Query 015529
Match_columns 405
No_of_seqs 148 out of 177
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 07:09:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2625 Uncharacterized conser 100.0 2.3E-91 5E-96 649.2 8.4 302 87-395 1-309 (348)
2 PF06159 DUF974: Protein of un 100.0 9.7E-75 2.1E-79 558.2 27.5 234 88-321 1-249 (249)
3 PF07919 Gryzun: Gryzun, putat 99.5 8.6E-11 1.9E-15 124.5 30.5 297 88-399 177-537 (554)
4 PF08626 TRAPPC9-Trs120: Trans 97.8 0.0062 1.4E-07 71.2 24.7 295 90-397 788-1181(1185)
5 PF12735 Trs65: TRAPP traffick 96.1 0.49 1.1E-05 47.5 18.1 74 327-402 157-275 (306)
6 PF07705 CARDB: CARDB; InterP 94.2 0.35 7.5E-06 38.9 8.5 70 326-401 2-71 (101)
7 PF10633 NPCBM_assoc: NPCBM-as 94.1 0.14 3.1E-06 40.5 5.9 72 100-175 4-78 (78)
8 KOG4386 Uncharacterized conser 93.3 0.36 7.8E-06 51.5 8.5 126 263-398 631-759 (809)
9 PF14874 PapD-like: Flagellar- 93.1 1.1 2.3E-05 36.9 9.7 73 93-172 12-86 (102)
10 PF07919 Gryzun: Gryzun, putat 93.0 11 0.00024 40.2 19.7 203 195-397 11-263 (554)
11 PF00927 Transglut_C: Transglu 92.5 1 2.2E-05 37.6 9.0 63 334-398 6-73 (107)
12 PF07705 CARDB: CARDB; InterP 92.2 1 2.2E-05 36.2 8.2 77 93-176 11-87 (101)
13 PF00207 A2M: Alpha-2-macroglo 86.4 3.5 7.7E-05 33.5 7.3 44 321-366 49-92 (92)
14 PF10633 NPCBM_assoc: NPCBM-as 84.4 2.6 5.7E-05 33.1 5.4 56 340-398 2-57 (78)
15 PF05753 TRAP_beta: Translocon 84.1 7 0.00015 36.4 8.9 82 98-180 35-118 (181)
16 PF11797 DUF3324: Protein of u 82.5 7.4 0.00016 34.5 8.1 92 95-190 33-129 (140)
17 smart00809 Alpha_adaptinC2 Ada 79.2 26 0.00056 28.6 9.9 74 100-177 17-90 (104)
18 PF02883 Alpha_adaptinC2: Adap 78.2 36 0.00079 28.4 10.6 75 99-177 22-101 (115)
19 PF00927 Transglut_C: Transglu 71.2 7.2 0.00016 32.4 4.5 75 95-171 9-87 (107)
20 PF03896 TRAP_alpha: Transloco 63.3 81 0.0018 31.6 10.8 92 87-180 85-183 (285)
21 KOG3865 Arrestin [Signal trans 60.2 25 0.00054 35.8 6.5 31 98-128 207-237 (402)
22 PF06159 DUF974: Protein of un 56.8 23 0.0005 34.5 5.6 61 338-398 9-74 (249)
23 PF14524 Wzt_C: Wzt C-terminal 55.3 54 0.0012 27.6 7.1 95 96-194 30-130 (142)
24 TIGR03769 P_ac_wall_RPT actino 52.7 30 0.00065 24.4 4.2 34 159-192 8-41 (41)
25 PF01345 DUF11: Domain of unkn 51.3 24 0.00052 27.4 3.9 33 94-126 34-66 (76)
26 PF14874 PapD-like: Flagellar- 50.5 60 0.0013 26.3 6.4 54 338-396 15-68 (102)
27 KOG3865 Arrestin [Signal trans 50.0 73 0.0016 32.5 7.8 78 323-402 190-277 (402)
28 PF12584 TRAPPC10: Trafficking 49.9 1.5E+02 0.0033 26.2 9.4 64 336-402 24-98 (147)
29 PF01345 DUF11: Domain of unkn 49.4 59 0.0013 25.1 5.9 47 321-369 19-65 (76)
30 PF08626 TRAPPC9-Trs120: Trans 49.0 3.2E+02 0.0069 32.7 14.3 46 322-367 775-823 (1185)
31 PF09624 DUF2393: Protein of u 47.2 1.3E+02 0.0028 26.5 8.5 73 99-171 60-145 (149)
32 COG2847 Copper(I)-binding prot 47.1 1.5E+02 0.0032 27.1 8.7 102 90-202 19-140 (151)
33 COG1361 S-layer domain [Cell e 41.6 4.5E+02 0.0098 27.8 16.3 151 86-237 152-312 (500)
34 PF11614 FixG_C: IG-like fold 39.6 1.1E+02 0.0024 25.7 6.6 69 323-396 6-79 (118)
35 PF14796 AP3B1_C: Clathrin-ada 39.5 55 0.0012 29.5 4.8 79 79-162 64-142 (145)
36 TIGR01451 B_ant_repeat conserv 38.9 53 0.0012 24.1 3.9 30 97-126 8-37 (53)
37 PF14796 AP3B1_C: Clathrin-ada 37.9 64 0.0014 29.1 4.9 48 345-396 87-135 (145)
38 PF00630 Filamin: Filamin/ABP2 36.8 2.2E+02 0.0047 22.7 8.3 67 97-172 17-90 (101)
39 PF00635 Motile_Sperm: MSP (Ma 35.4 1.6E+02 0.0035 23.8 6.8 49 342-398 17-66 (109)
40 PF00207 A2M: Alpha-2-macroglo 32.6 1.7E+02 0.0037 23.5 6.3 38 189-226 49-89 (92)
41 PF12735 Trs65: TRAPP traffick 30.0 4.2E+02 0.0092 26.5 9.9 45 143-187 257-301 (306)
42 cd05755 Ig2_ICAM-1_like Second 28.4 58 0.0013 27.3 2.9 25 330-354 4-28 (100)
43 PF08752 COP-gamma_platf: Coat 28.1 1.8E+02 0.0039 26.4 6.2 48 345-395 50-98 (151)
44 PF02752 Arrestin_C: Arrestin 27.9 1.6E+02 0.0034 24.3 5.6 42 327-369 4-46 (136)
45 PF08033 Sec23_BS: Sec23/Sec24 27.5 1E+02 0.0022 25.1 4.2 39 144-182 45-85 (96)
46 PF14728 PHTB1_C: PTHB1 C-term 27.1 2.9E+02 0.0062 28.8 8.3 81 106-190 2-85 (377)
47 TIGR01451 B_ant_repeat conserv 26.7 1.1E+02 0.0025 22.4 3.9 41 336-378 5-45 (53)
48 PF09478 CBM49: Carbohydrate b 26.2 1.8E+02 0.0038 23.1 5.2 55 100-155 15-76 (80)
49 PF03944 Endotoxin_C: delta en 24.9 2E+02 0.0043 25.3 5.8 26 209-234 117-143 (143)
50 PF01880 Desulfoferrodox: Desu 24.4 2.5E+02 0.0054 23.3 6.0 61 331-399 11-73 (96)
51 cd03172 SORL_classII Superoxid 24.0 72 0.0016 26.9 2.7 30 331-360 10-39 (104)
52 PF02752 Arrestin_C: Arrestin 23.9 1.2E+02 0.0026 25.0 4.2 29 97-125 16-44 (136)
53 PF04314 DUF461: Protein of un 23.7 2.5E+02 0.0054 23.6 6.0 62 102-172 15-85 (110)
54 PF06328 Lep_receptor_Ig: Ig-l 20.4 2.3E+02 0.005 23.2 4.9 45 338-383 14-61 (89)
No 1
>KOG2625 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.3e-91 Score=649.20 Aligned_cols=302 Identities=30% Similarity=0.523 Sum_probs=278.1
Q ss_pred cccccccccceeeccceEEEEEEecCCCcceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEeccccCce
Q 015529 87 LLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAH 166 (405)
Q Consensus 87 ~L~LP~sFG~iylGETFs~yisv~N~s~~~v~~V~ikaelQT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~helKE~G~H 166 (405)
+|.+||.||+|||||||++||++||+|++.|++|.+|+|+||.+||+.|... .....+|+|.++.|.||+|||||+|+|
T Consensus 1 ~l~~pq~f~niflgetfs~yinv~nds~k~v~~i~lk~dlqtssqrl~l~~s-~~~~aei~~~~c~~~vi~hevkeig~h 79 (348)
T KOG2625|consen 1 MLIAPQMFENIFLGETFSFYINVHNDSEKTVKDILLKADLQTSSQRLNLPAS-NAAAAEIEPDCCEDDVIHHEVKEIGQH 79 (348)
T ss_pred CccchhhhcceeeccceEEEEEEecchhhhhhhheeeecccccceeeccccc-hhhhhhcCccccchhhhhHHHHhhccE
Confidence 4789999999999999999999999999999999999999999999999653 345678999999999999999999999
Q ss_pred EEEEEEEEEcCCCcccccceeeeEEeeCCeEEeEEEEEe-------CCeeEEEEEEEecCCccEEEEeEEeeecCCceee
Q 015529 167 TLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVV-------KEITFLEACIENHTKSNLYMDQVEFEPSQNWSAT 239 (405)
Q Consensus 167 iLvc~V~Y~~~~Ge~~~frK~fkF~v~~PL~VkTK~~~~-------~~~~~LEaqlqN~s~~~l~Le~v~lep~~~~~~~ 239 (405)
+|+|+|+|++.+||++||||||||+|.+|++||||||++ .|++||||||||+|..+|+||+|+|+|+.+|.++
T Consensus 80 ilicavny~tq~ge~myfrkffkf~v~kpidvktkfynaesdlssv~~dvfleaqien~s~a~mflekv~ldps~~ynvt 159 (348)
T KOG2625|consen 80 ILICAVNYKTQAGEKMYFRKFFKFPVLKPIDVKTKFYNAESDLSSVNDDVFLEAQIENMSNANMFLEKVELDPSIHYNVT 159 (348)
T ss_pred EEEEEEeeeccCccchhHHhhccccccccccccceeecccccccccchhhhhhhhhhcccccchhhhhhccCchheecce
Confidence 999999999999999999999999999999999999976 5789999999999999999999999999999999
Q ss_pred eecCCCCCCCCCCCcccccCCceEEcCCCCeeeEEEEEeecCCCCCCCccccCCeeeeEEEEEEecCCCCceeeeeeccc
Q 015529 240 MLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRLQTQQIL 319 (405)
Q Consensus 240 ~ln~~~~~~~~~~~~~~~~~~~~l~~~~~d~rqyLf~l~p~~~~~~~~~~~~g~~~lGkLdI~WRs~~Ge~G~LqTs~L~ 319 (405)
+++.+.+.++.-++++ ..- +++|.|+|||||||+||.+..++..-.++.+.+|||||.||++|||+|||||++||
T Consensus 160 ~i~~~~e~gdcvstfg----~~~-~lkp~d~rq~l~cl~pk~d~~~~~gi~k~lt~igkldi~wktnlgekgrlqts~lq 234 (348)
T KOG2625|consen 160 EIAHEDEAGDCVSTFG----SGA-LLKPKDIRQFLFCLKPKADFAEKAGIIKDLTSIGKLDISWKTNLGEKGRLQTSALQ 234 (348)
T ss_pred eecchhhccccccccc----ccc-ccCccchhhheeecCchHHHHHhhccccccceeeeeEEEeeccccccccchHHHHH
Confidence 9998877776554433 222 35688999999999999888755544788999999999999999999999999999
Q ss_pred cccCcCCCeEEEEEecCceeEeCCcEEEEEEEEeCCCCceecEEEEEecCCCCCeeEEEEcceeeeeccCCceeee
Q 015529 320 GTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMVTQFGWLIET 395 (405)
Q Consensus 320 ~~~~~~~dl~l~v~~~P~~v~v~~PF~~~~~v~N~s~r~m~~l~l~v~~~~~~~~~~~~~~~~~lg~l~p~~~~~~ 395 (405)
|.+|+|+|+||+++.+|+.|.+++||.++|+++|||+|.|+ |.+++++....-+.||||||++||+|+|.+.++-
T Consensus 235 riapgygdvrlsle~~p~~vdleepf~iscki~ncserald-l~l~l~~~nnrhi~~c~~sg~qlgkl~ps~~l~~ 309 (348)
T KOG2625|consen 235 RIAPGYGDVRLSLEAIPACVDLEEPFEISCKITNCSERALD-LQLELCNPNNRHIHFCGISGRQLGKLHPSQHLCF 309 (348)
T ss_pred hhcCCCCceEEEeeccccccccCCCeEEEEEEcccchhhhh-hhhhhcCCCCceeEEeccccccccCCCCcceeee
Confidence 99999999999999999999999999999999999999997 9999999844449999999999999999998764
No 2
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=100.00 E-value=9.7e-75 Score=558.17 Aligned_cols=234 Identities=44% Similarity=0.706 Sum_probs=208.4
Q ss_pred ccccccccceeeccceEEEEEEecCCCcceeeEEEEEEEeCCCc--eeeccCCCCC--CccccCCCCeeeEEEEEecccc
Q 015529 88 LVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQ--RILLLDTSKS--PVESIRAGGRYDFIVEHDVKEL 163 (405)
Q Consensus 88 L~LP~sFG~iylGETFs~yisv~N~s~~~v~~V~ikaelQT~s~--r~~L~~~~~~--~~~~L~pg~~ld~iv~helKE~ 163 (405)
|+||+|||+|||||||+||||+||+++++|++|.|||||||+++ |+.|.++... +..+|+||+++|+||+|||||+
T Consensus 1 L~LP~sfG~iylGEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~L~~~~~~~~~~~~L~p~~~l~~iv~~~lkE~ 80 (249)
T PF06159_consen 1 LTLPQSFGSIYLGETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQSLRLPLSDNENSDSPVASLAPGESLDFIVSHELKEL 80 (249)
T ss_pred CCCCcccCCEeecCCEEEEEEeecCCCCceEEeEEEEEEeCCCCCccccCCCCccccccccccCCCCeEeEEEEEEeeec
Confidence 78999999999999999999999999999999999999999999 9999876544 5678999999999999999999
Q ss_pred CceEEEEEEEEEcC---CCcccccceeeeEEeeCCeEEeEEEEEeCC--------eeEEEEEEEecCCccEEEEeEEeee
Q 015529 164 GAHTLVCTALYSDG---EGERKYLPQFFKFIVSNPLSVRTKVRVVKE--------ITFLEACIENHTKSNLYMDQVEFEP 232 (405)
Q Consensus 164 G~HiLvc~V~Y~~~---~Ge~~~frK~fkF~v~~PL~VkTK~~~~~~--------~~~LEaqlqN~s~~~l~Le~v~lep 232 (405)
|+|+|+|+|+|+++ +||+|+|||||||+|.+||+||||++++.+ ++||||||||+|+.||+||+|+|||
T Consensus 81 G~h~L~c~VsY~~~~~~~g~~~tfRK~ykF~v~~PL~VktK~~~~~~~~~~~~~~~~~LEaqlqN~s~~pl~Le~v~lep 160 (249)
T PF06159_consen 81 GNHTLVCTVSYTDPTETSGERRTFRKFYKFQVLNPLSVKTKVYNLEDDSSLSPRERVFLEAQLQNISSGPLFLEKVKLEP 160 (249)
T ss_pred CceEEEEEEEEecCcccCCccceEeeeeEEeCCCCcEEEEEEEecCCccccccceeEEEEEEEEecCCCceEEEEEEeec
Confidence 99999999999999 999999999999999999999999999976 8999999999999999999999999
Q ss_pred cCCceeeeecCCCCCCCCCCCcccccCCceEEcCCCCeeeEEEEEeecCCCCCCCccccCCeeeeEEEEEEecCCCCcee
Q 015529 233 SQNWSATMLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGR 312 (405)
Q Consensus 233 ~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~l~~~~~d~rqyLf~l~p~~~~~~~~~~~~g~~~lGkLdI~WRs~~Ge~G~ 312 (405)
.++|++.++||+....+.+....+.......+++|+|+|||||+|+++.+........+|+++||||||.||++|||+||
T Consensus 161 ~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~~~L~P~d~~qylF~l~~~~~~~~~~~~~~~~~~lGkL~I~WRs~~Ge~Gr 240 (249)
T PF06159_consen 161 SPGFKVTDLNWEPSGESSDGEFGGISSGSRPYLQPGDVRQYLFCLTPKPEGAQNDSGADGRTNLGKLDIVWRSNMGERGR 240 (249)
T ss_pred CCCceeEecccccccccccccccccccCCcceeCCCCEEEEEEEEEECCccccccccccCcceeeEEEEEEECCCCCCce
Confidence 99999999998765433222111111122345789999999999999988443556688999999999999999999999
Q ss_pred eeeeccccc
Q 015529 313 LQTQQILGT 321 (405)
Q Consensus 313 LqTs~L~~~ 321 (405)
|||++|+|+
T Consensus 241 LqT~~L~rr 249 (249)
T PF06159_consen 241 LQTSQLQRR 249 (249)
T ss_pred eehhhcccC
Confidence 999999874
No 3
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=99.46 E-value=8.6e-11 Score=124.54 Aligned_cols=297 Identities=15% Similarity=0.172 Sum_probs=195.2
Q ss_pred ccccccccceeeccceEEEEEEecCCCcceeeEEEEEEEeC--------C-Cceee-c--cC-------CCCCCccccCC
Q 015529 88 LVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQT--------D-KQRIL-L--LD-------TSKSPVESIRA 148 (405)
Q Consensus 88 L~LP~sFG~iylGETFs~yisv~N~s~~~v~~V~ikaelQT--------~-s~r~~-L--~~-------~~~~~~~~L~p 148 (405)
+.+|..-+-+|+||.+.--|.+.|........ .+.+.++- . ..... . .+ ....++..|++
T Consensus 177 I~~~~~~~~~l~gE~~~i~i~I~n~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~l~~ 255 (554)
T PF07919_consen 177 IKLPNHKPPALTGEFYPIPITISNNEDEEASG-VLEVRLLHPSQLGVSSEETEDLSQVNWDSDKDDEPLFLGIPLGELAP 255 (554)
T ss_pred EEeCCCCCCeEcCCEEEEEEEEEcCCCcccee-EEEEEEecccccccccccCccceecccccccccchhccCcccccCCC
Confidence 45567888999999999999999998665444 33444440 0 11110 0 00 01123567899
Q ss_pred CCeeeEEEEEeccccCceEEEEEEEEEc--C--CCcccccceeeeEEeeCCe----EEeEEEEE----------------
Q 015529 149 GGRYDFIVEHDVKELGAHTLVCTALYSD--G--EGERKYLPQFFKFIVSNPL----SVRTKVRV---------------- 204 (405)
Q Consensus 149 g~~ld~iv~helKE~G~HiLvc~V~Y~~--~--~Ge~~~frK~fkF~v~~PL----~VkTK~~~---------------- 204 (405)
|++....+.......|.+.|.+++.|.. . .+-.-+-.+-+++.+.+|| ++.++++.
T Consensus 256 ~~s~~~~l~i~~~~~~~~~L~i~~~Y~l~~~~~~~~~i~~~~~~~l~~~~PF~~~y~~~~~~~~~~~~~p~~f~~~~~~~ 335 (554)
T PF07919_consen 256 GSSITVTLYIRTSRPGEYELSISVSYHLDVESDPETPISKTKTVQLPVINPFEANYDFSPRFHPDPWDMPSPFDVDGSSD 335 (554)
T ss_pred CCcEEEEEEEEeCCceeEEEEEEEEEEEecCCCCceeEEEeEEEeeeEEcCEEeeeeEEeeeccCCccCCcccccccccc
Confidence 9998888888899999999999999964 2 2223345566999999999 66667752
Q ss_pred ------------------eCCeeEEEEEEEecCCccEEEEeEEeeecCCceeeeecCCCCCCCCCCCcccccCCceEEcC
Q 015529 205 ------------------VKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIFKPPVLIRS 266 (405)
Q Consensus 205 ------------------~~~~~~LEaqlqN~s~~~l~Le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~l~~~ 266 (405)
.+.+++|.+.+++.+..+|.++++.|+-................. .+ . .. ..++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~a~~~L~I~~~~l~~~~~~~~~~~~~~~~~~~--~~-~----~~-~~l~ 407 (554)
T PF07919_consen 336 FQTLNPEPLTRDGILSVGLNQPWCLNSDIESFAPEPLEIEDISLEVLSSNGGASCDVSSEDSS--SP-E----SG-TVLQ 407 (554)
T ss_pred cccccccccccccccccccCCCeEEEccceecCCCceEEEEEEEEEecCCCceeeeecccccc--CC-C----cc-ceeC
Confidence 134589999999999999999999998765433322111100000 00 0 01 1234
Q ss_pred CCCeeeEEEEEeecCCCCCCCccccCCeeeeEEEEEEec-CCCCceeeeeeccccc--cCcCCCeEEEEEecCceeEeCC
Q 015529 267 GGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRT-NLGEPGRLQTQQILGT--TITSKEIELNVVEVPSVVGIDK 343 (405)
Q Consensus 267 ~~d~rqyLf~l~p~~~~~~~~~~~~g~~~lGkLdI~WRs-~~Ge~G~LqTs~L~~~--~~~~~dl~l~v~~~P~~v~v~~ 343 (405)
+++.+.--|++....... ..........+|.+.|.||+ .-+..+...+..+.-. ......+++.+ +.|....++.
T Consensus 408 ~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~g~~~I~WrR~~~~s~~~~~~t~l~lP~~~v~~~~~~v~~-~~p~~~~~~~ 485 (554)
T PF07919_consen 408 PGECREDQFCLRLDVQKL-SLDDRRNVTLLGSLVIKWRRNSSNSSDPVVTTPLPLPRVNVPSSPLRVLA-SVPPSAIVGE 485 (554)
T ss_pred cccccccccccccccccc-ccccCccceeEEEEEEEEEECCCCCCCceEEEEeecCceEccCCCcEEEE-ecCCccccCc
Confidence 567776666633111110 11112345789999999999 4555566666666432 23455666654 5799999999
Q ss_pred cEEEEEEEEeCCCCceecEEEEEecCCCCCeeEEEEcceeeeeccCCceeeeeeEE
Q 015529 344 PFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMVTQFGWLIETIFMW 399 (405)
Q Consensus 344 PF~~~~~v~N~s~r~m~~l~l~v~~~~~~~~~~~~~~~~~lg~l~p~~~~~~~~~~ 399 (405)
||++.+.|.|+|.+... +.+.|..+ +.|.|.|.--..+- |-|.+.-..-+.-
T Consensus 486 ~~~l~~~I~N~T~~~~~-~~~~me~s--~~F~fsG~k~~~~~-llP~s~~~~~y~l 537 (554)
T PF07919_consen 486 PFTLSYTIENPTNHFQT-FELSMEPS--DDFMFSGPKQTTFS-LLPFSRHTVRYNL 537 (554)
T ss_pred EEEEEEEEECCCCccEE-EEEEEccC--CCEEEECCCcCceE-ECCCCcEEEEEEE
Confidence 99999999999999998 99999777 45999997654444 6666666554443
No 4
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=97.76 E-value=0.0062 Score=71.19 Aligned_cols=295 Identities=16% Similarity=0.180 Sum_probs=166.5
Q ss_pred ccccccceeeccceEEEEEEecCCCcceeeEEEEEEEeCC-Cceeecc----------CCC-----CC-----CccccCC
Q 015529 90 LPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTD-KQRILLL----------DTS-----KS-----PVESIRA 148 (405)
Q Consensus 90 LP~sFG~iylGETFs~yisv~N~s~~~v~~V~ikaelQT~-s~r~~L~----------~~~-----~~-----~~~~L~p 148 (405)
++++-=.+|=||+..+.|.+.|.|+.+|..+.+...=-|. .-...+. +.+ .. ....|.|
T Consensus 788 l~~~~~mlleGE~~~~~ItL~N~S~~pvd~l~~sf~DS~~~~~~~~l~~k~l~~~e~yelE~~l~~~~~~~i~~~~~I~P 867 (1185)
T PF08626_consen 788 LTQGALMLLEGEKQTFTITLRNTSSVPVDFLSFSFQDSTIEPLQKALSNKDLSPDELYELEWQLFKLPAFRILNKPPIPP 867 (1185)
T ss_pred CCCcceEEECCcEEEEEEEEEECCccccceEEEEEEeccHHHHhhhhhcccCChhhhhhhhhhhhcCcceeecccCccCC
Confidence 5555556799999999999999999999999888741110 0000110 000 00 0117899
Q ss_pred CCeeeEEEEEecccc--CceEEEEEEEEEc--CCCccccccee---eeEEeeCCeEEe-EEEEEe---------------
Q 015529 149 GGRYDFIVEHDVKEL--GAHTLVCTALYSD--GEGERKYLPQF---FKFIVSNPLSVR-TKVRVV--------------- 205 (405)
Q Consensus 149 g~~ld~iv~helKE~--G~HiLvc~V~Y~~--~~Ge~~~frK~---fkF~v~~PL~Vk-TK~~~~--------------- 205 (405)
|++..+-++.+-|.. ..+-....+.|.. .+++..+.|++ +...|.+-++|. -.+..+
T Consensus 868 g~~~~~~~~~~~~~~~~~~~~~~i~l~y~~~~~~~~~~y~Rql~ipl~vtV~~slev~~~dilp~~~~~~~~~~~~~~~~ 947 (1185)
T PF08626_consen 868 GESATFTVEVDGKPGPIQLTYADIQLEYGYSGEDSSTFYTRQLSIPLTVTVNPSLEVTRCDILPLNSDSVSSNSDSWISY 947 (1185)
T ss_pred CCEEEEEEEecCcccccceeeeeEEEEecccCCCCCCCeeEEEEEEEEEEEeceEEEeeeeEEecccccccccCcchhhh
Confidence 999988888766643 2444444567753 33445555555 444444544332 222222
Q ss_pred ------------CCeeEEEEEEEecCCccEEEEeEEeeecCCceeee--ecCCCCCCCCCC---Ccccc------cC-Cc
Q 015529 206 ------------KEITFLEACIENHTKSNLYMDQVEFEPSQNWSATM--LKADGPHSDYNA---QSREI------FK-PP 261 (405)
Q Consensus 206 ------------~~~~~LEaqlqN~s~~~l~Le~v~lep~~~~~~~~--ln~~~~~~~~~~---~~~~~------~~-~~ 261 (405)
.+-.+|..-|.|....+|.++ +.+ ...+...+ +.. +.... |...+ +. .|
T Consensus 948 ~~~~~~~~~~~~~~~clL~lDlrNsw~~~~~v~-l~~--~~~~~~~~~~I~p----g~t~Ri~vPi~Ri~l~~~~~~~~p 1020 (1185)
T PF08626_consen 948 ITSLKSDVNDDSSDYCLLLLDLRNSWPNPLSVN-LHY--DEDFSSSEITIEP----GHTSRIIVPIKRIYLEDPDFSFKP 1020 (1185)
T ss_pred hhhhcccccCCCCCeEEEEEEEEecCCCceEEE-EEe--ccCccccceEECC----CCeEEEEEEecccccCCcccccCc
Confidence 233788999999999988732 111 11222111 111 00000 01111 01 11
Q ss_pred eEEcCCCCeeeEEEEEeecCCCCCCCccccC----CeeeeEEEEEEecCCCCceeeeeeccc----cc--cCcCCCeEEE
Q 015529 262 VLIRSGGGIHNYLYQLKMLSHGSSSPVKVQG----SNVLGKLQITWRTNLGEPGRLQTQQIL----GT--TITSKEIELN 331 (405)
Q Consensus 262 ~l~~~~~d~rqyLf~l~p~~~~~~~~~~~~g----~~~lGkLdI~WRs~~Ge~G~LqTs~L~----~~--~~~~~dl~l~ 331 (405)
. .+....|||+=. +....+.....+. ...+-+|...|+...|..|.+.--.+. ++ ....+++++.
T Consensus 1021 i--p~l~~~rqfv~s---k~s~eee~~~re~FW~RE~ll~~l~~~W~~~~~~~G~i~lR~~irLt~~mv~~L~~~~i~i~ 1095 (1185)
T PF08626_consen 1021 I--PSLSRNRQFVVS---KLSEEEERAMRELFWYREELLSRLKGTWKESSNSSGEIDLRGIIRLTPRMVDILRLDPIQID 1095 (1185)
T ss_pred C--CCcccCceeEEC---CCCHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCcEEEEcccccccCHHHHHhhccCccceE
Confidence 1 122345676422 2111101011111 256889999999877779977765551 22 2345555544
Q ss_pred EE--ec-Cc---------eeEeCCcEEEEEEEEeCCCCceecEEEEE--ec------CCCCC-eeEEEEcceeeeeccCC
Q 015529 332 VV--EV-PS---------VVGIDKPFLLKLKLTNQTDKEQGPFEIWL--SQ------NDSDE-EKVVMINGLRIMVTQFG 390 (405)
Q Consensus 332 v~--~~-P~---------~v~v~~PF~~~~~v~N~s~r~m~~l~l~v--~~------~~~~~-~~~~~~~~~~lg~l~p~ 390 (405)
+. .. ++ .|.+++.++++++|+|+|++++. +.+.. +. -++.. ++|.|.+-..+..|+|+
T Consensus 1096 ~~l~~~~~~~~~~~~~~~~v~~~~f~~l~v~i~N~s~~~i~-l~~~~~~~~~~~~~~~~~~~ril~~G~Lq~~l~~l~p~ 1174 (1185)
T PF08626_consen 1096 FSLSDDSDSVKVGESSKFSVQVDEFYTLRVTITNRSSRPIS-LRLQPSLDHQNGNVALDLDRRILWNGSLQQPLPELEPG 1174 (1185)
T ss_pred EEEcccccccccCcceeEEEecCCcEEEEEEeecCCCCcee-eEeeeeccCCCcccccCcCCeEEEEccCcccccccCCC
Confidence 43 22 22 36799999999999999999987 43222 11 12233 99999999999999999
Q ss_pred ceeeeee
Q 015529 391 WLIETIF 397 (405)
Q Consensus 391 ~~~~~~~ 397 (405)
.+.+.=|
T Consensus 1175 ~~~~~~~ 1181 (1185)
T PF08626_consen 1175 ESTEHEL 1181 (1185)
T ss_pred ceEEEEE
Confidence 9887644
No 5
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=96.12 E-value=0.49 Score=47.48 Aligned_cols=74 Identities=19% Similarity=0.320 Sum_probs=59.2
Q ss_pred CeEEEEEecCceeEeCCcEEEEEEEEeCCCCceecEEEEEecCC------------------------------------
Q 015529 327 EIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQND------------------------------------ 370 (405)
Q Consensus 327 dl~l~v~~~P~~v~v~~PF~~~~~v~N~s~r~m~~l~l~v~~~~------------------------------------ 370 (405)
.+.++.. -|..|++|++|+.++.|.|.|+..++ |+|.+.+..
T Consensus 157 gv~~sF~-gp~~V~~Ge~F~w~v~ivN~S~~~r~-L~l~~~~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~v~~en~~~ 234 (306)
T PF12735_consen 157 GVTFSFS-GPSSVKVGEPFSWKVFIVNRSSSPRK-LALYVPPRRRRNDERSNSPPPNPSSSSNLNNKQIADAVTDENIVQ 234 (306)
T ss_pred CeEEEEe-CCceEecCCeEEEEEEEEECCCCCee-EEEEecCccccccccccCCCCCcccccccccccccccceehhHHH
Confidence 4555543 45899999999999999999999997 999998810
Q ss_pred -----C----CCeeEEEEcceeeeeccCCceeeeeeEEEEe
Q 015529 371 -----S----DEEKVVMINGLRIMVTQFGWLIETIFMWISL 402 (405)
Q Consensus 371 -----~----~~~~~~~~~~~~lg~l~p~~~~~~~~~~~~~ 402 (405)
. .....|.=+-+.+|.|.||...++=.-+|.+
T Consensus 235 ~~~~~~~~~~~~gli~LsnDiriGpL~P~~c~~~eL~fi~l 275 (306)
T PF12735_consen 235 AMQKYSSVEESTGLICLSNDIRIGPLAPGACYSVELRFIAL 275 (306)
T ss_pred HhhhhcccccCCceEEecccccccccCCCceEEEEEEEEEe
Confidence 0 2357788889999999999999987766654
No 6
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=94.21 E-value=0.35 Score=38.93 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=50.0
Q ss_pred CCeEEEEEecCceeEeCCcEEEEEEEEeCCCCceecEEEEEecCCCCCeeEEEEcceeeeeccCCceeeeeeEEEE
Q 015529 326 KEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMVTQFGWLIETIFMWIS 401 (405)
Q Consensus 326 ~dl~l~v~~~P~~v~v~~PF~~~~~v~N~s~r~m~~l~l~v~~~~~~~~~~~~~~~~~lg~l~p~~~~~~~~~~~~ 401 (405)
.||.+.+...|..+..++++++++.|+|.-+.....+.+.+.-+ .... ....++.|+||.+...-|.|..
T Consensus 2 pDL~v~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~--~~~~----~~~~i~~L~~g~~~~v~~~~~~ 71 (101)
T PF07705_consen 2 PDLTVSITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLD--GNSV----STVTIPSLAPGESETVTFTWTP 71 (101)
T ss_dssp --EEE-EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEET--TEEE----EEEEESEB-TTEEEEEEEEEE-
T ss_pred CCEEEEEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEEC--Ccee----ccEEECCcCCCcEEEEEEEEEe
Confidence 57888778899999999999999999999666676788877665 2222 5556689999999988888864
No 7
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.11 E-value=0.14 Score=40.46 Aligned_cols=72 Identities=22% Similarity=0.321 Sum_probs=44.5
Q ss_pred ccceEEEEEEecCCCcceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEeccc---cCceEEEEEEEEE
Q 015529 100 GETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKE---LGAHTLVCTALYS 175 (405)
Q Consensus 100 GETFs~yisv~N~s~~~v~~V~ikaelQT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~helKE---~G~HiLvc~V~Y~ 175 (405)
||++...+.+.|.....+.++.+.+++ |..-. . ......+..|.||++...-+.-.+-+ .|.|.+...+.|+
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~--P~GW~-~-~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~a~y~ 78 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSL--PEGWT-V-SASPASVPSLPPGESVTVTFTVTVPADAAPGTYTVTVTARYT 78 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE----TTSE-----EEEEE--B-TTSEEEEEEEEEE-TT--SEEEEEEEEEE--
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeC--CCCcc-c-cCCccccccCCCCCEEEEEEEEECCCCCCCceEEEEEEEEeC
Confidence 999999999999999999998888776 54332 1 10112245899999887666666643 5999999999995
No 8
>KOG4386 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.28 E-value=0.36 Score=51.52 Aligned_cols=126 Identities=21% Similarity=0.272 Sum_probs=86.6
Q ss_pred EEcCCCCeeeEEEEEeecCCCCCCCccccCCeeeeEEEEEEec--CCCCceeeeeeccccccCcCCCeEEEEEe-cCcee
Q 015529 263 LIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRT--NLGEPGRLQTQQILGTTITSKEIELNVVE-VPSVV 339 (405)
Q Consensus 263 l~~~~~d~rqyLf~l~p~~~~~~~~~~~~g~~~lGkLdI~WRs--~~Ge~G~LqTs~L~~~~~~~~dl~l~v~~-~P~~v 339 (405)
++++-|+...-.||+.--. ....+|.+..|+.-|.||+ +|-..-...| -+.-.-..-..+-|+|.. +|+.-
T Consensus 631 vilqtgEsasecfclqcps-----lgniEggvatGhyiisWkRtsameNipiitt-VitLphviVe~iPlhvnadlpsfg 704 (809)
T KOG4386|consen 631 VILQTGESASECFCLQCPS-----LGNIEGGVATGHYIISWKRTSAMENIPIITT-VITLPHVIVEAIPLHVNADLPSFG 704 (809)
T ss_pred hhhhcccceeeeeeEeccc-----cccccCCCccceEEEEEeecccccCCCceee-ecccccceeeeccceeecCCCCcc
Confidence 3455677777788887532 2346789999999999998 4444443332 221111223344455543 78888
Q ss_pred EeCCcEEEEEEEEeCCCCceecEEEEEecCCCCCeeEEEEcceeeeeccCCceeeeeeE
Q 015529 340 GIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMVTQFGWLIETIFM 398 (405)
Q Consensus 340 ~v~~PF~~~~~v~N~s~r~m~~l~l~v~~~~~~~~~~~~~~~~~lg~l~p~~~~~~~~~ 398 (405)
.|.+|..+...+.|+||-..+ +++.++++ +-|.|.|--.+.+..| ||..-+-...
T Consensus 705 rVReslpvkyhLqnktdlvqd-veisveps--DaFMFSGlkqirlriL-PGteqemlyn 759 (809)
T KOG4386|consen 705 RVRESLPVKYHLQNKTDLVQD-VEISVEPS--DAFMFSGLKQIRLRIL-PGTEQEMLYN 759 (809)
T ss_pred eecccccEEEEeccccceeee-EEeecccc--hhheecccceEEEEEc-CCCceEEEEE
Confidence 999999999999999999997 99999888 4499988766665544 6666665433
No 9
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=93.09 E-value=1.1 Score=36.86 Aligned_cols=73 Identities=16% Similarity=0.299 Sum_probs=53.1
Q ss_pred cccceeeccceEEEEEEecCCCcceeeEEEEEEEeC-CCceeeccCCCCCCccccCCCCeeeEEEEEe-ccccCceEEEE
Q 015529 93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQT-DKQRILLLDTSKSPVESIRAGGRYDFIVEHD-VKELGAHTLVC 170 (405)
Q Consensus 93 sFG~iylGETFs~yisv~N~s~~~v~~V~ikaelQT-~s~r~~L~~~~~~~~~~L~pg~~ld~iv~he-lKE~G~HiLvc 170 (405)
.||++.+|++-+..|.+.|.+..++ ++++.... .+.-+.... ....|+||.+.+.-|.+. -++.|.+.-..
T Consensus 12 dFG~v~~g~~~~~~v~l~N~s~~p~---~f~v~~~~~~~~~~~v~~----~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l 84 (102)
T PF14874_consen 12 DFGNVFVGQTYSRTVTLTNTSSIPA---RFRVRQPESLSSFFSVEP----PSGFLAPGESVELEVTFSPTKPLGDYEGSL 84 (102)
T ss_pred EeeEEccCCEEEEEEEEEECCCCCE---EEEEEeCCcCCCCEEEEC----CCCEECCCCEEEEEEEEEeCCCCceEEEEE
Confidence 6999999999999999999998874 45555444 223333321 134699999999999999 88889765433
Q ss_pred EE
Q 015529 171 TA 172 (405)
Q Consensus 171 ~V 172 (405)
.|
T Consensus 85 ~i 86 (102)
T PF14874_consen 85 VI 86 (102)
T ss_pred EE
Confidence 33
No 10
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=92.98 E-value=11 Score=40.15 Aligned_cols=203 Identities=12% Similarity=0.165 Sum_probs=110.8
Q ss_pred CeEEeEEEEE----eCCeeEEEEEEEecCCccEEEEeEEeeecCC-ceeeeecCCC-CCCC--CCCCcccccCCceEEcC
Q 015529 195 PLSVRTKVRV----VKEITFLEACIENHTKSNLYMDQVEFEPSQN-WSATMLKADG-PHSD--YNAQSREIFKPPVLIRS 266 (405)
Q Consensus 195 PL~VkTK~~~----~~~~~~LEaqlqN~s~~~l~Le~v~lep~~~-~~~~~ln~~~-~~~~--~~~~~~~~~~~~~l~~~ 266 (405)
+|+.+-.|.. ..+.+.+++.|.+....||.+.++++.=+.. +.......+. .... ........-....|.+.
T Consensus 11 ~l~~~~~F~~~~~~~~~~~~~ql~i~S~~~~pi~~s~l~V~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l~ 90 (554)
T PF07919_consen 11 FLEASVAFSQSEGKVGEPVQFQLSIRSNAPSPIRFSSLKVNFSGSLYPIVISHSDADASSADSSTSSGSPLSGSADLTLS 90 (554)
T ss_pred cEEEEEEEccCCccCCCeEEEEEEEEcCCCCCEEeeEEEEEeeCCCCCceEeccccccccccCcccccccccCccceEEe
Confidence 3445544543 2566888899999999999999998875543 2222111110 0000 00000001123345566
Q ss_pred CCCeeeEEEEEeecCCCCCCCccccC-Ceeee----EEEEEEecCCCCce---eeeeecc---------------ccccC
Q 015529 267 GGGIHNYLYQLKMLSHGSSSPVKVQG-SNVLG----KLQITWRTNLGEPG---RLQTQQI---------------LGTTI 323 (405)
Q Consensus 267 ~~d~rqyLf~l~p~~~~~~~~~~~~g-~~~lG----kLdI~WRs~~Ge~G---~LqTs~L---------------~~~~~ 323 (405)
||.++.|-|.+.++............ ...+| .+.+.|+..-+..+ ...++.. .+-.+
T Consensus 91 p~~~kv~~~~~~~~~~~~~g~~~i~sv~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~I~p 170 (554)
T PF07919_consen 91 PGQTKVFSFKFVPREQDVSGELEITSVTLQLGSDKFDLTLSWSFESSSSSSSFWWWQSSDGPKSRPIRKPRDQSSIRILP 170 (554)
T ss_pred ecceEEEEEEEeccccccCCcEEEEEEEEEEecCeEEEEEEeccccccccccccccccCCcceeeeccCCCCCCEEEEEC
Confidence 88898888888877521101111111 23444 45566766522222 1111111 01124
Q ss_pred cCCCeEEEEEecCceeEeCCcEEEEEEEEeCCCCceec-EEEEEe--------cCCCCCe---eEEE-------Ecceee
Q 015529 324 TSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGP-FEIWLS--------QNDSDEE---KVVM-------INGLRI 384 (405)
Q Consensus 324 ~~~dl~l~v~~~P~~v~v~~PF~~~~~v~N~s~r~m~~-l~l~v~--------~~~~~~~---~~~~-------~~~~~l 384 (405)
....+++.+.+.-....+||.+.+.++|.|..++.... +.+.+- ....... -|.+ ..++++
T Consensus 171 ~pp~v~I~~~~~~~~~l~gE~~~i~i~I~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 250 (554)
T PF07919_consen 171 RPPKVSIKLPNHKPPALTGEFYPIPITISNNEDEEASGVLEVRLLHPSQLGVSSEETEDLSQVNWDSDKDDEPLFLGIPL 250 (554)
T ss_pred CCCCeEEEeCCCCCCeEcCCEEEEEEEEEcCCCccceeEEEEEEecccccccccccCccceecccccccccchhccCccc
Confidence 45677777755556778999999999999998776652 333333 0111111 2333 568899
Q ss_pred eeccCCceeeeee
Q 015529 385 MVTQFGWLIETIF 397 (405)
Q Consensus 385 g~l~p~~~~~~~~ 397 (405)
|.|+++++..-..
T Consensus 251 g~l~~~~s~~~~l 263 (554)
T PF07919_consen 251 GELAPGSSITVTL 263 (554)
T ss_pred ccCCCCCcEEEEE
Confidence 9999999887653
No 11
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=92.54 E-value=1 Score=37.58 Aligned_cols=63 Identities=10% Similarity=0.044 Sum_probs=44.1
Q ss_pred ecCceeEeCCcEEEEEEEEeCCCCceecEEEEE-----ecCCCCCeeEEEEcceeeeeccCCceeeeeeE
Q 015529 334 EVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWL-----SQNDSDEEKVVMINGLRIMVTQFGWLIETIFM 398 (405)
Q Consensus 334 ~~P~~v~v~~PF~~~~~v~N~s~r~m~~l~l~v-----~~~~~~~~~~~~~~~~~lg~l~p~~~~~~~~~ 398 (405)
++++.+.+|++|++.++++|.++..+..+.+.+ ..+.+ ..-+...-...+.|+|+.+...-+.
T Consensus 6 ~~~~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~--~~~~~~~~~~~~~l~p~~~~~~~~~ 73 (107)
T PF00927_consen 6 KLPGDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGL--TRDQFKKEKFEVTLKPGETKSVEVT 73 (107)
T ss_dssp EEESEEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTT--EEEEEEEEEEEEEE-TTEEEEEEEE
T ss_pred EECCCccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCc--ccccEeEEEcceeeCCCCEEEEEEE
Confidence 567788899999999999999999977766665 44422 3445556677788999988776543
No 12
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=92.15 E-value=1 Score=36.17 Aligned_cols=77 Identities=13% Similarity=0.204 Sum_probs=54.2
Q ss_pred cccceeeccceEEEEEEecCCCcceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEeccccCceEEEEEE
Q 015529 93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTA 172 (405)
Q Consensus 93 sFG~iylGETFs~yisv~N~s~~~v~~V~ikaelQT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~helKE~G~HiLvc~V 172 (405)
+-+.++.|+.+...+.|.|.......++.++..+ ...-+ . ...+..|+||++....+.+...+.|.|.+.+.|
T Consensus 11 ~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~--~~~~~---~--~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 11 SPSNVVPGEPVTITVTVKNNGTADAENVTVRLYL--DGNSV---S--TVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp C-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEE--TTEEE---E--EEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred CCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEE--CCcee---c--cEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 3456899999999999999988888888777533 22222 1 122568999999999999999999999999988
Q ss_pred EEEc
Q 015529 173 LYSD 176 (405)
Q Consensus 173 ~Y~~ 176 (405)
.+..
T Consensus 84 D~~n 87 (101)
T PF07705_consen 84 DPDN 87 (101)
T ss_dssp STTT
T ss_pred eeCC
Confidence 6643
No 13
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=86.41 E-value=3.5 Score=33.54 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=32.9
Q ss_pred ccCcCCCeEEEEEecCceeEeCCcEEEEEEEEeCCCCceecEEEEE
Q 015529 321 TTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWL 366 (405)
Q Consensus 321 ~~~~~~dl~l~v~~~P~~v~v~~PF~~~~~v~N~s~r~m~~l~l~v 366 (405)
.....+++.+.+ ++|..++.|+.+.+.+.|.|++++.+. +.|.|
T Consensus 49 ~~~v~~p~~i~~-~lP~~l~~GD~~~i~v~v~N~~~~~~~-v~V~l 92 (92)
T PF00207_consen 49 EITVFKPFFIQL-NLPRSLRRGDQIQIPVTVFNYTDKDQE-VTVTL 92 (92)
T ss_dssp EEEEB-SEEEEE-E--SEEETTSEEEEEEEEEE-SSS-EE-EEEEE
T ss_pred EEEEEeeEEEEc-CCCcEEecCCEEEEEEEEEeCCCCCEE-EEEEC
Confidence 345677888885 899999999999999999999999986 77654
No 14
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=84.35 E-value=2.6 Score=33.15 Aligned_cols=56 Identities=14% Similarity=0.054 Sum_probs=32.6
Q ss_pred EeCCcEEEEEEEEeCCCCceecEEEEEecCCCCCeeEEEEcceeeeeccCCceeeeeeE
Q 015529 340 GIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMVTQFGWLIETIFM 398 (405)
Q Consensus 340 ~v~~PF~~~~~v~N~s~r~m~~l~l~v~~~~~~~~~~~~~~~~~lg~l~p~~~~~~~~~ 398 (405)
.-|+++++++.|+|..+..+..+.+.+.-- +.|. .......+..|+||.+...-|.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P--~GW~-~~~~~~~~~~l~pG~s~~~~~~ 57 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLP--EGWT-VSASPASVPSLPPGESVTVTFT 57 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE----TTSE----EEEEE--B-TTSEEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeCC--CCcc-ccCCccccccCCCCCEEEEEEE
Confidence 458899999999999777665677777543 3466 4556667779999998876554
No 15
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=84.11 E-value=7 Score=36.42 Aligned_cols=82 Identities=21% Similarity=0.215 Sum_probs=62.1
Q ss_pred eeccceEEEEEEecCCCcceeeEEEEEEEeCCCceeeccCCC-CCCccccCCCCeeeEEEEEeccccCceEE-EEEEEEE
Q 015529 98 YLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTS-KSPVESIRAGGRYDFIVEHDVKELGAHTL-VCTALYS 175 (405)
Q Consensus 98 ylGETFs~yisv~N~s~~~v~~V~ikaelQT~s~r~~L~~~~-~~~~~~L~pg~~ld~iv~helKE~G~HiL-vc~V~Y~ 175 (405)
-.|+.....+.+-|.-+.++.||.|.-+= -++..+.|.... ......|.||+++..++.=.=+..|.|.+ ...|+|+
T Consensus 35 v~g~~v~V~~~iyN~G~~~A~dV~l~D~~-fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~ 113 (181)
T PF05753_consen 35 VEGEDVTVTYTIYNVGSSAAYDVKLTDDS-FPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYR 113 (181)
T ss_pred cCCcEEEEEEEEEECCCCeEEEEEEECCC-CCccccEeccCceEEEEEEECCCCeEEEEEEEeeeeeEEEEccCEEEEEE
Confidence 45999999999999999999999997721 144555553321 12356899999888777777789999988 5679999
Q ss_pred cCCCc
Q 015529 176 DGEGE 180 (405)
Q Consensus 176 ~~~Ge 180 (405)
+..|.
T Consensus 114 ~~~~~ 118 (181)
T PF05753_consen 114 DSEGA 118 (181)
T ss_pred CCCCC
Confidence 87663
No 16
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=82.49 E-value=7.4 Score=34.47 Aligned_cols=92 Identities=13% Similarity=0.185 Sum_probs=67.2
Q ss_pred cceeecc---ceEEEEEEecCCCcceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEe--ccccCceEEE
Q 015529 95 GAIYLGE---TFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHD--VKELGAHTLV 169 (405)
Q Consensus 95 G~iylGE---TFs~yisv~N~s~~~v~~V~ikaelQT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~he--lKE~G~HiLv 169 (405)
+++-+|+ ...-.+.+.|....-+.++.+++++.-..+.-.++... .....++|+..+++-|..+ -=..|.|.|.
T Consensus 33 ~~v~~~~~n~~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~-~~~~~mAPNS~f~~~i~~~~~~lk~G~Y~l~ 111 (140)
T PF11797_consen 33 GKVKPGQINGRNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFK-KENMQMAPNSNFNFPIPLGGKKLKPGKYTLK 111 (140)
T ss_pred eeeeeeEECCeeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEee-ccCCEECCCCeEEeEecCCCcCccCCEEEEE
Confidence 4454554 55566778999999999999999999998755554322 2346789999999988875 4456999999
Q ss_pred EEEEEEcCCCcccccceeeeE
Q 015529 170 CTALYSDGEGERKYLPQFFKF 190 (405)
Q Consensus 170 c~V~Y~~~~Ge~~~frK~fkF 190 (405)
.++.+.+ +...|.|-|+-
T Consensus 112 ~~~~~~~---~~W~f~k~F~I 129 (140)
T PF11797_consen 112 ITAKSGK---KTWTFTKDFTI 129 (140)
T ss_pred EEEEcCC---cEEEEEEEEEE
Confidence 9987643 35667665553
No 17
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=79.21 E-value=26 Score=28.62 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=57.1
Q ss_pred ccceEEEEEEecCCCcceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEeccccCceEEEEEEEEEcC
Q 015529 100 GETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDG 177 (405)
Q Consensus 100 GETFs~yisv~N~s~~~v~~V~ikaelQT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~helKE~G~HiLvc~V~Y~~~ 177 (405)
+...+..+.+.|.+..++++..+.+.. ..+..+.+...+ ...|.||+....++...-...+.-.+.+.|+|...
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~av-pk~~~l~l~~~s---~~~l~p~~~i~q~~~i~~~~~~~~~~~~~vsy~~~ 90 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAV-PKSLKLQLQPPS---SPTLPPGGQITQVLKVENPGKFPLRLRLRLSYLLG 90 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEc-ccceEEEEcCCC---CCccCCCCCEEEEEEEECCCCCCEEEEEEEEEEEC
Confidence 445677888899999999999988874 335566664322 24689999888888888888888899999999875
No 18
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=78.17 E-value=36 Score=28.37 Aligned_cols=75 Identities=11% Similarity=0.113 Sum_probs=53.2
Q ss_pred eccceEEEEEEecCCCcceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEec-----cccCceEEEEEEE
Q 015529 99 LGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDV-----KELGAHTLVCTAL 173 (405)
Q Consensus 99 lGETFs~yisv~N~s~~~v~~V~ikaelQT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~hel-----KE~G~HiLvc~V~ 173 (405)
=+...+-.+.+.|.+..+++++.+.+..- .+.++.|... +...|.|++.+...+.-+. .-...=.|.+.|+
T Consensus 22 ~~~~~~i~~~f~N~s~~~it~f~~q~avp-k~~~l~l~~~---s~~~i~p~~~i~Q~~~v~~~~~~~~~~~~l~~~~~vs 97 (115)
T PF02883_consen 22 NPNQGRIKLTFGNKSSQPITNFSFQAAVP-KSFKLQLQPP---SSSTIPPGQQITQVIKVENSPFSEPTPKPLKPRLRVS 97 (115)
T ss_dssp ETTEEEEEEEEEE-SSS-BEEEEEEEEEB-TTSEEEEEES---S-SSB-TTTEEEEEEEEEESS-BSTTSSTTEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCcceEEEEEEec-cccEEEEeCC---CCCeeCCCCeEEEEEEEEEeecccCCCCCcCeEEEEE
Confidence 35667788889999999999999998776 6666766442 2357888999988888888 2222237899999
Q ss_pred EEcC
Q 015529 174 YSDG 177 (405)
Q Consensus 174 Y~~~ 177 (405)
|...
T Consensus 98 y~~~ 101 (115)
T PF02883_consen 98 YNVG 101 (115)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9874
No 19
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=71.24 E-value=7.2 Score=32.42 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=47.2
Q ss_pred cceeeccceEEEEEEecCCCcceeeEEEEEEEeCCC----ceeeccCCCCCCccccCCCCeeeEEEEEeccccCceEEEE
Q 015529 95 GAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDK----QRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVC 170 (405)
Q Consensus 95 G~iylGETFs~yisv~N~s~~~v~~V~ikaelQT~s----~r~~L~~~~~~~~~~L~pg~~ld~iv~helKE~G~HiLvc 170 (405)
|.+.+|+.|...+.+.|.++.++++|.+....++-. .+-.+.. .....+|+||+.....+...-++-|...+.+
T Consensus 9 ~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~--~~~~~~l~p~~~~~~~~~i~p~~yG~~~~l~ 86 (107)
T PF00927_consen 9 GDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKK--EKFEVTLKPGETKSVEVTITPSQYGPKQLLV 86 (107)
T ss_dssp SEEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEE--EEEEEEE-TTEEEEEEEEE-HHSHEEECCEE
T ss_pred CCccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeE--EEcceeeCCCCEEEEEEEEEceeEecchhcc
Confidence 567899999999999999999999988877655532 1111111 1124578888877766666666666644443
Q ss_pred E
Q 015529 171 T 171 (405)
Q Consensus 171 ~ 171 (405)
.
T Consensus 87 ~ 87 (107)
T PF00927_consen 87 D 87 (107)
T ss_dssp E
T ss_pred h
Confidence 3
No 20
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=63.26 E-value=81 Score=31.60 Aligned_cols=92 Identities=15% Similarity=0.205 Sum_probs=71.0
Q ss_pred cccccccccceeeccceEEEEEEecCCCcceeeEEEEEEEeCCCcee----eccCCCCCCccccCCCCeeeEEEEEeccc
Q 015529 87 LLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRI----LLLDTSKSPVESIRAGGRYDFIVEHDVKE 162 (405)
Q Consensus 87 ~L~LP~sFG~iylGETFs~yisv~N~s~~~v~~V~ikaelQT~s~r~----~L~~~~~~~~~~L~pg~~ld~iv~helKE 162 (405)
....|...-.+.-|+.-.+.|.+.|....++.-..|.+-+..|..-- +++-. .-...+.||+...+-..|-..+
T Consensus 85 ~~~F~~~~~~l~aG~~~~~LvgftN~g~~~~~V~~i~aSl~~p~d~~~~iqNfTa~--~y~~~V~pg~~aT~~YsF~~~~ 162 (285)
T PF03896_consen 85 TILFPKPTKKLPAGEPVKFLVGFTNKGSEPFTVESIEASLRYPQDYSYYIQNFTAV--RYNREVPPGEEATFPYSFTPSE 162 (285)
T ss_pred EEEeccccccccCCCeEEEEEEEEeCCCCCEEEEEEeeeecCccccceEEEeeccc--ccCcccCCCCeEEEEEEEecch
Confidence 35556566778999999999999999999999999999999886421 23211 1135789999888888887743
Q ss_pred ---cCceEEEEEEEEEcCCCc
Q 015529 163 ---LGAHTLVCTALYSDGEGE 180 (405)
Q Consensus 163 ---~G~HiLvc~V~Y~~~~Ge 180 (405)
.+.+.|+..+.|.+.+|.
T Consensus 163 ~l~pr~f~L~i~l~y~d~~g~ 183 (285)
T PF03896_consen 163 ELAPRPFGLVINLIYEDSDGN 183 (285)
T ss_pred hcCCcceEEEEEEEEEeCCCC
Confidence 456899999999998885
No 21
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=60.23 E-value=25 Score=35.77 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=27.0
Q ss_pred eeccceEEEEEEecCCCcceeeEEEEEEEeC
Q 015529 98 YLGETFCSYISINNSSTLEVRDVVIKAEIQT 128 (405)
Q Consensus 98 ylGETFs~yisv~N~s~~~v~~V~ikaelQT 128 (405)
|-||..+..++|.|+|++.|+.+.+.|.=.+
T Consensus 207 yHGE~isvnV~V~NNsnKtVKkIK~~V~Q~a 237 (402)
T KOG3865|consen 207 YHGEPISVNVHVTNNSNKTVKKIKISVRQVA 237 (402)
T ss_pred ecCCceeEEEEEecCCcceeeeeEEEeEeec
Confidence 7899999999999999999999887765433
No 22
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=56.84 E-value=23 Score=34.48 Aligned_cols=61 Identities=13% Similarity=0.067 Sum_probs=42.2
Q ss_pred eeEeCCcEEEEEEEEeCCCCceecEEEEEec-CCCC--C-eeEEE-EcceeeeeccCCceeeeeeE
Q 015529 338 VVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQ-NDSD--E-EKVVM-INGLRIMVTQFGWLIETIFM 398 (405)
Q Consensus 338 ~v~v~~PF~~~~~v~N~s~r~m~~l~l~v~~-~~~~--~-~~~~~-~~~~~lg~l~p~~~~~~~~~ 398 (405)
.+.+|+.|...+.+.|.++..+..+.|.++= ...+ . .+... ....+...|+|+.++|.|.-
T Consensus 9 ~iylGEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~L~~~~~~~~~~~~L~p~~~l~~iv~ 74 (249)
T PF06159_consen 9 SIYLGETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQSLRLPLSDNENSDSPVASLAPGESLDFIVS 74 (249)
T ss_pred CEeecCCEEEEEEeecCCCCceEEeEEEEEEeCCCCCccccCCCCccccccccccCCCCeEeEEEE
Confidence 5789999999999999999998766666542 2222 1 11111 22235678999999998864
No 23
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=55.27 E-value=54 Score=27.61 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=54.0
Q ss_pred ceeeccceEEEEEEecCCCcceeeEEEEEEEeCCCceeecc-CC--CCCCccccCCCCeeeEEEEEec-cccCceEEEEE
Q 015529 96 AIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLL-DT--SKSPVESIRAGGRYDFIVEHDV-KELGAHTLVCT 171 (405)
Q Consensus 96 ~iylGETFs~yisv~N~s~~~v~~V~ikaelQT~s~r~~L~-~~--~~~~~~~L~pg~~ld~iv~hel-KE~G~HiLvc~ 171 (405)
.+..||++.-.+.+.. ..++.++.+-..+.+........ ++ ...+....+ ++.....++.+. =-.|.|.+.+.
T Consensus 30 ~~~~ge~~~i~i~~~~--~~~i~~~~~~~~i~~~~g~~v~~~~t~~~~~~~~~~~-~g~~~~~~~i~~~L~~G~Y~i~v~ 106 (142)
T PF14524_consen 30 SFESGEPIRIRIDYEV--NEDIDDPVFGFAIRDSDGQRVFGTNTYDSGFPIPLSE-GGTYEVTFTIPKPLNPGEYSISVG 106 (142)
T ss_dssp SEETTSEEEEEEEEEE--SS-EEEEEEEEEEEETT--EEEEEEHHHHT--EEE-T-T-EEEEEEEEE--B-SEEEEEEEE
T ss_pred EEeCCCEEEEEEEEEE--CCCCCccEEEEEEEcCCCCEEEEECccccCccccccC-CCEEEEEEEEcCccCCCeEEEEEE
Confidence 3788999998888887 67788888888888887533221 11 011222232 554444444444 44599999999
Q ss_pred EEEEcCCCcccc--cceeeeEEeeC
Q 015529 172 ALYSDGEGERKY--LPQFFKFIVSN 194 (405)
Q Consensus 172 V~Y~~~~Ge~~~--frK~fkF~v~~ 194 (405)
+.+ ...+.... ..+.+.|.|..
T Consensus 107 l~~-~~~~~~~~d~~~~~~~f~V~~ 130 (142)
T PF14524_consen 107 LGD-DSSGGEVLDWIEDALSFEVED 130 (142)
T ss_dssp EEE-TTTEEEEEEEEEEEEEEEEE-
T ss_pred EEe-cCCCCEEEEEECCEEEEEEEC
Confidence 944 33333232 34677887776
No 24
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=52.73 E-value=30 Score=24.44 Aligned_cols=34 Identities=26% Similarity=0.252 Sum_probs=28.2
Q ss_pred eccccCceEEEEEEEEEcCCCcccccceeeeEEe
Q 015529 159 DVKELGAHTLVCTALYSDGEGERKYLPQFFKFIV 192 (405)
Q Consensus 159 elKE~G~HiLvc~V~Y~~~~Ge~~~frK~fkF~v 192 (405)
-..++|.|.|...+.-+..+|+..+=..-|.|.|
T Consensus 8 ~FT~PG~Y~l~~~a~~~~~~G~~~s~~~t~tf~V 41 (41)
T TIGR03769 8 VFTKPGTYTLTVQATATLTDGKVSSDPQTLTFAV 41 (41)
T ss_pred eeCCCeEEEEEEEEEEEeCCCcEecCCEEEEEEC
Confidence 4578999999999998888898777777788765
No 25
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=51.34 E-value=24 Score=27.36 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=28.1
Q ss_pred ccceeeccceEEEEEEecCCCcceeeEEEEEEE
Q 015529 94 FGAIYLGETFCSYISINNSSTLEVRDVVIKAEI 126 (405)
Q Consensus 94 FG~iylGETFs~yisv~N~s~~~v~~V~ikael 126 (405)
-..++.||++.-.|.+.|..+....+|.|.=.|
T Consensus 34 ~~~~~~Gd~v~ytitvtN~G~~~a~nv~v~D~l 66 (76)
T PF01345_consen 34 PSTANPGDTVTYTITVTNTGPAPATNVVVTDTL 66 (76)
T ss_pred CCcccCCCEEEEEEEEEECCCCeeEeEEEEEcC
Confidence 345799999999999999999999999876433
No 26
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=50.47 E-value=60 Score=26.31 Aligned_cols=54 Identities=15% Similarity=0.023 Sum_probs=38.0
Q ss_pred eeEeCCcEEEEEEEEeCCCCceecEEEEEecCCCCCeeEEEEcceeeeeccCCceeeee
Q 015529 338 VVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMVTQFGWLIETI 396 (405)
Q Consensus 338 ~v~v~~PF~~~~~v~N~s~r~m~~l~l~v~~~~~~~~~~~~~~~~~lg~l~p~~~~~~~ 396 (405)
.+.+++.....+.|+|.+..... +.++.... .....-+- ..-|.|+||.+.+.-
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p~~-f~v~~~~~-~~~~~~v~---~~~g~l~PG~~~~~~ 68 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIPAR-FRVRQPES-LSSFFSVE---PPSGFLAPGESVELE 68 (102)
T ss_pred EEccCCEEEEEEEEEECCCCCEE-EEEEeCCc-CCCCEEEE---CCCCEECCCCEEEEE
Confidence 56789999999999999999886 77765442 22222222 245889999987653
No 27
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=49.98 E-value=73 Score=32.54 Aligned_cols=78 Identities=14% Similarity=0.159 Sum_probs=54.3
Q ss_pred CcCCCeEEEEEecCceeEeCCcEEEEEEEEeCCCCceecEEEEEecCCCCC-eeE-EE-------Ecceeee-eccCCce
Q 015529 323 ITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDE-EKV-VM-------INGLRIM-VTQFGWL 392 (405)
Q Consensus 323 ~~~~dl~l~v~~~P~~v~v~~PF~~~~~v~N~s~r~m~~l~l~v~~~~~~~-~~~-~~-------~~~~~lg-~l~p~~~ 392 (405)
...+.|.|.+.=--+.+.=|+|..+++.|+|+|++++.-+.+.|++- ++ -+| ++ +---.-| .+.||++
T Consensus 190 mS~~~lhLevsLDkEiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~--adi~Lfs~aqy~~~VA~~E~~eGc~v~Pgst 267 (402)
T KOG3865|consen 190 MSDGPLHLEVSLDKEIYYHGEPISVNVHVTNNSNKTVKKIKISVRQV--ADICLFSTAQYKKPVAMEETDEGCPVAPGST 267 (402)
T ss_pred cCCCceEEEEEecchheecCCceeEEEEEecCCcceeeeeEEEeEee--ceEEEEecccccceeeeeecccCCccCCCCe
Confidence 34666777764444577889999999999999999999888988886 44 222 11 1111111 4789999
Q ss_pred eeeeeEEEEe
Q 015529 393 IETIFMWISL 402 (405)
Q Consensus 393 ~~~~~~~~~~ 402 (405)
+.-+|..+-|
T Consensus 268 l~Kvf~l~Pl 277 (402)
T KOG3865|consen 268 LSKVFTLTPL 277 (402)
T ss_pred eeeeEEechh
Confidence 9888876543
No 28
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=49.90 E-value=1.5e+02 Score=26.19 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=37.4
Q ss_pred CceeEeCCcEEEEEEEEeC-----------CCCceecEEEEEecCCCCCeeEEEEcceeeeeccCCceeeeeeEEEEe
Q 015529 336 PSVVGIDKPFLLKLKLTNQ-----------TDKEQGPFEIWLSQNDSDEEKVVMINGLRIMVTQFGWLIETIFMWISL 402 (405)
Q Consensus 336 P~~v~v~~PF~~~~~v~N~-----------s~r~m~~l~l~v~~~~~~~~~~~~~~~~~lg~l~p~~~~~~~~~~~~~ 402 (405)
+....+|+|..++++|+|. .++... +...|..+ .+.|+.+|...--. .+..++..+.=++.|-|
T Consensus 24 ~~~~~vGqpi~~~l~I~~~~~W~~~~~~~~~~~~~~-~~yei~a~-~~~WlV~Grrrg~f-~~~~~~~~~~~l~LIPL 98 (147)
T PF12584_consen 24 PPPCRVGQPIPAELRIKNSRKWSSEDQEESSNEDTE-FMYEIVAD-SDNWLVSGRRRGVF-SLSDGSEHEIPLTLIPL 98 (147)
T ss_pred CcceEeCCeEEEEEEEEEcccCCccccccccCCCcc-EEEEEecC-CCcEEEeccCcceE-EecCCCeEEEEEEEEec
Confidence 4567999999999999995 233333 55555222 23477777543211 12566666655555543
No 29
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=49.41 E-value=59 Score=25.11 Aligned_cols=47 Identities=11% Similarity=0.184 Sum_probs=37.2
Q ss_pred ccCcCCCeEEEEEecCceeEeCCcEEEEEEEEeCCCCceecEEEEEecC
Q 015529 321 TTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQN 369 (405)
Q Consensus 321 ~~~~~~dl~l~v~~~P~~v~v~~PF~~~~~v~N~s~r~m~~l~l~v~~~ 369 (405)
......++.+....-+..+.+|+.+++++.++|........ +.|...
T Consensus 19 ~~~~~~~~~~~k~~~~~~~~~Gd~v~ytitvtN~G~~~a~n--v~v~D~ 65 (76)
T PF01345_consen 19 TVVAIPDLSITKTVNPSTANPGDTVTYTITVTNTGPAPATN--VVVTDT 65 (76)
T ss_pred eccCCCCEEEEEecCCCcccCCCEEEEEEEEEECCCCeeEe--EEEEEc
Confidence 45566788888777899999999999999999998877643 555444
No 30
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=48.97 E-value=3.2e+02 Score=32.73 Aligned_cols=46 Identities=7% Similarity=0.041 Sum_probs=37.8
Q ss_pred cCcCCCeEEEEEecCc---eeEeCCcEEEEEEEEeCCCCceecEEEEEe
Q 015529 322 TITSKEIELNVVEVPS---VVGIDKPFLLKLKLTNQTDKEQGPFEIWLS 367 (405)
Q Consensus 322 ~~~~~dl~l~v~~~P~---~v~v~~PF~~~~~v~N~s~r~m~~l~l~v~ 367 (405)
.|..+.|++...++++ .+.-|+-.+|++.++|.|..+++-+.+...
T Consensus 775 Ip~qP~L~v~~~sl~~~~~mlleGE~~~~~ItL~N~S~~pvd~l~~sf~ 823 (1185)
T PF08626_consen 775 IPPQPLLEVKSSSLTQGALMLLEGEKQTFTITLRNTSSVPVDFLSFSFQ 823 (1185)
T ss_pred ECCCCeEEEEeccCCCcceEEECCcEEEEEEEEEECCccccceEEEEEE
Confidence 4677888887775543 667899999999999999999987888776
No 31
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=47.17 E-value=1.3e+02 Score=26.48 Aligned_cols=73 Identities=15% Similarity=0.253 Sum_probs=46.1
Q ss_pred eccceEEEEEEecCCCcceeeEEEEEEEeCCCcee-e--c---cCCC-----CCCcc-ccCCCCeeeEEEEEecc-ccCc
Q 015529 99 LGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRI-L--L---LDTS-----KSPVE-SIRAGGRYDFIVEHDVK-ELGA 165 (405)
Q Consensus 99 lGETFs~yisv~N~s~~~v~~V~ikaelQT~s~r~-~--L---~~~~-----~~~~~-~L~pg~~ld~iv~helK-E~G~ 165 (405)
.+|.|.--..|.|.+..+++++.+.+++....+.. . . .... ..++. .|.||++.++-+..+=- ..|+
T Consensus 60 ~~~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~~p~~~~ 139 (149)
T PF09624_consen 60 YSESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPYPPYFGN 139 (149)
T ss_pred eccEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecCCccCCC
Confidence 48889899999999999999999999997643211 0 0 0000 01122 28888888876665522 2244
Q ss_pred eEEEEE
Q 015529 166 HTLVCT 171 (405)
Q Consensus 166 HiLvc~ 171 (405)
+.+..+
T Consensus 140 ~~~~~~ 145 (149)
T PF09624_consen 140 YNIRVK 145 (149)
T ss_pred ceEEEE
Confidence 444443
No 32
>COG2847 Copper(I)-binding protein [Inorganic ion transport and metabolism]
Probab=47.12 E-value=1.5e+02 Score=27.08 Aligned_cols=102 Identities=26% Similarity=0.356 Sum_probs=61.4
Q ss_pred ccccccceeeccceE-----------EEEEEecCCCcceeeEEEEEEEeCCCceeeccCCCCC---------CccccCCC
Q 015529 90 LPQAFGAIYLGETFC-----------SYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKS---------PVESIRAG 149 (405)
Q Consensus 90 LP~sFG~iylGETFs-----------~yisv~N~s~~~v~~V~ikaelQT~s~r~~L~~~~~~---------~~~~L~pg 149 (405)
+...++.|++..-+. +|+.+.|.++.+++-|.++.+. ..|+.|.+...+ +.-.|.+|
T Consensus 19 ~~~~~~~i~v~~a~~ra~~pg~~~~a~~~ti~N~~~~~~~Lv~v~s~~---a~~~ElHe~i~~~gvmkMr~v~~i~Ipa~ 95 (151)
T COG2847 19 LAVAAAAIHVEDAWARATPPGAKMGAAFMTITNNGDKDDRLVGVSSPI---AARAELHETIHDGGVMKMRKVPGIVIPAG 95 (151)
T ss_pred cccccCceEEeccEEEecCCCCcceeEEEEEeCCCCCCceEEEEecCc---cceeEEEEEEecCCeEEEEEcCcEEECCC
Confidence 344556666655443 8999999999999988887655 456666543211 23457788
Q ss_pred CeeeEEEEEeccccCceEEEEEEEEEcCCCcccccceeeeEEeeCCeEEeEEE
Q 015529 150 GRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKV 202 (405)
Q Consensus 150 ~~ld~iv~helKE~G~HiLvc~V~Y~~~~Ge~~~frK~fkF~v~~PL~VkTK~ 202 (405)
++++ +|-=|.|++.--+.=--..|+ .|..=++|..-....|+-++
T Consensus 96 ~~v~------lkpGgyHvMlm~lK~pl~eGd--~v~vtL~f~~~~~~~v~~~v 140 (151)
T COG2847 96 GTVE------LKPGGYHVMLMGLKKPLKEGD--KVPVTLKFEKAGKVTVEAPV 140 (151)
T ss_pred ceEE------ecCCCEEEEEeccCCCccCCC--EEEEEEEEecCCeEEEEEEE
Confidence 8775 788899999855422222333 23334444444444444333
No 33
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=41.60 E-value=4.5e+02 Score=27.80 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=0.0
Q ss_pred ccccccccccceeeccceEEEEEEecCCCcceeeEEEEEEEeCCCceeeccCCC-CCCccccCCCCeeeEEEEEecc---
Q 015529 86 GLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTS-KSPVESIRAGGRYDFIVEHDVK--- 161 (405)
Q Consensus 86 ~~L~LP~sFG~iylGETFs~yisv~N~s~~~v~~V~ikaelQT~s~r~~L~~~~-~~~~~~L~pg~~ld~iv~helK--- 161 (405)
+.....++-..++-||++.-.+-+-|..+..++++.+..+- ...-........ ..-+..|.||++..........
T Consensus 152 ~~~~v~~~~~~i~~G~~~~l~~~I~N~G~~~~~~v~l~~~~-~~~~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~~~~a 230 (500)
T COG1361 152 ESFEVVSSPEAIIPGETNTLTLTIKNPGEGPAKNVSLSLES-PTSYLGPIYSANDTPYIGALGPGESVNVTFSVYAGSNA 230 (500)
T ss_pred ceeEEecCccccCCCCccEEEEEEEeCCcccccceEEEEeC-CcceeccccccccceeeeeeCCCceEEEEEEEEeecCC
Q ss_pred ccCceEEEEEEEEEcCCCcccccceeeeEEeeCCeEEeEEEEEe------CCeeEEEEEEEecCCccEEEEeEEeeecCC
Q 015529 162 ELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVV------KEITFLEACIENHTKSNLYMDQVEFEPSQN 235 (405)
Q Consensus 162 E~G~HiLvc~V~Y~~~~Ge~~~frK~fkF~v~~PL~VkTK~~~~------~~~~~LEaqlqN~s~~~l~Le~v~lep~~~ 235 (405)
+.|.|.+-..++|.+.++.++.-...=-..+.....+.-..... .....+|.-+.|....+.-...+.+.....
T Consensus 231 ~~g~y~i~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~is~v~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~ 310 (500)
T COG1361 231 EPGTYTINLEITYKDEEGSVKSPTITIGIVVVGEPKLDISNVKFDPGVIPLGGVSIEITITIENSGSAPNQTVRLVTGSP 310 (500)
T ss_pred CCccEEEEEEEEEecCCccccccceEEEEecCCceeEEEEEEEecCCeeccceeEEEEEEEEEecccccceEEEEEecCC
Q ss_pred ce
Q 015529 236 WS 237 (405)
Q Consensus 236 ~~ 237 (405)
+.
T Consensus 311 ~~ 312 (500)
T COG1361 311 FT 312 (500)
T ss_pred cc
No 34
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=39.64 E-value=1.1e+02 Score=25.70 Aligned_cols=69 Identities=22% Similarity=0.140 Sum_probs=35.0
Q ss_pred CcCCCeEEEEEecCceeEeCCc-----EEEEEEEEeCCCCceecEEEEEecCCCCCeeEEEEcceeeeeccCCceeeee
Q 015529 323 ITSKEIELNVVEVPSVVGIDKP-----FLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMVTQFGWLIETI 396 (405)
Q Consensus 323 ~~~~dl~l~v~~~P~~v~v~~P-----F~~~~~v~N~s~r~m~~l~l~v~~~~~~~~~~~~~~~~~lg~l~p~~~~~~~ 396 (405)
..++++++.|...+....+... =.++++|.|.++..+. +.|.+... +++.+.+ +..--.++|+.+.+..
T Consensus 6 ~~R~~~~~~V~rdr~~ly~~~~dg~I~N~Y~lkl~Nkt~~~~~-~~i~~~g~--~~~~l~~--~~~~i~v~~g~~~~~~ 79 (118)
T PF11614_consen 6 STRKPVELNVLRDRGPLYRELSDGSIRNQYTLKLTNKTNQPRT-YTISVEGL--PGAELQG--PENTITVPPGETREVP 79 (118)
T ss_dssp ----SEEEEEEE-SS---------SEEEEEEEEEEE-SSS-EE-EEEEEES---SS-EE-E--S--EEEE-TT-EEEEE
T ss_pred EccCcEEEEEEecCCCcEEEcCCCeEEEEEEEEEEECCCCCEE-EEEEEecC--CCeEEEC--CCcceEECCCCEEEEE
Confidence 4567778888776654433222 1367899999999997 99999874 4566644 4445556777776654
No 35
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=39.50 E-value=55 Score=29.55 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=49.2
Q ss_pred CCccCCCccccccccccceeeccceEEEEEEecCCCcceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEE
Q 015529 79 ADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEH 158 (405)
Q Consensus 79 ~~~~~ls~~L~LP~sFG~iylGETFs~yisv~N~s~~~v~~V~ikaelQT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~h 158 (405)
...-||+=....+.+-- +|-.-.-+--|.+.|.+..++++|.|.-.=.....++.- ..+++.|.||+++..++.-
T Consensus 64 v~G~GL~v~Y~F~RqP~-~~s~~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~----F~~I~~L~pg~s~t~~lgI 138 (145)
T PF14796_consen 64 VNGKGLSVEYRFSRQPS-LYSPSMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHE----FPEIESLEPGASVTVSLGI 138 (145)
T ss_pred cCCCceeEEEEEccCCc-CCCCCcEEEEEEEEecCCCeecceEECCCCCCCCcEeec----cCcccccCCCCeEEEEEEE
Confidence 33444444444443211 233444456677899999999999887654333444422 3468899999999888776
Q ss_pred eccc
Q 015529 159 DVKE 162 (405)
Q Consensus 159 elKE 162 (405)
|..+
T Consensus 139 DF~D 142 (145)
T PF14796_consen 139 DFND 142 (145)
T ss_pred eccc
Confidence 6544
No 36
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=38.90 E-value=53 Score=24.15 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=26.2
Q ss_pred eeeccceEEEEEEecCCCcceeeEEEEEEE
Q 015529 97 IYLGETFCSYISINNSSTLEVRDVVIKAEI 126 (405)
Q Consensus 97 iylGETFs~yisv~N~s~~~v~~V~ikael 126 (405)
+..|+++.-.|.+.|.....+++|.|.=.|
T Consensus 8 ~~~Gd~v~Yti~v~N~g~~~a~~v~v~D~l 37 (53)
T TIGR01451 8 ATIGDTITYTITVTNNGNVPATNVVVTDIL 37 (53)
T ss_pred cCCCCEEEEEEEEEECCCCceEeEEEEEcC
Confidence 578999999999999999999998877443
No 37
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=37.87 E-value=64 Score=29.13 Aligned_cols=48 Identities=15% Similarity=0.136 Sum_probs=33.0
Q ss_pred EEEEEEEEeCCCCceecEEEEEecCCCCC-eeEEEEcceeeeeccCCceeeee
Q 015529 345 FLLKLKLTNQTDKEQGPFEIWLSQNDSDE-EKVVMINGLRIMVTQFGWLIETI 396 (405)
Q Consensus 345 F~~~~~v~N~s~r~m~~l~l~v~~~~~~~-~~~~~~~~~~lg~l~p~~~~~~~ 396 (405)
..|++.++|+|+..+. .|++.++.+.. +..-+ =-+++.|+||+++.++
T Consensus 87 vsIql~ftN~s~~~i~--~I~i~~k~l~~g~~i~~--F~~I~~L~pg~s~t~~ 135 (145)
T PF14796_consen 87 VSIQLTFTNNSDEPIK--NIHIGEKKLPAGMRIHE--FPEIESLEPGASVTVS 135 (145)
T ss_pred EEEEEEEEecCCCeec--ceEECCCCCCCCcEeec--cCcccccCCCCeEEEE
Confidence 3477899999999996 66666664322 33222 2357889999998754
No 38
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=36.75 E-value=2.2e+02 Score=22.68 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=46.5
Q ss_pred eeeccceEEEEEEecCCCccee--eEEEEEEEeCCCce-----eeccCCCCCCccccCCCCeeeEEEEEeccccCceEEE
Q 015529 97 IYLGETFCSYISINNSSTLEVR--DVVIKAEIQTDKQR-----ILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLV 169 (405)
Q Consensus 97 iylGETFs~yisv~N~s~~~v~--~V~ikaelQT~s~r-----~~L~~~~~~~~~~L~pg~~ld~iv~helKE~G~HiLv 169 (405)
..+|+....+|...+.....+. ...+.|++..++.+ +.. + +.....| ...++|-.++.|.|.|.
T Consensus 17 ~~~g~~~~F~V~~~d~~g~~~~~~~~~~~v~i~~p~~~~~~~~~~~-~-----v~~~~~G---~y~v~y~p~~~G~y~i~ 87 (101)
T PF00630_consen 17 AVVGEPATFTVDTRDAGGNPVSSGGDEFQVTITSPDGKEEPVPVPV-E-----VIDNGDG---TYTVSYTPTEPGKYKIS 87 (101)
T ss_dssp EETTSEEEEEEEETTTTSSBEESTSSEEEEEEESSSSESS--EEEE-E-----EEEESSS---EEEEEEEESSSEEEEEE
T ss_pred eECCCcEEEEEEEccCCCCccccCCceeEEEEeCCCCCccccccce-E-----EEECCCC---EEEEEEEeCccEeEEEE
Confidence 4889999999999988666543 35666777777654 222 1 1122222 46799999999999998
Q ss_pred EEE
Q 015529 170 CTA 172 (405)
Q Consensus 170 c~V 172 (405)
+.+
T Consensus 88 V~~ 90 (101)
T PF00630_consen 88 VKI 90 (101)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 39
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=35.42 E-value=1.6e+02 Score=23.80 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=30.9
Q ss_pred CCcEEEEEEEEeCCCCceecEEEEEecCCCCC-eeEEEEcceeeeeccCCceeeeeeE
Q 015529 342 DKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDE-EKVVMINGLRIMVTQFGWLIETIFM 398 (405)
Q Consensus 342 ~~PF~~~~~v~N~s~r~m~~l~l~v~~~~~~~-~~~~~~~~~~lg~l~p~~~~~~~~~ 398 (405)
++.-...+.|+|.++..+. +. |+-+ ++ ...+-++ .|.|+|+.+++....
T Consensus 17 ~~~~~~~l~l~N~s~~~i~-fK--iktt--~~~~y~v~P~---~G~i~p~~~~~i~I~ 66 (109)
T PF00635_consen 17 NKQQSCELTLTNPSDKPIA-FK--IKTT--NPNRYRVKPS---YGIIEPGESVEITIT 66 (109)
T ss_dssp SS-EEEEEEEEE-SSSEEE-EE--EEES---TTTEEEESS---EEEE-TTEEEEEEEE
T ss_pred CceEEEEEEEECCCCCcEE-EE--EEcC--CCceEEecCC---CEEECCCCEEEEEEE
Confidence 3446899999999999764 54 4444 33 3334444 699999999876543
No 40
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=32.55 E-value=1.7e+02 Score=23.52 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=28.1
Q ss_pred eEEeeCCeEEeEEEE---EeCCeeEEEEEEEecCCccEEEE
Q 015529 189 KFIVSNPLSVRTKVR---VVKEITFLEACIENHTKSNLYMD 226 (405)
Q Consensus 189 kF~v~~PL~VkTK~~---~~~~~~~LEaqlqN~s~~~l~Le 226 (405)
+|.|.+||-|+..+= ...|++.+.+.|.|.++..+-++
T Consensus 49 ~~~v~~p~~i~~~lP~~l~~GD~~~i~v~v~N~~~~~~~v~ 89 (92)
T PF00207_consen 49 EITVFKPFFIQLNLPRSLRRGDQIQIPVTVFNYTDKDQEVT 89 (92)
T ss_dssp EEEEB-SEEEEEE--SEEETTSEEEEEEEEEE-SSS-EEEE
T ss_pred EEEEEeeEEEEcCCCcEEecCCEEEEEEEEEeCCCCCEEEE
Confidence 899999999998873 44899999999999998776543
No 41
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=29.98 E-value=4.2e+02 Score=26.52 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=30.4
Q ss_pred ccccCCCCeeeEEEEEeccccCceEEEEEEEEEcCCCccccccee
Q 015529 143 VESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQF 187 (405)
Q Consensus 143 ~~~L~pg~~ld~iv~helKE~G~HiLvc~V~Y~~~~Ge~~~frK~ 187 (405)
+.-|.||+++..=++|-==..|.|.|-.-=-+--..||..-+|++
T Consensus 257 iGpL~P~~c~~~eL~fi~l~~G~~~L~~lkvvDl~t~e~~di~~l 301 (306)
T PF12735_consen 257 IGPLAPGACYSVELRFIALSPGVHNLEGLKVVDLNTNEHVDIGDL 301 (306)
T ss_pred ccccCCCceEEEEEEEEEeccceEeecceEEEECCCCceEEeCCC
Confidence 456889999998888888888999774322233345665555543
No 42
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=28.40 E-value=58 Score=27.33 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=21.9
Q ss_pred EEEEecCceeEeCCcEEEEEEEEeC
Q 015529 330 LNVVEVPSVVGIDKPFLLKLKLTNQ 354 (405)
Q Consensus 330 l~v~~~P~~v~v~~PF~~~~~v~N~ 354 (405)
+.+...|+.+..++.|+++|.+.|-
T Consensus 4 V~l~~~p~~~~eG~~~tL~C~v~g~ 28 (100)
T cd05755 4 VELSPLPSWQPVGKNYTLQCDVPGV 28 (100)
T ss_pred EEEecCCCcccCCCcEEEEEEEcCc
Confidence 4566789999999999999999995
No 43
>PF08752 COP-gamma_platf: Coatomer gamma subunit appendage platform subdomain; InterPro: IPR014863 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal appendage domain of the gamma subunit of coatomer complexes. The appendage domain of the gamma coatomer subunit has a similar overall structural fold to the appendage domain of clathrin adaptors, and can also share the same motif-based cargo recognition and accessory factor recruitment mechanisms. The coatomer gamma subunit appendage domain contains a protein-protein interaction site and a second proposed binding site that interacts with the alpha, beta, epsilon COPI subcomplex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0005798 Golgi-associated vesicle; PDB: 1PZD_A 1R4X_A.
Probab=28.06 E-value=1.8e+02 Score=26.40 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=33.8
Q ss_pred EEEEEEEEeC-CCCceecEEEEEecCCCCCeeEEEEcceeeeeccCCceeee
Q 015529 345 FLLKLKLTNQ-TDKEQGPFEIWLSQNDSDEEKVVMINGLRIMVTQFGWLIET 395 (405)
Q Consensus 345 F~~~~~v~N~-s~r~m~~l~l~v~~~~~~~~~~~~~~~~~lg~l~p~~~~~~ 395 (405)
.-+.+.++|. .|+.+.++.|.+.+.+.. |.-..-+++..|+++.+-.+
T Consensus 50 iVlQF~v~NTL~dq~LenV~V~~~~~~~~---~~~~~~ipi~~L~~~~~~~~ 98 (151)
T PF08752_consen 50 IVLQFNVTNTLNDQVLENVSVVLEPSEEE---FEEVFIIPIPSLPYNEPGSC 98 (151)
T ss_dssp EEEEEEEEE--TTEEEEEEEEEEEESSS-----EEEEEE-EEEE-CT--EEE
T ss_pred EEEEEEEeeccCceeeeeEEEEEecCCce---EEEEEEEEhhhCCCCCCeeE
Confidence 3467888997 899999999999988443 88888899999999876554
No 44
>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=27.93 E-value=1.6e+02 Score=24.32 Aligned_cols=42 Identities=17% Similarity=0.335 Sum_probs=30.3
Q ss_pred CeEEEEEecCc-eeEeCCcEEEEEEEEeCCCCceecEEEEEecC
Q 015529 327 EIELNVVEVPS-VVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQN 369 (405)
Q Consensus 327 dl~l~v~~~P~-~v~v~~PF~~~~~v~N~s~r~m~~l~l~v~~~ 369 (405)
.+.+.+ .+|. .+..|+...+.+.|.|.+.+.+..+.+.+...
T Consensus 4 ~i~~~~-~i~~~~~~~Ge~i~v~v~i~n~s~~~i~~I~v~L~~~ 46 (136)
T PF02752_consen 4 KISLSI-SIPRTAYVPGETIPVNVEIDNQSKKKIKKIKVSLVER 46 (136)
T ss_dssp EEEEEE-EES-SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEE
T ss_pred EEEEEE-EECCCEECCCCEEEEEEEEEECCCCEEEEEEEEEEEE
Confidence 345554 5665 77899999999999999999998888888654
No 45
>PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes part of the Sec23/24 beta-barrel domain, which is formed from approximately 180 residues from three segments of the polypeptide. The strands of the barrel are oriented roughly parallel to the membrane such that one end of the barrel forms part of the inner surface of the coat and the other end part of the membrane-distal surface. The barrel is constructed from two opposed sheets: a six-stranded beta sheet facing partly towards the zinc finger domain and partly towards the solvent, and a five-stranded beta sheet facing the helical domain.; PDB: 3EFO_B 3EG9_B 1PD0_A 1PD1_A 1M2V_B 1PCX_A 3EH2_C 3EGD_A 2NUP_A 3EGX_A ....
Probab=27.51 E-value=1e+02 Score=25.07 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=25.3
Q ss_pred cccCCCCeeeEEEEEe--ccccCceEEEEEEEEEcCCCccc
Q 015529 144 ESIRAGGRYDFIVEHD--VKELGAHTLVCTALYSDGEGERK 182 (405)
Q Consensus 144 ~~L~pg~~ld~iv~he--lKE~G~HiLvc~V~Y~~~~Ge~~ 182 (405)
+.+.++.++.+.++++ +++...-.+-+++.|++.+|+++
T Consensus 45 ~~l~~~~s~~~~~~~~~~~~~~~~~~iQ~~~~Yt~~~G~r~ 85 (96)
T PF08033_consen 45 PSLDPDTSFAFEFEIDEDLPNGSQAYIQFALLYTDSNGERR 85 (96)
T ss_dssp EEEETT--EEEEEEESSBTBTTSEEEEEEEEEEEETTSEEE
T ss_pred cccCCCCEEEEEEEECCCCCCCCeEEEEEEEEEECCCCCEE
Confidence 4566777777777665 33334456778889999999843
No 46
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=27.13 E-value=2.9e+02 Score=28.80 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=49.4
Q ss_pred EEEEecCCCcceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEeccccC-ceEEEEE--EEEEcCCCccc
Q 015529 106 YISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELG-AHTLVCT--ALYSDGEGERK 182 (405)
Q Consensus 106 yisv~N~s~~~v~~V~ikaelQT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~helKE~G-~HiLvc~--V~Y~~~~Ge~~ 182 (405)
.+.+.=.+...+++|.+.+..+.| +.... ..--...+.+|.+-.+.+.+-+++.. .+.+.|. ++|+++.|..|
T Consensus 2 ~v~v~~~~~~~~~~v~v~v~~~~P---l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~pssl~v~v~asy~~~~G~~r 77 (377)
T PF14728_consen 2 TVKVTLKSRSTLENVQVSVVVDPP---LACSQ-DTFVFENISPGSSQTVEISFYVSGSLPPSSLEVTVVASYTTPTGIPR 77 (377)
T ss_pred eEEEEEecceeeEeeEEEEEeCCC---EeecC-CeEEEEecCCCCcEEEEEEEEeCCCcCCccceEEEEEEEECCCccce
Confidence 444554556677888888777776 11111 01113567788777777777776543 3555544 58999989877
Q ss_pred ccceeeeE
Q 015529 183 YLPQFFKF 190 (405)
Q Consensus 183 ~frK~fkF 190 (405)
...+-++.
T Consensus 78 v~~~~~~L 85 (377)
T PF14728_consen 78 VVQCTFDL 85 (377)
T ss_pred eeEEEEEe
Confidence 66655443
No 47
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=26.69 E-value=1.1e+02 Score=22.37 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=27.9
Q ss_pred CceeEeCCcEEEEEEEEeCCCCceecEEEEEecCCCCCeeEEE
Q 015529 336 PSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVM 378 (405)
Q Consensus 336 P~~v~v~~PF~~~~~v~N~s~r~m~~l~l~v~~~~~~~~~~~~ 378 (405)
+..+.++..+++++.++|..+.....+. |....-+.+.|..
T Consensus 5 ~~~~~~Gd~v~Yti~v~N~g~~~a~~v~--v~D~lP~g~~~v~ 45 (53)
T TIGR01451 5 KTVATIGDTITYTITVTNNGNVPATNVV--VTDILPSGTTFVS 45 (53)
T ss_pred ccccCCCCEEEEEEEEEECCCCceEeEE--EEEcCCCCCEEEe
Confidence 4577899999999999999887765444 4433222255543
No 48
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=26.18 E-value=1.8e+02 Score=23.05 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=33.5
Q ss_pred ccceE-EEEEEecCCCcceeeEEEEEEEeCCCceeeccCCC------CCCccccCCCCeeeEE
Q 015529 100 GETFC-SYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTS------KSPVESIRAGGRYDFI 155 (405)
Q Consensus 100 GETFs-~yisv~N~s~~~v~~V~ikaelQT~s~r~~L~~~~------~~~~~~L~pg~~ld~i 155 (405)
|.+|. --+.+.|.++.+|+++.|.++ ....+-..|.... ++=...|+||+++.|-
T Consensus 15 g~~y~qy~v~I~N~~~~~I~~~~i~~~-~l~~~iW~l~~~~~~~y~lPs~~~~i~pg~s~~FG 76 (80)
T PF09478_consen 15 GQTYTQYDVTITNNGSKPIKSLKISID-NLYGSIWGLDKVSGNTYTLPSYQPTIKPGQSFTFG 76 (80)
T ss_pred CEEEEEEEEEEEECCCCeEEEEEEEEC-ccchhheeEEeccCCEEECCccccccCCCCEEEEE
Confidence 33443 335578999999999999998 4333322221100 1113478999988764
No 49
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=24.89 E-value=2e+02 Score=25.35 Aligned_cols=26 Identities=31% Similarity=0.627 Sum_probs=22.1
Q ss_pred eEEEEEEEecCC-ccEEEEeEEeeecC
Q 015529 209 TFLEACIENHTK-SNLYMDQVEFEPSQ 234 (405)
Q Consensus 209 ~~LEaqlqN~s~-~~l~Le~v~lep~~ 234 (405)
..+.+.++|.+. ..++|++++|-|.+
T Consensus 117 ~~~~i~i~~~~~~~~v~IDkIEFIPv~ 143 (143)
T PF03944_consen 117 ITITISIQNISSNGNVYIDKIEFIPVN 143 (143)
T ss_dssp EEEEEEEESSTTTS-EEEEEEEEEECT
T ss_pred eEEEEEEEecCCCCeEEEEeEEEEeCC
Confidence 678889999988 99999999999863
No 50
>PF01880 Desulfoferrodox: Desulfoferrodoxin; InterPro: IPR002742 Desulfoferrodoxins contains two types of iron: an Fe-S4 site very similar to that found in desulfoferrodoxin from Desulfovibrio gigas, and an octahedral coordinated high-spin ferrous site most probably with nitrogen/oxygen-containing ligands. Due to this rather unusual combination of active centres, this novel protein is named desulfoferrodoxin []. This domain comprises essentially the full length of neelaredoxin (O50258 from SWISSPROT, []), a monomeric, blue, non-haem iron protein of D. gigas said to bind two iron atoms per monomer with identical spectral properties. Neelaredoxin was shown recently to have significant superoxide dismutase activity []. This domain is also found (in a form in which the distance between the motifs H[HWYF]IXW and CN[IL]HGXW is somewhat shorter) as the C-terminal domain of desulfoferrodoxin, which is said to bind a single ferrous iron atom. The N-terminal domain of desulfoferrodoxin is described by IPR004462 from INTERPRO.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1Y07_D 1DFX_A 3QZB_A 2AMU_A ....
Probab=24.44 E-value=2.5e+02 Score=23.32 Aligned_cols=61 Identities=21% Similarity=0.279 Sum_probs=39.9
Q ss_pred EEEecCceeEeCCcEEEEEEEEeCCCCceec--EEEEEecCCCCCeeEEEEcceeeeeccCCceeeeeeEE
Q 015529 331 NVVEVPSVVGIDKPFLLKLKLTNQTDKEQGP--FEIWLSQNDSDEEKVVMINGLRIMVTQFGWLIETIFMW 399 (405)
Q Consensus 331 ~v~~~P~~v~v~~PF~~~~~v~N~s~r~m~~--l~l~v~~~~~~~~~~~~~~~~~lg~l~p~~~~~~~~~~ 399 (405)
-+.++|+.+.-+++|.++++|-. ...+|.+ ..-++ .++++-.+++.-.|.|+..-+|.|-.
T Consensus 11 PvIe~~~~~~~ge~~~V~V~VG~-~~HPm~~~HyI~wI-------~l~~~~~~v~~~~l~p~~~p~a~F~~ 73 (96)
T PF01880_consen 11 PVIEIPDKVKNGEPFEVTVKVGS-VPHPMTEEHYIEWI-------ELYTGDGGVQRKELKPGDEPEATFTV 73 (96)
T ss_dssp EEEE--SEECTTTEEEEEEEETT-TT--BSTTSBEEEE-------EEEEEETCECEEEE-TCSESEEEEEE
T ss_pred cEEEEeeccCccceEEEEEEECC-ccCCCCCCceEEEE-------EEEEcCCceEEEEcCCCCCcEEEEEE
Confidence 35678888889999999999877 6777752 11222 45555677888889999887777653
No 51
>cd03172 SORL_classII Superoxide reductase-like (SORL) domain, class II; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers.
Probab=23.98 E-value=72 Score=26.92 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=24.9
Q ss_pred EEEecCceeEeCCcEEEEEEEEeCCCCcee
Q 015529 331 NVVEVPSVVGIDKPFLLKLKLTNQTDKEQG 360 (405)
Q Consensus 331 ~v~~~P~~v~v~~PF~~~~~v~N~s~r~m~ 360 (405)
-+.++|+.++.+++|.+++.|-+-.+.+|.
T Consensus 10 Pvi~~p~~~k~ge~~~V~V~vG~~v~HPM~ 39 (104)
T cd03172 10 PVIECPEAVKAGEPFEVTVSVGKEIPHPNT 39 (104)
T ss_pred cEEEeCCcccCCCcEEEEEEECCcccCCCC
Confidence 356789999999999999999885566665
No 52
>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=23.91 E-value=1.2e+02 Score=25.04 Aligned_cols=29 Identities=21% Similarity=0.309 Sum_probs=22.7
Q ss_pred eeeccceEEEEEEecCCCcceeeEEEEEE
Q 015529 97 IYLGETFCSYISINNSSTLEVRDVVIKAE 125 (405)
Q Consensus 97 iylGETFs~yisv~N~s~~~v~~V~ikae 125 (405)
.+.||+..-.+.+.|.+...|+.+.++..
T Consensus 16 ~~~Ge~i~v~v~i~n~s~~~i~~I~v~L~ 44 (136)
T PF02752_consen 16 YVPGETIPVNVEIDNQSKKKIKKIKVSLV 44 (136)
T ss_dssp EETT--EEEEEEEEE-SSSEEEEEEEEEE
T ss_pred ECCCCEEEEEEEEEECCCCEEEEEEEEEE
Confidence 56799999999999999999999977763
No 53
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=23.67 E-value=2.5e+02 Score=23.57 Aligned_cols=62 Identities=23% Similarity=0.275 Sum_probs=37.5
Q ss_pred ceEEEEEEecCCCcceeeEEEEEEEeCCCceeeccCCCC---------CCccccCCCCeeeEEEEEeccccCceEEEEEE
Q 015529 102 TFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSK---------SPVESIRAGGRYDFIVEHDVKELGAHTLVCTA 172 (405)
Q Consensus 102 TFs~yisv~N~s~~~v~~V~ikaelQT~s~r~~L~~~~~---------~~~~~L~pg~~ld~iv~helKE~G~HiLvc~V 172 (405)
.=..|+.+.|.++.+++-+.++.+ ...++.|+.... -+.-.|.||+++.+ +--|.|++..-+
T Consensus 15 ~~a~y~ti~N~g~~~~~L~~v~s~---~a~~v~lh~~~~~~g~~~m~~v~~i~ipa~~~v~l------~pgg~HlmL~g~ 85 (110)
T PF04314_consen 15 VTAAYFTITNNGDQDDRLVGVSSP---AAARVELHETVMEDGVMKMRPVDSIPIPAGSTVEL------KPGGYHLMLMGL 85 (110)
T ss_dssp EEEEEEEEE-CSSSEEEEEEEE-T---TCCEEEEEEECCCCCEEEECCSS-EEEETT-EEEE-------CCCCEEEEECE
T ss_pred cEEEEEEEEeCCCCCeEEEEEEcC---CCceEEEEEEEccCCeEEEEECCCEEECCCCeEEe------cCCCEEEEEeCC
Confidence 446899999999999988888765 233444433111 11245778887764 666888887654
No 54
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=20.39 E-value=2.3e+02 Score=23.19 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=27.0
Q ss_pred eeEeCCcEEEEEEEEeCCC---CceecEEEEEecCCCCCeeEEEEccee
Q 015529 338 VVGIDKPFLLKLKLTNQTD---KEQGPFEIWLSQNDSDEEKVVMINGLR 383 (405)
Q Consensus 338 ~v~v~~PF~~~~~v~N~s~---r~m~~l~l~v~~~~~~~~~~~~~~~~~ 383 (405)
.|.+|.+|++.|.+.|... ..-. +.=++..+..+...|..++..-
T Consensus 14 vv~lGS~vtasC~l~~~c~~~~~a~~-I~Wkln~~~iP~~qy~~in~~~ 61 (89)
T PF06328_consen 14 VVSLGSNVTASCVLKQNCSHSVNASQ-IVWKLNGEKIPGSQYRVINDTV 61 (89)
T ss_dssp EEETTS-EEEEEEE-CCCHCT-STTC-EEEECSSCESTCGCEEEESTTE
T ss_pred EEeCCCCEEEEEEEECCCCCCcccce-EEEEECCEECChhHcceeCCeE
Confidence 7899999999999998633 2221 4444544444446666665544
Done!