BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015533
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g
Length = 392
Score = 297 bits (760), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 145/315 (46%), Positives = 202/315 (64%), Gaps = 5/315 (1%)
Query: 63 DVPSSEKLNLFIKKTQLCCVLCDF-NDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQM 121
DVP +++ LFI+K + CCVL DF +DP + KE+K L E+V++I + + I E +
Sbjct: 44 DVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPI 103
Query: 122 QENLMRMISINIFRALPPAFHENTGSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRYIVS 181
++ M ++N+FR LPP+ + +P+E++ LE AWPHLQLVYE LR++ S
Sbjct: 104 YPEVVHMFAVNMFRTLPPSSNPTGAEF----DPEEDEPTLEAAWPHLQLVYEFFLRFLES 159
Query: 182 NGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRAGINNV 241
IAK+YID FVL+LL+LFD+ED RER++LK LHRIYG+F+ R +IR INN+
Sbjct: 160 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 219
Query: 242 FYRFIFETERHXXXXXXXXXXXXXXXXFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQL 301
FYRFI+ETE H FALP+KEEHK+ L++ +LPLHK K +++YH QL
Sbjct: 220 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 279
Query: 302 TYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKXXXXXXXXXXXXXXTHPAEFQQCMGPL 361
YCVVQF+EKD L + V+ LL+YWP T+ K P+EF + M PL
Sbjct: 280 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 339
Query: 362 FRQIGRCLTSPHFQV 376
FRQ+ +C++SPHFQV
Sbjct: 340 FRQLAKCVSSPHFQV 354
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|E Chain E, Structure Of The Protein Phosphatase 2a Holoenzyme
Length = 449
Score = 296 bits (758), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 145/315 (46%), Positives = 202/315 (64%), Gaps = 5/315 (1%)
Query: 63 DVPSSEKLNLFIKKTQLCCVLCDF-NDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQM 121
DVP +++ LFI+K + CCVL DF +DP + KE+K L E+V++I + + I E +
Sbjct: 32 DVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPI 91
Query: 122 QENLMRMISINIFRALPPAFHENTGSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRYIVS 181
++ M ++N+FR LPP+ + +P+E++ LE AWPHLQLVYE LR++ S
Sbjct: 92 YPEVVHMFAVNMFRTLPPSSNPTGAEF----DPEEDEPTLEAAWPHLQLVYEFFLRFLES 147
Query: 182 NGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRAGINNV 241
IAK+YID FVL+LL+LFD+ED RER++LK LHRIYG+F+ R +IR INN+
Sbjct: 148 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 207
Query: 242 FYRFIFETERHXXXXXXXXXXXXXXXXFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQL 301
FYRFI+ETE H FALP+KEEHK+ L++ +LPLHK K +++YH QL
Sbjct: 208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 267
Query: 302 TYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKXXXXXXXXXXXXXXTHPAEFQQCMGPL 361
YCVVQF+EKD L + V+ LL+YWP T+ K P+EF + M PL
Sbjct: 268 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 327
Query: 362 FRQIGRCLTSPHFQV 376
FRQ+ +C++SPHFQV
Sbjct: 328 FRQLAKCVSSPHFQV 342
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|E Chain E, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme
Length = 407
Score = 296 bits (757), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 145/315 (46%), Positives = 202/315 (64%), Gaps = 5/315 (1%)
Query: 63 DVPSSEKLNLFIKKTQLCCVLCDF-NDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQM 121
DVP +++ LFI+K + CCVL DF +DP + KE+K L E+V++I + + I E +
Sbjct: 3 DVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPI 62
Query: 122 QENLMRMISINIFRALPPAFHENTGSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRYIVS 181
++ M ++N+FR LPP+ + +P+E++ LE AWPHLQLVYE LR++ S
Sbjct: 63 YPEVVHMFAVNMFRTLPPSSNPTGAEF----DPEEDEPTLEAAWPHLQLVYEFFLRFLES 118
Query: 182 NGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRAGINNV 241
IAK+YID FVL+LL+LFD+ED RER++LK LHRIYG+F+ R +IR INN+
Sbjct: 119 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 178
Query: 242 FYRFIFETERHXXXXXXXXXXXXXXXXFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQL 301
FYRFI+ETE H FALP+KEEHK+ L++ +LPLHK K +++YH QL
Sbjct: 179 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 238
Query: 302 TYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKXXXXXXXXXXXXXXTHPAEFQQCMGPL 361
YCVVQF+EKD L + V+ LL+YWP T+ K P+EF + M PL
Sbjct: 239 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 298
Query: 362 FRQIGRCLTSPHFQV 376
FRQ+ +C++SPHFQV
Sbjct: 299 FRQLAKCVSSPHFQV 313
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction
Length = 403
Score = 291 bits (746), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 143/313 (45%), Positives = 200/313 (63%), Gaps = 5/313 (1%)
Query: 65 PSSEKLNLFIKKTQLCCVLCDF-NDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQMQE 123
P +++ LFI+K + CCVL DF +DP + KE+K L E+V++I + + I E +
Sbjct: 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYP 60
Query: 124 NLMRMISINIFRALPPAFHENTGSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRYIVSNG 183
++ M ++N+FR LPP+ + +P+E++ LE AWPHLQLVYE LR++ S
Sbjct: 61 EVVHMFAVNMFRTLPPSSNPTGAEF----DPEEDEPTLEAAWPHLQLVYEFFLRFLESPD 116
Query: 184 ADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRAGINNVFY 243
IAK+YID FVL+LL+LFD+ED RER++LK LHRIYG+F+ R +IR INN+FY
Sbjct: 117 FQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFY 176
Query: 244 RFIFETERHXXXXXXXXXXXXXXXXFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQLTY 303
RFI+ETE H FALP+KEEHK+ L++ +LPLHK K +++YH QL Y
Sbjct: 177 RFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAY 236
Query: 304 CVVQFVEKDYELADTVIRGLLRYWPVTNCQKXXXXXXXXXXXXXXTHPAEFQQCMGPLFR 363
CVVQF+EKD L + V+ LL+YWP T+ K P+EF + M PLFR
Sbjct: 237 CVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFR 296
Query: 364 QIGRCLTSPHFQV 376
Q+ +C++SPHFQV
Sbjct: 297 QLAKCVSSPHFQV 309
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 388
Score = 282 bits (721), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 141/306 (46%), Positives = 193/306 (63%), Gaps = 5/306 (1%)
Query: 72 LFIKKTQLCCVLCDF-NDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQMQENLMRMIS 130
LFI+K + CCVL DF +DP + KE+K L E V++I + + I E + ++ +
Sbjct: 4 LFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEXVEYITHNRNVITEPIYPEVVHXFA 63
Query: 131 INIFRALPPAFHENTGSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRYIVSNGADKKIAK 190
+N FR LPP+ + +P+E++ LE AWPHLQLVYE LR++ S IAK
Sbjct: 64 VNXFRTLPPSSNPTGAEF----DPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAK 119
Query: 191 RYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRAGINNVFYRFIFETE 250
+YID FVL+LL+LFD+ED RER++LK LHRIYG+F+ R +IR INN+FYRFI+ETE
Sbjct: 120 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETE 179
Query: 251 RHXXXXXXXXXXXXXXXXFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVE 310
H FALP+KEEHK+ L++ +LPLHK K +++YH QL YCVVQF+E
Sbjct: 180 HHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLE 239
Query: 311 KDYELADTVIRGLLRYWPVTNCQKXXXXXXXXXXXXXXTHPAEFQQCMGPLFRQIGRCLT 370
KD L + V+ LL+YWP T+ K P+EF + PLFRQ+ +C++
Sbjct: 240 KDSTLTEPVVXALLKYWPKTHSPKEVXFLNELEEILDVIEPSEFVKIXEPLFRQLAKCVS 299
Query: 371 SPHFQV 376
SPHFQV
Sbjct: 300 SPHFQV 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,043,572
Number of Sequences: 62578
Number of extensions: 351191
Number of successful extensions: 934
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 6
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)