Query 015533
Match_columns 405
No_of_seqs 146 out of 282
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 14:16:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jak_A Serine/threonine-protei 100.0 2E-121 8E-126 927.1 34.5 336 55-394 36-372 (392)
2 3fga_B Serine/threonine-protei 100.0 4E-119 2E-123 913.3 34.6 326 65-394 1-327 (403)
3 2npp_B PP2A, B subunit, serine 100.0 4E-120 1E-124 933.1 24.3 336 55-394 24-360 (449)
4 2qk1_A Protein STU2; STU2P, XM 93.6 2.2 7.4E-05 39.6 15.4 178 203-382 23-213 (249)
5 2qk2_A LP04448P; mini spindles 93.2 3.7 0.00012 36.9 16.0 177 201-382 20-198 (242)
6 1ibr_B P95, importin beta-1 su 92.2 2.2 7.5E-05 41.1 13.7 173 198-385 3-199 (462)
7 2km4_A Regulator of TY1 transp 82.5 4.6 0.00016 34.7 8.1 86 306-391 26-120 (142)
8 1qgr_A Protein (importin beta 82.2 45 0.0015 34.9 17.1 188 197-385 218-433 (876)
9 1qgr_A Protein (importin beta 80.9 15 0.0005 38.6 12.8 107 273-385 83-199 (876)
10 1u6g_C TIP120 protein, CAND1; 79.5 83 0.0028 35.0 18.9 246 96-382 20-277 (1230)
11 2bpt_A Importin beta-1 subunit 77.4 73 0.0025 33.2 17.6 186 197-383 225-434 (861)
12 4fu3_A Regulation of nuclear P 76.9 6.7 0.00023 32.8 7.2 84 305-388 26-115 (135)
13 2bpt_A Importin beta-1 subunit 73.9 56 0.0019 34.0 14.8 112 273-385 88-206 (861)
14 4fdd_A Transportin-1; heat rep 73.6 31 0.001 36.8 12.9 179 198-385 15-199 (852)
15 2jdq_A Importin alpha-1 subuni 72.2 42 0.0014 31.9 12.4 195 186-386 97-302 (450)
16 2x19_B Importin-13; nuclear tr 71.3 81 0.0028 33.9 15.7 152 199-386 689-843 (963)
17 4hxt_A De novo protein OR329; 69.4 55 0.0019 28.2 12.9 190 186-386 34-238 (252)
18 2vgl_B AP-2 complex subunit be 68.5 55 0.0019 33.6 13.1 175 196-385 353-528 (591)
19 4fdd_A Transportin-1; heat rep 63.0 1.6E+02 0.0054 31.2 17.1 189 190-382 478-692 (852)
20 1wa5_B Importin alpha subunit; 60.9 72 0.0025 31.7 12.0 194 186-386 163-367 (530)
21 1u6g_C TIP120 protein, CAND1; 59.3 1.8E+02 0.0062 32.2 15.9 179 197-383 7-198 (1230)
22 1ibr_B P95, importin beta-1 su 54.8 1.4E+02 0.0049 28.1 16.7 48 337-384 385-432 (462)
23 1sz9_A PCF11 protein; RNA poly 53.1 35 0.0012 29.3 7.1 89 299-387 24-115 (144)
24 4b8j_A Importin subunit alpha- 44.4 2.4E+02 0.0082 27.7 13.6 107 186-293 150-257 (528)
25 2jdq_A Importin alpha-1 subuni 42.8 1.1E+02 0.0036 29.0 9.4 23 159-181 9-31 (450)
26 4db8_A Armadillo-repeat protei 41.3 1.7E+02 0.0059 25.2 12.5 186 189-386 47-248 (252)
27 4b8j_A Importin subunit alpha- 41.2 2.4E+02 0.0082 27.7 12.0 182 198-386 76-270 (528)
28 4flb_A Regulation of nuclear P 40.6 1E+02 0.0034 25.4 7.8 83 305-387 27-113 (132)
29 3m1i_C Exportin-1; heat repeat 40.6 1.3E+02 0.0046 32.9 10.9 186 196-384 589-828 (1049)
30 1xqr_A HSPBP1 protein; armadil 40.0 2.4E+02 0.0083 26.5 14.2 99 167-269 56-156 (296)
31 4db6_A Armadillo repeat protei 39.3 1.7E+02 0.0058 24.5 13.6 180 195-386 11-206 (210)
32 2x1g_F Cadmus; transport prote 38.4 2.5E+02 0.0084 30.2 12.5 215 164-384 540-809 (971)
33 3ibv_A Exportin-T; karyopherin 34.2 45 0.0015 37.1 5.8 80 199-288 705-785 (980)
34 1wa5_B Importin alpha subunit; 33.5 2.7E+02 0.0091 27.4 11.0 29 198-226 89-117 (530)
35 3m1i_C Exportin-1; heat repeat 32.6 2.3E+02 0.0078 31.1 11.2 108 272-384 83-219 (1049)
36 4db8_A Armadillo-repeat protei 31.8 2.5E+02 0.0085 24.2 9.6 69 199-268 15-84 (252)
37 1oks_A RNA polymerase alpha su 29.7 61 0.0021 23.7 3.9 45 260-306 5-49 (56)
38 2vgl_A Adaptor protein complex 28.8 5E+02 0.017 26.8 12.5 78 303-385 502-585 (621)
39 3ldz_A STAM-1, signal transduc 26.3 2.9E+02 0.0099 23.2 8.6 75 304-385 28-110 (140)
40 3ibv_A Exportin-T; karyopherin 25.7 94 0.0032 34.5 6.5 107 277-383 82-216 (980)
41 3d9j_A RNA-binding protein 16; 25.6 1.4E+02 0.0049 25.3 6.4 74 311-385 35-118 (145)
42 3ul1_B Importin subunit alpha- 25.4 4.9E+02 0.017 25.7 11.4 109 185-293 132-245 (510)
43 3u0r_A Apoptosis inhibitor 5; 24.3 6.1E+02 0.021 26.3 16.4 73 299-371 239-323 (507)
44 3bbz_A P protein, phosphoprote 23.4 77 0.0026 22.8 3.4 31 64-103 15-45 (49)
45 1xl3_C Protein type A, secreti 22.2 77 0.0026 25.7 3.7 42 315-356 21-62 (92)
No 1
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=2.4e-121 Score=927.12 Aligned_cols=336 Identities=52% Similarity=0.920 Sum_probs=312.4
Q ss_pred ccCCCCCCCCCchHhHHHHHHHHhhccccccc-cCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHh
Q 015533 55 IQNLPKFNDVPSSEKLNLFIKKTQLCCVLCDF-NDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQMQENLMRMISINI 133 (405)
Q Consensus 55 ~~~lp~l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NI 133 (405)
+++||+|+|++++++++||++||++||++||| +||.+|+++||+||+||+||++|++++++.+||++++++++||++||
T Consensus 36 ~~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~Ni 115 (392)
T 2jak_A 36 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNM 115 (392)
T ss_dssp ------CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence 56999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCccccCCCCchhHHHHHHHHHHHhhcCCChHHHhhcCCHHHHHHHhhccCCCChhHH
Q 015533 134 FRALPPAFHENTGSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKLLDLFDTEDHRER 213 (405)
Q Consensus 134 FR~lPp~~~~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fi~~Ll~lfdS~DpRER 213 (405)
||++||.+++++ ..||+|||||+.|++|||||+||++|+||++|++|+++.||+|||++|+.+|+++|+|||||||
T Consensus 116 FR~lPp~~~~~~----~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRER 191 (392)
T 2jak_A 116 FRTLPPSSNPTG----AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRER 191 (392)
T ss_dssp CSCCCC-------------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHH
T ss_pred CCCCCCCCCccc----ccCCccccccccccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHH
Confidence 999999876542 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhhcCCCCCc
Q 015533 214 EYLKMVLHRIYGRFMSHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKEEHKLLLVRAMLPLHKPKC 293 (405)
Q Consensus 214 d~LktiLhrIY~Kf~~~R~fIRk~i~nif~~fi~e~~~~nGIaELLeilgSIInGFa~PLKeEhk~fl~~vLiPLHk~~~ 293 (405)
|+||++||||||||+++|+||||+|+|+|++||||+++||||+|||||+||||||||+|||+||+.||.|||+||||+++
T Consensus 192 d~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~ 271 (392)
T 2jak_A 192 DFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKS 271 (392)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHhCcccHHHHHHHHhhhCCCCCchhHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhhCCCc
Q 015533 294 VALYHQQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSPH 373 (405)
Q Consensus 294 l~~y~~qL~yci~qF~eKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~~f~~i~~plF~~la~ci~S~h 373 (405)
++.||+||+||++||++|||+|+++|++||+||||+||++|||+||+|||+||+.+++++|+++++|+|++||+|++|+|
T Consensus 272 l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~h 351 (392)
T 2jak_A 272 LSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPH 351 (392)
T ss_dssp GGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhcccccccccc
Q 015533 374 FQVHIIVTSLIYMSCYCSAVS 394 (405)
Q Consensus 374 fqVAErAl~i~~n~~f~~~~~ 394 (405)
||||||||.+|+|++|+++++
T Consensus 352 fqVAErAL~~wnNe~i~~li~ 372 (392)
T 2jak_A 352 FQVAERALYYWNNEYIMSLIS 372 (392)
T ss_dssp HHHHHHHHGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHH
Confidence 999999999999999999986
No 2
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=100.00 E-value=4.5e-119 Score=913.30 Aligned_cols=326 Identities=52% Similarity=0.943 Sum_probs=320.1
Q ss_pred CchHhHHHHHHHHhhccccccc-cCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHhccCCCCCCCC
Q 015533 65 PSSEKLNLFIKKTQLCCVLCDF-NDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQMQENLMRMISINIFRALPPAFHE 143 (405)
Q Consensus 65 ~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NIFR~lPp~~~~ 143 (405)
|++||++||++||++||++||| +||.+|+++||+||+||+||++|++++++.+||++++++++||++||||++||.+++
T Consensus 1 ~~~e~~~lf~~Kl~~C~~ifDF~~d~~~d~~~Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~NiFR~lPp~~~~ 80 (403)
T 3fga_B 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNP 80 (403)
T ss_dssp CCSHHHHHHHHHHHHTTCCCCSSSSTTTTHHHHHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHHHCCCCCCCSSC
T ss_pred ChhHHHHHHHHHHHHhCCccCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 5789999999999999999999 899999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCccccCCCCchhHHHHHHHHHHHhhcCCChHHHhhcCCHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 015533 144 NTGSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRI 223 (405)
Q Consensus 144 ~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fi~~Ll~lfdS~DpRERd~LktiLhrI 223 (405)
++ ..||+|||||++|++|||||+||++|+||++|+++|+++||+|||++||.+|+++|||+||||||+|||+||||
T Consensus 81 ~~----~~~d~eedep~~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrI 156 (403)
T 3fga_B 81 TG----AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRI 156 (403)
T ss_dssp CS----TTCCGGGCCCCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred cc----ccCCccccccccccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 42 57999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccchHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhhcCCCCCchhhchhHHHH
Q 015533 224 YGRFMSHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQLTY 303 (405)
Q Consensus 224 Y~Kf~~~R~fIRk~i~nif~~fi~e~~~~nGIaELLeilgSIInGFa~PLKeEhk~fl~~vLiPLHk~~~l~~y~~qL~y 303 (405)
||||+++|+|||++|||+|++||||+++||||||||||+||||||||+|||+||+.||.||||||||+++++.||+||+|
T Consensus 157 Y~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~y 236 (403)
T 3fga_B 157 YGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAY 236 (403)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCcccHHHHHHHHhhhCCCCCchhHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhhCCCchHHHHHHHhh
Q 015533 304 CVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSPHFQVHIIVTSL 383 (405)
Q Consensus 304 ci~qF~eKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~~f~~i~~plF~~la~ci~S~hfqVAErAl~i 383 (405)
|++||++|||+|++++++||+||||+|||+|||+||+||++||+.+++++|+++++|+|++||+|++|+|||||||||.+
T Consensus 237 cv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~ 316 (403)
T 3fga_B 237 CVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYY 316 (403)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGG
T ss_pred HHHHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccc
Q 015533 384 IYMSCYCSAVS 394 (405)
Q Consensus 384 ~~n~~f~~~~~ 394 (405)
|+|++|+++++
T Consensus 317 wnNe~i~~li~ 327 (403)
T 3fga_B 317 WNNEYIMSLIS 327 (403)
T ss_dssp GGCHHHHHHHH
T ss_pred hccHHHHHHHH
Confidence 99999999875
No 3
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=3.7e-120 Score=933.08 Aligned_cols=336 Identities=52% Similarity=0.920 Sum_probs=316.7
Q ss_pred ccCCCCCCCCCchHhHHHHHHHHhhccccccc-cCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHh
Q 015533 55 IQNLPKFNDVPSSEKLNLFIKKTQLCCVLCDF-NDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQMQENLMRMISINI 133 (405)
Q Consensus 55 ~~~lp~l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NI 133 (405)
+++||+|+|++++++++||++||++||++||| +||.+|+++||+||+||+||++|++++++.+||++++++++||++||
T Consensus 24 ~~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~Ni 103 (449)
T 2npp_B 24 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNM 103 (449)
T ss_dssp --------------CCCCTTTHHHHHHHHHHHCCCCSSSCCCCCSHHHHHHHHHHHHHSSCCSCCCSSCCHHHHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence 45999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCccccCCCCchhHHHHHHHHHHHhhcCCChHHHhhcCCHHHHHHHhhccCCCChhHH
Q 015533 134 FRALPPAFHENTGSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKLLDLFDTEDHRER 213 (405)
Q Consensus 134 FR~lPp~~~~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fi~~Ll~lfdS~DpRER 213 (405)
||++||.+++++ ..||+|||||+.|++|||||+||++|+||++|++||++.||+|||++||.+|+++|||||||||
T Consensus 104 FR~lPp~~~~~~----~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRER 179 (449)
T 2npp_B 104 FRTLPPSSNPTG----AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRER 179 (449)
T ss_dssp CCCCCCCSSCCS----SSSCGGGCCCCCCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHH
T ss_pred CCCCCCCCCccc----ccCCCccccccccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHH
Confidence 999999876542 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhhcCCCCCc
Q 015533 214 EYLKMVLHRIYGRFMSHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKEEHKLLLVRAMLPLHKPKC 293 (405)
Q Consensus 214 d~LktiLhrIY~Kf~~~R~fIRk~i~nif~~fi~e~~~~nGIaELLeilgSIInGFa~PLKeEhk~fl~~vLiPLHk~~~ 293 (405)
|+|||+||||||||+++|+|||++|+|+|++||||+++||||+|||||+|||||||++|||+||+.||.||||||||+++
T Consensus 180 d~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~ 259 (449)
T 2npp_B 180 DFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKS 259 (449)
T ss_dssp HHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHhCcccHHHHHHHHhhhCCCCCchhHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhhCCCc
Q 015533 294 VALYHQQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSPH 373 (405)
Q Consensus 294 l~~y~~qL~yci~qF~eKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~~f~~i~~plF~~la~ci~S~h 373 (405)
++.||+||+||++||++|||+|+++|++||+||||+||++|||+||+||++||+.+++++|+++++|+|++||+|++|+|
T Consensus 260 l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~h 339 (449)
T 2npp_B 260 LSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPH 339 (449)
T ss_dssp GGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred hHHhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhcccccccccc
Q 015533 374 FQVHIIVTSLIYMSCYCSAVS 394 (405)
Q Consensus 374 fqVAErAl~i~~n~~f~~~~~ 394 (405)
||||||||.+|+|++|+++++
T Consensus 340 fqVAErAL~~w~N~~i~~li~ 360 (449)
T 2npp_B 340 FQVAERALYYWNNEYIMSLIS 360 (449)
T ss_dssp HHHHHHHHGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHH
Confidence 999999999999999999875
No 4
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.60 E-value=2.2 Score=39.64 Aligned_cols=178 Identities=7% Similarity=0.066 Sum_probs=119.8
Q ss_pred hccCCCChhHHHHHHHHHHH-Hhh---ccccchHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHhccC-CCcHHHH
Q 015533 203 DLFDTEDHREREYLKMVLHR-IYG---RFMSHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFA-LPMKEEH 277 (405)
Q Consensus 203 ~lfdS~DpRERd~LktiLhr-IY~---Kf~~~R~fIRk~i~nif~~fi~e~~~~nGIaELLeilgSIInGFa-~PLKeEh 277 (405)
+.+.|.+.+||...-.-|.. +-. +...+..-.. .+-+.+...+-.+.+..-+..-+.++|.+.+|+. ..+...|
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~-~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYS-NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 34478999999887777777 653 3331011001 1223334444223333335678899999999998 6665244
Q ss_pred HHHHHHHhhcCCCCCchhhchhHHHHHHHHHHHhC-c----ccHHHHHHHHhhhCCCCCchhHHHHHHHHHHHhhcCCh-
Q 015533 278 KLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKD-Y----ELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHP- 351 (405)
Q Consensus 278 k~fl~~vLiPLHk~~~l~~y~~qL~yci~qF~eKD-p----~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~- 351 (405)
..-+.-.|+..++.+.-. =-....+++..+++.= | .-.+.++.-|+..+-..|++=....+.-|..+++....
T Consensus 102 ~~~llp~ll~~l~dkk~~-V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 102 VSLVFTPLLDRTKEKKPS-VIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHGGGCCCHH-HHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 444556777777776532 3356778888888753 2 21346777777777666777677888889999987764
Q ss_pred -hHHHHHH-HHHHHHHHHhhCCCchHHHHHHHh
Q 015533 352 -AEFQQCM-GPLFRQIGRCLTSPHFQVHIIVTS 382 (405)
Q Consensus 352 -~~f~~i~-~plF~~la~ci~S~hfqVAErAl~ 382 (405)
..|.+.+ ..+...+.+|++..+-.|=++|..
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~ 213 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFE 213 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7888888 899999999999999888888754
No 5
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=93.24 E-value=3.7 Score=36.93 Aligned_cols=177 Identities=12% Similarity=0.051 Sum_probs=113.8
Q ss_pred HhhccCCCChhHHHHHHHHHHHHhhcccc-chHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHhccCCCcHHHHHH
Q 015533 201 LLDLFDTEDHREREYLKMVLHRIYGRFMS-HRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKEEHKL 279 (405)
Q Consensus 201 Ll~lfdS~DpRERd~LktiLhrIY~Kf~~-~R~fIRk~i~nif~~fi~e~~~~nGIaELLeilgSIInGFa~PLKeEhk~ 279 (405)
+.+.++|.|.+||...-.-|..+-..... ...... .+-+.+.+.+-.+...+-....+..+|.+.++....+...+..
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~-~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ 98 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYG-ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA 98 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 55667899999998877777776554211 011122 2233444444212233334577888888888776555443444
Q ss_pred HHHHHhhcCCCCCchhhchhHHHHHHHHHHHhCcccHHHHHHHHhhhCCCCCchhHHHHHHHHHHHhhcCChh-HHHHHH
Q 015533 280 LLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPA-EFQQCM 358 (405)
Q Consensus 280 fl~~vLiPLHk~~~l~~y~~qL~yci~qF~eKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~-~f~~i~ 358 (405)
+...|+...+.+.-. -.+....++..+++.-+ ...++..++...--.|++=...-+.-|..++...+++ .+...+
T Consensus 99 -ilp~ll~~l~d~~~~-vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 99 -CVPSLLEKFKEKKPN-VVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp -HHHHHHHGGGCCCHH-HHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred -HHHHHHHHHcCCCHH-HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 455666666655432 33456677777766532 3567777777776666665666778888888887665 467777
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHh
Q 015533 359 GPLFRQIGRCLTSPHFQVHIIVTS 382 (405)
Q Consensus 359 ~plF~~la~ci~S~hfqVAErAl~ 382 (405)
..+...|..|++..+..|=+.|..
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~ 198 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAE 198 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHH
Confidence 888999999999999988887754
No 6
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=92.17 E-value=2.2 Score=41.05 Aligned_cols=173 Identities=11% Similarity=0.109 Sum_probs=100.5
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHhhc-ccc-------------chHHHHHHHHHHHHHhhhcccCccCHHHHHHHHH
Q 015533 198 VLKLLDLFDTEDHREREYLKMVLHRIYGR-FMS-------------HRPFIRAGINNVFYRFIFETERHNGIGELLEILG 263 (405)
Q Consensus 198 i~~Ll~lfdS~DpRERd~LktiLhrIY~K-f~~-------------~R~fIRk~i~nif~~fi~e~~~~nGIaELLeilg 263 (405)
+.+++..+.|+|+..|......|..+... ..+ ...-+|+...-+|-+++..... .+-.+...
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~-~~~~~~~~--- 78 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDP-DIKAQYQQ--- 78 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSH-HHHHHHHH---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccch-HHHHHHHh---
Confidence 45677777788888887777666654431 111 1233444444444444411100 00000000
Q ss_pred HHHhccCCCcHHHHHHHHHHHhhcCCCCCchhhchhHHHHHHHHHHHhC------cccHHHHHHHHhhhCCCC--CchhH
Q 015533 264 SIINGFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKD------YELADTVIRGLLRYWPVT--NCQKE 335 (405)
Q Consensus 264 SIInGFa~PLKeEhk~fl~~vLiPLHk~~~l~~y~~qL~yci~qF~eKD------p~L~~~vi~~LLk~WP~t--ns~KE 335 (405)
. + ..+.++.+..+...|+++.....-.. .++..|+......+ |.+...++..+- -. +....
T Consensus 79 -~---~-~~l~~~~~~~ik~~ll~~l~~~~~~v--~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~----~~~~~~~~r 147 (462)
T 1ibr_B 79 -R---W-LAIDANARREVKNYVLQTLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVT----NPNSTEHMK 147 (462)
T ss_dssp -H---H-HTSCHHHHHHHHHHHHHHTTCCCSSS--CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH----CTTCCHHHH
T ss_pred -h---h-hcCCHHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHHHHhccccccHHHHHHHHHHhc----cCCCCHHHH
Confidence 0 1 23567788888888888877665444 77999988876554 233333333332 22 33333
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhhCCC--chHHHHHHHhhhc
Q 015533 336 VLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSP--HFQVHIIVTSLIY 385 (405)
Q Consensus 336 vlFL~EleeiLe~~~~~~f~~i~~plF~~la~ci~S~--hfqVAErAl~i~~ 385 (405)
..-+.-+..+.+...++.+......++..+..|++++ +..|-..|+..+.
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~ 199 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALL 199 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 3455667777776656667788888999999999998 7777777765553
No 7
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=82.51 E-value=4.6 Score=34.68 Aligned_cols=86 Identities=14% Similarity=0.126 Sum_probs=64.9
Q ss_pred HHHHHhCcccHHHHHHHHhhhCCCC--CchhHHHHHHHHHHHhhcCC-------hhHHHHHHHHHHHHHHHhhCCCchHH
Q 015533 306 VQFVEKDYELADTVIRGLLRYWPVT--NCQKEVLFLGELEEVLDVTH-------PAEFQQCMGPLFRQIGRCLTSPHFQV 376 (405)
Q Consensus 306 ~qF~eKDp~L~~~vi~~LLk~WP~t--ns~KEvlFL~EleeiLe~~~-------~~~f~~i~~plF~~la~ci~S~hfqV 376 (405)
.+++-.+..-+..++..+.++==.. ++.|.+-+|.-+.+|+..+- -..|.++++++|..+....++..-+.
T Consensus 26 s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~~~~~~~~~~~~~~~~k 105 (142)
T 2km4_A 26 SKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKK 105 (142)
T ss_dssp HHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455455555666666666655544 67899999999999997553 24789999999999999888889999
Q ss_pred HHHHHhhhccccccc
Q 015533 377 HIIVTSLIYMSCYCS 391 (405)
Q Consensus 377 AErAl~i~~n~~f~~ 391 (405)
.+|-+.+|..-.+-+
T Consensus 106 v~rvl~iWeer~vf~ 120 (142)
T 2km4_A 106 LSRVVNILKERNIFS 120 (142)
T ss_dssp HHHHHHHHHHHTCSC
T ss_pred HHHHHHHhhccCCcC
Confidence 999999997654443
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=82.21 E-value=45 Score=34.87 Aligned_cols=188 Identities=8% Similarity=0.017 Sum_probs=97.3
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHHhhcccc-chHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHhccC-----
Q 015533 197 FVLKLLDLFDTEDHREREYLKMVLHRIYGRFMS-HRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFA----- 270 (405)
Q Consensus 197 Fi~~Ll~lfdS~DpRERd~LktiLhrIY~Kf~~-~R~fIRk~i~nif~~fi~e~~~~nGIaELLeilgSIInGFa----- 270 (405)
++.-+...++++|++.|...-.+|.++...+.. .++++.+.+-..+.....+ ....-....++++..+.....
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~al~~l~~l~~~~~~~~~~ 296 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIE 296 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHhHhhh
Confidence 455566677889999998888888887775544 3455552222333332211 111112355666666543210
Q ss_pred ------------CCcH---HHHHHHHHHHhhcCCCCC------chhhchhHHHHHHHHHHHhCc-ccHHHHHHHHhhhCC
Q 015533 271 ------------LPMK---EEHKLLLVRAMLPLHKPK------CVALYHQQLTYCVVQFVEKDY-ELADTVIRGLLRYWP 328 (405)
Q Consensus 271 ------------~PLK---eEhk~fl~~vLiPLHk~~------~l~~y~~qL~yci~qF~eKDp-~L~~~vi~~LLk~WP 328 (405)
.+.. ..|..-+...++.+.... .-......-..|+....+.-+ .....++..+....-
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~ 376 (876)
T 1qgr_A 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK 376 (876)
T ss_dssp HHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTT
T ss_pred hccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHcc
Confidence 0110 011111222233332210 000111122233333332222 344555555554443
Q ss_pred CCCchhHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhhCCCchHHHHHHHhhhc
Q 015533 329 VTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSPHFQVHIIVTSLIY 385 (405)
Q Consensus 329 ~tns~KEvlFL~EleeiLe~~~~~~f~~i~~plF~~la~ci~S~hfqVAErAl~i~~ 385 (405)
-.+....-.-+.-+..+.+.+.++.+...+..+...+-.+++++|..|-++|+..+.
T Consensus 377 ~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~ 433 (876)
T 1qgr_A 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG 433 (876)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334333344455666677777777777777888888999999999999888876654
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=80.93 E-value=15 Score=38.64 Aligned_cols=107 Identities=10% Similarity=0.109 Sum_probs=69.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCchhhchhHHHHHHHHHHHhC------cccHHHHHHHHhhhCCCC--CchhHHHHHHHHHH
Q 015533 273 MKEEHKLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKD------YELADTVIRGLLRYWPVT--NCQKEVLFLGELEE 344 (405)
Q Consensus 273 LKeEhk~fl~~vLiPLHk~~~l~~y~~qL~yci~qF~eKD------p~L~~~vi~~LLk~WP~t--ns~KEvlFL~Elee 344 (405)
+.++.+..+...|+.......-.. .++.+|+......+ |.+...++..+- .. +..-...-|.-+..
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~--~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~----~~~~~~~~r~~al~~l~~ 156 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVT----NPNSTEHMKESTLEAIGY 156 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS--CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH----CTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHHhhCcccccHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHH
Confidence 557777777777877766554434 66788887765443 333333333321 12 22223345567777
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHhhCCC--chHHHHHHHhhhc
Q 015533 345 VLDVTHPAEFQQCMGPLFRQIGRCLTSP--HFQVHIIVTSLIY 385 (405)
Q Consensus 345 iLe~~~~~~f~~i~~plF~~la~ci~S~--hfqVAErAl~i~~ 385 (405)
+.+.+.++.|......++..+.+++.++ +..|-..|+..+.
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~ 199 (876)
T 1qgr_A 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALL 199 (876)
T ss_dssp HHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHH
T ss_pred HHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Confidence 8877777788888889999999999987 6777777766543
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=79.47 E-value=83 Score=34.99 Aligned_cols=246 Identities=11% Similarity=0.131 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCccccCCCCchhHHHHHHH
Q 015533 96 KEIKHRNLQELVKFIQSDSSKINEQMQENLMRMISINIFRALPPAFHENTGSLPDVGEPDEEDAWLEPAWPHLQLVYEIL 175 (405)
Q Consensus 96 Ke~Kr~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NIFR~lPp~~~~~~~~~~~~~d~eedep~~e~sWpHLqlVYeil 175 (405)
++++++++.+|.+.+......+++.....++..+- +.+. ++.|..-+.....+
T Consensus 20 ~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll----~~L~-----------------------d~~~~vR~~A~~~L 72 (1230)
T 1u6g_C 20 KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMIL----KLLE-----------------------DKNGEVQNLAVKCL 72 (1230)
T ss_dssp HHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHH----HHTT-----------------------CSSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHH----HHhc-----------------------CCCHHHHHHHHHHH
Confidence 57889999999998877655566555555554432 2221 24566666666666
Q ss_pred HHHHhhcCCChHHHhhcCCHHHHHHHhhccCCCChhHHHHHHHHHHHHhhccccc------hHHHHHHHHHHHHHhhhcc
Q 015533 176 LRYIVSNGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSH------RPFIRAGINNVFYRFIFET 249 (405)
Q Consensus 176 lrfv~s~~~d~k~ak~~id~~Fi~~Ll~lfdS~DpRERd~LktiLhrIY~Kf~~~------R~fIRk~i~nif~~fi~e~ 249 (405)
..++.. ..+ .++ ...+..|+..+.+++++-|...-..|..|....... ..-....+-..+.+.+.+.
T Consensus 73 ~~l~~~--~~~----~~~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~ 145 (1230)
T 1u6g_C 73 GPLVSK--VKE----YQV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ 145 (1230)
T ss_dssp HHHHTT--SCH----HHH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHh--CCH----HHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC
Confidence 666542 122 222 346677888888899988988777887777655432 1111223333444444322
Q ss_pred cCccCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhhcCCCCCchhhchhHHHHHHHHHHHhCc-----ccHHHHHHHHh
Q 015533 250 ERHNGIGELLEILGSIINGFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKDY-----ELADTVIRGLL 324 (405)
Q Consensus 250 ~~~nGIaELLeilgSIInGFa~PLKeEhk~fl~~vLiPLHk~~~l~~y~~qL~yci~qF~eKDp-----~L~~~vi~~LL 324 (405)
+...-....+++++.+...+...+.+ +..-+...|+++...+.. .....-..|+..+++.-+ .+...++.+|.
T Consensus 146 ~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~-~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~ 223 (1230)
T 1u6g_C 146 EDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRL-AVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELS 223 (1230)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSH-HHHHHHHHHHHHHTTTC----CTTHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 33333457888888888644333333 223344556666665443 344555667777765433 24555555555
Q ss_pred hh-CCCCCchhHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhhCCCchHHHHHHHh
Q 015533 325 RY-WPVTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSPHFQVHIIVTS 382 (405)
Q Consensus 325 k~-WP~tns~KEvlFL~EleeiLe~~~~~~f~~i~~plF~~la~ci~S~hfqVAErAl~ 382 (405)
+- |+. .-.+=+.. +..+.+..+. .|...+..++..+-+++..++-.|-+.|+.
T Consensus 224 ~~~~~~-~r~~a~~~---l~~l~~~~~~-~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~ 277 (1230)
T 1u6g_C 224 KNDSMS-TTRTYIQC---IAAISRQAGH-RIGEYLEKIIPLVVKFCNVDDDELREYCIQ 277 (1230)
T ss_dssp HTCSSC-SCTTHHHH---HHHHHHHSSG-GGTTSCTTHHHHHHHHHSSCCTTTHHHHHH
T ss_pred cCCchh-HHHHHHHH---HHHHHHHhHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 43 321 11222333 4444444433 555555556666666666666655444443
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=77.35 E-value=73 Score=33.18 Aligned_cols=186 Identities=10% Similarity=0.081 Sum_probs=97.8
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHHhhcccc-chHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHhccC-----
Q 015533 197 FVLKLLDLFDTEDHREREYLKMVLHRIYGRFMS-HRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFA----- 270 (405)
Q Consensus 197 Fi~~Ll~lfdS~DpRERd~LktiLhrIY~Kf~~-~R~fIRk~i~nif~~fi~e~~~~nGIaELLeilgSIInGFa----- 270 (405)
++..|...+.++|++.|...-.+|.++...+.. .++++.+.+-..+...+.+. ...-....+++++++.....
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~ 303 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYE 303 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 455556677899999999888888888776654 34555533333444443221 11223466777777654310
Q ss_pred ------CC-----cHHHHHHHHHHHhhcCCCCCc------hhhchhHHHHHHHHHHHhCc-ccHHHHHHHHhhhCCCCCc
Q 015533 271 ------LP-----MKEEHKLLLVRAMLPLHKPKC------VALYHQQLTYCVVQFVEKDY-ELADTVIRGLLRYWPVTNC 332 (405)
Q Consensus 271 ------~P-----LKeEhk~fl~~vLiPLHk~~~------l~~y~~qL~yci~qF~eKDp-~L~~~vi~~LLk~WP~tns 332 (405)
.| .-..+...+..+++...+... -......-..|+..+...-+ .....++..+...--..+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 383 (861)
T 2bpt_A 304 LAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNW 383 (861)
T ss_dssp HHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSH
T ss_pred hhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCCh
Confidence 00 001111222333443333210 00111122233333332221 2344444444433212222
Q ss_pred hhHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhhCCCchHHHHHHHhh
Q 015533 333 QKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSPHFQVHIIVTSL 383 (405)
Q Consensus 333 ~KEvlFL~EleeiLe~~~~~~f~~i~~plF~~la~ci~S~hfqVAErAl~i 383 (405)
.....-+.-+..+.+.+.++.+...+..+...+.+++.++|..|-++|+..
T Consensus 384 ~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~ 434 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWC 434 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 222233445666777777777888888899999999999999998888653
No 12
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=76.93 E-value=6.7 Score=32.83 Aligned_cols=84 Identities=11% Similarity=0.117 Sum_probs=66.3
Q ss_pred HHHHHHhCcccHHHHHHHHhhhCCCCCchhHHHHHHHHHHHhhcCC------hhHHHHHHHHHHHHHHHhhCCCchHHHH
Q 015533 305 VVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTH------PAEFQQCMGPLFRQIGRCLTSPHFQVHI 378 (405)
Q Consensus 305 i~qF~eKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~------~~~f~~i~~plF~~la~ci~S~hfqVAE 378 (405)
+.+|+-.+.+-+..+++.+.++=-.+.+.+-+-+|.-+.+|+-.+- -..|++.++++|..+.+.....+-+...
T Consensus 26 ~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~ 105 (135)
T 4fu3_A 26 LSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLE 105 (135)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556555666677777777777767777888999999999996552 2458899999999999888888888999
Q ss_pred HHHhhhcccc
Q 015533 379 IVTSLIYMSC 388 (405)
Q Consensus 379 rAl~i~~n~~ 388 (405)
|-+.+|..-.
T Consensus 106 kll~iW~~r~ 115 (135)
T 4fu3_A 106 RLLNIWQERS 115 (135)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHhcCCC
Confidence 9999998643
No 13
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=73.90 E-value=56 Score=34.03 Aligned_cols=112 Identities=8% Similarity=-0.005 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCchhhchhHHHHHHHHHHHhC-cc-cHHHHHHHHhhhCCCC-CchhHHHHHHHHHHHhhcC
Q 015533 273 MKEEHKLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKD-YE-LADTVIRGLLRYWPVT-NCQKEVLFLGELEEVLDVT 349 (405)
Q Consensus 273 LKeEhk~fl~~vLiPLHk~~~l~~y~~qL~yci~qF~eKD-p~-L~~~vi~~LLk~WP~t-ns~KEvlFL~EleeiLe~~ 349 (405)
+.++.+..+...|+.......-.. ..++..++......| |. --..++..|+..---. +..--..-+.-+..+.+..
T Consensus 88 l~~~~~~~ik~~ll~~l~~~~~~v-r~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~ 166 (861)
T 2bpt_A 88 VSPEAKNQIKTNALTALVSIEPRI-ANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESA 166 (861)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSHHH-HHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHCCCchHH-HHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 445666666666776666554333 677888887766554 21 1122333333322111 2222223345666666655
Q ss_pred ChhH--HHHHHHHHHHHHHHhhCCC--chHHHHHHHhhhc
Q 015533 350 HPAE--FQQCMGPLFRQIGRCLTSP--HFQVHIIVTSLIY 385 (405)
Q Consensus 350 ~~~~--f~~i~~plF~~la~ci~S~--hfqVAErAl~i~~ 385 (405)
.++. +......++..+..++.++ +..|-..|+..+.
T Consensus 167 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~ 206 (861)
T 2bpt_A 167 DPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALA 206 (861)
T ss_dssp STTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Confidence 5442 5667778888888899887 7888777776654
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=73.55 E-value=31 Score=36.78 Aligned_cols=179 Identities=8% Similarity=0.040 Sum_probs=92.8
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhcccCccCHHH-HHHHHHHHHhccCCCcHHH
Q 015533 198 VLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRAGINNVFYRFIFETERHNGIGE-LLEILGSIINGFALPMKEE 276 (405)
Q Consensus 198 i~~Ll~lfdS~DpRERd~LktiLhrIY~Kf~~~R~fIRk~i~nif~~fi~e~~~~nGIaE-LLeilgSIInGFa~PLKeE 276 (405)
+.+++....|+|+..|......|..++. ...|. .....++... +.....+-. ..-.|...|+..-..+.++
T Consensus 15 l~~~l~~~~s~d~~~r~~Ae~~L~~~~~----~p~~~-~~l~~il~~~---~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~ 86 (852)
T 4fdd_A 15 ILQLLKESQSPDTTIQRTVQQKLEQLNQ----YPDFN-NYLIFVLTKL---KSEDEPTRSLSGLILKNNVKAHFQNFPNG 86 (852)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTT----SHHHH-HHHHHHHHTC---TTSCHHHHHHHHHHHHHHTTTSGGGCCHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHh----CCCHH-HHHHHHHhcc---CCCChHHHHHHHHHHHHHHHHccCCCCHH
Confidence 4455555567888888888887766543 11111 1111111110 010111100 0001223333222357788
Q ss_pred HHHHHHHHhhcCCCCCchhhchhHHHHHHHHHHHhCcc-cHHHHHHHHhhhCCCCCchhHHHHHHHHHHHhhcCChh---
Q 015533 277 HKLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKDYE-LADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPA--- 352 (405)
Q Consensus 277 hk~fl~~vLiPLHk~~~l~~y~~qL~yci~qF~eKDp~-L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~--- 352 (405)
.+..+...|+++...+. ..-..+++.|+......|+. --..++..|+..+-..+..-.-.-+.-+..+.+..++.
T Consensus 87 ~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~ 165 (852)
T 4fdd_A 87 VTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDS 165 (852)
T ss_dssp HHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhch
Confidence 99999999999877544 35567889999988777621 11122333333332233222223344455555544332
Q ss_pred -HHHHHHHHHHHHHHHhhCCCchHHHHHHHhhhc
Q 015533 353 -EFQQCMGPLFRQIGRCLTSPHFQVHIIVTSLIY 385 (405)
Q Consensus 353 -~f~~i~~plF~~la~ci~S~hfqVAErAl~i~~ 385 (405)
........++..+-+++++++..|-..|+...+
T Consensus 166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~ 199 (852)
T 4fdd_A 166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVN 199 (852)
T ss_dssp CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 111224456666777889999999888877664
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=72.18 E-value=42 Score=31.91 Aligned_cols=195 Identities=11% Similarity=0.054 Sum_probs=95.3
Q ss_pred hHHHhhcCCHHHHHHHhhccCCCChhHHHHHHHHHHHHhhccccchHHHH-HHHHHHHHHhhhcccCccCHHHHHHHHHH
Q 015533 186 KKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIR-AGINNVFYRFIFETERHNGIGELLEILGS 264 (405)
Q Consensus 186 ~k~ak~~id~~Fi~~Ll~lfdS~DpRERd~LktiLhrIY~Kf~~~R~fIR-k~i~nif~~fi~e~~~~nGIaELLeilgS 264 (405)
+...+..++...+..|+.++.++|+.-|...-..|..+-......|..+. ..+-..+.+++.......-....++.++.
T Consensus 97 ~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 97 SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 33444555566889999999999999999999998887765544444332 23334556665432222223456777777
Q ss_pred HHhccCCCcHHHHHHHHHHHhhcCCCCCchhhchhHHHHHHHHHHHhC---------cccHHHHHHHHhhhCCCCCchhH
Q 015533 265 IINGFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKD---------YELADTVIRGLLRYWPVTNCQKE 335 (405)
Q Consensus 265 IInGFa~PLKeEhk~fl~~vLiPLHk~~~l~~y~~qL~yci~qF~eKD---------p~L~~~vi~~LLk~WP~tns~KE 335 (405)
+..+-....+.....-....|+.+.+...-.. ......++......+ ......+++.| + ..+..-.
T Consensus 177 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~---~~~~~v~ 251 (450)
T 2jdq_A 177 LCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDV-LADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-M---HNDYKVV 251 (450)
T ss_dssp HHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHH-HHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-T---CSCHHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-C---CCchhHH
Confidence 77553111111111112333444444332111 111222333222221 22333444333 2 1221111
Q ss_pred HHHHHHHHHHhhcCChhHHHHHH-HHHHHHHHHhhCCCchHHHHHHHhhhcc
Q 015533 336 VLFLGELEEVLDVTHPAEFQQCM-GPLFRQIGRCLTSPHFQVHIIVTSLIYM 386 (405)
Q Consensus 336 vlFL~EleeiLe~~~~~~f~~i~-~plF~~la~ci~S~hfqVAErAl~i~~n 386 (405)
..-+.-|..+... .+..-+.+. ..+...|.+++.+++..|-+.|+....|
T Consensus 252 ~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~ 302 (450)
T 2jdq_A 252 SPALRAVGNIVTG-DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302 (450)
T ss_dssp HHHHHHHHHHTTS-CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1222223323221 111111111 1366677788888888888888776654
No 16
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=71.25 E-value=81 Score=33.85 Aligned_cols=152 Identities=12% Similarity=0.090 Sum_probs=80.1
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHhhcccc-chHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHhccCCCcHHHH
Q 015533 199 LKLLDLFDTEDHREREYLKMVLHRIYGRFMS-HRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKEEH 277 (405)
Q Consensus 199 ~~Ll~lfdS~DpRERd~LktiLhrIY~Kf~~-~R~fIRk~i~nif~~fi~e~~~~nGIaELLeilgSIInGFa~PLKeEh 277 (405)
.++++.+. .|++.++.+..+++++-..+.. ..+++-..+..++..|- . .+++.+|.+++.+++.|...
T Consensus 689 ~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~--~---~~~~~~l~l~~~li~~f~~~----- 757 (963)
T 2x19_B 689 QKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYS--T---IPQASALDLTRQLVHIFAHE----- 757 (963)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHH--H---SCCHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHhcc-CchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHH--c---CCccHHHHHHHHHHHHhCCC-----
Confidence 34444432 4566777777777774432221 23555444443333332 1 24678999999999855431
Q ss_pred HHHHHHHhhcCCCCCchhhchhHHHHHHHHHHHhCcccHHHHHHHHhhhCCCCCchhHHHHHHHHHHHhhcCChhHH-HH
Q 015533 278 KLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPAEF-QQ 356 (405)
Q Consensus 278 k~fl~~vLiPLHk~~~l~~y~~qL~yci~qF~eKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~~f-~~ 356 (405)
+.+ .+.+..+.+.+..|+...+.+|+.- .+.=..-|++-+..++..++..-+ ..
T Consensus 758 ---------~~~-~~~~~~~l~~~~~~~l~~~~~~~~~---------------~pd~~~~~f~ll~~~~~~~~~~~~~~~ 812 (963)
T 2x19_B 758 ---------PAH-FPPIEALFLLVTSVTLTLFQQGPRD---------------HPDIVDSFMQLLAQALKRKPDLFLCER 812 (963)
T ss_dssp ---------TTT-CHHHHHHHHHHHHHHHHHHHHCTTT---------------CHHHHHHHHHHHHHHHHHCGGGGGCTT
T ss_pred ---------cch-HHHHHHHHHHHHHHHHHHHhhCccc---------------CchHHHHHHHHHHHHHHhCcHHHcCCc
Confidence 000 1122334455566666555543221 001112334444444443333222 12
Q ss_pred H-HHHHHHHHHHhhCCCchHHHHHHHhhhcc
Q 015533 357 C-MGPLFRQIGRCLTSPHFQVHIIVTSLIYM 386 (405)
Q Consensus 357 i-~~plF~~la~ci~S~hfqVAErAl~i~~n 386 (405)
. ...++..+..++..++.-|+..|+.+|.+
T Consensus 813 ~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~ 843 (963)
T 2x19_B 813 LDVKAVFQCAVLALKFPEAPTVKASCGFFTE 843 (963)
T ss_dssp SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 2 45577778888888999999999988864
No 17
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=69.38 E-value=55 Score=28.18 Aligned_cols=190 Identities=16% Similarity=0.096 Sum_probs=98.6
Q ss_pred hHHHhhcCCHHHHHHHhhccCCCChhHHHHHHHHHHHHhhccccchHHHH-HHHHHHHHHhhhcccCccCHHHHHHHHHH
Q 015533 186 KKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIR-AGINNVFYRFIFETERHNGIGELLEILGS 264 (405)
Q Consensus 186 ~k~ak~~id~~Fi~~Ll~lfdS~DpRERd~LktiLhrIY~Kf~~~R~fIR-k~i~nif~~fi~e~~~~nGIaELLeilgS 264 (405)
+...+..++...+..|+.++.++|+.-|...-..|..+-..-...|..+. ...-..+.+.+... ...-....+.+++.
T Consensus 34 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~ 112 (252)
T 4hxt_A 34 ASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALAN 112 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 34555666667899999999999999999988888777665344443332 22345556665432 22223355666666
Q ss_pred HHhccCCCcHHHHHHH-----HHHHhhcCCCCCchhhchhHHHHHHHHHHHhCccc--------HHHHHHHHhhhCCCCC
Q 015533 265 IINGFALPMKEEHKLL-----LVRAMLPLHKPKCVALYHQQLTYCVVQFVEKDYEL--------ADTVIRGLLRYWPVTN 331 (405)
Q Consensus 265 IInGFa~PLKeEhk~f-----l~~vLiPLHk~~~l~~y~~qL~yci~qF~eKDp~L--------~~~vi~~LLk~WP~tn 331 (405)
+..+ .++.+.. ....|+.+.+...-. -...-..++......++.. +-+.+-.+++ ..+
T Consensus 113 l~~~-----~~~~~~~~~~~~~i~~L~~~l~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~ 183 (252)
T 4hxt_A 113 IASG-----PDEAIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---STD 183 (252)
T ss_dssp HTTS-----CHHHHHHHHHTTHHHHHHHHTTCSCHH-HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSC
T ss_pred HHcC-----CHHHHHHHHHCCCHHHHHHHHcCCCHH-HHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC---CCC
Confidence 6532 1233322 234566666655422 2333444544444433332 1222223333 122
Q ss_pred chhHHHHHHHHHHHhhcCChhHHHHHH-HHHHHHHHHhhCCCchHHHHHHHhhhcc
Q 015533 332 CQKEVLFLGELEEVLDVTHPAEFQQCM-GPLFRQIGRCLTSPHFQVHIIVTSLIYM 386 (405)
Q Consensus 332 s~KEvlFL~EleeiLe~~~~~~f~~i~-~plF~~la~ci~S~hfqVAErAl~i~~n 386 (405)
..=...=+.-|..+.. .+++.-+.+. ..+...|.+.+.+.+..|.+.|+....|
T Consensus 184 ~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 184 SEVQKEAARALANIAS-GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHHHHHHTT-SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 1111111122222221 1222222221 2356778888889999999999877655
No 18
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=68.48 E-value=55 Score=33.61 Aligned_cols=175 Identities=10% Similarity=0.033 Sum_probs=107.1
Q ss_pred HHHHHHhhccCCCChhHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHhccCCCcHH
Q 015533 196 TFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKE 275 (405)
Q Consensus 196 ~Fi~~Ll~lfdS~DpRERd~LktiLhrIY~Kf~~~R~fIRk~i~nif~~fi~e~~~~nGIaELLeilgSIInGFa~PLKe 275 (405)
..+..|.+.+.+.|..-|..+-.-++++-.+|...-.|+- +.+.+++... .-.-..|.+..++.|+.++. -+++
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v----~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p-~~~~ 426 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCV----STLLDLIQTK-VNYVVQEAIVVIRDIFRKYP-NKYE 426 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHTC-CHHHHHHHHHHHHHHHHHSC-SSCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHH----HHHHHHHccc-chHHHHHHHHHHHHHHHHCc-chHH
Confidence 4667788888888998888888888888888764333333 4555655332 11224577778888887753 2222
Q ss_pred HHHHHHHHHhhcCCCCCchhhchhHHHHHHHHHHHhCcccHHHHHHHHhhhCCCCCchhHHHHHHHHHHHhhcCChhHHH
Q 015533 276 EHKLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPAEFQ 355 (405)
Q Consensus 276 Ehk~fl~~vLiPLHk~~~l~~y~~qL~yci~qF~eKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~~f~ 355 (405)
.-...|...+ ..-....-.....+++-+|.+.-+. ...+++.+++.+...++.=+...|.-+..+....+.. -+
T Consensus 427 ~~v~~L~~~l----~~~~~~~~~~~~~wilGey~~~~~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~ 500 (591)
T 2vgl_B 427 SIIATLCENL----DSLDEPDARAAMIWIVGEYAERIDN-ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQ 500 (591)
T ss_dssp TTHHHHHHTT----TTCCSHHHHHHHHHHHHTTCTTCTT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-TH
T ss_pred HHHHHHHHHH----HhccCHHHHHHHHHHHHcccccccC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HH
Confidence 2222222222 1111112245566777777655433 6789999998888766655666777777777665432 22
Q ss_pred HHHHHHHHHHHHhh-CCCchHHHHHHHhhhc
Q 015533 356 QCMGPLFRQIGRCL-TSPHFQVHIIVTSLIY 385 (405)
Q Consensus 356 ~i~~plF~~la~ci-~S~hfqVAErAl~i~~ 385 (405)
..+..+ +..|. +|.+..|=+||..+|.
T Consensus 501 ~~i~~l---l~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 501 ELVQQV---LSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHHHH---HHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHH---HHHhhhcCCChHHHHHHHHHHH
Confidence 333333 44554 5789999999987764
No 19
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=63.01 E-value=1.6e+02 Score=31.20 Aligned_cols=189 Identities=12% Similarity=0.129 Sum_probs=99.3
Q ss_pred hhcCCHHHHHHHhhccCCCChhHHHHHHHHHHHHhh---ccccchHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHH
Q 015533 190 KRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYG---RFMSHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSII 266 (405)
Q Consensus 190 k~~id~~Fi~~Ll~lfdS~DpRERd~LktiLhrIY~---Kf~~~R~fIRk~i~nif~~fi~e~~~~nGIaELLeilgSII 266 (405)
.+|+ ...+..|+..++..+.+....+-+.+..|.. .-.....++...+..++..+-.-.+....+..+++.+++|.
T Consensus 478 ~~~l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~ 556 (852)
T 4fdd_A 478 VPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVA 556 (852)
T ss_dssp GGGH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHH
T ss_pred HhHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 3454 4677788888887777776666666655543 22223346655554443322111122233446788888887
Q ss_pred hccCCCcHHHHHHHHHH---Hhh------------c-CCCCCchhhch----hHHHHHHHHHHHhCcc-cH--HHHHHHH
Q 015533 267 NGFALPMKEEHKLLLVR---AML------------P-LHKPKCVALYH----QQLTYCVVQFVEKDYE-LA--DTVIRGL 323 (405)
Q Consensus 267 nGFa~PLKeEhk~fl~~---vLi------------P-LHk~~~l~~y~----~qL~yci~qF~eKDp~-L~--~~vi~~L 323 (405)
......+.+.-...+.+ .+- | -...+.. .+. ..+..+ .+-+..+-. +. ..++..+
T Consensus 557 ~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~-~~~~~~l~~l~~l-~~~l~~~~~~~~~~~~~~~~l 634 (852)
T 4fdd_A 557 TALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDK-DFMIVALDLLSGL-AEGLGGNIEQLVARSNILTLM 634 (852)
T ss_dssp HHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCT-HHHHHHHHHHHHH-HHHHGGGGHHHHHTCCHHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcc-hHHHHHHHHHHHH-HHHHhHhHHHHhcCCcHHHHH
Confidence 75433322211111111 111 1 1111111 111 222222 233332211 10 2456777
Q ss_pred hhhCCCCCchhHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhhCCCchHHHHHHHh
Q 015533 324 LRYWPVTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSPHFQVHIIVTS 382 (405)
Q Consensus 324 Lk~WP~tns~KEvlFL~EleeiLe~~~~~~f~~i~~plF~~la~ci~S~hfqVAErAl~ 382 (405)
+..|.-.++.=......-+.++...++ ++|.+.+..+...+.+.++...+.|...|+.
T Consensus 635 ~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~ 692 (852)
T 4fdd_A 635 YQCMQDKMPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNATW 692 (852)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHHHH
T ss_pred HHHhCCCChhHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHcCccchHHHHHHHH
Confidence 777755444444456677777777776 5788888889999999998888887655543
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=60.86 E-value=72 Score=31.70 Aligned_cols=194 Identities=11% Similarity=0.056 Sum_probs=98.2
Q ss_pred hHHHhhcCCHHHHHHHhhccCCCChhHHHHHHHHHHHHhhccccchHHHH-HHHHHHHHHhhhcccCccCHHHHHHHHHH
Q 015533 186 KKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIR-AGINNVFYRFIFETERHNGIGELLEILGS 264 (405)
Q Consensus 186 ~k~ak~~id~~Fi~~Ll~lfdS~DpRERd~LktiLhrIY~Kf~~~R~fIR-k~i~nif~~fi~e~~~~nGIaELLeilgS 264 (405)
+...+..++...+..|+.++.++|+.-|...-..|..|-+.-...|..+. ..+-..+.+.+.. ....-....++.++.
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHH
Confidence 33333444445677888888899999999999998888765444444432 2233445555543 111223456777777
Q ss_pred HHhccCCCcHHHHHHHHHHHhhcCCCCCchhhchhHHHHHHHHHHHhCc---------ccHHHHHHHHhhhCCCCCchhH
Q 015533 265 IINGFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKDY---------ELADTVIRGLLRYWPVTNCQKE 335 (405)
Q Consensus 265 IInGFa~PLKeEhk~fl~~vLiPLHk~~~l~~y~~qL~yci~qF~eKDp---------~L~~~vi~~LLk~WP~tns~KE 335 (405)
+..+-..........-....|+.|.....-. -......++......++ .+...++. ++++ .+..-.
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~-v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~-lL~~---~~~~v~ 316 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTE-TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE-LLSH---ESTLVQ 316 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHH-HHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH-GGGC---SCHHHH
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHHHcCCCHH-HHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHH-HHCC---CChhhH
Confidence 7766422233333333455666666654422 11222344443333332 23333333 2321 121111
Q ss_pred HHHHHHHHHHhhcCChhHHHHHH-HHHHHHHHHhhCCCchHHHHHHHhhhcc
Q 015533 336 VLFLGELEEVLDVTHPAEFQQCM-GPLFRQIGRCLTSPHFQVHIIVTSLIYM 386 (405)
Q Consensus 336 vlFL~EleeiLe~~~~~~f~~i~-~plF~~la~ci~S~hfqVAErAl~i~~n 386 (405)
..-+.-|..+... .+...+.+. ..+...|..++.+++..|-+.|+..+.|
T Consensus 317 ~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 317 TPALRAVGNIVTG-NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp HHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1112222222211 122222222 2456677788889999998888776655
No 21
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=59.25 E-value=1.8e+02 Score=32.21 Aligned_cols=179 Identities=10% Similarity=0.071 Sum_probs=85.2
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHHhhhcccCccCH-HHHHHHHHHHHhccCCCcH
Q 015533 197 FVLKLLDLFDTEDHREREYLKMVLHRIYGR-FMSHRPFIRAGINNVFYRFIFETERHNGI-GELLEILGSIINGFALPMK 274 (405)
Q Consensus 197 Fi~~Ll~lfdS~DpRERd~LktiLhrIY~K-f~~~R~fIRk~i~nif~~fi~e~~~~nGI-aELLeilgSIInGFa~PLK 274 (405)
-+.+|++.+.|+|+..|.....-|...+.+ .....+-..+.+-..+.+.+.. ....+ ..-...++.+..+..
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~~~---- 80 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED--KNGEVQNLAVKCLGPLVSKVK---- 80 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhCC----
Confidence 357888889999999998765555444432 2222211222222333444422 11112 123445666666542
Q ss_pred HHHHHHHHHHhhcCCCCCchhhchhHHHHHHHHHHHhCcc----------cHHHHHHHHhhhCC-CCCchhHHHHHHHHH
Q 015533 275 EEHKLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKDYE----------LADTVIRGLLRYWP-VTNCQKEVLFLGELE 343 (405)
Q Consensus 275 eEhk~fl~~vLiPLHk~~~l~~y~~qL~yci~qF~eKDp~----------L~~~vi~~LLk~WP-~tns~KEvlFL~Ele 343 (405)
+++...+...|+.....+.-.. ...-..|+.++.+.-+. ....++..|++.== ..+.....-=+.-+.
T Consensus 81 ~~~~~~i~~~Ll~~l~d~~~~v-R~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 81 EYQVETIVDTLCTNMLSDKEQL-RDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HHHHHHHHHHHHHHTTCSSSHH-HHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHH-HHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 2444445555555443333222 22234555555433221 12233333322111 112222222333444
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHHhhCCCchHHHHHHHhh
Q 015533 344 EVLDVTHPAEFQQCMGPLFRQIGRCLTSPHFQVHIIVTSL 383 (405)
Q Consensus 344 eiLe~~~~~~f~~i~~plF~~la~ci~S~hfqVAErAl~i 383 (405)
++++..+. .+......+...+..++.+++..|-++|+.-
T Consensus 160 ~~~~~~~~-~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~a 198 (1230)
T 1u6g_C 160 DMLSRQGG-LLVNFHPSILTCLLPQLTSPRLAVRKRTIIA 198 (1230)
T ss_dssp HHHHHTCS-SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHH
T ss_pred HHHHHhHh-HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 44433222 2334556677778888888888888887653
No 22
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=54.79 E-value=1.4e+02 Score=28.09 Aligned_cols=48 Identities=8% Similarity=0.099 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhhCCCchHHHHHHHhhh
Q 015533 337 LFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSPHFQVHIIVTSLI 384 (405)
Q Consensus 337 lFL~EleeiLe~~~~~~f~~i~~plF~~la~ci~S~hfqVAErAl~i~ 384 (405)
.-+.-|..+.+.+.++.+...+..++..+.++++++|..|-.+|+...
T Consensus 385 aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l 432 (462)
T 1ibr_B 385 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTV 432 (462)
T ss_dssp HHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 334455566666655555556667888899999999999988876544
No 23
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=53.09 E-value=35 Score=29.26 Aligned_cols=89 Identities=8% Similarity=0.054 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHhCcccHHHHHHHHhhhCCCCCchhHHHHHHHHHHHhhcCCh---hHHHHHHHHHHHHHHHhhCCCchH
Q 015533 299 QQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHP---AEFQQCMGPLFRQIGRCLTSPHFQ 375 (405)
Q Consensus 299 ~qL~yci~qF~eKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~---~~f~~i~~plF~~la~ci~S~hfq 375 (405)
++...-++.+...+..-+..+++.+.+|=-++++.+-+.+|.-+.+|+-.+.. ..|.+.+.++|...-+++....-+
T Consensus 24 k~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~ 103 (144)
T 1sz9_A 24 RPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRT 103 (144)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 44455567787778888888888888888889999999999999999987753 468888899999988887766667
Q ss_pred HHHHHHhhhccc
Q 015533 376 VHIIVTSLIYMS 387 (405)
Q Consensus 376 VAErAl~i~~n~ 387 (405)
--.|-+.+|..-
T Consensus 104 k~~rL~~~W~~~ 115 (144)
T 1sz9_A 104 KLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHTSG
T ss_pred HHHHHHHHHhCc
Confidence 778888999743
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=44.43 E-value=2.4e+02 Score=27.68 Aligned_cols=107 Identities=19% Similarity=0.137 Sum_probs=63.2
Q ss_pred hHHHhhcCCHHHHHHHhhccCCCChhHHHHHHHHHHHHhhccccchHHHHH-HHHHHHHHhhhcccCccCHHHHHHHHHH
Q 015533 186 KKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRA-GINNVFYRFIFETERHNGIGELLEILGS 264 (405)
Q Consensus 186 ~k~ak~~id~~Fi~~Ll~lfdS~DpRERd~LktiLhrIY~Kf~~~R~fIRk-~i~nif~~fi~e~~~~nGIaELLeilgS 264 (405)
+...+..++...+..|+.++.++++.-|...-..|..|-+.-...|..+.. .+-..+.+.+.......-.....++++.
T Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 150 SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 444445555567888999999999999999999998887654444544433 1223445555333233334566777777
Q ss_pred HHhccCCCcHHHHHHHHHHHhhcCCCCCc
Q 015533 265 IINGFALPMKEEHKLLLVRAMLPLHKPKC 293 (405)
Q Consensus 265 IInGFa~PLKeEhk~fl~~vLiPLHk~~~ 293 (405)
+..+...+-. ....-....|+.|.....
T Consensus 230 L~~~~~~~~~-~~~~~~l~~L~~lL~~~~ 257 (528)
T 4b8j_A 230 FCRGKPQPSF-EQTRPALPALARLIHSND 257 (528)
T ss_dssp HHCSSSCCCH-HHHTTHHHHHHHHTTCCC
T ss_pred HHcCCCCCcH-HHHHHHHHHHHHHHCCCC
Confidence 7766522222 222233455666655543
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=42.77 E-value=1.1e+02 Score=29.03 Aligned_cols=23 Identities=9% Similarity=-0.029 Sum_probs=4.0
Q ss_pred cccCCCCchhHHHHHHHHHHHhh
Q 015533 159 AWLEPAWPHLQLVYEILLRYIVS 181 (405)
Q Consensus 159 p~~e~sWpHLqlVYeillrfv~s 181 (405)
...+..|+=..+....|...+.+
T Consensus 9 ~~~~~~w~~~~~~l~~l~~~l~s 31 (450)
T 2jdq_A 9 QINNMEMAPGGVITSDMIEMIFS 31 (450)
T ss_dssp -------------CHHHHHHHHS
T ss_pred hhhHHhhccccccHHHHHHHhcC
Confidence 34556776444333444444433
No 26
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=41.30 E-value=1.7e+02 Score=25.19 Aligned_cols=186 Identities=12% Similarity=0.077 Sum_probs=96.4
Q ss_pred HhhcCCHHHHHHHhhccCCCChhHHHHHHHHHHHHhhccccchHHHHH-HHHHHHHHhhhcccCccCHHHHHHHHHHHHh
Q 015533 189 AKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRA-GINNVFYRFIFETERHNGIGELLEILGSIIN 267 (405)
Q Consensus 189 ak~~id~~Fi~~Ll~lfdS~DpRERd~LktiLhrIY~Kf~~~R~fIRk-~i~nif~~fi~e~~~~nGIaELLeilgSIIn 267 (405)
.+..++...+..|+.++.++|+.-|...-.+|..+-......|..+.+ ..-..+.+.+.. +...-....+.+++.+..
T Consensus 47 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~ 125 (252)
T 4db8_A 47 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIAS 125 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhc
Confidence 344556678889999999999999988888887776544444443333 234556666543 222223456667777654
Q ss_pred ccCCCcHHHH-HHH----HHHHhhcCCCCCchhhchhHHHHHHHHHHHhCc---------ccHHHHHHHHhhhCCCCCch
Q 015533 268 GFALPMKEEH-KLL----LVRAMLPLHKPKCVALYHQQLTYCVVQFVEKDY---------ELADTVIRGLLRYWPVTNCQ 333 (405)
Q Consensus 268 GFa~PLKeEh-k~f----l~~vLiPLHk~~~l~~y~~qL~yci~qF~eKDp---------~L~~~vi~~LLk~WP~tns~ 333 (405)
+. +.. ..+ ....|+.+.+..... -...-..++......++ .....+++ +++. .+..
T Consensus 126 ~~-----~~~~~~~~~~~~i~~L~~lL~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~---~~~~ 195 (252)
T 4db8_A 126 GG-----NEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQAVIDAGALPALVQ-LLSS---PNEQ 195 (252)
T ss_dssp SC-----HHHHHHHHHTTHHHHHHHGGGCSCHH-HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH-GGGC---SSHH
T ss_pred CC-----chHHHHHHHCCCHHHHHHHHhCCCHH-HHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHH-HHCC---CCHH
Confidence 42 111 111 234566666554322 12223344444443332 22333332 3331 1211
Q ss_pred hHHHHHHHHHHHhhcCChhHHHHHHH-HHHHHHHHhhCCCchHHHHHHHhhhcc
Q 015533 334 KEVLFLGELEEVLDVTHPAEFQQCMG-PLFRQIGRCLTSPHFQVHIIVTSLIYM 386 (405)
Q Consensus 334 KEvlFL~EleeiLe~~~~~~f~~i~~-plF~~la~ci~S~hfqVAErAl~i~~n 386 (405)
=...-+.-|..+.. -+++..+.+.. -....|.+.+.+.+.+|.+.|+....|
T Consensus 196 v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 196 ILQEALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 11111222222221 13333333332 266778888889999999988776654
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=41.20 E-value=2.4e+02 Score=27.69 Aligned_cols=182 Identities=13% Similarity=0.065 Sum_probs=87.5
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHhhccc--cchHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHhccCCCcHH
Q 015533 198 VLKLLDLFDTEDHREREYLKMVLHRIYGRFM--SHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKE 275 (405)
Q Consensus 198 i~~Ll~lfdS~DpRERd~LktiLhrIY~Kf~--~~R~fIRk~i~nif~~fi~e~~~~nGIaELLeilgSIInGFa~PLKe 275 (405)
+..|+..+.|+|+..|...-..|.++..... ..+.++...+-..+.+++...+...--.+.+++|+.|..|- .
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-----~ 150 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-----S 150 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-----H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-----H
Confidence 4557777788888888877777777654432 23344444444556666643221111235677777776542 2
Q ss_pred HHHHHH-----HHHhhcCCCCCchhhchhHHHHHHHHHHHhCcccHHHH-----HHHHhhhC-CCCCchhHHHHHHHHHH
Q 015533 276 EHKLLL-----VRAMLPLHKPKCVALYHQQLTYCVVQFVEKDYELADTV-----IRGLLRYW-PVTNCQKEVLFLGELEE 344 (405)
Q Consensus 276 Ehk~fl-----~~vLiPLHk~~~l~~y~~qL~yci~qF~eKDp~L~~~v-----i~~LLk~W-P~tns~KEvlFL~Elee 344 (405)
+++..+ ...|+.|.+.+.. ....+-..++......++.....+ +..|++.= ..++..=...-+.-|..
T Consensus 151 ~~~~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKLLGSSSD-DVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHhcCCCH-HHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 343332 3456666665433 222333344444444333322211 22233222 11111111111122222
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHhhCCCchHHHHHHHhhhcc
Q 015533 345 VLDVTHPAEFQQCMGPLFRQIGRCLTSPHFQVHIIVTSLIYM 386 (405)
Q Consensus 345 iLe~~~~~~f~~i~~plF~~la~ci~S~hfqVAErAl~i~~n 386 (405)
+...-+...+ .....+...|.+.+.+.+-.|.+.|+..+.|
T Consensus 230 L~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~ 270 (528)
T 4b8j_A 230 FCRGKPQPSF-EQTRPALPALARLIHSNDEEVLTDACWALSY 270 (528)
T ss_dssp HHCSSSCCCH-HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHcCCCCCcH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3222111112 2335566677777888888888877766543
No 28
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=40.56 E-value=1e+02 Score=25.41 Aligned_cols=83 Identities=4% Similarity=0.066 Sum_probs=56.5
Q ss_pred HHHHHHhCcccHHHHHHHHhhhCCCCCchhHHHHHHHHHHHhhcCC---hhHHHHHHHHHHHHHHHhh-CCCchHHHHHH
Q 015533 305 VVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTH---PAEFQQCMGPLFRQIGRCL-TSPHFQVHIIV 380 (405)
Q Consensus 305 i~qF~eKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~---~~~f~~i~~plF~~la~ci-~S~hfqVAErA 380 (405)
+.+++-.+.+-+..+++.+.++=-.+.+.+-+-+|.-+.+|+..+. ...|.+...+.+..+-..+ +..+-+-..|-
T Consensus 27 ~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~~~~~~~~kl~~l 106 (132)
T 4flb_A 27 LSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSVERI 106 (132)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTTCSTTTHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3556556666677777777777777888899999999999997652 2344444444443333333 44566778899
Q ss_pred Hhhhccc
Q 015533 381 TSLIYMS 387 (405)
Q Consensus 381 l~i~~n~ 387 (405)
+.+|..-
T Consensus 107 l~iW~~r 113 (132)
T 4flb_A 107 FKIWEDR 113 (132)
T ss_dssp HHHHHHH
T ss_pred HHHhccC
Confidence 9999753
No 29
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=40.56 E-value=1.3e+02 Score=32.95 Aligned_cols=186 Identities=9% Similarity=0.103 Sum_probs=91.2
Q ss_pred HHHHHHhhccCCCChhHHHHHHHHHHHHhhcccc---chHHHHHHHHHHHH---Hhhhcc----------cCccCHHHHH
Q 015533 196 TFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMS---HRPFIRAGINNVFY---RFIFET----------ERHNGIGELL 259 (405)
Q Consensus 196 ~Fi~~Ll~lfdS~DpRERd~LktiLhrIY~Kf~~---~R~fIRk~i~nif~---~fi~e~----------~~~nGIaELL 259 (405)
.++.+|...++..+..++..+-..+-++...... .-+++.+.+.-+.. +.+.+. +....+..+|
T Consensus 589 ~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l 668 (1049)
T 3m1i_C 589 TIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANII 668 (1049)
T ss_dssp HHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHH
Confidence 4555666677778888888876666677665542 22333333222221 111110 1112334567
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHhhcCC-------------------CC---CchhhchhHHHHHHHHHHHhCcc---
Q 015533 260 EILGSIINGFALPMKEEHKLLLVRAMLPLH-------------------KP---KCVALYHQQLTYCVVQFVEKDYE--- 314 (405)
Q Consensus 260 eilgSIInGFa~PLKeEhk~fl~~vLiPLH-------------------k~---~~l~~y~~qL~yci~qF~eKDp~--- 314 (405)
+.++++.+++...+.+.-...+.+.+ -+. +. +.+....+.+...+..|.++.+.
T Consensus 669 ~~~~~~~~~l~~~f~p~~~~i~~~~l-~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~ 747 (1049)
T 3m1i_C 669 KTNVAVCTSMGADFYPQLGHIYYNML-QLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDD 747 (1049)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 77777766443333321111111111 110 00 11223344455566666665431
Q ss_pred ----cHHHHHHHHhhhC--CCCCchhHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhh-----C--CCchHHHHHHH
Q 015533 315 ----LADTVIRGLLRYW--PVTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCL-----T--SPHFQVHIIVT 381 (405)
Q Consensus 315 ----L~~~vi~~LLk~W--P~tns~KEvlFL~EleeiLe~~~~~~f~~i~~plF~~la~ci-----~--S~hfqVAErAl 381 (405)
+...++..++.-. +. .+.++..+|+-++.++..++ +.+...+..++..+..|. . +++..|.+...
T Consensus 748 ~~~~~~~~~l~~ll~~~~~~~-~~~~~~~~l~l~~~ii~~~~-~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f 825 (1049)
T 3m1i_C 748 VVKVLVEPLLNAVLEDYMNNV-PDARDAEVLNCMTTVVEKVG-HMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFY 825 (1049)
T ss_dssp HHHHTHHHHHHHHHHHHHHSC-GGGCCTHHHHHHHHHHHHHG-GGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCC-cccccHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHH
Confidence 1233333333322 21 23345778888888888776 346666666666666664 2 35666666654
Q ss_pred hhh
Q 015533 382 SLI 384 (405)
Q Consensus 382 ~i~ 384 (405)
.+.
T Consensus 826 ~ll 828 (1049)
T 3m1i_C 826 KLL 828 (1049)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=40.02 E-value=2.4e+02 Score=26.47 Aligned_cols=99 Identities=8% Similarity=0.000 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHHhhcCCChHHHhhcCCHHHHHHHhh-ccCCCChhHHHHHHHHHHHHhhccccchHHHHH-HHHHHHHH
Q 015533 167 HLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKLLD-LFDTEDHREREYLKMVLHRIYGRFMSHRPFIRA-GINNVFYR 244 (405)
Q Consensus 167 HLqlVYeillrfv~s~~~d~k~ak~~id~~Fi~~Ll~-lfdS~DpRERd~LktiLhrIY~Kf~~~R~fIRk-~i~nif~~ 244 (405)
|-...-+.|..++++. ..+..+....=+..|+. ++.|+++.=|...-.+|-.|-+.-...|..+.+ -.-..+.+
T Consensus 56 ~k~~Al~~L~~lv~~~----dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 56 EREGALELLADLCENM----DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHTSH----HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh----hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 4555667777787643 24445444445778999 999999999999999998887765555544332 22234445
Q ss_pred hhhcccCccCHHHHHHHHHHHHhcc
Q 015533 245 FIFETERHNGIGELLEILGSIINGF 269 (405)
Q Consensus 245 fi~e~~~~nGIaELLeilgSIInGF 269 (405)
.+.......-....++.++++++|+
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~ 156 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQ 156 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCC
Confidence 4433222222345667777777665
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=39.29 E-value=1.7e+02 Score=24.51 Aligned_cols=180 Identities=13% Similarity=0.076 Sum_probs=84.2
Q ss_pred HHHHHHHhhccCCCChhHHHHHHHHHHHHhhccccchH-HHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHhccCCCc
Q 015533 195 HTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRP-FIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPM 273 (405)
Q Consensus 195 ~~Fi~~Ll~lfdS~DpRERd~LktiLhrIY~Kf~~~R~-fIRk~i~nif~~fi~e~~~~nGIaELLeilgSIInGFa~PL 273 (405)
......|..++.|+|+..|...-..|..+-..-...+. ++....-..+.+.+... ...-....+.+++.+..|-
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~---- 85 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG---- 85 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSC----
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCC----
Confidence 34456677888899998888888887776533333332 22222334455555332 1111235666666665332
Q ss_pred HHHHHHHH-----HHHhhcCCCCCchhhchhHHHHHHHHHHHhCcc---------cHHHHHHHHhhhCCCCCchhHHHHH
Q 015533 274 KEEHKLLL-----VRAMLPLHKPKCVALYHQQLTYCVVQFVEKDYE---------LADTVIRGLLRYWPVTNCQKEVLFL 339 (405)
Q Consensus 274 KeEhk~fl-----~~vLiPLHk~~~l~~y~~qL~yci~qF~eKDp~---------L~~~vi~~LLk~WP~tns~KEvlFL 339 (405)
++.+..+ ...|+.+.+..... -...-..++......++. ....+++.+ +. .+..=...=+
T Consensus 86 -~~~~~~i~~~g~i~~L~~lL~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~---~~~~v~~~a~ 159 (210)
T 4db6_A 86 -NEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SS---PNEQILQEAL 159 (210)
T ss_dssp -HHHHHHHHHTTCHHHHHHHTTCSCHH-HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TC---SCHHHHHHHH
T ss_pred -cHHHHHHHHCCCHHHHHHHHcCCcHH-HHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHH-cC---CCHHHHHHHH
Confidence 2332222 34556666555321 111222333333332222 222333322 21 1211111111
Q ss_pred HHHHHHhhcCChhHHHHHH-HHHHHHHHHhhCCCchHHHHHHHhhhcc
Q 015533 340 GELEEVLDVTHPAEFQQCM-GPLFRQIGRCLTSPHFQVHIIVTSLIYM 386 (405)
Q Consensus 340 ~EleeiLe~~~~~~f~~i~-~plF~~la~ci~S~hfqVAErAl~i~~n 386 (405)
.-|..+... +++.-..+. .-....|.+.+.+.+..|.+.|+..+.+
T Consensus 160 ~aL~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~ 206 (210)
T 4db6_A 160 WALSNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 206 (210)
T ss_dssp HHHHHHHTS-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 222222221 122222221 2356778888899999999999876643
No 32
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=38.44 E-value=2.5e+02 Score=30.22 Aligned_cols=215 Identities=8% Similarity=0.072 Sum_probs=103.0
Q ss_pred CCchhHHHHHHHHHHHhhcCCCh--------------HHHhhcCCHHHHHHHhhccCC--CChhHHHHHHHHHHHHhhcc
Q 015533 164 AWPHLQLVYEILLRYIVSNGADK--------------KIAKRYIDHTFVLKLLDLFDT--EDHREREYLKMVLHRIYGRF 227 (405)
Q Consensus 164 sWpHLqlVYeillrfv~s~~~d~--------------k~ak~~id~~Fi~~Ll~lfdS--~DpRERd~LktiLhrIY~Kf 227 (405)
.+.++.-|.+.+++.+. +.... +...+|++ .++..|..++++ -|.++|..+-+.+-+|....
T Consensus 540 ~~~~l~~vl~~l~~~l~-~~v~~~A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 540 NPAYIPPAINLLVRGLN-SSMSAQATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp ---CHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 34678888887776652 32211 12234443 566777788877 57899999999998888755
Q ss_pred c--cchHHHHHHHHHHH---HHhhhccc----CccCHHHHHHHHHHHHhccCCCcHHHH--------HHHHHHHhhcCCC
Q 015533 228 M--SHRPFIRAGINNVF---YRFIFETE----RHNGIGELLEILGSIINGFALPMKEEH--------KLLLVRAMLPLHK 290 (405)
Q Consensus 228 ~--~~R~fIRk~i~nif---~~fi~e~~----~~nGIaELLeilgSIInGFa~PLKeEh--------k~fl~~vLiPLHk 290 (405)
. ..-+++.+.+..++ .+.+.+.. .-.-+.+.++.++.++.+......+.. -.-+...++|+..
T Consensus 618 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 697 (971)
T 2x1g_F 618 RPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFK 697 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHH
Confidence 3 12234443333222 22222111 112356788888888877654221110 0001111222110
Q ss_pred ------CCchhhchhHHHHHHHH---HHHhC-cccHHHHHHHHhhhCCCCCchhHHHHHHHHHHHhhcCChh-H----HH
Q 015533 291 ------PKCVALYHQQLTYCVVQ---FVEKD-YELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPA-E----FQ 355 (405)
Q Consensus 291 ------~~~l~~y~~qL~yci~q---F~eKD-p~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~-~----f~ 355 (405)
...-.. ......++.. .+.++ ..+...++.+|+.-.-.+ .+..||+-+..++.....+ + +.
T Consensus 698 ~~l~~~~~~~~v-~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~---~~~~~l~l~~~~i~~~~~~~~~~~~l~ 773 (971)
T 2x1g_F 698 RIAEMWVEEIDV-LEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTR---CCAPTLEISKTAIVMFFKDEGCKPLMQ 773 (971)
T ss_dssp HHHHHTTTCHHH-HHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC-----CCHHHHHHHHHHHTTCCC-----HHHH
T ss_pred HHHHhccccHHH-HHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCCcchHHHHH
Confidence 011111 1111111111 12222 225667777887665443 3478999999999877653 2 33
Q ss_pred HHHHHHHHHHHHhhCC-------CchHHHHHHHhhh
Q 015533 356 QCMGPLFRQIGRCLTS-------PHFQVHIIVTSLI 384 (405)
Q Consensus 356 ~i~~plF~~la~ci~S-------~hfqVAErAl~i~ 384 (405)
.+..+++..+-..+++ .+..|++....+.
T Consensus 774 ~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll 809 (971)
T 2x1g_F 774 QLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCL 809 (971)
T ss_dssp HHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHH
Confidence 3333333333333333 3556777665554
No 33
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=34.16 E-value=45 Score=37.09 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=52.3
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHhhcccc-chHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHhccCCCcHHHH
Q 015533 199 LKLLDLFDTEDHREREYLKMVLHRIYGRFMS-HRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKEEH 277 (405)
Q Consensus 199 ~~Ll~lfdS~DpRERd~LktiLhrIY~Kf~~-~R~fIRk~i~nif~~fi~e~~~~nGIaELLeilgSIInGFa~PLKeEh 277 (405)
.+.++.+. .+.+=|+.....+||+...+.. .-|++-+.+..++.. -...+.++.|.++|.+|..|..- +
T Consensus 705 l~~l~~~~-~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~-----~~~~e~~~fL~l~~qli~~f~~~----~ 774 (980)
T 3ibv_A 705 FLILDRMG-FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNS-----IDMNELVDVLSFISQLIHIYKDN----M 774 (980)
T ss_dssp HHHHHHSC-CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHH-----CCTTTHHHHHHHHHHHHHHTTTT----S
T ss_pred HHHHHhcC-CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHH----H
Confidence 34455554 5677778899999999986644 446666666555522 23567889999999999998543 4
Q ss_pred HHHHHHHhhcC
Q 015533 278 KLLLVRAMLPL 288 (405)
Q Consensus 278 k~fl~~vLiPL 288 (405)
..++...+-||
T Consensus 775 ~~~l~~ll~~l 785 (980)
T 3ibv_A 775 MEITNRMLPTL 785 (980)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 34
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=33.54 E-value=2.7e+02 Score=27.44 Aligned_cols=29 Identities=14% Similarity=0.318 Sum_probs=17.9
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHhhc
Q 015533 198 VLKLLDLFDTEDHREREYLKMVLHRIYGR 226 (405)
Q Consensus 198 i~~Ll~lfdS~DpRERd~LktiLhrIY~K 226 (405)
+..|+..+.|+|+..|...-..|.++..+
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~ 117 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSR 117 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 45566666677776666666666665443
No 35
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=32.65 E-value=2.3e+02 Score=31.09 Aligned_cols=108 Identities=11% Similarity=0.122 Sum_probs=54.6
Q ss_pred CcHHHHHHHHHHHhhcCCCCCc--------hhhchhHHHHHHHHHHHh-----CcccHHHHHHHHhhhCCCCCc-hhH--
Q 015533 272 PMKEEHKLLLVRAMLPLHKPKC--------VALYHQQLTYCVVQFVEK-----DYELADTVIRGLLRYWPVTNC-QKE-- 335 (405)
Q Consensus 272 PLKeEhk~fl~~vLiPLHk~~~--------l~~y~~qL~yci~qF~eK-----Dp~L~~~vi~~LLk~WP~tns-~KE-- 335 (405)
.+.++.+..+...|+.+..... -.....+++.|+...... -|++...++.. |- ++. .+|
T Consensus 83 ~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~----~~-~~~~~~~~~ 157 (1049)
T 3m1i_C 83 LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGS----SS-SSVNVCENN 157 (1049)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHH----HT-TCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHH----Hc-cChHHHHHH
Confidence 4556777777777766654321 123456677777765444 34444333333 22 222 233
Q ss_pred HHHHHHHHHHhhcCCh------------hHHHHHHHHHHHHHHHhhCC-CchHHHHHHHhhh
Q 015533 336 VLFLGELEEVLDVTHP------------AEFQQCMGPLFRQIGRCLTS-PHFQVHIIVTSLI 384 (405)
Q Consensus 336 vlFL~EleeiLe~~~~------------~~f~~i~~plF~~la~ci~S-~hfqVAErAl~i~ 384 (405)
+.+|.-+-|.+..... +.+..-...+|..+..|+.+ .+..|...||..+
T Consensus 158 l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l 219 (1049)
T 3m1i_C 158 MIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESL 219 (1049)
T ss_dssp HHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3333333322221111 33555566677777777754 3456666666543
No 36
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=31.81 E-value=2.5e+02 Score=24.16 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=35.9
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHhhccccc-hHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHhc
Q 015533 199 LKLLDLFDTEDHREREYLKMVLHRIYGRFMSH-RPFIRAGINNVFYRFIFETERHNGIGELLEILGSIING 268 (405)
Q Consensus 199 ~~Ll~lfdS~DpRERd~LktiLhrIY~Kf~~~-R~fIRk~i~nif~~fi~e~~~~nGIaELLeilgSIInG 268 (405)
..++.++.|+|+..|...-..|.++..+-... +.++...+-..+.+++.... ..-..+.+++++.+..|
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~ 84 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASG 84 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcC
Confidence 44566667788888877777776555542222 22333333345556654322 11223455666666543
No 37
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=29.66 E-value=61 Score=23.73 Aligned_cols=45 Identities=22% Similarity=0.354 Sum_probs=35.7
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHhhcCCCCCchhhchhHHHHHHH
Q 015533 260 EILGSIINGFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQLTYCVV 306 (405)
Q Consensus 260 eilgSIInGFa~PLKeEhk~fl~~vLiPLHk~~~l~~y~~qL~yci~ 306 (405)
++..|+|+.- -|.++||..+...|=-.-..+.++.|||-+...+.
T Consensus 5 sViRSvikSS--~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~~ 49 (56)
T 1oks_A 5 SVIRSIIKSS--RLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIM 49 (56)
T ss_dssp HHHHHHHHHS--CSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--ccchHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 4667787754 67899999999988888888999999997755543
No 38
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=28.80 E-value=5e+02 Score=26.82 Aligned_cols=78 Identities=9% Similarity=0.113 Sum_probs=51.8
Q ss_pred HHHHHHHH---hCccc-HHHHHHHHhhhCCCCCchhHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhhC--CCchHH
Q 015533 303 YCVVQFVE---KDYEL-ADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLT--SPHFQV 376 (405)
Q Consensus 303 yci~qF~e---KDp~L-~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~~f~~i~~plF~~la~ci~--S~hfqV 376 (405)
+++-.|.+ ..+.. ...+++.+.+.++..++.=+...|.-+..+.-.. |+ ... .+-..+..|.. |.+..|
T Consensus 502 wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~-p~-~~~---~i~~~l~~~~~~~~~d~ev 576 (621)
T 2vgl_A 502 YILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF-PE-VKA---TIQDVLRSDSQLKNADVEL 576 (621)
T ss_dssp HHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC-GG-GHH---HHHHHHSSHHHHSCSSHHH
T ss_pred HHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC-hH-HHH---HHHHHHHHHhcCCCCCHHH
Confidence 88888844 33333 3467888888888777766667777777665443 22 222 23344555666 999999
Q ss_pred HHHHHhhhc
Q 015533 377 HIIVTSLIY 385 (405)
Q Consensus 377 AErAl~i~~ 385 (405)
=+||..+|.
T Consensus 577 rdRA~~y~~ 585 (621)
T 2vgl_A 577 QQRAVEYLR 585 (621)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
No 39
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=26.27 E-value=2.9e+02 Score=23.16 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=54.0
Q ss_pred HHHHHHHhCcccHHHHHHHHhhhCCCCCchhHHHHHHHHHHHhhcCChh--------HHHHHHHHHHHHHHHhhCCCchH
Q 015533 304 CVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPA--------EFQQCMGPLFRQIGRCLTSPHFQ 375 (405)
Q Consensus 304 ci~qF~eKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~--------~f~~i~~plF~~la~ci~S~hfq 375 (405)
-|...+..++.-+..+++.|.|.=-..|+.-++.-|.-++.++..|+.. +|..-+.. .++..|.+
T Consensus 28 eicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~-------l~~~~~~~ 100 (140)
T 3ldz_A 28 DICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSN-------VLNKGHPK 100 (140)
T ss_dssp HHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHH-------HHHHSCHH
T ss_pred HHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHH-------HhccCCHH
Confidence 3455677888888888888877666688888888899999888888753 33333322 22347889
Q ss_pred HHHHHHhhhc
Q 015533 376 VHIIVTSLIY 385 (405)
Q Consensus 376 VAErAl~i~~ 385 (405)
|-++++.++.
T Consensus 101 Vk~kil~li~ 110 (140)
T 3ldz_A 101 VCEKLKALMV 110 (140)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 40
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=25.65 E-value=94 Score=34.53 Aligned_cols=107 Identities=6% Similarity=0.008 Sum_probs=56.6
Q ss_pred HHHHHHHHhhcCCCC----CchhhchhHHHHHHHHHHHhC-cccHHHHHHHHhhhCCCCCc-hhHHHHHHHHHHHhhcC-
Q 015533 277 HKLLLVRAMLPLHKP----KCVALYHQQLTYCVVQFVEKD-YELADTVIRGLLRYWPVTNC-QKEVLFLGELEEVLDVT- 349 (405)
Q Consensus 277 hk~fl~~vLiPLHk~----~~l~~y~~qL~yci~qF~eKD-p~L~~~vi~~LLk~WP~tns-~KEvlFL~EleeiLe~~- 349 (405)
.+..+...|+.+... ..-...-.+|+.+++..+.++ |.-=...+..++.-|-.++. .--..||.-+..|-|-+
T Consensus 82 ~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~ 161 (980)
T 3ibv_A 82 ELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIA 161 (980)
T ss_dssp HHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHH
Confidence 556666666655442 112245577888877776655 22222233333333322232 22345665555222211
Q ss_pred ------C---------------hhHHHHHHHHHHHHHHHhhCCCchHHHHHHHhh
Q 015533 350 ------H---------------PAEFQQCMGPLFRQIGRCLTSPHFQVHIIVTSL 383 (405)
Q Consensus 350 ------~---------------~~~f~~i~~plF~~la~ci~S~hfqVAErAl~i 383 (405)
+ ...+..+..-.+..+..|..+.+-.+++.||..
T Consensus 162 ~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~ 216 (980)
T 3ibv_A 162 DSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQV 216 (980)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 1 112445567778888888887788887777654
No 41
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=25.65 E-value=1.4e+02 Score=25.29 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=45.7
Q ss_pred hCcccHHHHHHHHhhhCCCCCchhHHHHHHHHHHHhhcCCh----------hHHHHHHHHHHHHHHHhhCCCchHHHHHH
Q 015533 311 KDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHP----------AEFQQCMGPLFRQIGRCLTSPHFQVHIIV 380 (405)
Q Consensus 311 KDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~----------~~f~~i~~plF~~la~ci~S~hfqVAErA 380 (405)
++.+-+..++..+.++=-++.+.+-+.+|.-+.+|+-.... ..|.+.+..+|..+.+|- ..+-.-.+|-
T Consensus 35 ~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~~-~~~r~kl~rL 113 (145)
T 3d9j_A 35 KAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCP-GDDKSKIVRV 113 (145)
T ss_dssp HTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSSC-GGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHH
Confidence 33333444444444443344555666777777776643322 357777788887776665 6777788999
Q ss_pred Hhhhc
Q 015533 381 TSLIY 385 (405)
Q Consensus 381 l~i~~ 385 (405)
+.+|.
T Consensus 114 l~iW~ 118 (145)
T 3d9j_A 114 LNLWQ 118 (145)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99996
No 42
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=25.44 E-value=4.9e+02 Score=25.73 Aligned_cols=109 Identities=10% Similarity=0.056 Sum_probs=60.7
Q ss_pred ChHHHhhcCCHHHHHHHhhccCCCChhHHHHHHHHHHHHhhccccchHHHHHH-HHHHHHHhhhcccCccC----HHHHH
Q 015533 185 DKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRAG-INNVFYRFIFETERHNG----IGELL 259 (405)
Q Consensus 185 d~k~ak~~id~~Fi~~Ll~lfdS~DpRERd~LktiLhrIY~Kf~~~R~fIRk~-i~nif~~fi~e~~~~nG----IaELL 259 (405)
++...+..++..-|-.|+.++.|+|+.-|+..-..|..|-+.-...|..+.+. .-..+...+...+.... ...+.
T Consensus 132 ~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~ 211 (510)
T 3ul1_B 132 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 211 (510)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHH
Confidence 34445555666678899999999999999999999988876555555554432 22344455433222211 12344
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHhhcCCCCCc
Q 015533 260 EILGSIINGFALPMKEEHKLLLVRAMLPLHKPKC 293 (405)
Q Consensus 260 eilgSIInGFa~PLKeEhk~fl~~vLiPLHk~~~ 293 (405)
..+..+..|-..........-...+|..|.....
T Consensus 212 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~ 245 (510)
T 3ul1_B 212 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 245 (510)
T ss_dssp HHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCC
Confidence 4555554443333333332333344555555443
No 43
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=24.35 E-value=6.1e+02 Score=26.30 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=52.8
Q ss_pred hHHHHHHHHHH---HhC---cccHHHHHHHHhhhCCCCCch-----hHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHH
Q 015533 299 QQLTYCVVQFV---EKD---YELADTVIRGLLRYWPVTNCQ-----KEVLFLGELEEVLDVTH-PAEFQQCMGPLFRQIG 366 (405)
Q Consensus 299 ~qL~yci~qF~---eKD---p~L~~~vi~~LLk~WP~tns~-----KEvlFL~EleeiLe~~~-~~~f~~i~~plF~~la 366 (405)
.++.+|+.+=+ .+. ..+...+.+.++-.|=..... .++-+|.-+.|+...+. .++-..++..+|..|-
T Consensus 239 dRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~ 318 (507)
T 3u0r_A 239 DRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLL 318 (507)
T ss_dssp HHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHH
Confidence 45556655532 222 235556666677778776665 88999999999999998 7778888999999998
Q ss_pred HhhCC
Q 015533 367 RCLTS 371 (405)
Q Consensus 367 ~ci~S 371 (405)
+.+=-
T Consensus 319 ~ymP~ 323 (507)
T 3u0r_A 319 EYMPL 323 (507)
T ss_dssp TTSCC
T ss_pred HHCCC
Confidence 87755
No 44
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=23.40 E-value=77 Score=22.81 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=24.6
Q ss_pred CCchHhHHHHHHHHhhccccccccCCCCCchHHHHHHHHH
Q 015533 64 VPSSEKLNLFIKKTQLCCVLCDFNDPSKMTREKEIKHRNL 103 (405)
Q Consensus 64 v~~~e~~~Lf~~Kl~~C~~ifDFsdp~~d~~~Ke~Kr~tL 103 (405)
++++....-|..||..|...=|| |++||+.+
T Consensus 15 i~np~~r~~Fe~ki~~~~tE~q~---------k~iKr~II 45 (49)
T 3bbz_A 15 VANPQMKQAFEQRLAKASTEDAL---------NDIKRDII 45 (49)
T ss_dssp CCSHHHHHHHHHHHHTCCSHHHH---------HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHH---------HHHHHHHH
Confidence 56677778899999999988666 57787765
No 45
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=22.22 E-value=77 Score=25.66 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=35.0
Q ss_pred cHHHHHHHHhhhCCCCCchhHHHHHHHHHHHhhcCChhHHHH
Q 015533 315 LADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPAEFQQ 356 (405)
Q Consensus 315 L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~~f~~ 356 (405)
....=|.+|..-=+...+..||.|+.|+-.++-.++.+-|..
T Consensus 21 i~~~~I~~l~~~~~~~d~e~qI~Flqel~~l~R~iP~~vf~d 62 (92)
T 1xl3_C 21 AGIHDIEHLANAFSLPTPEIXVRFYQDLXRMFRLFPLGVFSD 62 (92)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHTSCGGGSSC
T ss_pred cCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHCCHHhcCC
Confidence 445567788888899999999999999999999888776643
Done!