BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015531
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
MNV+ V AE PWSKTGGLGDV G LP A+A GHRVMV++P Y Y + DT + +
Sbjct: 10 MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIK 69
Query: 338 VDRQDIEVAYFQAYIDGVDFVFLDSPLFRH-----LGNNIYGGGR----EDILKRMVLFC 388
V + V +F Y GVD VF+D P F G IYG +D R L C
Sbjct: 70 VADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLC 129
Query: 389 KAAIE 393
+AA+E
Sbjct: 130 QAALE 134
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 27/44 (61%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321
MNV+ V++E P KTGGL DV GALP AL G R + P Y
Sbjct: 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGY 44
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 26/43 (60%)
Query: 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321
NV+ V++E P KTGGL DV GALP AL G R + P Y
Sbjct: 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGY 44
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 17/120 (14%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+L+ E P K GGL + A+ +ALA GH V+V P +G + + ++ G + R
Sbjct: 3 MKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRF-QGEEIG-KIRVF 59
Query: 338 VDRQDIEVAY-----FQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAI 392
+ ++V+Y + Y G LDS ++YG G + ++++ V F +A++
Sbjct: 60 GEEVQVKVSYEERGNLRIYRIGGG--LLDS-------EDVYGPGWDGLIRKAVTFGRASV 110
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 17/120 (14%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+L+ E P K GGL + A+ +ALA GH V+V P +G + + ++ G + R
Sbjct: 3 MKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRF-QGEEIG-KIRVF 59
Query: 338 VDRQDIEVAY-----FQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAI 392
+ ++V+Y + Y G LDS ++YG G + ++++ V F +A++
Sbjct: 60 GEEVQVKVSYEERGNLRIYRIGGG--LLDS-------EDVYGPGWDGLIRKAVTFGRASV 110
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 17/120 (14%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+L+ E P K GGL + A+ +ALA GH V+V P +G + + ++ G + R
Sbjct: 4 MKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRF-QGEEIG-KIRVF 60
Query: 338 VDRQDIEVAY-----FQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAI 392
+ ++V+Y + Y G LDS ++YG G + ++++ V F +A++
Sbjct: 61 GEEVQVKVSYEERGNLRIYRIGGG--LLDS-------EDVYGPGWDGLIRKAVTFGRASV 111
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+ V++E P KTGGL DV GALP A G V+ P + + G+
Sbjct: 1 MQVLHVSSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRR----GVTDAQV 56
Query: 338 VDRQDI---EVAYFQAYIDGVDFVFLDSP 363
V R+D + + +GV +D+P
Sbjct: 57 VSRRDTFAGHITLLFGHYNGVGIYLIDAP 85
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+ V +E P KTGGL DV GALP A G V+ P + + G+
Sbjct: 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRR----GVTDAQV 56
Query: 338 VDRQDI---EVAYFQAYIDGVDFVFLDSP 363
V R+D + + +GV +D+P
Sbjct: 57 VSRRDTFAGHITLLFGHYNGVGIYLIDAP 85
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+ V +E P KTGGL DV GALP A G V+ P + + G+
Sbjct: 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRR----GVTDAQV 56
Query: 338 VDRQDI---EVAYFQAYIDGVDFVFLDSP 363
V R+D + + +GV +D+P
Sbjct: 57 VSRRDTFAGHITLLFGHYNGVGIYLIDAP 85
>pdb|4GI5|A Chain A, Crystal Structure Of A Putative Quinone Reductase From
Klebsiella Pneumoniae (Target Psi-013613)
pdb|4GI5|B Chain B, Crystal Structure Of A Putative Quinone Reductase From
Klebsiella Pneumoniae (Target Psi-013613)
Length = 280
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 47 LNNSVSGFSFRS-NKSGHLLKVKHVKAT--GAGFVEDESGNEPEDSLQATIEKSKKVLAM 103
LN ++ F+ R ++GH ++V + A AG+ D+SG P SK+ A
Sbjct: 37 LNGALKNFAIRHLQQAGHEVQVSDLYAXRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQ 96
Query: 104 QKQLLQQISERRKLVSS 120
Q ++E+ KL+ +
Sbjct: 97 GTQSADIVAEQEKLLWA 113
>pdb|3D1L|A Chain A, Crystal Structure Of Putative Nadp Oxidoreductase Bf3122
From Bacteroides Fragilis
pdb|3D1L|B Chain B, Crystal Structure Of Putative Nadp Oxidoreductase Bf3122
From Bacteroides Fragilis
Length = 266
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 295 GLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDG 354
G G++A L KAL R+G R++ V A + Y D ++ Y + YI
Sbjct: 17 GAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVN-PYAKLYI-- 73
Query: 355 VDFVFLDSPLFRHLGNNIYGGGREDIL 381
V L F L I G RE+ L
Sbjct: 74 ---VSLKDSAFAELLQGIVEGKREEAL 97
>pdb|3H09|A Chain A, The Structure Of Haemophilus Influenzae Iga1 Protease
pdb|3H09|B Chain B, The Structure Of Haemophilus Influenzae Iga1 Protease
Length = 989
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 197 NRLSPE--KESIDIDSSKLLKGTDTQSTWSDELPSFLSRTAVISSPKEERHEKDLDQVQQ 254
N PE K +D D++ L G++TQ W+ P+ +T+VIS+ E + D Q
Sbjct: 298 NIYKPEFAKTVLDKDTAGSLTGSNTQYNWN---PT--GKTSVISNGSESLNVDLFDSSQD 352
Query: 255 IDSEPIEPKTEEAKPPPLAGANVM 278
DS+ K K L G+ +
Sbjct: 353 TDSK----KNNHGKSVTLRGSGTL 372
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,961,709
Number of Sequences: 62578
Number of extensions: 446604
Number of successful extensions: 804
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 790
Number of HSP's gapped (non-prelim): 21
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)