Query 015530
Match_columns 405
No_of_seqs 104 out of 118
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:13:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xmk_A Double-stranded RNA-spe 72.4 6 0.0002 31.3 5.3 57 332-399 8-64 (79)
2 2rkh_A Putative APHA-like tran 61.6 6.4 0.00022 35.5 3.9 53 341-394 14-68 (180)
3 1qbj_A Protein (double-strande 38.7 54 0.0018 25.6 5.4 50 334-394 9-61 (81)
4 1yg2_A Gene activator APHA; vi 29.4 34 0.0012 29.9 3.1 47 348-395 12-58 (179)
5 3tqn_A Transcriptional regulat 29.0 37 0.0013 27.4 3.1 31 364-395 38-68 (113)
6 1t6s_A Conserved hypothetical 28.8 71 0.0024 28.3 5.1 70 319-400 75-148 (162)
7 1ztd_A Hypothetical protein PF 28.8 37 0.0013 28.9 3.0 34 333-372 69-102 (133)
8 1jgs_A Multiple antibiotic res 24.8 2E+02 0.0068 22.6 6.8 43 345-396 42-84 (138)
9 1xee_A Chemotaxis-inhibiting p 24.0 1E+02 0.0036 24.1 4.6 44 180-232 8-51 (91)
10 2qww_A Transcriptional regulat 23.7 2.6E+02 0.009 22.4 7.5 39 345-392 49-87 (154)
11 1lj9_A Transcriptional regulat 22.6 2.7E+02 0.0091 22.0 7.3 43 345-396 37-79 (144)
12 3neu_A LIN1836 protein; struct 22.0 59 0.002 26.8 3.1 32 363-395 41-72 (125)
13 3bpv_A Transcriptional regulat 21.0 2.7E+02 0.0091 21.7 6.9 42 345-395 37-78 (138)
14 2esh_A Conserved hypothetical 21.0 1.1E+02 0.0037 24.7 4.5 43 348-395 23-70 (118)
15 3k2z_A LEXA repressor; winged 20.5 1.5E+02 0.0051 25.9 5.6 52 332-394 6-58 (196)
16 1sd4_A Penicillinase repressor 20.4 64 0.0022 25.6 2.9 48 343-395 16-63 (126)
17 3g3z_A NMB1585, transcriptiona 20.2 3.3E+02 0.011 21.6 7.5 42 346-396 40-81 (145)
No 1
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=72.44 E-value=6 Score=31.26 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=43.1
Q ss_pred HhhHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCceecccCCCCC
Q 015530 332 IQQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVRLPGVP 399 (405)
Q Consensus 332 eeQe~KEaiLAY~~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~~LgLv~~~~~~~~~ 399 (405)
...+.+|.||.| |.++|+.|..+|.+. +|..-.=.|...|.+|++.|+|...+ .|.|
T Consensus 8 ~~~~~~~~IL~~--Lk~~g~~ta~eiA~~--------Lgit~~~aVr~hL~~Le~eGlV~~~~-~gRP 64 (79)
T 1xmk_A 8 DMAEIKEKICDY--LFNVSDSSALNLAKN--------IGLTKARDINAVLIDMERQGDVYRQG-TTPP 64 (79)
T ss_dssp HHHHHHHHHHHH--HHHTCCEEHHHHHHH--------HCGGGHHHHHHHHHHHHHTTSEEEEC-SSSC
T ss_pred cchhHHHHHHHH--HHHcCCcCHHHHHHH--------cCCCcHHHHHHHHHHHHHCCCEEecC-CCCC
Confidence 346789999955 878999998887654 45554337889999999999998654 3555
No 2
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum}
Probab=61.59 E-value=6.4 Score=35.52 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=41.2
Q ss_pred HHHHHH--hcCCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCceeccc
Q 015530 341 ISFFIL--MEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVR 394 (405)
Q Consensus 341 LAY~~L--l~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~~LgLv~~~~ 394 (405)
++|++| +..+|.+.=|+...|++|.+..+|- +-.-..-|+++|++-|+|+...
T Consensus 14 ~~l~VLGlL~e~p~h~Yei~~~i~~~~~~s~gS-iY~~~~~~l~~Le~~GlI~~~~ 68 (180)
T 2rkh_A 14 VRLCALGTIASQPMRYSELAGSVRHFTSRIMGP-SLELMGISIELLRYEGLVEAVD 68 (180)
T ss_dssp HHHHHHHHHHHSCEEHHHHHHHHHHHHHHHHSC-CGGGTTCCTHHHHHTTSEECCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhccCCCC-CchhHHHHHHHHHHCCCeeeee
Confidence 566666 5789999999999999999998984 2222222999999999996555
No 3
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=38.66 E-value=54 Score=25.57 Aligned_cols=50 Identities=24% Similarity=0.415 Sum_probs=35.4
Q ss_pred hHhhHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCceeccc
Q 015530 334 QEVKEVIISFFILMEQG---KATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVR 394 (405)
Q Consensus 334 Qe~KEaiLAY~~Ll~~g---~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~~LgLv~~~~ 394 (405)
++..+.||. +|...| ++|..+|. +++|+.-. .|..+|.+|++.|+|...+
T Consensus 9 ~~~~~~IL~--~L~~~~pg~~~t~~eLA--------~~Lgvsr~-tV~~~L~~Le~~G~I~~~g 61 (81)
T 1qbj_A 9 QDQEQRILK--FLEELGEGKATTAHDLS--------GKLGTPKK-EINRVLYSLAKKGKLQKEA 61 (81)
T ss_dssp HHHHHHHHH--HHHHHCTTCCBCHHHHH--------HHHTCCHH-HHHHHHHHHHHTTSEEEES
T ss_pred hHHHHHHHH--HHHHcCCCCCcCHHHHH--------HHHCcCHH-HHHHHHHHHHHCCCEEecC
Confidence 344555663 454556 58888775 45676654 7999999999999987654
No 4
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=29.44 E-value=34 Score=29.85 Aligned_cols=47 Identities=21% Similarity=0.149 Sum_probs=34.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCceecccC
Q 015530 348 EQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVRL 395 (405)
Q Consensus 348 ~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~~LgLv~~~~~ 395 (405)
..|+++.-+|.+.+++.+...++.+- =.+-.+|++|++.|+|+....
T Consensus 12 ~~~~~~gyel~~~l~~~~~~~~~~s~-~~ly~~L~~Le~~GlI~~~~~ 58 (179)
T 1yg2_A 12 STRDATGYDITKEFSASIGYFWKASH-QQVYRELNKMGEQGLVTCVLE 58 (179)
T ss_dssp HHCCBCHHHHHHHHTTGGGGTCCCCH-HHHHHHHHHHHHTTSEEECCC
T ss_pred hcCCCCHHHHHHHHHHHhCCccCCCc-CcHHHHHHHHHHCCCeEEEee
Confidence 46899999999998876544333322 257889999999999987654
No 5
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=28.97 E-value=37 Score=27.45 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=24.8
Q ss_pred HHHHHhCCcceecHHHHHHHHHHcCceecccC
Q 015530 364 LIKEEFGESCNFDVDDAVHKLEKLGIVARVRL 395 (405)
Q Consensus 364 ~L~~~fg~~vdFdv~dAL~kL~~LgLv~~~~~ 395 (405)
-|.++||++ .-.|.+|+..|++.|+|....-
T Consensus 38 ~La~~~~vS-r~tvr~al~~L~~~Gli~~~~~ 68 (113)
T 3tqn_A 38 KISTEYQIN-PLTVSKAYQSLLDDNVIEKRRG 68 (113)
T ss_dssp HHHHHHTCC-HHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHCcC-HHHHHHHHHHHHHCCCEEEecC
Confidence 345678987 5689999999999999876553
No 6
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=28.80 E-value=71 Score=28.27 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=47.6
Q ss_pred CchhHHHHHHHHHHhhHhhHHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCceeccc---
Q 015530 319 SGKGTLLHLCDDVIQQEVKEVII-SFFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVR--- 394 (405)
Q Consensus 319 sn~GvL~~L~d~AeeQe~KEaiL-AY~~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~~LgLv~~~~--- 394 (405)
.....+..+...-.....-.+.| .+++..-++|+|..+|.+ ..|.+ +++.+++|.+.|||.+.+
T Consensus 75 ~~~~~v~~~~~~~~~~~LS~aaLEtLaiIay~qPiTR~eI~~--------irGv~----~~~~v~~L~e~glI~e~g~~~ 142 (162)
T 1t6s_A 75 EFADLVRQLLAPVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQ--------IRGAS----PDYSIDRLLARGLIEVRGRAD 142 (162)
T ss_dssp GGHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSEEHHHHHH--------HHTCC----CCSHHHHHHHTTSEEEEEECS
T ss_pred HHHHHHHHHhcccccCccCHHHHHHHHHHHHcCCcCHHHHHH--------HHCCC----HHHHHHHHHHCCCEEEccccC
Confidence 33455566655443444545555 677777789999998763 46776 889999999999997532
Q ss_pred CCCCCC
Q 015530 395 LPGVPH 400 (405)
Q Consensus 395 ~~~~~~ 400 (405)
.+|+|.
T Consensus 143 ~~GRp~ 148 (162)
T 1t6s_A 143 SPGRPL 148 (162)
T ss_dssp STTCCE
T ss_pred CCCCCe
Confidence 356664
No 7
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=28.77 E-value=37 Score=28.92 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=22.7
Q ss_pred hhHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCCc
Q 015530 333 QQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGES 372 (405)
Q Consensus 333 eQe~KEaiLAY~~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~ 372 (405)
--++.||++||+||. |.+|.+|- -+.+++.|..+
T Consensus 69 kGd~aEA~iAyAWle--G~is~eEa----veilk~nl~~d 102 (133)
T 1ztd_A 69 KGDYAEALIAKAWLM--GLISEREA----VEIIKKNLYPE 102 (133)
T ss_dssp HHHHHHHHHHHHHHT--TSSCHHHH----HHHHHTTCCGG
T ss_pred ccHHHHHHHHHHHHh--ccccHHHH----HHHHHhcCcHh
Confidence 357789999999994 77776542 23455555544
No 8
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=24.84 E-value=2e+02 Score=22.60 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=29.9
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCceecccCC
Q 015530 345 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVRLP 396 (405)
Q Consensus 345 ~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~~LgLv~~~~~~ 396 (405)
.|...|+.|..+|.+ ..|.+-. .+...+++|++.|+|.+...+
T Consensus 42 ~l~~~~~~~~~~la~--------~l~~~~~-tvs~~l~~L~~~gli~r~~~~ 84 (138)
T 1jgs_A 42 SIRCAACITPVELKK--------VLSVDLG-ALTRMLDRLVCKGWVERLPNP 84 (138)
T ss_dssp HHHHHSSBCHHHHHH--------HHTCCHH-HHHHHHHHHHHTTSEEEEECT
T ss_pred HHHhcCCCCHHHHHH--------HHCCChH-HHHHHHHHHHHCCCEEecCCc
Confidence 344567788888763 3344322 678899999999999886543
No 9
>1xee_A Chemotaxis-inhibiting protein chips; chemotaxis inhibitory protein, superantigen, C5A, immune system; NMR {Staphylococcus aureus} PDB: 2k3u_A*
Probab=24.04 E-value=1e+02 Score=24.07 Aligned_cols=44 Identities=27% Similarity=0.507 Sum_probs=34.4
Q ss_pred cchhhHHHhhhcccccccccccceEEEEEeeccccCcCCCCeEEEeeCCCCCC
Q 015530 180 LENMELSFRNLLGKVTIQEPTFDRIIVLYRQASTKSKAERGVYLKHFRNIPMA 232 (405)
Q Consensus 180 l~~~~~~~~~lf~k~~lqep~FkrVVvlyR~k~~k~k~~~~l~LK~FkdIP~a 232 (405)
+-++...++|+++|-+-.-..|+.+|++-..+ =+--.|-|.|+|
T Consensus 8 lgklderlrnylkkgtknsaqfekmviltenk---------gyytvylntpla 51 (91)
T 1xee_A 8 LGKLDERLRNYLKKGTKNSAQFEKMVILTENK---------GYYTVYLNTPLA 51 (91)
T ss_dssp HHHHHHHHHHHHHTTCSCGGGEEEEEEEESTT---------CEEEEESSSCCC
T ss_pred hHHHHHHHHHHHHhcccchhhheeeEEEecCC---------ceEEEEecCcch
Confidence 44566789999999999999999999998444 455667777776
No 10
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=23.70 E-value=2.6e+02 Score=22.37 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=28.7
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCceec
Q 015530 345 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVAR 392 (405)
Q Consensus 345 ~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~~LgLv~~ 392 (405)
.|...|++|..+|.+.+ |..-. .|...+++|++.|+|.+
T Consensus 49 ~l~~~~~~t~~eLa~~l--------~~~~~-tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 49 VIYSTPGISVADLTKRL--------IITGS-SAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHSTTEEHHHHHHHH--------TCCHH-HHHHHHHHHHHTTSEEE
T ss_pred HHHHCCCCCHHHHHHHH--------CCCHH-HHHHHHHHHHHCCCEEe
Confidence 34456778888876654 33222 68899999999999988
No 11
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=22.62 E-value=2.7e+02 Score=21.98 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=30.5
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCceecccCC
Q 015530 345 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVRLP 396 (405)
Q Consensus 345 ~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~~LgLv~~~~~~ 396 (405)
.|...|++|..+|.+.. |.+- =.|..++++|++.|+|.+...+
T Consensus 37 ~l~~~~~~t~~~la~~l--------~~s~-~~vs~~l~~Le~~gli~r~~~~ 79 (144)
T 1lj9_A 37 RVCENPGIIQEKIAELI--------KVDR-TTAARAIKRLEEQGFIYRQEDA 79 (144)
T ss_dssp HHHHSTTEEHHHHHHHH--------TCCH-HHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHCcCcCHHHHHHHH--------CCCH-hHHHHHHHHHHHCCCEEeecCC
Confidence 34456778888876543 3332 2688999999999999886543
No 12
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=21.99 E-value=59 Score=26.76 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=25.5
Q ss_pred HHHHHHhCCcceecHHHHHHHHHHcCceecccC
Q 015530 363 ELIKEEFGESCNFDVDDAVHKLEKLGIVARVRL 395 (405)
Q Consensus 363 ~~L~~~fg~~vdFdv~dAL~kL~~LgLv~~~~~ 395 (405)
+-|.++||+. .-.|.+|+..|++.|+|....-
T Consensus 41 ~~La~~~~vS-r~tvr~Al~~L~~~G~i~~~~g 72 (125)
T 3neu_A 41 REMGVKLAVN-PNTVSRAYQELERAGYIYAKRG 72 (125)
T ss_dssp HHHHHHHTCC-HHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHCcC-HHHHHHHHHHHHHCCeEEEecC
Confidence 3455678997 4789999999999999876653
No 13
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=21.05 E-value=2.7e+02 Score=21.73 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=30.4
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCceecccC
Q 015530 345 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVRL 395 (405)
Q Consensus 345 ~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~~LgLv~~~~~ 395 (405)
.|...|+.|..+|.+.+ |.+- =.|..++++|++.|+|.+...
T Consensus 37 ~l~~~~~~~~~ela~~l--------~~s~-~tvs~~l~~L~~~glv~~~~~ 78 (138)
T 3bpv_A 37 RIHREPGIKQDELATFF--------HVDK-GTIARTLRRLEESGFIEREQD 78 (138)
T ss_dssp HHHHSTTCBHHHHHHHH--------TCCH-HHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHcCCCCHHHHHHHH--------CCCH-HHHHHHHHHHHHCCCEEeecC
Confidence 34456788988887654 3332 268899999999999987543
No 14
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=21.03 E-value=1.1e+02 Score=24.74 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=32.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCC-c--cee--cHHHHHHHHHHcCceecccC
Q 015530 348 EQGKATRQDLDLRCEELIKEEFGE-S--CNF--DVDDAVHKLEKLGIVARVRL 395 (405)
Q Consensus 348 ~~g~lT~~~Ld~~~E~~L~~~fg~-~--vdF--dv~dAL~kL~~LgLv~~~~~ 395 (405)
..++.+.-+|.+.+++ .|. . ++- .+-.+|.+|++.|+|+....
T Consensus 23 ~~~~~~gyel~~~l~~-----~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~ 70 (118)
T 2esh_A 23 AEKPSHGYELAERLAE-----FGIEIPGIGHMGNIYRVLADLEESGFLSTEWD 70 (118)
T ss_dssp HHSCBCHHHHHHHHHT-----TCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEE
T ss_pred HcCCCCHHHHHHHHHH-----hCCcccCCCCcchHHHHHHHHHHCCCeEEEee
Confidence 4588999999888876 232 2 444 67889999999999977653
No 15
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=20.47 E-value=1.5e+02 Score=25.87 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=36.9
Q ss_pred HhhHhhHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCceeccc
Q 015530 332 IQQEVKEVIISFFILMEQG-KATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVR 394 (405)
Q Consensus 332 eeQe~KEaiLAY~~Ll~~g-~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~~LgLv~~~~ 394 (405)
.|+++.|.|+.| +..+| +.|..||. +.+|.+-. .+.+.|+.|++.|++.++.
T Consensus 6 ~q~~il~~I~~~--~~~~g~~~s~~eia--------~~lgl~~~-tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 6 RQRKVLLFIEEF--IEKNGYPPSVREIA--------RRFRITPR-GALLHLIALEKKGYIERKN 58 (196)
T ss_dssp HHHHHHHHHHHH--HHHHSSCCCHHHHH--------HHHTSCHH-HHHHHHHHHHHTTSEECC-
T ss_pred HHHHHHHHHHHH--HHHhCCCCCHHHHH--------HHcCCCcH-HHHHHHHHHHHCCCEEecC
Confidence 466777777654 33344 47877764 45677755 7999999999999998875
No 16
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=20.38 E-value=64 Score=25.58 Aligned_cols=48 Identities=13% Similarity=0.195 Sum_probs=33.9
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCceecccC
Q 015530 343 FFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVRL 395 (405)
Q Consensus 343 Y~~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~~LgLv~~~~~ 395 (405)
..+|+.+|++|..+|.+.+.. + -|.. .=.|...|++|++-|+|.+...
T Consensus 16 L~~L~~~~~~t~~el~~~l~~---~-~~~~-~~Tvt~~l~rLe~kGlv~R~~~ 63 (126)
T 1sd4_A 16 MNIIWDKKSVSANEIVVEIQK---Y-KEVS-DKTIRTLITRLYKKEIIKRYKS 63 (126)
T ss_dssp HHHHHHSSSEEHHHHHHHHHT---T-SCCC-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHhcCCCCHHHHHHHHhh---c-CCCC-hhhHHHHHHHHHHCCceEEEeC
Confidence 346677888999999777642 0 0111 1248899999999999988764
No 17
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=20.20 E-value=3.3e+02 Score=21.58 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=29.9
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCceecccCC
Q 015530 346 LMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVRLP 396 (405)
Q Consensus 346 Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~~LgLv~~~~~~ 396 (405)
|...|++|..+|.+. +|.+-. .+...+++|++.|+|++...+
T Consensus 40 l~~~~~~t~~eLa~~--------l~~~~~-tvs~~l~~Le~~Glv~r~~~~ 81 (145)
T 3g3z_A 40 LATEGSRTQKHIGEK--------WSLPKQ-TVSGVCKTLAGQGLIEWQEGE 81 (145)
T ss_dssp HHHHCSBCHHHHHHH--------HTCCHH-HHHHHHHHHHHTTSEEECCCS
T ss_pred HHHCCCCCHHHHHHH--------HCCCHH-HHHHHHHHHHHCCCEeeccCC
Confidence 334567898888644 344322 688999999999999886543
Done!