Query 015530
Match_columns 405
No_of_seqs 104 out of 118
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 14:13:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015530.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015530hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sfxa_ a.4.5.50 (A:) Hypothet 48.0 6.2 0.00045 30.1 3.3 46 340-394 23-68 (109)
2 d1ku9a_ a.4.5.36 (A:) DNA-bind 32.3 14 0.00099 28.8 3.1 47 342-397 31-78 (151)
3 d2ev0a1 a.4.5.24 (A:2-62) Mang 29.2 11 0.00082 26.3 1.8 55 333-398 5-59 (61)
4 d2p6ra1 a.4.5.43 (A:404-488) H 26.9 20 0.0015 26.1 3.0 41 350-394 23-69 (85)
5 d1jgsa_ a.4.5.28 (A:) Multiple 26.2 66 0.0048 24.5 6.3 41 347-396 44-84 (138)
6 d1ztda1 a.149.1.2 (A:2-125) Hy 26.1 21 0.0015 28.1 3.0 33 334-372 61-93 (124)
7 d2isya1 a.4.5.24 (A:2-64) Iron 22.5 16 0.0012 25.6 1.6 53 334-398 8-61 (63)
8 d2hs5a1 a.4.5.6 (A:25-93) Puta 20.9 36 0.0026 23.6 3.2 31 364-395 30-60 (69)
9 d1yg2a_ a.4.5.61 (A:) Hypothet 20.8 27 0.002 28.2 2.9 52 341-394 2-56 (178)
10 d3bz6a1 a.4.5.75 (A:13-96) Hyp 18.9 22 0.0016 26.8 1.7 49 351-403 30-83 (84)
No 1
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=48.04 E-value=6.2 Score=30.06 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCceeccc
Q 015530 340 IISFFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVR 394 (405)
Q Consensus 340 iLAY~~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~~LgLv~~~~ 394 (405)
+-+|..|+..|++|..+|.+.+ |+.- =.|.++|++|++.|+|.+..
T Consensus 23 ~~v~~~L~~~g~~t~~eia~~~--------~i~~-~~v~~~l~~L~~~GlV~r~~ 68 (109)
T d1sfxa_ 23 VRIYSLLLERGGMRVSEIAREL--------DLSA-RFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHH--------TCCH-HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhcCCCCHHHHHHHh--------CCCc-chHHHHHHHHHhCCCEEEEe
Confidence 4567888889999999987654 3322 15789999999999997643
No 2
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=32.27 E-value=14 Score=28.78 Aligned_cols=47 Identities=30% Similarity=0.349 Sum_probs=32.5
Q ss_pred HHHHHh-cCCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCceecccCCC
Q 015530 342 SFFILM-EQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVRLPG 397 (405)
Q Consensus 342 AY~~Ll-~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~~LgLv~~~~~~~ 397 (405)
.|+.|+ +.+++|..+|.+.+ |.+ .=.|..++++|++.|+|.+...++
T Consensus 31 i~~~L~~~~~plt~~ela~~l--------~vs-k~~vs~~l~~L~~~GlV~r~~~~~ 78 (151)
T d1ku9a_ 31 VYAILYLSDKPLTISDIMEEL--------KIS-KGNVSMSLKKLEELGFVRKVWIKG 78 (151)
T ss_dssp HHHHHHHCSSCEEHHHHHHHH--------TCC-HHHHHHHHHHHHHTTSEEEECCTT
T ss_pred HHHHHHhCCCCcCHHHHHHHh--------CCC-cchHHHHHHHHHHCCCEEEEEcCC
Confidence 455554 55678988876543 332 225788999999999998776554
No 3
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=29.23 E-value=11 Score=26.28 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=32.9
Q ss_pred hhHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCceecccCCCC
Q 015530 333 QQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVRLPGV 398 (405)
Q Consensus 333 eQe~KEaiLAY~~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~~LgLv~~~~~~~~ 398 (405)
.|++-|+|.- +....|+++..+|. +.+|++-- -|.+++++|++.|+|..+.-.++
T Consensus 5 ~EdYLk~I~~--l~~~~~~v~~~~iA--------~~L~vs~~-SVs~mikrL~~~GlV~~~~Y~~i 59 (61)
T d2ev0a1 5 MEDYIEQIYM--LIEEKGYARVSDIA--------EALAVHPS-SVTKMVQKLDKDEYLIYEKYRGL 59 (61)
T ss_dssp HHHHHHHHHH--HHHHHSSCCHHHHH--------HHHTCCHH-HHHHHHHHHHHTTSEEC----CC
T ss_pred HHHHHHHHHH--HHhcCCCccHHHHH--------HHhCCCch-hHHHHHHHHHHCCCEEEccCCCe
Confidence 3566666633 22345667776654 33454322 57899999999999988776655
No 4
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=26.86 E-value=20 Score=26.05 Aligned_cols=41 Identities=24% Similarity=0.502 Sum_probs=28.5
Q ss_pred CC-CCHHHHHHHHHHHHHHHh-----CCcceecHHHHHHHHHHcCceeccc
Q 015530 350 GK-ATRQDLDLRCEELIKEEF-----GESCNFDVDDAVHKLEKLGIVARVR 394 (405)
Q Consensus 350 g~-lT~~~Ld~~~E~~L~~~f-----g~~vdFdv~dAL~kL~~LgLv~~~~ 394 (405)
|. -|.++ +.+|+...| +..+.--|++|++.|++.|+|+.++
T Consensus 23 g~i~s~~e----~~~~l~~Tf~~~q~~~~l~~~i~~~l~~L~~~~~I~~~~ 69 (85)
T d2p6ra1 23 GYAKTLEE----LEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAA 69 (85)
T ss_dssp TSCSSHHH----HHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESS
T ss_pred CCCCCHHH----HHHHHHHhHHHHhhhhcHHHHHHHHHHHHHHCCCccccc
Confidence 44 35555 445555444 4556777999999999999997654
No 5
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=26.25 E-value=66 Score=24.47 Aligned_cols=41 Identities=17% Similarity=0.065 Sum_probs=28.2
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCceecccCC
Q 015530 347 MEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVRLP 396 (405)
Q Consensus 347 l~~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~~LgLv~~~~~~ 396 (405)
..+|+.|..+|.....- ++. .+...+++|++.|+|++...+
T Consensus 44 ~~~~~~t~~ela~~~~i---~~~------~vs~~v~~L~~~glv~r~~~~ 84 (138)
T d1jgsa_ 44 RCAACITPVELKKVLSV---DLG------ALTRMLDRLVCKGWVERLPNP 84 (138)
T ss_dssp HHHSSBCHHHHHHHHTC---CHH------HHHHHHHHHHHTTSEEEEECT
T ss_pred HhCcCCCHHHHHHHHCC---CHh------HHHHHHHHHhhCCCEEEeecc
Confidence 45677888887554322 111 377899999999999876544
No 6
>d1ztda1 a.149.1.2 (A:2-125) Hypothetical protein PF0609 {Pyrococcus furiosus [TaxId: 2261]}
Probab=26.08 E-value=21 Score=28.12 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=22.2
Q ss_pred hHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCCc
Q 015530 334 QEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGES 372 (405)
Q Consensus 334 Qe~KEaiLAY~~Ll~~g~lT~~~Ld~~~E~~L~~~fg~~ 372 (405)
-++.||++||+||. |..|.+|- -+.+++.+..+
T Consensus 61 Gd~aEA~iAyAWLe--g~it~eEa----vEilk~nl~~d 93 (124)
T d1ztda1 61 GDYAEALIAKAWLM--GLISEREA----VEIIKKNLYPE 93 (124)
T ss_dssp HHHHHHHHHHHHHT--TSSCHHHH----HHHHHTTCCGG
T ss_pred cHHHHHHHHHHHHh--ccchHHHH----HHHHHHhCcHH
Confidence 46789999999994 77776542 23455555544
No 7
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=22.52 E-value=16 Score=25.59 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=33.0
Q ss_pred hHhhHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCceecccCCCC
Q 015530 334 QEVKEVIISFFILME-QGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVRLPGV 398 (405)
Q Consensus 334 Qe~KEaiLAY~~Ll~-~g~lT~~~Ld~~~E~~L~~~fg~~vdFdv~dAL~kL~~LgLv~~~~~~~~ 398 (405)
|++-|+|. -|.. .|.++..+|. +.+|+.- =-|.+++++|.+.|+|.-++-.++
T Consensus 8 EdYL~~I~---~L~~~~~~v~~~~iA--------~~L~vs~-~SVt~mvkrL~~~Glv~~~~y~~i 61 (63)
T d2isya1 8 EMYLRTIY---DLEEEGVTPLRARIA--------ERLDQSG-PTVSQTVSRMERDGLLRVAGDRHL 61 (63)
T ss_dssp HHHHHHHH---HHHHTTCCCCHHHHH--------HHHTCCH-HHHHHHHHHHHHTTSEEECTTSCE
T ss_pred HHHHHHHH---HHHhcCCCCcHHHHH--------HHhCCCc-hhHHHHHHHHHHCCCEEEcCCCce
Confidence 44555554 2333 4556665553 3344432 147899999999999988776554
No 8
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=20.91 E-value=36 Score=23.62 Aligned_cols=31 Identities=23% Similarity=0.016 Sum_probs=24.5
Q ss_pred HHHHHhCCcceecHHHHHHHHHHcCceecccC
Q 015530 364 LIKEEFGESCNFDVDDAVHKLEKLGIVARVRL 395 (405)
Q Consensus 364 ~L~~~fg~~vdFdv~dAL~kL~~LgLv~~~~~ 395 (405)
=|.++||+.- -.|.+|+..|++.|+|+...-
T Consensus 30 ~La~~~~vSr-~tvr~Al~~L~~~Gli~~~~~ 60 (69)
T d2hs5a1 30 DICAALDVSR-NTVREAFQILIEDRLVAHELN 60 (69)
T ss_dssp HHHHHHTCCH-HHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHCCCH-HHHHHHHHHHHHCCcEEEEcC
Confidence 3556788764 579999999999999976654
No 9
>d1yg2a_ a.4.5.61 (A:) Hypothetical protein AphA {Vibrio cholerae [TaxId: 666]}
Probab=20.75 E-value=27 Score=28.20 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=38.3
Q ss_pred HHHHHH--hcCCCCCHHHHHHHHHHHHHHHhCCccee-cHHHHHHHHHHcCceeccc
Q 015530 341 ISFFIL--MEQGKATRQDLDLRCEELIKEEFGESCNF-DVDDAVHKLEKLGIVARVR 394 (405)
Q Consensus 341 LAY~~L--l~~g~lT~~~Ld~~~E~~L~~~fg~~vdF-dv~dAL~kL~~LgLv~~~~ 394 (405)
|.|.+| +..+++|.=+|.+.+|..+-..+ ++.+ -|=-+|++|++.|+|+...
T Consensus 2 l~~~iLg~L~~~~~~GYei~~~~~~~~~~~w--~~s~g~iY~~L~kLe~~Gli~~~~ 56 (178)
T d1yg2a_ 2 LPHVILTVLSTRDATGYDITKEFSASIGYFW--KASHQQVYRELNKMGEQGLVTCVL 56 (178)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTTGGGGTC--CCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhCCcc--CCCCCcHHHHHHHHHHCCCeEEEe
Confidence 456666 46789999999999987764433 3333 3667999999999997543
No 10
>d3bz6a1 a.4.5.75 (A:13-96) Hypothetical protein PSPTO2686 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=18.93 E-value=22 Score=26.75 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHHHhCCc--c---eecHHHHHHHHHHcCceecccCCCCCCCCC
Q 015530 351 KATRQDLDLRCEELIKEEFGES--C---NFDVDDAVHKLEKLGIVARVRLPGVPHITH 403 (405)
Q Consensus 351 ~lT~~~Ld~~~E~~L~~~fg~~--v---dFdv~dAL~kL~~LgLv~~~~~~~~~~~~~ 403 (405)
|+|.-.|-..|.+ |.+-+ + +=+|.+||+.|.+.|||.+....+++.-.|
T Consensus 30 PLsLNaL~~aCNQ----KsnR~PVm~l~E~eV~~ald~L~~~~Lv~~~~gsRv~ky~H 83 (84)
T d3bz6a1 30 PLTLNALVIACNQ----KTSRDPVMNLTQGQVGQSLRALEGRGLTRLVMGSRADRWEH 83 (84)
T ss_dssp SEEHHHHHHHHTC----SSSCSSCCCCCHHHHHHHHHHHHHTTSEEEECCSSCCEEEE
T ss_pred cchHHHHHHHHcc----ccccCccccCCHHHHHHHHHHHHHCCCeEeeccCCcccccc
Confidence 3666666666652 33321 1 236788999999999998876555655444
Done!