899999999 59999999854 789999
Q ss_pred CCCCHHHHHHHHhccCCCCccccccc--cccccccCCccEEEEEecCCCcHHHHHHHHHHHHHhcCcEEEEEEEcCCcch
Q 015527 249 HQFTRLAIANFVTHTKHPLVVTLTIH--NAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKLLHVYVEMNSEGV 326 (405)
Q Consensus 249 g~~~~~~l~~fi~~~~~p~v~~l~~~--~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~va~~~~~~~~f~~id~~~~~~ 326 (405)
|.++.++|..|.....-|++..++.. .+..+.....|.+++|-..+. -..+.+.+.|.. ++.++..-.....
T Consensus 117 G~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~--PL~d~fidAASe---~~~~a~FfSasee- 190 (468)
T KOG4277|consen 117 GGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTGEG--PLFDAFIDAASE---KFSVARFFSASEE- 190 (468)
T ss_pred CCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCCCC--cHHHHHHHHhhh---heeeeeeeccccc-
Confidence 99999999999999999999888863 333333344477777765443 344556666655 5555555443322
Q ss_pred hhhhhhhcCCCCCCCcEEEEEeCCCccccCCCCCCHHHHHHHHHH
Q 015527 327 GRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEE 371 (405)
Q Consensus 327 ~~~~~~~~gi~~~~~p~i~i~~~~~~~y~~~~~~~~~~l~~Fi~~ 371 (405)
+.-.. .+...-|.+++++ ...+. ...+.+.++|..||+.
T Consensus 191 ---VaPe~-~~~kempaV~VFK-Detf~-i~de~dd~dLseWinR 229 (468)
T KOG4277|consen 191 ---VAPEE-NDAKEMPAVAVFK-DETFE-IEDEGDDEDLSEWINR 229 (468)
T ss_pred ---cCCcc-cchhhccceEEEc-cceeE-EEecCchhHHHHHHhH
Confidence 21111 2333468888885 23333 3334567888888876
No 152
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.64 E-value=1.5e-07 Score=74.80 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=61.2
Q ss_pred CCCcEEEEEe-cCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc----------------------cHhHHHhCCCcc
Q 015527 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------EKDLAKEYNILA 127 (405)
Q Consensus 72 ~~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~----------------------~~~~~~~~~i~~ 127 (405)
.+++++|.|| +.||+.|....|.+.+++++++. ++.++.|..+. +..+.+.||+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 6889999999 78999999999999999999854 68888887643 234566777776
Q ss_pred cc---------eEEEEe-CCeeeeeecCCCC
Q 015527 128 YP---------TLYLFV-AGVRQFQFFGERT 148 (405)
Q Consensus 128 ~P---------t~~~~~-~g~~~~~~~g~~~ 148 (405)
.| ++++++ +|+++.++.|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 65 788887 7988888888643
No 153
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.64 E-value=2.3e-07 Score=76.31 Aligned_cols=93 Identities=10% Similarity=0.112 Sum_probs=64.0
Q ss_pred cEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc--------c---HhHHH-hCC
Q 015527 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------E---KDLAK-EYN 124 (405)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~--------~---~~~~~-~~~ 124 (405)
+..++++.++..--.+++++|.|||+||++|+ ..|.+++++++|++ ++.++.+.|++ . ...|+ +++
T Consensus 10 ~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g 88 (183)
T PRK10606 10 VTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWG 88 (183)
T ss_pred eECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccC
Confidence 34455554443333579999999999999997 58999999999986 79999999852 1 23454 577
Q ss_pred CcccceEEEEe-CCeeeeeecCCCCHHHHHHHHHhhhc
Q 015527 125 ILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (405)
Q Consensus 125 i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (405)
+. +|.+-=++ +|. ++..+.+|+.+..+
T Consensus 89 ~~-Fpv~~k~dvnG~---------~~~pl~~~Lk~~~~ 116 (183)
T PRK10606 89 VT-FPMFSKIEVNGE---------GRHPLYQKLIAAAP 116 (183)
T ss_pred CC-ceeEEEEccCCC---------CCCHHHHHHHHhCC
Confidence 64 66554444 552 44566777776553
No 154
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.64 E-value=1.1e-07 Score=75.91 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=38.1
Q ss_pred CCCcEEEEEecCCChh-HhhhHHHHHHHHHHccC----CcEEEEEeCc
Q 015527 72 KNRNVMVMFYANWCYW-SKKLAPEFAAAAKMLKG----EADLVMVDAY 114 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~-C~~~~~~~~~~~~~~~~----~v~~~~v~~~ 114 (405)
.+++++|.||++||++ |....+.+.++++++++ ++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 6789999999999998 99999999999999875 3888888764
No 155
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.2e-07 Score=71.70 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=82.9
Q ss_pred CCccccccccccc-cccCCccEEE-EEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCc
Q 015527 266 PLVVTLTIHNAQF-VFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPR 342 (405)
Q Consensus 266 p~v~~l~~~~~~~-~~~~~~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p 342 (405)
..+...+...++. +.++..|+++ |++.||+ |+.+.+.+.+++.++.|++.|+.+|.+++. ++...|+|.. .|
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~---ela~~Y~I~a--vP 117 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHP---ELAEDYEISA--VP 117 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccccc---chHhhcceee--ee
Confidence 3445555555554 3444447666 6778898 999999999999999999999999999876 9999999975 79
Q ss_pred EEEEEeCCCccccCCCCCCHHHHHHHHHHHhc
Q 015527 343 VIAYSARDAKKYVLNGELTLSSIKSFGEEFLE 374 (405)
Q Consensus 343 ~i~i~~~~~~~y~~~~~~~~~~l~~Fi~~~~~ 374 (405)
++++++.+...-.+-|..+.+.|.+||++++.
T Consensus 118 tvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 118 TVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 99998864444467888999999999999864
No 156
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.59 E-value=3.1e-07 Score=68.53 Aligned_cols=97 Identities=28% Similarity=0.406 Sum_probs=76.6
Q ss_pred cccccccccccCCccEEE-EEecCCC-cHHHHHHHHHHHHHhcC--cEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEE
Q 015527 271 LTIHNAQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKG--KLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAY 346 (405)
Q Consensus 271 l~~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~--~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i 346 (405)
++..++......+.+.++ ++.++|. |+.+.+.+.++|..+.+ ++.|+.+|++... .+++.|++.. .|.+++
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~i~~--~P~~~~ 75 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK---DLASRFGVSG--FPTIKF 75 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH---HHHHhCCCCc--CCEEEE
Confidence 355667766665555544 5556666 88888999999999987 6999999998754 8889999964 789888
Q ss_pred EeCCCccccCCCCCCHHHHHHHHHHH
Q 015527 347 SARDAKKYVLNGELTLSSIKSFGEEF 372 (405)
Q Consensus 347 ~~~~~~~y~~~~~~~~~~l~~Fi~~~ 372 (405)
++.++..+.+.|..+.++|..||++.
T Consensus 76 ~~~~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 76 FPKGKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred ecCCCcceeecCCCCHHHHHHHHHhc
Confidence 88755477789999999999999874
No 157
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.59 E-value=4.6e-07 Score=76.79 Aligned_cols=83 Identities=17% Similarity=0.206 Sum_probs=68.8
Q ss_pred CCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCc-----------ccHhHHHhCCCcccceEEEEe-CCee
Q 015527 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-----------LEKDLAKEYNILAYPTLYLFV-AGVR 139 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~-----------~~~~~~~~~~i~~~Pt~~~~~-~g~~ 139 (405)
.++.-|+.||.+.|++|+.+.|.+..++++++ +.+..|+.| .+..+++++||..+|++++++ ++..
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 36789999999999999999999999999994 666666665 457899999999999999998 4433
Q ss_pred e-eeecCCCCHHHHHHHH
Q 015527 140 Q-FQFFGERTRDVISAWV 156 (405)
Q Consensus 140 ~-~~~~g~~~~~~l~~~i 156 (405)
. .--.|..+.++|.+-|
T Consensus 197 ~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEeeecCCHHHHHHhh
Confidence 3 4456999999987754
No 158
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.59 E-value=2.2e-07 Score=69.39 Aligned_cols=97 Identities=24% Similarity=0.307 Sum_probs=76.9
Q ss_pred ccccccccccccccCCccEEEEEecCCC-cHHHHHHHHHHHHHhcC---cEEEEEEEcCCcchhhhhhhhcCCCCCCCcE
Q 015527 268 VVTLTIHNAQFVFQDPRKQLWLFAPAYG-SDKVILTFEEVAKALKG---KLLHVYVEMNSEGVGRRVSQEFGVSGNAPRV 343 (405)
Q Consensus 268 v~~l~~~~~~~~~~~~~~~~i~f~~~~~-~~~~~~~~~~va~~~~~---~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~ 343 (405)
+.+++.+++......+..++.++++||. |+.+.+.++++|+++++ ++.|+.+|++... .+++.|++.. .|.
T Consensus 2 ~~~l~~~~f~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~--~Pt 76 (102)
T cd03005 2 VLELTEDNFDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR---ELCSEFQVRG--YPT 76 (102)
T ss_pred eeECCHHHHHHHhhcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh---hhHhhcCCCc--CCE
Confidence 3467777888777665444556778887 99999999999999987 7999999999754 7889999864 788
Q ss_pred EEEEeCCCccccCCCCCCHHHHHHHH
Q 015527 344 IAYSARDAKKYVLNGELTLSSIKSFG 369 (405)
Q Consensus 344 i~i~~~~~~~y~~~~~~~~~~l~~Fi 369 (405)
++++..+.....+.|..+.++|.+||
T Consensus 77 ~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 77 LLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 88886554556688999999998885
No 159
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.57 E-value=2.7e-07 Score=62.26 Aligned_cols=60 Identities=33% Similarity=0.634 Sum_probs=52.1
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHH---hCCCcccceEEEEeCC
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK---EYNILAYPTLYLFVAG 137 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~---~~~i~~~Pt~~~~~~g 137 (405)
++.||++||++|+...+.+.++ +....++.+..++++....... .+++.++|+++++++|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 4445589999999998877665 8899999999999876
No 160
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.56 E-value=4.2e-07 Score=68.64 Aligned_cols=97 Identities=21% Similarity=0.282 Sum_probs=76.6
Q ss_pred ccccccccccccccCCccEE-EEEecCCC-cHHHHHHHHHHHHHhc------CcEEEEEEEcCCcchhhhhhhhcCCCCC
Q 015527 268 VVTLTIHNAQFVFQDPRKQL-WLFAPAYG-SDKVILTFEEVAKALK------GKLLHVYVEMNSEGVGRRVSQEFGVSGN 339 (405)
Q Consensus 268 v~~l~~~~~~~~~~~~~~~~-i~f~~~~~-~~~~~~~~~~va~~~~------~~~~f~~id~~~~~~~~~~~~~~gi~~~ 339 (405)
+.+++.+++........+++ .++++||. |+.+.+.|+++|++++ +++.|+.+|++... .+++.||+..
T Consensus 3 v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~---~l~~~~~v~~- 78 (108)
T cd02996 3 IVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES---DIADRYRINK- 78 (108)
T ss_pred eEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH---HHHHhCCCCc-
Confidence 56778889988886666544 46677887 9999999999998864 25899999999754 8999999975
Q ss_pred CCcEEEEEeCCC-ccccCCCCCCHHHHHHHH
Q 015527 340 APRVIAYSARDA-KKYVLNGELTLSSIKSFG 369 (405)
Q Consensus 340 ~~p~i~i~~~~~-~~y~~~~~~~~~~l~~Fi 369 (405)
.|.+.++..+. ....+.|..+.++|.+||
T Consensus 79 -~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 79 -YPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred -CCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 68888887533 246688899999999885
No 161
>PRK15000 peroxidase; Provisional
Probab=98.56 E-value=6.4e-07 Score=75.30 Aligned_cols=87 Identities=16% Similarity=0.282 Sum_probs=69.3
Q ss_pred CCCcEEEEEec-CCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc----------------------------cHhHHH
Q 015527 72 KNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK 121 (405)
Q Consensus 72 ~~~~~~v~f~a-~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~ 121 (405)
++++++|.||+ +||+.|..+++.|.+.++++++ ++.++.|.++. +..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 57899999999 5999999999999999999976 67788777653 224567
Q ss_pred hCCCc------ccceEEEEe-CCeeeeeecC----CCCHHHHHHHHHh
Q 015527 122 EYNIL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVRE 158 (405)
Q Consensus 122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~ 158 (405)
.||+. +.|++++++ +|++...+.| .++.+++.+.++.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 78887 699999998 8977766654 3677888777754
No 162
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.52 E-value=8e-07 Score=66.21 Aligned_cols=97 Identities=24% Similarity=0.195 Sum_probs=78.2
Q ss_pred ccccccccccccccCCccEEEEEecCCC-cHHHHHHHHHHHHHhcC-cEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEE
Q 015527 268 VVTLTIHNAQFVFQDPRKQLWLFAPAYG-SDKVILTFEEVAKALKG-KLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIA 345 (405)
Q Consensus 268 v~~l~~~~~~~~~~~~~~~~i~f~~~~~-~~~~~~~~~~va~~~~~-~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~ 345 (405)
+.+++.+++..+.... .++.++++||. |+...+.|.++|..+++ ++.|+.+|+++.. .+++.+++.. .|.++
T Consensus 3 v~~l~~~~f~~~~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~---~~~~~~~i~~--~Pt~~ 76 (101)
T cd02994 3 VVELTDSNWTLVLEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP---GLSGRFFVTA--LPTIY 76 (101)
T ss_pred eEEcChhhHHHHhCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH---hHHHHcCCcc--cCEEE
Confidence 5677888888877543 56678888988 99999999999998875 5999999999754 7889999965 68888
Q ss_pred EEeCCCccccCCCCCCHHHHHHHHHH
Q 015527 346 YSARDAKKYVLNGELTLSSIKSFGEE 371 (405)
Q Consensus 346 i~~~~~~~y~~~~~~~~~~l~~Fi~~ 371 (405)
++. +|....+.|..+.++|.+|+++
T Consensus 77 ~~~-~g~~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 77 HAK-DGVFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EeC-CCCEEEecCCCCHHHHHHHHhC
Confidence 775 4555668899999999999863
No 163
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.50 E-value=8e-07 Score=62.47 Aligned_cols=69 Identities=17% Similarity=0.285 Sum_probs=48.9
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHh-----CCCcccceEEEEeCCeeeeeecCCCCHHH
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKE-----YNILAYPTLYLFVAGVRQFQFFGERTRDV 151 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~-----~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (405)
++.||++||++|+++++.+.++ ++.+-.+|+++++..... +++.++|++ ++.+|.... ..+..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT----NPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec----CCCHHH
Confidence 5789999999999999988665 345567888877665554 489999997 577774433 334445
Q ss_pred HHHHH
Q 015527 152 ISAWV 156 (405)
Q Consensus 152 l~~~i 156 (405)
+.+.+
T Consensus 71 ~~~~l 75 (77)
T TIGR02200 71 VKAKL 75 (77)
T ss_pred HHHHh
Confidence 55544
No 164
>PRK09381 trxA thioredoxin; Provisional
Probab=98.48 E-value=1.4e-06 Score=65.85 Aligned_cols=101 Identities=18% Similarity=0.273 Sum_probs=78.9
Q ss_pred ccccccccccc-cccCCccEEE-EEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEE
Q 015527 268 VVTLTIHNAQF-VFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVI 344 (405)
Q Consensus 268 v~~l~~~~~~~-~~~~~~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i 344 (405)
+.+++.+++.. +...+.++++ +|.++|. |....+.++++++++.+++.|+.+|++... .+++.|++.. .|.+
T Consensus 5 v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~--~Pt~ 79 (109)
T PRK09381 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYGIRG--IPTL 79 (109)
T ss_pred ceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh---hHHHhCCCCc--CCEE
Confidence 45666677764 3444445554 5667776 999999999999999999999999999755 7788999864 7888
Q ss_pred EEEeCCCccccCCCCCCHHHHHHHHHHHh
Q 015527 345 AYSARDAKKYVLNGELTLSSIKSFGEEFL 373 (405)
Q Consensus 345 ~i~~~~~~~y~~~~~~~~~~l~~Fi~~~~ 373 (405)
++++.+...+.+.|..+.+.|..||+..+
T Consensus 80 ~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 80 LLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 88875555567888889999999998765
No 165
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.47 E-value=1.4e-06 Score=75.82 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=76.1
Q ss_pred CCCcEEcC-hhhHHHHHcC---CCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccce
Q 015527 55 AKDVVSLN-GKNFSEFMGK---NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT 130 (405)
Q Consensus 55 ~~~~~~l~-~~~~~~~~~~---~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt 130 (405)
...+.+++ ++.|-..+.. +..|+|.||.+.++.|..+...|..+|.+|. .+.|+.|.....+ +...|.+...||
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~-~~~~f~~~~LPt 201 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRASKCP-ASENFPDKNLPT 201 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCC-TTTTS-TTC-SE
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehhccC-cccCCcccCCCE
Confidence 35677885 5778777743 3469999999999999999999999999998 6999999987765 788999999999
Q ss_pred EEEEeCCeeeeeecC-------CCCHHHHHHHHHhh
Q 015527 131 LYLFVAGVRQFQFFG-------ERTRDVISAWVREK 159 (405)
Q Consensus 131 ~~~~~~g~~~~~~~g-------~~~~~~l~~~i~~~ 159 (405)
+++|++|..+..+.| ..+...|..||.++
T Consensus 202 llvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 202 LLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 999999987777664 34556666666655
No 166
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.47 E-value=1.5e-06 Score=73.43 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=64.7
Q ss_pred cEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc---------------------------cHhHHHhCCCc
Q 015527 75 NVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKEYNIL 126 (405)
Q Consensus 75 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~---------------------------~~~~~~~~~i~ 126 (405)
.+++.||++||+.|..+++.+.++++++++ ++.++.|+++. +..+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 456689999999999999999999999976 68888887654 23567788875
Q ss_pred ----c----cceEEEEe-CCeeeeeecC----CCCHHHHHHHHHhh
Q 015527 127 ----A----YPTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK 159 (405)
Q Consensus 127 ----~----~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~ 159 (405)
+ .|++++++ +|++...+.+ .++.+++.+.|..+
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 2 35688887 8877666554 45677887777654
No 167
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.46 E-value=1.8e-06 Score=73.38 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=67.0
Q ss_pred CCCc-EEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc---------------------------cHhHHHh
Q 015527 72 KNRN-VMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE 122 (405)
Q Consensus 72 ~~~~-~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~---------------------------~~~~~~~ 122 (405)
.++. +|+.||++||+.|..+++.|.++++++++ ++.++.|+++. +..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 3555 56789999999999999999999999976 78888887754 2345777
Q ss_pred CCCc-------ccceEEEEe-CCeeeeeec----CCCCHHHHHHHHHhh
Q 015527 123 YNIL-------AYPTLYLFV-AGVRQFQFF----GERTRDVISAWVREK 159 (405)
Q Consensus 123 ~~i~-------~~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~~ 159 (405)
||+. ..|++++++ +|++...+. ..++.+++.+.|..+
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8873 689999998 887665432 236778888877643
No 168
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.7e-06 Score=71.04 Aligned_cols=154 Identities=14% Similarity=0.211 Sum_probs=104.5
Q ss_pred HcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeeeeeecCCCCH
Q 015527 70 MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR 149 (405)
Q Consensus 70 ~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (405)
..+.+..++.||++||..|.++...+..+++.. .++.|+.++.++.++++..+.+...|.+.++..|+.+.+..|....
T Consensus 14 ~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~ 92 (227)
T KOG0911|consen 14 DQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPP 92 (227)
T ss_pred HhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcH
Confidence 347789999999999999999999999999988 4799999999999999999999999999999988778888876554
Q ss_pred HHHHHH---HHhhh---cC----CccccC--ChhHHHHHhcc--CCeEEEEEEc-----CCCCccHHHHHHHhccCCcce
Q 015527 150 DVISAW---VREKM---TL----GTYSIT--TTDEAERILTV--ESKLVLGFLH-----DLEGMESEELAAASKLHSDVN 210 (405)
Q Consensus 150 ~~l~~~---i~~~~---~~----~~~~i~--~~~~~~~~l~~--~~~~~v~f~~-----~~~~~~~~~~~~~a~~~~~~~ 210 (405)
.....+ ..... +. .+.... +.+.++..+.. +...++.|.. +.|+........+-...-++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~ 172 (227)
T KOG0911|consen 93 FLVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYT 172 (227)
T ss_pred HHHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCee
Confidence 443332 22221 11 111100 11112223322 3344555664 345666666666655444454
Q ss_pred EE-EecCHHHHhhcC
Q 015527 211 FY-QTTSADVAEFFH 224 (405)
Q Consensus 211 f~-~~~~~~l~~~~~ 224 (405)
++ .-+++++++.++
T Consensus 173 ~fdIL~DeelRqglK 187 (227)
T KOG0911|consen 173 IFDVLTDEELRQGLK 187 (227)
T ss_pred EEeccCCHHHHHHhh
Confidence 43 447888887665
No 169
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.44 E-value=2.2e-06 Score=59.88 Aligned_cols=72 Identities=17% Similarity=0.391 Sum_probs=55.9
Q ss_pred EEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeeeeeecC-CCCHHHHHHHHH
Q 015527 79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFG-ERTRDVISAWVR 157 (405)
Q Consensus 79 ~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i~ 157 (405)
.+++++|++|..+...++++++.++ +.+-.++..+.+++ .+|||.++|++++ ||+ ..+.| ..+.+++.+||+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~--~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK--VVFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE--EEEESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE--EEEEecCCCHHHHHHHhC
Confidence 3468889999999999999999984 66677777666666 9999999999944 673 55788 778899988874
No 170
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.43 E-value=1.4e-06 Score=73.91 Aligned_cols=110 Identities=18% Similarity=0.255 Sum_probs=85.2
Q ss_pred CccccccccccccccC-----CccE-EEEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCC
Q 015527 267 LVVTLTIHNAQFVFQD-----PRKQ-LWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGN 339 (405)
Q Consensus 267 ~v~~l~~~~~~~~~~~-----~~~~-~i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~ 339 (405)
.+.+++..+|+.+... ..++ +.+|++||. |+...+.|+++|+++++.+.|+.+|++... .+++.|++..
T Consensus 31 ~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~---~l~~~~~I~~- 106 (224)
T PTZ00443 31 ALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL---NLAKRFAIKG- 106 (224)
T ss_pred CcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH---HHHHHcCCCc-
Confidence 4678888888876543 2344 456778887 999999999999999999999999999754 8899999975
Q ss_pred CCcEEEEEeCCCcccc-CCCCCCHHHHHHHHHHHhcCceeeecccCc
Q 015527 340 APRVIAYSARDAKKYV-LNGELTLSSIKSFGEEFLEDKLLNQSDQIS 385 (405)
Q Consensus 340 ~~p~i~i~~~~~~~y~-~~~~~~~~~l~~Fi~~~~~Gkl~~kse~iP 385 (405)
.|.+++++. |..+. ..|..+.++|.+|+.+-... ..++|+|
T Consensus 107 -~PTl~~f~~-G~~v~~~~G~~s~e~L~~fi~~~~~~---~~~~~~p 148 (224)
T PTZ00443 107 -YPTLLLFDK-GKMYQYEGGDRSTEKLAAFALGDFKK---ALGAPVP 148 (224)
T ss_pred -CCEEEEEEC-CEEEEeeCCCCCHHHHHHHHHHHHHh---hcCCCCC
Confidence 688888874 55554 45689999999999888765 3344444
No 171
>PRK10996 thioredoxin 2; Provisional
Probab=98.42 E-value=1.7e-06 Score=68.34 Aligned_cols=100 Identities=24% Similarity=0.273 Sum_probs=78.2
Q ss_pred cccccccccccccCCccEE-EEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEE
Q 015527 269 VTLTIHNAQFVFQDPRKQL-WLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAY 346 (405)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~-i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i 346 (405)
..++..++..+...+.+++ .++.+|+. |..+.+.|.++++++.+++.|+.+|.+... .+++.|++.. .|.+++
T Consensus 38 i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~---~l~~~~~V~~--~Ptlii 112 (139)
T PRK10996 38 INATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER---ELSARFRIRS--IPTIMI 112 (139)
T ss_pred EEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH---HHHHhcCCCc--cCEEEE
Confidence 3456667777666666544 45667777 888999999999999999999999998754 8899999965 788888
Q ss_pred EeCCCccccCCCCCCHHHHHHHHHHHh
Q 015527 347 SARDAKKYVLNGELTLSSIKSFGEEFL 373 (405)
Q Consensus 347 ~~~~~~~y~~~~~~~~~~l~~Fi~~~~ 373 (405)
++.+.....+.|..+.+.+.+|++..+
T Consensus 113 ~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 113 FKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 875444445788899999999998753
No 172
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.42 E-value=7e-06 Score=60.77 Aligned_cols=104 Identities=23% Similarity=0.349 Sum_probs=79.4
Q ss_pred CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHH-HHccC--CcEEEEEeCc-----ccHhHHHhCCC--
Q 015527 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAA-KMLKG--EADLVMVDAY-----LEKDLAKEYNI-- 125 (405)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~-~~~~~--~v~~~~v~~~-----~~~~~~~~~~i-- 125 (405)
...+.|+.-+|++.+...+.++|.|=... |--+-+.+|.+++ +..+. ++-++.|.+. +|.+++++|++
T Consensus 4 ~G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TTSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred CceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 45688999999999999999999996542 3334567788888 44333 7889999774 46889999999
Q ss_pred cccceEEEEe-CCeeeeee--cCCCCHHHHHHHHHhhhc
Q 015527 126 LAYPTLYLFV-AGVRQFQF--FGERTRDVISAWVREKMT 161 (405)
Q Consensus 126 ~~~Pt~~~~~-~g~~~~~~--~g~~~~~~l~~~i~~~~~ 161 (405)
..+|.+++|. +.....+| .|+.+.+.|.+|+..+.+
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 5689999999 55677888 899999999999998864
No 173
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.41 E-value=2.5e-06 Score=73.51 Aligned_cols=86 Identities=19% Similarity=0.257 Sum_probs=70.6
Q ss_pred CCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCccc-----------HhHHHhCCCcccceEEEEe-CCeee
Q 015527 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-----------KDLAKEYNILAYPTLYLFV-AGVRQ 140 (405)
Q Consensus 73 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~-----------~~~~~~~~i~~~Pt~~~~~-~g~~~ 140 (405)
++.-++.||.+.|++|+++.|.+..++++++ +.+..|++|.. ..+++++||..+|++++++ +++..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 4689999999999999999999999999996 66666666543 4588999999999999998 43344
Q ss_pred ee-ecCCCCHHHHHHHHHhhh
Q 015527 141 FQ-FFGERTRDVISAWVREKM 160 (405)
Q Consensus 141 ~~-~~g~~~~~~l~~~i~~~~ 160 (405)
.. -.|.++.++|.+-|...+
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVL 248 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHH
Confidence 33 459999999988877655
No 174
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.40 E-value=3.2e-06 Score=73.34 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=67.2
Q ss_pred CCCcEEEEEe-cCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc----------------------------cHhHHH
Q 015527 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK 121 (405)
Q Consensus 72 ~~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~ 121 (405)
+++.+++.|| ++||+.|..+++.|.+.++++++ ++.++.|.++. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4567777777 89999999999999999999975 67777776653 235678
Q ss_pred hCCCc-----ccceEEEEe-CCeeeeee----cCCCCHHHHHHHHHhh
Q 015527 122 EYNIL-----AYPTLYLFV-AGVRQFQF----FGERTRDVISAWVREK 159 (405)
Q Consensus 122 ~~~i~-----~~Pt~~~~~-~g~~~~~~----~g~~~~~~l~~~i~~~ 159 (405)
.||+. ..|++++++ +|++...+ ...++.+++.+.|...
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 88985 589999998 89776654 2346788887776533
No 175
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.40 E-value=2.6e-06 Score=67.60 Aligned_cols=80 Identities=20% Similarity=0.345 Sum_probs=57.7
Q ss_pred cChhhHHHHHcCCCcEEEEEecCCChhHhhhHHH-H--HHHHHHccCCcEEEEEeCcccHhHHHhC--------CCcccc
Q 015527 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPE-F--AAAAKMLKGEADLVMVDAYLEKDLAKEY--------NILAYP 129 (405)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~-~--~~~~~~~~~~v~~~~v~~~~~~~~~~~~--------~i~~~P 129 (405)
.+.+.+...-.++|+++|.++.+||..|+.+..+ | .++++.++.++.-+.||.++.+++.+.| |..|+|
T Consensus 25 w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 25 WGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred CCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCC
Confidence 4567788888899999999999999999998763 3 5567777667889999999999998887 789999
Q ss_pred eEEEEe-CCeee
Q 015527 130 TLYLFV-AGVRQ 140 (405)
Q Consensus 130 t~~~~~-~g~~~ 140 (405)
+.++.. +|+..
T Consensus 105 l~vfltPdg~p~ 116 (163)
T PF03190_consen 105 LTVFLTPDGKPF 116 (163)
T ss_dssp EEEEE-TTS-EE
T ss_pred ceEEECCCCCee
Confidence 999998 88544
No 176
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.39 E-value=3.5e-05 Score=75.78 Aligned_cols=179 Identities=13% Similarity=0.113 Sum_probs=131.5
Q ss_pred CCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEe-CCe-eeeeecCCCCH
Q 015527 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV-AGV-RQFQFFGERTR 149 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~-~g~-~~~~~~g~~~~ 149 (405)
.+.+.++.|+.+.|..|.++...+++++. +.+++.+...|..++.+++++|++...|++.+++ +|+ .-.+|.|-..-
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G 443 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSG 443 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCcc
Confidence 34567888999999999999999999985 4557888888988999999999999999999996 653 34899998888
Q ss_pred HHHHHHHHhhhc--CCccccCChhHHHHHhccCCe-EEEEEEcCCCCccHHHHH---HHhccCCcceEEE---ecCHHHH
Q 015527 150 DVISAWVREKMT--LGTYSITTTDEAERILTVESK-LVLGFLHDLEGMESEELA---AASKLHSDVNFYQ---TTSADVA 220 (405)
Q Consensus 150 ~~l~~~i~~~~~--~~~~~i~~~~~~~~~l~~~~~-~~v~f~~~~~~~~~~~~~---~~a~~~~~~~f~~---~~~~~l~ 220 (405)
.++..+|...+. ..-..+ +.+..+.+..-+.+ .+-.|+.++|..+..... .++...+++..-. ...++++
T Consensus 444 ~Ef~s~i~~i~~~~~~~~~l-~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 522 (555)
T TIGR03143 444 HELNSFILALYNAAGPGQPL-GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLK 522 (555)
T ss_pred HhHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHH
Confidence 888888877752 223344 55555555544444 455678899998776544 3443444554433 3567889
Q ss_pred hhcCCCCCCCCCeEEEeecCCCccccccCCCCHHHHHHHH
Q 015527 221 EFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFV 260 (405)
Q Consensus 221 ~~~~~~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi 260 (405)
++|++-. .|++++-. ...+.|..+.+++..||
T Consensus 523 ~~~~v~~---vP~~~i~~-----~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 523 DEYGIMS---VPAIVVDD-----QQVYFGKKTIEEMLELI 554 (555)
T ss_pred HhCCcee---cCEEEECC-----EEEEeeCCCHHHHHHhh
Confidence 9999984 89998631 24566888889998886
No 177
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.38 E-value=2.3e-06 Score=64.02 Aligned_cols=96 Identities=23% Similarity=0.318 Sum_probs=74.7
Q ss_pred ccccccccccccccCC-ccE-EEEEecCCC-cHHHHHHHHHHHHHhcC--cEEEEEEEcCCcchhhhhhhhcCCCCCCCc
Q 015527 268 VVTLTIHNAQFVFQDP-RKQ-LWLFAPAYG-SDKVILTFEEVAKALKG--KLLHVYVEMNSEGVGRRVSQEFGVSGNAPR 342 (405)
Q Consensus 268 v~~l~~~~~~~~~~~~-~~~-~i~f~~~~~-~~~~~~~~~~va~~~~~--~~~f~~id~~~~~~~~~~~~~~gi~~~~~p 342 (405)
+.+++..++....... .+. +.++.+||. |+.+.+.++++|+.+++ ++.|+.+|++.. .++..+++. ..|
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~~~--~~P 75 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN----DVPSEFVVD--GFP 75 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch----hhhhhccCC--CCC
Confidence 4578888888766554 454 446667887 99999999999999987 599999999853 466777873 478
Q ss_pred EEEEEeCCC--ccccCCCCCCHHHHHHHH
Q 015527 343 VIAYSARDA--KKYVLNGELTLSSIKSFG 369 (405)
Q Consensus 343 ~i~i~~~~~--~~y~~~~~~~~~~l~~Fi 369 (405)
.+.++..++ ....+.|..+.++|.+||
T Consensus 76 t~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 76 TILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 888887643 456788999999999986
No 178
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.38 E-value=2.7e-06 Score=63.80 Aligned_cols=97 Identities=22% Similarity=0.363 Sum_probs=75.8
Q ss_pred ccccccccccccccCCc-cEEE-EEecCCC-cHHHHHHHHHHHHHhc--CcEEEEEEEcCC-cchhhhhhhhcCCCCCCC
Q 015527 268 VVTLTIHNAQFVFQDPR-KQLW-LFAPAYG-SDKVILTFEEVAKALK--GKLLHVYVEMNS-EGVGRRVSQEFGVSGNAP 341 (405)
Q Consensus 268 v~~l~~~~~~~~~~~~~-~~~i-~f~~~~~-~~~~~~~~~~va~~~~--~~~~f~~id~~~-~~~~~~~~~~~gi~~~~~ 341 (405)
+.+++..++........ +.++ +++++|. |.++.+.+.++++++. +++.|+.+|++. .. .+++.+++.. .
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~~~~~~i~~--~ 76 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK---DLAKKYGVSG--F 76 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch---hhHHhCCCCC--c
Confidence 34667777777665544 5554 5556766 8999999999999997 569999999997 44 8899999964 7
Q ss_pred cEEEEEeCC-CccccCCCCCCHHHHHHHH
Q 015527 342 RVIAYSARD-AKKYVLNGELTLSSIKSFG 369 (405)
Q Consensus 342 p~i~i~~~~-~~~y~~~~~~~~~~l~~Fi 369 (405)
|.+++++.+ ...+.+.|..+.++|.+||
T Consensus 77 P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 77 PTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 898888764 4566788999999999985
No 179
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=3.7e-06 Score=72.40 Aligned_cols=109 Identities=24% Similarity=0.338 Sum_probs=87.2
Q ss_pred cCCCcEEcChhhHHHHHcCC-C--cEEEEEec----CCChhHhhhHHHHHHHHHHccC--------CcEEEEEeCcccHh
Q 015527 54 YAKDVVSLNGKNFSEFMGKN-R--NVMVMFYA----NWCYWSKKLAPEFAAAAKMLKG--------EADLVMVDAYLEKD 118 (405)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~-~--~~~v~f~a----~~C~~C~~~~~~~~~~~~~~~~--------~v~~~~v~~~~~~~ 118 (405)
...+++.+++++|..++... + ..+|+|.| ..|.-|+++..+|+-+++.+.. ++-|..||.++.++
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 45789999999999998533 2 47888887 4699999999999999998754 58999999999999
Q ss_pred HHHhCCCcccceEEEEe--CCeee--eee---cCCCCHHHHHHHHHhhhcC
Q 015527 119 LAKEYNILAYPTLYLFV--AGVRQ--FQF---FGERTRDVISAWVREKMTL 162 (405)
Q Consensus 119 ~~~~~~i~~~Pt~~~~~--~g~~~--~~~---~g~~~~~~l~~~i~~~~~~ 162 (405)
+.+.+++...|++++|. .|+.. ..+ +-...++++.+|+.+...-
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv 168 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKV 168 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhh
Confidence 99999999999999996 34322 122 2234489999999887743
No 180
>PRK13189 peroxiredoxin; Provisional
Probab=98.36 E-value=3.8e-06 Score=71.87 Aligned_cols=88 Identities=14% Similarity=0.205 Sum_probs=65.9
Q ss_pred CCC-cEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc---------------------------cHhHHHh
Q 015527 72 KNR-NVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE 122 (405)
Q Consensus 72 ~~~-~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~---------------------------~~~~~~~ 122 (405)
.++ .+|+.||++||+.|..+.+.|.++++++++ ++.++.|.++. +..+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 456 455678899999999999999999999976 67777776653 2345677
Q ss_pred CCCc-------ccceEEEEe-CCeeeeeec----CCCCHHHHHHHHHhh
Q 015527 123 YNIL-------AYPTLYLFV-AGVRQFQFF----GERTRDVISAWVREK 159 (405)
Q Consensus 123 ~~i~-------~~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~~ 159 (405)
||+. ..|++++++ +|++...+. +.++.+++.+.|..+
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8875 469999998 887655443 456778888777654
No 181
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.35 E-value=5.5e-06 Score=70.45 Aligned_cols=88 Identities=15% Similarity=0.171 Sum_probs=66.3
Q ss_pred CCCcEE-EEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc---------------------------cHhHHHh
Q 015527 72 KNRNVM-VMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE 122 (405)
Q Consensus 72 ~~~~~~-v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~---------------------------~~~~~~~ 122 (405)
.++.++ +.||++||+.|..+++.|.+.++++++ ++.++.|+++. +..+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 456555 478999999999999999999999975 67888877653 2355677
Q ss_pred CCCc-------ccceEEEEe-CCeeeeeec----CCCCHHHHHHHHHhh
Q 015527 123 YNIL-------AYPTLYLFV-AGVRQFQFF----GERTRDVISAWVREK 159 (405)
Q Consensus 123 ~~i~-------~~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~~ 159 (405)
||+. ..|++++++ +|++...+. ..++.+++.+.|+.+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 7863 479999998 887665443 246888888888654
No 182
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.34 E-value=4.5e-06 Score=62.00 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=74.4
Q ss_pred ccccccccccccccCCccEEEEEecC---CC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcE
Q 015527 268 VVTLTIHNAQFVFQDPRKQLWLFAPA---YG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRV 343 (405)
Q Consensus 268 v~~l~~~~~~~~~~~~~~~~i~f~~~---~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~ 343 (405)
+++++..|++.....+.+.++.|... +. |..+.+.|.++|+++.+++.|+.+|.++.+ .++..|++.. .|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~---~la~~f~V~s--IPT 86 (111)
T cd02965 12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ---ALAARFGVLR--TPA 86 (111)
T ss_pred CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH---HHHHHcCCCc--CCE
Confidence 56788888888887766666665543 43 899999999999999999999999999865 9999999975 789
Q ss_pred EEEEeCCCccccCCCCCCHHHHH
Q 015527 344 IAYSARDAKKYVLNGELTLSSIK 366 (405)
Q Consensus 344 i~i~~~~~~~y~~~~~~~~~~l~ 366 (405)
+++++.+.....+.|..+.+++.
T Consensus 87 li~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 87 LLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEEECCEEEEEEeCccCHHHHh
Confidence 99987544445577777776654
No 183
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.33 E-value=7.8e-06 Score=61.97 Aligned_cols=91 Identities=8% Similarity=-0.015 Sum_probs=69.6
Q ss_pred HHcCCCcEEEEEecC----CChhHhhhHHHHHHHHHHccCCcEEEEEeCccc--HhHHHhCCCcccceEEEEe--C--Ce
Q 015527 69 FMGKNRNVMVMFYAN----WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE--KDLAKEYNILAYPTLYLFV--A--GV 138 (405)
Q Consensus 69 ~~~~~~~~~v~f~a~----~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~--~~~~~~~~i~~~Pt~~~~~--~--g~ 138 (405)
.-++.|.++|++|++ ||..|+..... .++.+.++.++.+...|++.. ..++..+++.++|++.++. + .+
T Consensus 13 ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~ 91 (116)
T cd02991 13 AKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMT 91 (116)
T ss_pred HHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceE
Confidence 346789999999999 89999766321 233334444688888887643 5789999999999999994 3 34
Q ss_pred eeeeecCCCCHHHHHHHHHhhh
Q 015527 139 RQFQFFGERTRDVISAWVREKM 160 (405)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~~~ 160 (405)
.+.+..|..+++++...+....
T Consensus 92 vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 92 IVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred EEEEEeCCCCHHHHHHHHHHHH
Confidence 5789999999999999887765
No 184
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.32 E-value=4.4e-06 Score=62.07 Aligned_cols=83 Identities=18% Similarity=0.279 Sum_probs=66.1
Q ss_pred cEEE-EEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCccccCCCCCCH
Q 015527 285 KQLW-LFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTL 362 (405)
Q Consensus 285 ~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~~y~~~~~~~~ 362 (405)
++++ ++.++|. |..+...+.++++++.+++.|+.+|++... .+++.||+.. .|.+++++.+.....+.|..+.
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~--~P~~~~~~~g~~~~~~~g~~~~ 90 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP---DIAAKYGIRS--IPTLLLFKNGKEVDRSVGALPK 90 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH---HHHHHcCCCc--CCEEEEEeCCcEeeeecCCCCH
Confidence 4444 5556666 889999999999999989999999999754 7889999975 7888888654444556777888
Q ss_pred HHHHHHHHHH
Q 015527 363 SSIKSFGEEF 372 (405)
Q Consensus 363 ~~l~~Fi~~~ 372 (405)
+.+.+|+++.
T Consensus 91 ~~l~~~l~~~ 100 (101)
T TIGR01068 91 AALKQLINKN 100 (101)
T ss_pred HHHHHHHHhh
Confidence 9999999874
No 185
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.30 E-value=5.7e-06 Score=60.90 Aligned_cols=82 Identities=16% Similarity=0.271 Sum_probs=66.2
Q ss_pred ccEEE-EEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCccccCCCCCC
Q 015527 284 RKQLW-LFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELT 361 (405)
Q Consensus 284 ~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~~y~~~~~~~ 361 (405)
.++++ ++.+|+. |....+.+.+++..+.+++.|+.+|++... .+++.|++.. .|.+++++.+.....+.|..+
T Consensus 13 ~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~l~~~~~i~~--~Pt~~~~~~g~~~~~~~g~~~ 87 (96)
T cd02956 13 VPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP---QIAQQFGVQA--LPTVYLFAAGQPVDGFQGAQP 87 (96)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH---HHHHHcCCCC--CCEEEEEeCCEEeeeecCCCC
Confidence 35444 6667877 999999999999999988999999999855 8899999975 788888874333345788889
Q ss_pred HHHHHHHHH
Q 015527 362 LSSIKSFGE 370 (405)
Q Consensus 362 ~~~l~~Fi~ 370 (405)
.++|..|++
T Consensus 88 ~~~l~~~l~ 96 (96)
T cd02956 88 EEQLRQMLD 96 (96)
T ss_pred HHHHHHHhC
Confidence 999999874
No 186
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.29 E-value=2.7e-06 Score=67.98 Aligned_cols=89 Identities=25% Similarity=0.276 Sum_probs=78.9
Q ss_pred CCcEEcC-hhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEE
Q 015527 56 KDVVSLN-GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (405)
Q Consensus 56 ~~~~~l~-~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 134 (405)
....++. ..+|-+...+..-|++.||.+.-..|+-+-..++.+|+.+- ...|+.||....|-++.+++|..+|++.+|
T Consensus 66 G~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~PFlv~kL~IkVLP~v~l~ 144 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKAPFLVTKLNIKVLPTVALF 144 (211)
T ss_pred ceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEecccCceeeeeeeeeEeeeEEEE
Confidence 3445554 67787777788899999999999999999999999999976 589999999999999999999999999999
Q ss_pred eCCeeeeeecC
Q 015527 135 VAGVRQFQFFG 145 (405)
Q Consensus 135 ~~g~~~~~~~g 145 (405)
.+|....++.|
T Consensus 145 k~g~~~D~iVG 155 (211)
T KOG1672|consen 145 KNGKTVDYVVG 155 (211)
T ss_pred EcCEEEEEEee
Confidence 99988777776
No 187
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.29 E-value=3.8e-06 Score=62.88 Aligned_cols=99 Identities=25% Similarity=0.301 Sum_probs=76.0
Q ss_pred ccccccccccccccCCccEEE-EEecCCC-cHHHHHHHHHHHHHhc--CcEEEEEEEcCCcchhhhhhhhcCCCCCCCcE
Q 015527 268 VVTLTIHNAQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALK--GKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRV 343 (405)
Q Consensus 268 v~~l~~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~va~~~~--~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~ 343 (405)
+..++..++......+.+.++ ++.+||. |.+..+.+.++++.+. +.+.|+.+|++... +..+++.+|+.. .|.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~i~~--~Pt 78 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE-HDALKEEYNVKG--FPT 78 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc-cHHHHHhCCCcc--ccE
Confidence 345667777777776665544 5566776 9999999999999987 66899999999743 447889999964 688
Q ss_pred EEEEeCCCccccCCCCCCHHHHHHHH
Q 015527 344 IAYSARDAKKYVLNGELTLSSIKSFG 369 (405)
Q Consensus 344 i~i~~~~~~~y~~~~~~~~~~l~~Fi 369 (405)
+++++.+.....+.|..+.+.+.+|+
T Consensus 79 ~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 79 FKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 88887644466788889999998885
No 188
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.26 E-value=2.3e-06 Score=61.28 Aligned_cols=58 Identities=22% Similarity=0.384 Sum_probs=44.5
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHh-----HHHhCCCcccceEEEEeCCe
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD-----LAKEYNILAYPTLYLFVAGV 138 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~-----~~~~~~i~~~Pt~~~~~~g~ 138 (405)
++.|+++||++|+.+.+.+.++. ....+.+..|+.+++.. +.+.+++.++|++ |-+|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 47899999999999999999876 33347788888765432 6667799999998 34663
No 189
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.25 E-value=6.4e-06 Score=62.21 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=73.4
Q ss_pred cccccccccccccc---CCccEEE-EEecCCC-cHHHHHHHHHHHHHhcCc-EEEEEEEcCCcchhhhhhh-hcCCCCCC
Q 015527 268 VVTLTIHNAQFVFQ---DPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGK-LLHVYVEMNSEGVGRRVSQ-EFGVSGNA 340 (405)
Q Consensus 268 v~~l~~~~~~~~~~---~~~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~-~~f~~id~~~~~~~~~~~~-~~gi~~~~ 340 (405)
|.+++.+++..+.. .+.++++ ++++||. |+++.+.|.++|++++++ +.|+.+|++.. ...++. .+++..
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--~~~~~~~~~~v~~-- 78 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--QREFAKEELQLKS-- 78 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--chhhHHhhcCCCc--
Confidence 56778888887764 2345544 6667777 999999999999999974 99999999863 125554 588864
Q ss_pred CcEEEEEeC-CCccccCCC-CCCHHHHHHHH
Q 015527 341 PRVIAYSAR-DAKKYVLNG-ELTLSSIKSFG 369 (405)
Q Consensus 341 ~p~i~i~~~-~~~~y~~~~-~~~~~~l~~Fi 369 (405)
.|.+.+++. ....+.|+| ..+.++|.+||
T Consensus 79 ~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 79 FPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 788888876 345677888 47999999885
No 190
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=6.1e-06 Score=71.13 Aligned_cols=104 Identities=23% Similarity=0.289 Sum_probs=83.6
Q ss_pred CCccccccccccccc-cC-Cc-cEEE-EEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCC
Q 015527 266 PLVVTLTIHNAQFVF-QD-PR-KQLW-LFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNA 340 (405)
Q Consensus 266 p~v~~l~~~~~~~~~-~~-~~-~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~ 340 (405)
|.+.+.|..||+... .. .. |+++ |..+||. |.+..+.+++++..|+|++.++.+|++..+ .+...||+..
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p---~vAaqfgiqs-- 97 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEP---MVAAQFGVQS-- 97 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcch---hHHHHhCcCc--
Confidence 457888888887533 22 22 6655 5567887 999999999999999999999999999866 8999999975
Q ss_pred CcEEEEEeCCCccc-cCCCCCCHHHHHHHHHHHhcC
Q 015527 341 PRVIAYSARDAKKY-VLNGELTLSSIKSFGEEFLED 375 (405)
Q Consensus 341 ~p~i~i~~~~~~~y-~~~~~~~~~~l~~Fi~~~~~G 375 (405)
.|.++.+.. |... .|.|....+.|.+|++.++.-
T Consensus 98 IPtV~af~d-GqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 98 IPTVYAFKD-GQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred CCeEEEeeC-CcCccccCCCCcHHHHHHHHHHhcCh
Confidence 788887764 5544 478888888999999999865
No 191
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.22 E-value=1.4e-05 Score=63.37 Aligned_cols=98 Identities=7% Similarity=0.106 Sum_probs=75.5
Q ss_pred ccccccCCccEEE-EEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCC-c
Q 015527 276 AQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDA-K 352 (405)
Q Consensus 276 ~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~-~ 352 (405)
+......++++++ |+++||. |..+.+.+.+++.++.+++.|+.+|.+... ...+++.|++.. .|.+++++.+| .
T Consensus 13 ~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~V~~--iPt~v~~~~~G~~ 89 (142)
T cd02950 13 PEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYRVDG--IPHFVFLDREGNE 89 (142)
T ss_pred HHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcCCCC--CCEEEEECCCCCE
Confidence 3344455555544 6667887 999999999999999988889999887643 346788999975 78999987544 4
Q ss_pred cccCCCCCCHHHHHHHHHHHhcCc
Q 015527 353 KYVLNGELTLSSIKSFGEEFLEDK 376 (405)
Q Consensus 353 ~y~~~~~~~~~~l~~Fi~~~~~Gk 376 (405)
...+.|..+.+.|.++++.+++|.
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC
Confidence 455778888999999999999883
No 192
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.21 E-value=1.3e-05 Score=59.96 Aligned_cols=93 Identities=22% Similarity=0.257 Sum_probs=70.4
Q ss_pred ccccccccCCccEEEEEecCCC-cHHHHHHHHHHHHHhcC---cEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeC
Q 015527 274 HNAQFVFQDPRKQLWLFAPAYG-SDKVILTFEEVAKALKG---KLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR 349 (405)
Q Consensus 274 ~~~~~~~~~~~~~~i~f~~~~~-~~~~~~~~~~va~~~~~---~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~ 349 (405)
+++..+...+..++.++++||. |+...+.|.++++++++ .+.++.+|++... .+++.+++.. .|.+++++
T Consensus 7 ~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~I~~--~Pt~~l~~- 80 (104)
T cd03000 7 DSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS---SIASEFGVRG--YPTIKLLK- 80 (104)
T ss_pred hhhhhhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH---hHHhhcCCcc--ccEEEEEc-
Confidence 3444433333244556777887 99999999999999853 4889999998754 7889999975 78888885
Q ss_pred CCccccCCCCCCHHHHHHHHHHH
Q 015527 350 DAKKYVLNGELTLSSIKSFGEEF 372 (405)
Q Consensus 350 ~~~~y~~~~~~~~~~l~~Fi~~~ 372 (405)
++..+.+.|..+.++|.+|++++
T Consensus 81 ~~~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 81 GDLAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred CCCceeecCCCCHHHHHHHHHhh
Confidence 44566788889999999999875
No 193
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.21 E-value=1.2e-05 Score=69.04 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=68.6
Q ss_pred CCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcc-----------cHhHHHhCCCcccceEEEEe-CC-ee
Q 015527 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-----------EKDLAKEYNILAYPTLYLFV-AG-VR 139 (405)
Q Consensus 73 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~-----------~~~~~~~~~i~~~Pt~~~~~-~g-~~ 139 (405)
++.-|+.||.+.|++|+++.|.+..++++++ +.+..|+.|. +...++++||..+|++++++ ++ +.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 4689999999999999999999999999996 5565555542 23467899999999999998 43 33
Q ss_pred eeeecCCCCHHHHHHHHHhhh
Q 015527 140 QFQFFGERTRDVISAWVREKM 160 (405)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~~ 160 (405)
.---.|.++.++|.+-|....
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHH
Confidence 344459999999988877654
No 194
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.21 E-value=9.7e-06 Score=60.04 Aligned_cols=95 Identities=26% Similarity=0.361 Sum_probs=73.7
Q ss_pred ccccccccccccCCccEEEEEe-cCCC-cHHHHHHHHHHHHHh--cCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEE
Q 015527 270 TLTIHNAQFVFQDPRKQLWLFA-PAYG-SDKVILTFEEVAKAL--KGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIA 345 (405)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~i~f~-~~~~-~~~~~~~~~~va~~~--~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~ 345 (405)
.++..++......+.++++.|. ++|. |..+...++++++.+ .+.+.|+.+|++.. ..+++.+|+.. .|.++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~i~~--~Pt~~ 76 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN---NDLCSEYGVRG--YPTIK 76 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch---HHHHHhCCCCC--CCEEE
Confidence 3556667776777666656555 5565 999999999999999 57899999999874 48899999964 78888
Q ss_pred EEeCC-CccccCCCCCCHHHHHHHH
Q 015527 346 YSARD-AKKYVLNGELTLSSIKSFG 369 (405)
Q Consensus 346 i~~~~-~~~y~~~~~~~~~~l~~Fi 369 (405)
+++.+ .....+.|..+.+++.+|+
T Consensus 77 ~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 77 LFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred EEcCCCcccccCCCCcCHHHHHhhC
Confidence 88765 4556688888899888874
No 195
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.20 E-value=1.6e-05 Score=67.15 Aligned_cols=87 Identities=18% Similarity=0.378 Sum_probs=65.4
Q ss_pred CCCcEEEEEec-CCChhHhhhHHHHHHHHHHccC-CcEEEEEeCccc----------------------------HhHHH
Q 015527 72 KNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE----------------------------KDLAK 121 (405)
Q Consensus 72 ~~~~~~v~f~a-~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~~----------------------------~~~~~ 121 (405)
.++.++|.||+ +||+.|..+.+.+.++++++.. ++.++.|+++.. .++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 47889999995 8899999999999999999976 788888876532 34677
Q ss_pred hCCCc------ccceEEEEe-CCeeeeeecC----CCCHHHHHHHHHh
Q 015527 122 EYNIL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVRE 158 (405)
Q Consensus 122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~ 158 (405)
.||+. .+|+.++++ +|++...+.+ .++.+++.+.|..
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 88875 479999998 8876655443 3455666655543
No 196
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.18 E-value=8.3e-06 Score=63.06 Aligned_cols=71 Identities=15% Similarity=0.231 Sum_probs=47.9
Q ss_pred CCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhC---CCcccceEEEEe-CCeeeeeec
Q 015527 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY---NILAYPTLYLFV-AGVRQFQFF 144 (405)
Q Consensus 73 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~---~i~~~Pt~~~~~-~g~~~~~~~ 144 (405)
.+..++.|..+||+.|....|.+.++++..+ ++.+-.+..++++++..+| |..++|++++++ +|+...++.
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wg 115 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWG 115 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEE
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEc
Confidence 4567778999999999999999999999865 5666666667777776654 688999999997 666665554
No 197
>PHA02278 thioredoxin-like protein
Probab=98.17 E-value=1.8e-05 Score=58.67 Aligned_cols=89 Identities=10% Similarity=0.125 Sum_probs=66.4
Q ss_pred CChhHHHHHhccCCeEEEEEEcCCCCcc---HHHHHHHhc-cCCcceEEEe--c-----CHHHHhhcCCCCCCCCCeEEE
Q 015527 168 TTTDEAERILTVESKLVLGFLHDLEGME---SEELAAASK-LHSDVNFYQT--T-----SADVAEFFHIHPKSKRPALIF 236 (405)
Q Consensus 168 ~~~~~~~~~l~~~~~~~v~f~~~~~~~~---~~~~~~~a~-~~~~~~f~~~--~-----~~~l~~~~~~~~~~~~p~i~~ 236 (405)
++.+++.+.++.+++++|.|+++||+++ .+.+.++++ ......|+.+ . ...+++++++.. .|++++
T Consensus 2 ~~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~---iPT~i~ 78 (103)
T PHA02278 2 NSLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMS---TPVLIG 78 (103)
T ss_pred CCHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCcc---ccEEEE
Confidence 4678888888889999999999999994 456777763 3344555543 2 157999999994 999999
Q ss_pred eecCCCccccccCCCCHHHHHHHH
Q 015527 237 LHLEAGKATPFRHQFTRLAIANFV 260 (405)
Q Consensus 237 ~~~~~~~~~~y~g~~~~~~l~~fi 260 (405)
|+++. ......|..+.+.+.+|-
T Consensus 79 fk~G~-~v~~~~G~~~~~~l~~~~ 101 (103)
T PHA02278 79 YKDGQ-LVKKYEDQVTPMQLQELE 101 (103)
T ss_pred EECCE-EEEEEeCCCCHHHHHhhh
Confidence 99853 455677877777777663
No 198
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.16 E-value=1.6e-05 Score=56.98 Aligned_cols=76 Identities=21% Similarity=0.285 Sum_probs=56.3
Q ss_pred EEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccH----hHHHhCC--CcccceEEEEeCCeeeeeecCCCCH
Q 015527 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYN--ILAYPTLYLFVAGVRQFQFFGERTR 149 (405)
Q Consensus 76 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~----~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (405)
-++.|+.+||++|++....++++..++. ++.+..+|.+.++ ++.+..+ +.++|+++ .+|+.+ | ..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i----g--g~ 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI----G--GC 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE----c--CH
Confidence 3678999999999999999999988764 6888888887653 4544444 57899975 477432 2 44
Q ss_pred HHHHHHHHhhh
Q 015527 150 DVISAWVREKM 160 (405)
Q Consensus 150 ~~l~~~i~~~~ 160 (405)
+++.++++..+
T Consensus 73 ~~~~~~~~~~~ 83 (85)
T PRK11200 73 TDFEAYVKENL 83 (85)
T ss_pred HHHHHHHHHhc
Confidence 77777777655
No 199
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.16 E-value=2.7e-05 Score=58.72 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=81.8
Q ss_pred EEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHH---ccCCcEEEEEeCcccHhHHHhCCCcc--cceEEE
Q 015527 59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKM---LKGEADLVMVDAYLEKDLAKEYNILA--YPTLYL 133 (405)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~---~~~~v~~~~v~~~~~~~~~~~~~i~~--~Pt~~~ 133 (405)
.++|.++......++-+..++|+.+ ..-....+.+.++|++ +++++.|+.+|.++.....+.+|+.. .|.+.+
T Consensus 2 ~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i 79 (111)
T cd03072 2 REITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAI 79 (111)
T ss_pred cccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEE
Confidence 4678888888888877777777722 2346678899999999 99899999999999888999999987 899999
Q ss_pred Ee-CCeeeee-ecCCCCHHHHHHHHHhhhc
Q 015527 134 FV-AGVRQFQ-FFGERTRDVISAWVREKMT 161 (405)
Q Consensus 134 ~~-~g~~~~~-~~g~~~~~~l~~~i~~~~~ 161 (405)
.. ++..... +.+..+.+.|.+|+++.+.
T Consensus 80 ~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 80 DSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 98 3323444 6688999999999998764
No 200
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.15 E-value=2.8e-05 Score=57.28 Aligned_cols=89 Identities=18% Similarity=0.315 Sum_probs=72.5
Q ss_pred hhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCC-eeee
Q 015527 63 GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG-VRQF 141 (405)
Q Consensus 63 ~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g-~~~~ 141 (405)
.+.++..+..+++++|-|+.++|. .....|.++|+.+.+.+.|+.+. ++++++++++. -|++.+|+++ ....
T Consensus 7 ~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~~~~ 79 (97)
T cd02981 7 KEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEEEPV 79 (97)
T ss_pred HHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEEeCCcccCCc
Confidence 344666778889999999999987 46778999999998789998877 56788888876 4999999853 4567
Q ss_pred eecCCCCHHHHHHHHHh
Q 015527 142 QFFGERTRDVISAWVRE 158 (405)
Q Consensus 142 ~~~g~~~~~~l~~~i~~ 158 (405)
.|.|..+.+.|.+||..
T Consensus 80 ~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 80 EYDGEFTEESLVEFIKD 96 (97)
T ss_pred cCCCCCCHHHHHHHHHh
Confidence 79999999999999864
No 201
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=1.2e-05 Score=58.96 Aligned_cols=73 Identities=23% Similarity=0.370 Sum_probs=57.4
Q ss_pred hhHHHHH---cCCCcEEEEEec--------CCChhHhhhHHHHHHHHHHccCCcEEEEEeCccc-------HhHHHhCCC
Q 015527 64 KNFSEFM---GKNRNVMVMFYA--------NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-------KDLAKEYNI 125 (405)
Q Consensus 64 ~~~~~~~---~~~~~~~v~f~a--------~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~-------~~~~~~~~i 125 (405)
+.|++.+ .+++.++|+|++ +||+.|.+..|.+.+.-+....++.|+.|+..+- -.+....++
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~ 92 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGI 92 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCc
Confidence 4565555 456679999997 6999999999999999997777999999997543 234556666
Q ss_pred -cccceEEEEeC
Q 015527 126 -LAYPTLYLFVA 136 (405)
Q Consensus 126 -~~~Pt~~~~~~ 136 (405)
.++||+.-+.+
T Consensus 93 lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 93 LTAVPTLLRWKR 104 (128)
T ss_pred eeecceeeEEcC
Confidence 89999988874
No 202
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.13 E-value=1.2e-05 Score=60.95 Aligned_cols=84 Identities=13% Similarity=0.124 Sum_probs=66.5
Q ss_pred CccEEE-EEecCCC-cHHHHHHHHHHHHHhcC-cEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCccccCCCC
Q 015527 283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKG-KLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGE 359 (405)
Q Consensus 283 ~~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~-~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~~y~~~~~ 359 (405)
+.|+++ ++++||. |+...+.+.++++++++ ++.|+.+|++... .+++.+|+.. .|.+++++.+.....+.|.
T Consensus 24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~---~l~~~~~V~~--~Pt~~i~~~g~~~~~~~G~ 98 (111)
T cd02963 24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER---RLARKLGAHS--VPAIVGIINGQVTFYHDSS 98 (111)
T ss_pred CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH---HHHHHcCCcc--CCEEEEEECCEEEEEecCC
Confidence 345555 5667887 99999999999999986 5999999998754 7889999965 6888888754333446788
Q ss_pred CCHHHHHHHHHH
Q 015527 360 LTLSSIKSFGEE 371 (405)
Q Consensus 360 ~~~~~l~~Fi~~ 371 (405)
.+.+.|.+||++
T Consensus 99 ~~~~~l~~~i~~ 110 (111)
T cd02963 99 FTKQHVVDFVRK 110 (111)
T ss_pred CCHHHHHHHHhc
Confidence 899999999985
No 203
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.12 E-value=4.3e-05 Score=57.95 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=70.1
Q ss_pred CccccCChhHHHHHhccCCeEEEEEEcCCCCccH---HHHHHHhccCCcceEEEe---cCHHHHhhcCCCCCCCCCeEEE
Q 015527 163 GTYSITTTDEAERILTVESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIF 236 (405)
Q Consensus 163 ~~~~i~~~~~~~~~l~~~~~~~v~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~---~~~~l~~~~~~~~~~~~p~i~~ 236 (405)
.+..+++.+++.+.+.++..++|.|+.+||.++. +.+..+++...++.|+.+ ....+++++++.. .|++++
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~---vPt~l~ 81 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKV---LPTVIL 81 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCcc---CCEEEE
Confidence 4567788889999998889999999999998844 456667754556788876 4556899999995 999999
Q ss_pred eecCCCc-------cccccCCCCHHHHHHHH
Q 015527 237 LHLEAGK-------ATPFRHQFTRLAIANFV 260 (405)
Q Consensus 237 ~~~~~~~-------~~~y~g~~~~~~l~~fi 260 (405)
|+++... .....++++.+++..|+
T Consensus 82 fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 82 FKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 9976311 11112456778888776
No 204
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.10 E-value=2.4e-05 Score=58.95 Aligned_cols=74 Identities=20% Similarity=0.373 Sum_probs=50.8
Q ss_pred hhHHHHH----cCCCcEEEEEec-------CCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccH-------hHHH--hC
Q 015527 64 KNFSEFM----GKNRNVMVMFYA-------NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-------DLAK--EY 123 (405)
Q Consensus 64 ~~~~~~~----~~~~~~~v~f~a-------~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~-------~~~~--~~ 123 (405)
++|.+.+ .++++++|+|++ +||+.|....|.+++.-+...++..++.|...+.+ .... ++
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~ 85 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDL 85 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEccee
Confidence 4455555 356789999996 59999999999999988886667888877764322 2233 59
Q ss_pred CCcccceEEEEeCC
Q 015527 124 NILAYPTLYLFVAG 137 (405)
Q Consensus 124 ~i~~~Pt~~~~~~g 137 (405)
++.++||++-+..+
T Consensus 86 ~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 86 KLKGIPTLIRWETG 99 (119)
T ss_dssp ---SSSEEEECTSS
T ss_pred eeeecceEEEECCC
Confidence 99999999999866
No 205
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.06 E-value=4e-05 Score=56.32 Aligned_cols=95 Identities=16% Similarity=0.200 Sum_probs=73.0
Q ss_pred CCcEEcChhhHHHHHcCCCcEEEEEecCCChh---HhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEE
Q 015527 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYW---SKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132 (405)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~---C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~ 132 (405)
.....++.++++..+..+...++.|. ..|.. |....=.+-++.+.+++.+..+.|.-..+..+..+||+..+|+++
T Consensus 9 ~g~~~vd~~~ld~~l~~~~~~vlf~~-gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLv 87 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLAAPGDAVLFFA-GDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALV 87 (107)
T ss_dssp -TEEEE-CCCHHHHHHCCSCEEEEES-S-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEE
T ss_pred cCCeeechhhHHHHHhCCCcEEEEEC-CCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEE
Confidence 45677889999999988777666554 44444 444444778888888888888888877889999999999999999
Q ss_pred EEeCCeeeeeecCCCCHHH
Q 015527 133 LFVAGVRQFQFFGERTRDV 151 (405)
Q Consensus 133 ~~~~g~~~~~~~g~~~~~~ 151 (405)
++++|+......|.++.++
T Consensus 88 f~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 88 FFRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp EEETTEEEEEEESSSTHHH
T ss_pred EEECCEEEEEecCeecccc
Confidence 9999988888999888764
No 206
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.04 E-value=2.2e-05 Score=58.08 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=63.4
Q ss_pred cEEEEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcC-CcchhhhhhhhcCCCCCCCcEEEEEeCCCccccCCCCCCH
Q 015527 285 KQLWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMN-SEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTL 362 (405)
Q Consensus 285 ~~~i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~-~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~~y~~~~~~~~ 362 (405)
-++.++++||. |+...+.|+++|+++++ +.|+.+|.+ ... .+++.|++.. .|.+.+++.+ ....+.|..+.
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~---~l~~~~~V~~--~PT~~lf~~g-~~~~~~G~~~~ 93 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKP---SLLSRYGVVG--FPTILLFNST-PRVRYNGTRTL 93 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCH---HHHHhcCCee--cCEEEEEcCC-ceeEecCCCCH
Confidence 34446778887 99999999999999975 788899987 433 7889999965 7888888755 66678899999
Q ss_pred HHHHHHH
Q 015527 363 SSIKSFG 369 (405)
Q Consensus 363 ~~l~~Fi 369 (405)
+.|.+||
T Consensus 94 ~~l~~f~ 100 (100)
T cd02999 94 DSLAAFY 100 (100)
T ss_pred HHHHhhC
Confidence 9999985
No 207
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=98.02 E-value=6.1e-05 Score=53.88 Aligned_cols=88 Identities=18% Similarity=0.245 Sum_probs=63.7
Q ss_pred cEEEEEecCCC---cHHHHHHHHHHHHHhc------C--cEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeC-CCc
Q 015527 285 KQLWLFAPAYG---SDKVILTFEEVAKALK------G--KLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAK 352 (405)
Q Consensus 285 ~~~i~f~~~~~---~~~~~~~~~~va~~~~------~--~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~-~~~ 352 (405)
|.+++|.+.++ .+...+.++.+|.++- + ......+++++.. ...+.+..+++. .-|.+++.+. +++
T Consensus 16 p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~-tdsLRDf~nL~d-~~P~LviLDip~r~ 93 (116)
T cd03071 16 PCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDM-TDSLRDYTNLPE-AAPLLTILDMSARA 93 (116)
T ss_pred ceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchH-HHHHHHhcCCCc-cCceEEEEeccccc
Confidence 77889997654 5677788888887652 1 1333344455442 556667778865 4788888888 888
Q ss_pred cccCCC-CCCHHHHHHHHHHHhc
Q 015527 353 KYVLNG-ELTLSSIKSFGEEFLE 374 (405)
Q Consensus 353 ~y~~~~-~~~~~~l~~Fi~~~~~ 374 (405)
+|.++. ++|++.+.+|+.+++.
T Consensus 94 ~~v~~~eeIT~e~~~~fv~~ylA 116 (116)
T cd03071 94 KYVMDVEEITPAIVEAFVSDFLA 116 (116)
T ss_pred eEeCchHhcCHHHHHHHHHHhhC
Confidence 898865 8999999999999863
No 208
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.00 E-value=4.3e-05 Score=65.82 Aligned_cols=80 Identities=14% Similarity=0.254 Sum_probs=59.6
Q ss_pred CCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEE--e----------------C---------------------
Q 015527 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV--D----------------A--------------------- 113 (405)
Q Consensus 73 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v--~----------------~--------------------- 113 (405)
++.+++.|.-+.|++|+++++++.++.+. ++.+..+ . |
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 46789999999999999999998877542 2222211 1 1
Q ss_pred -----cccHhHHHhCCCcccceEEEEeCCeeeeeecCCCCHHHHHHHHHhh
Q 015527 114 -----YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (405)
Q Consensus 114 -----~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (405)
+++..+++++||+++|+++ +.+|+. ..|..+.+.|.++|.+.
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~---~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTL---VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCeE---eeCCCCHHHHHHHHHHc
Confidence 2234678899999999998 678843 48999999999998753
No 209
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.99 E-value=5.1e-05 Score=56.74 Aligned_cols=88 Identities=11% Similarity=0.100 Sum_probs=66.5
Q ss_pred hHHHHHhccCCeEEEEEEcCCCCccHHHHH------HHh-ccCCcceEEEec-------CHHHHhhcCCCCCCCCCeEEE
Q 015527 171 DEAERILTVESKLVLGFLHDLEGMESEELA------AAS-KLHSDVNFYQTT-------SADVAEFFHIHPKSKRPALIF 236 (405)
Q Consensus 171 ~~~~~~l~~~~~~~v~f~~~~~~~~~~~~~------~~a-~~~~~~~f~~~~-------~~~l~~~~~~~~~~~~p~i~~ 236 (405)
+.+.+.++++.+++|.|+.+||.++..... .++ .+.+++.++.+. ...++++++++. .|++++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~---~Pti~~ 78 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFG---PPTYLF 78 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCC---CCEEEE
Confidence 466777888899999999999998665432 334 334467766553 357888999984 999999
Q ss_pred eec-CCCccccccCCCCHHHHHHHHh
Q 015527 237 LHL-EAGKATPFRHQFTRLAIANFVT 261 (405)
Q Consensus 237 ~~~-~~~~~~~y~g~~~~~~l~~fi~ 261 (405)
|++ ++.....+.|..+.+++.++|+
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHhC
Confidence 996 4556778889999999988873
No 210
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.98 E-value=4.8e-05 Score=52.54 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=46.1
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhC----CCcccceEEEEeCCeeeeeecCCCCHHHH
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY----NILAYPTLYLFVAGVRQFQFFGERTRDVI 152 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~----~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l 152 (405)
++.|+++||++|+...+.+.+. ++.+..++++.++...+.+ ++.++|++++ +|+ ...| .+...|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g-~~~~~l 69 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSG-FRPDKL 69 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEec-CCHHHH
Confidence 5679999999999988777652 4667778887765544433 6889999865 442 3333 456666
Q ss_pred HHH
Q 015527 153 SAW 155 (405)
Q Consensus 153 ~~~ 155 (405)
.++
T Consensus 70 ~~~ 72 (73)
T cd02976 70 RAL 72 (73)
T ss_pred Hhh
Confidence 654
No 211
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.96 E-value=5.6e-05 Score=71.13 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=79.2
Q ss_pred CCcccccccccccccc---CCccE-EEEEecCCC-cHHHHHHHHHHHHHhcCc-EEEEEEEcCCcchhhhhhhhcCCCCC
Q 015527 266 PLVVTLTIHNAQFVFQ---DPRKQ-LWLFAPAYG-SDKVILTFEEVAKALKGK-LLHVYVEMNSEGVGRRVSQEFGVSGN 339 (405)
Q Consensus 266 p~v~~l~~~~~~~~~~---~~~~~-~i~f~~~~~-~~~~~~~~~~va~~~~~~-~~f~~id~~~~~~~~~~~~~~gi~~~ 339 (405)
+.|.+++..|++.+.. .+.++ +.||++||. |+.+.+.|.++|.+++++ +.|+.+|++... ....++.|+|..
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~-~~~~~~~~~I~~- 428 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ-KEFAKQELQLGS- 428 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc-cHHHHHHcCCCc-
Confidence 4688899999998874 34454 447778888 999999999999999875 899999998642 112236899974
Q ss_pred CCcEEEEEeCC-CccccCC-CCCCHHHHHHHHHHH
Q 015527 340 APRVIAYSARD-AKKYVLN-GELTLSSIKSFGEEF 372 (405)
Q Consensus 340 ~~p~i~i~~~~-~~~y~~~-~~~~~~~l~~Fi~~~ 372 (405)
.|.++++..+ .....|+ +..+.++|..||+.+
T Consensus 429 -~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 429 -FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred -cceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 7888888763 2344576 489999999999864
No 212
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.96 E-value=0.0003 Score=54.61 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=81.2
Q ss_pred CcEEcChhhHH-HHHcCCCcEEEEEecC--CCh-hH-hhhHHHHHHHHHHccCC-cEEEEEeCcccHhHHHhCCCc--cc
Q 015527 57 DVVSLNGKNFS-EFMGKNRNVMVMFYAN--WCY-WS-KKLAPEFAAAAKMLKGE-ADLVMVDAYLEKDLAKEYNIL--AY 128 (405)
Q Consensus 57 ~~~~l~~~~~~-~~~~~~~~~~v~f~a~--~C~-~C-~~~~~~~~~~~~~~~~~-v~~~~v~~~~~~~~~~~~~i~--~~ 128 (405)
.+++|+.++.- ..=.+++..+|-|-.. .|. .+ ......+.++|+.++++ +.|+.+|.++.+.+.+.||+. ++
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~ 82 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGY 82 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCC
Confidence 56778766653 3344456666666542 232 23 34577899999999998 999999999999999999995 49
Q ss_pred ceEEEEeCCeeeee-ecCCCCHHHHHHHHHhhhcCCc
Q 015527 129 PTLYLFVAGVRQFQ-FFGERTRDVISAWVREKMTLGT 164 (405)
Q Consensus 129 Pt~~~~~~g~~~~~-~~g~~~~~~l~~~i~~~~~~~~ 164 (405)
|++++++..+..+. +.|..+.+.+.+|+.+.+...+
T Consensus 83 P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 83 PAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 99999983322443 7799999999999999986654
No 213
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.94 E-value=0.00012 Score=56.27 Aligned_cols=105 Identities=10% Similarity=0.081 Sum_probs=77.4
Q ss_pred cCCCCccccccccccccccCCccEEEEEecCC----CcHHHHHHHHHHHHHhcC-cEEEEEEEcCCcchhhhhhhhcCCC
Q 015527 263 TKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAY----GSDKVILTFEEVAKALKG-KLLHVYVEMNSEGVGRRVSQEFGVS 337 (405)
Q Consensus 263 ~~~p~v~~l~~~~~~~~~~~~~~~~i~f~~~~----~~~~~~~~~~~va~~~~~-~~~f~~id~~~~~~~~~~~~~~gi~ 337 (405)
+-.|.+.. .+...........++|+.... +.....-.+.++|++|.+ ++.|+.+|.+.++ .++..||+.
T Consensus 17 ~g~~~~~~---~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~---~LA~~fgV~ 90 (132)
T PRK11509 17 RGWTPVSE---SRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE---AIGDRFGVF 90 (132)
T ss_pred cCCCcccc---ccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH---HHHHHcCCc
Confidence 44455444 555555555444555555332 245677789999999984 6999999999865 999999997
Q ss_pred CCCCcEEEEEeCCCccccCCCCCCHHHHHHHHHHHhcC
Q 015527 338 GNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLED 375 (405)
Q Consensus 338 ~~~~p~i~i~~~~~~~y~~~~~~~~~~l~~Fi~~~~~G 375 (405)
. .|++++++.+...-.+.|..+.+.+.+||+.+++-
T Consensus 91 s--iPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 91 R--FPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred c--CCEEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 5 79999998644445678888999999999998865
No 214
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.94 E-value=9.9e-05 Score=55.51 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=72.3
Q ss_pred EcChhhHHHHHcCCCcEEEEEec---CCChhHhhhHHHHHHHHHHcc-CCcEEEEEeCcccHhHHHhCCCcc----cceE
Q 015527 60 SLNGKNFSEFMGKNRNVMVMFYA---NWCYWSKKLAPEFAAAAKMLK-GEADLVMVDAYLEKDLAKEYNILA----YPTL 131 (405)
Q Consensus 60 ~l~~~~~~~~~~~~~~~~v~f~a---~~C~~C~~~~~~~~~~~~~~~-~~v~~~~v~~~~~~~~~~~~~i~~----~Pt~ 131 (405)
.+|.++..... ..+..++.+-. ..-..-....+.+.++|+.++ +++.|+.+|.++.....+.||+.. .|++
T Consensus 3 ~~~~en~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~ 81 (111)
T cd03073 3 HRTKDNRAQFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVV 81 (111)
T ss_pred eeccchHHHhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEE
Confidence 45666666664 23334443322 222344667889999999999 699999999999888999999984 9999
Q ss_pred EEEe-CCeeeeeecCCC-CHHHHHHHHHhh
Q 015527 132 YLFV-AGVRQFQFFGER-TRDVISAWVREK 159 (405)
Q Consensus 132 ~~~~-~g~~~~~~~g~~-~~~~l~~~i~~~ 159 (405)
.+++ ++ ......+.. +.+.|.+|+++.
T Consensus 82 ~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 82 AIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred EEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 9988 44 444457778 999999999864
No 215
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.91 E-value=8.2e-05 Score=54.77 Aligned_cols=85 Identities=16% Similarity=0.299 Sum_probs=65.9
Q ss_pred cCCccEEEE-EecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCccccCCC
Q 015527 281 QDPRKQLWL-FAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNG 358 (405)
Q Consensus 281 ~~~~~~~i~-f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~~y~~~~ 358 (405)
..+.+++++ +.++|. |....+.++++++++.+++.+..+|.+..+ ++.+.+++.. .|.+++++.+.....+.|
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~---~l~~~~~v~~--vPt~~i~~~g~~v~~~~g 85 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ---EIAEAAGIMG--TPTVQFFKDKELVKEISG 85 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH---HHHHHCCCee--ccEEEEEECCeEEEEEeC
Confidence 344455554 446776 899999999999999988999999998754 7889999964 788888875444455778
Q ss_pred CCCHHHHHHHHH
Q 015527 359 ELTLSSIKSFGE 370 (405)
Q Consensus 359 ~~~~~~l~~Fi~ 370 (405)
..+.+++.+|++
T Consensus 86 ~~~~~~~~~~l~ 97 (97)
T cd02949 86 VKMKSEYREFIE 97 (97)
T ss_pred CccHHHHHHhhC
Confidence 888888888863
No 216
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.89 E-value=0.00021 Score=52.20 Aligned_cols=91 Identities=14% Similarity=0.220 Sum_probs=64.6
Q ss_pred ChhhHHHHHcC--CCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHh----HHHhCCCc-ccceEEEE
Q 015527 62 NGKNFSEFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNIL-AYPTLYLF 134 (405)
Q Consensus 62 ~~~~~~~~~~~--~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i~-~~Pt~~~~ 134 (405)
+.+++++++.. .++++|.=.++.|+-+......|++..+...+++.++.+|.-++++ ++.+|||. .-|.++++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence 45778888754 6788887789999999999999999999887669999999988865 57889996 47999999
Q ss_pred eCCeeeeeec-CCCCHHHH
Q 015527 135 VAGVRQFQFF-GERTRDVI 152 (405)
Q Consensus 135 ~~g~~~~~~~-g~~~~~~l 152 (405)
++|+.+..-. +..+.+.|
T Consensus 86 ~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 86 KNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp ETTEEEEEEEGGG-SHHHH
T ss_pred ECCEEEEECccccCCHHhc
Confidence 9997765433 45666554
No 217
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.88 E-value=8.1e-05 Score=55.37 Aligned_cols=93 Identities=10% Similarity=0.104 Sum_probs=69.3
Q ss_pred ccccccccccCCccE-EEEEecCCC-cHHHHHHHHHHHHHhcCc-EEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEe
Q 015527 272 TIHNAQFVFQDPRKQ-LWLFAPAYG-SDKVILTFEEVAKALKGK-LLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSA 348 (405)
Q Consensus 272 ~~~~~~~~~~~~~~~-~i~f~~~~~-~~~~~~~~~~va~~~~~~-~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~ 348 (405)
+.+++..+...+.+. +.++++||. |+...+.+.+++.+++++ +.|+.+|.+ . ..+++.|++.. .|.+++++
T Consensus 6 ~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~---~~~~~~~~v~~--~Pt~~~~~ 79 (102)
T cd02948 6 NQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T---IDTLKRYRGKC--EPTFLFYK 79 (102)
T ss_pred CHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C---HHHHHHcCCCc--CcEEEEEE
Confidence 445556666555554 456778887 999999999999999854 789999988 2 26789999975 68888887
Q ss_pred CCCccccCCCCCCHHHHHHHHHH
Q 015527 349 RDAKKYVLNGELTLSSIKSFGEE 371 (405)
Q Consensus 349 ~~~~~y~~~~~~~~~~l~~Fi~~ 371 (405)
.+.......| .+.+.+.++|+.
T Consensus 80 ~g~~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 80 NGELVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred CCEEEEEEec-CChHHHHHHHhh
Confidence 5444455666 488889998875
No 218
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.87 E-value=0.00012 Score=55.42 Aligned_cols=87 Identities=11% Similarity=0.127 Sum_probs=67.5
Q ss_pred CCccEEEEE-ecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCC--ccccCC
Q 015527 282 DPRKQLWLF-APAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDA--KKYVLN 357 (405)
Q Consensus 282 ~~~~~~i~f-~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~--~~y~~~ 357 (405)
++.+.+++| .+||. |+.+.+.+++++.++ +++.|..+|.+..+ .+...||+.. .|.+++++.++ ....+.
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~---~l~~~~~v~~--vPt~~i~~~g~~~~~~~~~ 94 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDK---EKAEKYGVER--VPTTIFLQDGGKDGGIRYY 94 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCH---HHHHHcCCCc--CCEEEEEeCCeecceEEEE
Confidence 344455554 57876 999999999999987 67999999998754 8999999975 68999987522 223567
Q ss_pred CCCCHHHHHHHHHHHhc
Q 015527 358 GELTLSSIKSFGEEFLE 374 (405)
Q Consensus 358 ~~~~~~~l~~Fi~~~~~ 374 (405)
|..+..++.+||+++++
T Consensus 95 G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 95 GLPAGYEFASLIEDIVR 111 (113)
T ss_pred ecCchHHHHHHHHHHHh
Confidence 77888999999999874
No 219
>PTZ00062 glutaredoxin; Provisional
Probab=97.87 E-value=0.00059 Score=57.11 Aligned_cols=162 Identities=11% Similarity=0.076 Sum_probs=98.3
Q ss_pred cCChhHHHHHhccC-CeEEEEEEcCCCCc---cHHHHHHHhccCCcceEEEecCHHHHhhcCCCCCCCCCeEEEeecCCC
Q 015527 167 ITTTDEAERILTVE-SKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAG 242 (405)
Q Consensus 167 i~~~~~~~~~l~~~-~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~~~~~~~~p~i~~~~~~~~ 242 (405)
..+.+++.++++++ ...++.|.++||.+ ..+.+..+++....+.|+.+... +++.. .|++++|+++.
T Consensus 3 ~~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----~~V~~---vPtfv~~~~g~- 73 (204)
T PTZ00062 3 FIKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----DANNE---YGVFEFYQNSQ- 73 (204)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----cCccc---ceEEEEEECCE-
Confidence 45778888888765 66777777999988 45556777766688999988754 88884 89999999764
Q ss_pred ccccccCCCCHHHHHHHHhccCCCCccccccccccccccCCccEEEEEec------CCC-cHHHHHHHHHHHHHhcCcEE
Q 015527 243 KATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAP------AYG-SDKVILTFEEVAKALKGKLL 315 (405)
Q Consensus 243 ~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~i~f~~------~~~-~~~~~~~~~~va~~~~~~~~ 315 (405)
....+.|- +...|..++..+.-+.-..-.......+.+.. | +++|.- .|. |.+....|++. ++.
T Consensus 74 ~i~r~~G~-~~~~~~~~~~~~~~~~~~~~~~~~v~~li~~~-~-Vvvf~Kg~~~~p~C~~C~~~k~~L~~~------~i~ 144 (204)
T PTZ00062 74 LINSLEGC-NTSTLVSFIRGWAQKGSSEDTVEKIERLIRNH-K-ILLFMKGSKTFPFCRFSNAVVNMLNSS------GVK 144 (204)
T ss_pred EEeeeeCC-CHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-C-EEEEEccCCCCCCChhHHHHHHHHHHc------CCC
Confidence 34455554 56778887776554322221122233444443 3 445543 333 55665555532 355
Q ss_pred EEEEEcCCcc-hhhhhhhhcCCCCCCCcEEEEEe
Q 015527 316 HVYVEMNSEG-VGRRVSQEFGVSGNAPRVIAYSA 348 (405)
Q Consensus 316 f~~id~~~~~-~~~~~~~~~gi~~~~~p~i~i~~ 348 (405)
|..+|..... ....+.+.-|.+ ..|.+.|-.
T Consensus 145 y~~~DI~~d~~~~~~l~~~sg~~--TvPqVfI~G 176 (204)
T PTZ00062 145 YETYNIFEDPDLREELKVYSNWP--TYPQLYVNG 176 (204)
T ss_pred EEEEEcCCCHHHHHHHHHHhCCC--CCCeEEECC
Confidence 6666766542 122333333432 368887743
No 220
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.85 E-value=2.8e-05 Score=58.25 Aligned_cols=67 Identities=6% Similarity=0.040 Sum_probs=54.7
Q ss_pred cEEE-EEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCccccC
Q 015527 285 KQLW-LFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVL 356 (405)
Q Consensus 285 ~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~~y~~ 356 (405)
++++ ++++||. |+.+.+.+.++|.++.+.+.|+.+|.++.+ .+...||+.. .|.+++++.+......
T Consensus 16 ~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~---~la~~~~V~~--iPTf~~fk~G~~v~~~ 84 (114)
T cd02954 16 VVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP---DFNKMYELYD--PPTVMFFFRNKHMKID 84 (114)
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH---HHHHHcCCCC--CCEEEEEECCEEEEEE
Confidence 4444 7778988 999999999999999999999999999855 8999999976 7898888763333333
No 221
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.84 E-value=7.8e-05 Score=62.90 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=54.8
Q ss_pred CCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEE--Ee--------------------------------------
Q 015527 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM--VD-------------------------------------- 112 (405)
Q Consensus 73 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~--v~-------------------------------------- 112 (405)
++..++.|..+.|++|+++.+.+.+. .+++.+.. +.
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPN----ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhc----cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 57899999999999999999988761 12222221 11
Q ss_pred -----CcccHhHHHhCCCcccceEEEEeCCeeeeeecCCCCHHHHHHHH
Q 015527 113 -----AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (405)
Q Consensus 113 -----~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (405)
.+++..+++++||.++|+++ +.+|+. ..|..+.+.|.+||
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 12234677889999999997 778843 57888888887764
No 222
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.84 E-value=0.00019 Score=53.43 Aligned_cols=88 Identities=17% Similarity=0.154 Sum_probs=63.4
Q ss_pred ChhHHHHHhcc--CCeEEEEEEcCCCCccH---HHHHHHhccCCcceEEEec---C---HHHHhhcCCCCCCCCCeEEEe
Q 015527 169 TTDEAERILTV--ESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQTT---S---ADVAEFFHIHPKSKRPALIFL 237 (405)
Q Consensus 169 ~~~~~~~~l~~--~~~~~v~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~~---~---~~l~~~~~~~~~~~~p~i~~~ 237 (405)
+.++++..+.. +++++|.|+++||+++. +.+..+++....+.|+.++ + .+++++++++. .|++++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~---~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIE---VPHFLFY 78 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCc---CCEEEEE
Confidence 56777777754 68999999999999854 5566666444677887662 2 26889999984 9999999
Q ss_pred ecCCCccccccCCCCHHHHHHHHh
Q 015527 238 HLEAGKATPFRHQFTRLAIANFVT 261 (405)
Q Consensus 238 ~~~~~~~~~y~g~~~~~~l~~fi~ 261 (405)
+++. ....+.|. ...+|.+-+.
T Consensus 79 ~~G~-~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 79 KDGE-KIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred eCCe-EEEEEeCC-CHHHHHHHHH
Confidence 7653 45677774 4566666554
No 223
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.79 E-value=0.00019 Score=70.64 Aligned_cols=91 Identities=16% Similarity=0.272 Sum_probs=71.2
Q ss_pred cChhhHHHHHcCCCcEEE-EEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCee
Q 015527 61 LNGKNFSEFMGKNRNVMV-MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (405)
Q Consensus 61 l~~~~~~~~~~~~~~~~v-~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 139 (405)
++.+..+.+-.=++++-| .|.+++|++|......+++++...+ +|..-.+|..+.++++++|+|.++|++++ ||+.
T Consensus 463 l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~ 539 (555)
T TIGR03143 463 LGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQ 539 (555)
T ss_pred CCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEEEE--CCEE
Confidence 334433333332456544 5689999999999999999999876 69999999999999999999999999866 5633
Q ss_pred eeeecCCCCHHHHHHHH
Q 015527 140 QFQFFGERTRDVISAWV 156 (405)
Q Consensus 140 ~~~~~g~~~~~~l~~~i 156 (405)
.+.|..+.+++.+||
T Consensus 540 --~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 540 --VYFGKKTIEEMLELI 554 (555)
T ss_pred --EEeeCCCHHHHHHhh
Confidence 356888999998886
No 224
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.79 E-value=0.00016 Score=47.85 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=41.1
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHH----hCCCcccceEEEEeCCe
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK----EYNILAYPTLYLFVAGV 138 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~----~~~i~~~Pt~~~~~~g~ 138 (405)
++.|+.+||++|+.....|++ . ++.+-.+|++.+++..+ ..|..++|++++ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~----~--~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE----K--GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH----T--TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHH----c--CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence 577999999999999887733 2 57888888888754433 349999999976 663
No 225
>PLN02309 5'-adenylylsulfate reductase
Probab=97.77 E-value=0.00016 Score=67.98 Aligned_cols=102 Identities=16% Similarity=0.232 Sum_probs=78.6
Q ss_pred CCcccccccccccccc---CCcc-EEEEEecCCC-cHHHHHHHHHHHHHhcCc-EEEEEEEcC-Ccchhhhhhh-hcCCC
Q 015527 266 PLVVTLTIHNAQFVFQ---DPRK-QLWLFAPAYG-SDKVILTFEEVAKALKGK-LLHVYVEMN-SEGVGRRVSQ-EFGVS 337 (405)
Q Consensus 266 p~v~~l~~~~~~~~~~---~~~~-~~i~f~~~~~-~~~~~~~~~~va~~~~~~-~~f~~id~~-~~~~~~~~~~-~~gi~ 337 (405)
+.+..++.+++..+.. .+.+ ++.||++||. |+.+...|.++|.++.+. +.|+.+|++ ... .++. .|+|.
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~---~la~~~~~I~ 421 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQK---EFAKQELQLG 421 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcch---HHHHhhCCCc
Confidence 4677889999888763 3444 4557778888 999999999999999864 999999998 433 6665 68997
Q ss_pred CCCCcEEEEEeCC-CccccCCC-CCCHHHHHHHHHHH
Q 015527 338 GNAPRVIAYSARD-AKKYVLNG-ELTLSSIKSFGEEF 372 (405)
Q Consensus 338 ~~~~p~i~i~~~~-~~~y~~~~-~~~~~~l~~Fi~~~ 372 (405)
. .|.+.++..+ .....|.+ ..+.++|.+||+.+
T Consensus 422 ~--~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 422 S--FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred e--eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 4 7888888763 33445764 78999999999875
No 226
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.76 E-value=0.00038 Score=51.51 Aligned_cols=77 Identities=21% Similarity=0.294 Sum_probs=67.2
Q ss_pred ChhhHHHHH--cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCe
Q 015527 62 NGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (405)
Q Consensus 62 ~~~~~~~~~--~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 138 (405)
++...++.+ ...+.+++-|-.+|-+.|.++...+.++++...+-..++-+|.++-+++.+-|++...|++.+|-+++
T Consensus 10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~k 88 (142)
T KOG3414|consen 10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNK 88 (142)
T ss_pred cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCc
Confidence 345666666 34578999999999999999999999999999887888899999999999999999999999998664
No 227
>PTZ00051 thioredoxin; Provisional
Probab=97.74 E-value=0.00022 Score=52.56 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=65.4
Q ss_pred ccccCChhHHHHHhccCCeEEEEEEcCCCCccH---HHHHHHhccCCcceEEEe---cCHHHHhhcCCCCCCCCCeEEEe
Q 015527 164 TYSITTTDEAERILTVESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFL 237 (405)
Q Consensus 164 ~~~i~~~~~~~~~l~~~~~~~v~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~---~~~~l~~~~~~~~~~~~p~i~~~ 237 (405)
+..+.+.+++...++.++.+++.|+.+||.++. +.+..+++...++.|+.+ .+..+++++++.. .|++++|
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~---~Pt~~~~ 78 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITS---MPTFKVF 78 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCce---eeEEEEE
Confidence 456788899999999999999999999999854 445666654556777765 3457889999984 9999999
Q ss_pred ecCCCccccccCCCCHHHHH
Q 015527 238 HLEAGKATPFRHQFTRLAIA 257 (405)
Q Consensus 238 ~~~~~~~~~y~g~~~~~~l~ 257 (405)
+++. ....+.|. ..++|.
T Consensus 79 ~~g~-~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 79 KNGS-VVDTLLGA-NDEALK 96 (98)
T ss_pred eCCe-EEEEEeCC-CHHHhh
Confidence 8653 44566664 444443
No 228
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.73 E-value=0.00036 Score=54.55 Aligned_cols=87 Identities=8% Similarity=-0.027 Sum_probs=64.2
Q ss_pred cEEE-EEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCC-ccccCCC---
Q 015527 285 KQLW-LFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDA-KKYVLNG--- 358 (405)
Q Consensus 285 ~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~-~~y~~~~--- 358 (405)
++++ |+++||. |+.+.+.|.++|+++++...|+.+|.++.+ .+.+.|++.. .+|.+.+++.+. ......|
T Consensus 25 lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~---dla~~y~I~~-~~t~~~ffk~g~~~vd~~tG~~~ 100 (142)
T PLN00410 25 LVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVP---DFNTMYELYD-PCTVMFFFRNKHIMIDLGTGNNN 100 (142)
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCH---HHHHHcCccC-CCcEEEEEECCeEEEEEeccccc
Confidence 4444 6778888 999999999999999999999999999854 9999999973 466776776532 2233444
Q ss_pred -----CCCHHHHHHHHHHHhcC
Q 015527 359 -----ELTLSSIKSFGEEFLED 375 (405)
Q Consensus 359 -----~~~~~~l~~Fi~~~~~G 375 (405)
..+.+++.+=++.++.|
T Consensus 101 k~~~~~~~k~~l~~~i~~~~~~ 122 (142)
T PLN00410 101 KINWALKDKQEFIDIVETVYRG 122 (142)
T ss_pred ccccccCCHHHHHHHHHHHHHH
Confidence 35666766666665544
No 229
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=97.73 E-value=0.00018 Score=51.25 Aligned_cols=83 Identities=11% Similarity=0.169 Sum_probs=62.3
Q ss_pred cccCChhHHHHHhccCCeEEEEEEcCCCCccHHHHHHHh-ccCCcceEEEecCHHHHhhcCCCCCCCCCeEEEeecC-CC
Q 015527 165 YSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLE-AG 242 (405)
Q Consensus 165 ~~i~~~~~~~~~l~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~~~~~~~~p~i~~~~~~-~~ 242 (405)
+++.+.+++.. ++.++..+|+||.+..++.+..|..+| .++.+|.|+....+.. ...... .+.+++|++. ..
T Consensus 2 kef~~~~eL~~-id~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~G~~~-~~~~~~----~~~~i~frp~~~~ 75 (91)
T cd03070 2 KEFRNLDELNN-VDRSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGFGDVT-KPERPP----GDNIIYFPPGHNA 75 (91)
T ss_pred ceecCHHHHHh-hCcCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEecccc-ccccCC----CCCeEEECCCCCC
Confidence 45677778877 777888999999999999999999988 6889999998776544 222222 2556667765 55
Q ss_pred ccccccCCCCH
Q 015527 243 KATPFRHQFTR 253 (405)
Q Consensus 243 ~~~~y~g~~~~ 253 (405)
....|.|+++.
T Consensus 76 ~~~~y~G~~tn 86 (91)
T cd03070 76 PDMVYLGSLTN 86 (91)
T ss_pred CceEEccCCCC
Confidence 56889999753
No 230
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.71 E-value=0.00031 Score=50.75 Aligned_cols=85 Identities=18% Similarity=0.290 Sum_probs=63.5
Q ss_pred ccCCccEEE-EEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCccccCC
Q 015527 280 FQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLN 357 (405)
Q Consensus 280 ~~~~~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~~y~~~ 357 (405)
.....+.++ ++.+++. |....+.+++++++ .+++.|+.+|++... .+++.+++.. .|.+++++.+.....+.
T Consensus 7 ~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~---~~~~~~~v~~--~P~~~~~~~g~~~~~~~ 80 (93)
T cd02947 7 IKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENP---ELAEEYGVRS--IPTFLFFKNGKEVDRVV 80 (93)
T ss_pred HhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCCh---hHHHhcCccc--ccEEEEEECCEEEEEEe
Confidence 333345444 4555665 88999999999998 677999999999744 7889999965 78888887654455567
Q ss_pred CCCCHHHHHHHHH
Q 015527 358 GELTLSSIKSFGE 370 (405)
Q Consensus 358 ~~~~~~~l~~Fi~ 370 (405)
|..+.+.|.+||+
T Consensus 81 g~~~~~~l~~~i~ 93 (93)
T cd02947 81 GADPKEELEEFLE 93 (93)
T ss_pred cCCCHHHHHHHhC
Confidence 7777888988873
No 231
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.70 E-value=0.0003 Score=61.40 Aligned_cols=82 Identities=15% Similarity=0.200 Sum_probs=59.7
Q ss_pred CCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeC----------------c----------------------
Q 015527 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA----------------Y---------------------- 114 (405)
Q Consensus 73 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~----------------~---------------------- 114 (405)
.+.+++.|.-+.|++|+++++.+..+.+. ++|.+..+-. .
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 35688899999999999999988776553 1233322210 0
Q ss_pred ------------ccHhHHHhCCCcccceEEEEe-CCeeeeeecCCCCHHHHHHHHH
Q 015527 115 ------------LEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVR 157 (405)
Q Consensus 115 ------------~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~ 157 (405)
++..+.+++||+++|++++-+ +| .+....|....++|.+++.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence 112356779999999999887 57 6778899999999988764
No 232
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.70 E-value=0.00019 Score=52.73 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=58.7
Q ss_pred ccEE-EEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCccc-cCCCCC
Q 015527 284 RKQL-WLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKY-VLNGEL 360 (405)
Q Consensus 284 ~~~~-i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~~y-~~~~~~ 360 (405)
.+++ .++.+++. |..+.+.+++++.++..++.|+.+|.+... .+++.|++.. .|++++++. |+.. .+.| .
T Consensus 15 ~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~---~~~~~~~i~~--~Pt~~~~~~-g~~~~~~~g-~ 87 (97)
T cd02984 15 KLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP---EISEKFEITA--VPTFVFFRN-GTIVDRVSG-A 87 (97)
T ss_pred CEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH---HHHHhcCCcc--ccEEEEEEC-CEEEEEEeC-C
Confidence 4444 45666776 899999999999998778999999988654 7889999965 788888874 4433 3444 4
Q ss_pred CHHHHHHHH
Q 015527 361 TLSSIKSFG 369 (405)
Q Consensus 361 ~~~~l~~Fi 369 (405)
+.+.|.+.|
T Consensus 88 ~~~~l~~~~ 96 (97)
T cd02984 88 DPKELAKKV 96 (97)
T ss_pred CHHHHHHhh
Confidence 567776654
No 233
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.69 E-value=0.00024 Score=53.97 Aligned_cols=95 Identities=8% Similarity=0.083 Sum_probs=66.1
Q ss_pred ccccccccccccccCC---ccEE-EEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCc
Q 015527 268 VVTLTIHNAQFVFQDP---RKQL-WLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPR 342 (405)
Q Consensus 268 v~~l~~~~~~~~~~~~---~~~~-i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p 342 (405)
+.+++..++....... .+++ .++.+|+. |+.+.+.++++|.++.+ +.|+.+|++. . .+++.+++.. .|
T Consensus 6 v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~---~-~l~~~~~i~~--~P 78 (113)
T cd02957 6 VREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEK---A-FLVNYLDIKV--LP 78 (113)
T ss_pred EEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchh---h-HHHHhcCCCc--CC
Confidence 4455556665544333 4544 46667877 99999999999999975 8899999985 3 7888999965 78
Q ss_pred EEEEEeCCCccccCC-------CCCCHHHHHHHH
Q 015527 343 VIAYSARDAKKYVLN-------GELTLSSIKSFG 369 (405)
Q Consensus 343 ~i~i~~~~~~~y~~~-------~~~~~~~l~~Fi 369 (405)
.++++..+.....+. ..++.+.|.+|+
T Consensus 79 t~~~f~~G~~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 79 TLLVYKNGELIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEEEECCEEEEEEecHHHhCCCCCCHHHHHHHh
Confidence 888887532222222 257777777765
No 234
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.66 E-value=0.00038 Score=68.02 Aligned_cols=97 Identities=19% Similarity=0.168 Sum_probs=76.0
Q ss_pred EcChhhHHHHHcCCC-cEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCe
Q 015527 60 SLNGKNFSEFMGKNR-NVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (405)
Q Consensus 60 ~l~~~~~~~~~~~~~-~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 138 (405)
.|+++..+.+..=++ .-+-.|.+++|++|......+++++...+ +|.+-.||..+.++++.+|++.++|++++ +|+
T Consensus 102 ~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~ 178 (517)
T PRK15317 102 KLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVFL--NGE 178 (517)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEEE--CCc
Confidence 344444443333233 45778999999999999999999998755 79999999999999999999999999965 553
Q ss_pred eeeeecCCCCHHHHHHHHHhhhc
Q 015527 139 RQFQFFGERTRDVISAWVREKMT 161 (405)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~~~~ 161 (405)
..+.|..+.+++.+.+.+..+
T Consensus 179 --~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 179 --EFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred --EEEecCCCHHHHHHHHhcccc
Confidence 347798899988888876543
No 235
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.63 E-value=0.00047 Score=56.59 Aligned_cols=99 Identities=12% Similarity=0.133 Sum_probs=70.0
Q ss_pred CCccccCChhHHHHHhccC---CeEEEEEEcCCCCcc---HHHHHHHhccCCcceEEEecCH--HHHhhcCCCCCCCCCe
Q 015527 162 LGTYSITTTDEAERILTVE---SKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQTTSA--DVAEFFHIHPKSKRPA 233 (405)
Q Consensus 162 ~~~~~i~~~~~~~~~l~~~---~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~~~~--~l~~~~~~~~~~~~p~ 233 (405)
..+..+++.+++...+... ..++|.|+.+||.++ .+.+..+|.....++|+.+... .++..|++.. .|+
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~~l~~~f~v~~---vPT 138 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASATGASDEFDTDA---LPA 138 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccchhhHHhCCCCC---CCE
Confidence 3456777757776666543 388999999999985 4567778865678999887544 5889999985 999
Q ss_pred EEEeecCCCc--cc----cccCCCCHHHHHHHHhcc
Q 015527 234 LIFLHLEAGK--AT----PFRHQFTRLAIANFVTHT 263 (405)
Q Consensus 234 i~~~~~~~~~--~~----~y~g~~~~~~l~~fi~~~ 263 (405)
+++|+.+... .. ....+++.+.|..|+..+
T Consensus 139 lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 139 LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 9999976411 11 112357778888888653
No 236
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.63 E-value=0.0003 Score=49.98 Aligned_cols=97 Identities=15% Similarity=0.288 Sum_probs=72.0
Q ss_pred ccccccccCCccEEEEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcE-EEEEeC-C
Q 015527 274 HNAQFVFQDPRKQLWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRV-IAYSAR-D 350 (405)
Q Consensus 274 ~~~~~~~~~~~~~~i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~-i~i~~~-~ 350 (405)
..|..++....-++++|+.... -...+..+.++|...+|.=..+|+||.+.+ .+.+|+.+.++++..|. +.+.+. .
T Consensus 10 KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e-~kKLCKKlKv~~~~kp~~~~LkHYKd 88 (112)
T cd03067 10 KDFKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSE-SRKLCKKLKVDPSSKPKPVELKHYKD 88 (112)
T ss_pred HHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChH-HHHHHHHHccCCCCCCCcchhhcccC
Confidence 3566667666667777776533 567778999999999999999999999876 77999999998544332 334333 4
Q ss_pred Ccccc-CCCCCCHHHHHHHHHH
Q 015527 351 AKKYV-LNGELTLSSIKSFGEE 371 (405)
Q Consensus 351 ~~~y~-~~~~~~~~~l~~Fi~~ 371 (405)
|.+-. |+-.++..++..|+.|
T Consensus 89 G~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 89 GDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred CCccccccchhhHHHHHHHhhC
Confidence 44433 6778999999999876
No 237
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.62 E-value=0.00044 Score=48.61 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=42.6
Q ss_pred CCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCccc---HhHHHhCCCcccceEEEEeCCe
Q 015527 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE---KDLAKEYNILAYPTLYLFVAGV 138 (405)
Q Consensus 73 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~---~~~~~~~~i~~~Pt~~~~~~g~ 138 (405)
.+.-++.|+.+||++|++....|++ + ++.+-.+|++++ ..+.+..|..++|.+++ +|+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~----~--gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~ 66 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKE----K--GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGK 66 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHH----c--CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCE
Confidence 3455778999999999999888864 2 467777887765 34445568899999853 664
No 238
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.60 E-value=0.00081 Score=47.59 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=61.6
Q ss_pred EEEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCccccCCCCCCHHHH
Q 015527 287 LWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSSI 365 (405)
Q Consensus 287 ~i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~~y~~~~~~~~~~l 365 (405)
.+++.++|. |....+.+.+++.+++.++.+..+|.+... ...+.+|+.. .|.+++ + |. ..+.|..+.+++
T Consensus 4 ~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~--vPt~~~-~--g~-~~~~G~~~~~~l 74 (82)
T TIGR00411 4 ELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP---QKAMEYGIMA--VPAIVI-N--GD-VEFIGAPTKEEL 74 (82)
T ss_pred EEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH---HHHHHcCCcc--CCEEEE-C--CE-EEEecCCCHHHH
Confidence 456667877 999999999999999888999999988754 7788999875 688876 2 33 356777788999
Q ss_pred HHHHHHH
Q 015527 366 KSFGEEF 372 (405)
Q Consensus 366 ~~Fi~~~ 372 (405)
.++++..
T Consensus 75 ~~~l~~~ 81 (82)
T TIGR00411 75 VEAIKKR 81 (82)
T ss_pred HHHHHhh
Confidence 9998865
No 239
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.58 E-value=0.00079 Score=47.87 Aligned_cols=96 Identities=19% Similarity=0.317 Sum_probs=77.0
Q ss_pred ChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcc--cHhHHHhCCCc----ccce-EEEE
Q 015527 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL--EKDLAKEYNIL----AYPT-LYLF 134 (405)
Q Consensus 62 ~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~i~----~~Pt-~~~~ 134 (405)
+.++|..++.....++|+|..+-- .-......+.++|+...+.-+++-|||.+ .+.+|+++.|. .-|. +..|
T Consensus 8 d~KdfKKLLRTr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHY 86 (112)
T cd03067 8 DHKDFKKLLRTRNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHY 86 (112)
T ss_pred chHHHHHHHhhcCcEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcc
Confidence 347888999888889998876643 33345568899999999989999999987 68899999998 4553 4455
Q ss_pred eCCeeeeeecCCCCHHHHHHHHHh
Q 015527 135 VAGVRQFQFFGERTRDVISAWVRE 158 (405)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i~~ 158 (405)
.+|.....|+-..+...|..|++.
T Consensus 87 KdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 87 KDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred cCCCccccccchhhHHHHHHHhhC
Confidence 699888889999999999999863
No 240
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.56 E-value=0.00052 Score=55.20 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=28.7
Q ss_pred CCCcEEEEEecCCChhHhhhHHHHHHHHHHccC
Q 015527 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG 104 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~ 104 (405)
+.+++++.|+.++|++|+.+.|.+.++...+++
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~ 36 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD 36 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC
Confidence 357899999999999999999999998877653
No 241
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.53 E-value=0.00037 Score=55.54 Aligned_cols=80 Identities=13% Similarity=0.068 Sum_probs=60.2
Q ss_pred CccccccccccccccCC--ccE-EEEEecCCC-cHHHHHHHHHHHHHhcC-cEEEEEEEcCCcchhhhhhhhcCCCC---
Q 015527 267 LVVTLTIHNAQFVFQDP--RKQ-LWLFAPAYG-SDKVILTFEEVAKALKG-KLLHVYVEMNSEGVGRRVSQEFGVSG--- 338 (405)
Q Consensus 267 ~v~~l~~~~~~~~~~~~--~~~-~i~f~~~~~-~~~~~~~~~~va~~~~~-~~~f~~id~~~~~~~~~~~~~~gi~~--- 338 (405)
.+.+++.+++....... .++ +.+|.+|+. |+...+.+.++|+++.+ ++.|+.+|+++.+ .+++.|++..
T Consensus 29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~---~la~~~~V~~~~~ 105 (152)
T cd02962 29 HIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP---NVAEKFRVSTSPL 105 (152)
T ss_pred ccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH---HHHHHcCceecCC
Confidence 35566666776655332 244 446777887 99999999999999985 5999999999865 8899999965
Q ss_pred -CCCcEEEEEeC
Q 015527 339 -NAPRVIAYSAR 349 (405)
Q Consensus 339 -~~~p~i~i~~~ 349 (405)
...|.+++++.
T Consensus 106 v~~~PT~ilf~~ 117 (152)
T cd02962 106 SKQLPTIILFQG 117 (152)
T ss_pred cCCCCEEEEEEC
Confidence 23688888875
No 242
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.53 E-value=0.00027 Score=50.10 Aligned_cols=56 Identities=18% Similarity=0.335 Sum_probs=41.7
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccH-----hHHHhCCCcccceEEEEeCCe
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----DLAKEYNILAYPTLYLFVAGV 138 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~-----~~~~~~~i~~~Pt~~~~~~g~ 138 (405)
++.|+++||++|+...+.+.++.. ...+..++.+.+. .+.+..|..++|++ |.+|+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 577999999999999999888755 3557777766542 34456688999997 45663
No 243
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.51 E-value=0.0011 Score=55.24 Aligned_cols=97 Identities=12% Similarity=0.162 Sum_probs=67.6
Q ss_pred CCccccCChhHHHHHhccC--CeEEEEEEcCCCCc---cHHHHHHHhccCCcceEEEecCHHHHhhcCCCCCCCCCeEEE
Q 015527 162 LGTYSITTTDEAERILTVE--SKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIF 236 (405)
Q Consensus 162 ~~~~~i~~~~~~~~~l~~~--~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~~~~~~~~p~i~~ 236 (405)
..+..++..+........+ ..++|.||.+||.+ ..+.+..+|.....++|+.+........|++.. .|++++
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~~~~~~i~~---lPTlli 158 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQCIPNYPDKN---LPTILV 158 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHhHhhCCCCC---CCEEEE
Confidence 4456665443444455443 47888899999988 456688888656789999887777778999985 999999
Q ss_pred eecCCCccccc------cC-CCCHHHHHHHHhc
Q 015527 237 LHLEAGKATPF------RH-QFTRLAIANFVTH 262 (405)
Q Consensus 237 ~~~~~~~~~~y------~g-~~~~~~l~~fi~~ 262 (405)
|+++. ....+ .| .++.++|..++.+
T Consensus 159 yk~G~-~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 159 YRNGD-IVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EECCE-EEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 99864 11122 23 4677888877754
No 244
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.51 E-value=0.00099 Score=54.17 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=61.7
Q ss_pred CCCcEEEEEecCCChhHhhhHHHHHHHHHHc--cCCcEEEEEeCccc---------------------------------
Q 015527 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKML--KGEADLVMVDAYLE--------------------------------- 116 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~--~~~v~~~~v~~~~~--------------------------------- 116 (405)
..+++|+.|....|++|..+.+.+.++.+++ .+++.|...+.-..
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 4578999999999999999999999999998 55777776654100
Q ss_pred -----------------------------------HhHHHhCCCcccceEEEEeCCeeeeeecCCCCHHHHHHHHHh
Q 015527 117 -----------------------------------KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158 (405)
Q Consensus 117 -----------------------------------~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 158 (405)
...+++.||.++||+++ ||+. +.|..+.++|.+.|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence 01234568999999988 8854 5888999999998864
No 245
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.50 E-value=0.00044 Score=48.83 Aligned_cols=79 Identities=15% Similarity=0.181 Sum_probs=61.0
Q ss_pred EEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeC--CeeeeeecCCCCHHHHH
Q 015527 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA--GVRQFQFFGERTRDVIS 153 (405)
Q Consensus 76 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~--g~~~~~~~g~~~~~~l~ 153 (405)
.+++|..+.|.-|..+...+.++.... .+.+-.||+++++.+..+|+. .+|.+.+-.. ........+..+.+.+.
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~ 77 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLR 77 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHH
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHH
Confidence 367899999999999999888876554 489999999999999999996 6999766541 12245666788999999
Q ss_pred HHHH
Q 015527 154 AWVR 157 (405)
Q Consensus 154 ~~i~ 157 (405)
+||+
T Consensus 78 ~~L~ 81 (81)
T PF05768_consen 78 AWLE 81 (81)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9885
No 246
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0017 Score=51.45 Aligned_cols=100 Identities=13% Similarity=0.194 Sum_probs=71.1
Q ss_pred EcChhhHHHHHcCCCcEEEEEe-cCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCc---------------------cc
Q 015527 60 SLNGKNFSEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY---------------------LE 116 (405)
Q Consensus 60 ~l~~~~~~~~~~~~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~---------------------~~ 116 (405)
.-+++.+...-..+++++++|| ..+++-|-.++-.|+....+++. ++.++.|..+ .+
T Consensus 17 ~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~ 96 (157)
T COG1225 17 DQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDED 96 (157)
T ss_pred cCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCc
Confidence 3334333323346779999999 47899999999999999998887 7778877653 45
Q ss_pred HhHHHhCCCc------------ccceEEEEe-CCeeeeeecC---CCCHHHHHHHHHhh
Q 015527 117 KDLAKEYNIL------------AYPTLYLFV-AGVRQFQFFG---ERTRDVISAWVREK 159 (405)
Q Consensus 117 ~~~~~~~~i~------------~~Pt~~~~~-~g~~~~~~~g---~~~~~~l~~~i~~~ 159 (405)
..+++.||+. ..+++++++ +|++...+.. ...++++.+.+.+.
T Consensus 97 ~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 97 GEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred HHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 6788888873 357888888 7977766643 24456676666654
No 247
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.47 E-value=0.00033 Score=50.14 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=52.5
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccH----hHHHhCCC--cccceEEEEeCCeeeeeecCCCCHH
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYNI--LAYPTLYLFVAGVRQFQFFGERTRD 150 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~----~~~~~~~i--~~~Pt~~~~~~g~~~~~~~g~~~~~ 150 (405)
++.|..+||++|.+....++++..+.. .+.+..+|.+.+. ++.+..+- .++|+++ -+|+. .| ..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~----ig--G~~ 72 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKH----VG--GCT 72 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEE----ec--CHH
Confidence 577899999999999999988765543 4677777776533 45556663 7899984 35632 23 357
Q ss_pred HHHHHHHhhh
Q 015527 151 VISAWVREKM 160 (405)
Q Consensus 151 ~l~~~i~~~~ 160 (405)
+|.+++.+..
T Consensus 73 dl~~~~~~~~ 82 (86)
T TIGR02183 73 DFEQLVKENF 82 (86)
T ss_pred HHHHHHHhcc
Confidence 7777776644
No 248
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.38 E-value=0.0052 Score=46.46 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=62.2
Q ss_pred ChhhHHHHH--cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEe-CCe
Q 015527 62 NGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV-AGV 138 (405)
Q Consensus 62 ~~~~~~~~~--~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~-~g~ 138 (405)
++...++.+ ..++.+++-|-.+|-+.|.++...+.+++++.++-..++.||.++-+++.+-|.+. -|..++|- +++
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK 85 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence 455677766 45789999999999999999999999999999988899999999999999999999 67655543 664
No 249
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.37 E-value=0.00072 Score=51.34 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=60.9
Q ss_pred ccccccccccccccCCc-cEEE-EEecCCC-cHHHHHHHHHHHHHhcC---cEEEEEEEcCCcchhhhhhhhcCCCCCCC
Q 015527 268 VVTLTIHNAQFVFQDPR-KQLW-LFAPAYG-SDKVILTFEEVAKALKG---KLLHVYVEMNSEGVGRRVSQEFGVSGNAP 341 (405)
Q Consensus 268 v~~l~~~~~~~~~~~~~-~~~i-~f~~~~~-~~~~~~~~~~va~~~~~---~~~f~~id~~~~~~~~~~~~~~gi~~~~~ 341 (405)
+.+++..++........ ++++ ++++|+. |..+.+.|+++|.++++ .+.|+.+|++... +..+++.+++.. .
T Consensus 3 v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~i~~--~ 79 (114)
T cd02992 3 VIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFGVTG--Y 79 (114)
T ss_pred eEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCCCCC--C
Confidence 45677888887766554 5555 5667777 99999999999998763 5899999986543 457889999964 7
Q ss_pred cEEEEEeCC
Q 015527 342 RVIAYSARD 350 (405)
Q Consensus 342 p~i~i~~~~ 350 (405)
|.+.++..+
T Consensus 80 Pt~~lf~~~ 88 (114)
T cd02992 80 PTLRYFPPF 88 (114)
T ss_pred CEEEEECCC
Confidence 899888763
No 250
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.30 E-value=0.0022 Score=62.63 Aligned_cols=95 Identities=14% Similarity=0.132 Sum_probs=74.7
Q ss_pred EcChhhHHHHHc-CCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCe
Q 015527 60 SLNGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (405)
Q Consensus 60 ~l~~~~~~~~~~-~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 138 (405)
.|+++..+.+-. .++.-+-.|.++.|++|......+++++...+ +|..-.+|..+.++++.+|++.++|++++ +|+
T Consensus 103 ~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~ 179 (515)
T TIGR03140 103 KLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL--NGE 179 (515)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEEE--CCc
Confidence 344444443333 23445778999999999999999999988866 78999999999999999999999999976 553
Q ss_pred eeeeecCCCCHHHHHHHHHhh
Q 015527 139 RQFQFFGERTRDVISAWVREK 159 (405)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~~ 159 (405)
..+.|..+.+++.+.+.+.
T Consensus 180 --~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 180 --EFHNGRMDLAELLEKLEET 198 (515)
T ss_pred --EEEecCCCHHHHHHHHhhc
Confidence 3477888888887777655
No 251
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.29 E-value=0.0039 Score=43.93 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=51.3
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHH---HhCCCcccceEEEEeCCeeeeeecCCCCHHHHH
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA---KEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS 153 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~---~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 153 (405)
+..|..+||++|+..+..|.+ .++.|-.+|++++++.. +..|...+|++++ +|. ..+..+.+.|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~----~~~Gf~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL----SWSGFRPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE----EEecCCHHHHH
Confidence 567889999999998888754 26888899998877643 3457788999854 342 23456788888
Q ss_pred HHHHhh
Q 015527 154 AWVREK 159 (405)
Q Consensus 154 ~~i~~~ 159 (405)
+++...
T Consensus 71 ~~~~~~ 76 (81)
T PRK10329 71 RLHPAP 76 (81)
T ss_pred HHHHhh
Confidence 776544
No 252
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.29 E-value=0.00089 Score=46.08 Aligned_cols=66 Identities=11% Similarity=0.095 Sum_probs=47.2
Q ss_pred EEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhC---CCcccceEEEEeCCeeeeeecCCCCHHHHHH
Q 015527 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY---NILAYPTLYLFVAGVRQFQFFGERTRDVISA 154 (405)
Q Consensus 78 v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~---~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 154 (405)
..|..++|++|+.....+++ .++.+-.+|+++++.....+ |..++|++++ +|. .+.|..+.+.|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~---~~~~G~~~~~~~~ 70 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD---LSWSGFRPDKLKA 70 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC---cEEeccCHHHHHh
Confidence 46788999999999888864 26788888988887665544 8888999744 442 2445566666654
No 253
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.25 E-value=0.00092 Score=45.72 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=40.3
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhH----HHhCCCcccceEEEEeCCeee
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVAGVRQ 140 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~----~~~~~i~~~Pt~~~~~~g~~~ 140 (405)
++.|+++||++|+...+.+.+.. +.+..+|.+.+++. .+..+..++|++ +.+|+.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~i 61 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 56789999999999998887653 66778888776543 334566788877 4466433
No 254
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.21 E-value=0.0082 Score=44.50 Aligned_cols=94 Identities=9% Similarity=0.127 Sum_probs=70.3
Q ss_pred EEc-ChhhHHHHHc-CCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeC
Q 015527 59 VSL-NGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (405)
Q Consensus 59 ~~l-~~~~~~~~~~-~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 136 (405)
..+ +.++++.++. +++.++|-|+..--. .....|.++|+.+.+++.|+... +.++.+.+++. .|++.++++
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~ 75 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYEP 75 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeCC
Confidence 344 4566888888 788888888766433 45678999999997788897654 55677888775 699999974
Q ss_pred -Ceeeeee-cCCCCHHHHHHHHHhh
Q 015527 137 -GVRQFQF-FGERTRDVISAWVREK 159 (405)
Q Consensus 137 -g~~~~~~-~g~~~~~~l~~~i~~~ 159 (405)
......| .|..+.+.|.+||...
T Consensus 76 ~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 76 FMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCcccCCCCCCHHHHHHHHHHh
Confidence 4344568 7888999999999754
No 255
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.21 E-value=0.0064 Score=45.38 Aligned_cols=104 Identities=18% Similarity=0.202 Sum_probs=70.2
Q ss_pred cccccccccccccCCccEEEEEecCCCcHHHHHHHHHHHHH-h--cCcEEEEEEEcCCc--chhhhhhhhcCCCCCCCcE
Q 015527 269 VTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKA-L--KGKLLHVYVEMNSE--GVGRRVSQEFGVSGNAPRV 343 (405)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~va~~-~--~~~~~f~~id~~~~--~~~~~~~~~~gi~~~~~p~ 343 (405)
..|+.-+|.++.....-.++=|.-.-.+-+-++.|.++|++ . .+++.++.+-..++ .-|.++.+.||++.+..|+
T Consensus 7 v~LD~~tFdKvi~kf~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv 86 (126)
T PF07912_consen 7 VPLDELTFDKVIPKFKYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPV 86 (126)
T ss_dssp EEESTTHHHHHGGGSSEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SE
T ss_pred eeccceehhheeccCceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCE
Confidence 45677788888777765555566554455667789999944 3 35688998866554 2277999999999888899
Q ss_pred EEEEeC-CCcc--ccCCCCCCHHHHHHHHHHH
Q 015527 344 IAYSAR-DAKK--YVLNGELTLSSIKSFGEEF 372 (405)
Q Consensus 344 i~i~~~-~~~~--y~~~~~~~~~~l~~Fi~~~ 372 (405)
+.++.. .... |+..++++.++|.+|+.+-
T Consensus 87 ~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 87 IYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp EEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred EEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 998875 3333 3347899999999999863
No 256
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.20 E-value=0.0041 Score=42.75 Aligned_cols=66 Identities=12% Similarity=0.220 Sum_probs=45.5
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHh---HHHhCCCcccceEEEEeCCeeeeeecCCCCHHHHH
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD---LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS 153 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~---~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 153 (405)
++.|..+||++|.+....+++. ++.+-.+|++++.. +.+..|..++|.+ |-+|+.+ | ..+++.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i----g--g~~~l~ 68 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI----G--GSDDLE 68 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE----e--CHHHHH
Confidence 5678999999999998877742 46677777766543 3334588899997 4556432 3 356666
Q ss_pred HHH
Q 015527 154 AWV 156 (405)
Q Consensus 154 ~~i 156 (405)
+|+
T Consensus 69 ~~l 71 (72)
T cd03029 69 KYF 71 (72)
T ss_pred HHh
Confidence 664
No 257
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.19 E-value=0.0027 Score=52.50 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=32.9
Q ss_pred CCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEE
Q 015527 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLV 109 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~ 109 (405)
.+++.++.|+...|++|+.+.+.+.++.+++.+++.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 56899999999999999999999999999886655554
No 258
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.14 E-value=0.0019 Score=44.74 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=39.1
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHH----hCCCc-ccceEEEEeCCe
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK----EYNIL-AYPTLYLFVAGV 138 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~----~~~i~-~~Pt~~~~~~g~ 138 (405)
++.|..+||++|......|++. ++.+-.+|++.+++..+ ..+.. ++|++ |-+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCE
Confidence 5678899999999998887652 57778888887755443 34666 89977 44553
No 259
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.11 E-value=0.0013 Score=46.14 Aligned_cols=54 Identities=9% Similarity=0.274 Sum_probs=38.8
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHH----hCCCcccceEEEEeCCe
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK----EYNILAYPTLYLFVAGV 138 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~----~~~i~~~Pt~~~~~~g~ 138 (405)
++.|+.+||++|++....+++. ++.+-.+|++.++...+ ..|..++|++ +-+|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 3568899999999999888752 46667777777655443 3477889997 44563
No 260
>PHA03050 glutaredoxin; Provisional
Probab=97.11 E-value=0.002 Score=48.10 Aligned_cols=66 Identities=12% Similarity=0.139 Sum_probs=42.2
Q ss_pred HHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcc---c----HhHHHhCCCcccceEEEEeCCe
Q 015527 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL---E----KDLAKEYNILAYPTLYLFVAGV 138 (405)
Q Consensus 66 ~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~---~----~~~~~~~~i~~~Pt~~~~~~g~ 138 (405)
.++.+.+++ ++.|..+|||+|+.....|.+..-..+ .+-.+|+++ . ..+.+.-|..++|++ |-+|+
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~ 78 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKT 78 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCE
Confidence 344555544 667999999999999888876533221 344555554 2 234555688899998 44563
No 261
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0039 Score=46.31 Aligned_cols=81 Identities=14% Similarity=0.226 Sum_probs=60.5
Q ss_pred ccEEE-EEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCccccCCCCCC
Q 015527 284 RKQLW-LFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELT 361 (405)
Q Consensus 284 ~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~~y~~~~~~~ 361 (405)
+++++ +|+.|+. |....+.+.++|.+|.+ +.|..+|.++ ...+++.+++.. .|.+++++.+...-.+-| .+
T Consensus 22 kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde---~~~~~~~~~V~~--~PTf~f~k~g~~~~~~vG-a~ 94 (106)
T KOG0907|consen 22 KLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE---LEEVAKEFNVKA--MPTFVFYKGGEEVDEVVG-AN 94 (106)
T ss_pred CeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc---CHhHHHhcCceE--eeEEEEEECCEEEEEEec-CC
Confidence 35444 6778888 99999999999999999 9999999997 458899999975 789988875333333333 34
Q ss_pred HHHHHHHHHH
Q 015527 362 LSSIKSFGEE 371 (405)
Q Consensus 362 ~~~l~~Fi~~ 371 (405)
.+.+.+.+..
T Consensus 95 ~~~l~~~i~~ 104 (106)
T KOG0907|consen 95 KAELEKKIAK 104 (106)
T ss_pred HHHHHHHHHh
Confidence 4466655543
No 262
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.06 E-value=0.0016 Score=47.90 Aligned_cols=53 Identities=19% Similarity=0.247 Sum_probs=36.2
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHh-------HHHhCCCcccceEEEEeCC
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD-------LAKEYNILAYPTLYLFVAG 137 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~-------~~~~~~i~~~Pt~~~~~~g 137 (405)
++.|..+||++|++....|.+. ++.+..+|++++++ +.+..|..++|.+ |-+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g 69 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGG 69 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECC
Confidence 5668999999999998866653 35455666665533 2333467899997 4556
No 263
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.04 E-value=0.005 Score=47.60 Aligned_cols=93 Identities=16% Similarity=0.288 Sum_probs=66.8
Q ss_pred cCC-ccEEE-EEecCCC-cHHHHHHHH---HHHHHhcCcEEEEEEEcCCcc----------hhhhhhhhcCCCCCCCcEE
Q 015527 281 QDP-RKQLW-LFAPAYG-SDKVILTFE---EVAKALKGKLLHVYVEMNSEG----------VGRRVSQEFGVSGNAPRVI 344 (405)
Q Consensus 281 ~~~-~~~~i-~f~~~~~-~~~~~~~~~---~va~~~~~~~~f~~id~~~~~----------~~~~~~~~~gi~~~~~p~i 344 (405)
..+ +|+++ ++.+||. |+...+.+. .++..+.+++.++.+|.+... =...+...|++.. .|.+
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~--~Pt~ 88 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF--TPTV 88 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc--ccEE
Confidence 344 55544 5556777 888877664 566677777888889877530 0246788899864 7898
Q ss_pred EEEeCC-Ccc-ccCCCCCCHHHHHHHHHHHhcC
Q 015527 345 AYSARD-AKK-YVLNGELTLSSIKSFGEEFLED 375 (405)
Q Consensus 345 ~i~~~~-~~~-y~~~~~~~~~~l~~Fi~~~~~G 375 (405)
++++.+ |.. ..+.|..+.+.+.++++.++++
T Consensus 89 ~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 89 IFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred EEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 888875 443 4578888899999999998876
No 264
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.03 E-value=0.012 Score=43.86 Aligned_cols=90 Identities=23% Similarity=0.374 Sum_probs=67.5
Q ss_pred ChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeC-----
Q 015527 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA----- 136 (405)
Q Consensus 62 ~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~----- 136 (405)
+.++++.++..++.++|-|+..--. .....|.++|+.+.+++.|+... +..+...+++ .|++++|+.
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~~~ 78 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRLSN 78 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechhhhc
Confidence 3456777787788888888766433 46778999999997789997665 4577888988 688888832
Q ss_pred --CeeeeeecCCCCHHHHHHHHHhh
Q 015527 137 --GVRQFQFFGERTRDVISAWVREK 159 (405)
Q Consensus 137 --g~~~~~~~g~~~~~~l~~~i~~~ 159 (405)
......|.|..+.+.|.+||...
T Consensus 79 k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 79 KFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred ccCcccccccCcCCHHHHHHHHHhh
Confidence 12234689998999999999754
No 265
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.01 E-value=0.0032 Score=43.40 Aligned_cols=53 Identities=9% Similarity=0.099 Sum_probs=39.8
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHh----HHHhCCCcccceEEEEeCC
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLFVAG 137 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i~~~Pt~~~~~~g 137 (405)
++.|..+||++|++....+++ .++.+-.+|+++++. +.+..+-..+|++ |.+|
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~ 59 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE------KGLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNE 59 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECC
Confidence 567889999999999887775 257788888887765 4445577788997 4455
No 266
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=96.94 E-value=0.0032 Score=48.35 Aligned_cols=101 Identities=13% Similarity=0.140 Sum_probs=67.1
Q ss_pred ccccccccccccccCCcc-EEEEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcc---h-----hhhhhhhcCCC
Q 015527 268 VVTLTIHNAQFVFQDPRK-QLWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEG---V-----GRRVSQEFGVS 337 (405)
Q Consensus 268 v~~l~~~~~~~~~~~~~~-~~i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~---~-----~~~~~~~~gi~ 337 (405)
+..++...+.....++.. ++.++.+||. |+.+.+.|.+++++. +..+.++|.+... . ..++.+.+++.
T Consensus 8 ~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 8 LEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred ceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 345566666666666665 5667778887 999999999999984 3556666666321 0 12455667654
Q ss_pred C--CCCcEEEEEeCCCccccCCC-CCCHHHHHHHHH
Q 015527 338 G--NAPRVIAYSARDAKKYVLNG-ELTLSSIKSFGE 370 (405)
Q Consensus 338 ~--~~~p~i~i~~~~~~~y~~~~-~~~~~~l~~Fi~ 370 (405)
. ...|.+++++.+...-.+.| ..+.++|.+|+.
T Consensus 86 ~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 86 TSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred ccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 2 23789988875333344555 667999999875
No 267
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=96.87 E-value=0.0064 Score=51.65 Aligned_cols=39 Identities=10% Similarity=0.257 Sum_probs=31.6
Q ss_pred CCcEEEEEecCCChhHhhhHHHH---HHHHHHccCCcEEEEE
Q 015527 73 NRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMV 111 (405)
Q Consensus 73 ~~~~~v~f~a~~C~~C~~~~~~~---~~~~~~~~~~v~~~~v 111 (405)
+++.+|.|+.-.|+||..+.+.+ ..+.+.+.+++.+..+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~ 78 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKY 78 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEe
Confidence 46789999999999999999876 7788888766555543
No 268
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.86 E-value=0.19 Score=49.28 Aligned_cols=169 Identities=11% Similarity=0.038 Sum_probs=112.9
Q ss_pred CcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCee-eeeecCCCCHHHH
Q 015527 74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR-QFQFFGERTRDVI 152 (405)
Q Consensus 74 ~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~-~~~~~g~~~~~~l 152 (405)
+++-+.++.+.|..|.++...++++++.-. ++.+-..+.. ...|++.+.++|+. -.+|.|-..-.++
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g~Ef 86 (517)
T PRK15317 19 RPIELVASLDDSEKSAELKELLEEIASLSD-KITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMGHEF 86 (517)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCccHHH
Confidence 344444445579999999999999988654 5655332211 23799999886643 4889998888899
Q ss_pred HHHHHhhh--cCCccccCChhHHHHHhccC-CeEEEEEEcCCCCccHHHHHH---HhccCCcceEEEe---cCHHHHhhc
Q 015527 153 SAWVREKM--TLGTYSITTTDEAERILTVE-SKLVLGFLHDLEGMESEELAA---ASKLHSDVNFYQT---TSADVAEFF 223 (405)
Q Consensus 153 ~~~i~~~~--~~~~~~i~~~~~~~~~l~~~-~~~~v~f~~~~~~~~~~~~~~---~a~~~~~~~f~~~---~~~~l~~~~ 223 (405)
..||...+ +.+-..+ +++..+.+.+-+ +..+..|..+.|..+...... ++....++.+-.+ ..+++.++|
T Consensus 87 ~s~i~~i~~~~~~~~~l-~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~ 165 (517)
T PRK15317 87 TSLVLALLQVGGHPPKL-DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEAR 165 (517)
T ss_pred HHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhc
Confidence 88887775 2333344 555555554433 455777888999887765443 4444456665444 667889999
Q ss_pred CCCCCCCCCeEEEeecCCCccccccCCCCHHHHHHHHhcc
Q 015527 224 HIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (405)
Q Consensus 224 ~~~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (405)
++.. .|++++ + ....+.|..+.+++...+...
T Consensus 166 ~v~~---VP~~~i-~----~~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 166 NIMA---VPTVFL-N----GEEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred CCcc---cCEEEE-C----CcEEEecCCCHHHHHHHHhcc
Confidence 9984 899975 2 124577887888888877653
No 269
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.84 E-value=0.0064 Score=44.53 Aligned_cols=64 Identities=20% Similarity=0.313 Sum_probs=42.0
Q ss_pred hHHHHHcCCCcEEEEEe----cCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHH----HhCCCcccceEEEEeC
Q 015527 65 NFSEFMGKNRNVMVMFY----ANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA----KEYNILAYPTLYLFVA 136 (405)
Q Consensus 65 ~~~~~~~~~~~~~v~f~----a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~----~~~~i~~~Pt~~~~~~ 136 (405)
..++.++++ .++|.-. ++||++|+.....|.+. ++.+..+|++++++.. +..|...+|.++ -+
T Consensus 4 ~v~~~i~~~-~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf--i~ 74 (97)
T TIGR00365 4 RIKEQIKEN-PVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY--VK 74 (97)
T ss_pred HHHHHhccC-CEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE--EC
Confidence 344556554 4444333 38999999998877663 4667788887766543 345677889884 45
Q ss_pred C
Q 015527 137 G 137 (405)
Q Consensus 137 g 137 (405)
|
T Consensus 75 g 75 (97)
T TIGR00365 75 G 75 (97)
T ss_pred C
Confidence 5
No 270
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.84 E-value=0.0055 Score=46.52 Aligned_cols=85 Identities=9% Similarity=0.086 Sum_probs=59.4
Q ss_pred CccEEE-EEe-------cCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcch----hhhhhhhcCCCCCCCcEEEEEeC
Q 015527 283 PRKQLW-LFA-------PAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGV----GRRVSQEFGVSGNAPRVIAYSAR 349 (405)
Q Consensus 283 ~~~~~i-~f~-------~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~----~~~~~~~~gi~~~~~p~i~i~~~ 349 (405)
+.|+++ +++ +||. |....+.+++++.++.+++.|+.+|.++..+ +..+...+++. ...|.+++++.
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~-~~iPT~~~~~~ 99 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLT-TGVPTLLRWKT 99 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcc-cCCCEEEEEcC
Confidence 346555 555 5887 9999999999999999889999999875311 34778888987 45889988853
Q ss_pred CCccccCCCCCCHHHHHHHH
Q 015527 350 DAKKYVLNGELTLSSIKSFG 369 (405)
Q Consensus 350 ~~~~y~~~~~~~~~~l~~Fi 369 (405)
+.+..=++=++.+.+..|+
T Consensus 100 -~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 100 -PQRLVEDECLQADLVEMFF 118 (119)
T ss_pred -CceecchhhcCHHHHHHhh
Confidence 3333222235666666664
No 271
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=96.79 E-value=0.0095 Score=44.44 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=52.3
Q ss_pred HHHHHhc--cCCeEEEEEEcCCCCc---cHHHHHHHhccCCc-ceEEEe---cCHHHHhhcCCCCCCCCCeEEEeecCCC
Q 015527 172 EAERILT--VESKLVLGFLHDLEGM---ESEELAAASKLHSD-VNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAG 242 (405)
Q Consensus 172 ~~~~~l~--~~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~-~~f~~~---~~~~l~~~~~~~~~~~~p~i~~~~~~~~ 242 (405)
+++..+. +++.++|-|+++||++ ..+.+.++|...++ +.|+.+ ..+++++.|+++. .|+.++|+++.+
T Consensus 4 ~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~a---mPtfvffkngkh 80 (114)
T cd02986 4 EVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISY---IPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCcee---CcEEEEEECCcE
Confidence 4444443 4789999999999999 44567788844444 778765 5667899999984 799999987653
Q ss_pred ccccc
Q 015527 243 KATPF 247 (405)
Q Consensus 243 ~~~~y 247 (405)
-...|
T Consensus 81 ~~~d~ 85 (114)
T cd02986 81 MKVDY 85 (114)
T ss_pred EEEec
Confidence 33333
No 272
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=96.65 E-value=0.048 Score=46.11 Aligned_cols=106 Identities=21% Similarity=0.259 Sum_probs=72.3
Q ss_pred CCcEEcChhhHHHHHcCCCcEEEEEecCCCh-hHhhhHHHHHHHHHHcc-C---CcEEEEEeCccc--------------
Q 015527 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLK-G---EADLVMVDAYLE-------------- 116 (405)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~-~C~~~~~~~~~~~~~~~-~---~v~~~~v~~~~~-------------- 116 (405)
..+++-+++.+...-.++++++|.|-=+.|+ -|-.....+..+.+++. . ++.++-|.+|.+
T Consensus 50 f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~ 129 (207)
T COG1999 50 FELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELN 129 (207)
T ss_pred eeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhccc
Confidence 3455556666665555889999999888886 79888888888888877 3 444444444322
Q ss_pred ---------------HhHHHhCCCcc---------------cceEEEEe-CCeeeeeecCCCCHHHHHHHHHhhhc
Q 015527 117 ---------------KDLAKEYNILA---------------YPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (405)
Q Consensus 117 ---------------~~~~~~~~i~~---------------~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (405)
.++++.|+|.. ...+++++ +|+....|.+....+.+.+.+++.+.
T Consensus 130 ~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 130 FDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred CCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 23455555542 23456666 88888888877778888888877653
No 273
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0067 Score=42.57 Aligned_cols=51 Identities=12% Similarity=0.260 Sum_probs=36.6
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccH-----hHHHhC-CCcccceEEE
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----DLAKEY-NILAYPTLYL 133 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~-----~~~~~~-~i~~~Pt~~~ 133 (405)
++.|..++|++|++....+.+ .++.+..++.+.+. +..++. |.+++|++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 566888999999998877772 25677777766654 334444 7899999755
No 274
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=96.62 E-value=0.029 Score=47.49 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=52.6
Q ss_pred CCCCccCCCcEEcChhh---HHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEe
Q 015527 49 TWPLLYAKDVVSLNGKN---FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD 112 (405)
Q Consensus 49 ~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~ 112 (405)
.....++..++.++++. +-+..++++|.+++|-+-.||+=..-.+.|+++++++.+.+.|+.|-
T Consensus 75 ~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VY 141 (237)
T PF00837_consen 75 LGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVY 141 (237)
T ss_pred CCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhh
Confidence 34456778999999887 44566789999999999999999999999999999999855566554
No 275
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.013 Score=49.38 Aligned_cols=96 Identities=13% Similarity=0.164 Sum_probs=70.1
Q ss_pred CccccCChhHHHHHhccC--CeEEEEEEcCCCCc---cHHHHHHHhccCCcceEEEec---CHHHHhhcCCCCCCCCCeE
Q 015527 163 GTYSITTTDEAERILTVE--SKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQTT---SADVAEFFHIHPKSKRPAL 234 (405)
Q Consensus 163 ~~~~i~~~~~~~~~l~~~--~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~~---~~~l~~~~~~~~~~~~p~i 234 (405)
++..+++..+++.-+... +.++|.|++.||++ ..+.|..++..+....|..++ ....+..+|++. .|+.
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~a---mPTF 78 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNA---MPTF 78 (288)
T ss_pred CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCccc---CceE
Confidence 356677777777766654 48999999999999 566788988766777787664 334566788885 8999
Q ss_pred EEeecCCCccccccCCCCHHHHHHHHhcc
Q 015527 235 IFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (405)
Q Consensus 235 ~~~~~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (405)
++|+++. +...+.|- +...|..-+.++
T Consensus 79 iff~ng~-kid~~qGA-d~~gLe~kv~~~ 105 (288)
T KOG0908|consen 79 IFFRNGV-KIDQIQGA-DASGLEEKVAKY 105 (288)
T ss_pred EEEecCe-EeeeecCC-CHHHHHHHHHHH
Confidence 9999864 66677765 555566655544
No 276
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.59 E-value=0.0078 Score=43.80 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=43.1
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeC--ccc------------------------------HhHHHhCC
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA--YLE------------------------------KDLAKEYN 124 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~--~~~------------------------------~~~~~~~~ 124 (405)
+..|+.+.|++|..+.+.+.++.....+++.+..+.. ... ...++.+|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4679999999999999999999766666555554432 221 23456789
Q ss_pred CcccceEEEEe
Q 015527 125 ILAYPTLYLFV 135 (405)
Q Consensus 125 i~~~Pt~~~~~ 135 (405)
+.++|++++.+
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999998765
No 277
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.50 E-value=0.0048 Score=53.75 Aligned_cols=87 Identities=22% Similarity=0.427 Sum_probs=72.0
Q ss_pred CCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEe-CcccHhHHHhCCCcccceEEEEeCCeeeeeecCCCCHHH
Q 015527 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD-AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDV 151 (405)
Q Consensus 73 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~-~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (405)
..++-+.||++||+..+..+|.++-....+.. +....|+ ...-+.+..+|++.+.|++.+.... -..+|.|.++...
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t-~~~~~~~~r~l~s 153 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT-CPASYRGERDLAS 153 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcceeeccc-cchhhcccccHHH
Confidence 56899999999999999999999988888763 3333332 2334678899999999999888865 7789999999999
Q ss_pred HHHHHHhhhc
Q 015527 152 ISAWVREKMT 161 (405)
Q Consensus 152 l~~~i~~~~~ 161 (405)
|.+|..+.++
T Consensus 154 Lv~fy~~i~~ 163 (319)
T KOG2640|consen 154 LVNFYTEITP 163 (319)
T ss_pred HHHHHHhhcc
Confidence 9999998885
No 278
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.36 E-value=0.62 Score=45.71 Aligned_cols=169 Identities=14% Similarity=0.077 Sum_probs=111.2
Q ss_pred CCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCe-eeeeecCCCCHHH
Q 015527 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV-RQFQFFGERTRDV 151 (405)
Q Consensus 73 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~~g~~~~~~ 151 (405)
+.+.++.|.. .|..|.++...++++++.- +++.+..-+.+. ...|++.+..+|+ .-.+|.|-..-.+
T Consensus 19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~E 86 (515)
T TIGR03140 19 NPVTLVLSAG-SHEKSKELLELLDEIASLS-DKISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGGHE 86 (515)
T ss_pred CCEEEEEEeC-CCchhHHHHHHHHHHHHhC-CCeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCcHH
Confidence 3444555555 6999999999999888764 456664433221 2469999887764 4488999888888
Q ss_pred HHHHHHhhh--cCCccccCChhHHHHHhcc-CCeEEEEEEcCCCCccHHHHHH---HhccCCcceEEEe---cCHHHHhh
Q 015527 152 ISAWVREKM--TLGTYSITTTDEAERILTV-ESKLVLGFLHDLEGMESEELAA---ASKLHSDVNFYQT---TSADVAEF 222 (405)
Q Consensus 152 l~~~i~~~~--~~~~~~i~~~~~~~~~l~~-~~~~~v~f~~~~~~~~~~~~~~---~a~~~~~~~f~~~---~~~~l~~~ 222 (405)
+..||...+ +.+-..+ +++..+.+..- .+..+..|..+.|..+...... ++....++..-.+ ..+++.++
T Consensus 87 f~s~i~~i~~~~~~~~~l-~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~ 165 (515)
T TIGR03140 87 FTSLVLAILQVGGHGPKL-DEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEA 165 (515)
T ss_pred HHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHh
Confidence 888887765 2233445 55555555443 3455677888889887765443 3334455654443 56678899
Q ss_pred cCCCCCCCCCeEEEeecCCCccccccCCCCHHHHHHHHhc
Q 015527 223 FHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (405)
Q Consensus 223 ~~~~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~ 262 (405)
|++.. .|++++-. ...+.|..+.+++.+-+..
T Consensus 166 ~~v~~---VP~~~i~~-----~~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 166 LGIQG---VPAVFLNG-----EEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred cCCcc---cCEEEECC-----cEEEecCCCHHHHHHHHhh
Confidence 99984 89997521 2456677777777666543
No 279
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.28 E-value=0.039 Score=44.87 Aligned_cols=87 Identities=18% Similarity=0.252 Sum_probs=66.5
Q ss_pred CCCcEEcChhhHHHHH---cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceE
Q 015527 55 AKDVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131 (405)
Q Consensus 55 ~~~~~~l~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~ 131 (405)
-..|..+++.+|.+-+ .++-.|+|..|...-+-|.-+...++.++.+|. .++|+.+-.+.. ...|-=...||+
T Consensus 90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp-~iKFVki~at~c---IpNYPe~nlPTl 165 (240)
T KOG3170|consen 90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP-QIKFVKIPATTC---IPNYPESNLPTL 165 (240)
T ss_pred ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC-cceEEecccccc---cCCCcccCCCeE
Confidence 3578889999998665 334568888999999999999999999999999 688888754332 112333458999
Q ss_pred EEEeCCeeeeeecC
Q 015527 132 YLFVAGVRQFQFFG 145 (405)
Q Consensus 132 ~~~~~g~~~~~~~g 145 (405)
++|..|.+...+.|
T Consensus 166 ~VY~~G~lk~q~ig 179 (240)
T KOG3170|consen 166 LVYHHGALKKQMIG 179 (240)
T ss_pred EEeecchHHhheeh
Confidence 99999866665554
No 280
>PRK10638 glutaredoxin 3; Provisional
Probab=96.23 E-value=0.018 Score=40.75 Aligned_cols=54 Identities=7% Similarity=0.149 Sum_probs=38.7
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhH----HHhCCCcccceEEEEeCCe
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVAGV 138 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~----~~~~~i~~~Pt~~~~~~g~ 138 (405)
++.|..+||++|++....+++. ++.+..+|++.+++. .+..+...+|++ +.+|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~ 61 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQ 61 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 5567889999999998877753 466777888776543 344577889987 33563
No 281
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=96.19 E-value=0.039 Score=44.41 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=32.0
Q ss_pred CCcEEEE-EecCCChhHhhh-HHHHHHHHHHccC-Cc-EEEEEeCcc
Q 015527 73 NRNVMVM-FYANWCYWSKKL-APEFAAAAKMLKG-EA-DLVMVDAYL 115 (405)
Q Consensus 73 ~~~~~v~-f~a~~C~~C~~~-~~~~~~~~~~~~~-~v-~~~~v~~~~ 115 (405)
++++++. |.+.||+.|..+ .+.|.+.++++.. ++ .++.|.++.
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~ 75 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND 75 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC
Confidence 4445444 557999999999 9999999998875 55 477776543
No 282
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.08 E-value=0.02 Score=41.29 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=34.4
Q ss_pred CCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHH----HhCCCcccceEEEEeCCe
Q 015527 83 NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA----KEYNILAYPTLYLFVAGV 138 (405)
Q Consensus 83 ~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~----~~~~i~~~Pt~~~~~~g~ 138 (405)
+||++|++....|.+. ++.+..+|++.++++. +..|-..+|++ |.+|+
T Consensus 21 ~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~ 72 (90)
T cd03028 21 PRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGE 72 (90)
T ss_pred CCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence 7999999988777664 3667777877766543 34577889997 44663
No 283
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=95.94 E-value=0.017 Score=47.45 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=43.0
Q ss_pred CCcEEcChhhHHHHHcCCCcEEEEEecCCCh-hHhhhHHHHHHHHHHccC---CcEEEEEeCcc
Q 015527 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLKG---EADLVMVDAYL 115 (405)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~-~C~~~~~~~~~~~~~~~~---~v~~~~v~~~~ 115 (405)
..+.+-+++.++..--.+++++|.|.-+.|+ .|-.....+.++.+.+.. ++.++.|.+|.
T Consensus 35 f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 35 FTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp -EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred cEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 4556666666664445789999999999994 898888888888777654 57777776654
No 284
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.86 E-value=0.072 Score=36.94 Aligned_cols=71 Identities=13% Similarity=0.049 Sum_probs=51.6
Q ss_pred EEEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCccccCCC-CCCHHH
Q 015527 287 LWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNG-ELTLSS 364 (405)
Q Consensus 287 ~i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~~y~~~~-~~~~~~ 364 (405)
+-+|++||. |+...+.++++++++..++.|..+|.. ..+..+|+.. .|++++ + |+.. +.| ..+.+.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~------~~a~~~~v~~--vPti~i-~--G~~~-~~G~~~~~~~ 70 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDM------NEILEAGVTA--TPGVAV-D--GELV-IMGKIPSKEE 70 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCH------HHHHHcCCCc--CCEEEE-C--CEEE-EEeccCCHHH
Confidence 457888887 999999999999999988999888722 2246678864 788888 2 3322 455 345577
Q ss_pred HHHHH
Q 015527 365 IKSFG 369 (405)
Q Consensus 365 l~~Fi 369 (405)
+.+++
T Consensus 71 l~~~l 75 (76)
T TIGR00412 71 IKEIL 75 (76)
T ss_pred HHHHh
Confidence 77765
No 285
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=95.79 E-value=0.071 Score=52.66 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=67.4
Q ss_pred ccccCChhHHHHHhc----cCCeEEEEEEcCCCCccHHHHH------HHhccCCcceEEEec-------CHHHHhhcCCC
Q 015527 164 TYSITTTDEAERILT----VESKLVLGFLHDLEGMESEELA------AASKLHSDVNFYQTT-------SADVAEFFHIH 226 (405)
Q Consensus 164 ~~~i~~~~~~~~~l~----~~~~~~v~f~~~~~~~~~~~~~------~~a~~~~~~~f~~~~-------~~~l~~~~~~~ 226 (405)
...+++.+++++.++ ++++++|.|+++||.++...-. ++.+...++.+..++ +.++.++|++.
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~ 533 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVL 533 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCC
Confidence 345667777777664 3578999999999998765422 233333456565432 24788899998
Q ss_pred CCCCCCeEEEeecCCCc--cccccCCCCHHHHHHHHhcc
Q 015527 227 PKSKRPALIFLHLEAGK--ATPFRHQFTRLAIANFVTHT 263 (405)
Q Consensus 227 ~~~~~p~i~~~~~~~~~--~~~y~g~~~~~~l~~fi~~~ 263 (405)
+.|++++|+.++.. ...+.|..+.+++.+++++.
T Consensus 534 ---g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 534 ---GLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred ---CCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 49999999854433 35678888999999998763
No 286
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=95.76 E-value=0.072 Score=47.16 Aligned_cols=89 Identities=7% Similarity=-0.028 Sum_probs=63.3
Q ss_pred cEEEEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCc------chhhhhhhhcCCCCCCCcEEEEEeC-CCcccc-
Q 015527 285 KQLWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSE------GVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYV- 355 (405)
Q Consensus 285 ~~~i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~------~~~~~~~~~~gi~~~~~p~i~i~~~-~~~~y~- 355 (405)
-++.||..+|. |....+.++++++++.-.+..+-+|+... ..+..+.+.+|+.. .|.+++++. ++....
T Consensus 169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~--vPtl~Lv~~~~~~v~~v 246 (271)
T TIGR02740 169 GLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRT--VPAVFLADPDPNQFTPI 246 (271)
T ss_pred EEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCc--CCeEEEEECCCCEEEEE
Confidence 34456677787 99999999999999975565566655321 00235678899864 789988887 444443
Q ss_pred CCCCCCHHHHHHHHHHHhcC
Q 015527 356 LNGELTLSSIKSFGEEFLED 375 (405)
Q Consensus 356 ~~~~~~~~~l~~Fi~~~~~G 375 (405)
..|.++.++|.+.+..+..+
T Consensus 247 ~~G~~s~~eL~~~i~~~a~~ 266 (271)
T TIGR02740 247 GFGVMSADELVDRILLAAHP 266 (271)
T ss_pred EeCCCCHHHHHHHHHHHhcc
Confidence 34789999999999887653
No 287
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.22 Score=39.01 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=68.8
Q ss_pred CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCccc-----------HhHHH-h
Q 015527 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE-----------KDLAK-E 122 (405)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~~-----------~~~~~-~ 122 (405)
-.+..++++.+.-.--.++++||.=.|+-|+.--+ ...++.++++|++ .+.++..-|.+- ..+|+ .
T Consensus 8 ~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~ 86 (162)
T COG0386 8 FSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLN 86 (162)
T ss_pred ceeeccCCCCccHHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhc
Confidence 34556666666644468899999999999987653 4578888888887 788888888542 23343 3
Q ss_pred CCCcccc------------------------------------eEEEEe-CCeeeeeecCCCCHHHHHHHHHhhh
Q 015527 123 YNILAYP------------------------------------TLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (405)
Q Consensus 123 ~~i~~~P------------------------------------t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (405)
|||+ +| +=++++ +|+++.||.-..+.+++...|++.+
T Consensus 87 YgVt-Fp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL 160 (162)
T COG0386 87 YGVT-FPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLL 160 (162)
T ss_pred cCce-eeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHh
Confidence 4432 22 223443 7777777777777777777666654
No 288
>PRK10824 glutaredoxin-4; Provisional
Probab=95.63 E-value=0.043 Score=41.30 Aligned_cols=64 Identities=17% Similarity=0.356 Sum_probs=39.4
Q ss_pred hHHHHHcCCCcEEEEEec----CCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHH----hCCCcccceEEEEeC
Q 015527 65 NFSEFMGKNRNVMVMFYA----NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK----EYNILAYPTLYLFVA 136 (405)
Q Consensus 65 ~~~~~~~~~~~~~v~f~a----~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~----~~~i~~~Pt~~~~~~ 136 (405)
-.++.+++++ ++|.-.. |||++|++....|.... +.+..+|.++++++.. .-|...+|.+++ +
T Consensus 7 ~v~~~I~~~~-Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~ 77 (115)
T PRK10824 7 KIQRQIAENP-ILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--D 77 (115)
T ss_pred HHHHHHhcCC-EEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--C
Confidence 3455665544 4443333 69999999988777652 4445566666655443 336678888744 5
Q ss_pred C
Q 015527 137 G 137 (405)
Q Consensus 137 g 137 (405)
|
T Consensus 78 G 78 (115)
T PRK10824 78 G 78 (115)
T ss_pred C
Confidence 5
No 289
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.61 E-value=0.1 Score=49.69 Aligned_cols=201 Identities=10% Similarity=0.060 Sum_probs=104.7
Q ss_pred CccccCChhHHHHHhccC-CeEEEEEEcCCCCc---cHHHHHHHhc----cCCcceEEEe-----cCHHHHhhcCCCCCC
Q 015527 163 GTYSITTTDEAERILTVE-SKLVLGFLHDLEGM---ESEELAAASK----LHSDVNFYQT-----TSADVAEFFHIHPKS 229 (405)
Q Consensus 163 ~~~~i~~~~~~~~~l~~~-~~~~v~f~~~~~~~---~~~~~~~~a~----~~~~~~f~~~-----~~~~l~~~~~~~~~~ 229 (405)
++..+ +.+.++..+-.. ...+|-||.+||+. .++.|+.+|+ -..-+..+.+ .|..+|..|+|+.
T Consensus 40 ~ii~L-d~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~-- 116 (606)
T KOG1731|consen 40 PIIEL-DVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG-- 116 (606)
T ss_pred CeEEe-ehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC--
Confidence 34444 456666555443 47788899999987 5677888883 2344455544 6778999999994
Q ss_pred CCCeEEEeecCCCc---cccccCCCCHHHHHHHHh--------ccC---CCCccccccc-cccccccCCc----cEEEEE
Q 015527 230 KRPALIFLHLEAGK---ATPFRHQFTRLAIANFVT--------HTK---HPLVVTLTIH-NAQFVFQDPR----KQLWLF 290 (405)
Q Consensus 230 ~~p~i~~~~~~~~~---~~~y~g~~~~~~l~~fi~--------~~~---~p~v~~l~~~-~~~~~~~~~~----~~~i~f 290 (405)
+|+|.+|...... -..+.|.....++...+. .++ -|.+..+.+. .+..+++... -+.|+|
T Consensus 117 -~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~ 195 (606)
T KOG1731|consen 117 -YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVF 195 (606)
T ss_pred -CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEE
Confidence 9999999875322 123333333344444432 233 4545455543 3334444322 344455
Q ss_pred ecCCCcHHHHHHHHHHHHHhcC-cEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCccccCCCCCCHHHHHHHH
Q 015527 291 APAYGSDKVILTFEEVAKALKG-KLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFG 369 (405)
Q Consensus 291 ~~~~~~~~~~~~~~~va~~~~~-~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~~y~~~~~~~~~~l~~Fi 369 (405)
-..... -.+..+-..+.. .+....+-... ..-.+++.....|...+++.+...+......+.+...+-|
T Consensus 196 e~~~s~----lg~~~~l~~l~~~~v~vr~~~d~q------~~~~~~l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I 265 (606)
T KOG1731|consen 196 ETEPSD----LGWANLLNDLPSKQVGVRARLDTQ------NFPLFGLKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKI 265 (606)
T ss_pred ecCCcc----cHHHHHHhhccCCCcceEEEecch------hccccccCCCCchhhhhhcCCcccccccccccHHHHHHHH
Confidence 332110 112222223321 23333332221 1123445555678877777633333333334555666667
Q ss_pred HHHhcCce
Q 015527 370 EEFLEDKL 377 (405)
Q Consensus 370 ~~~~~Gkl 377 (405)
++++..+-
T Consensus 266 ~~~lg~~~ 273 (606)
T KOG1731|consen 266 DDLLGDKN 273 (606)
T ss_pred HHHhcCcc
Confidence 77665544
No 290
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=95.49 E-value=0.17 Score=41.52 Aligned_cols=87 Identities=20% Similarity=0.298 Sum_probs=61.8
Q ss_pred ccEEE-EEecCCC-cHHHHHHHHHHHHHhcCc-EEEEEEEcCCcc-------------------hhhhhhhhcCCCCCCC
Q 015527 284 RKQLW-LFAPAYG-SDKVILTFEEVAKALKGK-LLHVYVEMNSEG-------------------VGRRVSQEFGVSGNAP 341 (405)
Q Consensus 284 ~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~-~~f~~id~~~~~-------------------~~~~~~~~~gi~~~~~ 341 (405)
++.++ ++.++|. |......+.++++++.+. +.++.++.++.. -...+.+.||+.. .
T Consensus 62 k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--~ 139 (173)
T PRK03147 62 KGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGP--L 139 (173)
T ss_pred CEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC--c
Confidence 34444 4555665 888889999999999764 777777765321 0236678888854 6
Q ss_pred cEEEEEeCCCcc-ccCCCCCCHHHHHHHHHHH
Q 015527 342 RVIAYSARDAKK-YVLNGELTLSSIKSFGEEF 372 (405)
Q Consensus 342 p~i~i~~~~~~~-y~~~~~~~~~~l~~Fi~~~ 372 (405)
|.+++++.+|+. +.+.|..+.+++.++++++
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 888888775543 4568888999999999875
No 291
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=95.46 E-value=0.036 Score=41.70 Aligned_cols=85 Identities=21% Similarity=0.389 Sum_probs=55.2
Q ss_pred CccEEEEE-ecCCC-cHHHHHHHH---HHHHHhcCcEEEEEEEcCCcc-----------------hhhhhhhhcCCCCCC
Q 015527 283 PRKQLWLF-APAYG-SDKVILTFE---EVAKALKGKLLHVYVEMNSEG-----------------VGRRVSQEFGVSGNA 340 (405)
Q Consensus 283 ~~~~~i~f-~~~~~-~~~~~~~~~---~va~~~~~~~~f~~id~~~~~-----------------~~~~~~~~~gi~~~~ 340 (405)
+++.+++| .++|. |+.+...+. ++++.++.++.++.++..+.. .+.++.+.+|+..
T Consensus 5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g-- 82 (112)
T PF13098_consen 5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG-- 82 (112)
T ss_dssp SSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S--
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc--
Confidence 34555555 45665 887777766 466666667888888777542 1345888999875
Q ss_pred CcEEEEEeCCCc-cccCCCCCCHHHHHHHH
Q 015527 341 PRVIAYSARDAK-KYVLNGELTLSSIKSFG 369 (405)
Q Consensus 341 ~p~i~i~~~~~~-~y~~~~~~~~~~l~~Fi 369 (405)
.|.+++.+.+|+ .+.+.|-.+.+++.+++
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 799999987555 45688989999988764
No 292
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=95.45 E-value=0.32 Score=38.91 Aligned_cols=87 Identities=10% Similarity=0.164 Sum_probs=57.3
Q ss_pred cEEEEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCc-chh------hhhh-hhc---CCCCCCCcEEEEEeCCCc
Q 015527 285 KQLWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSE-GVG------RRVS-QEF---GVSGNAPRVIAYSARDAK 352 (405)
Q Consensus 285 ~~~i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~-~~~------~~~~-~~~---gi~~~~~p~i~i~~~~~~ 352 (405)
.++.|+.+||. |.+..+.+++++++++-.+..+-+|.... .|. .... ..+ ++ ...|..++++.+|.
T Consensus 53 ~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v--~~iPTt~LID~~G~ 130 (153)
T TIGR02738 53 ALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRP--VVTPATFLVNVNTR 130 (153)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCC--CCCCeEEEEeCCCC
Confidence 45667888888 99999999999999864454444443210 000 1222 334 34 24688888887543
Q ss_pred -cc-cCCCCCCHHHHHHHHHHHh
Q 015527 353 -KY-VLNGELTLSSIKSFGEEFL 373 (405)
Q Consensus 353 -~y-~~~~~~~~~~l~~Fi~~~~ 373 (405)
.+ ...|.++.+++.+.++.++
T Consensus 131 ~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 131 KAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred EEEEEeecccCHHHHHHHHHHhC
Confidence 34 4678899999998888754
No 293
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.37 E-value=0.095 Score=39.12 Aligned_cols=87 Identities=17% Similarity=0.128 Sum_probs=52.9
Q ss_pred cccccccCC-ccEEEEEecCCCcHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeC----
Q 015527 275 NAQFVFQDP-RKQLWLFAPAYGSDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR---- 349 (405)
Q Consensus 275 ~~~~~~~~~-~~~~i~f~~~~~~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~---- 349 (405)
.++.+.... ...++-|....+ ......|.++|..+++++.|++.... .+...+++.. |.++++.+
T Consensus 10 ele~f~~~~~~~~VVG~F~~~~-~~~~~~F~~vA~~~Rdd~~F~~t~~~------~~~~~~~~~~---~~vvl~rp~~~~ 79 (107)
T cd03068 10 QVQEFLRDGDDVIIIGVFSGEE-DPAYQLYQDAANSLREDYKFHHTFDS------EIFKSLKVSP---GQLVVFQPEKFQ 79 (107)
T ss_pred HHHHHHhcCCCEEEEEEECCCC-CHHHHHHHHHHHhcccCCEEEEEChH------HHHHhcCCCC---CceEEECcHHHh
Confidence 344444444 434443433322 24567899999999999999887544 5556777753 45566644
Q ss_pred ---CCccccCCCC-CCHHH-HHHHHHH
Q 015527 350 ---DAKKYVLNGE-LTLSS-IKSFGEE 371 (405)
Q Consensus 350 ---~~~~y~~~~~-~~~~~-l~~Fi~~ 371 (405)
......|.+. .+.++ |.+||++
T Consensus 80 ~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 80 SKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred hhcCcceeeeeccccchHHHHHHHHhc
Confidence 1222335555 66656 9999974
No 294
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.083 Score=38.91 Aligned_cols=64 Identities=16% Similarity=0.339 Sum_probs=39.9
Q ss_pred HHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccH-hHH----HhCCCcccceEEEEeCC
Q 015527 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-DLA----KEYNILAYPTLYLFVAG 137 (405)
Q Consensus 66 ~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~-~~~----~~~~i~~~Pt~~~~~~g 137 (405)
+...+.++ + +|.|..+||++|+.+...|.. ++....++.+|-.++. ++. +--+.+.+|.+++ +|
T Consensus 7 v~~~i~~~-~-VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~G 75 (104)
T KOG1752|consen 7 VRKMISEN-P-VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GG 75 (104)
T ss_pred HHHHhhcC-C-EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CC
Confidence 44455433 3 445889999999997776666 4445667777765543 332 2334567888754 55
No 295
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=95.25 E-value=0.064 Score=44.07 Aligned_cols=102 Identities=16% Similarity=0.235 Sum_probs=77.4
Q ss_pred CCcEEcC-hhhHHHHHcCC---CcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceE
Q 015527 56 KDVVSLN-GKNFSEFMGKN---RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131 (405)
Q Consensus 56 ~~~~~l~-~~~~~~~~~~~---~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~ 131 (405)
..|.+++ ++.|-..+.+. -.++|..|-+.-+-|..+...+.-+|.+|+ .++|.+|-.+. -....+|...+.|++
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-~vKFckikss~-~gas~~F~~n~lP~L 215 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-IVKFCKIKSSN-TGASDRFSLNVLPTL 215 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC-ceeEEEeeecc-ccchhhhcccCCceE
Confidence 4566764 67787777443 357888999999999999999999999998 69999986543 356788999999999
Q ss_pred EEEeCCeeeeeec-------CCCCHHHHHHHHHhh
Q 015527 132 YLFVAGVRQFQFF-------GERTRDVISAWVREK 159 (405)
Q Consensus 132 ~~~~~g~~~~~~~-------g~~~~~~l~~~i~~~ 159 (405)
.+|++|+.+..|. ....+..+.+|++..
T Consensus 216 liYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 216 LIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred EEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 9999996554332 235566666776655
No 296
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.14 Score=50.06 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=66.3
Q ss_pred cChhhHHHHHcCCCcEEEEEecCCChhHhhhHHH-H--HHHHHHccCCcEEEEEeCcccHhHHHhC--------CCcccc
Q 015527 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPE-F--AAAAKMLKGEADLVMVDAYLEKDLAKEY--------NILAYP 129 (405)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~-~--~~~~~~~~~~v~~~~v~~~~~~~~~~~~--------~i~~~P 129 (405)
=+.+.|...-..++|+++-.-.+||..|+-+..+ | .++|+.++.++.-++||-++-|++-+.| |-.+.|
T Consensus 31 W~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWP 110 (667)
T COG1331 31 WGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWP 110 (667)
T ss_pred cCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCc
Confidence 3568888888999999999999999999998775 3 6788888888999999999998876665 366899
Q ss_pred eEEEEe-CCee
Q 015527 130 TLYLFV-AGVR 139 (405)
Q Consensus 130 t~~~~~-~g~~ 139 (405)
-.++.. +|+.
T Consensus 111 LtVfLTPd~kP 121 (667)
T COG1331 111 LTVFLTPDGKP 121 (667)
T ss_pred eeEEECCCCce
Confidence 999997 7754
No 297
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=94.98 E-value=0.19 Score=33.64 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=43.0
Q ss_pred EEEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEE
Q 015527 287 LWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYS 347 (405)
Q Consensus 287 ~i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~ 347 (405)
.+++.+++. |+...+.+++++..+ .++.|..+|.++.+ ++.+.+|+.. .|.+++-
T Consensus 4 ~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~---~l~~~~~i~~--vPti~i~ 59 (67)
T cd02973 4 EVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFP---DLADEYGVMS--VPAIVIN 59 (67)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCH---hHHHHcCCcc--cCEEEEC
Confidence 456677777 999999999998764 46999999988754 7888999964 6888764
No 298
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=94.90 E-value=0.015 Score=47.84 Aligned_cols=153 Identities=13% Similarity=0.201 Sum_probs=64.7
Q ss_pred EEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhH---HHhCCC-----------cccceEEEEeCCeeeeeec
Q 015527 79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL---AKEYNI-----------LAYPTLYLFVAGVRQFQFF 144 (405)
Q Consensus 79 ~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~---~~~~~i-----------~~~Pt~~~~~~g~~~~~~~ 144 (405)
+|..|.|+.|-...|.+.++..++++.+.+--|-...-+.+ ....++ .++|...-+ ......
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~la~----kAA~~q 77 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPGGLMPDINDFMPRMPINGDFWRNEPRSSSYPACLAY----KAAQLQ 77 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE--SS-S--SB--H----TTHHHS--BS--HHHHHHH----HHHHTT
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEccchHHHHHHHHhcCCCHHHhcCCCCCCchHHHHHH----HHHHHh
Confidence 58899999999999999999999998655544432222111 111110 011111111 122344
Q ss_pred CCCCHHHHHHHHHhhhcCCccccCChhHHHHHhccCCeEEEEEEcCCCCccHHHHHHHhccCCcceEEEecCHHHHhhcC
Q 015527 145 GERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFH 224 (405)
Q Consensus 145 g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~l~~~~~~~v~f~~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~ 224 (405)
|......+..-+++.+--.-..+++.+-+.++.++-+. ....|.+-.. .+...=....+..++..++
T Consensus 78 g~k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gL------------D~~~F~~d~~-S~~~~~~~~~D~~la~~m~ 144 (176)
T PF13743_consen 78 GKKKARRFLRALQEALFLEGKNYSDEELLLEIAEELGL------------DVEMFKEDLH-SDEAKQAFQEDQQLAREMG 144 (176)
T ss_dssp T-H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--------------HHHHHHHHT-SHHHHHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCC------------CHHHHHHHHh-ChHHHHHHHHHHHHHHHcC
Confidence 65566666666766665445555554555555443221 1111111100 0000001123457888999
Q ss_pred CCCCCCCCeEEEeecC-CCccccccCCC
Q 015527 225 IHPKSKRPALIFLHLE-AGKATPFRHQF 251 (405)
Q Consensus 225 ~~~~~~~p~i~~~~~~-~~~~~~y~g~~ 251 (405)
++. .|+++++... ++..+...|..
T Consensus 145 I~~---~Ptlvi~~~~~~~~g~~i~g~~ 169 (176)
T PF13743_consen 145 ITG---FPTLVIFNENNEEYGILIEGYY 169 (176)
T ss_dssp -SS---SSEEEEE---------------
T ss_pred CCC---CCEEEEEecccccccccccccc
Confidence 995 9999999832 23344444443
No 299
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=94.56 E-value=0.099 Score=49.35 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=38.1
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHH---Hh---------CCCcccceEEE
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA---KE---------YNILAYPTLYL 133 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~---~~---------~~i~~~Pt~~~ 133 (405)
++.|..+||++|++....+.+. ++.+-.+|+++++... ++ .|.+++|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6678999999999988777652 5788888888776322 22 36788999855
No 300
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=94.50 E-value=0.53 Score=35.52 Aligned_cols=90 Identities=20% Similarity=0.217 Sum_probs=62.2
Q ss_pred CccEEEEEe-cCC-CcHHHHH-HHH--HHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeC-CCc-ccc
Q 015527 283 PRKQLWLFA-PAY-GSDKVIL-TFE--EVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAK-KYV 355 (405)
Q Consensus 283 ~~~~~i~f~-~~~-~~~~~~~-~~~--~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~-~~~-~y~ 355 (405)
++++++.+. +++ .|+.+.. .|. ++.+.++.++.+..+|.++.. +..+++.|++.. .|.+++++. ++. .+.
T Consensus 17 ~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e-~~~~~~~~~~~~--~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 17 KKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSE-GQRFLQSYKVDK--YPHIAIIDPRTGEVLKV 93 (114)
T ss_pred CceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCcc-HHHHHHHhCccC--CCeEEEEeCccCcEeEE
Confidence 335555444 344 2555543 343 666777777888888887655 678889999864 789998887 444 456
Q ss_pred CCCCCCHHHHHHHHHHHhcC
Q 015527 356 LNGELTLSSIKSFGEEFLED 375 (405)
Q Consensus 356 ~~~~~~~~~l~~Fi~~~~~G 375 (405)
+.|..+++.+.+-++.+..+
T Consensus 94 ~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 94 WSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred EcCCCCHHHHHHHHHHHHhc
Confidence 78999999988888877653
No 301
>smart00594 UAS UAS domain.
Probab=94.33 E-value=0.46 Score=36.38 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=53.4
Q ss_pred EEecCCC-cHHHHH-HHH--HHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCC-c-----cccCCC
Q 015527 289 LFAPAYG-SDKVIL-TFE--EVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDA-K-----KYVLNG 358 (405)
Q Consensus 289 ~f~~~~~-~~~~~~-~~~--~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~-~-----~y~~~~ 358 (405)
+..+++. |+.+.. .|. ++.+-.+.++.+..+|.++.+ +..++..+++.. .|.+++++.++ . .....|
T Consensus 34 ~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~e-g~~l~~~~~~~~--~P~~~~l~~~~g~~~~~~~~~~~G 110 (122)
T smart00594 34 LHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSE-GQRVSQFYKLDS--FPYVAIVDPRTGQRVIEWVGVVEG 110 (122)
T ss_pred EeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChh-HHHHHHhcCcCC--CCEEEEEecCCCceeEEEeccccC
Confidence 4444544 444333 233 555566667888888888777 778999999974 78999888743 2 234678
Q ss_pred CCCHHHHHHHH
Q 015527 359 ELTLSSIKSFG 369 (405)
Q Consensus 359 ~~~~~~l~~Fi 369 (405)
..+++++..++
T Consensus 111 ~~~~~~l~~~l 121 (122)
T smart00594 111 EISPEELMTFL 121 (122)
T ss_pred CCCHHHHHHhh
Confidence 89999988776
No 302
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=94.24 E-value=0.28 Score=43.15 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=58.0
Q ss_pred CccccCChhHHHHHhcc---CCeEEEEEEcCCCC---ccHHHHHHHhccCCcceEEEecCHH--HHhhcCCCCCCCCCeE
Q 015527 163 GTYSITTTDEAERILTV---ESKLVLGFLHDLEG---MESEELAAASKLHSDVNFYQTTSAD--VAEFFHIHPKSKRPAL 234 (405)
Q Consensus 163 ~~~~i~~~~~~~~~l~~---~~~~~v~f~~~~~~---~~~~~~~~~a~~~~~~~f~~~~~~~--l~~~~~~~~~~~~p~i 234 (405)
.+.+|.+.+.+...+.. ...+||-||.+... .....+..+|..+..++|..+.... +...|.... .|+|
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~~~~f~~~~---LPtl 202 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCPASENFPDKN---LPTL 202 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCCTTTTS-TTC----SEE
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccCcccCCcccC---CCEE
Confidence 35566665666665544 23455666655433 3566677888888999999764433 667888774 8999
Q ss_pred EEeecCC--Cccccc----cCCCCHHHHHHHHhccC
Q 015527 235 IFLHLEA--GKATPF----RHQFTRLAIANFVTHTK 264 (405)
Q Consensus 235 ~~~~~~~--~~~~~y----~g~~~~~~l~~fi~~~~ 264 (405)
++|+.++ +..+.+ ..+++..+|..|+..+-
T Consensus 203 lvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 203 LVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp EEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred EEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 9999764 111222 23477889999998653
No 303
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=94.18 E-value=0.48 Score=45.82 Aligned_cols=91 Identities=12% Similarity=0.068 Sum_probs=63.4
Q ss_pred ccCCccEEE-EEecCCC-cHHHHHHHHHHHHHhcC-cEEEEEEEcC-----C---------------------cchhhhh
Q 015527 280 FQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKG-KLLHVYVEMN-----S---------------------EGVGRRV 330 (405)
Q Consensus 280 ~~~~~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~-~~~f~~id~~-----~---------------------~~~~~~~ 330 (405)
++.++++++ |++.||. |....+.+.+++++++. ++.++.+..+ . .. ...+
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~-~~~l 131 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDN-GGTL 131 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccc-cHHH
Confidence 344555544 6778887 99999999999999973 4666555321 0 00 2356
Q ss_pred hhhcCCCCCCCcEEEEEeC-CCccccCCCCCCHHHHHHHHHHHh
Q 015527 331 SQEFGVSGNAPRVIAYSAR-DAKKYVLNGELTLSSIKSFGEEFL 373 (405)
Q Consensus 331 ~~~~gi~~~~~p~i~i~~~-~~~~y~~~~~~~~~~l~~Fi~~~~ 373 (405)
.+.|++.. .|..+++++ +...+.+.|.++.+.|.++|++..
T Consensus 132 ak~fgV~g--iPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~~ 173 (521)
T PRK14018 132 AQSLNISV--YPSWAIIGKDGDVQRIVKGSISEAQALALIRNPN 173 (521)
T ss_pred HHHcCCCC--cCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHhh
Confidence 67777753 788877776 444566888999999999999655
No 304
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=1.2 Score=39.37 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=80.1
Q ss_pred HHHHHHHhccCCCCccccccccccccccCCc---cEEEEEecC-----CC-cHHHHHHHHHHHHHhc------C--cEEE
Q 015527 254 LAIANFVTHTKHPLVVTLTIHNAQFVFQDPR---KQLWLFAPA-----YG-SDKVILTFEEVAKALK------G--KLLH 316 (405)
Q Consensus 254 ~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~---~~~i~f~~~-----~~-~~~~~~~~~~va~~~~------~--~~~f 316 (405)
+++.+-.+-.+..-+..++.+++..+...+. ..+++|... |. |.+..+.++-+|..++ + |+-|
T Consensus 28 ~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF 107 (331)
T KOG2603|consen 28 NKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFF 107 (331)
T ss_pred HHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEE
Confidence 4555555534445567788888887766544 334455532 22 6777788999998775 2 6889
Q ss_pred EEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeC-C-Ccc--ccCCC---CCCHHHHHHHHHHHhcCce
Q 015527 317 VYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-D-AKK--YVLNG---ELTLSSIKSFGEEFLEDKL 377 (405)
Q Consensus 317 ~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~-~-~~~--y~~~~---~~~~~~l~~Fi~~~~~Gkl 377 (405)
+.+|.++.+ ..-+.+++.+ .|.++++.+ . +.+ -.|++ ....|++.+|+++..+=++
T Consensus 108 ~~Vd~~e~p---~~Fq~l~ln~--~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 108 CMVDYDESP---QVFQQLNLNN--VPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV 170 (331)
T ss_pred EEEeccccH---HHHHHhcccC--CCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence 999999854 8889999975 789999876 2 222 12322 3558999999999765433
No 305
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=93.58 E-value=0.61 Score=35.81 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=59.7
Q ss_pred cccccccCCccEEE-EEecCCC-cHHHHH-HHH--HHHHHhcCcEEEEEEEcCCcchhhhhhh--------hcCCCCCCC
Q 015527 275 NAQFVFQDPRKQLW-LFAPAYG-SDKVIL-TFE--EVAKALKGKLLHVYVEMNSEGVGRRVSQ--------EFGVSGNAP 341 (405)
Q Consensus 275 ~~~~~~~~~~~~~i-~f~~~~~-~~~~~~-~~~--~va~~~~~~~~f~~id~~~~~~~~~~~~--------~~gi~~~~~ 341 (405)
.+...-..++|+++ ++++||. |+.+.. .|. +++.....++.++.+|.++.+ .+.+ .+|+. ..
T Consensus 7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~---~~~~~~~~~~~~~~~~~--G~ 81 (124)
T cd02955 7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERP---DVDKIYMNAAQAMTGQG--GW 81 (124)
T ss_pred HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCc---HHHHHHHHHHHHhcCCC--CC
Confidence 33444455666666 4556776 776654 343 677777778999999987643 3322 24554 48
Q ss_pred cEEEEEeCCCcc------ccCCCCCCHHHHHHHHHHHh
Q 015527 342 RVIAYSARDAKK------YVLNGELTLSSIKSFGEEFL 373 (405)
Q Consensus 342 p~i~i~~~~~~~------y~~~~~~~~~~l~~Fi~~~~ 373 (405)
|.+++++.+|+. ++...+.+...+.++++++.
T Consensus 82 Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (124)
T cd02955 82 PLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIR 119 (124)
T ss_pred CEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHH
Confidence 999999885443 22344577777888887764
No 306
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=93.46 E-value=1 Score=36.99 Aligned_cols=89 Identities=7% Similarity=0.025 Sum_probs=60.9
Q ss_pred EEEEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCC-cc----h---hhhhhhhcCCCCCCCcEEEEEeCCCcc-c-
Q 015527 286 QLWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNS-EG----V---GRRVSQEFGVSGNAPRVIAYSARDAKK-Y- 354 (405)
Q Consensus 286 ~~i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~-~~----~---~~~~~~~~gi~~~~~p~i~i~~~~~~~-y- 354 (405)
++.|+..||. |.+..+.++++++++.-.+.-+-+|... .. + ...+...||.-....|..++++.+++. +
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~ 152 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALP 152 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence 5667888887 9999999999999986443333344331 00 0 123456777422357888888886665 5
Q ss_pred cCCCCCCHHHHHHHHHHHhc
Q 015527 355 VLNGELTLSSIKSFGEEFLE 374 (405)
Q Consensus 355 ~~~~~~~~~~l~~Fi~~~~~ 374 (405)
..-|.++.+.+.+-++.+++
T Consensus 153 ~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 153 LLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEECCCCHHHHHHHHHHHHh
Confidence 47888999999988888764
No 307
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=93.26 E-value=0.5 Score=33.84 Aligned_cols=56 Identities=11% Similarity=-0.001 Sum_probs=43.7
Q ss_pred cEEEEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEE
Q 015527 285 KQLWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAY 346 (405)
Q Consensus 285 ~~~i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i 346 (405)
.+.+|..++|. |....+.+++++..+. ++.|..+|.+... ++...||+.. .|.+++
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~---e~a~~~~V~~--vPt~vi 71 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQ---DEVEERGIMS--VPAIFL 71 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCH---HHHHHcCCcc--CCEEEE
Confidence 33445556665 9999999999998775 5999999988754 7889999975 688875
No 308
>PF13728 TraF: F plasmid transfer operon protein
Probab=93.09 E-value=0.69 Score=39.40 Aligned_cols=79 Identities=10% Similarity=0.201 Sum_probs=56.0
Q ss_pred EEEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCc------chhhhhhhhcCCCCCCCcEEEEEeCCC-ccccC-C
Q 015527 287 LWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSE------GVGRRVSQEFGVSGNAPRVIAYSARDA-KKYVL-N 357 (405)
Q Consensus 287 ~i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~------~~~~~~~~~~gi~~~~~p~i~i~~~~~-~~y~~-~ 357 (405)
++||.+.|. |+.+...++.++.+|.=.+..+-+|+... .....+.+.+|+. ..|++++.+.++ ..++. -
T Consensus 125 ~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~--~~Pal~Lv~~~~~~~~pv~~ 202 (215)
T PF13728_consen 125 FFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVK--VTPALFLVNPNTKKWYPVSQ 202 (215)
T ss_pred EEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCC--cCCEEEEEECCCCeEEEEee
Confidence 444555555 99999999999999977777777776421 0134677889996 478999988844 55554 4
Q ss_pred CCCCHHHHHH
Q 015527 358 GELTLSSIKS 367 (405)
Q Consensus 358 ~~~~~~~l~~ 367 (405)
|.++.++|.+
T Consensus 203 G~~s~~~L~~ 212 (215)
T PF13728_consen 203 GFMSLDELED 212 (215)
T ss_pred ecCCHHHHHH
Confidence 6788777653
No 309
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=93.07 E-value=0.4 Score=36.45 Aligned_cols=70 Identities=13% Similarity=0.160 Sum_probs=45.6
Q ss_pred cCCccEEE-EEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCc
Q 015527 281 QDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAK 352 (405)
Q Consensus 281 ~~~~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~ 352 (405)
..++|+++ ++++||. |+.+.+.+.+.+........|+.+|.+... ......|++.....|.+++++.+|+
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~--~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE--EPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC--CchhhhcccCCCccceEEEECCCCC
Confidence 34446555 5667887 999988888877755444456666666432 1334577776545899999986443
No 310
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=93.06 E-value=0.72 Score=39.49 Aligned_cols=108 Identities=16% Similarity=0.156 Sum_probs=69.5
Q ss_pred cCCCcEEcChhhHHHHHcCCCcEEEEEecCCCh-hHhhhHHHHHHHHHHccC--Cc----EEEEEeCcc-----------
Q 015527 54 YAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLKG--EA----DLVMVDAYL----------- 115 (405)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~-~C~~~~~~~~~~~~~~~~--~v----~~~~v~~~~----------- 115 (405)
....+++.+++.+.+.-..++.++++|-=+.|| -|-.+...+.++.+++.. .+ .|+.||-..
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~ 199 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVS 199 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHH
Confidence 344566666666665555789999999999997 788888887777776655 22 355555321
Q ss_pred ---------------cHhHHHhCCCcccc-------------e--EEEEe-CCeeeeeecCCCCHHHHHHHHHhhhc
Q 015527 116 ---------------EKDLAKEYNILAYP-------------T--LYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (405)
Q Consensus 116 ---------------~~~~~~~~~i~~~P-------------t--~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (405)
-.++|++|.|.--+ + +++++ +|+.+.-|--.++++++.+-|.+++.
T Consensus 200 eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 200 EFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred hcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 13567777764322 2 34445 77444444446889999888877653
No 311
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=92.85 E-value=0.44 Score=36.37 Aligned_cols=75 Identities=7% Similarity=0.044 Sum_probs=48.0
Q ss_pred CCeEEEEEEcCCCCccHHHHHHHhccCCcc--------------------------eEEEecCHHHHhhcCCCCCCCCCe
Q 015527 180 ESKLVLGFLHDLEGMESEELAAASKLHSDV--------------------------NFYQTTSADVAEFFHIHPKSKRPA 233 (405)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~~~~~a~~~~~~--------------------------~f~~~~~~~l~~~~~~~~~~~~p~ 233 (405)
.+++++.|+.+||..+......+..+...+ .+....+..+++.|++.. .|+
T Consensus 20 ~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~---~P~ 96 (123)
T cd03011 20 GKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSV---TPA 96 (123)
T ss_pred CCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCc---ccE
Confidence 467888888999987554433333211112 222234456888899884 899
Q ss_pred EEEeecCCCccccccCCCCHHHHHH
Q 015527 234 LIFLHLEAGKATPFRHQFTRLAIAN 258 (405)
Q Consensus 234 i~~~~~~~~~~~~y~g~~~~~~l~~ 258 (405)
++++.+++ ....+.|-.+.+.|.+
T Consensus 97 ~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 97 IVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred EEEEcCCC-eEEEEeccCCHHHHHh
Confidence 99998765 5566777777777643
No 312
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=92.75 E-value=0.93 Score=33.57 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=44.9
Q ss_pred ccEE-EEEecCCC-cHHHHHHHHHHHHHhc-CcEEEEEEEcCCc--ch------------------hhhhhhhcCCCCCC
Q 015527 284 RKQL-WLFAPAYG-SDKVILTFEEVAKALK-GKLLHVYVEMNSE--GV------------------GRRVSQEFGVSGNA 340 (405)
Q Consensus 284 ~~~~-i~f~~~~~-~~~~~~~~~~va~~~~-~~~~f~~id~~~~--~~------------------~~~~~~~~gi~~~~ 340 (405)
++.+ .++..+|. |......+.++.+++. .++.++.++.+.. .- ...+.+.||+..
T Consensus 20 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 97 (116)
T cd02966 20 KVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG-- 97 (116)
T ss_pred CEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc--
Confidence 3444 45556766 8888999999999986 4588888887762 00 135667777753
Q ss_pred CcEEEEEeCCC
Q 015527 341 PRVIAYSARDA 351 (405)
Q Consensus 341 ~p~i~i~~~~~ 351 (405)
.|.+++++.+|
T Consensus 98 ~P~~~l~d~~g 108 (116)
T cd02966 98 LPTTFLIDRDG 108 (116)
T ss_pred cceEEEECCCC
Confidence 67777777644
No 313
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=92.44 E-value=1.3 Score=38.58 Aligned_cols=87 Identities=15% Similarity=0.105 Sum_probs=62.4
Q ss_pred EEEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcc------hhhhhhhhcCCCCCCCcEEEEEeC-CCccccC-C
Q 015527 287 LWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEG------VGRRVSQEFGVSGNAPRVIAYSAR-DAKKYVL-N 357 (405)
Q Consensus 287 ~i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~------~~~~~~~~~gi~~~~~p~i~i~~~-~~~~y~~-~ 357 (405)
+++|...|. |+++...++.+|.+|.=.+..+-+|+...+ .....++.+|+.. .|++++.+. .+..++. -
T Consensus 155 ~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~--~Pal~Lv~~~t~~~~pv~~ 232 (256)
T TIGR02739 155 FFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKY--FPALYLVNPKSQKMSPLAY 232 (256)
T ss_pred EEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCcc--CceEEEEECCCCcEEEEee
Confidence 344444455 999999999999999988888888887431 1234667888854 789998888 4555654 4
Q ss_pred CCCCHHHHHHHHHHHhcC
Q 015527 358 GELTLSSIKSFGEEFLED 375 (405)
Q Consensus 358 ~~~~~~~l~~Fi~~~~~G 375 (405)
|.++.++|.+=|..+.++
T Consensus 233 G~iS~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 233 GFISQDELKERILNVLTQ 250 (256)
T ss_pred ccCCHHHHHHHHHHHHhc
Confidence 689988886666655544
No 314
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=92.10 E-value=0.46 Score=45.84 Aligned_cols=96 Identities=16% Similarity=0.202 Sum_probs=66.8
Q ss_pred cccCChhHHHHHhccCC--eEEEEEEcCCCCccHHH----HHHHh--ccCCcceEEE---ec----CHHHHhhcCCCCCC
Q 015527 165 YSITTTDEAERILTVES--KLVLGFLHDLEGMESEE----LAAAS--KLHSDVNFYQ---TT----SADVAEFFHIHPKS 229 (405)
Q Consensus 165 ~~i~~~~~~~~~l~~~~--~~~v~f~~~~~~~~~~~----~~~~a--~~~~~~~f~~---~~----~~~l~~~~~~~~~~ 229 (405)
..+++..+++..+.+++ ++++.||++||-.+... |.+.. ....++..-. +. +.++.+++++-
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~--- 533 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVF--- 533 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCC---
Confidence 45666668999988876 99999999999764332 22211 2223333332 32 23466788876
Q ss_pred CCCeEEEeecCCCccccccCCCCHHHHHHHHhcc
Q 015527 230 KRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (405)
Q Consensus 230 ~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (405)
+.|++++|..++..+...+|.++.+.+.+++++.
T Consensus 534 G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 534 GVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 5899999997776777799999999999999764
No 315
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=91.47 E-value=1.3 Score=30.13 Aligned_cols=62 Identities=24% Similarity=0.301 Sum_probs=48.7
Q ss_pred EEEEEecCCChhHhhhHHHHHHHHHHc-cCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCC
Q 015527 76 VMVMFYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG 137 (405)
Q Consensus 76 ~~v~f~a~~C~~C~~~~~~~~~~~~~~-~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g 137 (405)
.+.+|-+..-+.++.....+.++-+.+ ++.+.+=.||..+++.+++.++|-.+||++-...+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P~ 65 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLPP 65 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhcCCC
Confidence 345555666688888888888887766 44789999999999999999999999997654443
No 316
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=90.82 E-value=2.7 Score=34.95 Aligned_cols=29 Identities=14% Similarity=0.367 Sum_probs=25.2
Q ss_pred EEEEEecCCChhHhhhHHHHHHHHHHccC
Q 015527 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKG 104 (405)
Q Consensus 76 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~ 104 (405)
++..|+..-|++|-...+.+.++.+.+.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~ 29 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPD 29 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence 46778899999999999999999999843
No 317
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=90.74 E-value=2.6 Score=30.23 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=29.2
Q ss_pred EEEEEecCCC-cHHHHHHHHHHHHHhc--CcEEEEEEEcCCc
Q 015527 286 QLWLFAPAYG-SDKVILTFEEVAKALK--GKLLHVYVEMNSE 324 (405)
Q Consensus 286 ~~i~f~~~~~-~~~~~~~~~~va~~~~--~~~~f~~id~~~~ 324 (405)
++.+++.++. |....+.+.++.++++ +++.|+.+..++.
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~ 46 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED 46 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence 3445556766 8899999999999999 7788888877654
No 318
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=90.73 E-value=2.5 Score=36.65 Aligned_cols=87 Identities=10% Similarity=0.072 Sum_probs=62.3
Q ss_pred EEEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcc------hhhhhhhhcCCCCCCCcEEEEEeCC-CccccC-C
Q 015527 287 LWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEG------VGRRVSQEFGVSGNAPRVIAYSARD-AKKYVL-N 357 (405)
Q Consensus 287 ~i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~------~~~~~~~~~gi~~~~~p~i~i~~~~-~~~y~~-~ 357 (405)
++||-..|. |.++...++.++.+|.=.+.-+-+|+...+ ........+|+.. .|++++.+.+ +..++. -
T Consensus 148 ~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~--~PAl~Lv~~~t~~~~pv~~ 225 (248)
T PRK13703 148 MFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKY--FPALMLVDPKSGSVRPLSY 225 (248)
T ss_pred EEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcc--cceEEEEECCCCcEEEEee
Confidence 344444455 999999999999999988888888885431 0223456778753 6899999884 455554 4
Q ss_pred CCCCHHHHHHHHHHHhcC
Q 015527 358 GELTLSSIKSFGEEFLED 375 (405)
Q Consensus 358 ~~~~~~~l~~Fi~~~~~G 375 (405)
|.++.++|.+=|..+.+|
T Consensus 226 G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 226 GFITQDDLAKRFLNVSTD 243 (248)
T ss_pred ccCCHHHHHHHHHHHHhc
Confidence 689999987777776665
No 319
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=90.60 E-value=1.3 Score=31.18 Aligned_cols=74 Identities=22% Similarity=0.223 Sum_probs=58.5
Q ss_pred cEEEEEecCCChhHhhhHHHHHHHHHHc-cCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeeeeeecCCCCH
Q 015527 75 NVMVMFYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR 149 (405)
Q Consensus 75 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~-~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (405)
.++=.|.|..-+.++.....+.++-+.+ .+.+.+=.||..++|.+++.++|-.+||++=...+ ...+..|..+.
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~-P~rriiGdls~ 78 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP-PVRKIIGDLSD 78 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC-Ccceeeccccc
Confidence 4555677777788888888888886654 55788888999999999999999999997665555 67778887653
No 320
>PRK09301 circadian clock protein KaiB; Provisional
Probab=90.41 E-value=1.3 Score=32.36 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=60.3
Q ss_pred CcEEEEEecCCChhHhhhHHHHHHHHHHc-cCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeeeeeecCCCCH
Q 015527 74 RNVMVMFYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR 149 (405)
Q Consensus 74 ~~~~v~f~a~~C~~C~~~~~~~~~~~~~~-~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (405)
..++=.|.|..-+..++....+.++-+.+ .+.+.+=.||..++|.+++.++|-.+||++=...+ ...+..|..+.
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~-P~rriiGDlsd 81 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPP-PVRKIIGDLSD 81 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC-Ccceeeccccc
Confidence 46677778888888888888888886654 55788888999999999999999999997655555 67788887653
No 321
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=89.82 E-value=2.2 Score=34.93 Aligned_cols=87 Identities=17% Similarity=0.113 Sum_probs=53.5
Q ss_pred CccEEE-EEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcc-----h---------------hhhhhhhcCCCCCC
Q 015527 283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEG-----V---------------GRRVSQEFGVSGNA 340 (405)
Q Consensus 283 ~~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~-----~---------------~~~~~~~~gi~~~~ 340 (405)
+++.++ ++.+||. |....+.+++++++ ++.++.++.++.. | ...+.+.|++..
T Consensus 63 gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~-- 137 (173)
T TIGR00385 63 GKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG-- 137 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee--
Confidence 444444 4556665 88888888877654 3455555432210 0 113344555533
Q ss_pred CcEEEEEeCCC-ccccCCCCCCHHHHHHHHHHHhc
Q 015527 341 PRVIAYSARDA-KKYVLNGELTLSSIKSFGEEFLE 374 (405)
Q Consensus 341 ~p~i~i~~~~~-~~y~~~~~~~~~~l~~Fi~~~~~ 374 (405)
.|..++++.+| ..|.+.|.++.+++.++++.++.
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 57777776644 46777888999999999998873
No 322
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=89.71 E-value=4.2 Score=27.94 Aligned_cols=69 Identities=17% Similarity=0.330 Sum_probs=47.8
Q ss_pred EecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCccccCCC-CCCHHHHHH
Q 015527 290 FAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNG-ELTLSSIKS 367 (405)
Q Consensus 290 f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~~y~~~~-~~~~~~l~~ 367 (405)
+.+.|. |......+++++..+. +.+-.+|..+. +++ ..||+.. .|++++. |+ ..+.| ..+.+.|.+
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~---~~~-~~ygv~~--vPalvIn---g~-~~~~G~~p~~~el~~ 73 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDF---EEI-EKYGVMS--VPALVIN---GK-VVFVGRVPSKEELKE 73 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTH---HHH-HHTT-SS--SSEEEET---TE-EEEESS--HHHHHHH
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCH---HHH-HHcCCCC--CCEEEEC---CE-EEEEecCCCHHHHHH
Confidence 666665 8889999999999984 77777777543 365 8999975 7999763 33 33455 778888888
Q ss_pred HHH
Q 015527 368 FGE 370 (405)
Q Consensus 368 Fi~ 370 (405)
||+
T Consensus 74 ~l~ 76 (76)
T PF13192_consen 74 LLE 76 (76)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 323
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=89.59 E-value=3.3 Score=34.53 Aligned_cols=92 Identities=18% Similarity=0.135 Sum_probs=53.8
Q ss_pred CccEEE-EEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcc----------------hhhhhhhhcCCCCCCCcEE
Q 015527 283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEG----------------VGRRVSQEFGVSGNAPRVI 344 (405)
Q Consensus 283 ~~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~----------------~~~~~~~~~gi~~~~~p~i 344 (405)
+++.++ ++.+||. |.+..+.+.++.++...++.++. +.+... ....+.+.||+.. .|..
T Consensus 74 gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~--~P~~ 150 (189)
T TIGR02661 74 GRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS-DGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGK--IPYG 150 (189)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe-CCCHHHHHHHHHhcCCCcceeechhHHHHhccCCc--cceE
Confidence 344444 5556676 88888888888876554454443 111111 1223445555543 6777
Q ss_pred EEEeCCCccccCCCCCCHHHHHHHHHHHhcCce
Q 015527 345 AYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL 377 (405)
Q Consensus 345 ~i~~~~~~~y~~~~~~~~~~l~~Fi~~~~~Gkl 377 (405)
++.+.+|+.-.....-+.+.+++.++....|..
T Consensus 151 ~lID~~G~I~~~g~~~~~~~le~ll~~l~~~~~ 183 (189)
T TIGR02661 151 VLLDQDGKIRAKGLTNTREHLESLLEADREGFA 183 (189)
T ss_pred EEECCCCeEEEccCCCCHHHHHHHHHHHHcCcc
Confidence 787775543322223466889999998888843
No 324
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=89.49 E-value=6.1 Score=30.01 Aligned_cols=88 Identities=8% Similarity=0.101 Sum_probs=54.6
Q ss_pred cEEEEEecCCCcH---HHHHHHHHHHHHhcC-cEEEEEEEcCCcc---------hhhhhhhhcCCCCCCCcEEEEEeCCC
Q 015527 285 KQLWLFAPAYGSD---KVILTFEEVAKALKG-KLLHVYVEMNSEG---------VGRRVSQEFGVSGNAPRVIAYSARDA 351 (405)
Q Consensus 285 ~~~i~f~~~~~~~---~~~~~~~~va~~~~~-~~~f~~id~~~~~---------~~~~~~~~~gi~~~~~p~i~i~~~~~ 351 (405)
..+++|++..+.. .....|++....+.. ++.+..+-+.... ....+.+.|+++.....++.|-..++
T Consensus 11 R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~ 90 (118)
T PF13778_consen 11 RLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGG 90 (118)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCc
Confidence 4567788765533 344445443334443 3555555333321 01278899999876654444444378
Q ss_pred ccccCCCCCCHHHHHHHHHHH
Q 015527 352 KKYVLNGELTLSSIKSFGEEF 372 (405)
Q Consensus 352 ~~y~~~~~~~~~~l~~Fi~~~ 372 (405)
.+-..+..++.++|...|+.+
T Consensus 91 vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 91 VKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred EEEecCCCCCHHHHHHHHhCC
Confidence 888888899999999999864
No 325
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.35 E-value=2.4 Score=36.87 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=26.3
Q ss_pred HHHhCCCcccceEEEEeCCeeeeeecCCCCHHHHHHHHHhh
Q 015527 119 LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (405)
Q Consensus 119 ~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (405)
+++++|+.++||+++-.. .+.|..+.++|.+.|...
T Consensus 207 ~a~~~gv~gTPt~~v~~~-----~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 207 LAQQLGVNGTPTFIVNGK-----LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHhcCCCcCCeEEECCe-----eecCCCCHHHHHHHHHHh
Confidence 345678999999865332 778888888888877654
No 326
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=89.26 E-value=5.4 Score=28.84 Aligned_cols=75 Identities=15% Similarity=0.062 Sum_probs=52.0
Q ss_pred CCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCe-eeeeecCCCCHH
Q 015527 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV-RQFQFFGERTRD 150 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~~g~~~~~ 150 (405)
.+.+.++.|..+. ..|.+....++++++.-. ++.+-..+... ..|++.+.++|+ .-.+|.|-..-.
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd-kI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~Gh 84 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSD-KITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGH 84 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC-ceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCch
Confidence 3456666777665 899998888888877643 55554333211 379999988763 348899988888
Q ss_pred HHHHHHHhh
Q 015527 151 VISAWVREK 159 (405)
Q Consensus 151 ~l~~~i~~~ 159 (405)
++..+|...
T Consensus 85 Ef~Slilai 93 (94)
T cd02974 85 EFTSLVLAL 93 (94)
T ss_pred hHHHHHHHh
Confidence 888887643
No 327
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=88.72 E-value=2.8 Score=32.32 Aligned_cols=68 Identities=13% Similarity=0.166 Sum_probs=44.4
Q ss_pred ccEEE-EEecCCC-cHHHHHHHHHHHHHhcC---cEEEEEEEcCCcc--h-------------------hhhhhhhcCCC
Q 015527 284 RKQLW-LFAPAYG-SDKVILTFEEVAKALKG---KLLHVYVEMNSEG--V-------------------GRRVSQEFGVS 337 (405)
Q Consensus 284 ~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~---~~~f~~id~~~~~--~-------------------~~~~~~~~gi~ 337 (405)
+++++ ++..+|. |....+.+.++++++.+ ++.++.++.+... + ...+.+.||+.
T Consensus 19 k~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 98 (131)
T cd03009 19 KTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIE 98 (131)
T ss_pred cEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCC
Confidence 34444 4566776 88888899999888864 4556666554331 0 13566778885
Q ss_pred CCCCcEEEEEeCCCcc
Q 015527 338 GNAPRVIAYSARDAKK 353 (405)
Q Consensus 338 ~~~~p~i~i~~~~~~~ 353 (405)
. .|.+++++.+|+.
T Consensus 99 ~--~P~~~lid~~G~i 112 (131)
T cd03009 99 G--IPTLIILDADGEV 112 (131)
T ss_pred C--CCEEEEECCCCCE
Confidence 4 7898898875554
No 328
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=88.67 E-value=1.7 Score=34.39 Aligned_cols=51 Identities=6% Similarity=0.163 Sum_probs=35.0
Q ss_pred EEEEecC------CChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHH----HhCCC----cccceEEE
Q 015527 77 MVMFYAN------WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA----KEYNI----LAYPTLYL 133 (405)
Q Consensus 77 ~v~f~a~------~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~----~~~~i----~~~Pt~~~ 133 (405)
+|.|+++ +|++|+.....|+.. +|.|-.+|++.+++.. +..+- ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 3456666 899999988777653 4778889988775543 33443 56788753
No 329
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=88.59 E-value=1 Score=33.14 Aligned_cols=90 Identities=14% Similarity=0.259 Sum_probs=48.3
Q ss_pred cccccccC--CccEEEEEecC-CC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCc-chhhhhhhhcCCCCCCCcEEEEEeC
Q 015527 275 NAQFVFQD--PRKQLWLFAPA-YG-SDKVILTFEEVAKALKGKLLHVYVEMNSE-GVGRRVSQEFGVSGNAPRVIAYSAR 349 (405)
Q Consensus 275 ~~~~~~~~--~~~~~i~f~~~-~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~-~~~~~~~~~~gi~~~~~p~i~i~~~ 349 (405)
.++.+... ..|.+||=.+. |. +......|++.+....+.+.++++|.-+. +....++..||+.-..|.++++. .
T Consensus 9 ql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~-~ 87 (105)
T PF11009_consen 9 QLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIK-N 87 (105)
T ss_dssp HHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEE-T
T ss_pred HHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEE-C
Confidence 34444444 22555543433 33 56777788888888887799999998877 55668899999987655555544 3
Q ss_pred CCccccC-CCCCCHHHH
Q 015527 350 DAKKYVL-NGELTLSSI 365 (405)
Q Consensus 350 ~~~~y~~-~~~~~~~~l 365 (405)
+...|.- -..++.++|
T Consensus 88 g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 88 GKVVWHASHWDITAEAL 104 (105)
T ss_dssp TEEEEEEEGGG-SHHHH
T ss_pred CEEEEECccccCCHHhc
Confidence 3333321 125666655
No 330
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=88.47 E-value=8 Score=28.37 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=73.3
Q ss_pred EcChhhHHHHHc--CCCcEEEEEecCCChhHhhhHHHHHHHHHHccC--CcEEEEEeCcccHhHH----HhCCCc-ccce
Q 015527 60 SLNGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLA----KEYNIL-AYPT 130 (405)
Q Consensus 60 ~l~~~~~~~~~~--~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~--~v~~~~v~~~~~~~~~----~~~~i~-~~Pt 130 (405)
.++.+++-+... -+...++-|--+--+.-.++.+.+.++|+.+.+ +..|+-||-++.|-+. +.|+|. .-|.
T Consensus 5 kl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~Pq 84 (120)
T cd03074 5 KLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQ 84 (120)
T ss_pred hccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCc
Confidence 455666665552 235678888888888899999999999999876 7999999999987664 345553 2498
Q ss_pred EEEEe--C-CeeeeeecCC---CCHHHHHHHHHhh
Q 015527 131 LYLFV--A-GVRQFQFFGE---RTRDVISAWVREK 159 (405)
Q Consensus 131 ~~~~~--~-g~~~~~~~g~---~~~~~l~~~i~~~ 159 (405)
+=+++ + ........+. .++++|..||...
T Consensus 85 IGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 85 IGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred eeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 88886 2 2244445444 6789999999764
No 331
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=88.47 E-value=1.2 Score=34.12 Aligned_cols=73 Identities=12% Similarity=0.028 Sum_probs=41.9
Q ss_pred CCeEEEEEEcCCCCccHHHHHHHhccC--CcceEEEe--------------------------cCHHHHhhcCCCCCCCC
Q 015527 180 ESKLVLGFLHDLEGMESEELAAASKLH--SDVNFYQT--------------------------TSADVAEFFHIHPKSKR 231 (405)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~~~~~a~~~--~~~~f~~~--------------------------~~~~l~~~~~~~~~~~~ 231 (405)
+++++|.|+..||..+......+.++. .++.+..+ ....++..|++. +.
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~---~~ 101 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY---GV 101 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC---CC
Confidence 567888999999988665544443221 12332222 233456667776 37
Q ss_pred CeEEEeecCCCccccccCCCCHHH
Q 015527 232 PALIFLHLEAGKATPFRHQFTRLA 255 (405)
Q Consensus 232 p~i~~~~~~~~~~~~y~g~~~~~~ 255 (405)
|+.+++.+.+.....+.|..+.+.
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEV 125 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHh
Confidence 866666654444556667665543
No 332
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=88.00 E-value=1.5 Score=37.83 Aligned_cols=59 Identities=12% Similarity=0.051 Sum_probs=38.3
Q ss_pred HHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCC-CcccceEEEEe
Q 015527 69 FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYN-ILAYPTLYLFV 135 (405)
Q Consensus 69 ~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~-i~~~Pt~~~~~ 135 (405)
+...+|+.++..-+.||+.|...+=.+-.+-..++. +.+.--..+. .+ -..+|++.+..
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn-~~l~~~~S~~-------~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN-FSLEYHYSDP-------YDNYPNTPTLIFNN 113 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCC-eeeEEeecCc-------ccCCCCCCeEEEec
Confidence 336789999999999999998886555555566663 3222111111 12 24589998876
No 333
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=87.77 E-value=4.1 Score=33.75 Aligned_cols=88 Identities=13% Similarity=0.109 Sum_probs=55.0
Q ss_pred CccEEE-EEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcch-hh-------------------hhhhhcCCCCCC
Q 015527 283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGV-GR-------------------RVSQEFGVSGNA 340 (405)
Q Consensus 283 ~~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~-~~-------------------~~~~~~gi~~~~ 340 (405)
+++.++ ++..||. |....+.+.+++++ .+.++.++.++... .. .+.+.||+..
T Consensus 68 gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~-- 142 (185)
T PRK15412 68 GKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG-- 142 (185)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc--
Confidence 444444 5666777 88888888887653 35555555332210 11 1223445532
Q ss_pred CcEEEEEeCCC-ccccCCCCCCHHHHHHHHHHHhcC
Q 015527 341 PRVIAYSARDA-KKYVLNGELTLSSIKSFGEEFLED 375 (405)
Q Consensus 341 ~p~i~i~~~~~-~~y~~~~~~~~~~l~~Fi~~~~~G 375 (405)
.|..++++.+| ..+...|.++.++++++++.+++.
T Consensus 143 ~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 143 APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 57777777644 457788899999999999988754
No 334
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=87.08 E-value=7.5 Score=26.48 Aligned_cols=71 Identities=20% Similarity=0.169 Sum_probs=48.2
Q ss_pred EEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCccc-HhHHHhCCCcccceEEEEeCCeeeeeecCCCCHHHHHHHH
Q 015527 79 MFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE-KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (405)
Q Consensus 79 ~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~~-~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (405)
+++.++|+.|++.+=.++. ++ .+.+..++..+. ..+.+...-..+|++. .+|..+ .+...|.+++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~-----~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l------~dS~~I~~yL 67 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEE-----KGIPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL------TDSAAIIEYL 67 (75)
T ss_dssp EEEETTSHHHHHHHHHHHH-----HTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE------ESHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHH-----cCCeEEEeccCcccchhHHHhhcccccceEEE--ECCEEE------eCHHHHHHHH
Confidence 4678999999998644433 32 455666665553 5566666778899986 557432 2778899999
Q ss_pred HhhhcC
Q 015527 157 REKMTL 162 (405)
Q Consensus 157 ~~~~~~ 162 (405)
.+..+.
T Consensus 68 ~~~~~~ 73 (75)
T PF13417_consen 68 EERYPG 73 (75)
T ss_dssp HHHSTS
T ss_pred HHHcCC
Confidence 887654
No 335
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=86.96 E-value=4.6 Score=31.25 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=43.2
Q ss_pred EEEEEecCCC-cHHHHHHHHHHHHHhcC---cEEEEEEEcCCcc-----------------h-----hhhhhhhcCCCCC
Q 015527 286 QLWLFAPAYG-SDKVILTFEEVAKALKG---KLLHVYVEMNSEG-----------------V-----GRRVSQEFGVSGN 339 (405)
Q Consensus 286 ~~i~f~~~~~-~~~~~~~~~~va~~~~~---~~~f~~id~~~~~-----------------~-----~~~~~~~~gi~~~ 339 (405)
++.++..||. |....+.++++++++++ ++.++.++.+... + ...+.+.||+..
T Consensus 21 ll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~- 99 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEG- 99 (132)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCCCC-
Confidence 3445567777 89999999999988875 3666666554321 0 123445577754
Q ss_pred CCcEEEEEeCCCccc
Q 015527 340 APRVIAYSARDAKKY 354 (405)
Q Consensus 340 ~~p~i~i~~~~~~~y 354 (405)
.|.+++++.+|+..
T Consensus 100 -iPt~~lid~~G~iv 113 (132)
T cd02964 100 -IPTLVVLKPDGDVV 113 (132)
T ss_pred -CCEEEEECCCCCEE
Confidence 68888887655433
No 336
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=86.36 E-value=10 Score=30.80 Aligned_cols=92 Identities=13% Similarity=0.155 Sum_probs=55.7
Q ss_pred ccEEE-EEecCCC-cHHHHHHHHHHHHHhc-CcEEEEEEEcCCc---------ch-----------------hhhhhhhc
Q 015527 284 RKQLW-LFAPAYG-SDKVILTFEEVAKALK-GKLLHVYVEMNSE---------GV-----------------GRRVSQEF 334 (405)
Q Consensus 284 ~~~~i-~f~~~~~-~~~~~~~~~~va~~~~-~~~~f~~id~~~~---------~~-----------------~~~~~~~~ 334 (405)
++.++ ++..+|. |......+.++..++. .++.|+-+..+.. .+ ...+.+.|
T Consensus 26 k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 105 (171)
T cd02969 26 KALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKAY 105 (171)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHHc
Confidence 34334 4445554 6666778888888887 3577777755431 00 11234455
Q ss_pred CCCCCCCcEEEEEeCCCc-ccc--CC-------CCCCHHHHHHHHHHHhcCce
Q 015527 335 GVSGNAPRVIAYSARDAK-KYV--LN-------GELTLSSIKSFGEEFLEDKL 377 (405)
Q Consensus 335 gi~~~~~p~i~i~~~~~~-~y~--~~-------~~~~~~~l~~Fi~~~~~Gkl 377 (405)
|+.. .|.+++++.+|+ .|. ++ +..+.+.+.+-|+.+++|+-
T Consensus 106 ~v~~--~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 106 GAAC--TPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred CCCc--CCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 6643 588888887443 232 11 23567889999999999843
No 337
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=85.98 E-value=2.4 Score=29.67 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=49.1
Q ss_pred EEEEecC-CC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCc--cccCCCCCCH
Q 015527 287 LWLFAPA-YG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAK--KYVLNGELTL 362 (405)
Q Consensus 287 ~i~f~~~-~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~--~y~~~~~~~~ 362 (405)
+++|... |. |+.....+..++.... +.+..+|.++.+ .+...||.. .|++.+-+.... .......++.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~---~l~~~Y~~~---IPVl~~~~~~~~~~~~~~~~~~d~ 73 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDP---ELFEKYGYR---IPVLHIDGIRQFKEQEELKWRFDE 73 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTH---HHHHHSCTS---TSEEEETT-GGGCTSEEEESSB-H
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCH---HHHHHhcCC---CCEEEEcCcccccccceeCCCCCH
Confidence 3455543 33 7787777776554444 778888888754 788999974 788877653111 2334557899
Q ss_pred HHHHHHHH
Q 015527 363 SSIKSFGE 370 (405)
Q Consensus 363 ~~l~~Fi~ 370 (405)
+.|.+|++
T Consensus 74 ~~L~~~L~ 81 (81)
T PF05768_consen 74 EQLRAWLE 81 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999985
No 338
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.88 E-value=1.1 Score=37.37 Aligned_cols=62 Identities=16% Similarity=0.064 Sum_probs=49.8
Q ss_pred cEEE-EEecCCC-cHHHHHHHHHHHHHhcC-cEEEEEEEcCCcchhhhhhhhcCCCC----CCCcEEEEEeC
Q 015527 285 KQLW-LFAPAYG-SDKVILTFEEVAKALKG-KLLHVYVEMNSEGVGRRVSQEFGVSG----NAPRVIAYSAR 349 (405)
Q Consensus 285 ~~~i-~f~~~~~-~~~~~~~~~~va~~~~~-~~~f~~id~~~~~~~~~~~~~~gi~~----~~~p~i~i~~~ 349 (405)
.++| +|+.|+. |....+.+-+++.+|.. .++|+.+|...++ .....|+++. .++|.++++..
T Consensus 146 ~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfp---d~a~kfris~s~~srQLPT~ilFq~ 214 (265)
T KOG0914|consen 146 YWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFP---DVAAKFRISLSPGSRQLPTYILFQK 214 (265)
T ss_pred EEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCc---ChHHheeeccCcccccCCeEEEEcc
Confidence 4444 6777765 88999999999999985 4999999999876 7788999874 34799988875
No 339
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=85.81 E-value=4.5 Score=43.46 Aligned_cols=90 Identities=20% Similarity=0.154 Sum_probs=62.3
Q ss_pred CccE-EEEEecCCC-cHHHHHHHHHHHHHhcCc-EEEEEEEc---CC--c--c-----------------hhhhhhhhcC
Q 015527 283 PRKQ-LWLFAPAYG-SDKVILTFEEVAKALKGK-LLHVYVEM---NS--E--G-----------------VGRRVSQEFG 335 (405)
Q Consensus 283 ~~~~-~i~f~~~~~-~~~~~~~~~~va~~~~~~-~~f~~id~---~~--~--~-----------------~~~~~~~~~g 335 (405)
++++ +-+++.||. |....+.|++++++|+++ +.++-+.. ++ . . -...+.+.|+
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~ 499 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELG 499 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcC
Confidence 3444 446778887 999999999999999875 66665531 11 0 0 0123456667
Q ss_pred CCCCCCcEEEEEeCCCc-cccCCCCCCHHHHHHHHHHHhc
Q 015527 336 VSGNAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEFLE 374 (405)
Q Consensus 336 i~~~~~p~i~i~~~~~~-~y~~~~~~~~~~l~~Fi~~~~~ 374 (405)
+. ..|.+++++.+|+ ...+.|....+.+.++++..+.
T Consensus 500 V~--~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 500 VS--SWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CC--ccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 64 3789999987444 4557888899999999998764
No 340
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=85.48 E-value=4.5 Score=27.67 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=42.0
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEe--CCeeeeeecCCCCHHHHHH
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV--AGVRQFQFFGERTRDVISA 154 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~--~g~~~~~~~g~~~~~~l~~ 154 (405)
+..|+.+.|+.|++.+-.+.+..- .+....++....+++ +.-+-..+|++..-. +|.. -.+...|.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi----~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~------l~eS~~I~~ 70 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGI----PYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQ------LVDSSVIIS 70 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC----ceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccE------EEcHHHHHH
Confidence 346778999999998855544321 222333333222333 334556789886542 2311 236778888
Q ss_pred HHHhhhc
Q 015527 155 WVREKMT 161 (405)
Q Consensus 155 ~i~~~~~ 161 (405)
++.+.++
T Consensus 71 yL~~~~~ 77 (77)
T cd03040 71 TLKTYLG 77 (77)
T ss_pred HHHHHcC
Confidence 8887653
No 341
>PHA02125 thioredoxin-like protein
Probab=85.29 E-value=3.2 Score=28.41 Aligned_cols=49 Identities=10% Similarity=0.035 Sum_probs=36.1
Q ss_pred EEEEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEE
Q 015527 286 QLWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIA 345 (405)
Q Consensus 286 ~~i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~ 345 (405)
+++++.+|+. |+...+.|.+++ +.++.+|.+.. ..+.+.|++.. .|.+.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~---~~l~~~~~v~~--~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEG---VELTAKHHIRS--LPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCC---HHHHHHcCCce--eCeEE
Confidence 4567788887 888888887653 34677777664 48889999975 67775
No 342
>PHA03075 glutaredoxin-like protein; Provisional
Probab=84.73 E-value=1.8 Score=32.08 Aligned_cols=36 Identities=11% Similarity=0.337 Sum_probs=29.1
Q ss_pred CcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeC
Q 015527 74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113 (405)
Q Consensus 74 ~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~ 113 (405)
+.+++.|-.|.|+-|.-....+.++..+| .+.+||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY----~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY----DILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc----cEEEEEe
Confidence 56899999999999999888887666665 4677774
No 343
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=83.87 E-value=1.4 Score=32.65 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=24.0
Q ss_pred EEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCccc
Q 015527 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (405)
Q Consensus 78 v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~ 116 (405)
..|+.++|+.|++....+++. ++.|-.+|..++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~ 34 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKE 34 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccC
Confidence 468899999999987666652 466666776554
No 344
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=82.25 E-value=5.6 Score=26.67 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=35.8
Q ss_pred EEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeeeeeecCCCCHHHHHHHHH
Q 015527 79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVR 157 (405)
Q Consensus 79 ~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 157 (405)
+++.++|++|++.+-.+....- .+....++........+..+-..+|++.. ++|.. -.+...|.+|+.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl----~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~------l~es~aI~~yL~ 70 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI----PVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSF------MAESLDIVAFID 70 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC----CeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeE------eehHHHHHHHHh
Confidence 5678899999987755554322 23333444333222333334456788732 33522 234566666654
No 345
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=82.21 E-value=8.5 Score=25.61 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=43.5
Q ss_pred EEEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcc-hhhhhhhhcCCCCCCCcEEEEEeCCCccccCCCCCCHHH
Q 015527 287 LWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEG-VGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSS 364 (405)
Q Consensus 287 ~i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~-~~~~~~~~~gi~~~~~p~i~i~~~~~~~y~~~~~~~~~~ 364 (405)
.++..+++. |......|.+ ..+.|..+|.++.. ...++++.+|... .|++++. +.. +.| .+++.
T Consensus 3 ~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~--vP~~~~~---~~~--~~g-~~~~~ 68 (74)
T TIGR02196 3 KVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRG--VPVIVIG---HKI--IVG-FDPEK 68 (74)
T ss_pred EEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCc--ccEEEEC---CEE--Eee-CCHHH
Confidence 345556666 7776655554 24778888887652 1234566777753 7888774 222 444 57788
Q ss_pred HHHHHH
Q 015527 365 IKSFGE 370 (405)
Q Consensus 365 l~~Fi~ 370 (405)
|.+|++
T Consensus 69 i~~~i~ 74 (74)
T TIGR02196 69 LDQLLE 74 (74)
T ss_pred HHHHhC
Confidence 888874
No 346
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=81.78 E-value=2.9 Score=31.72 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=26.0
Q ss_pred EEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHh
Q 015527 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD 118 (405)
Q Consensus 78 v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~ 118 (405)
..|+.++|+.|++....+++ .++.+-.+|..+++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~~ 36 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA------NGIEYQFIDIGEDGP 36 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH------cCCceEEEecCCChh
Confidence 35789999999998877665 156777788766543
No 347
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=80.68 E-value=21 Score=30.92 Aligned_cols=91 Identities=10% Similarity=-0.020 Sum_probs=53.8
Q ss_pred ccEE-EEEecCCC-cHHHHHHHHHHHHHhcCc-EEEEEEEcCC-------c-chhhhhh-hhcCCCC-------------
Q 015527 284 RKQL-WLFAPAYG-SDKVILTFEEVAKALKGK-LLHVYVEMNS-------E-GVGRRVS-QEFGVSG------------- 338 (405)
Q Consensus 284 ~~~~-i~f~~~~~-~~~~~~~~~~va~~~~~~-~~f~~id~~~-------~-~~~~~~~-~~~gi~~------------- 338 (405)
++++ .++..||. |....+.|+++.++++++ +.++-++++. . .-...++ +.+|++-
T Consensus 100 K~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~~~ 179 (236)
T PLN02399 100 KVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPST 179 (236)
T ss_pred CeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcchh
Confidence 4444 45667777 778888999999999865 7777766531 0 0012222 2333310
Q ss_pred -------------------CCCcEEEEEeCCCc-cccCCCCCCHHHHHHHHHHHhc
Q 015527 339 -------------------NAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEFLE 374 (405)
Q Consensus 339 -------------------~~~p~i~i~~~~~~-~y~~~~~~~~~~l~~Fi~~~~~ 374 (405)
...|..++++.+|+ .+.+.|..+.++|++.|+.+++
T Consensus 180 ~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 180 APVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred hHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 00244555665443 4456677788888888887764
No 348
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=80.51 E-value=25 Score=27.30 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=51.1
Q ss_pred cEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCc----ccceEEEEeCCeeeeeecCCCCHH
Q 015527 75 NVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL----AYPTLYLFVAGVRQFQFFGERTRD 150 (405)
Q Consensus 75 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~----~~Pt~~~~~~g~~~~~~~g~~~~~ 150 (405)
.-++.+++|.|+=|..+...++. ..+.+-.+..++-..+-+++||. +--|. +-+| .-..|-.-++
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~--VI~G---y~vEGHVPa~ 94 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTA--VING---YYVEGHVPAE 94 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHHHHHHhcCCChhhccccEE--EEcC---EEEeccCCHH
Confidence 45677899999999887665551 25777777777777888888875 22332 2244 2345777888
Q ss_pred HHHHHHHhhh
Q 015527 151 VISAWVREKM 160 (405)
Q Consensus 151 ~l~~~i~~~~ 160 (405)
++..++.+.-
T Consensus 95 aI~~ll~~~p 104 (149)
T COG3019 95 AIARLLAEKP 104 (149)
T ss_pred HHHHHHhCCC
Confidence 8888877554
No 349
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=80.50 E-value=6.2 Score=30.45 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=36.5
Q ss_pred eCcccHhHHHhCCCcccceEEEEeCCe-----------eeeeecCCCCHHHHHHHHHhh
Q 015527 112 DAYLEKDLAKEYNILAYPTLYLFVAGV-----------RQFQFFGERTRDVISAWVREK 159 (405)
Q Consensus 112 ~~~~~~~~~~~~~i~~~Pt~~~~~~g~-----------~~~~~~g~~~~~~l~~~i~~~ 159 (405)
+..-+|.+.++|+|+..|++++.+++. ......|..+.+.-.+.+.+.
T Consensus 56 ~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 56 GVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred cEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 344578999999999999999998662 245566888877777776644
No 350
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=80.49 E-value=10 Score=33.68 Aligned_cols=156 Identities=12% Similarity=0.049 Sum_probs=82.7
Q ss_pred CcccHhHHHhCCCcccceEEEEeCCeeeeeecCCCCHHHHHHHHHhhhcCCccccCChhHHHHHhc----cCCeEEEEEE
Q 015527 113 AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILT----VESKLVLGFL 188 (405)
Q Consensus 113 ~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~l~----~~~~~~v~f~ 188 (405)
|+-.++.+++++|.-+|-.+.+++. .... .-..+.+++.+.+.+.-..+-+.-.+..++.+..+ ..+.+++.-.
T Consensus 9 ~dl~~~~~~~~~I~vvPl~I~~~~~-~y~D-~~~i~~~~~y~~~~~~~~~p~TS~ps~~~~~~~~~~l~~~~~~vi~i~i 86 (275)
T TIGR00762 9 ADLPPELIEEYGITVVPLTVIIDGK-TYRD-GVDITPEEFYEKLKESKELPKTSQPSPGEFLELYEKLLEEGDEVLSIHL 86 (275)
T ss_pred cCCCHHHHHHcCCEEEEEEEEECCE-Eeec-CCCCCHHHHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHhCCCeEEEEEc
Confidence 4455788899999999999888643 2222 22478999999987643333344445565555543 4444333333
Q ss_pred cCCCCccHHHHHHHhccCCcceEEEecCHHHHhhcCCCCCCCCCeEEEeecCCCccccccCCCCHHHHHHHHhccCCCCc
Q 015527 189 HDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLV 268 (405)
Q Consensus 189 ~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~~~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v 268 (405)
.+.-+..+.....+++..++.++..+++..+....+.- +... ........+.+++.+|++..+.-..
T Consensus 87 Ss~lSgty~~a~~aa~~~~~~~i~ViDS~~~s~~~g~~---------v~~a----~~~~~~G~s~~eI~~~l~~~~~~~~ 153 (275)
T TIGR00762 87 SSGLSGTYQSARQAAEMVDEAKVTVIDSKSASMGLGLL---------VLEA----AKLAEEGKSLEEILAKLEELRERTK 153 (275)
T ss_pred CCchhHHHHHHHHHHhhCCCCCEEEECChHHHHHHHHH---------HHHH----HHHHHcCCCHHHHHHHHHHHHhhcE
Confidence 33334455666666654444456655554433322211 0000 0011112356777777776555544
Q ss_pred cccccccccccccCC
Q 015527 269 VTLTIHNAQFVFQDP 283 (405)
Q Consensus 269 ~~l~~~~~~~~~~~~ 283 (405)
..+..+++..+..++
T Consensus 154 ~~f~v~~L~~L~~gG 168 (275)
T TIGR00762 154 LYFVVDTLEYLVKGG 168 (275)
T ss_pred EEEEECcHHHHHhcC
Confidence 555555555444443
No 351
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=80.38 E-value=23 Score=26.78 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=49.4
Q ss_pred HHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCcc----ccCCCCCCHHHHHHHHHHHhcC
Q 015527 305 EVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKK----YVLNGELTLSSIKSFGEEFLED 375 (405)
Q Consensus 305 ~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~~----y~~~~~~~~~~l~~Fi~~~~~G 375 (405)
++.+-.+.++.+.-.|....+ +.+++..+++.. .|.+++...++.. -.+.|..+++++..-++.+.+.
T Consensus 44 ~v~~~ln~~fv~w~~dv~~~e-g~~la~~l~~~~--~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 44 EVIEYINTRMLFWACSVAKPE-GYRVSQALRERT--YPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred HHHHHHHcCEEEEEEecCChH-HHHHHHHhCCCC--CCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 445555567877777888776 788989999874 6888887553222 2468899999999888877653
No 352
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=80.33 E-value=23 Score=26.83 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=56.4
Q ss_pred HHHcCCCcEEEEEe-cCCChhHhhhHHHHHHHHHHccC-CcEEEEEeC-ccc-----------HhHHHhCCCcc-cceEE
Q 015527 68 EFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDA-YLE-----------KDLAKEYNILA-YPTLY 132 (405)
Q Consensus 68 ~~~~~~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~-~~~-----------~~~~~~~~i~~-~Pt~~ 132 (405)
+...++++++| |- +..-+.-+.....+.+....+.. ++.++.+-- ... ..+.+.|++.. .-+++
T Consensus 5 ~~~w~~R~lvv-~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~v 83 (118)
T PF13778_consen 5 QFRWKNRLLVV-FAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVV 83 (118)
T ss_pred HhcCcCceEEE-ECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEE
Confidence 33344454444 43 23344556666667665555655 566665532 222 26778888653 23444
Q ss_pred EE-eCCeeeeeecCCCCHHHHHHHHHhh
Q 015527 133 LF-VAGVRQFQFFGERTRDVISAWVREK 159 (405)
Q Consensus 133 ~~-~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (405)
++ ++|.+..++.++.+.++|.+.|..+
T Consensus 84 LiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 84 LIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred EEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 45 4898999999999999999988765
No 353
>PTZ00056 glutathione peroxidase; Provisional
Probab=79.93 E-value=14 Score=31.00 Aligned_cols=93 Identities=11% Similarity=-0.010 Sum_probs=55.3
Q ss_pred ccEEE-EEecCCC-cHHHHHHHHHHHHHhcCc-EEEEEEEcCC--------cchhhhhhhhcCCCCC-------------
Q 015527 284 RKQLW-LFAPAYG-SDKVILTFEEVAKALKGK-LLHVYVEMNS--------EGVGRRVSQEFGVSGN------------- 339 (405)
Q Consensus 284 ~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~-~~f~~id~~~--------~~~~~~~~~~~gi~~~------------- 339 (405)
+++++ +.+.||. |....+.+.++.+++.++ +.++-++++. ..-...+++.+|++-.
T Consensus 40 kvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~~~ 119 (199)
T PTZ00056 40 KVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGENTH 119 (199)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCccC
Confidence 34444 4455666 777888899999998764 7777775421 1112344455554200
Q ss_pred ---------------------CC---cEEEEEeCCCc-cccCCCCCCHHHHHHHHHHHhcCc
Q 015527 340 ---------------------AP---RVIAYSARDAK-KYVLNGELTLSSIKSFGEEFLEDK 376 (405)
Q Consensus 340 ---------------------~~---p~i~i~~~~~~-~y~~~~~~~~~~l~~Fi~~~~~Gk 376 (405)
.. |..++++.+|+ .+.+.+..+.+.+.+.|+..++.+
T Consensus 120 ~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~ 181 (199)
T PTZ00056 120 ELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVK 181 (199)
T ss_pred HHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 01 13445555443 344567778888999898888773
No 354
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=79.20 E-value=18 Score=24.78 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=39.5
Q ss_pred EEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCccc----HhHHHhCCCcccceEEEEeCCeeeeeecCCCCHHHHH
Q 015527 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE----KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS 153 (405)
Q Consensus 78 v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~----~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 153 (405)
..++.++|+.|++.+-.+.+. ++.+-.+++... +++.+.-+-..+|++..-++| .. ..+...|.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~-~~-----l~es~~I~ 70 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTG-VQ-----MFESADIV 70 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCC-eE-----EEcHHHHH
Confidence 456778999999876555443 244444554432 233333355678987432234 11 23567777
Q ss_pred HHHHhh
Q 015527 154 AWVREK 159 (405)
Q Consensus 154 ~~i~~~ 159 (405)
+++.+.
T Consensus 71 ~yL~~~ 76 (77)
T cd03041 71 KYLFKT 76 (77)
T ss_pred HHHHHh
Confidence 777653
No 355
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=79.07 E-value=5.8 Score=26.66 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=32.5
Q ss_pred EEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCccc-HhHHHhCCCcccceEE
Q 015527 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-KDLAKEYNILAYPTLY 132 (405)
Q Consensus 78 v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~-~~~~~~~~i~~~Pt~~ 132 (405)
+.|+.+||+.|++.+-.+.+..- .+.+..+|.... +++.+......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 45778999999987655544321 455666665432 4555555667889984
No 356
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=78.99 E-value=3.2 Score=31.13 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=24.8
Q ss_pred EEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccH
Q 015527 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117 (405)
Q Consensus 78 v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~ 117 (405)
..|+.++|+.|++....+++- ++.|-.+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCCc
Confidence 457889999999988766652 4667777776543
No 357
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=78.08 E-value=32 Score=28.48 Aligned_cols=86 Identities=17% Similarity=0.254 Sum_probs=58.5
Q ss_pred CcEEEEEe-cCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc----------------------------cHhHHHhC
Q 015527 74 RNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAKEY 123 (405)
Q Consensus 74 ~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~~~ 123 (405)
+.+++.|| ++.-.-|-.+...|.+.+.+++. ++.++.+.+|. +.++|+.|
T Consensus 34 kw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~y 113 (194)
T COG0450 34 KWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAY 113 (194)
T ss_pred cEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHc
Confidence 66666666 45567777888889999888877 77777776643 45688888
Q ss_pred CCcc------cceEEEEe-CCeeee--eec--CCCCHHHHHHHHHhh
Q 015527 124 NILA------YPTLYLFV-AGVRQF--QFF--GERTRDVISAWVREK 159 (405)
Q Consensus 124 ~i~~------~Pt~~~~~-~g~~~~--~~~--g~~~~~~l~~~i~~~ 159 (405)
|+.. .=.+++++ +|.+.. .+. -.++.+++.+-+..+
T Consensus 114 gvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 114 GVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred CCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 8753 23567777 775432 222 257888888877644
No 358
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=77.42 E-value=4 Score=30.36 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=42.8
Q ss_pred EEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc
Q 015527 59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL 115 (405)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~ 115 (405)
.+++++.++-.--+++++||.=.|+-|+.-. -...++++.++|++ ++.++..-|.+
T Consensus 7 ~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 7 KDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp EBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred eCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 3444444443335789999989999999888 67799999999986 78888888864
No 359
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=77.22 E-value=12 Score=30.88 Aligned_cols=76 Identities=12% Similarity=0.125 Sum_probs=59.6
Q ss_pred CCccccCChhHHHHHhccCCeEEEEEEcCC---CCccHHHHHHHhccCCcceEEEe---cCHHHHhhcCCCCCCCCCeEE
Q 015527 162 LGTYSITTTDEAERILTVESKLVLGFLHDL---EGMESEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALI 235 (405)
Q Consensus 162 ~~~~~i~~~~~~~~~l~~~~~~~v~f~~~~---~~~~~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~~~~~~~~p~i~ 235 (405)
.....+.++.++-.....+..+++-||.+. |.-.-+-+..+|+..-..+|..+ ..+=++.+++|+- .|+++
T Consensus 66 G~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkV---LP~v~ 142 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKV---LPTVA 142 (211)
T ss_pred ceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeE---eeeEE
Confidence 457788889999888888888888898765 44466667888877778888876 3444788999985 89999
Q ss_pred EeecC
Q 015527 236 FLHLE 240 (405)
Q Consensus 236 ~~~~~ 240 (405)
+|.++
T Consensus 143 l~k~g 147 (211)
T KOG1672|consen 143 LFKNG 147 (211)
T ss_pred EEEcC
Confidence 99975
No 360
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=76.90 E-value=8.3 Score=28.99 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeC
Q 015527 90 KLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (405)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 136 (405)
.+.+....+.+.....-.- .+..-+|.+.++|+|+..|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 4555555554444331111 33445789999999999999999887
No 361
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=76.70 E-value=12 Score=27.70 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=34.6
Q ss_pred CccEEE-EEecCCC-cHHHHHHHHHHHHHhcCcEEEEEE-EcCCcchhhhhhhhcCCC
Q 015527 283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKLLHVYV-EMNSEGVGRRVSQEFGVS 337 (405)
Q Consensus 283 ~~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~i-d~~~~~~~~~~~~~~gi~ 337 (405)
+++.++ ++.+||. |.+..+.++++++++.+++.++.+ |.+... ...+++.+++.
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~-~~~~~~~~~~~ 77 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAE-HQRFLKKHGLE 77 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHH-HHHHHHHhCCC
Confidence 344444 5556777 888899999999888776655544 222222 44566777764
No 362
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=75.77 E-value=5.1 Score=31.09 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=24.6
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccH
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~ 117 (405)
+..|+.++|+.|++....+++- ++.|-.+|..+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCCh
Confidence 4567889999999987655442 4667777766554
No 363
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=74.73 E-value=8.4 Score=28.56 Aligned_cols=76 Identities=17% Similarity=0.279 Sum_probs=51.7
Q ss_pred cccccccccccccCCccEEEEEecCCC----cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEE
Q 015527 269 VTLTIHNAQFVFQDPRKQLWLFAPAYG----SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVI 344 (405)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~i~f~~~~~----~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i 344 (405)
++++..++......+...+++|..... ..+..-++=++.+.+.+.+..+.++... ...+...||+.. .|++
T Consensus 12 ~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~---e~~L~~r~gv~~--~PaL 86 (107)
T PF07449_consen 12 PRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAA---ERALAARFGVRR--WPAL 86 (107)
T ss_dssp EEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHH---HHHHHHHHT-TS--SSEE
T ss_pred eeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchh---HHHHHHHhCCcc--CCeE
Confidence 445556666666655556666665432 4466667889999999999988887443 458899999965 7898
Q ss_pred EEEeC
Q 015527 345 AYSAR 349 (405)
Q Consensus 345 ~i~~~ 349 (405)
+++..
T Consensus 87 vf~R~ 91 (107)
T PF07449_consen 87 VFFRD 91 (107)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 88864
No 364
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=74.57 E-value=47 Score=27.61 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=59.2
Q ss_pred CCccccCChhHHHHHhcc-CCeEEEEEEcCCCCc----cHHHHHHHhccCCcceEEEecCHHHHhhcCCCCCCCCCeEEE
Q 015527 162 LGTYSITTTDEAERILTV-ESKLVLGFLHDLEGM----ESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIF 236 (405)
Q Consensus 162 ~~~~~i~~~~~~~~~l~~-~~~~~v~f~~~~~~~----~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~~~~~~~~p~i~~ 236 (405)
..+..|+..+-..+.... ...|||+-.....-+ ....+..+|.....++|..+.......-|--. ..|+|++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cIpNYPe~---nlPTl~V 167 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCIPNYPES---NLPTLLV 167 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccccCCCccc---CCCeEEE
Confidence 456677666655555543 456666655443333 44556677777788899877554444444433 3799999
Q ss_pred eecCCCc-----cccccCC-CCHHHHHHHHhc
Q 015527 237 LHLEAGK-----ATPFRHQ-FTRLAIANFVTH 262 (405)
Q Consensus 237 ~~~~~~~-----~~~y~g~-~~~~~l~~fi~~ 262 (405)
|..+.-+ ...+.|. .+.+++..++-+
T Consensus 168 Y~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 168 YHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred eecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 9986521 2333444 455777777654
No 365
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=74.11 E-value=3.2 Score=30.77 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=23.6
Q ss_pred EEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCccc
Q 015527 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (405)
Q Consensus 78 v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~ 116 (405)
..|+.++|+.|++....+++- ++.|-.+|..++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence 468899999999987666542 466666666554
No 366
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=73.79 E-value=5.4 Score=33.94 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=37.3
Q ss_pred cCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC----CcEEEEEeCc
Q 015527 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG----EADLVMVDAY 114 (405)
Q Consensus 71 ~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~----~v~~~~v~~~ 114 (405)
..|.++||-+-..+|..|..-...++.|..++.. +|.|+.||-.
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 3578999999999999999999999999887755 7899999854
No 367
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=71.76 E-value=8.5 Score=31.76 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=33.7
Q ss_pred HhHHHhCCCcccceEEEEeCCeeeeeecC--CCCHHHHHHHHHhhh
Q 015527 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFG--ERTRDVISAWVREKM 160 (405)
Q Consensus 117 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g--~~~~~~l~~~i~~~~ 160 (405)
..+++++++.++||+.+-++|+...--.| ..+.+.+..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 46788999999999999999955444445 356688888877654
No 368
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=71.67 E-value=3 Score=29.25 Aligned_cols=55 Identities=24% Similarity=0.265 Sum_probs=43.2
Q ss_pred EecCCChhHhhhHHHHHHHHHHc-cCCcEEEEEeCcccHhHHHhCCCcccceEEEE
Q 015527 80 FYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (405)
Q Consensus 80 f~a~~C~~C~~~~~~~~~~~~~~-~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 134 (405)
|-+..-+.+......+..+.+.. ++.+.+-.||..++|.+++.++|-.+||++-.
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik~ 58 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIKE 58 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHTT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEeec
Confidence 33444456677788888887764 44899999999999999999999999997533
No 369
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=70.70 E-value=37 Score=31.65 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=58.8
Q ss_pred CCCcEEEEEecCCChhHhhhHH-HH-HHH-HHHccCCcEEEEEeCcc--cHhHHHhCCCcccceEEEEe-CCeeeeeecC
Q 015527 72 KNRNVMVMFYANWCYWSKKLAP-EF-AAA-AKMLKGEADLVMVDAYL--EKDLAKEYNILAYPTLYLFV-AGVRQFQFFG 145 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~-~~-~~~-~~~~~~~v~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g 145 (405)
.++.++|.|-+..-....++.. .| +.. +..+...+..++|+... ...+..-|-+..+|+++++. .|.......|
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevitg 96 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVITG 96 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEeec
Confidence 4556666676665555555542 22 222 22222245555555432 34566778889999999997 8988899999
Q ss_pred CCCHHHHHHHHHhhh
Q 015527 146 ERTRDVISAWVREKM 160 (405)
Q Consensus 146 ~~~~~~l~~~i~~~~ 160 (405)
...+++|..-|.+..
T Consensus 97 ~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 97 FVTADELASSIEKVW 111 (506)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999998888765
No 370
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=70.57 E-value=3.1 Score=34.20 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=15.3
Q ss_pred HhHHHhCCCcccceEEEEe--CCeeeeeecCCCCHHHH
Q 015527 117 KDLAKEYNILAYPTLYLFV--AGVRQFQFFGERTRDVI 152 (405)
Q Consensus 117 ~~~~~~~~i~~~Pt~~~~~--~g~~~~~~~g~~~~~~l 152 (405)
-.++++++|+++||+++++ ++.......|..+.+.+
T Consensus 137 ~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~~ 174 (176)
T PF13743_consen 137 QQLAREMGITGFPTLVIFNENNEEYGILIEGYYSYEVY 174 (176)
T ss_dssp HHHHHHTT-SSSSEEEEE--------------------
T ss_pred HHHHHHcCCCCCCEEEEEeccccccccccccccccccc
Confidence 4678899999999999998 33345566666655544
No 371
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=70.23 E-value=23 Score=21.95 Aligned_cols=55 Identities=13% Similarity=0.240 Sum_probs=35.9
Q ss_pred EEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhh---hcCCCCCCCcEEEEEeC
Q 015527 289 LFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQ---EFGVSGNAPRVIAYSAR 349 (405)
Q Consensus 289 ~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~---~~gi~~~~~p~i~i~~~ 349 (405)
++..++. |......+.++ .....++.+..++.+... .... .+++. ..|.+++.+.
T Consensus 4 ~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~P~~~~~~~ 62 (69)
T cd01659 4 FYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDP---ALEKELKRYGVG--GVPTLVVFGP 62 (69)
T ss_pred EECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCCh---HHhhHHHhCCCc--cccEEEEEeC
Confidence 4444444 77777777777 455667999999988764 2222 44443 4788888764
No 372
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=70.09 E-value=29 Score=23.06 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=39.8
Q ss_pred EEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCccc-HhHHHhCCCcccceEEEEeCCeeeeeecCCCCHHHHHHHH
Q 015527 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (405)
Q Consensus 78 v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~-~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (405)
..|+.++|+.|++.+-.+.+..- .+....++.... +++.+......+|++. .+|.. ..+...|.+++
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~------l~es~aI~~yL 69 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV----SVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV------LYESRIIMEYL 69 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC----ccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE------EEcHHHHHHHH
Confidence 46778999999998755543322 334444554433 3444545566789663 34421 23556777776
Q ss_pred Hh
Q 015527 157 RE 158 (405)
Q Consensus 157 ~~ 158 (405)
.+
T Consensus 70 ~~ 71 (73)
T cd03059 70 DE 71 (73)
T ss_pred Hh
Confidence 54
No 373
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=70.01 E-value=35 Score=26.98 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=27.6
Q ss_pred ccEEE-EEecCCC-cHHHHHHHHHHHHHhcC--------cEEEEEEEcCC
Q 015527 284 RKQLW-LFAPAYG-SDKVILTFEEVAKALKG--------KLLHVYVEMNS 323 (405)
Q Consensus 284 ~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~--------~~~f~~id~~~ 323 (405)
+++++ |.++||. |.+..+.+.++.+++++ ++.++.++.+.
T Consensus 26 k~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~ 75 (146)
T cd03008 26 RVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ 75 (146)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC
Confidence 34444 5566776 89999999888776653 37777777664
No 374
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=67.98 E-value=10 Score=24.70 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=30.8
Q ss_pred EEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHh--HHHhCCCcccceEEE
Q 015527 79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD--LAKEYNILAYPTLYL 133 (405)
Q Consensus 79 ~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~--~~~~~~i~~~Pt~~~ 133 (405)
.|+.++|+.|++.+-.+....- .+....++...... +.+..+-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL----PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 5778899999987766655422 34444554433222 444556678897743
No 375
>PLN02412 probable glutathione peroxidase
Probab=67.36 E-value=46 Score=26.96 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=26.2
Q ss_pred ccEEE-EEecCCC-cHHHHHHHHHHHHHhcCc-EEEEEEEc
Q 015527 284 RKQLW-LFAPAYG-SDKVILTFEEVAKALKGK-LLHVYVEM 321 (405)
Q Consensus 284 ~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~~-~~f~~id~ 321 (405)
+++++ ++..+|. |......|+++.++|+++ +.++-+.+
T Consensus 30 k~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~ 70 (167)
T PLN02412 30 KVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPC 70 (167)
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecc
Confidence 34444 4467776 666778888998888864 77777754
No 376
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=67.06 E-value=37 Score=27.31 Aligned_cols=97 Identities=12% Similarity=0.190 Sum_probs=66.8
Q ss_pred CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEeCcc--------cHh----HHHh
Q 015527 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------EKD----LAKE 122 (405)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~--------~~~----~~~~ 122 (405)
-.+.+++++.++--.-.++++||.=-|+-|+.-..-...+..+.++|++ .+.++..-|.. +.+ ++.+
T Consensus 17 f~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r 96 (171)
T KOG1651|consen 17 FSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVR 96 (171)
T ss_pred eEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhc
Confidence 4456666766665556789988888899999887666789999999977 78888888853 222 3455
Q ss_pred CCCcccceEEEEe-CCeeeeeecCCCCHHHHHHHHHhhhcC
Q 015527 123 YNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMTL 162 (405)
Q Consensus 123 ~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~~ 162 (405)
|+.. +|-+-=++ +| . +++.+.+|+.+..+.
T Consensus 97 ~~~~-f~if~KidVNG--------~-~~~PlykfLK~~~~~ 127 (171)
T KOG1651|consen 97 YGAE-FPIFQKIDVNG--------D-NADPLYKFLKKVKGG 127 (171)
T ss_pred cCCC-CccEeEEecCC--------C-CCchHHHHHhhcCCC
Confidence 6544 34433333 44 2 677788888877655
No 377
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=66.91 E-value=26 Score=27.08 Aligned_cols=29 Identities=3% Similarity=-0.174 Sum_probs=21.3
Q ss_pred hHHHHHhccCCeEEEEEEcCCCCccHHHH
Q 015527 171 DEAERILTVESKLVLGFLHDLEGMESEEL 199 (405)
Q Consensus 171 ~~~~~~l~~~~~~~v~f~~~~~~~~~~~~ 199 (405)
+.+....+.+++++|.|+.+||..+...-
T Consensus 14 eal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~ 42 (130)
T cd02960 14 EGLYKAKKSNKPLMVIHHLEDCPHSQALK 42 (130)
T ss_pred HHHHHHHHCCCeEEEEEeCCcCHhHHHHH
Confidence 34455566788999999999999855543
No 378
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=65.64 E-value=15 Score=24.48 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=31.9
Q ss_pred EEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcc----cHhHHHhCCCcccceEEE
Q 015527 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYL 133 (405)
Q Consensus 78 v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~----~~~~~~~~~i~~~Pt~~~ 133 (405)
..|+.++|++|++.+-.+....- .+....++... .+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI----DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC----CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 35778899999998766655422 33444555422 234555555667899854
No 379
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=65.54 E-value=15 Score=27.60 Aligned_cols=34 Identities=6% Similarity=0.130 Sum_probs=23.9
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCccc
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~ 116 (405)
+..|+.++|+.|++....+++. ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 3457789999999987766652 456666666554
No 380
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.48 E-value=14 Score=25.03 Aligned_cols=56 Identities=18% Similarity=0.142 Sum_probs=35.8
Q ss_pred EEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCccc--------------H--hHHHhCCCcccceEEEEeCCeee
Q 015527 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE--------------K--DLAKEYNILAYPTLYLFVAGVRQ 140 (405)
Q Consensus 78 v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~--------------~--~~~~~~~i~~~Pt~~~~~~g~~~ 140 (405)
++|++..|+.|..+..+++++.- .+-.|++... + +-.+..|--++|.+.+ .+|+++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v------~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNV------DYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCC------CceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEE
Confidence 67999999999888877776533 3334444332 1 1245567778998754 455444
No 381
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=62.63 E-value=72 Score=24.89 Aligned_cols=90 Identities=10% Similarity=0.045 Sum_probs=60.2
Q ss_pred HcCCCcEEEEEecCCC----hhHhhhHHHHHHHHHHccCCcEEEEEeCcccH------------------hHHHhCCCcc
Q 015527 70 MGKNRNVMVMFYANWC----YWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK------------------DLAKEYNILA 127 (405)
Q Consensus 70 ~~~~~~~~v~f~a~~C----~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~------------------~~~~~~~i~~ 127 (405)
.++.|+.+|+.+++.- ..|++..-. +.+.+-+++++.+-.-|.+... ...+.++...
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~s-e~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~ 96 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCA-ESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQ 96 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcC-HHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCC
Confidence 3457899999998765 355554211 2233334456777777765542 2355678999
Q ss_pred cceEEEEe--CC--eeeeeecCCCCHHHHHHHHHhhh
Q 015527 128 YPTLYLFV--AG--VRQFQFFGERTRDVISAWVREKM 160 (405)
Q Consensus 128 ~Pt~~~~~--~g--~~~~~~~g~~~~~~l~~~i~~~~ 160 (405)
+|.+.++- .+ .++.+..|..+.+++..-+...+
T Consensus 97 fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 97 LPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 99999986 22 46678899999999988877554
No 382
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=62.58 E-value=17 Score=25.19 Aligned_cols=62 Identities=18% Similarity=0.118 Sum_probs=37.8
Q ss_pred CCccEEEEEe-cCCC-cHHHHHHH---HHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeC
Q 015527 282 DPRKQLWLFA-PAYG-SDKVILTF---EEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR 349 (405)
Q Consensus 282 ~~~~~~i~f~-~~~~-~~~~~~~~---~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~ 349 (405)
.++|+++.|. ++|. |+.+...+ .++.+.+.+++.++.+|.++.. ......+ ...|.++++++
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~---~~~~~~~---~~~P~~~~ldp 82 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDED---PNAQFDR---QGYPTFFFLDP 82 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHH---HHHHHHH---CSSSEEEEEET
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCC---hhHHhCC---ccCCEEEEeCC
Confidence 3456666554 4555 76666555 3555556678999999998653 2112222 23788888763
No 383
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=61.17 E-value=36 Score=28.58 Aligned_cols=100 Identities=15% Similarity=0.195 Sum_probs=62.6
Q ss_pred CccccCChhHHHHHhccC---CeEEEEEEcC---CCCccHHHHHHHhccCCcceEEEecCH--HHHhhcCCCCCCCCCeE
Q 015527 163 GTYSITTTDEAERILTVE---SKLVLGFLHD---LEGMESEELAAASKLHSDVNFYQTTSA--DVAEFFHIHPKSKRPAL 234 (405)
Q Consensus 163 ~~~~i~~~~~~~~~l~~~---~~~~v~f~~~---~~~~~~~~~~~~a~~~~~~~f~~~~~~--~l~~~~~~~~~~~~p~i 234 (405)
.+.++.+..++...++.. ...+|..|.+ .|+.......-+|.-...++|+.++.. ....+|... ..|++
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~gas~~F~~n---~lP~L 215 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGASDRFSLN---VLPTL 215 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccccchhhhccc---CCceE
Confidence 355677777777776653 2344445544 234455556667777788899877443 456677776 48999
Q ss_pred EEeecCC--Ccccc----ccCCCCHHHHHHHHhccCC
Q 015527 235 IFLHLEA--GKATP----FRHQFTRLAIANFVTHTKH 265 (405)
Q Consensus 235 ~~~~~~~--~~~~~----y~g~~~~~~l~~fi~~~~~ 265 (405)
++|+.++ +.++. +-.++...++..|++..-+
T Consensus 216 liYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gl 252 (273)
T KOG3171|consen 216 LIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGL 252 (273)
T ss_pred EEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCC
Confidence 9999764 11221 2233566788888876543
No 384
>PRK12559 transcriptional regulator Spx; Provisional
Probab=61.16 E-value=10 Score=29.44 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=23.4
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCccc
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~ 116 (405)
+..|+.++|+.|++....+++- ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEeeCC
Confidence 4568889999999987555542 455666665544
No 385
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=59.63 E-value=67 Score=24.33 Aligned_cols=38 Identities=11% Similarity=0.105 Sum_probs=26.8
Q ss_pred ccEEE-EEecCCC-cHHHHHHHHHHHHHhcC-cEEEEEEEc
Q 015527 284 RKQLW-LFAPAYG-SDKVILTFEEVAKALKG-KLLHVYVEM 321 (405)
Q Consensus 284 ~~~~i-~f~~~~~-~~~~~~~~~~va~~~~~-~~~f~~id~ 321 (405)
++.++ ++..+|. |....+.+.++.+++++ .+.++-+..
T Consensus 24 k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 24 KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 44444 5556666 88889999999999985 466666643
No 386
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.52 E-value=23 Score=30.19 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=34.2
Q ss_pred hHHHhCCCcccceEEEEeCCeeeeeecCCCCHHHHHHHHHhhhcCCc
Q 015527 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGT 164 (405)
Q Consensus 118 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~ 164 (405)
..+++.||++.|++++ ++ .....|..+.+.+..-|.+.++...
T Consensus 175 ~~A~e~gI~gVP~fv~-d~---~~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 175 AAAQEMGIRGVPTFVF-DG---KYAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHCCCccCceEEE-cC---cEeecCCCCHHHHHHHHHHHHhccc
Confidence 3567899999999988 33 3567899999999999998886443
No 387
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=56.85 E-value=13 Score=22.44 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=11.7
Q ss_pred CcchhhHHHHHHHHHHHH
Q 015527 1 MEKTKTLLLLLTSSIILF 18 (405)
Q Consensus 1 M~~~~~~~~~~~~~~ll~ 18 (405)
|+|-+|++++.+++++++
T Consensus 1 ~kk~rwiili~iv~~Cl~ 18 (47)
T PRK10299 1 MKKFRWVVLVVVVLACLL 18 (47)
T ss_pred CceeeehHHHHHHHHHHH
Confidence 788777776655555544
No 388
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=56.42 E-value=46 Score=23.16 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=45.8
Q ss_pred EEEEe-cCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcch-hhhhhhhcCCCCCCCcEEEEEeCCCccccCCCCCCHH
Q 015527 287 LWLFA-PAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGV-GRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTLS 363 (405)
Q Consensus 287 ~i~f~-~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~~-~~~~~~~~gi~~~~~p~i~i~~~~~~~y~~~~~~~~~ 363 (405)
+.+|. ++|. |......|++++.++ ..+.|..+|.+.... ..++....|......|.+++- |+.. ...+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~---g~~i-----gg~~ 73 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVD---QKHI-----GGCT 73 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEEC---CEEE-----cCHH
Confidence 34444 4555 899999999998776 457788888775411 124545555432457888763 2221 1345
Q ss_pred HHHHHHHHH
Q 015527 364 SIKSFGEEF 372 (405)
Q Consensus 364 ~l~~Fi~~~ 372 (405)
+|.++....
T Consensus 74 ~~~~~~~~~ 82 (85)
T PRK11200 74 DFEAYVKEN 82 (85)
T ss_pred HHHHHHHHh
Confidence 666665543
No 389
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=56.25 E-value=19 Score=32.52 Aligned_cols=76 Identities=11% Similarity=0.088 Sum_probs=51.3
Q ss_pred ChhHhhhHHHHHHH----HHHccC---CcEEEEEeCcccH---hHHHhCCCcc--cceEEEEeCCeeeeeecCCCCHHHH
Q 015527 85 CYWSKKLAPEFAAA----AKMLKG---EADLVMVDAYLEK---DLAKEYNILA--YPTLYLFVAGVRQFQFFGERTRDVI 152 (405)
Q Consensus 85 C~~C~~~~~~~~~~----~~~~~~---~v~~~~v~~~~~~---~~~~~~~i~~--~Pt~~~~~~g~~~~~~~g~~~~~~l 152 (405)
||.|-...-.+.+. .+.+.+ .+.++.+-|--|. ..-.++|+.+ -|...+|.+|+.+.+..+..-.+++
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~eel 343 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEEL 343 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHHH
Confidence 88887665444333 333333 4777777776542 2234566653 6899999999889998888888888
Q ss_pred HHHHHhhh
Q 015527 153 SAWVREKM 160 (405)
Q Consensus 153 ~~~i~~~~ 160 (405)
...+.++.
T Consensus 344 ~~~i~~~~ 351 (361)
T COG0821 344 EALIEAYA 351 (361)
T ss_pred HHHHHHHH
Confidence 88777665
No 390
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=56.12 E-value=1e+02 Score=24.62 Aligned_cols=41 Identities=10% Similarity=0.254 Sum_probs=31.9
Q ss_pred cCHHHHhhcCCCCCCCCCeEEEeecCCCccccccCCCCHHHHHH
Q 015527 215 TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIAN 258 (405)
Q Consensus 215 ~~~~l~~~~~~~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~ 258 (405)
+.+++++.|+++. .|++++|...+......+|-+..+.+..
T Consensus 103 s~~ELa~kf~vrs---tPtfvFfdk~Gk~Il~lPGY~ppe~Fl~ 143 (182)
T COG2143 103 STEELAQKFAVRS---TPTFVFFDKTGKTILELPGYMPPEQFLA 143 (182)
T ss_pred cHHHHHHHhcccc---CceEEEEcCCCCEEEecCCCCCHHHHHH
Confidence 4558999999994 8999999987767777788777655443
No 391
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=54.22 E-value=30 Score=23.09 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=31.6
Q ss_pred EEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcc----cHhHHHhCCCcccceEE
Q 015527 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLY 132 (405)
Q Consensus 78 v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~----~~~~~~~~~i~~~Pt~~ 132 (405)
..|+.++|+.|++.+-.+.+..- .+....++..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi----~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL----ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC----CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 36788999999987655554322 34455555422 24555555566789984
No 392
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=52.63 E-value=69 Score=22.56 Aligned_cols=53 Identities=9% Similarity=0.187 Sum_probs=32.0
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCccc-HhHHHhCCCcccceEEE
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-KDLAKEYNILAYPTLYL 133 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~-~~~~~~~~i~~~Pt~~~ 133 (405)
+..++.+.|+.|+..+-.+....- .+.+..++.... +.+.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl----~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI----PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC----CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 455678889999987654444211 455555665433 33555555677898863
No 393
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=52.49 E-value=16 Score=33.42 Aligned_cols=75 Identities=11% Similarity=0.093 Sum_probs=46.1
Q ss_pred ChhHhhhHHHHHHHHHHccC-------CcEEEEEeCcccHh---HHHhCCCc-ccc-eEEEEeCCeeeeee-cCCCCHHH
Q 015527 85 CYWSKKLAPEFAAAAKMLKG-------EADLVMVDAYLEKD---LAKEYNIL-AYP-TLYLFVAGVRQFQF-FGERTRDV 151 (405)
Q Consensus 85 C~~C~~~~~~~~~~~~~~~~-------~v~~~~v~~~~~~~---~~~~~~i~-~~P-t~~~~~~g~~~~~~-~g~~~~~~ 151 (405)
||.|-+..=.+++++++.+. .++++.+-|--|.. --.++|+. +-| ...+|++|+.+.+. ....-.+.
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~ 350 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDE 350 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHH
Confidence 77777765566666555433 68999999976632 12356666 333 47888999888888 77777788
Q ss_pred HHHHHHhh
Q 015527 152 ISAWVREK 159 (405)
Q Consensus 152 l~~~i~~~ 159 (405)
|.+.|+++
T Consensus 351 L~~~I~~~ 358 (359)
T PF04551_consen 351 LIELIEEH 358 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88877654
No 394
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=52.26 E-value=17 Score=28.22 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=23.1
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCccc
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~ 116 (405)
+..|+.++|+.|++....+++ . ++.|-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~----~--~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA----H--QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH----c--CCCeEEEECCCC
Confidence 346778999999997655543 1 466677776544
No 395
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=51.54 E-value=58 Score=25.12 Aligned_cols=72 Identities=13% Similarity=0.231 Sum_probs=37.3
Q ss_pred ChhHHHHHhcc-CCeEEEEEEcCCCCcc---HHHHHHHhccCCcceEEEe---cCHHHHhhcCCCCCCCCCeEEEeecC
Q 015527 169 TTDEAERILTV-ESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLE 240 (405)
Q Consensus 169 ~~~~~~~~l~~-~~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~~~~~~~~p~i~~~~~~ 240 (405)
+.+....+... .+..++.+..+||+.+ .+.+..+++..+.+.+..+ .+.++.+.|--....+.|+++++...
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 33444443332 4466777899999874 4456666666666665544 45556665533333468999999764
No 396
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=51.51 E-value=22 Score=29.44 Aligned_cols=28 Identities=18% Similarity=0.430 Sum_probs=24.8
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccC
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKG 104 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~ 104 (405)
+..|+-+.|+.|-...+.+.++.+.++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 5678889999999999999999999843
No 397
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=50.97 E-value=99 Score=25.22 Aligned_cols=85 Identities=18% Similarity=0.354 Sum_probs=51.6
Q ss_pred CCCcEEEEEec-CCChhHhhhHHHHHHHHHHccC-CcEEEEEeC----------------------------cccHhHHH
Q 015527 72 KNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDA----------------------------YLEKDLAK 121 (405)
Q Consensus 72 ~~~~~~v~f~a-~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~----------------------------~~~~~~~~ 121 (405)
.++.+++.||. ++---|-.+.-.|...+.+++. +..++.+.+ |.+.++|+
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Isr 111 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISR 111 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHH
Confidence 56888888884 5555676677778887777776 333444333 33567899
Q ss_pred hCCCc----c--cceEEEEe-CCeeeeee-----cCCCCHHHHHHHHH
Q 015527 122 EYNIL----A--YPTLYLFV-AGVRQFQF-----FGERTRDVISAWVR 157 (405)
Q Consensus 122 ~~~i~----~--~Pt~~~~~-~g~~~~~~-----~g~~~~~~l~~~i~ 157 (405)
+||+- + +=.+++++ +| +..+. .-.++.++..+.++
T Consensus 112 dyGvL~~~~G~~lRglfIId~~g-i~R~it~NDlpvgRSVdE~lRLvq 158 (196)
T KOG0852|consen 112 DYGVLKEDEGIALRGLFIIDPDG-ILRQITINDLPVGRSVDETLRLVQ 158 (196)
T ss_pred hcCceecCCCcceeeeEEEcccc-ceEEeeecccCCCccHHHHHHHHH
Confidence 99873 2 33455665 66 33322 12456666655554
No 398
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=50.21 E-value=49 Score=25.80 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=31.3
Q ss_pred Ccc-EEEEEec-CCC-cHHHHHHHHHHHHHhcCc-EEEEEEEcCCcchhhhhhhh
Q 015527 283 PRK-QLWLFAP-AYG-SDKVILTFEEVAKALKGK-LLHVYVEMNSEGVGRRVSQE 333 (405)
Q Consensus 283 ~~~-~~i~f~~-~~~-~~~~~~~~~~va~~~~~~-~~f~~id~~~~~~~~~~~~~ 333 (405)
+++ ++.++.. +|. |......+.+++++++++ +.++.+..++.....++++.
T Consensus 28 gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~ 82 (146)
T PF08534_consen 28 GKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK 82 (146)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH
T ss_pred CCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh
Confidence 334 4445556 676 888888899998887654 66666655544323333333
No 399
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=50.13 E-value=25 Score=24.37 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=22.2
Q ss_pred ccceEEEEe-CCeeeeeec-CCCCHHHHHHHHHhhh
Q 015527 127 AYPTLYLFV-AGVRQFQFF-GERTRDVISAWVREKM 160 (405)
Q Consensus 127 ~~Pt~~~~~-~g~~~~~~~-g~~~~~~l~~~i~~~~ 160 (405)
+-|++.+++ +|+.+.+.. ..++.+.+.+++.+..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 459999998 887666655 5679999999987653
No 400
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=49.40 E-value=23 Score=29.48 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=27.1
Q ss_pred HhHHHhCCCcccceEEEEeCCeeeeeecCCCCHHHHHHHH
Q 015527 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (405)
Q Consensus 117 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (405)
...+.+.||.++|++++ +|+ ....|..+.+.+.+-|
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~g~--~~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF--NGK--YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE--CCe--EeecCCCCHHHHHHHh
Confidence 45567889999999877 553 3467888888887654
No 401
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=47.82 E-value=59 Score=22.22 Aligned_cols=56 Identities=13% Similarity=0.042 Sum_probs=33.6
Q ss_pred EEEEecCCC-cHHHHHHHHHHHHHhcCcEEEEEEEcCCcc--hhhhhhhhcCCCCCCCcEEEE
Q 015527 287 LWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEG--VGRRVSQEFGVSGNAPRVIAY 346 (405)
Q Consensus 287 ~i~f~~~~~-~~~~~~~~~~va~~~~~~~~f~~id~~~~~--~~~~~~~~~gi~~~~~p~i~i 346 (405)
+++..+++. |....+.+.++. ...++.+..+|.+... ....+.+..|.. ..|.+++
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~--~vP~v~i 60 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQR--TVPNIFI 60 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCC--CCCeEEE
Confidence 345566666 888887787766 3344777777765331 112344555654 3788765
No 402
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=46.85 E-value=31 Score=25.72 Aligned_cols=57 Identities=16% Similarity=0.231 Sum_probs=36.9
Q ss_pred EecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCc--ccceEEEE-eCCe
Q 015527 80 FYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL--AYPTLYLF-VAGV 138 (405)
Q Consensus 80 f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~--~~Pt~~~~-~~g~ 138 (405)
||-.+|+.|......+.+... .+.+.|+.+.-....++.+.+++. ...+.+++ .+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 788999999999887777621 235777766444445556677764 34545554 4774
No 403
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=46.22 E-value=1.4e+02 Score=23.14 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=39.5
Q ss_pred cEEEEEecCCC--cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCC
Q 015527 285 KQLWLFAPAYG--SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVS 337 (405)
Q Consensus 285 ~~~i~f~~~~~--~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~ 337 (405)
.+++-|-...+ |.+.-+.+.++|.+.++-..++.+|.++-+ .+.++|.+.
T Consensus 22 vvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vp---dfn~~yel~ 73 (133)
T PF02966_consen 22 VVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVP---DFNQMYELY 73 (133)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTH---CCHHHTTS-
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccch---hhhcccccC
Confidence 45566776555 888888999999999998889999999744 788999997
No 404
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=44.90 E-value=2.2e+02 Score=25.10 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=42.9
Q ss_pred CCcEEcChhhHHHHHcCCCcEEEEEecCCC-hh-HhhhHHHHHHHHHHc----cCCcEEEEEeCcccHhHHHh----CCC
Q 015527 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWC-YW-SKKLAPEFAAAAKML----KGEADLVMVDAYLEKDLAKE----YNI 125 (405)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~~C-~~-C~~~~~~~~~~~~~~----~~~v~~~~v~~~~~~~~~~~----~~i 125 (405)
.....|++.+-+-+-.=++++-|.+|.+-- +. -....+.+.++-++| ++++.+-.||-+.+++.+++ +||
T Consensus 7 ~k~ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi 86 (271)
T PF09822_consen 7 NKRYSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGI 86 (271)
T ss_pred CCCccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCC
Confidence 455667776666444445677776665541 11 233333333333333 33799999998777776665 888
Q ss_pred ccc
Q 015527 126 LAY 128 (405)
Q Consensus 126 ~~~ 128 (405)
...
T Consensus 87 ~~~ 89 (271)
T PF09822_consen 87 QPV 89 (271)
T ss_pred Ccc
Confidence 763
No 405
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=44.81 E-value=99 Score=27.55 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=54.6
Q ss_pred CcccHhHHHhCCCcccceEEEEeCCeeeeeecC-CCCHHHHHHHHHhhhcCCccccCChhHHHHHhc----cC-CeEEEE
Q 015527 113 AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFG-ERTRDVISAWVREKMTLGTYSITTTDEAERILT----VE-SKLVLG 186 (405)
Q Consensus 113 ~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~l~----~~-~~~~v~ 186 (405)
|+-.+++.++++|.-+|-.+.+++. .-.+| ..+.+++.+.+.+.-..+-+.-.+..++.++.+ .. +.+++.
T Consensus 10 ~dl~~~~~~~~~i~vvPl~i~~~~~---~y~D~~~i~~~efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ii~i 86 (280)
T PF02645_consen 10 SDLPPELAEEYGIYVVPLNIIIDGK---EYRDGVDISPEEFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDEIIVI 86 (280)
T ss_dssp G---HHHHHHTTEEEE--EEEETTE---EEETTTTSCHHHHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCCCHHHHHhCCeEEEeEEEecCCe---EEecCCCCCHHHHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCeEEEE
Confidence 3444688899999999999888762 12234 789999999986554333334445555554443 34 334444
Q ss_pred EEcCCCCccHHHHHHHhccCCcceEEEecC
Q 015527 187 FLHDLEGMESEELAAASKLHSDVNFYQTTS 216 (405)
Q Consensus 187 f~~~~~~~~~~~~~~~a~~~~~~~f~~~~~ 216 (405)
-..+.-+..++....+++...+.++..+++
T Consensus 87 ~iSs~LSgty~~a~~aa~~~~~~~i~ViDS 116 (280)
T PF02645_consen 87 TISSGLSGTYNSARLAAKMLPDIKIHVIDS 116 (280)
T ss_dssp ES-TTT-THHHHHHHHHHHHTTTEEEEEE-
T ss_pred eCCcchhhHHHHHHHHHhhcCcCEEEEEeC
Confidence 444545556666666664434455555443
No 406
>PHA02291 hypothetical protein
Probab=44.68 E-value=26 Score=25.48 Aligned_cols=23 Identities=13% Similarity=0.478 Sum_probs=15.6
Q ss_pred CcchhhHHHHHHHHHHHHHHHhc
Q 015527 1 MEKTKTLLLLLTSSIILFKLYLF 23 (405)
Q Consensus 1 M~~~~~~~~~~~~~~ll~~~~~~ 23 (405)
|.++.|++.+++.++|++.+++.
T Consensus 1 MS~K~~iFYiL~~~VL~~si~sY 23 (132)
T PHA02291 1 MSRKASIFYILVVIVLAFSISSY 23 (132)
T ss_pred CCcchhhHHHHHHHHHHHHHHHH
Confidence 77777777777777766655543
No 407
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=44.65 E-value=45 Score=27.89 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=33.2
Q ss_pred ccHhHHHhCCCcccceEEEEeCCeeeeeecCCCCHHHHHHHHHh
Q 015527 115 LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158 (405)
Q Consensus 115 ~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 158 (405)
-+|.+.++|+|..+|++++...+ ......|..+...-.+.+.+
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~~-~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCSQ-GYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcCC-CCCEEEecccHHHHHHHHHh
Confidence 47889999999999999997643 44567788887776666654
No 408
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=43.54 E-value=32 Score=28.34 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=25.1
Q ss_pred hHHHhCCCcccceEEEEeCCeeeeeecCCCCHHHHHHHH
Q 015527 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (405)
Q Consensus 118 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (405)
..+.++||.++|++++ +|+ .+.|....+.+...+
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 4567889999999987 663 556877777766654
No 409
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=43.29 E-value=74 Score=25.48 Aligned_cols=65 Identities=12% Similarity=0.190 Sum_probs=41.3
Q ss_pred HHHHHHhcCcEEE--EEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeC-CCccccCCCCCCHHHHHHHHHHHhc
Q 015527 304 EEVAKALKGKLLH--VYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYVLNGELTLSSIKSFGEEFLE 374 (405)
Q Consensus 304 ~~va~~~~~~~~f--~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~-~~~~y~~~~~~~~~~l~~Fi~~~~~ 374 (405)
+.-+++-+.++.. +.+|.+. -+.+.+++.+.. .+|++.+. +...|.-+|.++++++.+++.=+.+
T Consensus 92 rss~e~~kk~~p~s~~vlD~~G-----~~~~aW~L~~~~-SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~Ll~~ 159 (160)
T PF09695_consen 92 RSSAEDSKKEFPWSQFVLDSNG-----VVRKAWQLQEES-SAIIVLDKQGKVQFVKEGALSPAEVQQVIALLKK 159 (160)
T ss_pred HHHHHHhhhhCCCcEEEEcCCC-----ceeccccCCCCC-ceEEEEcCCccEEEEECCCCCHHHHHHHHHHHhc
Confidence 3444444443333 3455553 345778887643 45667776 5556777999999999999875543
No 410
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=42.89 E-value=31 Score=25.90 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=21.7
Q ss_pred EEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcc
Q 015527 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~ 115 (405)
+..|..+.|..|++....+++- ++.|-.+|..+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~------gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA------GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEeehhc
Confidence 3467889999999877555432 45566666543
No 411
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=42.27 E-value=1.3e+02 Score=25.33 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=44.2
Q ss_pred CChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeeeeeecCCCCHHHHHHHHHhhhcCC
Q 015527 84 WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLG 163 (405)
Q Consensus 84 ~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~ 163 (405)
.|+.|+.+.-.+. .+-. .+.+-.||....++-.++.--.+=|=++.|+. .+..+.+.|+++|.+.++++
T Consensus 20 dcpf~qr~~m~L~---~k~~-~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~-------~~~tDs~~Ie~~Lee~l~~p 88 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV-PFKVTTVDLSRKPEWFLDISPGGKPPVLKFDE-------KWVTDSDKIEEFLEEKLPPP 88 (221)
T ss_pred CChhHHHHHHHHH---HcCC-CceEEEeecCCCcHHHHhhCCCCCCCeEEeCC-------ceeccHHHHHHHHHHhcCCC
Confidence 4888888765554 2211 57788889888877666544333333333332 23457889999999998655
Q ss_pred c
Q 015527 164 T 164 (405)
Q Consensus 164 ~ 164 (405)
-
T Consensus 89 ~ 89 (221)
T KOG1422|consen 89 K 89 (221)
T ss_pred C
Confidence 3
No 412
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.85 E-value=47 Score=27.34 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=35.3
Q ss_pred HHHHHcCCCcEEEEEecCCChhHhhhHHHHHHHHHHccC-CcEEEEEe
Q 015527 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVD 112 (405)
Q Consensus 66 ~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~ 112 (405)
++++..++..++.-.-.+.|.-|++....+..+...++. ++..+.|-
T Consensus 44 ~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg 91 (197)
T KOG4498|consen 44 VTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG 91 (197)
T ss_pred hHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 345666777777777889999999999999998555544 56666664
No 413
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=41.48 E-value=1.9e+02 Score=23.37 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=23.4
Q ss_pred ccEEEEEe--cCCC-cHHHHHHHHHHHHHhcC-cEEEEEEEcC
Q 015527 284 RKQLWLFA--PAYG-SDKVILTFEEVAKALKG-KLLHVYVEMN 322 (405)
Q Consensus 284 ~~~~i~f~--~~~~-~~~~~~~~~~va~~~~~-~~~f~~id~~ 322 (405)
++.++.|. .++. |......+.+++.++.. ++.++.+..+
T Consensus 30 k~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d 72 (173)
T cd03015 30 KWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD 72 (173)
T ss_pred CEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 45556554 3443 77777788888777753 3545545433
No 414
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.23 E-value=2e+02 Score=24.60 Aligned_cols=71 Identities=13% Similarity=0.214 Sum_probs=44.3
Q ss_pred cccCChhHHHHHhccCCeEEEEEEcCCCCc---cHHHHHHHhccCCcceEEEec---CHHHHhhcCCCCCCCCCeEEEee
Q 015527 165 YSITTTDEAERILTVESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQTT---SADVAEFFHIHPKSKRPALIFLH 238 (405)
Q Consensus 165 ~~i~~~~~~~~~l~~~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~~---~~~l~~~~~~~~~~~~p~i~~~~ 238 (405)
..+...+++ +.+.....++.|...|..+ ....+..+++.-.++.|..+. ..+++..+.+.. .|..+.+.
T Consensus 4 ~~i~~~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~---vp~~~~~~ 78 (227)
T KOG0911|consen 4 QFIVFQEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEA---VPYFVFFF 78 (227)
T ss_pred eeehhHHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhc---Cceeeeee
Confidence 344455555 4455666677777777766 444455666555777777663 445667777764 68887775
Q ss_pred cC
Q 015527 239 LE 240 (405)
Q Consensus 239 ~~ 240 (405)
.+
T Consensus 79 ~~ 80 (227)
T KOG0911|consen 79 LG 80 (227)
T ss_pred cc
Confidence 43
No 415
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=40.61 E-value=35 Score=24.02 Aligned_cols=8 Identities=50% Similarity=0.758 Sum_probs=4.5
Q ss_pred CcchhhHH
Q 015527 1 MEKTKTLL 8 (405)
Q Consensus 1 M~~~~~~~ 8 (405)
|++.++++
T Consensus 1 MKK~kii~ 8 (85)
T PF11337_consen 1 MKKKKIIL 8 (85)
T ss_pred CCchHHHH
Confidence 87755433
No 416
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=40.41 E-value=18 Score=30.89 Aligned_cols=93 Identities=12% Similarity=0.168 Sum_probs=60.4
Q ss_pred ChhHHHHHhccCCeEEEEEEcCCCCc---cHHHHHHHhcc--CCcceEE---EecCHHHHhhcCCCCCCCCCeEEEeecC
Q 015527 169 TTDEAERILTVESKLVLGFLHDLEGM---ESEELAAASKL--HSDVNFY---QTTSADVAEFFHIHPKSKRPALIFLHLE 240 (405)
Q Consensus 169 ~~~~~~~~l~~~~~~~v~f~~~~~~~---~~~~~~~~a~~--~~~~~f~---~~~~~~l~~~~~~~~~~~~p~i~~~~~~ 240 (405)
+++....++ ...+++.|+.+||-. ..+.+...|.- .-.+..+ .+++..+.-+|-++. .|+|+-.+
T Consensus 30 ~eenw~~~l--~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vta---LptIYHvk-- 102 (248)
T KOG0913|consen 30 DEENWKELL--TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTA---LPTIYHVK-- 102 (248)
T ss_pred cccchhhhh--chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEe---cceEEEee--
Confidence 334444443 234667788888755 44455555522 2233333 467888888998885 78876555
Q ss_pred CCccccccCCCCHHHHHHHHhccCCCCc
Q 015527 241 AGKATPFRHQFTRLAIANFVTHTKHPLV 268 (405)
Q Consensus 241 ~~~~~~y~g~~~~~~l~~fi~~~~~p~v 268 (405)
++..-.|.|.++..++.+|+.......+
T Consensus 103 DGeFrrysgaRdk~dfisf~~~r~w~~i 130 (248)
T KOG0913|consen 103 DGEFRRYSGARDKNDFISFEEHREWQSI 130 (248)
T ss_pred ccccccccCcccchhHHHHHHhhhhhcc
Confidence 4578899999999999999987554443
No 417
>PTZ00256 glutathione peroxidase; Provisional
Probab=39.01 E-value=2.2e+02 Score=23.37 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=24.4
Q ss_pred EecCCC-cHHHHHHHHHHHHHhcCc-EEEEEEEc
Q 015527 290 FAPAYG-SDKVILTFEEVAKALKGK-LLHVYVEM 321 (405)
Q Consensus 290 f~~~~~-~~~~~~~~~~va~~~~~~-~~f~~id~ 321 (405)
++.||. |....+.++++.++|+++ +.++-+++
T Consensus 49 ~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~ 82 (183)
T PTZ00256 49 VACKCGLTSDHYTQLVELYKQYKSQGLEILAFPC 82 (183)
T ss_pred ECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEec
Confidence 556666 888888999999999764 77766654
No 418
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=37.06 E-value=81 Score=25.49 Aligned_cols=94 Identities=13% Similarity=0.137 Sum_probs=49.3
Q ss_pred HHHHHHhccCCCCccccc--cccccccccCCccEEE-EEecCCC-cHHHHH-HHH--HHHHHhcCcEEEEEEEcCCcchh
Q 015527 255 AIANFVTHTKHPLVVTLT--IHNAQFVFQDPRKQLW-LFAPAYG-SDKVIL-TFE--EVAKALKGKLLHVYVEMNSEGVG 327 (405)
Q Consensus 255 ~l~~fi~~~~~p~v~~l~--~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~-~~~--~va~~~~~~~~f~~id~~~~~~~ 327 (405)
+-.-++.++....|.-.. .+.+..--..++|+++ +..++|. |..+.. .|. ++|.-++.++.=+.+|.++.+
T Consensus 7 ~~Spyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~P-- 84 (163)
T PF03190_consen 7 SKSPYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERP-- 84 (163)
T ss_dssp ---HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-H--
T ss_pred CCCHHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCc--
Confidence 345567777766664444 3445554455556555 4555665 554443 344 788888888888999988754
Q ss_pred hhhhhhc--------CCCCCCCcEEEEEeCCCcc
Q 015527 328 RRVSQEF--------GVSGNAPRVIAYSARDAKK 353 (405)
Q Consensus 328 ~~~~~~~--------gi~~~~~p~i~i~~~~~~~ 353 (405)
.+-..| |. ...|..++..+.++.
T Consensus 85 -did~~y~~~~~~~~~~--gGwPl~vfltPdg~p 115 (163)
T PF03190_consen 85 -DIDKIYMNAVQAMSGS--GGWPLTVFLTPDGKP 115 (163)
T ss_dssp -HHHHHHHHHHHHHHS-----SSEEEEE-TTS-E
T ss_pred -cHHHHHHHHHHHhcCC--CCCCceEEECCCCCe
Confidence 554444 33 247888888885543
No 419
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=36.89 E-value=46 Score=30.50 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=43.8
Q ss_pred ChhHhhhHHHH----HHHHHHccC---CcEEEEEeCc-ccH--hHHHhCCCcc-cceEEEEeCCeeeeeecCCCCHHHHH
Q 015527 85 CYWSKKLAPEF----AAAAKMLKG---EADLVMVDAY-LEK--DLAKEYNILA-YPTLYLFVAGVRQFQFFGERTRDVIS 153 (405)
Q Consensus 85 C~~C~~~~~~~----~~~~~~~~~---~v~~~~v~~~-~~~--~~~~~~~i~~-~Pt~~~~~~g~~~~~~~g~~~~~~l~ 153 (405)
||.|..-.-.. .++.+.+.+ .++++..-|. ..+ .-..++||.+ -+...+|.+|+.+.+..+..-.+.+.
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~ 350 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELE 350 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHH
Confidence 55554443333 344444544 5788888884 332 2335677765 45566677998888887665555555
Q ss_pred HHHHhh
Q 015527 154 AWVREK 159 (405)
Q Consensus 154 ~~i~~~ 159 (405)
+.|.+.
T Consensus 351 ~~i~~~ 356 (360)
T PRK00366 351 AEIEAY 356 (360)
T ss_pred HHHHHH
Confidence 555443
No 420
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=35.88 E-value=41 Score=22.37 Aligned_cols=33 Identities=9% Similarity=0.120 Sum_probs=28.0
Q ss_pred EeCCCccccCCCCCCHHHHHHHHHHHhcCce-ee
Q 015527 347 SARDAKKYVLNGELTLSSIKSFGEEFLEDKL-LN 379 (405)
Q Consensus 347 ~~~~~~~y~~~~~~~~~~l~~Fi~~~~~Gkl-~~ 379 (405)
++.+++.|.+.+..+++++.+-|+.+=+|-| |.
T Consensus 39 F~~~rkPWI~Pd~~~ve~i~~vi~sCPSGAl~Y~ 72 (74)
T COG3592 39 FNLGRKPWIMPDAVDVEEIVKVIDTCPSGALKYR 72 (74)
T ss_pred cccCCCCccCCCCCCHHHHHHHHHhCCchhhhee
Confidence 4446778999999999999999999999988 54
No 421
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=34.33 E-value=1.8e+02 Score=20.98 Aligned_cols=71 Identities=11% Similarity=0.135 Sum_probs=41.1
Q ss_pred CCeEEEEEEcC--CCCccHHHHHHHhccCCcceEEEecCHHHHhhcCCCCCCCCCeEEEeecCCCccccccCCCCHHHHH
Q 015527 180 ESKLVLGFLHD--LEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIA 257 (405)
Q Consensus 180 ~~~~~v~f~~~--~~~~~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~~~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~ 257 (405)
+++.++.|..+ .|....+...++|.+.+++.+-...... ..|++.+.+.+....+.|.|--.-.++.
T Consensus 19 ~pV~l~~f~~~~~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~GhEf~ 87 (94)
T cd02974 19 NPVELVASLDDSEKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGHEFT 87 (94)
T ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCchhHH
Confidence 34444455543 2333445556777888887764322111 2599998876544557887765556666
Q ss_pred HHHh
Q 015527 258 NFVT 261 (405)
Q Consensus 258 ~fi~ 261 (405)
.||.
T Consensus 88 Slil 91 (94)
T cd02974 88 SLVL 91 (94)
T ss_pred HHHH
Confidence 6653
No 422
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.08 E-value=1.9e+02 Score=21.21 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=38.1
Q ss_pred hHHHHHcCCCcEEEEEe---cCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCC-cccceEE-EEeCC
Q 015527 65 NFSEFMGKNRNVMVMFY---ANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNI-LAYPTLY-LFVAG 137 (405)
Q Consensus 65 ~~~~~~~~~~~~~v~f~---a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i-~~~Pt~~-~~~~g 137 (405)
-+++.++++++++-+=- .|-|+.+.+....+.. .+ -+.|+.||+-.++++.+...- ..+||+= +|-+|
T Consensus 7 ~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~----~g-~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~G 79 (105)
T COG0278 7 RIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSA----CG-VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNG 79 (105)
T ss_pred HHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHH----cC-CcceeEEeeccCHHHHhccHhhcCCCCCceeeECC
Confidence 34556655544333322 3667777665544433 22 178999999999998876532 2344432 23366
No 423
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=33.48 E-value=2.2e+02 Score=21.85 Aligned_cols=60 Identities=8% Similarity=0.138 Sum_probs=43.7
Q ss_pred cEEEEEecCCC--cHHHHHHHHHHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEE-EEEeC
Q 015527 285 KQLWLFAPAYG--SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVI-AYSAR 349 (405)
Q Consensus 285 ~~~i~f~~~~~--~~~~~~~~~~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i-~i~~~ 349 (405)
.+++-|-...| |-+.-..|..+|.+.++-..+..+|.++- +.+.+.|+++. +|.+ .+++.
T Consensus 25 lvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV---~~~~~~~~l~~--p~tvmfFfn~ 87 (142)
T KOG3414|consen 25 LVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEV---PDFVKMYELYD--PPTVMFFFNN 87 (142)
T ss_pred EEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchh---hhhhhhhcccC--CceEEEEEcC
Confidence 44555665544 77888899999999999777888888864 48889999975 4554 44543
No 424
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=33.39 E-value=56 Score=24.74 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=16.5
Q ss_pred EEEEecCCChhHhhhHHHHHH
Q 015527 77 MVMFYANWCYWSKKLAPEFAA 97 (405)
Q Consensus 77 ~v~f~a~~C~~C~~~~~~~~~ 97 (405)
+-.|+.|.|..|++....+++
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456788999999998766654
No 425
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=33.32 E-value=2.8e+02 Score=22.97 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCcEEE--EEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeC-CCccccCCCCCCHHHHHHHHH
Q 015527 301 LTFEEVAKALKGKLLH--VYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYVLNGELTLSSIKSFGE 370 (405)
Q Consensus 301 ~~~~~va~~~~~~~~f--~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~-~~~~y~~~~~~~~~~l~~Fi~ 370 (405)
..++..+++.+..+.+ +.+|... .....||+.. .|+.+++.+. +...+...|.++.+++.+++.
T Consensus 111 ~fVk~fie~~~~~~P~~~vllD~~g-----~v~~~~gv~~-~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~ 177 (184)
T TIGR01626 111 MFVKSSAKKGKKENPWSQVVLDDKG-----AVKNAWQLNS-EDSAIIVLDKTGKVKFVKEGALSDSDIQTVIS 177 (184)
T ss_pred HHHHHHHHHhcccCCcceEEECCcc-----hHHHhcCCCC-CCceEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 3455555555544332 4445432 4567888864 3666567776 455677889999998887443
No 426
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=32.91 E-value=1.6e+02 Score=26.95 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=42.5
Q ss_pred EEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeC-CCccccCC-CCCCHHHH----HHHHHHHhcCce--eeecccCchh
Q 015527 317 VYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYVLN-GELTLSSI----KSFGEEFLEDKL--LNQSDQISET 387 (405)
Q Consensus 317 ~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~-~~~~y~~~-~~~~~~~l----~~Fi~~~~~Gkl--~~kse~iPe~ 387 (405)
++.|..+ +.++...|.+.. +|.+.++++ .|.+.++- +.+.++.+ .+||+..--+++ ..++.+.|+.
T Consensus 136 V~~Dtse---g~~~~~Fy~~~~--~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~~~~d~vas~t~n~~~p~~ 209 (356)
T KOG1364|consen 136 VLDDTSE---GQPFSAFYHISS--LPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDSCPHDEVASLTRNRKRPKT 209 (356)
T ss_pred EeeccCC---CCchhhheeccC--CceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhcCCccccccccccccCCCC
Confidence 3444444 558888898875 889999998 66666553 55666554 455555545566 5666666654
No 427
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=32.34 E-value=2.1e+02 Score=21.16 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=33.9
Q ss_pred CccEEEEEecC--CC-cHHHHHHHHHHHHHhcC-cEEEEEEEcCCcchhhhhhhhcC
Q 015527 283 PRKQLWLFAPA--YG-SDKVILTFEEVAKALKG-KLLHVYVEMNSEGVGRRVSQEFG 335 (405)
Q Consensus 283 ~~~~~i~f~~~--~~-~~~~~~~~~~va~~~~~-~~~f~~id~~~~~~~~~~~~~~g 335 (405)
+++.++.|... |. |......+.++..+++. ++.++.+..+...=..++.+..+
T Consensus 25 gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~ 81 (124)
T PF00578_consen 25 GKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG 81 (124)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT
T ss_pred CCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhc
Confidence 34666666554 44 88888889999988875 48888777665421233444444
No 428
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=31.42 E-value=2.6e+02 Score=21.97 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=25.6
Q ss_pred EEEEecCCC-cHHHHHHHHHHHHHhcC-cEEEEEEEc
Q 015527 287 LWLFAPAYG-SDKVILTFEEVAKALKG-KLLHVYVEM 321 (405)
Q Consensus 287 ~i~f~~~~~-~~~~~~~~~~va~~~~~-~~~f~~id~ 321 (405)
+.+++++|. |....+.+.++.+++++ .+.+.-+++
T Consensus 27 v~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 27 VVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred EEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 345556776 77888889999999975 477776664
No 429
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=30.57 E-value=2.5e+02 Score=21.51 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=32.4
Q ss_pred CcEEEEEeCcccHhH----------HHhCCCcccceEEEEeCCeeeeeecCCCCHHHHHHHHHhhh
Q 015527 105 EADLVMVDAYLEKDL----------AKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160 (405)
Q Consensus 105 ~v~~~~v~~~~~~~~----------~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (405)
++.+.+-|..+++.. .++-|....|-++ -+| .+.......+.++|.+|+.-..
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitl--VdG-eiv~~G~YPt~eEl~~~~~i~~ 102 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITL--VDG-EIVKTGRYPTNEELAEWLGISF 102 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEE--ETT-EEEEESS---HHHHHHHHT--G
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEE--ECC-EEEEecCCCCHHHHHHHhCCCc
Confidence 799999999887643 3445888999864 477 5555555678999999986544
No 430
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=30.40 E-value=38 Score=30.71 Aligned_cols=42 Identities=10% Similarity=0.069 Sum_probs=27.8
Q ss_pred CcEEEEEeCcccH---hHHHhCCCcc--cceEEEEeCCeeeeeecCC
Q 015527 105 EADLVMVDAYLEK---DLAKEYNILA--YPTLYLFVAGVRQFQFFGE 146 (405)
Q Consensus 105 ~v~~~~v~~~~~~---~~~~~~~i~~--~Pt~~~~~~g~~~~~~~g~ 146 (405)
.++++.+-|.-|. .-..++||.+ .-...+|++|+.+.+..+.
T Consensus 289 ~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~~~ 335 (346)
T TIGR00612 289 PLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQPET 335 (346)
T ss_pred CCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecCHH
Confidence 6888888886652 1224567654 3567788999777666543
No 431
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=30.00 E-value=1.9e+02 Score=20.79 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=25.9
Q ss_pred CChhHhhhHHHHHHHHHHccC-CcEEEEEeCcccHhHHHhC--------CCcccceEE
Q 015527 84 WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEY--------NILAYPTLY 132 (405)
Q Consensus 84 ~C~~C~~~~~~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~--------~i~~~Pt~~ 132 (405)
.+.-.++....=+.+-..+.. +|.|-.+|++.+++..+.. +-...|.++
T Consensus 8 s~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIF 65 (92)
T cd03030 8 SSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIF 65 (92)
T ss_pred cccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEE
Confidence 333333333333333333333 6899999998776543321 235567764
No 432
>PRK13617 psbV cytochrome c-550; Provisional
Probab=29.41 E-value=34 Score=27.67 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=20.5
Q ss_pred CCCccCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHhh
Q 015527 50 WPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKK 90 (405)
Q Consensus 50 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~ 90 (405)
-+.+.....+.++.+++.. ++-+ | ...|..|+.
T Consensus 43 v~~~~~g~~~~~s~~~~~~----G~~~---F-~~~C~~CH~ 75 (170)
T PRK13617 43 VPADPSGSQVTFSESEIKA----GRKV---F-NTSCGTCHA 75 (170)
T ss_pred eecCCCCCeEEeCHHHHHH----HHHH---H-Hcchhhhcc
Confidence 3444556677777776653 2222 3 778999984
No 433
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=28.71 E-value=2.3e+02 Score=21.82 Aligned_cols=67 Identities=13% Similarity=0.051 Sum_probs=40.0
Q ss_pred ccEEEEEe--cCCC-cHHHHHHHHHHHHHhcC-cEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCcccc
Q 015527 284 RKQLWLFA--PAYG-SDKVILTFEEVAKALKG-KLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYV 355 (405)
Q Consensus 284 ~~~~i~f~--~~~~-~~~~~~~~~~va~~~~~-~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~~y~ 355 (405)
.+.+++|. .+|. |......+.++..++.. .+.++-+..++..-...+.+..++ +.-++.+.++..+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~-----~~p~~~D~~~~~~~ 94 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL-----PFPVYADPDRKLYR 94 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC-----CCeEEECCchhHHH
Confidence 34555554 5666 88999999999999864 477777766654311123333333 33356666555444
No 434
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=28.65 E-value=2.1e+02 Score=21.87 Aligned_cols=37 Identities=8% Similarity=0.191 Sum_probs=26.7
Q ss_pred EEEEEecCCC--cHHHHHHHHHHHHHhcC----cEEEEEEEcC
Q 015527 286 QLWLFAPAYG--SDKVILTFEEVAKALKG----KLLHVYVEMN 322 (405)
Q Consensus 286 ~~i~f~~~~~--~~~~~~~~~~va~~~~~----~~~f~~id~~ 322 (405)
++.++..+|. |......++++..+++. ++.++.+..+
T Consensus 26 vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 26 LVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred EEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 3444556665 88888999999998875 4777777654
No 435
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=28.65 E-value=77 Score=26.06 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=17.3
Q ss_pred hHHHhCCCcccceEEEEeCCe
Q 015527 118 DLAKEYNILAYPTLYLFVAGV 138 (405)
Q Consensus 118 ~~~~~~~i~~~Pt~~~~~~g~ 138 (405)
..+.++||.++||+++.+++.
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCCccCEEEEEeCCe
Confidence 456778999999999998664
No 436
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=28.04 E-value=60 Score=24.23 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=22.3
Q ss_pred EEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCccc
Q 015527 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (405)
Q Consensus 78 v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~ 116 (405)
..|+.+.|..|++....+++- ++.|-.+|..+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA------GIEPEIVEYLKT 34 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEecccC
Confidence 457889999999987555542 455666665443
No 437
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=27.81 E-value=3.6e+02 Score=22.45 Aligned_cols=61 Identities=8% Similarity=0.042 Sum_probs=32.6
Q ss_pred hhhhhcCCCCC----CCcEEEEEeCCCc-cccC-CCCCCHHHHHHHHHHHhcCce-eeecccCchhhh
Q 015527 329 RVSQEFGVSGN----APRVIAYSARDAK-KYVL-NGELTLSSIKSFGEEFLEDKL-LNQSDQISETIL 389 (405)
Q Consensus 329 ~~~~~~gi~~~----~~p~i~i~~~~~~-~y~~-~~~~~~~~l~~Fi~~~~~Gkl-~~kse~iPe~~~ 389 (405)
.+.+.||+-.. ..|..++++.+|+ .+.. .......++.+.++.+..++. ..++.--|-+|.
T Consensus 111 ~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~~~~~~~~~cp~~w~ 178 (199)
T PTZ00253 111 SIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQFVEKHGEVCPANWK 178 (199)
T ss_pred HHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhhhHHhcCCEeCCCCC
Confidence 56677787321 1367777777444 2222 221233456666666666655 334555565554
No 438
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=27.43 E-value=60 Score=31.51 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=56.3
Q ss_pred cChhhHHHHHcCCCcEEEEEecCCChhHhhhHHH-H--HHHHHHccCCcEEEEEeCcccHhHHH--------hCCCcccc
Q 015527 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPE-F--AAAAKMLKGEADLVMVDAYLEKDLAK--------EYNILAYP 129 (405)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~-~--~~~~~~~~~~v~~~~v~~~~~~~~~~--------~~~i~~~P 129 (405)
-..+.|++.-.++++.++-.--+.|..|.-+..+ | ++.++.+.+++.-+.||-++-|++-+ ..|-.+.|
T Consensus 100 wgqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWP 179 (786)
T KOG2244|consen 100 WGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWP 179 (786)
T ss_pred chHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCc
Confidence 3457788888999999999988889999877553 4 33666666677778888888887655 34667788
Q ss_pred eEEEEe
Q 015527 130 TLYLFV 135 (405)
Q Consensus 130 t~~~~~ 135 (405)
.-++..
T Consensus 180 msV~LT 185 (786)
T KOG2244|consen 180 MSVFLT 185 (786)
T ss_pred eeEEeC
Confidence 777765
No 439
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=27.06 E-value=1.5e+02 Score=19.31 Aligned_cols=52 Identities=15% Similarity=-0.021 Sum_probs=30.1
Q ss_pred EEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcc----cHhHHHhCCCcccceEEE
Q 015527 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYL 133 (405)
Q Consensus 78 v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~----~~~~~~~~~i~~~Pt~~~ 133 (405)
..|+.+.|+.|+..+-.+....- .+....++... .+++.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~----~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGI----PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC----CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 35778899999987655444322 34455555422 234444444567898853
No 440
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=26.97 E-value=2e+02 Score=19.24 Aligned_cols=54 Identities=17% Similarity=0.045 Sum_probs=32.3
Q ss_pred EEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcc----cHhHHHhCCCcccceEEEEeCC
Q 015527 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYLFVAG 137 (405)
Q Consensus 78 v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~----~~~~~~~~~i~~~Pt~~~~~~g 137 (405)
..++.+.|+.|++.+-.+.+. +-.+.+..++... .+++.+--.-..+|++. .+|
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~----gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g 59 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEK----GLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGD 59 (73)
T ss_pred EEecCCCCccHHHHHHHHHHc----CCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECC
Confidence 467788899998776333332 2245566666532 23455555556789884 466
No 441
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=25.15 E-value=1.8e+02 Score=22.54 Aligned_cols=40 Identities=8% Similarity=0.107 Sum_probs=26.2
Q ss_pred ccEEEEEe--cCCC-cHHHHHHHHHHHHHhcC-cEEEEEEEcCC
Q 015527 284 RKQLWLFA--PAYG-SDKVILTFEEVAKALKG-KLLHVYVEMNS 323 (405)
Q Consensus 284 ~~~~i~f~--~~~~-~~~~~~~~~~va~~~~~-~~~f~~id~~~ 323 (405)
++.+++|. .+|. |......++++++++.+ .+.++-+..+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 72 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS 72 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 34445443 4555 88888888888888864 46666665544
No 442
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.05 E-value=2.1e+02 Score=23.73 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=8.6
Q ss_pred CcchhhHHHHHHHHHHHHH
Q 015527 1 MEKTKTLLLLLTSSIILFK 19 (405)
Q Consensus 1 M~~~~~~~~~~~~~~ll~~ 19 (405)
|..+|.+++++++++++++
T Consensus 2 ~~~Rw~~~ILll~a~~~~~ 20 (188)
T COG3117 2 MSRRWVYLILLLAALALSG 20 (188)
T ss_pred cchhHHHHHHHHHHHHHHH
Confidence 4455554444444444333
No 443
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=24.75 E-value=74 Score=23.83 Aligned_cols=33 Identities=9% Similarity=0.100 Sum_probs=22.6
Q ss_pred EEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCccc
Q 015527 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (405)
Q Consensus 78 v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~ 116 (405)
..|+.+.|..|++....+++- ++.+-.+|..+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccCC
Confidence 457889999999987666652 355556665443
No 444
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=23.92 E-value=3.6e+02 Score=21.12 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=44.4
Q ss_pred CCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCccc-ceEEEEe-CC
Q 015527 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAY-PTLYLFV-AG 137 (405)
Q Consensus 73 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~-Pt~~~~~-~g 137 (405)
+++-.|.+|-.-|+-|-.+...+.+. .-++.+.|+.+..+....+....++..- +..+++. +|
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~--D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g 70 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRR--DQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAG 70 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHh--ccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCC
Confidence 46777888999999999966555543 2233799999988877777777777543 4444554 66
No 445
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=23.67 E-value=3.6e+02 Score=25.56 Aligned_cols=88 Identities=11% Similarity=0.124 Sum_probs=58.7
Q ss_pred cEEEEEecCCC-cHHHHH--HHH--HHHHHhcCcEEEEEEEcCCcchhhhhhhhcCCCCCCCcEEEEEeCCCcccc-CCC
Q 015527 285 KQLWLFAPAYG-SDKVIL--TFE--EVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYV-LNG 358 (405)
Q Consensus 285 ~~~i~f~~~~~-~~~~~~--~~~--~va~~~~~~~~f~~id~~~~~~~~~~~~~~gi~~~~~p~i~i~~~~~~~y~-~~~ 358 (405)
-++++|...++ ....+. .|. .+++.....+.-+.+++.... ...+...|.+.. .|+++++...|+... ..|
T Consensus 20 alfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~a-a~qFs~IYp~v~--vPs~ffIg~sGtpLevitg 96 (506)
T KOG2507|consen 20 ALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVA-ATQFSAIYPYVS--VPSIFFIGFSGTPLEVITG 96 (506)
T ss_pred eEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchh-hhhhhhhccccc--ccceeeecCCCceeEEeec
Confidence 56777877665 122222 222 344555566778888877765 336777777654 788888888777755 577
Q ss_pred CCCHHHHHHHHHHHhcC
Q 015527 359 ELTLSSIKSFGEEFLED 375 (405)
Q Consensus 359 ~~~~~~l~~Fi~~~~~G 375 (405)
-.+.++|..=|+.++-|
T Consensus 97 ~v~adeL~~~i~Kv~~~ 113 (506)
T KOG2507|consen 97 FVTADELASSIEKVWLG 113 (506)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 77888888888887776
No 446
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=23.61 E-value=29 Score=26.73 Aligned_cols=70 Identities=16% Similarity=0.283 Sum_probs=38.1
Q ss_pred CChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCc----ccceEEEEeCCeeeeeecCCCCHHHHHHHHHhh
Q 015527 84 WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL----AYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (405)
Q Consensus 84 ~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~----~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (405)
-|+||++..|.+.-. +.| +|.+.|.- ..=.++....|+......| +|-.++
T Consensus 11 ~CPhCRQ~ipALtLT-DtY----------------LC~rHGaFEAdP~t~eLVHLqSgR~Wr~W~g--------~WYRQH 65 (163)
T TIGR02652 11 RCPHCRQNIPALTLT-DTY----------------LCNRHGAFEADPETGELVHLQSGRRWRLWEG--------QWYRQH 65 (163)
T ss_pred cCchhhcccchheec-cee----------------eccCCCccccCCCCCceEEeecCceeeeccc--------hhhhhc
Confidence 699999998876422 111 23333321 1224555556755555665 467777
Q ss_pred hcCCccccCChhHHHHHhc
Q 015527 160 MTLGTYSITTTDEAERILT 178 (405)
Q Consensus 160 ~~~~~~~i~~~~~~~~~l~ 178 (405)
..|.=..+.--+.++.+-.
T Consensus 66 thpDGiRfEIheaLDrLyt 84 (163)
T TIGR02652 66 THPDGIRFEIHEALDRLFT 84 (163)
T ss_pred cCCCceeEeHHHHHHHHHh
Confidence 7655444433455555543
No 447
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=23.54 E-value=28 Score=26.73 Aligned_cols=70 Identities=14% Similarity=0.250 Sum_probs=37.6
Q ss_pred CChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCc----ccceEEEEeCCeeeeeecCCCCHHHHHHHHHhh
Q 015527 84 WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL----AYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (405)
Q Consensus 84 ~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~----~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (405)
.|+||++..|.+.-. +.| +|.+.|.- ..=.++....|+......| +|-.++
T Consensus 8 ~CPhCRq~ipALtLT-DtY----------------LC~rHGaFEAdp~t~eLVHLqSgR~Wr~W~~--------~WyrQH 62 (161)
T PF09654_consen 8 QCPHCRQTIPALTLT-DTY----------------LCPRHGAFEADPKTGELVHLQSGRHWRLWEG--------EWYRQH 62 (161)
T ss_pred cCchhhcccchheec-cee----------------eccCccccccCCCCCceEEeecCceeeeccc--------hhhhhc
Confidence 599999998876422 111 23333221 1224455556655555555 467777
Q ss_pred hcCCccccCChhHHHHHhc
Q 015527 160 MTLGTYSITTTDEAERILT 178 (405)
Q Consensus 160 ~~~~~~~i~~~~~~~~~l~ 178 (405)
..|.=..+.--+.++.+-.
T Consensus 63 thpDGiRfEIheaLDrLyt 81 (161)
T PF09654_consen 63 THPDGIRFEIHEALDRLYT 81 (161)
T ss_pred cCCCceeEeHHHHHHHHHh
Confidence 7655444433455555543
No 448
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=23.03 E-value=84 Score=21.77 Aligned_cols=14 Identities=29% Similarity=0.359 Sum_probs=8.5
Q ss_pred CcchhhHHHHHHHH
Q 015527 1 MEKTKTLLLLLTSS 14 (405)
Q Consensus 1 M~~~~~~~~~~~~~ 14 (405)
|+++.|++.++.+.
T Consensus 1 MaRRlwiLslLAVt 14 (100)
T PF05984_consen 1 MARRLWILSLLAVT 14 (100)
T ss_pred CchhhHHHHHHHHH
Confidence 77776666554443
No 449
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=22.11 E-value=3e+02 Score=19.66 Aligned_cols=61 Identities=8% Similarity=0.121 Sum_probs=31.8
Q ss_pred HHHHHhcCc-EEEEEEEcCCcchh---hhhhhhcCCCCCCCcEEEEEeCCCccccCCCCCCHHHHHHHH
Q 015527 305 EVAKALKGK-LLHVYVEMNSEGVG---RRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFG 369 (405)
Q Consensus 305 ~va~~~~~~-~~f~~id~~~~~~~---~~~~~~~gi~~~~~p~i~i~~~~~~~y~~~~~~~~~~l~~Fi 369 (405)
.+.|||.+. +.|.++|.....-+ +++.+..--+.-..|++++-+. +.=+|......|-+++
T Consensus 28 al~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~e----iV~EGnp~LK~I~~~~ 92 (93)
T PF07315_consen 28 ALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDE----IVAEGNPQLKDIYEEM 92 (93)
T ss_dssp HHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTE----EEEESS--HHHHHHHH
T ss_pred HHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCE----EEecCCccHHHHHHhh
Confidence 456889876 99999999876411 1344444333444688877432 2224444555555554
No 450
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=21.99 E-value=3e+02 Score=22.16 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=28.4
Q ss_pred cHhHHHhCCCccc-ceEEEEe-CCeeeeeecCCCCHHHHHHHHH
Q 015527 116 EKDLAKEYNILAY-PTLYLFV-AGVRQFQFFGERTRDVISAWVR 157 (405)
Q Consensus 116 ~~~~~~~~~i~~~-Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~ 157 (405)
+..+.+.++...- -.+++++ +|++.....|.++.+++.+.|.
T Consensus 112 ~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 112 NGVVRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIA 155 (160)
T ss_pred CCceeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHH
Confidence 3334444444432 3455666 8888888899999999988775
No 451
>COG3411 Ferredoxin [Energy production and conversion]
Probab=21.46 E-value=2e+02 Score=19.05 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=25.4
Q ss_pred CcEEEEEeCCCccccCCCCCCHHHHHHHHHHHhc-Cce
Q 015527 341 PRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLE-DKL 377 (405)
Q Consensus 341 ~p~i~i~~~~~~~y~~~~~~~~~~l~~Fi~~~~~-Gkl 377 (405)
-|.++++. .+.+|. ..+++...++++..+. |+.
T Consensus 17 gPvl~vYp-egvWY~---~V~p~~a~rIv~~hl~~Gr~ 50 (64)
T COG3411 17 GPVLVVYP-EGVWYT---RVDPEDARRIVQSHLLGGRP 50 (64)
T ss_pred CCEEEEec-CCeeEe---ccCHHHHHHHHHHHHhCCCc
Confidence 47888876 567775 3688999999999987 554
No 452
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=21.01 E-value=1.3e+02 Score=23.08 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=16.6
Q ss_pred EEEEEecCCChhHhhhHHHHHH
Q 015527 76 VMVMFYANWCYWSKKLAPEFAA 97 (405)
Q Consensus 76 ~~v~f~a~~C~~C~~~~~~~~~ 97 (405)
++..|.-+.|..|++....+++
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~ 23 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKA 23 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHH
Confidence 3456778999999998766654
No 453
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=20.99 E-value=1.3e+02 Score=21.92 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=23.2
Q ss_pred EEecCCCcHHHHHHHHHHHHHhc-CcEEEEEEEcCCcchhhhhhh
Q 015527 289 LFAPAYGSDKVILTFEEVAKALK-GKLLHVYVEMNSEGVGRRVSQ 332 (405)
Q Consensus 289 ~f~~~~~~~~~~~~~~~va~~~~-~~~~f~~id~~~~~~~~~~~~ 332 (405)
+++......++.+.=+++-.-+. .+|.|-.+|....+-.+.+++
T Consensus 6 y~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr 50 (99)
T PF04908_consen 6 YISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMR 50 (99)
T ss_dssp EE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHH
T ss_pred EEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHH
Confidence 34444445566655555555443 579999999997743444444
No 454
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.83 E-value=3.6e+02 Score=25.08 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=56.4
Q ss_pred CCCcEEEEEecCCChhHhhhHHHHHHHHHHccCCcEEEEEeCcccHhHHHhCCCcccceEEEEeCCeeeeeecCCCCHHH
Q 015527 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDV 151 (405)
Q Consensus 72 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (405)
++..-+=-|++-.|..|-..-..+.-++-. +.++.-..||..-..+-.+.-+|.+.||+++ ||+. --.|.++.++
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvl-Np~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~--fg~GRmtlee 189 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVL-NPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEE--FGQGRMTLEE 189 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhc-CCCceeEEecchhhHhHHHhccceecceEEE--cchh--hcccceeHHH
Confidence 355667778888899998777777655443 4478889998776666666779999999855 5522 1246677777
Q ss_pred HHHHHH
Q 015527 152 ISAWVR 157 (405)
Q Consensus 152 l~~~i~ 157 (405)
|..-|.
T Consensus 190 ilaki~ 195 (520)
T COG3634 190 ILAKID 195 (520)
T ss_pred HHHHhc
Confidence 765443
No 455
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=20.40 E-value=1.3e+02 Score=19.48 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=6.6
Q ss_pred CcchhhHHHHHHHHH
Q 015527 1 MEKTKTLLLLLTSSI 15 (405)
Q Consensus 1 M~~~~~~~~~~~~~~ 15 (405)
|+.+.+++.++++++
T Consensus 1 MA~Kl~vialLC~aL 15 (65)
T PF10731_consen 1 MASKLIVIALLCVAL 15 (65)
T ss_pred CcchhhHHHHHHHHH
Confidence 555444444444333
Done!