Query 015531
Match_columns 405
No_of_seqs 154 out of 1041
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 07:10:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14099 glycogen synthase; Pr 100.0 1.3E-30 2.9E-35 267.2 15.2 121 276-398 2-128 (485)
2 PRK14098 glycogen synthase; Pr 100.0 5.8E-30 1.3E-34 262.7 15.0 127 273-400 1-140 (489)
3 PF08323 Glyco_transf_5: Starc 100.0 1.1E-28 2.3E-33 232.8 8.7 120 279-400 1-132 (245)
4 PLN02939 transferase, transfer 99.9 1.3E-27 2.9E-32 261.7 15.8 123 275-400 479-609 (977)
5 TIGR02095 glgA glycogen/starch 99.9 9.5E-27 2.1E-31 234.1 14.6 122 278-399 1-126 (473)
6 PLN02316 synthase/transferase 99.9 1.8E-24 3.9E-29 239.4 16.2 120 276-400 586-708 (1036)
7 PRK00654 glgA glycogen synthas 99.9 1.9E-23 4.2E-28 211.1 13.8 115 278-400 1-117 (466)
8 cd03791 GT1_Glycogen_synthase_ 99.9 1E-22 2.2E-27 202.9 14.2 120 279-399 1-127 (476)
9 COG0297 GlgA Glycogen synthase 99.9 2.4E-21 5.1E-26 201.2 12.3 120 278-399 1-126 (487)
10 TIGR02094 more_P_ylases alpha- 98.3 7.5E-06 1.6E-10 88.1 12.2 121 280-401 1-161 (601)
11 cd04299 GT1_Glycogen_Phosphory 98.0 8.7E-05 1.9E-09 82.3 13.4 118 280-401 88-248 (778)
12 PLN02871 UDP-sulfoquinovose:DA 96.3 0.0094 2E-07 60.9 7.1 47 275-322 56-102 (465)
13 cd03802 GT1_AviGT4_like This f 96.3 0.0077 1.7E-07 56.2 5.6 46 278-323 1-48 (335)
14 PRK10307 putative glycosyl tra 96.0 0.0091 2E-07 59.2 4.9 41 278-320 1-41 (412)
15 cd03805 GT1_ALG2_like This fam 95.4 0.025 5.5E-07 54.7 5.3 41 278-322 1-41 (392)
16 PLN02846 digalactosyldiacylgly 94.6 0.042 9.1E-07 58.1 4.7 45 276-322 3-48 (462)
17 cd03794 GT1_wbuB_like This fam 94.2 0.052 1.1E-06 49.9 4.0 44 279-324 1-44 (394)
18 cd03801 GT1_YqgM_like This fam 94.0 0.1 2.2E-06 47.1 5.2 44 279-324 1-44 (374)
19 cd03817 GT1_UGDG_like This fam 93.3 0.12 2.6E-06 47.6 4.6 44 279-324 1-44 (374)
20 PF13579 Glyco_trans_4_4: Glyc 93.3 0.1 2.2E-06 42.9 3.8 31 294-324 1-31 (160)
21 cd03814 GT1_like_2 This family 93.3 0.11 2.5E-06 48.0 4.5 43 279-323 1-43 (364)
22 cd04962 GT1_like_5 This family 92.6 0.13 2.8E-06 49.0 3.9 39 278-321 1-39 (371)
23 cd03821 GT1_Bme6_like This fam 92.6 0.16 3.4E-06 46.7 4.3 44 279-324 1-44 (375)
24 cd03795 GT1_like_4 This family 92.5 0.18 3.9E-06 47.3 4.6 42 279-322 1-42 (357)
25 cd03796 GT1_PIG-A_like This fa 92.3 0.21 4.5E-06 49.7 5.0 42 279-322 1-42 (398)
26 cd03820 GT1_amsD_like This fam 92.0 0.31 6.8E-06 44.1 5.4 42 279-323 1-42 (348)
27 cd03823 GT1_ExpE7_like This fa 91.9 0.26 5.6E-06 45.4 4.8 44 279-323 1-44 (359)
28 cd03809 GT1_mtfB_like This fam 91.9 0.24 5.2E-06 46.0 4.6 46 279-325 1-46 (365)
29 cd03825 GT1_wcfI_like This fam 91.4 0.33 7.1E-06 45.7 5.0 43 278-324 1-43 (365)
30 PF13439 Glyco_transf_4: Glyco 91.3 0.3 6.6E-06 40.8 4.3 36 290-325 8-43 (177)
31 cd04955 GT1_like_6 This family 91.0 0.35 7.5E-06 45.6 4.9 43 279-322 1-43 (363)
32 cd03807 GT1_WbnK_like This fam 90.8 0.37 8E-06 44.1 4.6 39 279-321 1-39 (365)
33 TIGR02149 glgA_Coryne glycogen 90.4 0.35 7.6E-06 46.7 4.4 43 278-322 1-43 (388)
34 TIGR03449 mycothiol_MshA UDP-N 90.0 0.31 6.8E-06 47.9 3.7 43 280-322 1-48 (405)
35 cd03784 GT1_Gtf_like This fami 89.3 0.46 9.9E-06 47.0 4.3 36 278-321 1-38 (401)
36 cd03811 GT1_WabH_like This fam 89.2 0.59 1.3E-05 42.3 4.6 42 279-324 1-42 (353)
37 cd01635 Glycosyltransferase_GT 87.8 0.67 1.4E-05 39.9 3.9 37 280-318 1-37 (229)
38 cd04951 GT1_WbdM_like This fam 87.8 0.65 1.4E-05 43.6 4.0 39 279-321 1-39 (360)
39 PF03033 Glyco_transf_28: Glyc 87.4 1.1 2.3E-05 37.8 4.7 28 294-321 7-36 (139)
40 cd03822 GT1_ecORF704_like This 87.3 0.96 2.1E-05 42.0 4.8 41 279-322 1-41 (366)
41 cd03808 GT1_cap1E_like This fa 87.0 0.87 1.9E-05 41.4 4.3 39 279-323 1-39 (359)
42 cd03800 GT1_Sucrose_synthase T 86.2 0.84 1.8E-05 43.7 3.9 44 279-322 1-49 (398)
43 TIGR01133 murG undecaprenyldip 85.3 1.3 2.8E-05 42.4 4.7 39 278-322 1-39 (348)
44 PRK09922 UDP-D-galactose:(gluc 84.8 1.4 3E-05 43.2 4.8 42 278-322 1-44 (359)
45 cd03812 GT1_CapH_like This fam 82.4 1.6 3.5E-05 41.1 4.0 41 279-323 1-41 (358)
46 TIGR02472 sucr_P_syn_N sucrose 82.3 2.2 4.7E-05 43.6 5.1 33 290-322 22-56 (439)
47 cd03792 GT1_Trehalose_phosphor 79.4 2.7 5.9E-05 41.1 4.6 39 279-321 1-39 (372)
48 PRK13609 diacylglycerol glucos 75.3 4.4 9.6E-05 39.9 4.8 42 276-322 3-44 (380)
49 PF13477 Glyco_trans_4_2: Glyc 74.7 4.6 9.9E-05 33.7 4.1 36 279-323 1-36 (139)
50 PRK10125 putative glycosyl tra 73.9 5.3 0.00012 40.9 5.1 41 278-322 1-41 (405)
51 cd03798 GT1_wlbH_like This fam 72.7 5.5 0.00012 36.3 4.4 42 280-322 1-42 (377)
52 PRK00726 murG undecaprenyldiph 72.5 5.9 0.00013 38.6 4.8 40 277-322 1-40 (357)
53 cd03799 GT1_amsK_like This is 69.5 7.8 0.00017 36.3 4.8 40 279-323 1-40 (355)
54 cd03819 GT1_WavL_like This fam 69.2 5.4 0.00012 37.6 3.6 33 289-321 5-37 (355)
55 PF02951 GSH-S_N: Prokaryotic 61.6 12 0.00027 33.0 4.2 86 278-366 1-90 (119)
56 TIGR02470 sucr_synth sucrose s 59.5 11 0.00025 42.8 4.4 46 277-322 255-319 (784)
57 TIGR01915 npdG NADPH-dependent 58.2 14 0.00029 34.6 4.1 28 293-320 6-33 (219)
58 PHA03003 palmytilated EEV memb 57.8 16 0.00035 37.4 4.8 45 279-323 231-279 (369)
59 PF06564 YhjQ: YhjQ protein; 55.8 15 0.00034 36.1 4.2 34 278-317 1-36 (243)
60 cd03818 GT1_ExpC_like This fam 55.6 11 0.00024 37.5 3.2 35 279-322 1-35 (396)
61 COG1819 Glycosyl transferases, 55.2 12 0.00026 38.8 3.5 37 277-321 1-39 (406)
62 PHA03392 egt ecdysteroid UDP-g 54.6 11 0.00023 40.4 3.0 40 278-322 21-60 (507)
63 TIGR01007 eps_fam capsular exo 54.6 19 0.00042 32.7 4.4 35 277-317 16-52 (204)
64 TIGR02468 sucrsPsyn_pln sucros 52.8 22 0.00047 41.9 5.3 46 277-322 169-225 (1050)
65 PRK06718 precorrin-2 dehydroge 50.2 23 0.0005 33.3 4.2 30 292-322 15-44 (202)
66 KOG2130 Phosphatidylserine-spe 48.9 16 0.00034 38.2 3.1 37 98-144 321-357 (407)
67 PRK06249 2-dehydropantoate 2-r 48.6 24 0.00053 34.7 4.3 35 275-320 3-37 (313)
68 PF00201 UDPGT: UDP-glucoronos 44.7 10 0.00022 39.1 1.1 24 298-321 14-37 (500)
69 PRK11199 tyrA bifunctional cho 43.8 29 0.00063 35.6 4.1 34 277-320 98-131 (374)
70 PF01972 SDH_sah: Serine dehyd 42.8 24 0.00052 35.9 3.3 31 293-323 100-130 (285)
71 PRK06756 flavodoxin; Provision 42.2 51 0.0011 28.7 4.9 37 277-318 1-37 (148)
72 TIGR01380 glut_syn glutathione 41.3 31 0.00067 34.3 3.8 44 278-324 1-44 (312)
73 cd00138 PLDc Phospholipase D. 39.4 58 0.0013 28.4 4.9 45 279-325 36-80 (176)
74 PF02441 Flavoprotein: Flavopr 39.0 51 0.0011 28.4 4.4 35 278-320 1-36 (129)
75 COG0569 TrkA K+ transport syst 38.7 25 0.00055 33.5 2.7 31 294-324 6-36 (225)
76 COG0058 GlgP Glucan phosphoryl 38.6 1.4E+02 0.0031 34.2 8.8 110 286-399 108-256 (750)
77 PRK06522 2-dehydropantoate 2-r 38.2 43 0.00093 32.0 4.1 23 297-319 9-31 (304)
78 PRK13982 bifunctional SbtC-lik 37.9 1.1E+02 0.0024 33.1 7.5 37 277-321 70-107 (475)
79 PRK08655 prephenate dehydrogen 37.3 39 0.00083 35.5 3.9 27 294-320 7-33 (437)
80 PRK05246 glutathione synthetas 36.2 42 0.0009 33.3 3.8 45 277-324 1-45 (316)
81 PRK07454 short chain dehydroge 36.2 49 0.0011 30.1 4.0 33 277-318 5-37 (241)
82 CHL00175 minD septum-site dete 35.9 62 0.0013 31.0 4.8 35 277-317 14-50 (281)
83 PRK10964 ADP-heptose:LPS hepto 35.8 59 0.0013 31.8 4.7 35 278-320 1-39 (322)
84 PF01975 SurE: Survival protei 35.6 34 0.00073 32.5 2.9 25 300-324 16-40 (196)
85 PF03358 FMN_red: NADPH-depend 33.8 82 0.0018 27.1 4.8 40 278-320 1-40 (152)
86 KOG1192 UDP-glucuronosyl and U 32.8 67 0.0015 32.9 4.8 40 278-324 7-46 (496)
87 cd02033 BchX Chlorophyllide re 32.3 89 0.0019 32.0 5.5 35 276-317 29-65 (329)
88 COG0287 TyrA Prephenate dehydr 32.0 36 0.00077 34.0 2.6 25 293-317 8-32 (279)
89 PRK10916 ADP-heptose:LPS hepto 31.3 54 0.0012 32.5 3.7 36 278-321 1-40 (348)
90 PRK09134 short chain dehydroge 31.3 94 0.002 28.8 5.1 32 277-317 8-39 (258)
91 PRK10675 UDP-galactose-4-epime 31.1 62 0.0013 31.2 4.0 26 293-318 6-31 (338)
92 PRK07102 short chain dehydroge 31.0 74 0.0016 29.1 4.3 25 294-318 8-32 (243)
93 PRK00094 gpsA NAD(P)H-dependen 31.0 64 0.0014 31.2 4.1 33 277-320 1-33 (325)
94 PRK09730 putative NAD(P)-bindi 30.8 68 0.0015 29.0 4.0 26 293-318 7-32 (247)
95 cd03785 GT1_MurG MurG is an N- 29.9 88 0.0019 30.0 4.8 24 299-322 15-38 (350)
96 PLN02712 arogenate dehydrogena 29.8 1.6E+02 0.0036 32.9 7.4 34 276-320 51-84 (667)
97 TIGR01426 MGT glycosyltransfer 29.6 43 0.00093 33.4 2.7 28 294-321 4-33 (392)
98 PF13528 Glyco_trans_1_3: Glyc 29.2 81 0.0018 30.1 4.4 38 278-322 1-38 (318)
99 PLN02842 nucleotide kinase 29.1 81 0.0017 34.5 4.8 48 273-320 257-307 (505)
100 PF02374 ArsA_ATPase: Anion-tr 29.1 69 0.0015 32.1 4.0 34 278-318 1-36 (305)
101 CHL00194 ycf39 Ycf39; Provisio 29.0 69 0.0015 31.1 3.9 26 293-318 6-31 (317)
102 PLN00198 anthocyanidin reducta 28.8 1.1E+02 0.0023 29.8 5.3 38 271-318 3-40 (338)
103 PRK06947 glucose-1-dehydrogena 28.5 93 0.002 28.4 4.5 32 277-317 1-32 (248)
104 PF13241 NAD_binding_7: Putati 28.3 46 0.00099 27.7 2.2 28 293-321 13-40 (103)
105 PRK08305 spoVFB dipicolinate s 27.3 1.2E+02 0.0026 29.2 5.1 29 292-320 12-42 (196)
106 KOG1111 N-acetylglucosaminyltr 27.2 60 0.0013 34.6 3.3 45 278-324 1-45 (426)
107 COG2144 Selenophosphate synthe 26.9 38 0.00083 35.0 1.8 28 92-122 186-213 (324)
108 PLN00016 RNA-binding protein; 26.8 74 0.0016 31.9 3.8 37 278-320 53-89 (378)
109 PRK08229 2-dehydropantoate 2-r 26.6 78 0.0017 31.1 3.9 31 278-319 3-33 (341)
110 PF10727 Rossmann-like: Rossma 26.2 57 0.0012 29.0 2.6 31 277-318 10-40 (127)
111 PRK09271 flavodoxin; Provision 26.2 1.3E+02 0.0028 26.9 4.9 35 278-317 1-35 (160)
112 KOG1200 Mitochondrial/plastidi 26.2 38 0.00082 33.6 1.6 45 278-322 144-197 (256)
113 CHL00072 chlL photochlorophyll 26.1 85 0.0018 31.0 4.0 25 293-317 8-34 (290)
114 PLN02695 GDP-D-mannose-3',5'-e 25.9 1.3E+02 0.0028 30.4 5.3 40 268-318 13-52 (370)
115 PRK06924 short chain dehydroge 25.8 93 0.002 28.4 4.0 25 294-318 8-32 (251)
116 PRK10037 cell division protein 25.7 81 0.0018 29.9 3.7 34 278-317 1-36 (250)
117 PRK12921 2-dehydropantoate 2-r 25.7 82 0.0018 30.2 3.8 31 278-319 1-31 (305)
118 TIGR03088 stp2 sugar transfera 25.6 86 0.0019 30.4 3.9 36 279-318 3-38 (374)
119 PRK10818 cell division inhibit 25.6 1.1E+02 0.0024 29.0 4.6 36 277-318 1-38 (270)
120 TIGR00715 precor6x_red precorr 25.5 1E+02 0.0022 30.4 4.4 25 294-319 7-31 (256)
121 PF03446 NAD_binding_2: NAD bi 25.3 72 0.0016 28.4 3.1 24 295-318 8-31 (163)
122 PRK05562 precorrin-2 dehydroge 24.2 1E+02 0.0022 30.1 4.0 33 289-322 27-59 (223)
123 PLN00141 Tic62-NAD(P)-related 24.1 1.6E+02 0.0035 27.5 5.3 25 294-318 24-48 (251)
124 TIGR03371 cellulose_yhjQ cellu 24.1 1.1E+02 0.0024 28.2 4.2 34 278-317 1-36 (246)
125 PF07736 CM_1: Chorismate muta 24.0 69 0.0015 28.8 2.6 26 81-117 10-35 (118)
126 TIGR01777 yfcH conserved hypot 23.9 70 0.0015 29.7 2.9 28 292-319 3-30 (292)
127 PRK10446 ribosomal protein S6 23.5 1.2E+02 0.0025 29.7 4.4 35 278-320 1-35 (300)
128 PF01256 Carb_kinase: Carbohyd 23.2 83 0.0018 30.6 3.3 33 280-312 171-203 (242)
129 PRK06101 short chain dehydroge 23.1 1.1E+02 0.0025 28.0 4.0 25 294-318 8-32 (240)
130 PHA02820 phospholipase-D-like 23.0 92 0.002 32.9 3.8 45 279-323 233-282 (424)
131 PRK05854 short chain dehydroge 22.7 1.7E+02 0.0036 28.7 5.3 30 279-317 15-44 (313)
132 PLN02256 arogenate dehydrogena 22.5 1.3E+02 0.0029 30.1 4.7 34 276-320 35-68 (304)
133 TIGR03018 pepcterm_TyrKin exop 22.3 1.6E+02 0.0035 27.1 4.9 37 276-318 33-72 (207)
134 TIGR01968 minD_bact septum sit 22.1 1.3E+02 0.0029 27.7 4.3 33 279-317 2-36 (261)
135 PRK05693 short chain dehydroge 22.1 1.2E+02 0.0025 28.5 4.0 32 278-318 1-32 (274)
136 PRK05708 2-dehydropantoate 2-r 22.0 1.2E+02 0.0025 30.1 4.2 33 277-320 2-34 (305)
137 COG0859 RfaF ADP-heptose:LPS h 21.9 1.4E+02 0.003 29.9 4.7 38 277-322 1-42 (334)
138 PLN02686 cinnamoyl-CoA reducta 21.5 1.8E+02 0.0038 29.3 5.4 26 293-318 59-84 (367)
139 PRK10422 lipopolysaccharide co 21.5 99 0.0021 30.8 3.5 37 275-319 3-43 (352)
140 PRK08267 short chain dehydroge 21.3 1.3E+02 0.0028 27.8 4.0 25 294-318 8-32 (260)
141 PF08659 KR: KR domain; Inter 21.3 68 0.0015 28.9 2.2 32 290-321 3-34 (181)
142 PLN02662 cinnamyl-alcohol dehy 21.1 1E+02 0.0023 29.3 3.5 26 293-318 10-35 (322)
143 PLN02572 UDP-sulfoquinovose sy 21.1 1.9E+02 0.0042 30.2 5.7 25 293-317 53-77 (442)
144 PF08372 PRT_C: Plant phosphor 21.1 73 0.0016 29.7 2.3 32 83-116 41-72 (156)
145 PRK05993 short chain dehydroge 21.0 1.5E+02 0.0032 28.1 4.4 32 278-318 4-35 (277)
146 TIGR01963 PHB_DH 3-hydroxybuty 20.9 91 0.002 28.3 2.9 27 293-319 7-33 (255)
147 PRK06953 short chain dehydroge 20.7 1.2E+02 0.0026 27.5 3.6 26 293-318 7-32 (222)
148 PF12076 Wax2_C: WAX2 C-termin 20.6 98 0.0021 29.3 3.0 25 293-317 4-28 (164)
149 COG0451 WcaG Nucleoside-diphos 20.6 85 0.0018 29.4 2.7 31 292-322 5-35 (314)
150 PRK12825 fabG 3-ketoacyl-(acyl 20.5 97 0.0021 27.7 3.0 27 293-319 12-38 (249)
151 COG0702 Predicted nucleoside-d 20.2 88 0.0019 28.7 2.7 35 290-324 3-37 (275)
No 1
>PRK14099 glycogen synthase; Provisional
Probab=99.97 E-value=1.3e-30 Score=267.16 Aligned_cols=121 Identities=30% Similarity=0.358 Sum_probs=100.7
Q ss_pred CCceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCCCCCCC-CceEEEEEe-CCcceEEEEEEEEeC
Q 015531 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQD-TGIRKRYRV-DRQDIEVAYFQAYID 353 (405)
Q Consensus 276 n~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i~e~~~-~~~~~~~~~-~G~~~~v~V~~~~i~ 353 (405)
+.|||||||+||+||+||||||||+++||+||+++||+|+||||+|+++..... ......+.+ .| ..+.++++..+
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 79 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFG--GPARLLAARAG 79 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCC--ceEEEEEEEeC
Confidence 569999999999999999999999999999999999999999999999853211 111112221 12 25788999899
Q ss_pred CeEEEEEeCCCCCCCCCCcccC----CCCCHHHHHHHHHHHHHHHHhhc
Q 015531 354 GVDFVFLDSPLFRHLGNNIYGG----GREDILKRMVLFCKAAIEVKFYS 398 (405)
Q Consensus 354 GV~vYFIdnp~fF~R~~~IYG~----~y~DNaeRFafFckAALEll~~L 398 (405)
||++|||++|.||+|++.+|++ +|.||++||+|||+||+|+++.+
T Consensus 80 ~v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~ 128 (485)
T PRK14099 80 GLDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGL 128 (485)
T ss_pred CceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999987668963 58999999999999999999875
No 2
>PRK14098 glycogen synthase; Provisional
Probab=99.97 E-value=5.8e-30 Score=262.66 Aligned_cols=127 Identities=14% Similarity=0.264 Sum_probs=100.2
Q ss_pred CCCCCceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCCCCCC----CCceEEEE--EeCCcceEEE
Q 015531 273 AGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQ----DTGIRKRY--RVDRQDIEVA 346 (405)
Q Consensus 273 ~~~n~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i~e~~----~~~~~~~~--~~~G~~~~v~ 346 (405)
+++++|||||||+||+||+||||||||+++||+||+++||+|+||||+|+++.... .......+ .+++....+.
T Consensus 1 ~~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (489)
T PRK14098 1 MSRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLH 80 (489)
T ss_pred CCCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEE
Confidence 35778999999999999999999999999999999999999999999999986431 11111122 2333222233
Q ss_pred EEEEEeC--CeEEEEEeCCCCCCCCCCcccC-----CCCCHHHHHHHHHHHHHHHHhhcCC
Q 015531 347 YFQAYID--GVDFVFLDSPLFRHLGNNIYGG-----GREDILKRMVLFCKAAIEVKFYSRH 400 (405)
Q Consensus 347 V~~~~i~--GV~vYFIdnp~fF~R~~~IYG~-----~y~DNaeRFafFckAALEll~~L~~ 400 (405)
++....+ +|++|||+||.||+|+ ++|++ +|+||++||++||+|+++++++++|
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~f~r~-~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~ 140 (489)
T PRK14098 81 VKVTALPSSKIQTYFLYNEKYFKRN-GLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGW 140 (489)
T ss_pred EEEecccCCCceEEEEeCHHHcCCC-CcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCC
Confidence 4344444 6999999999999975 69975 4889999999999999999988765
No 3
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=99.95 E-value=1.1e-28 Score=232.83 Aligned_cols=120 Identities=36% Similarity=0.585 Sum_probs=93.3
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCCCCCC-CCceEE--------EEEeCCcceEEEEEE
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQ-DTGIRK--------RYRVDRQDIEVAYFQ 349 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i~e~~-~~~~~~--------~~~~~G~~~~v~V~~ 349 (405)
||||||+||+||+||||||||+++||+||+++||+|+||||+|+.+.... ...... .+.+.. ...+.+++
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~v~~ 79 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEYFQLEPVRRLSVPFGGPVPVGV-WYEVRVYR 79 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHCTTEEEEEEES-STTCEEEEE-----EEEEE
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhhhcceEEEEecccccccccccc-ceEEEEEE
Confidence 79999999999999999999999999999999999999999998775432 111111 122222 25788999
Q ss_pred EEeCCeEEEEEeCCCCCCCCCCcccC---CCCCHHHHHHHHHHHHHHHHhhcCC
Q 015531 350 AYIDGVDFVFLDSPLFRHLGNNIYGG---GREDILKRMVLFCKAAIEVKFYSRH 400 (405)
Q Consensus 350 ~~i~GV~vYFIdnp~fF~R~~~IYG~---~y~DNaeRFafFckAALEll~~L~~ 400 (405)
...+||++|||+++.||+|. ++|++ +|.||++||++||+||++++++++|
T Consensus 80 ~~~~~v~v~~i~~~~~f~r~-~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l~~ 132 (245)
T PF08323_consen 80 YPVDGVPVYFIDNPEYFDRP-GIYGDNGGDYPDNAERFAFFSRAALELLKKLGW 132 (245)
T ss_dssp EEETTEEEEEEESHHHHGSS-SSSBSTSSBHTTHHHHHHHHHHHHHHHHCTCT-
T ss_pred EEcCCccEEEecChhhcccc-ceeccCCCcchhHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999875 59986 6789999999999999999999866
No 4
>PLN02939 transferase, transferring glycosyl groups
Probab=99.95 E-value=1.3e-27 Score=261.73 Aligned_cols=123 Identities=28% Similarity=0.478 Sum_probs=101.7
Q ss_pred CCCceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCCCCCC--CC---ceEEEEEeCCcceEEEEEE
Q 015531 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQ--DT---GIRKRYRVDRQDIEVAYFQ 349 (405)
Q Consensus 275 ~n~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i~e~~--~~---~~~~~~~~~G~~~~v~V~~ 349 (405)
++.|||||||+||+||+||||||||+++||+||+++||+|+||||+|+++.... .. .....+.++|....+.||.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ 558 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT 558 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE
Confidence 456999999999999999999999999999999999999999999999885221 11 1122223556555689999
Q ss_pred EEeCCeEEEEEeCC---CCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHhhcCC
Q 015531 350 AYIDGVDFVFLDSP---LFRHLGNNIYGGGREDILKRMVLFCKAAIEVKFYSRH 400 (405)
Q Consensus 350 ~~i~GV~vYFIdnp---~fF~R~~~IYG~~y~DNaeRFafFckAALEll~~L~~ 400 (405)
..++||++|||+++ .||+|+ .+||+ .||++||+|||||+++++.+++|
T Consensus 559 ~~~~GV~vyfId~~~~~~fF~R~-~iYg~--~Dn~~RF~~FsrAaLe~~~~~~~ 609 (977)
T PLN02939 559 GTVEGLPVYFIEPQHPSKFFWRA-QYYGE--HDDFKRFSYFSRAALELLYQSGK 609 (977)
T ss_pred EEECCeeEEEEecCCchhccCCC-CCCCC--ccHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999964 388864 79974 69999999999999999988754
No 5
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.94 E-value=9.5e-27 Score=234.06 Aligned_cols=122 Identities=39% Similarity=0.571 Sum_probs=106.4
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCCCCCCC----CceEEEEEeCCcceEEEEEEEEeC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQD----TGIRKRYRVDRQDIEVAYFQAYID 353 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i~e~~~----~~~~~~~~~~G~~~~v~V~~~~i~ 353 (405)
|||||||+|++||+||||||||+++||+||+++||+|+||||.|+++..... ......+.+++..+.+.|+....+
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 8999999999999999999999999999999999999999999998754321 112223456777888999999999
Q ss_pred CeEEEEEeCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHhhcC
Q 015531 354 GVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEVKFYSR 399 (405)
Q Consensus 354 GV~vYFIdnp~fF~R~~~IYG~~y~DNaeRFafFckAALEll~~L~ 399 (405)
||++|||+++.||+|++.+|+++|.|+.+||++||+|+++++++++
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~ 126 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLG 126 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999875569998788999999999999999998764
No 6
>PLN02316 synthase/transferase
Probab=99.92 E-value=1.8e-24 Score=239.43 Aligned_cols=120 Identities=26% Similarity=0.464 Sum_probs=99.7
Q ss_pred CCceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCCCCCCCCceE--EEEEeCCcceEEEEEEEEeC
Q 015531 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIR--KRYRVDRQDIEVAYFQAYID 353 (405)
Q Consensus 276 n~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i~e~~~~~~~--~~~~~~G~~~~v~V~~~~i~ 353 (405)
++|||||||+||+||+|||||||||++||+||+++||+|+||||.|+++......... ..+.+++ ..+.|+....+
T Consensus 586 ~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~ 663 (1036)
T PLN02316 586 PPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGG--TEIKVWFGKVE 663 (1036)
T ss_pred CCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCC--EEEEEEEEEEC
Confidence 4499999999999999999999999999999999999999999999987532111122 2333444 46788999999
Q ss_pred CeEEEEEeCC-CCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHhhcCC
Q 015531 354 GVDFVFLDSP-LFRHLGNNIYGGGREDILKRMVLFCKAAIEVKFYSRH 400 (405)
Q Consensus 354 GV~vYFIdnp-~fF~R~~~IYG~~y~DNaeRFafFckAALEll~~L~~ 400 (405)
||++|||+++ .||.+ +.+|| |.||++||+|||+|++++++++++
T Consensus 664 GV~vyfl~~~~~~F~r-~~~Yg--~~Dd~~RF~~F~~Aale~l~~~~~ 708 (1036)
T PLN02316 664 GLSVYFLEPQNGMFWA-GCVYG--CRNDGERFGFFCHAALEFLLQSGF 708 (1036)
T ss_pred CcEEEEEeccccccCC-CCCCC--chhHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999998 49976 46897 579999999999999999987754
No 7
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.90 E-value=1.9e-23 Score=211.15 Aligned_cols=115 Identities=37% Similarity=0.474 Sum_probs=94.5
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCCCCCCCCceEEEEEeCCcceEEEEEEE--EeCCe
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQA--YIDGV 355 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i~e~~~~~~~~~~~~~G~~~~v~V~~~--~i~GV 355 (405)
|||||||+|++||+|+||||||+++||++|+++||+|+||||+|+.+.... ........+ ..+.|+.. ..+||
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~gv 75 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKL-RDAQVVGRL----DLFTVLFGHLEGDGV 75 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhh-cCceEEEEe----eeEEEEEEeEEcCCc
Confidence 899999999999999999999999999999999999999999999875321 111111112 12566665 45899
Q ss_pred EEEEEeCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHhhcCC
Q 015531 356 DFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEVKFYSRH 400 (405)
Q Consensus 356 ~vYFIdnp~fF~R~~~IYG~~y~DNaeRFafFckAALEll~~L~~ 400 (405)
++|||+++.||+|+ .+|+ |.|+.+||+|||+|++++++++++
T Consensus 76 ~v~~v~~~~~~~~~-~~y~--~~d~~~r~~~f~~~~~~~~~~~~~ 117 (466)
T PRK00654 76 PVYLIDAPHLFDRP-SGYG--YPDNGERFAFFSWAAAEFAEGLDP 117 (466)
T ss_pred eEEEEeCHHHcCCC-CCCC--CcChHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999864 6887 569999999999999999988754
No 8
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.89 E-value=1e-22 Score=202.92 Aligned_cols=120 Identities=40% Similarity=0.602 Sum_probs=100.5
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCCCCCCCCceE----EEEEeCCcceEEEEEEEEeCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIR----KRYRVDRQDIEVAYFQAYIDG 354 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i~e~~~~~~~----~~~~~~G~~~~v~V~~~~i~G 354 (405)
||||||+|++||+||||||||+++||+||+++||+|+||||.|+++......... ..+.+.+....+.+++...+|
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 6999999999999999999999999999999999999999999987643211111 123456777888999999999
Q ss_pred eEEEEEeCCCCCCCCCCcc---cCCCCCHHHHHHHHHHHHHHHHhhcC
Q 015531 355 VDFVFLDSPLFRHLGNNIY---GGGREDILKRMVLFCKAAIEVKFYSR 399 (405)
Q Consensus 355 V~vYFIdnp~fF~R~~~IY---G~~y~DNaeRFafFckAALEll~~L~ 399 (405)
|++|||++|.||.+. .+| +.+|.|++.||++||+|+++++++++
T Consensus 81 v~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~ 127 (476)
T cd03791 81 VPVYFLDNPDYFDRP-GLYDDSGYDYEDNAERFALFSRAALELLRRLG 127 (476)
T ss_pred ceEEEEcChHHcCCC-CCCCccCCCCccHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999754 444 23468999999999999999998874
No 9
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=2.4e-21 Score=201.17 Aligned_cols=120 Identities=33% Similarity=0.428 Sum_probs=93.6
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCCCCCCCCc----eEEEEEeCCcceEEEEEEEEeC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTG----IRKRYRVDRQDIEVAYFQAYID 353 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i~e~~~~~----~~~~~~~~G~~~~v~V~~~~i~ 353 (405)
|||++||+|++||+||||||||+++||++|+++|++|+|+||.|+.+.+..... ....+.+++....+.+.....+
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 899999999999999999999999999999999999999999999554332111 1112234454444455554444
Q ss_pred -CeEEEEEeCCCCCCCC-CCcccCCCCCHHHHHHHHHHHHHHHHhhcC
Q 015531 354 -GVDFVFLDSPLFRHLG-NNIYGGGREDILKRMVLFCKAAIEVKFYSR 399 (405)
Q Consensus 354 -GV~vYFIdnp~fF~R~-~~IYG~~y~DNaeRFafFckAALEll~~L~ 399 (405)
||++|||++|.||+|. ...|+ +.||.+||++||+|++++++...
T Consensus 81 ~~v~~~lid~~~~f~r~~~~~~~--~~d~~~Rf~~F~~a~~~~~~~~~ 126 (487)
T COG0297 81 GGVDLYLIDNPALFKRPDSTLYG--YYDNAERFAFFSLAAAELAPLGL 126 (487)
T ss_pred CCCcEEEecChhhcCccccccCC--CCcHHHHHHHHHHHHHHHhhhcC
Confidence 4999999999999873 23454 67999999999999999997665
No 10
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=98.26 E-value=7.5e-06 Score=88.08 Aligned_cols=121 Identities=21% Similarity=0.313 Sum_probs=89.4
Q ss_pred EEEEecccc-----cccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCC-CC----C-C--C----------CC------
Q 015531 280 VILVAAECG-----PWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN-YA----E-P--Q----------DT------ 330 (405)
Q Consensus 280 ILfVSSE~a-----PfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~-i~----e-~--~----------~~------ 330 (405)
|.+.|+|+. |. =.||||=.+|..=++++.+|..+..+-=+|+. +. . . + ..
T Consensus 1 ~ayf~~E~g~~~~~p~-ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~ 79 (601)
T TIGR02094 1 VAYFSMEYGLHESLPI-YSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVL 79 (601)
T ss_pred CeEEeeccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEe
Confidence 356666643 54 57999999999999999999999999888873 11 0 0 0 00
Q ss_pred -----ceEEEEEeCCcceEEEEEEEEeCCeEEEEEeCCC----CCCCCC--CcccCCCCCHHHHHHHHHHHHHHHHhhcC
Q 015531 331 -----GIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPL----FRHLGN--NIYGGGREDILKRMVLFCKAAIEVKFYSR 399 (405)
Q Consensus 331 -----~~~~~~~~~G~~~~v~V~~~~i~GV~vYFIdnp~----fF~R~~--~IYG~~y~DNaeRFafFckAALEll~~L~ 399 (405)
.+...+.+.|....+++|+...++|++|||+++. +|+|.. .+|+++..+...||+|||+|+++++++++
T Consensus 80 ~~~g~~~~~~v~i~g~~~~~rlw~~~~~~v~lylld~~~~~n~~~~R~it~~LY~~D~~~R~~Qe~fl~~a~l~~l~~l~ 159 (601)
T TIGR02094 80 DTDGKWLKISVRIRGRDVYAKVWRVQVGRVPLYLLDTNIPENSEDDRWITGRLYGGDKEMRIAQEIVLGIGGVRALRALG 159 (601)
T ss_pred cCCCCeEEEEEecCCcEEEEEEEEEEeCCCCEEEecCCCcccchhhcCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0112345677778889999988999999999997 887642 37986544444555999999999999887
Q ss_pred CC
Q 015531 400 HK 401 (405)
Q Consensus 400 ~g 401 (405)
+.
T Consensus 160 ~~ 161 (601)
T TIGR02094 160 ID 161 (601)
T ss_pred CC
Confidence 63
No 11
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=97.96 E-value=8.7e-05 Score=82.26 Aligned_cols=118 Identities=24% Similarity=0.333 Sum_probs=91.5
Q ss_pred EEEEecccc-----cccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCC-CC----C-C---------C---CC------
Q 015531 280 VILVAAECG-----PWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN-YA----E-P---------Q---DT------ 330 (405)
Q Consensus 280 ILfVSSE~a-----PfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~-i~----e-~---------~---~~------ 330 (405)
|.+.|+|+. |. =.||||=.+|+-=|+++.+|..+.-|-=+|+. +. . . . ..
T Consensus 88 ~aYFs~E~gl~~~lpi-YsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~~ 166 (778)
T cd04299 88 AAYFSMEFGLHESLPI-YSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPVR 166 (778)
T ss_pred eEEeccccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEEe
Confidence 449999964 54 57999999999999999999999999888873 11 0 0 0 00
Q ss_pred -----ceEEEEEeCCcceEEEEEEEEeCCeEEEEEeCCC----CCCCCC--CcccCCCCCHHHH---HHHHHHHHHHHHh
Q 015531 331 -----GIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPL----FRHLGN--NIYGGGREDILKR---MVLFCKAAIEVKF 396 (405)
Q Consensus 331 -----~~~~~~~~~G~~~~v~V~~~~i~GV~vYFIdnp~----fF~R~~--~IYG~~y~DNaeR---FafFckAALEll~ 396 (405)
.+...+.+.|....+++|+..+++|++||||++. +|+|.- .+||+ |+..| |+|||+|++++++
T Consensus 167 ~~~G~~~~v~v~l~g~~v~~rvw~~~vg~v~lylLDtd~~~n~~~~R~iT~~LYg~---D~~~Rl~Qe~~Lg~agl~~Lr 243 (778)
T cd04299 167 DADGEPVRVSVELPGRTVYARVWKAQVGRVPLYLLDTDIPENSPDDRGITDRLYGG---DQETRIQQEILLGIGGVRALR 243 (778)
T ss_pred cCCCCeEEEEEeeCCCceEEEEEEEEcCCCCEEEecCCccccchhhcccccCCCCC---cHHHHHHHHHHHHHHHHHHHH
Confidence 1123455778788899999999999999999998 476541 37875 68999 5999999999999
Q ss_pred hcCCC
Q 015531 397 YSRHK 401 (405)
Q Consensus 397 ~L~~g 401 (405)
++++.
T Consensus 244 ~lg~~ 248 (778)
T cd04299 244 ALGIK 248 (778)
T ss_pred HhCCC
Confidence 88763
No 12
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=96.33 E-value=0.0094 Score=60.89 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=42.8
Q ss_pred CCCceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 275 ~n~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
++.|||++++ |..||...||.+-.+..|.++|+++||+|.|+++..+
T Consensus 56 ~~~mrI~~~~-~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~ 102 (465)
T PLN02871 56 SRPRRIALFV-EPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEG 102 (465)
T ss_pred CCCceEEEEE-CCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 5679999987 8889999999999999999999999999999998654
No 13
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=96.26 E-value=0.0077 Score=56.18 Aligned_cols=46 Identities=35% Similarity=0.457 Sum_probs=42.1
Q ss_pred ceEEEEeccccc--ccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCC
Q 015531 278 MNVILVAAECGP--WSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (405)
Q Consensus 278 MKILfVSSE~aP--faKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~ 323 (405)
|||++|+..+.| --..||..-++..|.++|.++||+|.|+.|....
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~ 48 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSK 48 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCC
Confidence 899999999876 5678999999999999999999999999988764
No 14
>PRK10307 putative glycosyl transferase; Provisional
Probab=95.98 E-value=0.0091 Score=59.21 Aligned_cols=41 Identities=29% Similarity=0.554 Sum_probs=38.7
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~ 320 (405)
|||++|+..+.|- .||.+..+..|.++|.++||+|.|++|.
T Consensus 1 mkIlii~~~~~P~--~~g~~~~~~~l~~~L~~~G~~V~vit~~ 41 (412)
T PRK10307 1 MKILVYGINYAPE--LTGIGKYTGEMAEWLAARGHEVRVITAP 41 (412)
T ss_pred CeEEEEecCCCCC--ccchhhhHHHHHHHHHHCCCeEEEEecC
Confidence 8999999999997 6999999999999999999999999964
No 15
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=95.38 E-value=0.025 Score=54.67 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=36.6
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
||||||.+. ...||..=++..|.++|+++||+|.|+++.++
T Consensus 1 mkIl~~~~~----~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~ 41 (392)
T cd03805 1 LRVAFIHPD----LGIGGAERLVVDAALALQSRGHEVTIYTSHHD 41 (392)
T ss_pred CeEEEECCC----CCCchHHHHHHHHHHHHHhCCCeEEEEcCCCC
Confidence 899999654 45899999999999999999999999998764
No 16
>PLN02846 digalactosyldiacylglycerol synthase
Probab=94.59 E-value=0.042 Score=58.06 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=42.1
Q ss_pred CCceEEEEecccccccccccHhHHHhhHHHHHHHCC-CeEEEEeeCCC
Q 015531 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRG-HRVMVVAPHYG 322 (405)
Q Consensus 276 n~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~G-hdV~VIlP~Y~ 322 (405)
+.|||++||-=+.|+ ++|.+--+.-+...|+++| |+|.||.|+|.
T Consensus 3 ~~mrIaivTdt~lP~--vnGva~s~~~~a~~L~~~G~heV~vvaP~~~ 48 (462)
T PLN02846 3 KKQHIAIFTTASLPW--MTGTAVNPLFRAAYLAKDGDREVTLVIPWLS 48 (462)
T ss_pred CCCEEEEEEcCCCCC--CCCeeccHHHHHHHHHhcCCcEEEEEecCCc
Confidence 469999999999999 6899999999999999999 79999999996
No 17
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=94.23 E-value=0.052 Score=49.85 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=39.5
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i 324 (405)
|||||+.-+.|.. ||.+..+..|.++|+++||+|.|+.+.....
T Consensus 1 kIl~i~~~~~~~~--~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~ 44 (394)
T cd03794 1 KILILSQYFPPEL--GGGAFRTTELAEELVKRGHEVTVITGSPNYP 44 (394)
T ss_pred CEEEEecccCCcc--CCcceeHHHHHHHHHhCCceEEEEecCCCcc
Confidence 6999999888876 9999999999999999999999999886543
No 18
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=93.98 E-value=0.1 Score=47.14 Aligned_cols=44 Identities=39% Similarity=0.586 Sum_probs=40.7
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i 324 (405)
||++++....|. .||.+.++..|.++|++.||+|.++.+.....
T Consensus 1 kI~ii~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~ 44 (374)
T cd03801 1 KILLVTPEYPPS--VGGAERHVLELARALAARGHEVTVLTPGDGGL 44 (374)
T ss_pred CeeEEecccCCc--cCcHhHHHHHHHHHHHhcCceEEEEecCCCCC
Confidence 699999999888 99999999999999999999999999987654
No 19
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=93.34 E-value=0.12 Score=47.62 Aligned_cols=44 Identities=30% Similarity=0.474 Sum_probs=39.8
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i 324 (405)
|||+++..+.|. .||.+..+..|.++|+++||+|.|+.|.+...
T Consensus 1 kil~~~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~ 44 (374)
T cd03817 1 KIGIFTDTYLPQ--VNGVATSIRRLAEELEKRGHEVYVVAPSYPGA 44 (374)
T ss_pred CeeEeehhccCC--CCCeehHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 699999988775 69999999999999999999999999988754
No 20
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=93.28 E-value=0.1 Score=42.90 Aligned_cols=31 Identities=42% Similarity=0.626 Sum_probs=25.7
Q ss_pred ccHhHHHhhHHHHHHHCCCeEEEEeeCCCCC
Q 015531 294 GGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (405)
Q Consensus 294 GGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i 324 (405)
||.+-++..|.++|+++||+|.|+.|.+...
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 31 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPE 31 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GG
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence 8999999999999999999999999988754
No 21
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.27 E-value=0.11 Score=47.97 Aligned_cols=43 Identities=28% Similarity=0.362 Sum_probs=39.3
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~ 323 (405)
||++|+....|.. ||.+..+..|.++|+++||+|.|+.+....
T Consensus 1 kIl~i~~~~~p~~--~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 43 (364)
T cd03814 1 RIAIVTDTFLPQV--NGVVRTLQRLVEHLRARGHEVLVIAPGPFR 43 (364)
T ss_pred CeEEEecccCccc--cceehHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 6999999998874 999999999999999999999999988653
No 22
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=92.59 E-value=0.13 Score=48.99 Aligned_cols=39 Identities=46% Similarity=0.592 Sum_probs=34.6
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y 321 (405)
|||++++ .|. .||..-++..|.++|+++||+|.|+....
T Consensus 1 mki~~~~---~p~--~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 1 MKIGIVC---YPT--YGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred CceeEEE---EeC--CCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 8999997 353 69999999999999999999999998754
No 23
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=92.57 E-value=0.16 Score=46.68 Aligned_cols=44 Identities=34% Similarity=0.413 Sum_probs=38.9
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i 324 (405)
|||||++.+. -..||...++..|.++|+++||+|.|+.+.....
T Consensus 1 kIl~i~~~~~--~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~ 44 (375)
T cd03821 1 KILHVIPSFD--PKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGD 44 (375)
T ss_pred CeEEEcCCCC--cccCCeehHHHHHHHHHHhcCCcEEEEecCCCCc
Confidence 6999998876 4689999999999999999999999999877643
No 24
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=92.46 E-value=0.18 Score=47.28 Aligned_cols=42 Identities=31% Similarity=0.379 Sum_probs=38.7
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
|||+|+..+.|- .||.+.++..|.++|+++||+|.|+.+.-.
T Consensus 1 kil~i~~~~~p~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (357)
T cd03795 1 RVLHVGKFYPPD--RGGIEQVIRDLAEGLAARGIEVAVLCASPE 42 (357)
T ss_pred CeeEecCCCCCC--CCcHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 799999998887 899999999999999999999999988654
No 25
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=92.26 E-value=0.21 Score=49.67 Aligned_cols=42 Identities=31% Similarity=0.536 Sum_probs=38.8
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
||++|+.=+.|. .||..-.+..|.++|+++||+|.|++|.++
T Consensus 1 kI~~v~~~~~p~--~GG~e~~~~~la~~L~~~G~~V~v~~~~~~ 42 (398)
T cd03796 1 RICMVSDFFYPN--LGGVETHIYQLSQCLIKRGHKVVVITHAYG 42 (398)
T ss_pred CeeEEeeccccc--cccHHHHHHHHHHHHHHcCCeeEEEeccCC
Confidence 799999888895 699999999999999999999999999765
No 26
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=91.97 E-value=0.31 Score=44.07 Aligned_cols=42 Identities=31% Similarity=0.583 Sum_probs=38.3
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~ 323 (405)
||++++.-..| .||..-++..|.++|++.||+|.|+.+....
T Consensus 1 kI~i~~~~~~~---~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 42 (348)
T cd03820 1 KILFVIPSLGN---AGGAERVLSNLANALAEKGHEVTIISLDKGE 42 (348)
T ss_pred CeEEEeccccC---CCChHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 68999987777 8999999999999999999999999998775
No 27
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=91.87 E-value=0.26 Score=45.40 Aligned_cols=44 Identities=36% Similarity=0.490 Sum_probs=39.0
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~ 323 (405)
|||+++.-..|.. .||-.-++..|.++|+++||+|.|+.+....
T Consensus 1 kIl~i~~~~~~~~-~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 44 (359)
T cd03823 1 RILVVNHLYPPRS-VGGAEVVAHDLAEALAKRGHEVAVLTAGEDP 44 (359)
T ss_pred CeeEEcccCCccc-ccchHHHHHHHHHHHHhcCCceEEEeCCCCC
Confidence 6899999887764 7999999999999999999999999987654
No 28
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=91.86 E-value=0.24 Score=46.03 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=41.0
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYA 325 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i~ 325 (405)
||++++.-..|. +.||.+.++..|.++|++.||+|.++++......
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~ 46 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAPGL 46 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCcccc
Confidence 688888888876 8899999999999999999999999999987543
No 29
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=91.36 E-value=0.33 Score=45.68 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=37.0
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i 324 (405)
|||||++.- .-.||.+-++..|.++|.++||+|.|+.+....+
T Consensus 1 MkIl~~~~~----~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~ 43 (365)
T cd03825 1 MKVLHLNTS----DISGGAARAAYRLHRALQAAGVDSTMLVQEKKAL 43 (365)
T ss_pred CeEEEEecC----CCCCcHHHHHHHHHHHHHhcCCceeEEEeecchh
Confidence 899999763 3449999999999999999999999999876533
No 30
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.27 E-value=0.3 Score=40.80 Aligned_cols=36 Identities=39% Similarity=0.545 Sum_probs=29.9
Q ss_pred ccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCCC
Q 015531 290 WSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYA 325 (405)
Q Consensus 290 faKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i~ 325 (405)
+...||.+-++..|.++|+++||+|.|+.|......
T Consensus 8 ~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~ 43 (177)
T PF13439_consen 8 LPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPI 43 (177)
T ss_dssp TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-
T ss_pred CCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccc
Confidence 345899999999999999999999999999987654
No 31
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=91.05 E-value=0.35 Score=45.58 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=37.4
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
||++|+++.+|- ..||...++..|.++|+++||+|.|+.+.-.
T Consensus 1 ~i~~i~~~~~~~-~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~ 43 (363)
T cd04955 1 KIAIIGTRGIPA-KYGGFETFVEELAPRLVARGHEVTVYCRSPY 43 (363)
T ss_pred CeEEEecCcCCc-ccCcHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 688998887654 4699999999999999999999999998644
No 32
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=90.77 E-value=0.37 Score=44.09 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=35.8
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y 321 (405)
||+||++.+.+ ||.+.++..|.++|++.|++|.++...-
T Consensus 1 ~i~~i~~~~~~----gG~~~~~~~l~~~l~~~~~~v~~~~~~~ 39 (365)
T cd03807 1 KVLHVITGLDV----GGAERMLVRLLKGLDRDRFEHVVISLTD 39 (365)
T ss_pred CeEEEEeeccC----ccHHHHHHHHHHHhhhccceEEEEecCc
Confidence 69999998877 9999999999999999999999998754
No 33
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=90.36 E-value=0.35 Score=46.74 Aligned_cols=43 Identities=30% Similarity=0.264 Sum_probs=36.3
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
|||++|+..+.|. +.||.+..+..|.++|+++ ++|.|+....+
T Consensus 1 mkI~~i~~~~~p~-~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~ 43 (388)
T TIGR02149 1 MKVTVLTREYPPN-VYGGAGVHVEELTRELARL-MDVDVRCFGDQ 43 (388)
T ss_pred CeeEEEecccCcc-ccccHhHHHHHHHHHHHHh-cCeeEEcCCCc
Confidence 8999999988776 5699999999999999987 77777765433
No 34
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=89.97 E-value=0.31 Score=47.86 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=36.7
Q ss_pred EEEEeccccccc-----ccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 280 VILVAAECGPWS-----KTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 280 ILfVSSE~aPfa-----KTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
|++|+-...|+. ..||..-++..|.++|+++||+|.|+.+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G~~V~v~~~~~~ 48 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRGIEVDIFTRATR 48 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCCCEEEEEecccC
Confidence 466777777755 5799999999999999999999999998754
No 35
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=89.30 E-value=0.46 Score=46.96 Aligned_cols=36 Identities=39% Similarity=0.537 Sum_probs=31.2
Q ss_pred ceEEEEecccccccccccHhHHHhh--HHHHHHHCCCeEEEEeeCC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGA--LPKALARRGHRVMVVAPHY 321 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgS--LPKALa~~GhdV~VIlP~Y 321 (405)
|||||++. |+.|||.-- |.++|+++||+|+++++-+
T Consensus 1 mrIl~~~~--------p~~GHv~P~l~la~~L~~rGh~V~~~t~~~ 38 (401)
T cd03784 1 MRVLITTI--------GSRGDVQPLVALAWALRAAGHEVRVATPPE 38 (401)
T ss_pred CeEEEEeC--------CCcchHHHHHHHHHHHHHCCCeEEEeeCHh
Confidence 89999998 889999764 5677899999999999875
No 36
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=89.21 E-value=0.59 Score=42.27 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=37.0
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i 324 (405)
|||+++.... .||...++..|.++|++.||+|.|+.+.....
T Consensus 1 kIl~~~~~~~----~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~ 42 (353)
T cd03811 1 KILFVIPSLG----GGGAERVLLNLANGLDKRGYDVTLVVLRDEGD 42 (353)
T ss_pred CeEEEeeccc----CCCcchhHHHHHHHHHhcCceEEEEEcCCCCc
Confidence 6889888665 79999999999999999999999999877643
No 37
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=87.83 E-value=0.67 Score=39.90 Aligned_cols=37 Identities=51% Similarity=0.640 Sum_probs=32.8
Q ss_pred EEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 280 VILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 280 ILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
|++++....| ..||.+-++..|.++|+++||+|.|+.
T Consensus 1 i~~i~~~~~~--~~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 1 ILLVSTPLLP--GGGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CeeeccccCC--CCCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 5667776666 679999999999999999999999999
No 38
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=87.77 E-value=0.65 Score=43.60 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=34.2
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y 321 (405)
|||++++.. +.||..-++..|.++|+++||+|.|+.+.-
T Consensus 1 ~il~~~~~~----~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 1 KILYVITGL----GLGGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred CeEEEecCC----CCCCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 588887764 689999999999999999999999998654
No 39
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=87.36 E-value=1.1 Score=37.78 Aligned_cols=28 Identities=46% Similarity=0.660 Sum_probs=22.5
Q ss_pred ccHhHHHh--hHHHHHHHCCCeEEEEeeCC
Q 015531 294 GGLGDVAG--ALPKALARRGHRVMVVAPHY 321 (405)
Q Consensus 294 GGLGDVVg--SLPKALa~~GhdV~VIlP~Y 321 (405)
|.-|||-- +|.++|+++||+|++.+|..
T Consensus 7 Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~ 36 (139)
T PF03033_consen 7 GTRGHVYPFLALARALRRRGHEVRLATPPD 36 (139)
T ss_dssp SSHHHHHHHHHHHHHHHHTT-EEEEEETGG
T ss_pred CChhHHHHHHHHHHHHhccCCeEEEeeccc
Confidence 88899865 56789999999999888753
No 40
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=87.30 E-value=0.96 Score=42.04 Aligned_cols=41 Identities=29% Similarity=0.386 Sum_probs=35.4
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
||+||+. ..|. .||...++..|.++|++.||+|.|+.....
T Consensus 1 kI~~v~~-~~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (366)
T cd03822 1 RIALVSP-YPPR--KCGIATFTTDLVNALSARGPDVLVVSVAAL 41 (366)
T ss_pred CeEEecC-CCCC--CCcHHHHHHHHHHHhhhcCCeEEEEEeecc
Confidence 6999976 3454 799999999999999999999999987655
No 41
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=87.01 E-value=0.87 Score=41.40 Aligned_cols=39 Identities=33% Similarity=0.382 Sum_probs=35.1
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~ 323 (405)
|||+|+.. .||....+..|.++|.++||+|.|+.+.-..
T Consensus 1 kIl~i~~~------~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 39 (359)
T cd03808 1 KILHIVTV------DGGLYSFRLPLIKALRAAGYEVHVVAPPGDE 39 (359)
T ss_pred CeeEEEec------chhHHHHHHHHHHHHHhcCCeeEEEecCCCc
Confidence 68999987 7999999999999999999999999987554
No 42
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=86.20 E-value=0.84 Score=43.74 Aligned_cols=44 Identities=30% Similarity=0.446 Sum_probs=35.3
Q ss_pred eEEEEecccccccc-----cccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 279 NVILVAAECGPWSK-----TGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 279 KILfVSSE~aPfaK-----TGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
||+|+.-=.+|+++ +||..-++..|.++|+++||+|.|+.+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~ 49 (398)
T cd03800 1 RIALISLHGSPLAQPGGADTGGQNVYVLELARALARLGHEVDIFTRRID 49 (398)
T ss_pred CeEEEeccccccccCCCCCCCceeehHHHHHHHHhccCceEEEEEecCC
Confidence 46666655556554 569999999999999999999999987654
No 43
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=85.25 E-value=1.3 Score=42.42 Aligned_cols=39 Identities=31% Similarity=0.428 Sum_probs=30.0
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
|||++++.|.. |.+- ....|.++|.++||+|.|+.+.++
T Consensus 1 ~~i~~~~g~~~-----g~~~-~~~~La~~L~~~g~eV~vv~~~~~ 39 (348)
T TIGR01133 1 KKVVLAAGGTG-----GHIF-PALAVAEELIKRGVEVLWLGTKRG 39 (348)
T ss_pred CeEEEEeCccH-----HHHh-HHHHHHHHHHhCCCEEEEEeCCCc
Confidence 79999998652 3233 446899999999999999987543
No 44
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=84.76 E-value=1.4 Score=43.22 Aligned_cols=42 Identities=10% Similarity=0.222 Sum_probs=36.0
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHC--CCeEEEEeeCCC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARR--GHRVMVVAPHYG 322 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~--GhdV~VIlP~Y~ 322 (405)
|||+|++. ..| ..||..-++..|.++|.++ |++|.|+.|...
T Consensus 1 mkI~~~~~-~~~--~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~ 44 (359)
T PRK09922 1 MKIAFIGE-AVS--GFGGMETVISNVINTFEESKINCEMFFFCRNDK 44 (359)
T ss_pred CeeEEecc-ccc--CCCchhHHHHHHHHHhhhcCcceeEEEEecCCC
Confidence 89999975 333 4599999999999999999 899999998654
No 45
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=82.37 E-value=1.6 Score=41.12 Aligned_cols=41 Identities=10% Similarity=0.177 Sum_probs=36.7
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~ 323 (405)
|||+|+.-. ..||..-.+..|.++|++.|++|.++++....
T Consensus 1 kIl~~~~~~----~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~ 41 (358)
T cd03812 1 KILHIVGTM----NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEE 41 (358)
T ss_pred CEEEEeCCC----CCccHHHHHHHHHHhcCccceEEEEEEeCCCC
Confidence 689988855 68999999999999999999999999997654
No 46
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=82.34 E-value=2.2 Score=43.61 Aligned_cols=33 Identities=33% Similarity=0.341 Sum_probs=29.4
Q ss_pred ccccccHhHHHhhHHHHHHHCCC--eEEEEeeCCC
Q 015531 290 WSKTGGLGDVAGALPKALARRGH--RVMVVAPHYG 322 (405)
Q Consensus 290 faKTGGLGDVVgSLPKALa~~Gh--dV~VIlP~Y~ 322 (405)
+-.+||..-.+..|.++|+++|| +|.|+++.|.
T Consensus 22 ~p~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~ 56 (439)
T TIGR02472 22 DADTGGQTKYVLELARALARRSEVEQVDLVTRLIK 56 (439)
T ss_pred CCCCCCcchHHHHHHHHHHhCCCCcEEEEEecccc
Confidence 45689999999999999999997 9999997664
No 47
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=79.40 E-value=2.7 Score=41.10 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=34.0
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y 321 (405)
||+|++.=. ..||..-++..|.++|.+.||+|.+++|.=
T Consensus 1 ki~~~~~~~----~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~ 39 (372)
T cd03792 1 KVLHVNSTP----YGGGVAEILHSLVPLMRDLGVDTRWEVIKG 39 (372)
T ss_pred CeEEEeCCC----CCCcHHHHHHHHHHHHHHcCCCceEEecCC
Confidence 688887643 579999999999999999999999999843
No 48
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=75.31 E-value=4.4 Score=39.94 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=36.6
Q ss_pred CCceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 276 n~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
.+||||++|+-+ -||=.=.+.+|.++|.++|++|.++.|.+.
T Consensus 3 ~~~rili~t~~~-----G~GH~~~a~al~~~l~~~g~~~~~~~d~~~ 44 (380)
T PRK13609 3 KNPKVLILTAHY-----GNGHVQVAKTLEQTFRQKGIKDVIVCDLFG 44 (380)
T ss_pred CCCeEEEEEcCC-----CchHHHHHHHHHHHHHhcCCCcEEEEEhHH
Confidence 358999999865 349999999999999999999888989885
No 49
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=74.67 E-value=4.6 Score=33.73 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=30.1
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~ 323 (405)
|||+|+....+| +..+.++|++.|++|.|+.+..+.
T Consensus 1 KIl~i~~~~~~~---------~~~~~~~L~~~g~~V~ii~~~~~~ 36 (139)
T PF13477_consen 1 KILLIGNTPSTF---------IYNLAKELKKRGYDVHIITPRNDY 36 (139)
T ss_pred CEEEEecCcHHH---------HHHHHHHHHHCCCEEEEEEcCCCc
Confidence 689998877654 568899999999999999996553
No 50
>PRK10125 putative glycosyl transferase; Provisional
Probab=73.90 E-value=5.3 Score=40.91 Aligned_cols=41 Identities=22% Similarity=0.168 Sum_probs=35.9
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
||||+|-. -...||=+=++-.|.+.|.++||+|.|+.=+-.
T Consensus 1 mkil~i~~----~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~ 41 (405)
T PRK10125 1 MNILQFNV----RLAEGGAAGVALDLHQRALQQGLASHFVYGYGK 41 (405)
T ss_pred CeEEEEEe----eecCCchhHHHHHHHHHHHhcCCeEEEEEecCC
Confidence 89999876 357799999999999999999999999876543
No 51
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=72.70 E-value=5.5 Score=36.25 Aligned_cols=42 Identities=33% Similarity=0.468 Sum_probs=33.6
Q ss_pred EEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 280 VILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 280 ILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
||+++.- +|....||-+-++..|.++|++.|++|.|+.+.-.
T Consensus 1 iLii~~~-~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~ 42 (377)
T cd03798 1 ILVISSL-YPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPW 42 (377)
T ss_pred CeEeccC-CCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCC
Confidence 4566554 44435699999999999999999999999998654
No 52
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=72.54 E-value=5.9 Score=38.56 Aligned_cols=40 Identities=28% Similarity=0.393 Sum_probs=31.4
Q ss_pred CceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 277 ~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
+|||++++.+. ||=--++-.|.++|.++||+|.|+.+.++
T Consensus 1 ~~~i~i~~~g~------gG~~~~~~~la~~L~~~g~ev~vv~~~~~ 40 (357)
T PRK00726 1 MKKILLAGGGT------GGHVFPALALAEELKKRGWEVLYLGTARG 40 (357)
T ss_pred CcEEEEEcCcc------hHhhhHHHHHHHHHHhCCCEEEEEECCCc
Confidence 48999988643 44333667999999999999999998663
No 53
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=69.53 E-value=7.8 Score=36.29 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=32.5
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~ 323 (405)
|||||+.-.-|. -.-++..+-.+|.++||+|.|+.+....
T Consensus 1 ki~~~~~~~~~~-----~~~~~~~~~~~L~~~g~~v~v~~~~~~~ 40 (355)
T cd03799 1 KIAYLVKEFPRL-----SETFILREILALEAAGHEVEIFSLRPPE 40 (355)
T ss_pred CEEEECCCCCCc-----chHHHHHHHHHHHhCCCeEEEEEecCcc
Confidence 699999765333 4467899999999999999999987764
No 54
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=69.18 E-value=5.4 Score=37.59 Aligned_cols=33 Identities=33% Similarity=0.492 Sum_probs=28.7
Q ss_pred cccccccHhHHHhhHHHHHHHCCCeEEEEeeCC
Q 015531 289 PWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (405)
Q Consensus 289 PfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y 321 (405)
|-...||...++..|.++|+++||+|.|+.|..
T Consensus 5 ~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~ 37 (355)
T cd03819 5 PALESGGVERGTLELARALVERGHRSLVASAGG 37 (355)
T ss_pred hhhccCcHHHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 444559999999999999999999999998753
No 55
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=61.62 E-value=12 Score=33.03 Aligned_cols=86 Identities=19% Similarity=0.127 Sum_probs=42.7
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCCCCCCCCceEEEEEeCCc-ceEEEEE---EEEeC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQ-DIEVAYF---QAYID 353 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i~e~~~~~~~~~~~~~G~-~~~v~V~---~~~i~ 353 (405)
|||+||- -|+.+.--=.|=..+|..+.+++||+|.++.|.==.+.+..-......+.+.+. ..-+.+- .....
T Consensus 1 Mki~fvm---Dpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~~~~g~~~a~~~~v~~~~~~~~~~~~~~~~~~~L~ 77 (119)
T PF02951_consen 1 MKIAFVM---DPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLSLRDGRVWARARPVEVKDDPKDWYKLGEEEEIPLD 77 (119)
T ss_dssp -EEEEEE---S-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEEEETTEEEEEEEEEEE-S-SS--EEEEEEEEEEGG
T ss_pred CeEEEEe---CCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEEEECCEEEEEEEEEEEecCCCCcEecCCcEEcccc
Confidence 7888885 466555555789999999999999999999997433322111111112233221 1111111 12345
Q ss_pred CeEEEEEeCCCCC
Q 015531 354 GVDFVFLDSPLFR 366 (405)
Q Consensus 354 GV~vYFIdnp~fF 366 (405)
.++++|+..+-=|
T Consensus 78 ~~DvvlmRkDPPf 90 (119)
T PF02951_consen 78 DFDVVLMRKDPPF 90 (119)
T ss_dssp GSSEEEEE--S--
T ss_pred cCCEEEEecCCCC
Confidence 7889988766444
No 56
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=59.47 E-value=11 Score=42.81 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=35.1
Q ss_pred CceEEEEecccc----c---ccccccHhHHHhhHHHH--------HHHCCC----eEEEEeeCCC
Q 015531 277 VMNVILVAAECG----P---WSKTGGLGDVAGALPKA--------LARRGH----RVMVVAPHYG 322 (405)
Q Consensus 277 ~MKILfVSSE~a----P---faKTGGLGDVVgSLPKA--------La~~Gh----dV~VIlP~Y~ 322 (405)
.|||+|||.+.+ | ..=|||..--|..|++| |+++|| +|.|++-...
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~ 319 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIP 319 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCC
Confidence 389999999983 2 12379998788888887 579999 6678887654
No 57
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=58.16 E-value=14 Score=34.64 Aligned_cols=28 Identities=29% Similarity=0.559 Sum_probs=24.2
Q ss_pred cccHhHHHhhHHHHHHHCCCeEEEEeeC
Q 015531 293 TGGLGDVAGALPKALARRGHRVMVVAPH 320 (405)
Q Consensus 293 TGGLGDVVgSLPKALa~~GhdV~VIlP~ 320 (405)
.||.|-+-++|.+.|++.||+|.++-..
T Consensus 6 IGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 6 LGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred EcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3778999999999999999999887553
No 58
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=57.85 E-value=16 Score=37.43 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=36.0
Q ss_pred eEEEEecccccccccccHh----HHHhhHHHHHHHCCCeEEEEeeCCCC
Q 015531 279 NVILVAAECGPWSKTGGLG----DVAGALPKALARRGHRVMVVAPHYGN 323 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLG----DVVgSLPKALa~~GhdV~VIlP~Y~~ 323 (405)
.|.+.++-..|..+-+..+ ++..+|-.|.+++|++|+|++|.++.
T Consensus 231 ~I~I~t~yf~P~~~~d~~~~~~~~i~~AL~~AAa~RGV~VRILv~~~~~ 279 (369)
T PHA03003 231 SIDLELLSLVPVIREDDKTTYWPDIYNALIRAAINRGVKVRLLVGSWKK 279 (369)
T ss_pred EEEEEEeccccEEeeCCCCccHHHHHHHHHHHHHcCCCEEEEEEecCCc
Confidence 6889999888877666543 67777777777899999999998653
No 59
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=55.83 E-value=15 Score=36.12 Aligned_cols=34 Identities=38% Similarity=0.663 Sum_probs=30.0
Q ss_pred ceEEEEecccccccccccHh--HHHhhHHHHHHHCCCeEEEE
Q 015531 278 MNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVV 317 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLG--DVVgSLPKALa~~GhdV~VI 317 (405)
|||+.|.+ -.||.| -++.+|+-+|+++|..|-+|
T Consensus 1 M~~iai~s------~kGGvG~TTltAnLA~aL~~~G~~VlaI 36 (243)
T PF06564_consen 1 MKVIAIVS------PKGGVGKTTLTANLAWALARLGESVLAI 36 (243)
T ss_pred CcEEEEec------CCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 78888887 568888 58999999999999999887
No 60
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=55.60 E-value=11 Score=37.45 Aligned_cols=35 Identities=29% Similarity=0.529 Sum_probs=26.1
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
|||||..-+ | |-+ ..|.++|+++||+|.|+++.=.
T Consensus 1 ~il~~~~~~-p----~~~----~~la~~L~~~G~~v~~~~~~~~ 35 (396)
T cd03818 1 RILFVHQNF-P----GQF----RHLAPALAAQGHEVVFLTEPNA 35 (396)
T ss_pred CEEEECCCC-c----hhH----HHHHHHHHHCCCEEEEEecCCC
Confidence 578876544 3 222 3599999999999999998765
No 61
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=55.15 E-value=12 Score=38.78 Aligned_cols=37 Identities=35% Similarity=0.590 Sum_probs=30.1
Q ss_pred CceEEEEecccccccccccHhHHHhh--HHHHHHHCCCeEEEEeeCC
Q 015531 277 VMNVILVAAECGPWSKTGGLGDVAGA--LPKALARRGHRVMVVAPHY 321 (405)
Q Consensus 277 ~MKILfVSSE~aPfaKTGGLGDVVgS--LPKALa~~GhdV~VIlP~Y 321 (405)
+|||+|++- |.+|+|... |.++|.++||+|..+.+..
T Consensus 1 ~mkil~~~~--------~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~ 39 (406)
T COG1819 1 RMKILFVVC--------GAYGHVNPCLALGKELRRRGHEVVFASTGK 39 (406)
T ss_pred CceEEEEec--------cccccccchHHHHHHHHhcCCeEEEEeCHH
Confidence 499999887 778898765 5567999999999887654
No 62
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=54.59 E-value=11 Score=40.41 Aligned_cols=40 Identities=28% Similarity=0.308 Sum_probs=28.8
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
-|||.+.+= +. +-=--+...|.++|+++||+|.|+.|...
T Consensus 21 ~kIl~~~P~---~~--~SH~~~~~~l~~~La~rGH~VTvi~p~~~ 60 (507)
T PHA03392 21 ARILAVFPT---PA--YSHHSVFKVYVEALAERGHNVTVIKPTLR 60 (507)
T ss_pred ccEEEEcCC---CC--CcHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 367766431 11 22346788999999999999999999753
No 63
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=54.57 E-value=19 Score=32.73 Aligned_cols=35 Identities=20% Similarity=0.466 Sum_probs=28.4
Q ss_pred CceEEEEecccccccccccHh--HHHhhHHHHHHHCCCeEEEE
Q 015531 277 VMNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVV 317 (405)
Q Consensus 277 ~MKILfVSSE~aPfaKTGGLG--DVVgSLPKALa~~GhdV~VI 317 (405)
.|||+.|++ -.||-| .++..|+.+|++.|.+|-+|
T Consensus 16 ~~kvI~v~s------~kgG~GKTt~a~~LA~~la~~G~rVllI 52 (204)
T TIGR01007 16 EIKVLLITS------VKPGEGKSTTSANIAVAFAQAGYKTLLI 52 (204)
T ss_pred CCcEEEEec------CCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 389999987 334444 48999999999999999876
No 64
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=52.77 E-value=22 Score=41.91 Aligned_cols=46 Identities=24% Similarity=0.285 Sum_probs=38.3
Q ss_pred CceEEEEecc---------cccccccccHhHHHhhHHHHHHHCC--CeEEEEeeCCC
Q 015531 277 VMNVILVAAE---------CGPWSKTGGLGDVAGALPKALARRG--HRVMVVAPHYG 322 (405)
Q Consensus 277 ~MKILfVSSE---------~aPfaKTGGLGDVVgSLPKALa~~G--hdV~VIlP~Y~ 322 (405)
.|.|+||+-= +.-=+-|||..-.|-.|++||+++| |+|.|++-...
T Consensus 169 ~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~ 225 (1050)
T TIGR02468 169 KLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVS 225 (1050)
T ss_pred ceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcC
Confidence 4789999854 3334779999999999999999998 89999987764
No 65
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=50.18 E-value=23 Score=33.32 Aligned_cols=30 Identities=33% Similarity=0.622 Sum_probs=26.3
Q ss_pred ccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 292 KTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 292 KTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
-+|| |+|+....+.|.+.|++|.||-|.+.
T Consensus 15 VIGg-G~va~~ka~~Ll~~ga~V~VIs~~~~ 44 (202)
T PRK06718 15 IVGG-GKVAGRRAITLLKYGAHIVVISPELT 44 (202)
T ss_pred EECC-CHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 3466 99999999999999999999999763
No 66
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=48.93 E-value=16 Score=38.19 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccCCCCCCccchhhhcCcCCC
Q 015531 98 KKVLAMQKQLLQQISERRKLVSSIKSDIANSEEDEVSYEERENSFSD 144 (405)
Q Consensus 98 kkvla~q~~llqqiaer~klvssi~~~~~~~~~~~~s~~~~~~s~~~ 144 (405)
-++||+|+.=|.+||+- +-..|.+.++|+.+..|.++
T Consensus 321 ~~~L~~~~pel~~l~~s----------~~~~e~~~~~~~sss~ssss 357 (407)
T KOG2130|consen 321 ARLLALQRPELADLADS----------THLEESTGLASDSSSDSSSS 357 (407)
T ss_pred HHHHhhcChhHHHHhhh----------hccccccCcccccccccccc
Confidence 36999999999999863 33446677776655544433
No 67
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=48.59 E-value=24 Score=34.67 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=26.7
Q ss_pred CCCceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeC
Q 015531 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (405)
Q Consensus 275 ~n~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~ 320 (405)
++.|||++|. .|-|-+.|+..|++.||+|.++...
T Consensus 3 ~~~m~I~IiG-----------~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGIIG-----------TGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcCcEEEEEC-----------CCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 4458988774 4555567778899999999999764
No 68
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=44.71 E-value=10 Score=39.06 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=20.8
Q ss_pred HHHhhHHHHHHHCCCeEEEEeeCC
Q 015531 298 DVAGALPKALARRGHRVMVVAPHY 321 (405)
Q Consensus 298 DVVgSLPKALa~~GhdV~VIlP~Y 321 (405)
=++..|.++|+++||+|.|++|..
T Consensus 14 ~~~~~l~~~L~~rGH~VTvl~~~~ 37 (500)
T PF00201_consen 14 IFMRPLAEELAERGHNVTVLTPSP 37 (500)
T ss_dssp HHHHHHHHHHHHH-TTSEEEHHHH
T ss_pred HHHHHHHHHHHhcCCceEEEEeec
Confidence 367889999999999999999986
No 69
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=43.81 E-value=29 Score=35.58 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=29.2
Q ss_pred CceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeC
Q 015531 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (405)
Q Consensus 277 ~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~ 320 (405)
.++|.+| ||+|-+-++|.++|++.||+|.++-+.
T Consensus 98 ~~~I~Ii----------GG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIV----------GGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEE----------cCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 3677665 889999999999999999999998753
No 70
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=42.82 E-value=24 Score=35.88 Aligned_cols=31 Identities=39% Similarity=0.669 Sum_probs=29.0
Q ss_pred cccHhHHHhhHHHHHHHCCCeEEEEeeCCCC
Q 015531 293 TGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (405)
Q Consensus 293 TGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~ 323 (405)
-||+.|.+..+..+|.+.-..|+|++|.|.-
T Consensus 100 pGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~ 130 (285)
T PF01972_consen 100 PGGLVDAAEQIARALREHPAKVTVIVPHYAM 130 (285)
T ss_pred CCCcHHHHHHHHHHHHhCCCCEEEEECcccc
Confidence 4999999999999999999999999999873
No 71
>PRK06756 flavodoxin; Provisional
Probab=42.16 E-value=51 Score=28.67 Aligned_cols=37 Identities=11% Similarity=0.287 Sum_probs=30.6
Q ss_pred CceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 277 ~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
+|||+.|- ++.+|-=..|+..+.+.|.+.|++|.++-
T Consensus 1 mmkv~IiY-----~S~tGnTe~vA~~ia~~l~~~g~~v~~~~ 37 (148)
T PRK06756 1 MSKLVMIF-----ASMSGNTEEMADHIAGVIRETENEIEVID 37 (148)
T ss_pred CceEEEEE-----ECCCchHHHHHHHHHHHHhhcCCeEEEee
Confidence 46776664 46799999999999999999999997653
No 72
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=41.35 E-value=31 Score=34.34 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=38.2
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i 324 (405)
|||.|+- -|+....--.|-...|-.|.+++||+|.++-|..=.+
T Consensus 1 m~~~~~~---~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~~ 44 (312)
T TIGR01380 1 LKVAFQM---DPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLSV 44 (312)
T ss_pred CeEEEEe---CCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheEE
Confidence 7888885 6888888888999999999999999999999986443
No 73
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=39.38 E-value=58 Score=28.44 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=33.8
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCCC
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYA 325 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i~ 325 (405)
.|.+++....|-. +..--++..+|-+|.++ |++|+|++.......
T Consensus 36 ~I~i~~~~~~~~~-~~~~~~l~~~L~~a~~r-Gv~V~il~~~~~~~~ 80 (176)
T cd00138 36 SIYIASFYLSPLI-TEYGPVILDALLAAARR-GVKVRILVDEWSNTD 80 (176)
T ss_pred EEEEEEeEecccc-cccchHHHHHHHHHHHC-CCEEEEEEcccccCC
Confidence 6888887766655 34456777888888764 999999999887543
No 74
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=39.03 E-value=51 Score=28.39 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=22.7
Q ss_pred ceEEEEecccccccccccHhHH-HhhHHHHHHHCCCeEEEEeeC
Q 015531 278 MNVILVAAECGPWSKTGGLGDV-AGALPKALARRGHRVMVVAPH 320 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDV-VgSLPKALa~~GhdV~VIlP~ 320 (405)
|||+++.+ |+.+-. +..+-++|.+.|++|+|++=.
T Consensus 1 k~i~l~vt--------Gs~~~~~~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVT--------GSIAAYKAPDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE---------SSGGGGGHHHHHHHHHTTTSEEEEEESH
T ss_pred CEEEEEEE--------CHHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 56766554 333322 467778889999999988754
No 75
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=38.72 E-value=25 Score=33.52 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=27.1
Q ss_pred ccHhHHHhhHHHHHHHCCCeEEEEeeCCCCC
Q 015531 294 GGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (405)
Q Consensus 294 GGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i 324 (405)
-|+|.|-..|++.|.++||+|.+|---....
T Consensus 6 iG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~ 36 (225)
T COG0569 6 IGAGRVGRSVARELSEEGHNVVLIDRDEERV 36 (225)
T ss_pred ECCcHHHHHHHHHHHhCCCceEEEEcCHHHH
Confidence 4899999999999999999999998766544
No 76
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=38.57 E-value=1.4e+02 Score=34.19 Aligned_cols=110 Identities=21% Similarity=0.252 Sum_probs=71.2
Q ss_pred ccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCC-CCC-----C-C----------CCce-----------EEEEE
Q 015531 286 ECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN-YAE-----P-Q----------DTGI-----------RKRYR 337 (405)
Q Consensus 286 E~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~-i~e-----~-~----------~~~~-----------~~~~~ 337 (405)
|.-|-.- ||||=.++..-++++.+|.....+-=+|.. +.+ . + ...+ ...+.
T Consensus 108 e~~p~lg-GGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w~~~~~pwe~~r~~~a~~~d~~V~ 186 (750)
T COG0058 108 ESDPGLG-GGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRDAEGVPYDVPVP 186 (750)
T ss_pred ccCcccc-ccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhhhccCCcceeecccCCceeeeeEE
Confidence 4445555 999999999999999999988888777763 110 0 0 0000 01112
Q ss_pred eCC-cceEEEEEEEEeCCeEEEEEeCCCC--CC----CCCCcccCCCCC-HHHHH---HHHHHHHHHHHhhcC
Q 015531 338 VDR-QDIEVAYFQAYIDGVDFVFLDSPLF--RH----LGNNIYGGGRED-ILKRM---VLFCKAAIEVKFYSR 399 (405)
Q Consensus 338 ~~G-~~~~v~V~~~~i~GV~vYFIdnp~f--F~----R~~~IYG~~y~D-NaeRF---afFckAALEll~~L~ 399 (405)
..+ ....+++|.+....+++||.+-..= -. -.+.+|++ | ...|+ .||+.|.++.+.+..
T Consensus 187 g~~~~~~~lrlW~a~~~~~~~~l~~~n~~e~~~~~~~iT~~LYp~---Ds~elRl~Qeyfl~~agvq~I~~~~ 256 (750)
T COG0058 187 GYDNRVVTLRLWQAQVGRVPLYLLDFNVGENKNDARNITRVLYPG---DSKELRLKQEYFLGSAGVQDILARG 256 (750)
T ss_pred eccCcEEEEEEEEEecCccceEeecCCCcccchhhhhHHhhcCCC---CcHHHHHhhhheeeeHHHHHHHHHh
Confidence 233 5567788888887889999865421 00 01236764 3 56675 699999999997763
No 77
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=38.16 E-value=43 Score=31.98 Aligned_cols=23 Identities=43% Similarity=0.678 Sum_probs=19.3
Q ss_pred hHHHhhHHHHHHHCCCeEEEEee
Q 015531 297 GDVAGALPKALARRGHRVMVVAP 319 (405)
Q Consensus 297 GDVVgSLPKALa~~GhdV~VIlP 319 (405)
|-|-+.++..|++.||+|.++..
T Consensus 9 G~~G~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 9 GAIGGLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CHHHHHHHHHHHhCCCeEEEEEC
Confidence 45558888999999999999986
No 78
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=37.87 E-value=1.1e+02 Score=33.09 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=27.7
Q ss_pred CceEEEEecccccccccccHhHH-HhhHHHHHHHCCCeEEEEeeCC
Q 015531 277 VMNVILVAAECGPWSKTGGLGDV-AGALPKALARRGHRVMVVAPHY 321 (405)
Q Consensus 277 ~MKILfVSSE~aPfaKTGGLGDV-VgSLPKALa~~GhdV~VIlP~Y 321 (405)
.+||++..+ ||.|-+ +-.|-+.|.+.|++|+|||-.-
T Consensus 70 ~k~IllgVt--------GsIAayka~~lvr~L~k~G~~V~VvmT~s 107 (475)
T PRK13982 70 SKRVTLIIG--------GGIAAYKALDLIRRLKERGAHVRCVLTKA 107 (475)
T ss_pred CCEEEEEEc--------cHHHHHHHHHHHHHHHhCcCEEEEEECcC
Confidence 467877554 777654 4567888899999999998663
No 79
>PRK08655 prephenate dehydrogenase; Provisional
Probab=37.34 E-value=39 Score=35.53 Aligned_cols=27 Identities=26% Similarity=0.517 Sum_probs=23.6
Q ss_pred ccHhHHHhhHHHHHHHCCCeEEEEeeC
Q 015531 294 GGLGDVAGALPKALARRGHRVMVVAPH 320 (405)
Q Consensus 294 GGLGDVVgSLPKALa~~GhdV~VIlP~ 320 (405)
||+|-+-++|.++|.+.|++|.++-+.
T Consensus 7 GG~G~mG~slA~~L~~~G~~V~v~~r~ 33 (437)
T PRK08655 7 GGTGGLGKWFARFLKEKGFEVIVTGRD 33 (437)
T ss_pred ecCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 778888899999999999999888653
No 80
>PRK05246 glutathione synthetase; Provisional
Probab=36.25 E-value=42 Score=33.31 Aligned_cols=45 Identities=22% Similarity=0.232 Sum_probs=38.8
Q ss_pred CceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCC
Q 015531 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (405)
Q Consensus 277 ~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i 324 (405)
.|||+||- -|+.+..--.|-...|.+|.+++||+|.++.|..=.+
T Consensus 1 ~~~~~~~~---~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~~ 45 (316)
T PRK05246 1 MMKVAFQM---DPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDLSL 45 (316)
T ss_pred CceEEEEe---CCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhhcEE
Confidence 38899886 6888888888999999999999999999999986433
No 81
>PRK07454 short chain dehydrogenase; Provisional
Probab=36.20 E-value=49 Score=30.11 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=26.2
Q ss_pred CceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 277 ~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
.||+++|+ ||=+.+-..|.+.|.++|++|.++.
T Consensus 5 ~~k~vlIt---------G~sg~iG~~la~~l~~~G~~V~~~~ 37 (241)
T PRK07454 5 SMPRALIT---------GASSGIGKATALAFAKAGWDLALVA 37 (241)
T ss_pred CCCEEEEe---------CCCchHHHHHHHHHHHCCCEEEEEe
Confidence 46777664 6667777889999999999988875
No 82
>CHL00175 minD septum-site determining protein; Validated
Probab=35.91 E-value=62 Score=31.02 Aligned_cols=35 Identities=29% Similarity=0.592 Sum_probs=29.1
Q ss_pred CceEEEEecccccccccccHh--HHHhhHHHHHHHCCCeEEEE
Q 015531 277 VMNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVV 317 (405)
Q Consensus 277 ~MKILfVSSE~aPfaKTGGLG--DVVgSLPKALa~~GhdV~VI 317 (405)
++||+.|++ --||.| -++..|+.+|+++|.+|-+|
T Consensus 14 ~~~vi~v~s------~KGGvGKTt~a~nLA~~La~~g~~vlli 50 (281)
T CHL00175 14 MSRIIVITS------GKGGVGKTTTTANLGMSIARLGYRVALI 50 (281)
T ss_pred CceEEEEEc------CCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 368888887 447777 68899999999999998887
No 83
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=35.77 E-value=59 Score=31.78 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=26.1
Q ss_pred ceEEEEecccccccccccHhHHHhhHHH--HHHHC--CCeEEEEeeC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPK--ALARR--GHRVMVVAPH 320 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPK--ALa~~--GhdV~VIlP~ 320 (405)
||||+|-. +++|||+-++|- +|++. +.++.+++-.
T Consensus 1 m~ILii~~--------~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~ 39 (322)
T PRK10964 1 MRVLIVKT--------SSMGDVLHTLPALTDAQQAIPGIQFDWVVEE 39 (322)
T ss_pred CeEEEEec--------cchHHHHhHHHHHHHHHHhCCCCEEEEEECH
Confidence 78888754 999999998884 67775 6677666643
No 84
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=35.57 E-value=34 Score=32.47 Aligned_cols=25 Identities=48% Similarity=0.579 Sum_probs=21.8
Q ss_pred HhhHHHHHHHCCCeEEEEeeCCCCC
Q 015531 300 AGALPKALARRGHRVMVVAPHYGNY 324 (405)
Q Consensus 300 VgSLPKALa~~GhdV~VIlP~Y~~i 324 (405)
..+|-++|++.||+|.|+.|...+-
T Consensus 16 i~aL~~~L~~~g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 16 IRALAKALSALGHDVVVVAPDSEQS 40 (196)
T ss_dssp HHHHHHHHTTTSSEEEEEEESSSTT
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCc
Confidence 5788999988899999999998754
No 85
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=33.84 E-value=82 Score=27.11 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=29.1
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~ 320 (405)
|||+.|..=.- +.|=-.-++..+.+.|.+.|++|.+|=+.
T Consensus 1 Mkilii~gS~r---~~~~t~~l~~~~~~~l~~~g~e~~~i~l~ 40 (152)
T PF03358_consen 1 MKILIINGSPR---KNSNTRKLAEAVAEQLEEAGAEVEVIDLA 40 (152)
T ss_dssp -EEEEEESSSS---TTSHHHHHHHHHHHHHHHTTEEEEEEECT
T ss_pred CEEEEEECcCC---CCCHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 89999877544 44555666677778888889999999554
No 86
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=32.78 E-value=67 Score=32.89 Aligned_cols=40 Identities=30% Similarity=0.398 Sum_probs=32.2
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i 324 (405)
.+||+..+ ..|=--.+..|++.|+++||+|++++|.+...
T Consensus 7 ~~il~~~p-------~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~ 46 (496)
T KOG1192|consen 7 HNILVPFP-------GQSHLNPMLQLAKRLAERGHNVTVVTPSFNAL 46 (496)
T ss_pred eeEEEECC-------cccHHHHHHHHHHHHHHcCCceEEEEeechhc
Confidence 45666655 45666788899999999999999999998644
No 87
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=32.26 E-value=89 Score=32.00 Aligned_cols=35 Identities=29% Similarity=0.568 Sum_probs=28.4
Q ss_pred CCceEEEEecccccccccccHh--HHHhhHHHHHHHCCCeEEEE
Q 015531 276 NVMNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVV 317 (405)
Q Consensus 276 n~MKILfVSSE~aPfaKTGGLG--DVVgSLPKALa~~GhdV~VI 317 (405)
+..+|+.|+. | ||.| .++..|+.+|+++|.+|-+|
T Consensus 29 ~~~~ii~v~g------k-gG~GKSt~a~nLa~~la~~g~rVlli 65 (329)
T cd02033 29 KKTQIIAIYG------K-GGIGKSFTLANLSYMMAQQGKRVLLI 65 (329)
T ss_pred CCCeEEEEEC------C-CCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4467888862 4 7777 67899999999999999988
No 88
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=32.04 E-value=36 Score=34.03 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=22.6
Q ss_pred cccHhHHHhhHHHHHHHCCCeEEEE
Q 015531 293 TGGLGDVAGALPKALARRGHRVMVV 317 (405)
Q Consensus 293 TGGLGDVVgSLPKALa~~GhdV~VI 317 (405)
.+|||.+-++|.++|++.|+.|.|+
T Consensus 8 IvG~GliG~s~a~~l~~~g~~v~i~ 32 (279)
T COG0287 8 IVGLGLMGGSLARALKEAGLVVRII 32 (279)
T ss_pred EECCchHHHHHHHHHHHcCCeEEEE
Confidence 4789999999999999999999665
No 89
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=31.29 E-value=54 Score=32.46 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=27.0
Q ss_pred ceEEEEecccccccccccHhHHHhhHH--HHHHHC--CCeEEEEeeCC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALP--KALARR--GHRVMVVAPHY 321 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLP--KALa~~--GhdV~VIlP~Y 321 (405)
||||+| +.++||||+-++| ++|++. +.++.+++..+
T Consensus 1 mrILii--------~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~ 40 (348)
T PRK10916 1 MKILVI--------GPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAW 40 (348)
T ss_pred CcEEEE--------ccCcccHHHhHHHHHHHHHHHCCCCeEEEEechh
Confidence 688876 5599999999988 577775 66777666543
No 90
>PRK09134 short chain dehydrogenase; Provisional
Probab=31.28 E-value=94 Score=28.77 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=23.1
Q ss_pred CceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEE
Q 015531 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVV 317 (405)
Q Consensus 277 ~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VI 317 (405)
+.|+++|| ||-+.+-..|.+.|++.|++|.++
T Consensus 8 ~~k~vlIt---------Gas~giG~~la~~l~~~g~~v~~~ 39 (258)
T PRK09134 8 APRAALVT---------GAARRIGRAIALDLAAHGFDVAVH 39 (258)
T ss_pred CCCEEEEe---------CCCcHHHHHHHHHHHHCCCEEEEE
Confidence 34566665 444555578999999999988765
No 91
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=31.08 E-value=62 Score=31.19 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=22.7
Q ss_pred cccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 293 TGGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 293 TGGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
|||-|-+-..|.++|.++|++|.++.
T Consensus 6 tGatG~iG~~l~~~L~~~g~~V~~~~ 31 (338)
T PRK10675 6 TGGSGYIGSHTCVQLLQNGHDVVILD 31 (338)
T ss_pred ECCCChHHHHHHHHHHHCCCeEEEEe
Confidence 47888888899999999999999874
No 92
>PRK07102 short chain dehydrogenase; Provisional
Probab=31.04 E-value=74 Score=29.07 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=18.5
Q ss_pred ccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 294 GGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 294 GGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
||=+=+-.++.+.|++.|++|.++-
T Consensus 8 Gas~giG~~~a~~l~~~G~~Vi~~~ 32 (243)
T PRK07102 8 GATSDIARACARRYAAAGARLYLAA 32 (243)
T ss_pred cCCcHHHHHHHHHHHhcCCEEEEEe
Confidence 3334444788999999999987774
No 93
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=31.04 E-value=64 Score=31.19 Aligned_cols=33 Identities=33% Similarity=0.487 Sum_probs=25.4
Q ss_pred CceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeC
Q 015531 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (405)
Q Consensus 277 ~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~ 320 (405)
+|||.+|- +|-+-..+...|++.||+|.++-..
T Consensus 1 mmkI~iiG-----------~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLG-----------AGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEEC-----------CCHHHHHHHHHHHhCCCEEEEEECC
Confidence 36777663 4667788888999999999988753
No 94
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=30.85 E-value=68 Score=29.00 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=21.4
Q ss_pred cccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 293 TGGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 293 TGGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
|||-+-+-.+|.++|+++|++|.++.
T Consensus 7 tGa~g~iG~~l~~~l~~~g~~v~~~~ 32 (247)
T PRK09730 7 TGGSRGIGRATALLLAQEGYTVAVNY 32 (247)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 46777777889999999999988754
No 95
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=29.93 E-value=88 Score=29.98 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=20.8
Q ss_pred HHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 299 VAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 299 VVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
++-.|.++|.++||+|.|+.+..+
T Consensus 15 ~~~~la~~l~~~G~ev~v~~~~~~ 38 (350)
T cd03785 15 PALALAEELRERGAEVLFLGTKRG 38 (350)
T ss_pred HHHHHHHHHHhCCCEEEEEECCCc
Confidence 556899999999999999987654
No 96
>PLN02712 arogenate dehydrogenase
Probab=29.77 E-value=1.6e+02 Score=32.91 Aligned_cols=34 Identities=24% Similarity=0.526 Sum_probs=28.2
Q ss_pred CCceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeC
Q 015531 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (405)
Q Consensus 276 n~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~ 320 (405)
..|+|.+| |+|-+-++|.++|.+.|++|.++-+.
T Consensus 51 ~~~kIgII-----------G~G~mG~slA~~L~~~G~~V~~~dr~ 84 (667)
T PLN02712 51 TQLKIAII-----------GFGNYGQFLAKTLISQGHTVLAHSRS 84 (667)
T ss_pred CCCEEEEE-----------ccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45899887 47888899999999999999887653
No 97
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=29.57 E-value=43 Score=33.37 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=22.1
Q ss_pred ccHhHHHh--hHHHHHHHCCCeEEEEeeCC
Q 015531 294 GGLGDVAG--ALPKALARRGHRVMVVAPHY 321 (405)
Q Consensus 294 GGLGDVVg--SLPKALa~~GhdV~VIlP~Y 321 (405)
|+.|||-- .|+++|+++||+|++++|-.
T Consensus 4 p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~ 33 (392)
T TIGR01426 4 PAHGHVNPTLGVVEELVARGHRVTYATTEE 33 (392)
T ss_pred CccccccccHHHHHHHHhCCCeEEEEeCHH
Confidence 55666643 57789999999999999854
No 98
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=29.20 E-value=81 Score=30.09 Aligned_cols=38 Identities=29% Similarity=0.450 Sum_probs=28.0
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
|||+|...= .|+|=++.+++-+-+=+||+|.+++....
T Consensus 1 MkIl~~v~~-------~G~GH~~R~~~la~~Lrg~~v~~~~~~~~ 38 (318)
T PF13528_consen 1 MKILFYVQG-------HGLGHASRCLALARALRGHEVTFITSGPA 38 (318)
T ss_pred CEEEEEeCC-------CCcCHHHHHHHHHHHHccCceEEEEcCCc
Confidence 899986542 28999998766443336999999997754
No 99
>PLN02842 nucleotide kinase
Probab=29.14 E-value=81 Score=34.46 Aligned_cols=48 Identities=25% Similarity=0.341 Sum_probs=43.6
Q ss_pred CCCCCceEEEEeccccc---ccccccHhHHHhhHHHHHHHCCCeEEEEeeC
Q 015531 273 AGANVMNVILVAAECGP---WSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (405)
Q Consensus 273 ~~~n~MKILfVSSE~aP---faKTGGLGDVVgSLPKALa~~GhdV~VIlP~ 320 (405)
.|.+.|+|-++-+|+.| --..|+|=.++..+..+|++.|-+|+|+.|.
T Consensus 257 ~g~~r~~~~~~~pel~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~kv~~~~ 307 (505)
T PLN02842 257 DGRTRLKVEINIPELNPEMDVYRIGTLMELVRVLALSFADDGKRVKVCVQG 307 (505)
T ss_pred CCcceEEEEEecCccccccccccchhHHHHHHHHHHHHhhcCCceEEEecC
Confidence 46677999999999998 4578999999999999999999999999999
No 100
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=29.07 E-value=69 Score=32.10 Aligned_cols=34 Identities=47% Similarity=0.842 Sum_probs=26.4
Q ss_pred ceEEEEecccccccccccHhH--HHhhHHHHHHHCCCeEEEEe
Q 015531 278 MNVILVAAECGPWSKTGGLGD--VAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGD--VVgSLPKALa~~GhdV~VIl 318 (405)
|||+|++. -||.|- ++.+++-+++++|++|-|+.
T Consensus 1 ~r~~~~~G-------KGGVGKTT~aaA~A~~~A~~G~rtLlvS 36 (305)
T PF02374_consen 1 MRILFFGG-------KGGVGKTTVAAALALALARRGKRTLLVS 36 (305)
T ss_dssp -SEEEEEE-------STTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CeEEEEec-------CCCCCcHHHHHHHHHHHhhCCCCeeEee
Confidence 78888776 488885 77779999999999999884
No 101
>CHL00194 ycf39 Ycf39; Provisional
Probab=29.01 E-value=69 Score=31.15 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=23.3
Q ss_pred cccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 293 TGGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 293 TGGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
|||=|=+-..|.++|.++||+|+++.
T Consensus 6 tGatG~iG~~lv~~Ll~~g~~V~~l~ 31 (317)
T CHL00194 6 IGATGTLGRQIVRQALDEGYQVRCLV 31 (317)
T ss_pred ECCCcHHHHHHHHHHHHCCCeEEEEE
Confidence 58888888899999999999999986
No 102
>PLN00198 anthocyanidin reductase; Provisional
Probab=28.83 E-value=1.1e+02 Score=29.81 Aligned_cols=38 Identities=26% Similarity=0.305 Sum_probs=28.1
Q ss_pred CCCCCCCceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 271 PLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 271 pl~~~n~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
.|++..+|+||. |||-|=+-..|.++|.++|++|.++.
T Consensus 3 ~~~~~~~~~vlI----------tG~~GfIG~~l~~~L~~~g~~V~~~~ 40 (338)
T PLN00198 3 TLTPTGKKTACV----------IGGTGFLASLLIKLLLQKGYAVNTTV 40 (338)
T ss_pred cccCCCCCeEEE----------ECCchHHHHHHHHHHHHCCCEEEEEE
Confidence 355555566543 47777778889999999999997664
No 103
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=28.55 E-value=93 Score=28.38 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=22.8
Q ss_pred CceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEE
Q 015531 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVV 317 (405)
Q Consensus 277 ~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VI 317 (405)
+||+++|+. -+|||| ..|.+.|++.|++|.++
T Consensus 1 m~k~ilItG------as~giG---~~la~~l~~~g~~v~~~ 32 (248)
T PRK06947 1 MRKVVLITG------ASRGIG---RATAVLAAARGWSVGIN 32 (248)
T ss_pred CCcEEEEeC------CCCcHH---HHHHHHHHHCCCEEEEE
Confidence 356666665 345555 67899999999988654
No 104
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=28.26 E-value=46 Score=27.71 Aligned_cols=28 Identities=36% Similarity=0.635 Sum_probs=25.5
Q ss_pred cccHhHHHhhHHHHHHHCCCeEEEEeeCC
Q 015531 293 TGGLGDVAGALPKALARRGHRVMVVAPHY 321 (405)
Q Consensus 293 TGGLGDVVgSLPKALa~~GhdV~VIlP~Y 321 (405)
+|| |+|+..-.+.|.+.|.+|.|+.|.-
T Consensus 13 vGg-G~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 13 VGG-GPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp EEE-SHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred ECC-CHHHHHHHHHHHhCCCEEEEECCch
Confidence 366 9999999999999999999999995
No 105
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=27.27 E-value=1.2e+02 Score=29.15 Aligned_cols=29 Identities=17% Similarity=0.084 Sum_probs=24.7
Q ss_pred ccccHhHHH--hhHHHHHHHCCCeEEEEeeC
Q 015531 292 KTGGLGDVA--GALPKALARRGHRVMVVAPH 320 (405)
Q Consensus 292 KTGGLGDVV--gSLPKALa~~GhdV~VIlP~ 320 (405)
-|||.|=+= -.|-+.|.+.|++|+|||=.
T Consensus 12 VTGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 12 LTGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred EcCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 459998885 68999999999999999854
No 106
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=27.20 E-value=60 Score=34.60 Aligned_cols=45 Identities=36% Similarity=0.550 Sum_probs=41.0
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i 324 (405)
++|+||+.=.+|- +||.-.=+..|...|-++||.|-|++=.|++-
T Consensus 1 ~~i~mVsdff~P~--~ggveshiy~lSq~li~lghkVvvithayg~r 45 (426)
T KOG1111|consen 1 SRILMVSDFFYPS--TGGVESHIYALSQCLIRLGHKVVVITHAYGNR 45 (426)
T ss_pred CcceeeCcccccC--CCChhhhHHHhhcchhhcCCeEEEEeccccCc
Confidence 5789999888884 79999999999999999999999999999964
No 107
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=26.85 E-value=38 Score=34.96 Aligned_cols=28 Identities=32% Similarity=0.321 Sum_probs=26.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhhhhhhhcc
Q 015531 92 ATIEKSKKVLAMQKQLLQQISERRKLVSSIK 122 (405)
Q Consensus 92 atiekskkvla~q~~llqqiaer~klvssi~ 122 (405)
+|+.|+|+.+--|-++|+++|| ||++=|
T Consensus 186 ttt~ka~~~~~~~~e~l~e~a~---l~~AgK 213 (324)
T COG2144 186 TTTMKAKEKFRAQLELLREGAK---LVKAGK 213 (324)
T ss_pred ceeeccHHHHHHHHHHHHHHHH---HHhhcc
Confidence 4999999999999999999999 998776
No 108
>PLN00016 RNA-binding protein; Provisional
Probab=26.83 E-value=74 Score=31.89 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=28.0
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~ 320 (405)
||||.+.. ..||-|-+-..|.++|.+.||+|+++.-.
T Consensus 53 ~~VLVt~~------~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 53 KKVLIVNT------NSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ceEEEEec------cCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 56665422 33777778889999999999999998744
No 109
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=26.60 E-value=78 Score=31.10 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=24.7
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEee
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP 319 (405)
|||.+| |+|-|-+.+...|++.||+|.++..
T Consensus 3 mkI~Ii-----------G~G~mG~~~A~~L~~~G~~V~~~~r 33 (341)
T PRK08229 3 ARICVL-----------GAGSIGCYLGGRLAAAGADVTLIGR 33 (341)
T ss_pred ceEEEE-----------CCCHHHHHHHHHHHhcCCcEEEEec
Confidence 677766 4566667888899999999999875
No 110
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=26.22 E-value=57 Score=28.98 Aligned_cols=31 Identities=42% Similarity=0.606 Sum_probs=24.0
Q ss_pred CceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 277 ~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
.|||-+|.+ |-|...|.++|.+.||.|.-+.
T Consensus 10 ~l~I~iIGa-----------GrVG~~La~aL~~ag~~v~~v~ 40 (127)
T PF10727_consen 10 RLKIGIIGA-----------GRVGTALARALARAGHEVVGVY 40 (127)
T ss_dssp --EEEEECT-----------SCCCCHHHHHHHHTTSEEEEES
T ss_pred ccEEEEECC-----------CHHHHHHHHHHHHCCCeEEEEE
Confidence 389988855 5667899999999999987653
No 111
>PRK09271 flavodoxin; Provisional
Probab=26.22 E-value=1.3e+02 Score=26.86 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=29.0
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEE
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVV 317 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VI 317 (405)
|||+.|-. +.+|-=..++..|..+|...|++|.+.
T Consensus 1 mkv~IvY~-----S~tGnTe~~A~~ia~~l~~~g~~v~~~ 35 (160)
T PRK09271 1 MRILLAYA-----SLSGNTREVAREIEERCEEAGHEVDWV 35 (160)
T ss_pred CeEEEEEE-----cCCchHHHHHHHHHHHHHhCCCeeEEE
Confidence 67666543 678999999999999999999998754
No 112
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=26.20 E-value=38 Score=33.61 Aligned_cols=45 Identities=29% Similarity=0.426 Sum_probs=35.3
Q ss_pred ceEEEEeccccc---------ccccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 278 MNVILVAAECGP---------WSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 278 MKILfVSSE~aP---------faKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
..|+-|++=+.- -+--||+--...++++.|++++.+|.+++|.+=
T Consensus 144 ~sIiNvsSIVGkiGN~GQtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI 197 (256)
T KOG1200|consen 144 LSIINVSSIVGKIGNFGQTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFI 197 (256)
T ss_pred ceEEeehhhhcccccccchhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccc
Confidence 467777775431 233467888899999999999999999999884
No 113
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=26.07 E-value=85 Score=31.05 Aligned_cols=25 Identities=40% Similarity=0.780 Sum_probs=21.2
Q ss_pred cccHh--HHHhhHHHHHHHCCCeEEEE
Q 015531 293 TGGLG--DVAGALPKALARRGHRVMVV 317 (405)
Q Consensus 293 TGGLG--DVVgSLPKALa~~GhdV~VI 317 (405)
=||.| ..+-.|+.+|+++|.+|-||
T Consensus 8 KGGVGKTTta~nLA~~La~~G~rVLlI 34 (290)
T CHL00072 8 KGGIGKSTTSCNISIALARRGKKVLQI 34 (290)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 38888 46788999999999999877
No 114
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=25.86 E-value=1.3e+02 Score=30.38 Aligned_cols=40 Identities=18% Similarity=0.410 Sum_probs=30.4
Q ss_pred CCCCCCCCCCceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 268 KPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 268 ~~ppl~~~n~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
+.|-+.+.+ |+||+. ||=|=|-..|.+.|.++||+|.++.
T Consensus 13 ~~~~~~~~~-~~IlVt----------GgtGfIG~~l~~~L~~~G~~V~~v~ 52 (370)
T PLN02695 13 REPYWPSEK-LRICIT----------GAGGFIASHIARRLKAEGHYIIASD 52 (370)
T ss_pred CCCCCCCCC-CEEEEE----------CCccHHHHHHHHHHHhCCCEEEEEE
Confidence 334444433 787643 8888899999999999999999874
No 115
>PRK06924 short chain dehydrogenase; Provisional
Probab=25.81 E-value=93 Score=28.43 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=20.0
Q ss_pred ccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 294 GGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 294 GGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
||-+-+-.++.++|+++|++|.++-
T Consensus 8 GasggiG~~ia~~l~~~g~~V~~~~ 32 (251)
T PRK06924 8 GTSQGLGEAIANQLLEKGTHVISIS 32 (251)
T ss_pred cCCchHHHHHHHHHHhcCCEEEEEe
Confidence 5666666889999999999987764
No 116
>PRK10037 cell division protein; Provisional
Probab=25.70 E-value=81 Score=29.88 Aligned_cols=34 Identities=29% Similarity=0.547 Sum_probs=27.6
Q ss_pred ceEEEEecccccccccccHhH--HHhhHHHHHHHCCCeEEEE
Q 015531 278 MNVILVAAECGPWSKTGGLGD--VAGALPKALARRGHRVMVV 317 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGD--VVgSLPKALa~~GhdV~VI 317 (405)
|||+-|+. -=||.|- ++..|+.+|+++|++|-||
T Consensus 1 ~~~iav~n------~KGGvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 1 MAILGLQG------VRGGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred CcEEEEec------CCCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 77877777 3467763 6788999999999999988
No 117
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=25.70 E-value=82 Score=30.22 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=23.2
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEee
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP 319 (405)
|||+++.+ |-|-..|...|++.||+|.++..
T Consensus 1 mkI~IiG~-----------G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGA-----------GAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECC-----------CHHHHHHHHHHHHCCCceEEEec
Confidence 66766644 44556778889999999999876
No 118
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=25.59 E-value=86 Score=30.45 Aligned_cols=36 Identities=28% Similarity=0.242 Sum_probs=31.4
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
|||||-.-. ..||..-++-.|.++|.+.|+++.|+.
T Consensus 3 ~il~ii~~~----~~GG~e~~~~~l~~~l~~~~~~~~v~~ 38 (374)
T TIGR03088 3 LIVHVVYRF----DVGGLENGLVNLINHLPADRYRHAVVA 38 (374)
T ss_pred eEEEEeCCC----CCCcHHHHHHHHHhhccccccceEEEE
Confidence 788887654 469999999999999999999988886
No 119
>PRK10818 cell division inhibitor MinD; Provisional
Probab=25.58 E-value=1.1e+02 Score=29.02 Aligned_cols=36 Identities=28% Similarity=0.656 Sum_probs=28.5
Q ss_pred CceEEEEecccccccccccHh--HHHhhHHHHHHHCCCeEEEEe
Q 015531 277 VMNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 277 ~MKILfVSSE~aPfaKTGGLG--DVVgSLPKALa~~GhdV~VIl 318 (405)
+|||+-|++ --||.| .++..|+.+|+++|.+|-+|=
T Consensus 1 m~kviav~s------~KGGvGKTt~a~nlA~~la~~g~~vllvD 38 (270)
T PRK10818 1 MARIIVVTS------GKGGVGKTTSSAAIATGLAQKGKKTVVID 38 (270)
T ss_pred CceEEEEEe------CCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 358888886 347776 588899999999999988874
No 120
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=25.53 E-value=1e+02 Score=30.41 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=21.3
Q ss_pred ccHhHHHhhHHHHHHHCCCeEEEEee
Q 015531 294 GGLGDVAGALPKALARRGHRVMVVAP 319 (405)
Q Consensus 294 GGLGDVVgSLPKALa~~GhdV~VIlP 319 (405)
||=+| ...|.+.|.+.||+|.+.+-
T Consensus 7 GGT~e-gr~la~~L~~~g~~v~~s~~ 31 (256)
T TIGR00715 7 GGTVD-SRAIAKGLIAQGIEILVTVT 31 (256)
T ss_pred echHH-HHHHHHHHHhCCCeEEEEEc
Confidence 88889 99999999999999776543
No 121
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=25.31 E-value=72 Score=28.42 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=20.5
Q ss_pred cHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 295 GLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 295 GLGDVVgSLPKALa~~GhdV~VIl 318 (405)
|||.+-..+.+.|.+.|++|.++=
T Consensus 8 GlG~mG~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp --SHHHHHHHHHHHHTTTEEEEEE
T ss_pred chHHHHHHHHHHHHhcCCeEEeec
Confidence 799999999999999999999864
No 122
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=24.17 E-value=1e+02 Score=30.12 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=27.2
Q ss_pred cccccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 289 PWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 289 PfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
+.+-+|| |+|+..=.+.|.+.|.+|+||.|...
T Consensus 27 ~VLVVGG-G~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 27 KVLIIGG-GKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 4445565 88888888999999999999999864
No 123
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=24.05 E-value=1.6e+02 Score=27.45 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=19.7
Q ss_pred ccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 294 GGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 294 GGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
|+=|.+-..|.++|.+.||+|.++.
T Consensus 24 GasG~iG~~l~~~L~~~g~~V~~~~ 48 (251)
T PLN00141 24 GATGRTGKRIVEQLLAKGFAVKAGV 48 (251)
T ss_pred CCCcHHHHHHHHHHHhCCCEEEEEe
Confidence 5555666888899999999998764
No 124
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=24.05 E-value=1.1e+02 Score=28.17 Aligned_cols=34 Identities=32% Similarity=0.580 Sum_probs=26.7
Q ss_pred ceEEEEecccccccccccHh--HHHhhHHHHHHHCCCeEEEE
Q 015531 278 MNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVV 317 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLG--DVVgSLPKALa~~GhdV~VI 317 (405)
|||+-|++ --||.| -++..|+.+|+++|.+|-+|
T Consensus 1 m~iI~v~s------~KGGvGKTt~a~nla~~la~~g~~Vlli 36 (246)
T TIGR03371 1 MKVIAIVG------VKGGVGKTTLTANLASALKLLGEPVLAI 36 (246)
T ss_pred CcEEEEEe------CCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 67777766 347777 47888999999999998877
No 125
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=23.96 E-value=69 Score=28.79 Aligned_cols=26 Identities=46% Similarity=0.645 Sum_probs=20.3
Q ss_pred CCCCCchhhHHHHHHhhhhHHHHHHHHHHHHHhhhhh
Q 015531 81 ESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKL 117 (405)
Q Consensus 81 ~~~d~~e~~l~atiekskkvla~q~~llqqiaer~kl 117 (405)
.+.|..|+.++||. +||++|-+|-+|
T Consensus 10 v~~n~~e~I~~at~-----------eLl~~i~~~N~l 35 (118)
T PF07736_consen 10 VEENTPEEILEATR-----------ELLEEILERNEL 35 (118)
T ss_dssp -SSSSHHHHHHHHH-----------HHHHHHHHHTT-
T ss_pred cCCCCHHHHHHHHH-----------HHHHHHHHHcCC
Confidence 45688899988885 699999999877
No 126
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=23.86 E-value=70 Score=29.70 Aligned_cols=28 Identities=36% Similarity=0.617 Sum_probs=25.4
Q ss_pred ccccHhHHHhhHHHHHHHCCCeEEEEee
Q 015531 292 KTGGLGDVAGALPKALARRGHRVMVVAP 319 (405)
Q Consensus 292 KTGGLGDVVgSLPKALa~~GhdV~VIlP 319 (405)
-|||-|-+-..|.+.|.+.|++|.++.=
T Consensus 3 VtGatG~iG~~l~~~L~~~g~~V~~~~r 30 (292)
T TIGR01777 3 ITGGTGFIGRALTQRLTKDGHEVTILTR 30 (292)
T ss_pred EEcccchhhHHHHHHHHHcCCEEEEEeC
Confidence 4799999999999999999999998773
No 127
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=23.49 E-value=1.2e+02 Score=29.71 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=27.8
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeC
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~ 320 (405)
|||++++.|..=+ -...|-+||.++||+|.++-|.
T Consensus 1 m~~~i~~~~~s~~--------s~~~~~~a~~~~g~~v~~i~~~ 35 (300)
T PRK10446 1 MKIAILSRDGTLY--------SCKRLREAAIQRGHLVEILDPL 35 (300)
T ss_pred CeEEEEecCCcch--------hHHHHHHHHHHcCCeEEEEehH
Confidence 7899998885433 2357889999999999999766
No 128
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=23.16 E-value=83 Score=30.64 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=25.0
Q ss_pred EEEEecccccccccccHhHHHhhHHHHHHHCCC
Q 015531 280 VILVAAECGPWSKTGGLGDVAGALPKALARRGH 312 (405)
Q Consensus 280 ILfVSSE~aPfaKTGGLGDVVgSLPKALa~~Gh 312 (405)
-+++-..-.|..-+||-|||..++=-+|..+|.
T Consensus 171 ~~~~n~~gn~~la~gGsGDvLaGii~~llaq~~ 203 (242)
T PF01256_consen 171 RVYVNPTGNPGLATGGSGDVLAGIIAGLLAQGY 203 (242)
T ss_dssp EEEEE----GGGSSTTHHHHHHHHHHHHHHHTS
T ss_pred ceeEeCCCCCCCCCCCcccHHHHHHHHHHHccC
Confidence 345555667999999999999999999998886
No 129
>PRK06101 short chain dehydrogenase; Provisional
Probab=23.06 E-value=1.1e+02 Score=28.04 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=19.7
Q ss_pred ccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 294 GGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 294 GGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
||-+-+-.++.+.|+++|++|.++-
T Consensus 8 Gas~giG~~la~~L~~~G~~V~~~~ 32 (240)
T PRK06101 8 GATSGIGKQLALDYAKQGWQVIACG 32 (240)
T ss_pred cCCcHHHHHHHHHHHhCCCEEEEEE
Confidence 5555555889999999999987764
No 130
>PHA02820 phospholipase-D-like protein; Provisional
Probab=22.99 E-value=92 Score=32.86 Aligned_cols=45 Identities=13% Similarity=0.001 Sum_probs=34.4
Q ss_pred eEEEEecccccccc-----cccHhHHHhhHHHHHHHCCCeEEEEeeCCCC
Q 015531 279 NVILVAAECGPWSK-----TGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (405)
Q Consensus 279 KILfVSSE~aPfaK-----TGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~ 323 (405)
.|.+.++=+.|... +.==-++..+|-+|-+.+|++|++++|....
T Consensus 233 ~I~I~tpyfvP~~~~~~~~~~yw~~i~~AL~~AA~~RGV~VriLvp~~~d 282 (424)
T PHA02820 233 FVYVSVMNFIPIIYSKAGKILFWPYIEDELRRAAIDRKVSVKLLISCWQR 282 (424)
T ss_pred EEEEEEccccceeeccCCcccchHHHHHHHHHHHHhCCCEEEEEEeccCC
Confidence 58888888888732 1111568889988888999999999998653
No 131
>PRK05854 short chain dehydrogenase; Provisional
Probab=22.66 E-value=1.7e+02 Score=28.66 Aligned_cols=30 Identities=30% Similarity=0.473 Sum_probs=22.8
Q ss_pred eEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEE
Q 015531 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVV 317 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VI 317 (405)
|+++||. -+||+| .++.++|++.|++|.++
T Consensus 15 k~~lITG------as~GIG---~~~a~~La~~G~~Vil~ 44 (313)
T PRK05854 15 KRAVVTG------ASDGLG---LGLARRLAAAGAEVILP 44 (313)
T ss_pred CEEEEeC------CCChHH---HHHHHHHHHCCCEEEEE
Confidence 5777775 356666 68899999999988665
No 132
>PLN02256 arogenate dehydrogenase
Probab=22.50 E-value=1.3e+02 Score=30.14 Aligned_cols=34 Identities=24% Similarity=0.538 Sum_probs=27.7
Q ss_pred CCceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeC
Q 015531 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (405)
Q Consensus 276 n~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~ 320 (405)
..|+|.+| |+|-+-+++.++|.+.|++|.++-+.
T Consensus 35 ~~~kI~II-----------G~G~mG~slA~~L~~~G~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIV-----------GFGNFGQFLAKTFVKQGHTVLATSRS 68 (304)
T ss_pred CCCEEEEE-----------eeCHHHHHHHHHHHhCCCEEEEEECc
Confidence 45788876 46777789999999999999988766
No 133
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=22.29 E-value=1.6e+02 Score=27.08 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=28.2
Q ss_pred CCceEEEEecccccccccccHh--HHHhhHHHHHHH-CCCeEEEEe
Q 015531 276 NVMNVILVAAECGPWSKTGGLG--DVAGALPKALAR-RGHRVMVVA 318 (405)
Q Consensus 276 n~MKILfVSSE~aPfaKTGGLG--DVVgSLPKALa~-~GhdV~VIl 318 (405)
..|||+.|++ -.||-| -++..|+.+|++ .|.+|-+|=
T Consensus 33 ~~~~vi~v~s------~kgG~GkSt~a~nLA~~la~~~g~~VLlvD 72 (207)
T TIGR03018 33 KNNNLIMVTS------SLPGEGKSFTAINLAISLAQEYDKTVLLID 72 (207)
T ss_pred CCCeEEEEEC------CCCCCCHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3578888886 335555 578899999996 699998873
No 134
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=22.10 E-value=1.3e+02 Score=27.70 Aligned_cols=33 Identities=36% Similarity=0.705 Sum_probs=26.7
Q ss_pred eEEEEecccccccccccHhH--HHhhHHHHHHHCCCeEEEE
Q 015531 279 NVILVAAECGPWSKTGGLGD--VAGALPKALARRGHRVMVV 317 (405)
Q Consensus 279 KILfVSSE~aPfaKTGGLGD--VVgSLPKALa~~GhdV~VI 317 (405)
||+.|++ --||.|- ++..|+.+|+++|.+|-+|
T Consensus 2 ~ii~v~s------~kGGvGKTt~a~~lA~~la~~g~~vlli 36 (261)
T TIGR01968 2 RVIVITS------GKGGVGKTTTTANLGTALARLGKKVVLI 36 (261)
T ss_pred eEEEEec------CCCCccHHHHHHHHHHHHHHcCCeEEEE
Confidence 4666665 4577876 8899999999999999887
No 135
>PRK05693 short chain dehydrogenase; Provisional
Probab=22.05 E-value=1.2e+02 Score=28.49 Aligned_cols=32 Identities=34% Similarity=0.541 Sum_probs=23.0
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
||+++||. -+||+| .+|.+.|+++|++|.++.
T Consensus 1 mk~vlItG------asggiG---~~la~~l~~~G~~V~~~~ 32 (274)
T PRK05693 1 MPVVLITG------CSSGIG---RALADAFKAAGYEVWATA 32 (274)
T ss_pred CCEEEEec------CCChHH---HHHHHHHHHCCCEEEEEe
Confidence 56666654 245555 678899999999988764
No 136
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=22.05 E-value=1.2e+02 Score=30.06 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=26.3
Q ss_pred CceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEeeC
Q 015531 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (405)
Q Consensus 277 ~MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIlP~ 320 (405)
.|||+++.+ |++|=+.++ .|++.|++|.++...
T Consensus 2 ~m~I~IiGa--------GaiG~~~a~---~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGA--------GSLGSLWAC---RLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECC--------CHHHHHHHH---HHHhCCCCeEEEEec
Confidence 488888876 888876554 488899999999885
No 137
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=21.93 E-value=1.4e+02 Score=29.86 Aligned_cols=38 Identities=26% Similarity=0.464 Sum_probs=30.6
Q ss_pred CceEEEEecccccccccccHhHHHhhHH--HHHHHCC--CeEEEEeeCCC
Q 015531 277 VMNVILVAAECGPWSKTGGLGDVAGALP--KALARRG--HRVMVVAPHYG 322 (405)
Q Consensus 277 ~MKILfVSSE~aPfaKTGGLGDVVgSLP--KALa~~G--hdV~VIlP~Y~ 322 (405)
+||||+|- .+.|||++-++| ..|++.. .++.++.|.+-
T Consensus 1 ~~kIliir--------~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~ 42 (334)
T COG0859 1 MMKILVIR--------LSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGF 42 (334)
T ss_pred CceEEEEe--------ccchhHHHhHHHHHHHHHHHCCCCEEEEEeccch
Confidence 48888875 489999999988 5677776 78888888875
No 138
>PLN02686 cinnamoyl-CoA reductase
Probab=21.55 E-value=1.8e+02 Score=29.33 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.1
Q ss_pred cccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 293 TGGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 293 TGGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
|||-|-+-..|.++|.++|++|.++.
T Consensus 59 TGatGfIG~~lv~~L~~~G~~V~~~~ 84 (367)
T PLN02686 59 TGGVSFLGLAIVDRLLRHGYSVRIAV 84 (367)
T ss_pred ECCchHHHHHHHHHHHHCCCEEEEEe
Confidence 47777788899999999999998764
No 139
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=21.49 E-value=99 Score=30.75 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=27.2
Q ss_pred CCCceEEEEecccccccccccHhHHHhhHH--HHHHHC--CCeEEEEee
Q 015531 275 ANVMNVILVAAECGPWSKTGGLGDVAGALP--KALARR--GHRVMVVAP 319 (405)
Q Consensus 275 ~n~MKILfVSSE~aPfaKTGGLGDVVgSLP--KALa~~--GhdV~VIlP 319 (405)
.++||||+|-. +++||++-++| ++|++. +.++.+++.
T Consensus 3 ~~~~~ILii~~--------~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~ 43 (352)
T PRK10422 3 KPFRRILIIKM--------RFHGDMLLTTPVISSLKKNYPDAKIDVLLY 43 (352)
T ss_pred CCCceEEEEEe--------cccCceeeHHHHHHHHHHHCCCCeEEEEec
Confidence 35689998754 89999998888 566665 567766643
No 140
>PRK08267 short chain dehydrogenase; Provisional
Probab=21.29 E-value=1.3e+02 Score=27.84 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=20.7
Q ss_pred ccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 294 GGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 294 GGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
||-+-+-.+|.+.|+++|++|.++-
T Consensus 8 Gasg~iG~~la~~l~~~G~~V~~~~ 32 (260)
T PRK08267 8 GAASGIGRATALLFAAEGWRVGAYD 32 (260)
T ss_pred CCCchHHHHHHHHHHHCCCeEEEEe
Confidence 6666777889999999999988874
No 141
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=21.27 E-value=68 Score=28.92 Aligned_cols=32 Identities=34% Similarity=0.581 Sum_probs=24.2
Q ss_pred ccccccHhHHHhhHHHHHHHCCCeEEEEeeCC
Q 015531 290 WSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (405)
Q Consensus 290 faKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y 321 (405)
|+-+||+|.+...|.+.|+++|..=-|++-+-
T Consensus 3 ylitGG~gglg~~la~~La~~~~~~~il~~r~ 34 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERGARRLILLGRS 34 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred EEEECCccHHHHHHHHHHHHcCCCEEEEeccC
Confidence 45689999999999999999996444444444
No 142
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=21.14 E-value=1e+02 Score=29.32 Aligned_cols=26 Identities=38% Similarity=0.427 Sum_probs=23.1
Q ss_pred cccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 293 TGGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 293 TGGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
|||-|=+-..|.+.|.++|++|.++.
T Consensus 10 tGatGfIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 10 TGASGYIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred ECChHHHHHHHHHHHHHCCCEEEEEE
Confidence 68888888999999999999998765
No 143
>PLN02572 UDP-sulfoquinovose synthase
Probab=21.10 E-value=1.9e+02 Score=30.15 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=21.4
Q ss_pred cccHhHHHhhHHHHHHHCCCeEEEE
Q 015531 293 TGGLGDVAGALPKALARRGHRVMVV 317 (405)
Q Consensus 293 TGGLGDVVgSLPKALa~~GhdV~VI 317 (405)
|||-|=+-..|.+.|.++|++|.++
T Consensus 53 TGatGfIGs~Lv~~L~~~G~~V~~~ 77 (442)
T PLN02572 53 IGGDGYCGWATALHLSKRGYEVAIV 77 (442)
T ss_pred ECCCcHHHHHHHHHHHHCCCeEEEE
Confidence 4677777788999999999999986
No 144
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=21.08 E-value=73 Score=29.69 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=23.7
Q ss_pred CCCchhhHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 015531 83 GNEPEDSLQATIEKSKKVLAMQKQLLQQISERRK 116 (405)
Q Consensus 83 ~d~~e~~l~atiekskkvla~q~~llqqiaer~k 116 (405)
-||..|..- -.|+++++-|+-|-||+||.|=.
T Consensus 41 ldEEfD~~p--s~~~~~~lr~Rydrlr~va~rvQ 72 (156)
T PF08372_consen 41 LDEEFDTFP--SSRPPDSLRMRYDRLRSVAGRVQ 72 (156)
T ss_pred hhhhhcccc--cccccHHHHHHHHHHHHHHHHHH
Confidence 345445443 35788999999999999999844
No 145
>PRK05993 short chain dehydrogenase; Provisional
Probab=21.01 E-value=1.5e+02 Score=28.10 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=22.9
Q ss_pred ceEEEEecccccccccccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 278 MKILfVSSE~aPfaKTGGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
+|+++|+ ||-+-+-.+|.+.|++.|++|.++-
T Consensus 4 ~k~vlIt---------GasggiG~~la~~l~~~G~~Vi~~~ 35 (277)
T PRK05993 4 KRSILIT---------GCSSGIGAYCARALQSDGWRVFATC 35 (277)
T ss_pred CCEEEEe---------CCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 4566665 4444444778999999999988764
No 146
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=20.91 E-value=91 Score=28.32 Aligned_cols=27 Identities=33% Similarity=0.357 Sum_probs=22.7
Q ss_pred cccHhHHHhhHHHHHHHCCCeEEEEee
Q 015531 293 TGGLGDVAGALPKALARRGHRVMVVAP 319 (405)
Q Consensus 293 TGGLGDVVgSLPKALa~~GhdV~VIlP 319 (405)
|||-|.+-..|.+.|.++|++|.++.-
T Consensus 7 tGa~g~lG~~l~~~l~~~g~~v~~~~r 33 (255)
T TIGR01963 7 TGAASGIGLAIALALAAAGANVVVNDL 33 (255)
T ss_pred cCCcchHHHHHHHHHHHCCCEEEEEeC
Confidence 477777889999999999999888754
No 147
>PRK06953 short chain dehydrogenase; Provisional
Probab=20.69 E-value=1.2e+02 Score=27.48 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=21.2
Q ss_pred cccHhHHHhhHHHHHHHCCCeEEEEe
Q 015531 293 TGGLGDVAGALPKALARRGHRVMVVA 318 (405)
Q Consensus 293 TGGLGDVVgSLPKALa~~GhdV~VIl 318 (405)
|||=+-+-..+.+.|++.|++|.++-
T Consensus 7 tG~sg~iG~~la~~L~~~G~~v~~~~ 32 (222)
T PRK06953 7 VGASRGIGREFVRQYRADGWRVIATA 32 (222)
T ss_pred EcCCCchhHHHHHHHHhCCCEEEEEE
Confidence 46667777889999999999988874
No 148
>PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [].
Probab=20.62 E-value=98 Score=29.33 Aligned_cols=25 Identities=44% Similarity=0.642 Sum_probs=23.3
Q ss_pred cccHhHHHhhHHHHHHHCCCeEEEE
Q 015531 293 TGGLGDVAGALPKALARRGHRVMVV 317 (405)
Q Consensus 293 TGGLGDVVgSLPKALa~~GhdV~VI 317 (405)
+|.+-.|+.+++.+|-++|.+|.++
T Consensus 4 ~G~~sKvaraiA~~LC~rgv~V~m~ 28 (164)
T PF12076_consen 4 TGNTSKVARAIALALCRRGVQVVML 28 (164)
T ss_pred cccccHHHHHHHHHHHhcCCEEEEe
Confidence 6889999999999999999999887
No 149
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=20.58 E-value=85 Score=29.42 Aligned_cols=31 Identities=29% Similarity=0.326 Sum_probs=25.5
Q ss_pred ccccHhHHHhhHHHHHHHCCCeEEEEeeCCC
Q 015531 292 KTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (405)
Q Consensus 292 KTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~ 322 (405)
-|||-|=|=..|.+.|.++||+|.++.....
T Consensus 5 VtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~ 35 (314)
T COG0451 5 VTGGAGFIGSHLVERLLAAGHDVRGLDRLRD 35 (314)
T ss_pred EEcCcccHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 3566666669999999999999999987554
No 150
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.47 E-value=97 Score=27.69 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=21.4
Q ss_pred cccHhHHHhhHHHHHHHCCCeEEEEee
Q 015531 293 TGGLGDVAGALPKALARRGHRVMVVAP 319 (405)
Q Consensus 293 TGGLGDVVgSLPKALa~~GhdV~VIlP 319 (405)
|||-|-+-..|.+.|.++|++|.++..
T Consensus 12 tGasg~iG~~l~~~l~~~g~~v~~~~~ 38 (249)
T PRK12825 12 TGAARGLGRAIALRLARAGADVVVHYR 38 (249)
T ss_pred eCCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 467777778999999999999866443
No 151
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=20.24 E-value=88 Score=28.68 Aligned_cols=35 Identities=31% Similarity=0.346 Sum_probs=30.4
Q ss_pred ccccccHhHHHhhHHHHHHHCCCeEEEEeeCCCCC
Q 015531 290 WSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (405)
Q Consensus 290 faKTGGLGDVVgSLPKALa~~GhdV~VIlP~Y~~i 324 (405)
++.+||=|-+-+.+-++|.+.|++|+++.+.-...
T Consensus 3 ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~ 37 (275)
T COG0702 3 ILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAA 37 (275)
T ss_pred EEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHH
Confidence 45678888999999999999999999999986644
Done!