Query 015534
Match_columns 405
No_of_seqs 517 out of 3559
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:12:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1499 Protein arginine N-met 100.0 1.1E-64 2.4E-69 467.4 29.5 328 78-405 16-346 (346)
2 KOG1500 Protein arginine N-met 100.0 1.3E-45 2.9E-50 334.0 19.9 316 74-392 129-454 (517)
3 PF05185 PRMT5: PRMT5 arginine 100.0 1E-42 2.3E-47 342.9 23.7 274 96-390 152-447 (448)
4 KOG0822 Protein kinase inhibit 100.0 4.4E-29 9.5E-34 238.9 17.4 273 98-391 336-625 (649)
5 PTZ00357 methyltransferase; Pr 99.9 1.1E-22 2.4E-27 200.0 22.2 290 96-391 641-1038(1072)
6 KOG1501 Arginine N-methyltrans 99.9 3.3E-22 7.1E-27 187.8 15.4 258 97-355 35-320 (636)
7 COG2227 UbiG 2-polyprenyl-3-me 99.8 1.2E-20 2.6E-25 167.0 6.5 154 67-231 9-163 (243)
8 COG2226 UbiE Methylase involve 99.8 9E-19 1.9E-23 158.0 13.1 114 109-226 38-153 (238)
9 PLN02396 hexaprenyldihydroxybe 99.8 1.1E-18 2.4E-23 165.8 12.2 154 68-229 74-235 (322)
10 PF12847 Methyltransf_18: Meth 99.8 1.1E-17 2.3E-22 135.4 12.4 106 122-228 1-110 (112)
11 KOG1270 Methyltransferases [Co 99.7 1.8E-18 4E-23 154.1 7.1 152 67-229 31-195 (282)
12 PF01209 Ubie_methyltran: ubiE 99.7 1.2E-17 2.5E-22 152.3 9.9 106 118-227 43-151 (233)
13 PLN02233 ubiquinone biosynthes 99.7 1.6E-15 3.5E-20 141.2 14.2 116 110-228 61-181 (261)
14 PF08241 Methyltransf_11: Meth 99.7 7.6E-16 1.7E-20 120.2 10.2 94 127-227 1-95 (95)
15 PRK00107 gidB 16S rRNA methylt 99.6 2.5E-15 5.5E-20 132.2 13.7 100 120-228 43-144 (187)
16 PRK11207 tellurite resistance 99.6 2.6E-15 5.7E-20 134.0 13.4 103 120-226 28-131 (197)
17 PLN02244 tocopherol O-methyltr 99.6 2.6E-15 5.7E-20 145.1 14.4 105 121-228 117-222 (340)
18 PF03848 TehB: Tellurite resis 99.6 2.9E-15 6.3E-20 131.1 13.2 104 119-227 27-131 (192)
19 PF13847 Methyltransf_31: Meth 99.6 2.1E-15 4.6E-20 129.0 12.2 104 121-229 2-110 (152)
20 TIGR00477 tehB tellurite resis 99.6 2.2E-15 4.7E-20 134.3 11.6 103 119-226 27-130 (195)
21 TIGR02752 MenG_heptapren 2-hep 99.6 7.5E-15 1.6E-19 134.6 14.1 115 109-227 32-149 (231)
22 PF02353 CMAS: Mycolic acid cy 99.6 8.2E-15 1.8E-19 136.6 13.8 115 110-229 50-166 (273)
23 PF06325 PrmA: Ribosomal prote 99.6 3.4E-15 7.3E-20 139.8 10.6 110 107-228 148-258 (295)
24 COG2230 Cfa Cyclopropane fatty 99.6 6.7E-15 1.5E-19 135.2 12.3 116 110-229 60-176 (283)
25 COG2264 PrmA Ribosomal protein 99.6 5.1E-15 1.1E-19 137.1 11.5 113 107-228 149-262 (300)
26 PRK11036 putative S-adenosyl-L 99.6 7.2E-15 1.6E-19 136.7 12.2 103 121-227 43-147 (255)
27 TIGR00138 gidB 16S rRNA methyl 99.6 1.5E-14 3.2E-19 127.1 13.0 99 121-228 41-141 (181)
28 KOG1540 Ubiquinone biosynthesi 99.6 2.2E-14 4.7E-19 127.3 13.3 115 109-226 87-211 (296)
29 COG4076 Predicted RNA methylas 99.6 1.1E-14 2.4E-19 123.0 10.9 135 95-238 9-144 (252)
30 TIGR00452 methyltransferase, p 99.6 2E-14 4.3E-19 136.2 13.7 114 112-229 111-225 (314)
31 PRK15068 tRNA mo(5)U34 methylt 99.6 2.1E-14 4.6E-19 137.4 14.0 110 115-228 115-225 (322)
32 PRK12335 tellurite resistance 99.6 1.6E-14 3.4E-19 136.7 11.4 101 121-226 119-220 (287)
33 PF05175 MTS: Methyltransferas 99.6 6.9E-14 1.5E-18 121.9 14.4 112 109-226 22-137 (170)
34 PRK15451 tRNA cmo(5)U34 methyl 99.6 3.1E-14 6.7E-19 131.7 11.8 107 120-229 54-164 (247)
35 PTZ00098 phosphoethanolamine N 99.6 3.9E-14 8.5E-19 132.1 12.5 112 114-229 44-156 (263)
36 PF13649 Methyltransf_25: Meth 99.5 1.4E-14 3.1E-19 114.9 8.0 95 126-223 1-101 (101)
37 PF13659 Methyltransf_26: Meth 99.5 3.4E-14 7.4E-19 115.8 10.1 105 123-227 1-113 (117)
38 PF05401 NodS: Nodulation prot 99.5 3E-14 6.4E-19 123.2 9.1 106 119-229 40-146 (201)
39 PRK11873 arsM arsenite S-adeno 99.5 1.1E-13 2.4E-18 130.0 13.2 107 119-229 74-183 (272)
40 TIGR00406 prmA ribosomal prote 99.5 1.7E-13 3.6E-18 129.6 14.4 101 120-228 157-258 (288)
41 PRK10258 biotin biosynthesis p 99.5 6E-14 1.3E-18 130.2 11.2 106 113-228 33-139 (251)
42 TIGR02469 CbiT precorrin-6Y C5 99.5 2.8E-13 6E-18 111.3 13.9 105 118-229 15-122 (124)
43 COG4123 Predicted O-methyltran 99.5 8E-14 1.7E-18 125.9 11.1 107 120-227 42-168 (248)
44 PRK05134 bifunctional 3-demeth 99.5 9.5E-14 2.1E-18 127.4 10.7 146 69-228 3-150 (233)
45 PRK14103 trans-aconitate 2-met 99.5 1.7E-13 3.6E-18 127.6 12.1 102 115-228 22-125 (255)
46 smart00828 PKS_MT Methyltransf 99.5 1.2E-13 2.7E-18 125.9 10.8 102 124-229 1-104 (224)
47 PRK15001 SAM-dependent 23S rib 99.5 3.9E-13 8.4E-18 130.3 14.7 109 118-227 224-338 (378)
48 TIGR00740 methyltransferase, p 99.5 2.5E-13 5.4E-18 125.2 12.8 106 121-229 52-161 (239)
49 PRK13944 protein-L-isoaspartat 99.5 4.1E-13 8.8E-18 120.7 13.7 106 113-227 63-171 (205)
50 PLN02336 phosphoethanolamine N 99.5 2.8E-13 6.2E-18 137.3 13.6 107 118-229 262-369 (475)
51 PRK01683 trans-aconitate 2-met 99.5 3.2E-13 6.9E-18 125.9 12.3 105 114-228 23-129 (258)
52 PLN02490 MPBQ/MSBQ methyltrans 99.5 3.1E-13 6.8E-18 129.1 12.1 100 121-227 112-213 (340)
53 PRK00121 trmB tRNA (guanine-N( 99.5 3.3E-13 7.1E-18 120.9 11.4 106 122-228 40-155 (202)
54 PRK00517 prmA ribosomal protei 99.5 5.1E-13 1.1E-17 123.8 13.0 95 120-228 117-212 (250)
55 PRK06922 hypothetical protein; 99.5 5.2E-13 1.1E-17 135.1 13.5 108 120-229 416-537 (677)
56 TIGR03533 L3_gln_methyl protei 99.5 9.6E-13 2.1E-17 123.9 13.6 106 121-228 120-250 (284)
57 PRK08287 cobalt-precorrin-6Y C 99.4 1.7E-12 3.6E-17 115.1 14.1 101 118-227 27-129 (187)
58 PRK00377 cbiT cobalt-precorrin 99.4 1.2E-12 2.6E-17 117.0 13.2 105 117-227 35-143 (198)
59 TIGR00080 pimt protein-L-isoas 99.4 9.2E-13 2E-17 119.3 12.5 104 114-227 69-175 (215)
60 TIGR00537 hemK_rel_arch HemK-r 99.4 9.9E-13 2.1E-17 115.7 12.4 102 121-227 18-138 (179)
61 PRK08317 hypothetical protein; 99.4 1.4E-12 2.9E-17 119.8 13.8 116 109-229 6-124 (241)
62 PRK00216 ubiE ubiquinone/menaq 99.4 1.2E-12 2.7E-17 120.2 13.4 107 118-227 47-156 (239)
63 PRK13942 protein-L-isoaspartat 99.4 1.2E-12 2.5E-17 118.2 12.8 104 114-227 68-174 (212)
64 PRK14967 putative methyltransf 99.4 1.8E-12 3.8E-17 118.2 13.9 105 119-227 33-157 (223)
65 PF08242 Methyltransf_12: Meth 99.4 2.4E-14 5.1E-19 113.2 1.4 95 127-225 1-99 (99)
66 PF13489 Methyltransf_23: Meth 99.4 3.7E-13 8.1E-18 115.8 8.5 95 120-229 20-115 (161)
67 PRK11805 N5-glutamine S-adenos 99.4 1.4E-12 3.1E-17 123.9 12.8 103 124-228 135-262 (307)
68 PRK05785 hypothetical protein; 99.4 9.9E-13 2.2E-17 119.8 11.3 90 122-223 51-141 (226)
69 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 2.1E-12 4.5E-17 117.4 13.3 112 110-227 27-141 (223)
70 PF08003 Methyltransf_9: Prote 99.4 9.8E-13 2.1E-17 121.1 11.1 112 114-229 107-219 (315)
71 TIGR01983 UbiG ubiquinone bios 99.4 2.9E-12 6.3E-17 116.8 14.2 137 85-228 10-148 (224)
72 KOG4300 Predicted methyltransf 99.4 9.1E-13 2E-17 113.4 9.8 100 124-227 78-180 (252)
73 COG2242 CobL Precorrin-6B meth 99.4 3.7E-12 8E-17 109.4 13.1 109 113-229 25-135 (187)
74 TIGR01177 conserved hypothetic 99.4 2.7E-12 5.8E-17 123.8 13.3 115 110-227 170-292 (329)
75 TIGR02021 BchM-ChlM magnesium 99.4 4E-12 8.6E-17 115.6 13.4 103 120-227 53-156 (219)
76 TIGR00091 tRNA (guanine-N(7)-) 99.4 2.5E-12 5.4E-17 114.5 11.5 106 122-228 16-131 (194)
77 TIGR00536 hemK_fam HemK family 99.4 4.5E-12 9.7E-17 119.7 13.7 124 103-228 94-243 (284)
78 smart00138 MeTrc Methyltransfe 99.4 2.4E-12 5.1E-17 120.0 11.6 109 120-229 97-242 (264)
79 PRK11705 cyclopropane fatty ac 99.4 3.1E-12 6.7E-17 125.2 12.7 109 112-228 157-266 (383)
80 TIGR03840 TMPT_Se_Te thiopurin 99.4 6.1E-12 1.3E-16 113.3 13.6 102 121-227 33-150 (213)
81 PRK09489 rsmC 16S ribosomal RN 99.4 5.2E-12 1.1E-16 121.6 13.7 103 121-227 195-301 (342)
82 PRK14966 unknown domain/N5-glu 99.4 4.5E-12 9.8E-17 123.0 13.1 128 95-227 226-379 (423)
83 PRK07402 precorrin-6B methylas 99.4 8E-12 1.7E-16 111.5 13.6 107 114-228 32-141 (196)
84 PRK01544 bifunctional N5-gluta 99.4 3.8E-12 8.2E-17 129.0 12.9 133 94-228 86-268 (506)
85 PRK15128 23S rRNA m(5)C1962 me 99.4 3.9E-12 8.4E-17 124.7 12.4 108 121-229 219-339 (396)
86 TIGR02072 BioC biotin biosynth 99.4 5.5E-12 1.2E-16 115.9 12.5 100 121-228 33-134 (240)
87 KOG1271 Methyltransferases [Ge 99.4 3.3E-12 7.2E-17 107.8 9.7 105 125-229 70-181 (227)
88 TIGR03587 Pse_Me-ase pseudamin 99.4 5.6E-12 1.2E-16 112.9 11.7 98 120-227 41-140 (204)
89 PLN03075 nicotianamine synthas 99.4 1.2E-11 2.5E-16 115.3 13.8 106 122-229 123-233 (296)
90 PRK04266 fibrillarin; Provisio 99.4 1.3E-11 2.9E-16 112.0 13.6 102 117-227 67-174 (226)
91 PRK14968 putative methyltransf 99.3 1.7E-11 3.6E-16 108.5 13.4 105 121-227 22-146 (188)
92 PRK00312 pcm protein-L-isoaspa 99.3 1.6E-11 3.4E-16 111.0 13.5 103 114-227 70-173 (212)
93 TIGR02716 C20_methyl_CrtF C-20 99.3 1.6E-11 3.4E-16 117.4 14.1 116 111-229 138-254 (306)
94 PLN02336 phosphoethanolamine N 99.3 8.8E-12 1.9E-16 126.4 12.9 108 117-229 32-142 (475)
95 COG2813 RsmC 16S RNA G1207 met 99.3 1.7E-11 3.8E-16 113.1 13.1 112 112-226 148-263 (300)
96 PRK09328 N5-glutamine S-adenos 99.3 2.1E-11 4.6E-16 114.7 14.1 125 100-227 86-236 (275)
97 COG2890 HemK Methylase of poly 99.3 1.2E-11 2.7E-16 115.8 12.3 127 97-228 86-237 (280)
98 TIGR03534 RF_mod_PrmC protein- 99.3 2.6E-11 5.7E-16 112.4 14.2 117 107-227 73-215 (251)
99 COG4106 Tam Trans-aconitate me 99.3 3.8E-12 8.3E-17 110.5 7.6 114 107-231 16-131 (257)
100 PRK13255 thiopurine S-methyltr 99.3 2.7E-11 5.8E-16 109.5 13.5 101 121-226 36-152 (218)
101 PRK11783 rlmL 23S rRNA m(2)G24 99.3 7.5E-12 1.6E-16 131.8 11.3 106 122-228 538-655 (702)
102 COG2518 Pcm Protein-L-isoaspar 99.3 1.5E-11 3.2E-16 108.0 11.1 103 114-227 64-167 (209)
103 PRK10909 rsmD 16S rRNA m(2)G96 99.3 2.5E-11 5.5E-16 107.8 12.7 104 121-229 52-159 (199)
104 PLN02781 Probable caffeoyl-CoA 99.3 1.3E-11 2.7E-16 113.1 11.0 105 120-230 66-179 (234)
105 COG2263 Predicted RNA methylas 99.3 3.5E-11 7.5E-16 103.0 12.2 80 114-198 37-117 (198)
106 KOG2361 Predicted methyltransf 99.3 3.3E-12 7.2E-17 112.8 6.2 145 84-234 35-188 (264)
107 COG2519 GCD14 tRNA(1-methylade 99.3 3.6E-11 7.8E-16 107.9 12.5 105 114-227 86-193 (256)
108 TIGR03704 PrmC_rel_meth putati 99.3 5E-11 1.1E-15 110.3 13.4 119 105-228 68-215 (251)
109 PRK14121 tRNA (guanine-N(7)-)- 99.3 4.9E-11 1.1E-15 115.2 13.5 107 121-228 121-234 (390)
110 PRK04457 spermidine synthase; 99.3 2.6E-11 5.5E-16 112.9 11.2 108 121-228 65-176 (262)
111 PRK07580 Mg-protoporphyrin IX 99.3 5.9E-11 1.3E-15 108.5 13.5 102 120-226 61-163 (230)
112 PRK11088 rrmA 23S rRNA methylt 99.3 2.4E-11 5.1E-16 114.1 10.8 91 121-227 84-179 (272)
113 TIGR00446 nop2p NOL1/NOP2/sun 99.3 5.4E-11 1.2E-15 111.0 13.0 113 118-231 67-201 (264)
114 PRK06202 hypothetical protein; 99.3 2.8E-11 6E-16 111.0 10.6 96 120-220 58-159 (232)
115 PRK11188 rrmJ 23S rRNA methylt 99.3 7.7E-11 1.7E-15 106.0 12.7 97 120-227 49-163 (209)
116 PRK10901 16S rRNA methyltransf 99.3 7E-11 1.5E-15 117.9 13.6 112 118-231 240-374 (427)
117 PRK13943 protein-L-isoaspartat 99.2 1E-10 2.2E-15 111.4 13.9 102 116-227 74-178 (322)
118 TIGR03438 probable methyltrans 99.2 1E-10 2.2E-15 111.4 13.3 107 121-228 62-176 (301)
119 PF01135 PCMT: Protein-L-isoas 99.2 3E-11 6.5E-16 108.1 9.1 104 113-226 63-169 (209)
120 PHA03412 putative methyltransf 99.2 3.9E-11 8.4E-16 107.7 9.5 101 122-229 49-163 (241)
121 TIGR00563 rsmB ribosomal RNA s 99.2 9.3E-11 2E-15 117.0 13.1 114 118-231 234-370 (426)
122 PRK14901 16S rRNA methyltransf 99.2 8.8E-11 1.9E-15 117.4 12.8 113 118-231 248-386 (434)
123 smart00650 rADc Ribosomal RNA 99.2 8.1E-11 1.8E-15 102.5 11.0 106 115-228 6-112 (169)
124 KOG2904 Predicted methyltransf 99.2 1E-10 2.3E-15 105.0 11.8 128 100-228 123-284 (328)
125 PLN02585 magnesium protoporphy 99.2 1.1E-10 2.5E-15 110.8 12.7 100 121-226 143-247 (315)
126 PRK14904 16S rRNA methyltransf 99.2 1.4E-10 3E-15 116.3 13.9 112 118-231 246-379 (445)
127 PRK14903 16S rRNA methyltransf 99.2 1.2E-10 2.6E-15 115.9 12.9 113 118-231 233-368 (431)
128 PRK00811 spermidine synthase; 99.2 1.2E-10 2.6E-15 109.7 12.0 109 121-229 75-191 (283)
129 cd02440 AdoMet_MTases S-adenos 99.2 1.6E-10 3.4E-15 90.6 10.9 101 125-228 1-103 (107)
130 PRK14902 16S rRNA methyltransf 99.2 1.4E-10 3E-15 116.4 13.1 112 118-231 246-381 (444)
131 TIGR00095 RNA methyltransferas 99.2 2.1E-10 4.6E-15 101.4 12.4 105 121-229 48-159 (189)
132 PLN02672 methionine S-methyltr 99.2 2.1E-10 4.6E-15 123.4 14.5 136 94-230 89-279 (1082)
133 PHA03411 putative methyltransf 99.2 2.5E-10 5.4E-15 104.9 12.7 98 122-226 64-180 (279)
134 COG4122 Predicted O-methyltran 99.2 1.7E-10 3.8E-15 102.8 10.9 115 107-230 47-167 (219)
135 PF10672 Methyltrans_SAM: S-ad 99.2 1.3E-10 2.8E-15 108.4 10.3 126 98-229 105-238 (286)
136 PF10294 Methyltransf_16: Puta 99.2 2.1E-10 4.6E-15 100.1 11.0 106 118-226 41-153 (173)
137 COG1092 Predicted SAM-dependen 99.2 1.8E-10 3.8E-15 111.6 11.1 109 122-231 217-338 (393)
138 PRK03522 rumB 23S rRNA methylu 99.2 3E-10 6.6E-15 108.8 12.7 99 121-227 172-272 (315)
139 PLN02476 O-methyltransferase 99.2 2.7E-10 5.7E-15 105.7 11.8 105 120-230 116-229 (278)
140 PRK13168 rumA 23S rRNA m(5)U19 99.2 4.3E-10 9.4E-15 112.8 13.9 112 107-227 282-398 (443)
141 PF08704 GCD14: tRNA methyltra 99.2 2.1E-10 4.6E-15 104.8 10.4 107 113-227 31-144 (247)
142 TIGR00438 rrmJ cell division p 99.1 2.7E-10 5.9E-15 100.9 10.7 98 118-227 28-144 (188)
143 PF01596 Methyltransf_3: O-met 99.1 2.1E-10 4.6E-15 102.3 9.9 104 121-230 44-156 (205)
144 PF03291 Pox_MCEL: mRNA cappin 99.1 5.1E-10 1.1E-14 107.0 12.4 106 122-227 62-184 (331)
145 PTZ00146 fibrillarin; Provisio 99.1 5.6E-10 1.2E-14 103.7 11.9 102 118-227 128-235 (293)
146 COG4976 Predicted methyltransf 99.1 1.8E-11 4E-16 107.1 1.8 99 121-229 124-225 (287)
147 KOG1541 Predicted protein carb 99.1 3.6E-10 7.9E-15 98.5 9.4 100 122-228 50-159 (270)
148 KOG2899 Predicted methyltransf 99.1 3.2E-10 6.9E-15 100.2 9.0 108 118-227 54-207 (288)
149 PF03602 Cons_hypoth95: Conser 99.1 3.2E-10 7E-15 99.5 8.7 105 121-229 41-153 (183)
150 PRK13256 thiopurine S-methyltr 99.1 1.1E-09 2.4E-14 98.7 12.2 105 121-227 42-161 (226)
151 KOG3010 Methyltransferase [Gen 99.1 1.3E-10 2.9E-15 102.8 6.0 97 125-226 36-133 (261)
152 PLN02366 spermidine synthase 99.1 1.1E-09 2.4E-14 103.8 12.3 113 121-233 90-210 (308)
153 TIGR02081 metW methionine bios 99.1 4.6E-10 1E-14 100.0 9.1 91 121-222 12-105 (194)
154 KOG1501 Arginine N-methyltrans 99.1 2.7E-10 5.9E-15 108.2 7.7 220 145-388 389-631 (636)
155 TIGR00479 rumA 23S rRNA (uraci 99.1 1.6E-09 3.4E-14 108.5 13.0 113 107-227 277-394 (431)
156 TIGR02085 meth_trns_rumB 23S r 99.1 1.6E-09 3.4E-14 106.2 12.3 99 121-227 232-332 (374)
157 TIGR00417 speE spermidine synt 99.0 3E-09 6.5E-14 99.7 13.2 108 122-229 72-186 (270)
158 COG0742 N6-adenine-specific me 99.0 4.1E-09 8.9E-14 91.2 12.6 106 121-230 42-155 (187)
159 PF02475 Met_10: Met-10+ like- 99.0 1.3E-09 2.7E-14 96.7 9.7 99 120-226 99-199 (200)
160 COG1041 Predicted DNA modifica 99.0 2.3E-09 5E-14 100.9 11.9 117 109-228 184-309 (347)
161 COG2521 Predicted archaeal met 99.0 2.8E-10 6.1E-15 100.0 5.2 120 107-226 117-242 (287)
162 PLN02589 caffeoyl-CoA O-methyl 99.0 1.8E-09 3.9E-14 98.9 10.8 104 121-230 78-191 (247)
163 PRK01581 speE spermidine synth 99.0 1.8E-09 4E-14 102.9 11.0 109 121-229 149-268 (374)
164 KOG1975 mRNA cap methyltransfe 99.0 1.5E-09 3.3E-14 99.7 9.8 110 118-227 113-235 (389)
165 PF07021 MetW: Methionine bios 99.0 2E-09 4.4E-14 93.2 8.7 90 120-220 11-103 (193)
166 PRK11727 23S rRNA mA1618 methy 99.0 7.4E-09 1.6E-13 98.3 13.0 77 122-198 114-198 (321)
167 PF05724 TPMT: Thiopurine S-me 99.0 2.1E-09 4.6E-14 97.0 8.8 107 118-226 33-152 (218)
168 PRK03612 spermidine synthase; 99.0 2.2E-09 4.7E-14 109.5 9.8 110 121-230 296-416 (521)
169 PF01170 UPF0020: Putative RNA 98.9 1.3E-08 2.8E-13 89.3 12.6 117 109-226 15-148 (179)
170 PTZ00338 dimethyladenosine tra 98.9 5.4E-09 1.2E-13 98.6 10.7 88 111-202 25-113 (294)
171 PRK04338 N(2),N(2)-dimethylgua 98.9 7.7E-09 1.7E-13 101.1 10.8 98 123-228 58-157 (382)
172 PRK14896 ksgA 16S ribosomal RN 98.9 9.8E-09 2.1E-13 95.6 10.4 82 111-198 18-100 (258)
173 PF02390 Methyltransf_4: Putat 98.9 1.3E-08 2.8E-13 90.5 10.4 103 124-227 19-131 (195)
174 TIGR00478 tly hemolysin TlyA f 98.9 1E-08 2.2E-13 92.9 9.6 99 109-226 62-168 (228)
175 PRK00274 ksgA 16S ribosomal RN 98.9 7.8E-09 1.7E-13 97.0 9.1 80 114-198 34-114 (272)
176 COG2520 Predicted methyltransf 98.9 1.3E-08 2.8E-13 96.7 10.2 101 120-227 186-287 (341)
177 PF02527 GidB: rRNA small subu 98.8 4.7E-08 1E-12 85.7 12.7 111 110-229 35-148 (184)
178 TIGR02143 trmA_only tRNA (urac 98.8 3.5E-08 7.5E-13 95.9 11.8 94 124-227 199-309 (353)
179 KOG0820 Ribosomal RNA adenine 98.8 2.2E-08 4.9E-13 90.2 9.5 86 109-197 45-131 (315)
180 PRK05031 tRNA (uracil-5-)-meth 98.8 3.6E-08 7.9E-13 96.1 11.8 109 107-226 192-317 (362)
181 PRK04148 hypothetical protein; 98.8 5E-08 1.1E-12 80.2 10.7 77 110-195 4-83 (134)
182 PLN02232 ubiquinone biosynthes 98.8 1.1E-08 2.5E-13 88.0 7.3 77 149-228 1-80 (160)
183 PF05891 Methyltransf_PK: AdoM 98.8 1.8E-08 4E-13 89.0 7.9 104 122-227 55-159 (218)
184 COG3897 Predicted methyltransf 98.8 3E-08 6.4E-13 85.3 8.5 109 109-226 66-176 (218)
185 PLN02823 spermine synthase 98.8 5E-08 1.1E-12 93.5 10.9 107 122-228 103-219 (336)
186 KOG3420 Predicted RNA methylas 98.8 1.6E-08 3.4E-13 82.5 6.3 85 112-198 38-123 (185)
187 PF00891 Methyltransf_2: O-met 98.8 1.3E-07 2.7E-12 87.3 13.0 107 112-229 90-199 (241)
188 PF05219 DREV: DREV methyltran 98.7 5.1E-08 1.1E-12 88.2 9.7 94 122-229 94-188 (265)
189 PF01739 CheR: CheR methyltran 98.7 2.2E-07 4.8E-12 82.3 12.6 107 122-229 31-175 (196)
190 COG0220 Predicted S-adenosylme 98.7 1.3E-07 2.8E-12 85.5 11.0 104 124-228 50-163 (227)
191 KOG3191 Predicted N6-DNA-methy 98.7 1.4E-07 2.9E-12 80.2 10.2 101 122-226 43-165 (209)
192 COG2265 TrmA SAM-dependent met 98.7 1.6E-07 3.5E-12 92.9 11.4 115 105-227 276-394 (432)
193 PF09445 Methyltransf_15: RNA 98.7 5.8E-08 1.3E-12 82.8 7.1 73 125-198 2-78 (163)
194 PRK11933 yebU rRNA (cytosine-C 98.7 2.4E-07 5.2E-12 92.7 12.6 112 119-231 110-244 (470)
195 PF12147 Methyltransf_20: Puta 98.7 4.5E-07 9.8E-12 83.2 13.2 117 113-229 126-249 (311)
196 TIGR00755 ksgA dimethyladenosi 98.7 1.3E-07 2.7E-12 87.9 9.8 81 112-198 19-103 (253)
197 PF06080 DUF938: Protein of un 98.7 2E-07 4.3E-12 82.1 10.3 102 125-227 28-139 (204)
198 TIGR00308 TRM1 tRNA(guanine-26 98.6 1.9E-07 4.2E-12 90.8 11.3 98 123-228 45-146 (374)
199 COG0421 SpeE Spermidine syntha 98.6 2.6E-07 5.7E-12 86.2 11.5 113 124-236 78-197 (282)
200 COG0030 KsgA Dimethyladenosine 98.6 2.4E-07 5.2E-12 84.8 9.8 87 111-202 19-107 (259)
201 COG0116 Predicted N6-adenine-s 98.6 7.6E-07 1.6E-11 85.3 12.9 122 107-229 176-344 (381)
202 COG3963 Phospholipid N-methylt 98.6 6.8E-07 1.5E-11 75.0 10.3 112 110-228 36-155 (194)
203 PF01564 Spermine_synth: Sperm 98.6 3.5E-07 7.5E-12 84.3 9.5 107 122-228 76-190 (246)
204 PRK10611 chemotaxis methyltran 98.5 2.8E-07 6E-12 86.3 8.8 106 123-229 116-262 (287)
205 COG0357 GidB Predicted S-adeno 98.5 6.3E-07 1.4E-11 79.9 10.6 95 123-226 68-165 (215)
206 PF05148 Methyltransf_8: Hypot 98.5 9.9E-08 2.1E-12 83.6 5.3 97 108-228 61-157 (219)
207 PRK11783 rlmL 23S rRNA m(2)G24 98.5 9.2E-07 2E-11 93.6 12.8 118 108-226 175-344 (702)
208 KOG2940 Predicted methyltransf 98.5 7.5E-08 1.6E-12 84.6 3.7 99 123-227 73-172 (325)
209 KOG3045 Predicted RNA methylas 98.5 1.8E-07 3.9E-12 83.7 5.8 95 109-229 170-264 (325)
210 KOG2915 tRNA(1-methyladenosine 98.5 1.6E-06 3.4E-11 78.5 11.3 106 113-226 96-207 (314)
211 PF05958 tRNA_U5-meth_tr: tRNA 98.5 6.9E-07 1.5E-11 86.8 9.5 93 107-202 182-291 (352)
212 KOG1663 O-methyltransferase [S 98.5 1.7E-06 3.7E-11 76.6 11.0 109 120-234 71-188 (237)
213 PRK00536 speE spermidine synth 98.5 7.8E-07 1.7E-11 82.1 9.2 102 121-234 71-176 (262)
214 KOG1661 Protein-L-isoaspartate 98.5 9.7E-07 2.1E-11 76.9 9.1 98 120-226 80-190 (237)
215 PF04816 DUF633: Family of unk 98.4 1.3E-06 2.9E-11 77.9 10.0 96 126-226 1-98 (205)
216 PF08123 DOT1: Histone methyla 98.4 1.6E-06 3.4E-11 77.4 10.4 108 116-227 36-156 (205)
217 PF07942 N2227: N2227-like pro 98.4 4.1E-06 8.9E-11 77.4 12.9 102 121-226 55-199 (270)
218 PRK01544 bifunctional N5-gluta 98.4 2.5E-06 5.4E-11 86.8 11.1 106 122-228 347-461 (506)
219 PRK11760 putative 23S rRNA C24 98.4 2.6E-06 5.6E-11 80.5 10.0 88 120-222 209-296 (357)
220 PRK00050 16S rRNA m(4)C1402 me 98.3 1.9E-06 4E-11 81.0 8.3 77 118-197 15-98 (296)
221 COG1352 CheR Methylase of chem 98.3 4.3E-06 9.4E-11 77.4 10.5 106 122-228 96-240 (268)
222 COG1189 Predicted rRNA methyla 98.3 4.1E-06 8.8E-11 74.8 9.1 107 109-227 66-176 (245)
223 PF03141 Methyltransf_29: Puta 98.3 5.8E-07 1.3E-11 88.3 3.9 119 106-233 97-223 (506)
224 COG0144 Sun tRNA and rRNA cyto 98.2 2.2E-05 4.7E-10 76.4 13.1 115 118-233 152-292 (355)
225 KOG1269 SAM-dependent methyltr 98.2 2.8E-06 6.1E-11 82.1 6.7 108 118-228 106-214 (364)
226 PF01728 FtsJ: FtsJ-like methy 98.2 2.3E-06 4.9E-11 75.3 5.5 94 122-226 23-136 (181)
227 PF00398 RrnaAD: Ribosomal RNA 98.2 5.4E-06 1.2E-10 77.4 8.1 85 110-198 18-106 (262)
228 KOG2730 Methylase [General fun 98.2 2.3E-06 4.9E-11 75.0 4.9 99 122-224 94-197 (263)
229 PF02384 N6_Mtase: N-6 DNA Met 98.2 1E-05 2.2E-10 77.5 9.7 113 114-226 38-180 (311)
230 KOG2187 tRNA uracil-5-methyltr 98.1 3.7E-06 8E-11 82.6 5.7 77 105-183 366-443 (534)
231 PF13679 Methyltransf_32: Meth 98.1 1.6E-05 3.4E-10 66.9 8.6 75 120-195 23-105 (141)
232 COG0293 FtsJ 23S rRNA methylas 98.1 2.7E-05 5.8E-10 68.7 10.0 100 116-226 39-156 (205)
233 KOG1709 Guanidinoacetate methy 98.1 3.1E-05 6.7E-10 67.8 10.1 103 121-228 100-205 (271)
234 PRK10742 putative methyltransf 98.1 3.2E-05 6.9E-10 70.3 10.0 83 116-199 80-174 (250)
235 PF05971 Methyltransf_10: Prot 98.0 3.9E-05 8.5E-10 71.8 10.3 77 123-200 103-188 (299)
236 PF01269 Fibrillarin: Fibrilla 98.0 8.6E-05 1.9E-09 66.0 11.8 102 118-227 69-176 (229)
237 TIGR01444 fkbM_fam methyltrans 98.0 2.1E-05 4.5E-10 66.1 7.3 58 125-183 1-60 (143)
238 PF13578 Methyltransf_24: Meth 98.0 4.3E-06 9.4E-11 66.6 2.6 99 127-229 1-105 (106)
239 COG0500 SmtA SAM-dependent met 97.9 0.00012 2.5E-09 61.5 11.2 98 126-229 52-155 (257)
240 PF09243 Rsm22: Mitochondrial 97.9 0.00014 3.1E-09 68.1 12.3 110 110-221 21-133 (274)
241 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.9 4.9E-05 1.1E-09 71.6 9.0 113 118-231 81-221 (283)
242 KOG2352 Predicted spermine/spe 97.9 6.2E-05 1.4E-09 74.0 9.7 100 125-226 51-158 (482)
243 KOG3201 Uncharacterized conser 97.9 7.9E-06 1.7E-10 68.2 3.0 116 109-227 16-138 (201)
244 COG2384 Predicted SAM-dependen 97.9 0.00024 5.2E-09 62.9 12.3 94 122-220 16-111 (226)
245 COG4262 Predicted spermidine s 97.9 0.00011 2.5E-09 69.2 10.4 116 121-236 288-414 (508)
246 TIGR02987 met_A_Alw26 type II 97.8 7.4E-05 1.6E-09 76.8 9.9 76 122-198 31-121 (524)
247 KOG4058 Uncharacterized conser 97.8 9.1E-05 2E-09 60.9 8.1 103 118-228 68-171 (199)
248 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.8 6.1E-05 1.3E-09 69.3 7.9 109 119-227 53-197 (256)
249 PHA01634 hypothetical protein 97.8 0.0001 2.2E-09 59.1 7.4 73 120-196 26-99 (156)
250 PF03059 NAS: Nicotianamine sy 97.7 0.0005 1.1E-08 63.9 12.4 104 122-227 120-228 (276)
251 KOG3178 Hydroxyindole-O-methyl 97.7 0.00016 3.6E-09 68.3 9.2 95 124-228 179-274 (342)
252 TIGR03439 methyl_EasF probable 97.7 0.0006 1.3E-08 65.0 13.2 113 111-227 67-195 (319)
253 KOG1331 Predicted methyltransf 97.7 3.1E-05 6.7E-10 71.0 3.4 96 121-226 44-140 (293)
254 COG1889 NOP1 Fibrillarin-like 97.6 0.00064 1.4E-08 59.2 10.3 102 118-227 72-178 (231)
255 PF11968 DUF3321: Putative met 97.6 0.0002 4.4E-09 63.4 7.4 84 124-224 53-139 (219)
256 KOG3987 Uncharacterized conser 97.6 2.1E-05 4.5E-10 68.4 1.0 106 109-228 97-206 (288)
257 PF06962 rRNA_methylase: Putat 97.6 0.00026 5.7E-09 58.7 7.3 80 147-227 1-90 (140)
258 TIGR00006 S-adenosyl-methyltra 97.4 0.0011 2.5E-08 62.5 10.0 79 117-197 15-100 (305)
259 PF02005 TRM: N2,N2-dimethylgu 97.4 0.00073 1.6E-08 66.1 9.0 99 122-227 49-152 (377)
260 KOG2798 Putative trehalase [Ca 97.4 0.0018 4E-08 60.1 10.9 101 123-227 151-294 (369)
261 KOG1122 tRNA and rRNA cytosine 97.4 0.0014 3E-08 63.3 10.2 114 118-233 237-375 (460)
262 KOG4589 Cell division protein 97.4 0.0018 4E-08 55.7 9.7 97 119-226 66-181 (232)
263 PF07091 FmrO: Ribosomal RNA m 97.2 0.0025 5.5E-08 57.9 10.0 84 107-195 92-177 (251)
264 PF04445 SAM_MT: Putative SAM- 97.2 0.00097 2.1E-08 60.3 7.3 81 118-199 69-161 (234)
265 KOG1227 Putative methyltransfe 97.2 0.0001 2.2E-09 67.8 0.8 95 122-224 194-290 (351)
266 PF01861 DUF43: Protein of unk 97.2 0.014 2.9E-07 52.9 13.9 102 115-223 37-142 (243)
267 PF04672 Methyltransf_19: S-ad 97.2 0.003 6.5E-08 58.2 9.7 104 124-229 70-190 (267)
268 PF04989 CmcI: Cephalosporin h 97.0 0.0047 1E-07 54.7 9.4 121 100-230 14-148 (206)
269 COG5459 Predicted rRNA methyla 97.0 0.0022 4.8E-08 60.4 7.4 115 111-228 102-224 (484)
270 PF03141 Methyltransf_29: Puta 96.9 0.0015 3.2E-08 64.7 5.5 99 124-229 367-467 (506)
271 KOG3115 Methyltransferase-like 96.8 0.0046 1E-07 54.0 7.5 105 122-227 60-181 (249)
272 KOG2793 Putative N2,N2-dimethy 96.6 0.013 2.7E-07 53.7 9.1 101 122-225 86-195 (248)
273 KOG0024 Sorbitol dehydrogenase 96.4 0.0087 1.9E-07 56.2 6.7 96 118-227 165-271 (354)
274 KOG2920 Predicted methyltransf 96.4 0.0025 5.5E-08 58.7 3.2 108 118-228 112-233 (282)
275 COG1064 AdhP Zn-dependent alco 96.4 0.023 5E-07 54.4 9.7 92 118-227 162-257 (339)
276 COG1867 TRM1 N2,N2-dimethylgua 96.3 0.014 3E-07 55.8 7.7 98 123-228 53-153 (380)
277 COG1063 Tdh Threonine dehydrog 96.3 0.0091 2E-07 58.2 6.6 95 120-227 166-267 (350)
278 COG4798 Predicted methyltransf 96.3 0.016 3.4E-07 50.4 7.1 111 118-230 44-167 (238)
279 cd00315 Cyt_C5_DNA_methylase C 96.3 0.0068 1.5E-07 57.0 5.5 66 125-197 2-70 (275)
280 KOG1596 Fibrillarin and relate 96.3 0.016 3.5E-07 52.0 7.3 105 116-228 150-260 (317)
281 COG3129 Predicted SAM-dependen 96.3 0.019 4.1E-07 51.3 7.6 76 122-198 78-162 (292)
282 KOG1099 SAM-dependent methyltr 96.3 0.0067 1.4E-07 54.0 4.8 92 124-226 43-160 (294)
283 PRK09424 pntA NAD(P) transhydr 96.1 0.032 6.9E-07 56.7 9.7 96 120-227 162-283 (509)
284 PRK09880 L-idonate 5-dehydroge 96.0 0.03 6.5E-07 54.2 8.4 96 119-227 166-264 (343)
285 PF11599 AviRa: RRNA methyltra 95.9 0.14 3.1E-06 45.4 11.4 117 108-226 38-211 (246)
286 KOG2671 Putative RNA methylase 95.9 0.0065 1.4E-07 57.2 3.3 80 118-198 204-293 (421)
287 COG0275 Predicted S-adenosylme 95.9 0.065 1.4E-06 50.0 9.7 81 114-196 15-103 (314)
288 KOG1562 Spermidine synthase [A 95.9 0.031 6.8E-07 51.8 7.4 109 121-229 120-236 (337)
289 KOG1253 tRNA methyltransferase 95.9 0.0043 9.2E-08 61.2 1.9 103 121-230 108-217 (525)
290 COG0286 HsdM Type I restrictio 95.8 0.089 1.9E-06 53.6 11.5 112 113-224 177-321 (489)
291 PF01795 Methyltransf_5: MraW 95.7 0.022 4.7E-07 53.9 6.0 78 118-197 16-101 (310)
292 cd08283 FDH_like_1 Glutathione 95.7 0.081 1.7E-06 52.2 10.5 106 118-227 180-304 (386)
293 KOG2198 tRNA cytosine-5-methyl 95.6 0.053 1.2E-06 51.9 8.3 121 118-241 151-306 (375)
294 PF07757 AdoMet_MTase: Predict 94.8 0.05 1.1E-06 42.7 4.4 33 122-155 58-90 (112)
295 PF02737 3HCDH_N: 3-hydroxyacy 94.6 0.22 4.8E-06 43.5 8.8 97 125-231 1-116 (180)
296 TIGR00027 mthyl_TIGR00027 meth 94.6 0.56 1.2E-05 43.6 11.7 124 105-230 65-198 (260)
297 cd00401 AdoHcyase S-adenosyl-L 94.5 0.25 5.5E-06 49.0 9.7 87 120-228 199-288 (413)
298 TIGR00561 pntA NAD(P) transhyd 94.4 0.11 2.5E-06 52.7 7.2 94 121-226 162-281 (511)
299 PRK11524 putative methyltransf 94.3 0.14 3E-06 48.4 7.2 46 120-166 206-252 (284)
300 PF00145 DNA_methylase: C-5 cy 94.3 0.067 1.5E-06 51.2 5.1 64 125-197 2-69 (335)
301 cd08237 ribitol-5-phosphate_DH 94.2 0.24 5.1E-06 48.0 8.8 90 120-227 161-254 (341)
302 PF05711 TylF: Macrocin-O-meth 94.1 0.5 1.1E-05 43.5 10.1 124 104-232 56-215 (248)
303 PF03492 Methyltransf_7: SAM d 94.1 0.51 1.1E-05 45.6 10.7 108 120-227 14-181 (334)
304 COG2933 Predicted SAM-dependen 93.9 0.18 4E-06 46.0 6.6 89 119-222 208-296 (358)
305 PRK13699 putative methylase; P 93.8 0.24 5.3E-06 45.0 7.6 47 120-167 161-208 (227)
306 PF01555 N6_N4_Mtase: DNA meth 93.8 0.14 3E-06 46.1 6.0 42 120-162 189-231 (231)
307 KOG2078 tRNA modification enzy 93.8 0.035 7.6E-07 53.9 2.0 63 120-183 247-311 (495)
308 cd08281 liver_ADH_like1 Zinc-d 93.7 0.39 8.5E-06 47.0 9.5 94 118-227 187-288 (371)
309 PF02636 Methyltransf_28: Puta 93.7 0.34 7.4E-06 44.8 8.4 70 123-197 19-103 (252)
310 TIGR01202 bchC 2-desacetyl-2-h 93.6 0.21 4.5E-06 47.6 7.0 84 121-227 143-229 (308)
311 PRK01747 mnmC bifunctional tRN 93.6 0.29 6.3E-06 52.0 8.7 105 121-226 56-203 (662)
312 TIGR03451 mycoS_dep_FDH mycoth 93.5 0.52 1.1E-05 45.8 9.9 94 118-227 172-274 (358)
313 PLN02668 indole-3-acetate carb 93.3 0.55 1.2E-05 46.0 9.4 105 123-227 64-235 (386)
314 COG0686 Ald Alanine dehydrogen 93.1 0.3 6.6E-06 45.8 6.9 95 123-226 168-265 (371)
315 KOG2912 Predicted DNA methylas 92.8 0.33 7.1E-06 45.6 6.6 72 126-198 106-187 (419)
316 TIGR03366 HpnZ_proposed putati 92.8 0.32 7E-06 45.6 6.9 92 120-227 118-216 (280)
317 COG1568 Predicted methyltransf 92.6 0.5 1.1E-05 43.6 7.4 97 119-222 149-250 (354)
318 KOG3924 Putative protein methy 92.6 0.47 1E-05 45.9 7.7 111 114-228 184-307 (419)
319 cd05188 MDR Medium chain reduc 92.5 0.45 9.8E-06 43.6 7.4 96 118-227 130-230 (271)
320 cd08239 THR_DH_like L-threonin 92.3 0.31 6.7E-06 46.9 6.3 97 118-227 159-260 (339)
321 TIGR00675 dcm DNA-methyltransf 92.0 0.2 4.4E-06 48.0 4.4 65 126-197 1-67 (315)
322 cd08232 idonate-5-DH L-idonate 91.9 1 2.2E-05 43.2 9.4 90 122-227 165-260 (339)
323 PLN02740 Alcohol dehydrogenase 91.8 1.1 2.4E-05 44.0 9.7 45 118-162 194-241 (381)
324 KOG2651 rRNA adenine N-6-methy 91.8 0.67 1.4E-05 44.7 7.5 43 121-163 152-195 (476)
325 cd08254 hydroxyacyl_CoA_DH 6-h 91.7 1.5 3.3E-05 41.8 10.4 93 118-227 161-261 (338)
326 cd08230 glucose_DH Glucose deh 91.6 0.5 1.1E-05 45.9 6.9 92 120-227 170-267 (355)
327 PRK10309 galactitol-1-phosphat 91.6 0.47 1E-05 45.9 6.7 95 118-227 156-258 (347)
328 PF03269 DUF268: Caenorhabditi 91.3 0.43 9.3E-06 40.5 5.1 95 123-227 2-109 (177)
329 PRK11524 putative methyltransf 91.2 0.33 7.1E-06 45.8 5.0 55 173-228 9-79 (284)
330 PF04072 LCM: Leucine carboxyl 91.2 0.82 1.8E-05 40.0 7.2 110 105-215 60-182 (183)
331 COG4627 Uncharacterized protei 91.2 0.04 8.7E-07 46.1 -1.1 56 173-229 31-86 (185)
332 PF07279 DUF1442: Protein of u 91.2 3.5 7.6E-05 36.8 10.9 111 107-227 29-146 (218)
333 KOG0821 Predicted ribosomal RN 91.0 0.63 1.4E-05 41.5 6.0 70 112-183 40-110 (326)
334 COG1255 Uncharacterized protei 90.9 2.2 4.7E-05 34.0 8.3 86 124-227 15-102 (129)
335 TIGR02822 adh_fam_2 zinc-bindi 90.9 1.9 4.1E-05 41.5 10.0 89 118-227 161-252 (329)
336 PLN02827 Alcohol dehydrogenase 90.8 1.2 2.6E-05 43.8 8.7 97 118-227 189-293 (378)
337 TIGR00936 ahcY adenosylhomocys 90.7 1.8 4E-05 42.8 9.7 85 120-227 192-280 (406)
338 PF10237 N6-adenineMlase: Prob 90.5 5 0.00011 34.4 11.0 106 109-229 14-123 (162)
339 PF06859 Bin3: Bicoid-interact 90.4 0.16 3.4E-06 40.2 1.6 39 189-227 1-42 (110)
340 COG0270 Dcm Site-specific DNA 90.3 0.48 1E-05 45.7 5.2 68 124-197 4-75 (328)
341 PRK05476 S-adenosyl-L-homocyst 90.1 2 4.3E-05 42.9 9.4 84 121-227 210-297 (425)
342 PLN02494 adenosylhomocysteinas 90.0 1.4 3.1E-05 44.3 8.3 95 111-227 241-339 (477)
343 PF03721 UDPG_MGDP_dh_N: UDP-g 89.9 1.7 3.7E-05 38.2 8.0 100 125-229 2-120 (185)
344 COG4301 Uncharacterized conser 89.8 8.5 0.00018 35.2 12.1 104 121-227 77-191 (321)
345 PF00107 ADH_zinc_N: Zinc-bind 89.7 0.76 1.6E-05 37.3 5.4 81 132-229 1-89 (130)
346 PF05206 TRM13: Methyltransfer 89.7 1.4 3.1E-05 40.8 7.6 75 110-185 6-87 (259)
347 PRK10458 DNA cytosine methylas 89.6 1.7 3.7E-05 43.9 8.6 59 123-184 88-147 (467)
348 COG1062 AdhC Zn-dependent alco 89.4 0.94 2E-05 43.2 6.2 48 116-163 179-229 (366)
349 PRK05808 3-hydroxybutyryl-CoA 89.3 4.1 9E-05 38.2 10.7 96 125-230 5-119 (282)
350 PLN03154 putative allyl alcoho 89.3 1.4 3.1E-05 42.7 7.8 96 118-227 154-256 (348)
351 KOG0022 Alcohol dehydrogenase, 89.2 0.87 1.9E-05 42.9 5.7 46 118-163 188-236 (375)
352 PRK07066 3-hydroxybutyryl-CoA 89.2 2.6 5.6E-05 40.5 9.2 97 124-229 8-119 (321)
353 PF02254 TrkA_N: TrkA-N domain 89.0 2.8 6.1E-05 33.2 8.2 82 131-226 4-93 (116)
354 PRK13699 putative methylase; P 89.0 0.58 1.2E-05 42.6 4.5 54 173-227 2-70 (227)
355 cd08285 NADP_ADH NADP(H)-depen 88.9 0.74 1.6E-05 44.5 5.5 94 118-227 162-264 (351)
356 KOG2352 Predicted spermine/spe 88.7 0.53 1.2E-05 46.9 4.2 106 121-227 294-414 (482)
357 COG1565 Uncharacterized conser 88.5 1.7 3.7E-05 41.8 7.3 49 119-167 74-132 (370)
358 KOG1201 Hydroxysteroid 17-beta 88.4 2.1 4.6E-05 40.2 7.7 73 120-196 35-121 (300)
359 PRK06035 3-hydroxyacyl-CoA deh 88.4 3.5 7.5E-05 38.9 9.5 93 124-226 4-118 (291)
360 PRK07417 arogenate dehydrogena 88.1 2.7 5.8E-05 39.5 8.5 83 125-225 2-87 (279)
361 PRK08293 3-hydroxybutyryl-CoA 88.0 3.5 7.5E-05 38.9 9.3 96 124-228 4-119 (287)
362 cd08293 PTGR2 Prostaglandin re 87.8 3.1 6.7E-05 40.0 9.0 92 120-227 150-252 (345)
363 PLN02586 probable cinnamyl alc 87.8 2.4 5.1E-05 41.4 8.2 91 120-227 181-276 (360)
364 PRK07819 3-hydroxybutyryl-CoA 87.7 6.1 0.00013 37.3 10.7 97 124-230 6-122 (286)
365 PRK09260 3-hydroxybutyryl-CoA 87.7 2.8 6.1E-05 39.5 8.5 97 124-229 2-117 (288)
366 TIGR02819 fdhA_non_GSH formald 87.7 0.97 2.1E-05 44.7 5.5 102 118-227 181-297 (393)
367 PF10354 DUF2431: Domain of un 87.6 2.6 5.6E-05 36.3 7.4 100 128-227 2-123 (166)
368 TIGR02825 B4_12hDH leukotriene 87.6 3.6 7.9E-05 39.2 9.3 96 117-227 133-235 (325)
369 PRK07530 3-hydroxybutyryl-CoA 87.2 6.5 0.00014 37.1 10.6 98 124-231 5-121 (292)
370 cd08231 MDR_TM0436_like Hypoth 87.2 5.5 0.00012 38.6 10.4 95 120-227 175-278 (361)
371 TIGR00518 alaDH alanine dehydr 87.1 1.1 2.3E-05 44.1 5.3 96 122-226 166-264 (370)
372 cd08238 sorbose_phosphate_red 87.1 4.2 9.1E-05 40.4 9.7 46 118-163 171-222 (410)
373 cd08278 benzyl_alcohol_DH Benz 87.0 1.2 2.5E-05 43.5 5.6 94 118-227 182-283 (365)
374 cd08234 threonine_DH_like L-th 86.8 4.7 0.0001 38.4 9.6 94 118-227 155-255 (334)
375 TIGR03201 dearomat_had 6-hydro 86.7 3 6.5E-05 40.3 8.3 44 118-162 162-208 (349)
376 PRK11730 fadB multifunctional 86.7 3.8 8.3E-05 43.9 9.6 99 124-232 314-431 (715)
377 cd05278 FDH_like Formaldehyde 86.7 1.5 3.3E-05 42.1 6.2 92 119-226 164-264 (347)
378 PRK05854 short chain dehydroge 86.1 4.5 9.8E-05 38.5 9.0 76 121-197 12-101 (313)
379 KOG1098 Putative SAM-dependent 86.1 1 2.2E-05 46.2 4.4 98 118-226 40-155 (780)
380 PRK06701 short chain dehydroge 86.0 8.3 0.00018 36.3 10.6 74 121-197 44-132 (290)
381 TIGR02356 adenyl_thiF thiazole 85.8 2 4.3E-05 38.3 5.9 33 122-154 20-54 (202)
382 TIGR02437 FadB fatty oxidation 85.8 4.4 9.5E-05 43.5 9.5 99 124-232 314-431 (714)
383 COG3510 CmcI Cephalosporin hyd 85.7 5.7 0.00012 34.8 8.2 117 101-230 52-181 (237)
384 PRK11154 fadJ multifunctional 85.6 5.1 0.00011 43.0 9.9 98 124-231 310-427 (708)
385 TIGR02441 fa_ox_alpha_mit fatt 85.4 3.6 7.7E-05 44.3 8.6 98 124-231 336-452 (737)
386 cd01065 NAD_bind_Shikimate_DH 85.3 6.5 0.00014 32.9 8.7 81 110-197 6-89 (155)
387 COG0604 Qor NADPH:quinone redu 85.2 6 0.00013 38.1 9.4 96 117-227 137-239 (326)
388 PRK07502 cyclohexadienyl dehyd 85.2 4.9 0.00011 38.3 8.7 87 124-226 7-97 (307)
389 cd05285 sorbitol_DH Sorbitol d 85.1 6 0.00013 38.0 9.4 97 117-227 157-263 (343)
390 cd08295 double_bond_reductase_ 85.1 4.1 8.9E-05 39.1 8.3 97 117-227 146-249 (338)
391 PRK05786 fabG 3-ketoacyl-(acyl 84.9 11 0.00025 33.7 10.7 72 122-197 4-89 (238)
392 PRK05708 2-dehydropantoate 2-r 84.9 4 8.6E-05 38.9 7.9 93 124-227 3-102 (305)
393 cd08233 butanediol_DH_like (2R 84.9 2.1 4.7E-05 41.3 6.2 97 118-227 168-270 (351)
394 PF03686 UPF0146: Uncharacteri 84.8 2.7 5.9E-05 34.2 5.6 62 122-195 13-76 (127)
395 PRK06130 3-hydroxybutyryl-CoA 84.6 7 0.00015 37.2 9.5 96 124-228 5-114 (311)
396 cd08263 Zn_ADH10 Alcohol dehyd 84.4 6.9 0.00015 38.0 9.6 93 119-227 184-285 (367)
397 COG3315 O-Methyltransferase in 84.3 9.5 0.00021 36.2 10.0 123 105-229 76-209 (297)
398 cd08265 Zn_ADH3 Alcohol dehydr 84.0 2.5 5.5E-05 41.5 6.4 97 118-227 199-305 (384)
399 cd08255 2-desacetyl-2-hydroxye 83.8 5.9 0.00013 36.6 8.5 92 118-226 93-187 (277)
400 PLN02545 3-hydroxybutyryl-CoA 83.8 13 0.00029 35.0 11.0 98 124-231 5-121 (295)
401 cd05279 Zn_ADH1 Liver alcohol 83.5 2.9 6.2E-05 40.8 6.5 96 117-227 178-283 (365)
402 cd08294 leukotriene_B4_DH_like 83.4 9.1 0.0002 36.3 9.8 93 117-227 138-239 (329)
403 TIGR02818 adh_III_F_hyde S-(hy 83.4 3.3 7.2E-05 40.4 6.9 45 118-162 181-228 (368)
404 PRK12475 thiamine/molybdopteri 83.3 3.5 7.5E-05 40.0 6.8 75 122-196 23-123 (338)
405 PLN02514 cinnamyl-alcohol dehy 83.3 6.7 0.00014 38.1 9.0 93 120-227 178-273 (357)
406 cd08236 sugar_DH NAD(P)-depend 83.1 2.8 6.1E-05 40.2 6.2 94 118-227 155-256 (343)
407 cd08240 6_hydroxyhexanoate_dh_ 83.0 12 0.00026 36.0 10.5 92 120-227 173-272 (350)
408 TIGR02440 FadJ fatty oxidation 83.0 7.4 0.00016 41.7 9.7 98 124-231 305-422 (699)
409 PRK08306 dipicolinate synthase 82.4 9.2 0.0002 36.3 9.2 87 120-226 149-238 (296)
410 PF05050 Methyltransf_21: Meth 82.3 3 6.5E-05 35.1 5.4 53 128-180 1-61 (167)
411 cd08242 MDR_like Medium chain 81.7 10 0.00023 35.8 9.5 90 118-227 151-243 (319)
412 PRK07063 short chain dehydroge 81.4 8 0.00017 35.4 8.3 76 121-197 5-94 (260)
413 PRK05225 ketol-acid reductoiso 81.4 2.4 5.3E-05 42.3 4.9 91 120-230 33-132 (487)
414 PTZ00075 Adenosylhomocysteinas 80.8 6.2 0.00013 39.9 7.6 85 120-227 251-339 (476)
415 PRK07688 thiamine/molybdopteri 80.7 5 0.00011 38.9 6.8 74 122-196 23-123 (339)
416 COG1748 LYS9 Saccharopine dehy 80.7 5.7 0.00012 39.1 7.2 69 124-197 2-76 (389)
417 cd08286 FDH_like_ADH2 formalde 80.4 4.5 9.7E-05 38.9 6.5 96 118-227 162-264 (345)
418 TIGR02354 thiF_fam2 thiamine b 80.4 18 0.0004 32.0 9.9 33 122-154 20-54 (200)
419 PRK15001 SAM-dependent 23S rib 80.3 11 0.00024 37.0 9.2 92 125-227 47-140 (378)
420 PF00106 adh_short: short chai 79.8 8.5 0.00018 32.3 7.4 72 124-197 1-88 (167)
421 PLN02178 cinnamyl-alcohol dehy 79.6 9.1 0.0002 37.6 8.4 90 121-227 177-271 (375)
422 PRK08324 short chain dehydroge 79.6 14 0.0003 39.5 10.4 73 121-197 420-506 (681)
423 PRK05867 short chain dehydroge 79.5 9.2 0.0002 34.9 8.0 74 121-197 7-94 (253)
424 cd08279 Zn_ADH_class_III Class 79.4 4.6 9.9E-05 39.3 6.3 94 118-227 178-280 (363)
425 cd01483 E1_enzyme_family Super 79.4 7.9 0.00017 32.1 6.9 30 125-154 1-32 (143)
426 PRK07806 short chain dehydroge 79.3 31 0.00068 31.0 11.5 103 122-227 5-132 (248)
427 PF11899 DUF3419: Protein of u 79.2 5.8 0.00012 39.0 6.7 46 118-164 31-77 (380)
428 PRK06522 2-dehydropantoate 2-r 79.2 13 0.00028 35.0 9.1 91 125-227 2-98 (304)
429 PRK06249 2-dehydropantoate 2-r 79.1 6.6 0.00014 37.5 7.1 93 123-227 5-104 (313)
430 PF03446 NAD_binding_2: NAD bi 79.1 11 0.00025 32.0 7.9 85 125-227 3-92 (163)
431 PF06460 NSP13: Coronavirus NS 79.0 11 0.00023 34.7 7.8 111 104-227 42-167 (299)
432 PF02153 PDH: Prephenate dehyd 79.0 6.9 0.00015 36.3 7.0 74 136-226 1-76 (258)
433 cd00757 ThiF_MoeB_HesA_family 78.9 11 0.00025 34.0 8.3 75 122-196 20-118 (228)
434 PF02826 2-Hacid_dh_C: D-isome 78.8 2.3 4.9E-05 37.0 3.5 90 119-226 32-124 (178)
435 PRK06914 short chain dehydroge 78.7 11 0.00023 35.0 8.3 74 123-197 3-89 (280)
436 PRK06172 short chain dehydroge 78.5 11 0.00024 34.3 8.2 73 122-197 6-92 (253)
437 PF02558 ApbA: Ketopantoate re 78.4 5.1 0.00011 33.4 5.5 87 126-227 1-99 (151)
438 PRK12548 shikimate 5-dehydroge 78.4 14 0.00029 35.0 8.9 88 109-197 112-207 (289)
439 PRK06124 gluconate 5-dehydroge 78.4 11 0.00024 34.3 8.2 74 121-197 9-96 (256)
440 cd05281 TDH Threonine dehydrog 78.3 5.9 0.00013 38.0 6.6 94 120-227 161-260 (341)
441 PRK08644 thiamine biosynthesis 78.2 6.8 0.00015 35.2 6.5 74 122-195 27-123 (212)
442 PRK07677 short chain dehydroge 78.2 11 0.00023 34.4 8.1 72 123-197 1-86 (252)
443 PRK10083 putative oxidoreducta 78.0 11 0.00025 35.9 8.5 97 118-227 156-257 (339)
444 PRK06128 oxidoreductase; Provi 77.6 29 0.00062 32.6 11.0 74 121-197 53-142 (300)
445 PRK08339 short chain dehydroge 77.4 12 0.00026 34.5 8.2 75 121-197 6-93 (263)
446 cd08261 Zn_ADH7 Alcohol dehydr 77.4 4.2 9.1E-05 38.9 5.2 95 118-226 155-255 (337)
447 PF01210 NAD_Gly3P_dh_N: NAD-d 77.2 7.9 0.00017 32.8 6.3 94 125-229 1-103 (157)
448 PRK00094 gpsA NAD(P)H-dependen 77.0 14 0.0003 35.2 8.7 93 125-228 3-104 (325)
449 PRK07890 short chain dehydroge 77.0 14 0.0003 33.6 8.5 74 121-197 3-90 (258)
450 PRK08762 molybdopterin biosynt 76.8 5.7 0.00012 39.0 6.1 75 122-196 134-232 (376)
451 PRK09291 short chain dehydroge 76.5 13 0.00027 33.9 8.0 71 123-196 2-80 (257)
452 COG1893 ApbA Ketopantoate redu 76.4 9.5 0.00021 36.4 7.2 89 124-227 1-99 (307)
453 cd05284 arabinose_DH_like D-ar 76.4 7.6 0.00016 37.1 6.7 91 120-226 165-263 (340)
454 PRK07062 short chain dehydroge 76.2 14 0.0003 33.9 8.2 76 121-197 6-95 (265)
455 cd08245 CAD Cinnamyl alcohol d 76.2 30 0.00066 32.7 10.9 93 118-227 158-254 (330)
456 PF11899 DUF3419: Protein of u 76.1 5.7 0.00012 39.1 5.7 61 167-229 272-334 (380)
457 PRK07035 short chain dehydroge 76.0 15 0.00032 33.4 8.3 74 121-197 6-93 (252)
458 PLN03209 translocon at the inn 75.9 10 0.00022 39.3 7.7 77 118-196 75-166 (576)
459 PRK08945 putative oxoacyl-(acy 75.7 12 0.00026 33.8 7.6 76 120-197 9-100 (247)
460 cd08296 CAD_like Cinnamyl alco 75.6 15 0.00032 35.1 8.6 92 119-227 160-257 (333)
461 PRK08268 3-hydroxy-acyl-CoA de 75.5 22 0.00049 36.5 10.1 95 124-228 8-121 (507)
462 PLN02702 L-idonate 5-dehydroge 75.5 26 0.00057 33.9 10.4 97 118-227 177-283 (364)
463 KOG1205 Predicted dehydrogenas 75.4 14 0.0003 34.7 7.8 76 121-197 10-99 (282)
464 PRK10669 putative cation:proto 75.4 16 0.00035 37.9 9.3 63 124-195 418-487 (558)
465 TIGR02279 PaaC-3OHAcCoADH 3-hy 75.3 24 0.00051 36.3 10.2 97 123-229 5-120 (503)
466 PRK08223 hypothetical protein; 75.1 8.6 0.00019 36.2 6.4 74 122-195 26-123 (287)
467 TIGR00853 pts-lac PTS system, 75.1 17 0.00037 28.0 7.1 72 124-223 4-75 (95)
468 cd08300 alcohol_DH_class_III c 75.0 8.8 0.00019 37.4 6.9 97 118-227 182-286 (368)
469 cd08301 alcohol_DH_plants Plan 75.0 8.3 0.00018 37.5 6.7 45 118-162 183-230 (369)
470 PRK12937 short chain dehydroge 74.8 37 0.00081 30.4 10.6 74 121-197 3-91 (245)
471 PLN02256 arogenate dehydrogena 74.5 25 0.00055 33.4 9.6 90 119-226 32-124 (304)
472 PRK05876 short chain dehydroge 74.5 16 0.00035 33.9 8.2 74 121-197 4-91 (275)
473 COG5379 BtaA S-adenosylmethion 74.5 7 0.00015 36.6 5.4 46 120-166 61-107 (414)
474 COG1250 FadB 3-hydroxyacyl-CoA 74.4 13 0.00028 35.4 7.5 102 124-233 4-122 (307)
475 PF01262 AlaDh_PNT_C: Alanine 74.1 1 2.3E-05 38.8 0.1 41 121-162 18-61 (168)
476 PF07991 IlvN: Acetohydroxy ac 74.0 11 0.00025 32.2 6.2 89 122-229 3-95 (165)
477 TIGR00692 tdh L-threonine 3-de 74.0 6.5 0.00014 37.7 5.6 95 120-227 159-259 (340)
478 cd08277 liver_alcohol_DH_like 74.0 9.2 0.0002 37.2 6.7 45 118-162 180-227 (365)
479 PRK03562 glutathione-regulated 73.7 19 0.00041 38.0 9.3 64 123-195 400-470 (621)
480 PRK07904 short chain dehydroge 73.6 15 0.00033 33.6 7.7 75 121-196 6-94 (253)
481 cd01487 E1_ThiF_like E1_ThiF_l 73.5 12 0.00026 32.4 6.5 30 125-154 1-32 (174)
482 PRK07478 short chain dehydroge 73.1 19 0.0004 32.8 8.2 73 122-197 5-91 (254)
483 PRK09242 tropinone reductase; 73.1 19 0.00042 32.7 8.3 75 122-197 8-96 (257)
484 PRK13403 ketol-acid reductoiso 73.0 21 0.00045 34.3 8.4 90 120-229 13-106 (335)
485 cd08287 FDH_like_ADH3 formalde 73.0 7.6 0.00016 37.2 5.8 94 118-227 164-266 (345)
486 PRK08862 short chain dehydroge 72.8 17 0.00037 32.7 7.7 73 122-197 4-91 (227)
487 PRK09496 trkA potassium transp 72.8 44 0.00095 33.5 11.5 112 100-226 210-328 (453)
488 PRK05690 molybdopterin biosynt 72.8 11 0.00023 34.7 6.4 33 122-154 31-65 (245)
489 PRK06194 hypothetical protein; 72.6 18 0.00038 33.6 8.1 73 122-197 5-91 (287)
490 cd01492 Aos1_SUMO Ubiquitin ac 72.4 11 0.00024 33.3 6.3 75 122-196 20-117 (197)
491 PRK12921 2-dehydropantoate 2-r 72.2 13 0.00028 35.1 7.1 89 125-227 2-100 (305)
492 PF01488 Shikimate_DH: Shikima 72.2 7.9 0.00017 31.9 4.9 71 120-196 9-82 (135)
493 KOG2013 SMT3/SUMO-activating c 72.2 4 8.8E-05 40.7 3.5 74 122-195 11-109 (603)
494 PRK07097 gluconate 5-dehydroge 72.1 19 0.00042 33.0 8.1 74 121-197 8-95 (265)
495 PRK05866 short chain dehydroge 72.1 19 0.00041 33.8 8.2 73 122-197 39-125 (293)
496 PRK14620 NAD(P)H-dependent gly 72.0 23 0.00049 33.9 8.8 93 125-227 2-104 (326)
497 PF11312 DUF3115: Protein of u 71.9 5.4 0.00012 37.8 4.2 105 123-227 87-240 (315)
498 PRK09072 short chain dehydroge 71.9 18 0.0004 33.0 7.9 72 122-197 4-88 (263)
499 PRK15116 sulfur acceptor prote 71.8 16 0.00035 34.1 7.3 34 121-154 28-63 (268)
500 TIGR00497 hsdM type I restrict 71.8 29 0.00063 35.6 9.9 76 122-197 217-301 (501)
No 1
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-64 Score=467.40 Aligned_cols=328 Identities=64% Similarity=1.064 Sum_probs=317.2
Q ss_pred CCCCccccccccccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHH
Q 015534 78 EDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA 157 (405)
Q Consensus 78 ~~~~~~~~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~ 157 (405)
......++.||++|+++++|.+||+|..|+..|+.++..+..+.++++|||+|||||++++++|++|+++|+|||.|.++
T Consensus 16 ~~d~~~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia 95 (346)
T KOG1499|consen 16 PKDMTSDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA 95 (346)
T ss_pred ccccchhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH
Confidence 34455779999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred HHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEc
Q 015534 158 NMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAI 237 (405)
Q Consensus 158 ~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~ 237 (405)
+.|++.+..|++.+.|+++.+.++++.+|.+++|+|+++|||++++.+.++..++.+..++|+|||.++|..+++|++++
T Consensus 96 ~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i 175 (346)
T KOG1499|consen 96 DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAI 175 (346)
T ss_pred HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEec
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccccccchhhhhhhccCCeEEeeCCCcccccceeeeEeeCCCCCCCCCceeeeEEEEEeecceEeE
Q 015534 238 EDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHA 317 (405)
Q Consensus 238 ~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g 317 (405)
..+.+....+.||.++||||++++.+.+..+|+++.+++.+++++|+.+.++|+.+...+++.++.+|++.+.++|.+||
T Consensus 176 ~d~~~~~~~i~fW~~Vygfdms~~~~~~~~e~lv~vv~~~~l~t~~~~i~~~Dl~t~~i~d~~F~s~f~l~v~r~~~i~g 255 (346)
T KOG1499|consen 176 EDDSYKDDKIGFWDDVYGFDMSCIKKIAIKEPLVDVVDPEQLLTEPCLIKEFDLYTVKIEDLSFTSPFKLKVTRNGYLHA 255 (346)
T ss_pred cCchhhhhhcCccccccccchhhhhhhhhcccceeccChhHhcccceeeEEeeeeeeeccceeeccceEEEEccCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEcCCC--ceeEEecCCCCCCCCeeeEEEecCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcce-ee
Q 015534 318 LVAYFDVTFTKCH--KLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGR-HS 394 (405)
Q Consensus 318 ~~~wf~~~l~~~~--~~~~lst~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~ 394 (405)
|++|||+.|..+. ..+.+||+|.++.|||+|+||+|++|+.|++|+.|.+++.+++++.++|+++|.++|++.++ ..
T Consensus 256 ~v~yFDv~F~~~~~~~~~~fST~P~~p~THWKQtVfyl~~p~~v~~ge~i~g~it~~~~~~~~R~l~~~l~~~~~~~~~~ 335 (346)
T KOG1499|consen 256 FVAYFDVEFTGCHGKKRLGFSTSPSSPYTHWKQTVFYLENPLTVKEGEDITGTITMKPNKKNNRDLDISLSLNFKGQGLC 335 (346)
T ss_pred EEEEEEEeeccCCCCCcceeecCCCCCCceeeeEEEEecCccceecCceEEEEEEEeeCCCCCccceEEEEEecCCcccc
Confidence 9999999999866 78999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred eecceEEeeeC
Q 015534 395 AISRIQYYKMR 405 (405)
Q Consensus 395 ~~~~~~~~~~~ 405 (405)
+++.++.|+||
T Consensus 336 ~~~~~~~y~~~ 346 (346)
T KOG1499|consen 336 SFSESDSYPMR 346 (346)
T ss_pred ccccccccccC
Confidence 79999999996
No 2
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=1.3e-45 Score=333.98 Aligned_cols=316 Identities=38% Similarity=0.638 Sum_probs=280.0
Q ss_pred cCCCCCCCccccccccccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEec
Q 015534 74 MIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC 153 (405)
Q Consensus 74 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~ 153 (405)
.+...-+..++..||..|+.+...++|+.|..|+..|.++|..+.....++.|||+|||+|+++++++++|+++|++||.
T Consensus 129 vFs~rtEesSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA 208 (517)
T KOG1500|consen 129 VFSQRTEESSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA 208 (517)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEeh
Confidence 34444555667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeE
Q 015534 154 SQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (405)
Q Consensus 154 s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (405)
|+|.+.|++.++.|.+.++|+++.+.++++.+| +++|+|++++|++.+.+|.+++..+.+. ++|||.|.++|....++
T Consensus 209 S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiH 286 (517)
T KOG1500|consen 209 SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIH 286 (517)
T ss_pred hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCccccee
Confidence 999999999999999999999999999999998 9999999999999999999999999888 99999999999999999
Q ss_pred EEEccccccccc---cccccc--ccccccchhhhhhh----ccCCeEEeeCCCcccccceeeeEeeCCCCCCCCC-ceee
Q 015534 234 LTAIEDAEYKDD---KIEFWN--NVYGFDMSCIKKQA----MMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDA-SFTA 303 (405)
Q Consensus 234 ~~~~~~~~~~~~---~~~~w~--~~~g~~~~~~~~~~----~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~-~~~~ 303 (405)
++|+.++.++.+ +.+||. ..||.|++++.... +.+|.++.+++.-++..+ ....+||....++++ .+..
T Consensus 287 lAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~RilmA~s-v~h~~dF~~~kEedlh~i~i 365 (517)
T KOG1500|consen 287 LAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILMAKS-VFHVIDFLNMKEEDLHEIDI 365 (517)
T ss_pred ecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceeeccc-hHhhhhhhhcccchheeecc
Confidence 999998877654 457885 68999999887655 467888888776554444 456789998888887 4677
Q ss_pred eEEEEEeecceEeEEEEEEEEEEcCCCceeEEecCCCCCCCCeeeEEEecCCceecCCCCEEEEEEEEeeCCCCCceEEE
Q 015534 304 PFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDI 383 (405)
Q Consensus 304 ~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~lst~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~ 383 (405)
+++|.+...|.+||+++|||+.|++..-.+.++|+|..|.+||.|....|..|+.|++|++|++++.+-.+.+...+.+|
T Consensus 366 PlkF~~~~~g~iHGLAfWFDV~F~GS~~~~wlsTap~apltHwyqvrCll~~Pi~v~aGq~ltGr~~LiA~~~QSY~i~i 445 (517)
T KOG1500|consen 366 PLKFHALQCGRIHGLAFWFDVLFDGSTVQVWLSTAPTAPLTHWYQVRCLLSQPIFVKAGQTLTGRLLLIANSRQSYDITI 445 (517)
T ss_pred cceehhhhhcceeeeeeEEEEEeccceEEEccCCCCCCCcccceeeeeeccCchhhhcCCeeeeeEEEEEccccceeEEE
Confidence 88999999999999999999999986667889999999999999999999999999999999999999988877766666
Q ss_pred EEEEEEcce
Q 015534 384 MLKYSLQGR 392 (405)
Q Consensus 384 ~~~~~~~~~ 392 (405)
.++.+...+
T Consensus 446 ~l~~~~~l~ 454 (517)
T KOG1500|consen 446 TLSAKMTLQ 454 (517)
T ss_pred EEEeeeeee
Confidence 666655543
No 3
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=100.00 E-value=1e-42 Score=342.91 Aligned_cols=274 Identities=32% Similarity=0.487 Sum_probs=223.5
Q ss_pred hhHHhhcCHHhHHHHHHHHHhccCC----C----CCCEEEEEcCCCcHHHHHHHHcC-----CCeEEEEechH-HHHHHH
Q 015534 96 IHEEMLKDVVRTKSYQNVIYQNKFL----F----KDKVVLDVGAGTGILSLFCAKAG-----AAHVYAVECSQ-MANMAK 161 (405)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~i~~~~~~----~----~~~~VLDiGcG~G~l~~~la~~g-----~~~V~~vD~s~-~~~~a~ 161 (405)
.+..+.+|..++..|.+||..+... . ++.+|||||||+|.|+..++++| +.+|+|||.|+ ++..++
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~ 231 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ 231 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH
T ss_pred cHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH
Confidence 4566779999999999998665321 1 35789999999999999998876 67999999999 888888
Q ss_pred HHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEccccc
Q 015534 162 QIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE 241 (405)
Q Consensus 162 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~ 241 (405)
+++..+++.++|+++++|++++.++ +++|+||||+||+++.+| ..+.++.++.|+|||||++||+.+++|++|+.++.
T Consensus 232 ~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSElLGsfg~nE-l~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~ 309 (448)
T PF05185_consen 232 KRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSELLGSFGDNE-LSPECLDAADRFLKPDGIMIPSSYTSYLAPISSPK 309 (448)
T ss_dssp HHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE---BTTBTTT-SHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HH
T ss_pred HHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEeccCCccccc-cCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHH
Confidence 8889999999999999999999988 899999999999999888 55567899999999999999999999999999998
Q ss_pred ccccccccccccccccchhhhhhhccCCeEEeeCCCcccccc-eeeeEeeCCCCC---CCCCceeeeEEEEEeecceEeE
Q 015534 242 YKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNC-QLLKTMDISKMG---PGDASFTAPFKLVAQRNDYIHA 317 (405)
Q Consensus 242 ~~~~~~~~w~~~~g~~~~~~~~~~~~~p~~~~~~~~~~ls~p-~~~~~~d~~~~~---~~~~~~~~~~~~~~~~~g~~~g 317 (405)
++.+...+|. ...+..|++..+.+...|+++ ..+++|++.... ..+..+...++|.+.++|.+||
T Consensus 310 l~~~~~~~~~-----------~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~~r~~~~~F~i~~~g~vhG 378 (448)
T PF05185_consen 310 LYQEVRNWWN-----------PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDNSRSSELEFKIKRDGVVHG 378 (448)
T ss_dssp HHHHHHHHHG-----------HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGSEEEEEEEEEBSSSEEEEE
T ss_pred HHHHHHhhcc-----------hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhhheeeeEEEeeCCCcEEEE
Confidence 7766444332 344678898888888899999 999999988766 3556788999999999999999
Q ss_pred EEEEEEEEEcCCCceeEEecCCCC----CCCCeeeEEEecCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEc
Q 015534 318 LVAYFDVTFTKCHKLMGFSTGPKS----RATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQ 390 (405)
Q Consensus 318 ~~~wf~~~l~~~~~~~~lst~p~~----~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~ 390 (405)
|++||++.|++ ++.|||+|.. +.+||+|++|||++|+.|++|++|+++++++.+. ..||++|.++
T Consensus 379 fagwFd~~Ly~---~V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i~R~~~~-----~~vWYEW~v~ 447 (448)
T PF05185_consen 379 FAGWFDAVLYG---DVVLSTSPSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHIWRKTDD-----RKVWYEWSVE 447 (448)
T ss_dssp EEEEEEEEEEC---SEEEESSTTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEEEEECCS-----TCEEEEEEEE
T ss_pred EEEEEEEEeeC---CeeeecCCCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEEEEEcCC-----CcEEEEEEEe
Confidence 99999999996 6999999987 6799999999999999999999999999976553 3499999986
No 4
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=4.4e-29 Score=238.93 Aligned_cols=273 Identities=23% Similarity=0.315 Sum_probs=219.3
Q ss_pred HHhhcCHHhHHHHHHHHHhccCCC-------CCCEEEEEcCCCcHHHHHHHHc---C--CCeEEEEechH-HHHHHHHHH
Q 015534 98 EEMLKDVVRTKSYQNVIYQNKFLF-------KDKVVLDVGAGTGILSLFCAKA---G--AAHVYAVECSQ-MANMAKQIV 164 (405)
Q Consensus 98 ~~~l~d~~r~~~~~~~i~~~~~~~-------~~~~VLDiGcG~G~l~~~la~~---g--~~~V~~vD~s~-~~~~a~~~~ 164 (405)
..+-+|...+..|.+||..++... .-.+|+-+|+|.|.+.....++ - -.++++||.+| ++...+. .
T Consensus 336 etFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~ 414 (649)
T KOG0822|consen 336 ETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-R 414 (649)
T ss_pred hhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-h
Confidence 345567788888888876653221 1347889999999876554442 1 23899999999 7776655 4
Q ss_pred HHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEcccccccc
Q 015534 165 EANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKD 244 (405)
Q Consensus 165 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~ 244 (405)
....+.++++++..|++.+..|.++.|++|++.+|.+..+|-. +.+++.+.++|||+|+.||..++.|+.|+.+..++.
T Consensus 415 n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELS-PECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q 493 (649)
T KOG0822|consen 415 NFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELS-PECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQ 493 (649)
T ss_pred chhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCC-HHHHHHHHhhcCCCceEccchhhhhhcccccHHHHH
Confidence 4456678999999999999866689999999999998877644 578899999999999999999999999999988876
Q ss_pred cccccccccccccchhhhhhhccCCeEEeeCCCcccccceeeeEeeCCCCCC-CCCceeeeEEEEEeecceEeEEEEEEE
Q 015534 245 DKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGP-GDASFTAPFKLVAQRNDYIHALVAYFD 323 (405)
Q Consensus 245 ~~~~~w~~~~g~~~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~wf~ 323 (405)
+.... .....++.||+..+.+...|++|+.+++|....... -+-.+....+|.+..+|.+|||++|||
T Consensus 494 ~v~a~-----------~~~~~fe~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~s~eF~~~~~~~lHGFaGYFd 562 (649)
T KOG0822|consen 494 EVKAT-----------NDPNAFEAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSKSVEFKVKSNGVLHGFAGYFD 562 (649)
T ss_pred HHHhc-----------CCccccccceEEEecceeecCCCCceeEEecCCcccccccccceeEEEecCCCceEeecchhhh
Confidence 53321 001346789999999999999999999998765421 223466788999999999999999999
Q ss_pred EEEcCCCceeEEecCCCCCC---CCeeeEEEecCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcc
Q 015534 324 VTFTKCHKLMGFSTGPKSRA---THWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQG 391 (405)
Q Consensus 324 ~~l~~~~~~~~lst~p~~~~---~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~ 391 (405)
+.|+. +|.||+.|...+ .+|++++||+++|+.|.+|++|+++++...+ ...||++|.++.
T Consensus 563 ~~LYk---dI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~wR~~d-----~~kVWYEW~v~~ 625 (649)
T KOG0822|consen 563 AVLYK---DIFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHFWRCVD-----STKVWYEWSVES 625 (649)
T ss_pred hhhhh---eeeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEEEEEeC-----CceeEEEEEeee
Confidence 99997 899999998644 6999999999999999999999999997653 466999999984
No 5
>PTZ00357 methyltransferase; Provisional
Probab=99.91 E-value=1.1e-22 Score=200.02 Aligned_cols=290 Identities=18% Similarity=0.225 Sum_probs=202.9
Q ss_pred hhHHhhcCHHhHHHHHHHHHhccCC------------------------------C---CCCEEEEEcCCCcHHHHHHHH
Q 015534 96 IHEEMLKDVVRTKSYQNVIYQNKFL------------------------------F---KDKVVLDVGAGTGILSLFCAK 142 (405)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~i~~~~~~------------------------------~---~~~~VLDiGcG~G~l~~~la~ 142 (405)
.+..+-+|...++.|.++|...+.. . ....|+-+|+|.|.|...+.+
T Consensus 641 TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLr 720 (1072)
T PTZ00357 641 VYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLH 720 (1072)
T ss_pred hHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHH
Confidence 3344667888888888877655410 0 113689999999977554444
Q ss_pred ----cCC-CeEEEEechH-HHHHHHHHH-HHcCC-------CCcEEEEEcccccccCCC-----------CceeEEEEcc
Q 015534 143 ----AGA-AHVYAVECSQ-MANMAKQIV-EANGF-------SNVITVLKGKIEEIELPV-----------TKVDIIISEW 197 (405)
Q Consensus 143 ----~g~-~~V~~vD~s~-~~~~a~~~~-~~~~~-------~~~i~~~~~d~~~~~~~~-----------~~~D~Iv~~~ 197 (405)
.|. .+|++||.++ .+.....+. ....+ .++|+++..|+..+..+. +++|+||+|+
T Consensus 721 Aak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSEL 800 (1072)
T PTZ00357 721 AVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSEL 800 (1072)
T ss_pred HHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhh
Confidence 332 3899999996 554444432 33344 346999999999986431 3799999999
Q ss_pred ccccccChhhHHHHHHHHHhcccC----Cc-------EEEecCceeEEEEcccccccccccccccccccccch---h--h
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVD----DG-------IVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS---C--I 261 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~Lkp----gG-------~lip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~---~--~ 261 (405)
+|.|..+|-. +.+|+.+.+.||+ +| +.||+.++.|+.|+.+..++...... ...|+-.. + .
T Consensus 801 LGSFGDNELS-PECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~--~~~gltvP~p~c~~~ 877 (1072)
T PTZ00357 801 LGSLGDNELS-PECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEA--AVKGLTVPPPGCHDH 877 (1072)
T ss_pred hcccccccCC-HHHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHHh--hhcccccCCcccccc
Confidence 9998888754 5677888888875 55 58999999999999998876552210 01111110 0 0
Q ss_pred hhhhccCCeEEeeCCCcccccceeeeEeeCCCCCCC-----------------CCceeeeEEEEEeecceEeEEEEEEEE
Q 015534 262 KKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPG-----------------DASFTAPFKLVAQRNDYIHALVAYFDV 324 (405)
Q Consensus 262 ~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~-----------------~~~~~~~~~~~~~~~g~~~g~~~wf~~ 324 (405)
....+..+|+..+.....|+.|+++++|........ +..+...+.|.+..++.+|||++||++
T Consensus 878 haa~fet~YVV~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d~vlHGFAGYFdA 957 (1072)
T PTZ00357 878 HAALNHTLLVTNLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRCCGLAGYFSA 957 (1072)
T ss_pred chhhcccceEEEecceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEecCCCcceeeeeeEEEE
Confidence 112245678888888888899999999988654321 124678889999999999999999999
Q ss_pred EEcCCC--ceeEEecCCCCCC---CCeeeEEEecC---CceecCCCC---------EEEEEEEEeeCCCCCceEEEEEEE
Q 015534 325 TFTKCH--KLMGFSTGPKSRA---THWKQTVLYLE---DVLTICEGE---------AISGSLTVAPNKKNPRDVDIMLKY 387 (405)
Q Consensus 325 ~l~~~~--~~~~lst~p~~~~---~~W~q~v~~l~---~p~~v~~g~---------~i~~~~~~~~~~~~~r~~~~~~~~ 387 (405)
.|+++. ..+.|||.|...+ -+|++.+|||+ .+..++.|+ .|.+.+..+.+-.. ..||++|
T Consensus 958 vLYkDVt~~~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~~~~~~~~~i~~~l~Rr~~~~e---~rVwYew 1034 (1072)
T PTZ00357 958 VLYQSATAPATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVAIRVQLDRRTSLAE---QRVWYEW 1034 (1072)
T ss_pred EeecCCCccceEeecCCCCCCCCccceeeeEEecCccccceEeeccccccccccceeEEEeeeecccccc---ceEEEEE
Confidence 999721 1278999998644 58999999998 566677776 66666665543344 3499999
Q ss_pred EEcc
Q 015534 388 SLQG 391 (405)
Q Consensus 388 ~~~~ 391 (405)
++.-
T Consensus 1035 ~v~~ 1038 (1072)
T PTZ00357 1035 SVTY 1038 (1072)
T ss_pred EEee
Confidence 8753
No 6
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=99.88 E-value=3.3e-22 Score=187.78 Aligned_cols=258 Identities=22% Similarity=0.297 Sum_probs=193.4
Q ss_pred hHHhhcCHHhHHHHHHHHHhccCCCC-----C-CEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCC
Q 015534 97 HEEMLKDVVRTKSYQNVIYQNKFLFK-----D-KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF 169 (405)
Q Consensus 97 ~~~~l~d~~r~~~~~~~i~~~~~~~~-----~-~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~ 169 (405)
+.+|++|..|+..|...|.......+ | .-|||||+|||+++++++++|+..|+|+|.-. |.+.|++...+||+
T Consensus 35 y~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~ 114 (636)
T KOG1501|consen 35 YLDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM 114 (636)
T ss_pred HHHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC
Confidence 45699999999999998886543222 2 26899999999999999999999999999999 99999999999999
Q ss_pred CCcEEEEEcccccccCC-CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEcccccccccccc
Q 015534 170 SNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIE 248 (405)
Q Consensus 170 ~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~~~~ 248 (405)
+++|+++....+++... ..+.|+++.+.+..-+.+++.++.+-++..+++++|...+|.++++|++++++..+..-...
T Consensus 115 SdkI~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~~l~~~ndl 194 (636)
T KOG1501|consen 115 SDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVESTFLCNLNDL 194 (636)
T ss_pred ccceeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhhhhhhhhcc
Confidence 99999999999988754 34699999998888888999999999999999999999999999999999998755431110
Q ss_pred c---ccccccccc--hhhhhhhc-----cCCeEEee-CCCcccccceeeeEeeCCCCCCCCCceeeeEEEEEeecceEeE
Q 015534 249 F---WNNVYGFDM--SCIKKQAM-----MEPLVDTV-DQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHA 317 (405)
Q Consensus 249 ~---w~~~~g~~~--~~~~~~~~-----~~p~~~~~-~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g 317 (405)
+ -....|..+ ..+....- ...+.+.. ...++|+++..+|.+||.............+....-.+|++..
T Consensus 195 ~~~~~~ts~gv~~~p~~lesc~G~~sv~d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s~s~~~~~r~~va~~Sg~~~~ 274 (636)
T KOG1501|consen 195 RNNEAKTSDGVRLVPPGLESCFGIKSVQDSQLVDAIEKEFKLLSSEGTIFYSDFPRWIDSNSEIEELRPPVAVHSGPLRS 274 (636)
T ss_pred ccccccccCCcccCCCccccCCCchhHHHHHHhhcchhhheeecCcceeEEeecchhhhcchhhhhhcCcccccccchhh
Confidence 0 001112111 00000000 00011111 2347899999999999984322211112234556678999999
Q ss_pred EEEEEEEEEcCCCceeEEecCCCCCC---------CCeeeEEEecCC
Q 015534 318 LVAYFDVTFTKCHKLMGFSTGPKSRA---------THWKQTVLYLED 355 (405)
Q Consensus 318 ~~~wf~~~l~~~~~~~~lst~p~~~~---------~~W~q~v~~l~~ 355 (405)
+..||+.+++. .+...+..+|.+.. .||.|++.++++
T Consensus 275 ~l~wwdi~mD~-~g~~f~~m~p~w~~~~~~~~~~~~~weq~c~y~~~ 320 (636)
T KOG1501|consen 275 NLLWWDISMDQ-FGFSFLVMQPLWTGVTIGNSVFGLLWEQACPYPKE 320 (636)
T ss_pred eeeeeeeeecc-CcceEEEecceecCCChHHHHHHHHHHHhcCCChh
Confidence 99999999995 55677888887532 599999999884
No 7
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.82 E-value=1.2e-20 Score=167.05 Aligned_cols=154 Identities=22% Similarity=0.272 Sum_probs=124.5
Q ss_pred ccCCCCCcCCCCCCCccccccccccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCC
Q 015534 67 MCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA 146 (405)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~ 146 (405)
+.++++.++++|+.++ ..||+..+.+..-..+ +..|...+...+.. ....+|.+|||||||.|+++..+|+.|+
T Consensus 9 ~~~id~~e~~~F~~la--~~wwd~~g~f~~LH~~--N~~rl~~i~~~~~~-~~~l~g~~vLDvGCGgG~Lse~mAr~Ga- 82 (243)
T COG2227 9 TQNVDYKELDKFEALA--SRWWDPEGEFKPLHKI--NPLRLDYIREVARL-RFDLPGLRVLDVGCGGGILSEPLARLGA- 82 (243)
T ss_pred cccCCHHHHHHHHHHH--hhhcCCCCceeeeeee--ccchhhhhhhhhhc-ccCCCCCeEEEecCCccHhhHHHHHCCC-
Confidence 4567888899999998 8999988887644433 33333333322221 1226899999999999999999999985
Q ss_pred eEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEE
Q 015534 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (405)
Q Consensus 147 ~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (405)
.|+|+|+++ +++.|+.+...+++. +++....++++....++||+|+|. ..+.|.+++..++.++.+++||||.+
T Consensus 83 ~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cm---EVlEHv~dp~~~~~~c~~lvkP~G~l 157 (243)
T COG2227 83 SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCM---EVLEHVPDPESFLRACAKLVKPGGIL 157 (243)
T ss_pred eeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEh---hHHHccCCHHHHHHHHHHHcCCCcEE
Confidence 999999999 999999999999975 889999999998666899999993 44667788999999999999999999
Q ss_pred EecCce
Q 015534 226 LPDKAS 231 (405)
Q Consensus 226 ip~~~~ 231 (405)
+.++..
T Consensus 158 f~STin 163 (243)
T COG2227 158 FLSTIN 163 (243)
T ss_pred EEeccc
Confidence 987654
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.79 E-value=9e-19 Score=158.03 Aligned_cols=114 Identities=23% Similarity=0.341 Sum_probs=101.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (405)
.|.+.+.......+|.+|||||||||.+++.+++ .|..+|+|+|+|+ |++.|++++...+..+ ++|+++|+++++++
T Consensus 38 ~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~ 116 (238)
T COG2226 38 LWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFP 116 (238)
T ss_pred HHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCC
Confidence 4555555555556899999999999999999999 5678999999999 9999999999988876 99999999999999
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+++||+|.+ .+.+.+..+++.+++++.|+|||||+++
T Consensus 117 D~sFD~vt~---~fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 117 DNSFDAVTI---SFGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred CCccCEEEe---eehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 999999998 5667777899999999999999999876
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.78 E-value=1.1e-18 Score=165.81 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=121.7
Q ss_pred cCCCCCcCCCCCCCccccccccccCchhhhHHhhcCHHhHHHHHHHHHhcc-------CCCCCCEEEEEcCCCcHHHHHH
Q 015534 68 CDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNK-------FLFKDKVVLDVGAGTGILSLFC 140 (405)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~-------~~~~~~~VLDiGcG~G~l~~~l 140 (405)
..++.+++.+|+.++ +.||+..+.+..+..| +..|...+.+.+.+.. ...++.+|||||||+|.++..+
T Consensus 74 ~s~~~~e~~~f~~~a--~~WW~~~g~~~~lh~~--N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~L 149 (322)
T PLN02396 74 TSLNEDELAKFSAIA--DTWWHSEGPFKPLHQM--NPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPL 149 (322)
T ss_pred CCCCHHHHHHHHHHH--HHhcCCCCCchHHHHh--ChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHH
Confidence 467888899999888 5899998887765555 3444444444443221 1246779999999999999999
Q ss_pred HHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcc
Q 015534 141 AKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 219 (405)
Q Consensus 141 a~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~L 219 (405)
++.|+ +|+|+|+++ +++.|+++....+...+++++++|+++++++.++||+|++..+ +.|..++..++..+.++|
T Consensus 150 a~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v---LeHv~d~~~~L~~l~r~L 225 (322)
T PLN02396 150 ARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV---IEHVANPAEFCKSLSALT 225 (322)
T ss_pred HHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH---HHhcCCHHHHHHHHHHHc
Confidence 99865 999999999 9999999877666556799999999998776689999999544 445567789999999999
Q ss_pred cCCcEEEecC
Q 015534 220 VDDGIVLPDK 229 (405)
Q Consensus 220 kpgG~lip~~ 229 (405)
||||.++...
T Consensus 226 kPGG~liist 235 (322)
T PLN02396 226 IPNGATVLST 235 (322)
T ss_pred CCCcEEEEEE
Confidence 9999998654
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.76 E-value=1.1e-17 Score=135.42 Aligned_cols=106 Identities=28% Similarity=0.348 Sum_probs=88.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc-ccccCCCCceeEEEEcc-
Q 015534 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIELPVTKVDIIISEW- 197 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~Iv~~~- 197 (405)
|+.+|||||||+|.++..+++ .+..+|+|+|+|+ |++.|++++...+..++++++++|+ ...... ++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 578999999999999999999 4566999999999 9999999998888889999999999 444443 7899999976
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
....+.+......+++.+.+.|+|||+++..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 2332333356778899999999999999864
No 11
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.75 E-value=1.8e-18 Score=154.06 Aligned_cols=152 Identities=18% Similarity=0.177 Sum_probs=119.3
Q ss_pred ccCCCCCcCCCCCCCccccccccccCchhhhHHhhcCHHhHHHHHHHHHhccC-CCC------CCEEEEEcCCCcHHHHH
Q 015534 67 MCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKF-LFK------DKVVLDVGAGTGILSLF 139 (405)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~-~~~------~~~VLDiGcG~G~l~~~ 139 (405)
+..++..|+.+|..++ ..||+.-+.+.....| +..|.....+-+..... ..| |++|||+|||+|+++..
T Consensus 31 ~~si~~~eV~~f~~la--~~wwd~~g~~~~Lh~m--n~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSep 106 (282)
T KOG1270|consen 31 TTSIDVDEVKKFQALA--FTWWDEEGVRHPLHSM--NQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEP 106 (282)
T ss_pred eecccHHHHHHHHHhc--ccccccccchhhhhhc--cchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchh
Confidence 3345556788888887 8899998877665556 55666666666665542 233 47899999999999999
Q ss_pred HHHcCCCeEEEEechH-HHHHHHHHHHHcCCCC-----cEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHH
Q 015534 140 CAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-----VITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLY 213 (405)
Q Consensus 140 la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~ 213 (405)
||+.|+ .|+|+|+++ |++.|+++...+...+ ++++.+.+++.+. ++||+|+|..+ +.|..+++.++.
T Consensus 107 LArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsev---leHV~dp~~~l~ 179 (282)
T KOG1270|consen 107 LARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEV---LEHVKDPQEFLN 179 (282)
T ss_pred hHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHHH---HHHHhCHHHHHH
Confidence 999986 999999999 9999999965554433 3778888888775 56999999544 667789999999
Q ss_pred HHHhcccCCcEEEecC
Q 015534 214 ARDKWLVDDGIVLPDK 229 (405)
Q Consensus 214 ~~~~~LkpgG~lip~~ 229 (405)
.+.++|||||.++..+
T Consensus 180 ~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 180 CLSALLKPNGRLFITT 195 (282)
T ss_pred HHHHHhCCCCceEeee
Confidence 9999999999988654
No 12
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.73 E-value=1.2e-17 Score=152.29 Aligned_cols=106 Identities=24% Similarity=0.277 Sum_probs=80.1
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
....+|.+|||+|||||.++..+++. + ..+|+|+|+|+ |++.|+++....+.. +|+++++|++++++++++||+|+
T Consensus 43 ~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~ 121 (233)
T PF01209_consen 43 LGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVT 121 (233)
T ss_dssp HT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEE
T ss_pred cCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEE
Confidence 45678889999999999999999884 3 35999999999 999999999998875 79999999999999999999999
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+. +.+.+..+....++++.|+|||||+++.
T Consensus 122 ~~---fglrn~~d~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 122 CS---FGLRNFPDRERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp EE---S-GGG-SSHHHHHHHHHHHEEEEEEEEE
T ss_pred HH---hhHHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 84 4455557788999999999999999874
No 13
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.65 E-value=1.6e-15 Score=141.23 Aligned_cols=116 Identities=16% Similarity=0.096 Sum_probs=92.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHH--cCCCCcEEEEEccccccc
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEA--NGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~--~~~~~~i~~~~~d~~~~~ 184 (405)
+.+.+.+.....++.+|||||||+|.++..+++. | ..+|+|+|+|+ |++.|+++... .....+++++++|+++++
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP 140 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence 3333333345667889999999999999999884 4 35999999999 99999877542 222246999999999999
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+++++||+|++... +++..++..++.++.|+|||||.++..
T Consensus 141 ~~~~sfD~V~~~~~---l~~~~d~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 141 FDDCYFDAITMGYG---LRNVVDRLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred CCCCCEeEEEEecc---cccCCCHHHHHHHHHHHcCcCcEEEEE
Confidence 88889999998543 444467889999999999999998754
No 14
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.65 E-value=7.6e-16 Score=120.20 Aligned_cols=94 Identities=26% Similarity=0.394 Sum_probs=79.4
Q ss_pred EEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccCh
Q 015534 127 LDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFE 205 (405)
Q Consensus 127 LDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~ 205 (405)
||+|||+|..+..+++.+..+|+++|+++ +++.++++....+ +.++.+|++++++++++||+|++..+.+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCccccccccccccccceeec---
Confidence 89999999999999999667999999999 9999999876543 669999999999999999999997654444
Q ss_pred hhHHHHHHHHHhcccCCcEEEe
Q 015534 206 NMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 206 ~~~~~~l~~~~~~LkpgG~lip 227 (405)
.....+++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 7888999999999999999874
No 15
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.65 E-value=2.5e-15 Score=132.25 Aligned_cols=100 Identities=25% Similarity=0.293 Sum_probs=86.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
..++.+|||||||+|..++.+++ .+..+|+++|+++ |++.|+++++.+++++ ++++.+|+.++.. .++||+|+++.
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-CCCccEEEEcc
Confidence 34588999999999999999987 4567999999999 9999999999999865 9999999999876 57999999864
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+ ..++.++..+.++|+|||++++.
T Consensus 121 ~-------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 121 V-------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred c-------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 2 35678899999999999998853
No 16
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.64 E-value=2.6e-15 Score=134.01 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=88.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++.+|||+|||+|.++..+++.|. +|+|+|+|+ |++.|+++....++. +++++..|+.+++++ ++||+|++..+
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~I~~~~~ 104 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFD-GEYDFILSTVV 104 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcC-CCcCEEEEecc
Confidence 45678999999999999999999876 999999999 999999999988884 489999999887765 78999999765
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.+++ .......++..+.++|+|||.++
T Consensus 105 ~~~~-~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 105 LMFL-EAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred hhhC-CHHHHHHHHHHHHHHcCCCcEEE
Confidence 4443 44567899999999999999965
No 17
>PLN02244 tocopherol O-methyltransferase
Probab=99.64 E-value=2.6e-15 Score=145.06 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=91.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.++.+|||||||+|.++..+++....+|+|+|+|+ |++.|+++....++.++++++.+|+.++++++++||+|++...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~- 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES- 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc-
Confidence 57789999999999999999995344999999999 9999999999998888899999999999888889999999544
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.+..+...++.++.++|||||.++..
T Consensus 196 --~~h~~d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 196 --GEHMPDKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred --hhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 333356778999999999999998864
No 18
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.64 E-value=2.9e-15 Score=131.08 Aligned_cols=104 Identities=24% Similarity=0.346 Sum_probs=86.5
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
...++.++||||||.|..+++||+.|. .|+|+|.|+ .++.+++.+...+++ |+....|+.+..++ +.||+|++..
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~I~st~ 102 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDFIVSTV 102 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEEEEEES
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCEEEEEE
Confidence 345677999999999999999999998 999999999 999999999999985 99999999998876 7899999976
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+..++ ..+..+.++..+...++|||+++.
T Consensus 103 v~~fL-~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 103 VFMFL-QRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp SGGGS--GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred EeccC-CHHHHHHHHHHHHhhcCCcEEEEE
Confidence 66655 456778999999999999999774
No 19
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.64 E-value=2.1e-15 Score=129.03 Aligned_cols=104 Identities=31% Similarity=0.379 Sum_probs=88.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHH-Hc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCA-KA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIIS 195 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la-~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~ 195 (405)
..+.+|||+|||+|.++..++ +. +..+|+|+|+|+ |++.|++++...+++ +++|+++|+.+++ ++ ++||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEE
Confidence 357899999999999999999 43 356999999999 999999999999996 7999999999976 55 79999999
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
..+. .+......++..+.++|++||.++...
T Consensus 80 ~~~l---~~~~~~~~~l~~~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 80 NGVL---HHFPDPEKVLKNIIRLLKPGGILIISD 110 (152)
T ss_dssp ESTG---GGTSHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCch---hhccCHHHHHHHHHHHcCCCcEEEEEE
Confidence 7553 444677889999999999999998644
No 20
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.63 E-value=2.2e-15 Score=134.33 Aligned_cols=103 Identities=19% Similarity=0.178 Sum_probs=86.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
...++.+|||+|||+|.++..+++.|. +|+|+|+|+ |++.++++...+++. +.+...|+...+++ ++||+|++..
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~-~~fD~I~~~~ 102 (195)
T TIGR00477 27 KTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN-EDYDFIFSTV 102 (195)
T ss_pred ccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc-CCCCEEEEec
Confidence 344567999999999999999999876 999999999 999999999888874 78888888766655 6899999976
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+.+++ +......++..+.++|+|||+++
T Consensus 103 ~~~~~-~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 103 VFMFL-QAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred ccccC-CHHHHHHHHHHHHHHhCCCcEEE
Confidence 54433 34577889999999999999865
No 21
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.62 E-value=7.5e-15 Score=134.55 Aligned_cols=115 Identities=21% Similarity=0.248 Sum_probs=95.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (405)
.+.+.+.......++.+|||+|||+|.++..+++. + ..+|+|+|+++ +++.|++++...++ ++++++.+|+.++++
T Consensus 32 ~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~ 110 (231)
T TIGR02752 32 KWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPF 110 (231)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCC
Confidence 44445555566678899999999999999999884 3 45999999999 99999999988777 569999999998887
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.++||+|++... +.+......++..+.++|+|||+++.
T Consensus 111 ~~~~fD~V~~~~~---l~~~~~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 111 DDNSFDYVTIGFG---LRNVPDYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred CCCCccEEEEecc---cccCCCHHHHHHHHHHHcCcCeEEEE
Confidence 7789999998543 34445677899999999999999874
No 22
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.61 E-value=8.2e-15 Score=136.60 Aligned_cols=115 Identities=21% Similarity=0.270 Sum_probs=89.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
-.+.+.+...+.+|.+|||||||.|.+++.+++. |+ +|+|+.+|+ ..+.|++.+...|+++++++...|..+++
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--- 125 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--- 125 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---
Confidence 3445666678899999999999999999999996 76 999999999 99999999999999999999999998875
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.+||.|++-.+..++ +....+.++..+.++|||||+++.+.
T Consensus 126 ~~fD~IvSi~~~Ehv-g~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 126 GKFDRIVSIEMFEHV-GRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp -S-SEEEEESEGGGT-CGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCCCEEEEEechhhc-ChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 489999996554433 34678899999999999999998653
No 23
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.60 E-value=3.4e-15 Score=139.77 Aligned_cols=110 Identities=27% Similarity=0.386 Sum_probs=85.5
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (405)
+....++|... ..++.+|||+|||||+|++.+++.|+++|+|+|++| +++.|++++..|++.+++.+. ...+ .
T Consensus 148 T~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~--~ 221 (295)
T PF06325_consen 148 TRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED--L 221 (295)
T ss_dssp HHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC--T
T ss_pred HHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc--c
Confidence 44555566543 567889999999999999999999999999999999 999999999999999877663 2222 2
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..++||+|++|.+. ..+..++..+.++|+|||.+|.+
T Consensus 222 ~~~~~dlvvANI~~------~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 222 VEGKFDLVVANILA------DVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp CCS-EEEEEEES-H------HHHHHHHHHCHHHEEEEEEEEEE
T ss_pred ccccCCEEEECCCH------HHHHHHHHHHHHhhCCCCEEEEc
Confidence 23899999999763 34456777888999999999953
No 24
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=6.7e-15 Score=135.24 Aligned_cols=116 Identities=21% Similarity=0.211 Sum_probs=99.7
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
-.+.+.....+.+|.+|||||||-|.+++.+|+.-..+|+|+++|+ +.+.+++++...|+.++++++..|..++. +
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e 136 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---E 136 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---c
Confidence 3455666788999999999999999999999996345999999999 99999999999999989999999999886 5
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+||-|||-.|..++ +....+.++..+.++|+|||.++...
T Consensus 137 ~fDrIvSvgmfEhv-g~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 137 PFDRIVSVGMFEHV-GKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ccceeeehhhHHHh-CcccHHHHHHHHHhhcCCCceEEEEE
Confidence 59999996654444 33568899999999999999988543
No 25
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=5.1e-15 Score=137.14 Aligned_cols=113 Identities=25% Similarity=0.319 Sum_probs=88.4
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (405)
+....+++.+. ..++.+|||+|||+|.+++.+++.|+++|+|+|++| .++.|++++..|++...++....+......
T Consensus 149 T~lcL~~Le~~--~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~ 226 (300)
T COG2264 149 TSLCLEALEKL--LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE 226 (300)
T ss_pred HHHHHHHHHHh--hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc
Confidence 44455556543 458999999999999999999999999999999999 999999999999987533333333333322
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.++||+||+|.+. ..+..+...+.++|||||++|.+
T Consensus 227 -~~~~DvIVANILA------~vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 227 -NGPFDVIVANILA------EVLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred -cCcccEEEehhhH------HHHHHHHHHHHHHcCCCceEEEE
Confidence 3699999998753 34457788889999999999954
No 26
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.60 E-value=7.2e-15 Score=136.67 Aligned_cols=103 Identities=26% Similarity=0.256 Sum_probs=88.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~ 198 (405)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+ |++.|++++...++.++++++++|+.++. .+.++||+|++..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4567999999999999999999865 999999999 99999999999988778999999998874 44579999999655
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+++ ..+..++..+.++|||||+++.
T Consensus 122 l~~~---~~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 122 LEWV---ADPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred HHhh---CCHHHHHHHHHHHcCCCeEEEE
Confidence 3333 4567889999999999999874
No 27
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.59 E-value=1.5e-14 Score=127.09 Aligned_cols=99 Identities=21% Similarity=0.339 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
.++.+|||+|||+|.++..++..+ ..+|+|+|.|+ |++.++++++.+++. +++++++|+.++.. .++||+|+++.+
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~-~~~fD~I~s~~~ 118 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQH-EEQFDVITSRAL 118 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccc-cCCccEEEehhh
Confidence 357899999999999999988753 56899999999 999999999999885 59999999998743 479999998642
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..++.++..+.++|+|||.++..
T Consensus 119 -------~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 119 -------ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred -------hCHHHHHHHHHHhcCCCCEEEEE
Confidence 24566778889999999998853
No 28
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.59 E-value=2.2e-14 Score=127.31 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=99.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCC------CeEEEEechH-HHHHHHHHHHHcCCCCc--EEEEEc
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGA------AHVYAVECSQ-MANMAKQIVEANGFSNV--ITVLKG 178 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~------~~V~~vD~s~-~~~~a~~~~~~~~~~~~--i~~~~~ 178 (405)
.|.+.....+...++.+|||++||||-++..+.+ .+. .+|+.+|+|+ |++.++++..+.++... +.++.+
T Consensus 87 lWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~ 166 (296)
T KOG1540|consen 87 LWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEG 166 (296)
T ss_pred HHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeC
Confidence 3556666667778889999999999999999988 344 6999999999 99999999988777654 999999
Q ss_pred ccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 179 KIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 179 d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
|++++++++.+||+.++ .+.+.+-.++++.+++++|+|||||++.
T Consensus 167 dAE~LpFdd~s~D~yTi---afGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 167 DAEDLPFDDDSFDAYTI---AFGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred CcccCCCCCCcceeEEE---ecceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 99999999999999997 4556677788999999999999999876
No 29
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=99.58 E-value=1.1e-14 Score=122.99 Aligned_cols=135 Identities=26% Similarity=0.403 Sum_probs=117.2
Q ss_pred hhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcE
Q 015534 95 GIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (405)
Q Consensus 95 ~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (405)
.||.+++.|..|...|..+|.+.. ...+.|+|+|+|.+++.++++ +.+|+|+|.+| ..+.|.+++.-+|. +++
T Consensus 9 ~yh~~LL~D~eRlavF~~ai~~va----~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~ 82 (252)
T COG4076 9 SYHLDLLRDVERLAVFTSAIAEVA----EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNW 82 (252)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHHh----hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cce
Confidence 578889999999999999998653 368999999999999999998 88999999999 99999999888887 569
Q ss_pred EEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEcc
Q 015534 174 TVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIE 238 (405)
Q Consensus 174 ~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~ 238 (405)
+++.+|+.+..+ +..|+|+|++++..|..++..+ ++.++..+|+-++.+||+....-+.|+.
T Consensus 83 evv~gDA~~y~f--e~ADvvicEmlDTaLi~E~qVp-V~n~vleFLr~d~tiiPq~v~~~a~pv~ 144 (252)
T COG4076 83 EVVVGDARDYDF--ENADVVICEMLDTALIEEKQVP-VINAVLEFLRYDPTIIPQEVRIGANPVR 144 (252)
T ss_pred EEEecccccccc--cccceeHHHHhhHHhhcccccH-HHHHHHHHhhcCCccccHHHhhccCccc
Confidence 999999999988 6899999999888888777764 4555667999999999998776666654
No 30
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.58 E-value=2e-14 Score=136.23 Aligned_cols=114 Identities=16% Similarity=0.124 Sum_probs=89.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
.++.......++++|||||||+|.++..++..|+..|+|+|+|+ |+..++..-...+...++.+...++++++.. .+|
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~F 189 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAF 189 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCc
Confidence 33444455678899999999999999999998888999999999 9877644333222224688999999988754 689
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
|+|+|..+.+ |..++..++.++++.|+|||.++...
T Consensus 190 D~V~s~gvL~---H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 190 DTVFSMGVLY---HRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred CEEEEcchhh---ccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999966533 44677889999999999999998653
No 31
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.58 E-value=2.1e-14 Score=137.39 Aligned_cols=110 Identities=23% Similarity=0.210 Sum_probs=89.2
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015534 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (405)
Q Consensus 115 ~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (405)
.......++++|||||||+|.++..+++.|+..|+|+|+|+ ++..++......+...+++++.+|++++++ .++||+|
T Consensus 115 ~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V 193 (322)
T PRK15068 115 LPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTV 193 (322)
T ss_pred HHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEE
Confidence 33344567899999999999999999998888899999999 987665544333333569999999999987 5899999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|..+ +.|..++..++..+++.|+|||.++..
T Consensus 194 ~s~~v---l~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 194 FSMGV---LYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred EECCh---hhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99654 344467788999999999999999875
No 32
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.57 E-value=1.6e-14 Score=136.67 Aligned_cols=101 Identities=25% Similarity=0.281 Sum_probs=86.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.++.+|||+|||+|..+..+++.|. +|+|+|+|+ +++.+++++..+++ ++++...|+....++ ++||+|++..+.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~-~~fD~I~~~~vl 194 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQ-EEYDFILSTVVL 194 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccccc-CCccEEEEcchh
Confidence 3456999999999999999999875 999999999 99999999998887 489999998876664 899999998765
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+++ +....+.++..+.++|+|||+++
T Consensus 195 ~~l-~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 195 MFL-NRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred hhC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 544 34577899999999999999965
No 33
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.56 E-value=6.9e-14 Score=121.90 Aligned_cols=112 Identities=27% Similarity=0.317 Sum_probs=88.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCC-eEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA-HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~-~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (405)
.+.+.+... ++.+|||+|||+|.+++.+++.+.. +|+++|+++ +++.|++++..+++.+ ++++..|..+...
T Consensus 22 lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~- 95 (170)
T PF05175_consen 22 LLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP- 95 (170)
T ss_dssp HHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC-
T ss_pred HHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc-
Confidence 444444432 6789999999999999999997554 799999999 9999999999999977 9999999876543
Q ss_pred CCceeEEEEccccccccC--hhhHHHHHHHHHhcccCCcEEE
Q 015534 187 VTKVDIIISEWMGYFLLF--ENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~--~~~~~~~l~~~~~~LkpgG~li 226 (405)
.++||+|++++..+.... ......++....++|+|||.++
T Consensus 96 ~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 96 DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 489999999975322211 1246788999999999999986
No 34
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.55 E-value=3.1e-14 Score=131.72 Aligned_cols=107 Identities=17% Similarity=0.280 Sum_probs=89.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc---CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~---g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
..++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++++...+...+++++++|+.+++++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 357789999999999999888872 346999999999 9999999999888877899999999988654 5999998
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
....+++. ......++..+.+.|||||.++...
T Consensus 132 ~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 132 NFTLQFLE-PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 76545443 3456789999999999999998754
No 35
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.55 E-value=3.9e-14 Score=132.08 Aligned_cols=112 Identities=27% Similarity=0.293 Sum_probs=89.6
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+.......++.+|||||||+|..+..+++....+|+|+|+|+ |++.|+++... .++++++.+|+.+.++++++||+
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~ 120 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDM 120 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEE
Confidence 334456778899999999999999998874334999999999 99999987654 25699999999988887789999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
|++.....++ .......+++.+.++|||||.++...
T Consensus 121 V~s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 121 IYSRDAILHL-SYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred EEEhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9985322222 22367899999999999999998654
No 36
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.55 E-value=1.4e-14 Score=114.91 Aligned_cols=95 Identities=23% Similarity=0.370 Sum_probs=78.3
Q ss_pred EEEEcCCCcHHHHHHHHc---C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc-ccc
Q 015534 126 VLDVGAGTGILSLFCAKA---G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE-WMG 199 (405)
Q Consensus 126 VLDiGcG~G~l~~~la~~---g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~-~~~ 199 (405)
|||+|||+|..+..+++. | ..+++|+|+|+ |++.++++....+. +++++++|+.+++...++||+|++. .+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 799999999999999986 3 26999999999 99999999988766 5899999999988766899999994 323
Q ss_pred ccccChhhHHHHHHHHHhcccCCc
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDG 223 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG 223 (405)
.+ ........+++.+.++|+|||
T Consensus 79 ~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred CC-CCHHHHHHHHHHHHHHhCCCC
Confidence 33 566788999999999999998
No 37
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.54 E-value=3.4e-14 Score=115.76 Aligned_cols=105 Identities=25% Similarity=0.356 Sum_probs=86.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEcccc
Q 015534 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMG 199 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~~~ 199 (405)
|.+|||+|||+|.++..+++.+..+++|+|+++ .++.|+.++..+++.++++++++|+.+.. ++.++||+|++++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 568999999999999999998767999999999 99999999999999888999999999886 667999999998743
Q ss_pred ccccC-----hhhHHHHHHHHHhcccCCcEEEe
Q 015534 200 YFLLF-----ENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 200 ~~l~~-----~~~~~~~l~~~~~~LkpgG~lip 227 (405)
..... ......+++.+.++|+|||.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 21110 12346889999999999999874
No 38
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.53 E-value=3e-14 Score=123.23 Aligned_cols=106 Identities=19% Similarity=0.188 Sum_probs=84.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
....-.++||+|||.|.++..||.. ..+++++|+|+ .++.|++++... .+|+++++|+.+.. |.++||+||+.-
T Consensus 40 p~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~-P~~~FDLIV~SE 114 (201)
T PF05401_consen 40 PRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFW-PEGRFDLIVLSE 114 (201)
T ss_dssp TTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEEEES
T ss_pred CccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCC-CCCCeeEEEEeh
Confidence 3344468999999999999999998 56999999999 999999998753 45999999998875 459999999988
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
++|++.....+..++..+...|+|||.+|...
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 88999777788999999999999999999643
No 39
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.52 E-value=1.1e-13 Score=130.01 Aligned_cols=107 Identities=23% Similarity=0.318 Sum_probs=90.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHH-cCC-CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAK-AGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~-~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
...++.+|||||||+|..+..+++ .|. .+|+++|+++ |++.|+++....++. +++++.+|++++++++++||+|++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEEE
Confidence 456889999999999998887777 343 4899999999 999999999888874 699999999998887789999999
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.+.+ +..+...++..+.++|||||+++...
T Consensus 153 ~~v~~---~~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 153 NCVIN---LSPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cCccc---CCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 76533 33566788999999999999998643
No 40
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.52 E-value=1.7e-13 Score=129.57 Aligned_cols=101 Identities=27% Similarity=0.376 Sum_probs=85.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++.+|||+|||+|.++..+++.|+.+|+|+|+++ +++.|++++..+++.+++.+...+... ...++||+|+++.+
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~~~fDlVvan~~ 234 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIEGKADVIVANIL 234 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccCCCceEEEEecC
Confidence 347789999999999999999999888999999999 999999999999988778888776433 22478999999764
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
. ..+..++..+.++|||||.++.+
T Consensus 235 ~------~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 235 A------EVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred H------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 2 34567888899999999999854
No 41
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.52 E-value=6e-14 Score=130.24 Aligned_cols=106 Identities=25% Similarity=0.270 Sum_probs=85.7
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (405)
.+.+.....++.+|||+|||+|.++..+++.|. +|+++|+|+ |++.|+++.. .+.++.+|++.+++++++||
T Consensus 33 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD 105 (251)
T PRK10258 33 ALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFD 105 (251)
T ss_pred HHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEE
Confidence 333334444678999999999999999988764 999999999 9999987642 24688999999888778999
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|+++.. +.+..++..++.++.++|+|||.+++.
T Consensus 106 ~V~s~~~---l~~~~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 106 LAWSNLA---VQWCGNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred EEEECch---hhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 9999754 333457788999999999999999854
No 42
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.52 E-value=2.8e-13 Score=111.29 Aligned_cols=105 Identities=23% Similarity=0.303 Sum_probs=84.9
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Iv 194 (405)
....++.+|||+|||+|.++..+++. +..+|+++|+|+ +++.+++++...++. +++++.+|+... ....++||+|+
T Consensus 15 ~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 15 LRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCEEE
Confidence 44556789999999999999999985 457999999999 999999999988875 589999987653 22236899999
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+... ......+++.+.++|+|||.++...
T Consensus 94 ~~~~------~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 94 IGGS------GGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ECCc------chhHHHHHHHHHHHcCCCCEEEEEe
Confidence 8532 1345688999999999999998653
No 43
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.52 E-value=8e-14 Score=125.94 Aligned_cols=107 Identities=30% Similarity=0.365 Sum_probs=90.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--CCCceeEEEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDIIIS 195 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~Iv~ 195 (405)
.....+|||+|||+|.+++++|++ ...+++|||+.+ +++.|+++++.|++.++|+++++|+.++.. ...+||+|+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 344789999999999999999996 557999999999 999999999999999999999999998863 3357999999
Q ss_pred ccccccccChh----------------hHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFLLFEN----------------MLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~~~----------------~~~~~l~~~~~~LkpgG~lip 227 (405)
|+. |+-.+.. .++.++....++|||||.+..
T Consensus 122 NPP-yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 122 NPP-YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred CCC-CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 985 3332221 357888899999999999863
No 44
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.50 E-value=9.5e-14 Score=127.43 Aligned_cols=146 Identities=23% Similarity=0.222 Sum_probs=109.6
Q ss_pred CCCCCcCCCCCCCccccccccccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeE
Q 015534 69 DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHV 148 (405)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V 148 (405)
++.++++.+++..+ +.||+.++..+.+..+.. .....+.......++.+|||||||+|.++..+++.+. +|
T Consensus 3 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v 73 (233)
T PRK05134 3 NVDPAEIAKFSALA--ARWWDPNGEFKPLHRINP------LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DV 73 (233)
T ss_pred cccHHHHHHHHHHH--HHHhccCCCcHHHHHhhH------HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eE
Confidence 45555666666666 778888877665554422 2223333334456788999999999999999998865 89
Q ss_pred EEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 149 YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+++|+++ +++.|++++...+. .++++..++.++. ...++||+|++..+ +.+......++..+.++|+|||.++
T Consensus 74 ~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~ 148 (233)
T PRK05134 74 TGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEM---LEHVPDPASFVRACAKLVKPGGLVF 148 (233)
T ss_pred EEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhH---hhccCCHHHHHHHHHHHcCCCcEEE
Confidence 9999999 99999999887765 4788888888765 23479999998543 3344567788999999999999988
Q ss_pred ec
Q 015534 227 PD 228 (405)
Q Consensus 227 p~ 228 (405)
..
T Consensus 149 v~ 150 (233)
T PRK05134 149 FS 150 (233)
T ss_pred EE
Confidence 64
No 45
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.50 E-value=1.7e-13 Score=127.56 Aligned_cols=102 Identities=18% Similarity=0.235 Sum_probs=83.1
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 115 ~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
.......++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++. +++++.+|++++. +.++||+
T Consensus 22 l~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~~~fD~ 92 (255)
T PRK14103 22 LARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-PKPDTDV 92 (255)
T ss_pred HHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-CCCCceE
Confidence 33355567889999999999999999985 345999999999 99999752 3789999998874 4579999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|++..+.+++ .+...++..+.++|||||.++..
T Consensus 93 v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 93 VVSNAALQWV---PEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EEEehhhhhC---CCHHHHHHHHHHhCCCCcEEEEE
Confidence 9997654433 56788999999999999998864
No 46
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.50 E-value=1.2e-13 Score=125.89 Aligned_cols=102 Identities=18% Similarity=0.171 Sum_probs=86.8
Q ss_pred CEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccc
Q 015534 124 KVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (405)
++|||||||+|.++..+++. +..+|+|+|+|+ +++.|++++...++.++++++..|+...+.+ ++||+|++..+.+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~- 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH- 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHH-
Confidence 37999999999999999885 346999999999 9999999999999988999999999776655 6899999854433
Q ss_pred ccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 202 LLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+......++..+.++|+|||.++...
T Consensus 79 --~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 79 --HIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred --hCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 33567899999999999999998653
No 47
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.50 E-value=3.9e-13 Score=130.26 Aligned_cols=109 Identities=14% Similarity=0.046 Sum_probs=85.5
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCC--CcEEEEEcccccccCCCCceeEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFS--NVITVLKGKIEEIELPVTKVDII 193 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~D~I 193 (405)
.....+.+|||+|||+|.+++.+++. +..+|+++|.|+ +++.|+++++.++.. .+++++..|..... +..+||+|
T Consensus 224 lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~-~~~~fDlI 302 (378)
T PRK15001 224 LPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV-EPFRFNAV 302 (378)
T ss_pred CCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC-CCCCEEEE
Confidence 33344569999999999999999985 456999999999 999999999988753 36899999886542 33689999
Q ss_pred EEcccccccc--ChhhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLL--FENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|++..+... .......++..+.++|+|||.++.
T Consensus 303 lsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~i 338 (378)
T PRK15001 303 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 338 (378)
T ss_pred EECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEE
Confidence 9997543221 223456788899999999999874
No 48
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.49 E-value=2.5e-13 Score=125.15 Aligned_cols=106 Identities=19% Similarity=0.254 Sum_probs=88.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc---CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~---g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
.++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++++...+...+++++++|+.+++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 46789999999999999999884 346899999999 9999999998776656799999999988764 58999986
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
...+++ .......++..+.+.|+|||.++...
T Consensus 130 ~~l~~~-~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 130 FTLQFL-PPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred cchhhC-CHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 554443 23456789999999999999998764
No 49
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.49 E-value=4.1e-13 Score=120.66 Aligned_cols=106 Identities=26% Similarity=0.300 Sum_probs=83.7
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
.+.+.....++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++..+++.++++++.+|..+......+
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAP 142 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCC
Confidence 3444445678889999999999999999884 2 35999999999 9999999999999877799999999875444478
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
||+|++..... .+...+.+.|+|||+++.
T Consensus 143 fD~Ii~~~~~~---------~~~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 143 FDAIIVTAAAS---------TIPSALVRQLKDGGVLVI 171 (205)
T ss_pred ccEEEEccCcc---------hhhHHHHHhcCcCcEEEE
Confidence 99999864311 122456688999999864
No 50
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.49 E-value=2.8e-13 Score=137.29 Aligned_cols=107 Identities=24% Similarity=0.240 Sum_probs=88.7
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
....++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++.. +...+++++.+|+...++++++||+|+|.
T Consensus 262 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~I~s~ 339 (475)
T PLN02336 262 LDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDVIYSR 339 (475)
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEEEEEC
Confidence 34567889999999999999999885344999999999 9999998765 34457999999999888777899999996
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.+ +.+..+...++..+.++|||||.++...
T Consensus 340 ~~---l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 340 DT---ILHIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred Cc---ccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 44 3344677899999999999999998654
No 51
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.48 E-value=3.2e-13 Score=125.90 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=85.0
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (405)
+.......++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|+++. .+++++.+|+..+.. .++||
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~-~~~fD 95 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP-PQALD 95 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC-CCCcc
Confidence 344455677889999999999999999984 456999999999 999998764 348899999987754 37999
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|+++...+++ .+...++..+.++|||||.++..
T Consensus 96 ~v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 96 LIFANASLQWL---PDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEEccChhhC---CCHHHHHHHHHHhcCCCcEEEEE
Confidence 99997653333 46678999999999999998864
No 52
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.47 E-value=3.1e-13 Score=129.06 Aligned_cols=100 Identities=22% Similarity=0.200 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
.++.+|||||||+|.++..+++ .+..+|+++|.|+ |++.|+++... .+++++.+|+++++++.++||+|++..+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~ 187 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcCh
Confidence 4678999999999999988887 4556999999999 99999987643 3488999999998887789999998644
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.+..+...+++++.++|+|||.++.
T Consensus 188 ---L~~~~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 188 ---IEYWPDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred ---hhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 33334567889999999999999874
No 53
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.47 E-value=3.3e-13 Score=120.94 Aligned_cols=106 Identities=19% Similarity=0.211 Sum_probs=84.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc-cccc--CCCCceeEEEEc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIE--LPVTKVDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~~D~Iv~~ 196 (405)
++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|++++..+++ .+++++++|+ +.++ ++.++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5679999999999999999884 456899999999 99999999998887 4599999999 7665 556889999985
Q ss_pred ccccccc--Ch---hhHHHHHHHHHhcccCCcEEEec
Q 015534 197 WMGYFLL--FE---NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~~~l~--~~---~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
....... +. .....++..+.++|||||.++..
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 4221110 00 12467899999999999998853
No 54
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.47 E-value=5.1e-13 Score=123.75 Aligned_cols=95 Identities=31% Similarity=0.449 Sum_probs=78.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++.+|||+|||+|.+++.+++.|+.+|+|+|+|+ +++.|++++..+++.+++.+..++ .+||+|+++..
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vvani~ 188 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIVANIL 188 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEEEcCc
Confidence 357889999999999999999988887899999999 999999999999875555544332 27999999753
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
. ..+..++..+.++|||||.++.+
T Consensus 189 ~------~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 189 A------NPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred H------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 34567788899999999999864
No 55
>PRK06922 hypothetical protein; Provisional
Probab=99.46 E-value=5.2e-13 Score=135.10 Aligned_cols=108 Identities=19% Similarity=0.315 Sum_probs=87.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIIS 195 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~ 195 (405)
..++.+|||||||+|.++..+++ .+..+|+|+|+|+ |++.|+++....+ .++.++++|+.+++ +++++||+|++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEE
Confidence 44688999999999999888887 4556999999999 9999998876655 35889999998876 56689999998
Q ss_pred cccccccc----------ChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 196 EWMGYFLL----------FENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~----------~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.+.+.+. ....+..+++.+.++|||||.++...
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 75433221 12466789999999999999998643
No 56
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.45 E-value=9.6e-13 Score=123.95 Aligned_cols=106 Identities=26% Similarity=0.417 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|++++..+++.++++++.+|+.+. ++.++||+|++++.
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPP 198 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCC
Confidence 34579999999999999999985 345999999999 9999999999999877899999998653 34468999999863
Q ss_pred cccc-----------cCh------------hhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFL-----------LFE------------NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l-----------~~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.- .++ .....++..+.++|+|||+++..
T Consensus 199 -y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 199 -YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred -CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 211 111 12356788889999999998854
No 57
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.45 E-value=1.7e-12 Score=115.07 Aligned_cols=101 Identities=27% Similarity=0.264 Sum_probs=82.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
....++.+|||||||+|.++..+++.+ ..+|+++|+++ +++.|++++..+++. +++++.+|... .++ ++||+|++
T Consensus 27 l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~~-~~~D~v~~ 103 (187)
T PRK08287 27 LELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-ELP-GKADAIFI 103 (187)
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hcC-cCCCEEEE
Confidence 445678899999999999999999853 46999999999 999999999988874 59999998753 333 68999998
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
... . ..+..++..+.+.|+|||+++.
T Consensus 104 ~~~---~---~~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 104 GGS---G---GNLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred CCC---c---cCHHHHHHHHHHhcCCCeEEEE
Confidence 532 1 2356788888999999999885
No 58
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.45 E-value=1.2e-12 Score=117.04 Aligned_cols=105 Identities=27% Similarity=0.340 Sum_probs=86.6
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeE
Q 015534 117 NKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDI 192 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~ 192 (405)
.....++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|++++..+++.++++++.+|..+.. ...++||.
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~ 114 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDR 114 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCE
Confidence 356778899999999999999999873 3 46999999999 99999999999987677999999997642 22368999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|++.. +...+..++..+.++|+|||+++.
T Consensus 115 V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 115 IFIGG------GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred EEECC------CcccHHHHHHHHHHHcCCCcEEEE
Confidence 99843 124567889999999999999885
No 59
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.45 E-value=9.2e-13 Score=119.33 Aligned_cols=104 Identities=21% Similarity=0.205 Sum_probs=82.1
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
+.+.....++.+|||||||+|.++..+++.. ..+|+++|+++ +++.|++++..+++ ++++++.+|..+......+|
T Consensus 69 ~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~f 147 (215)
T TIGR00080 69 MTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPY 147 (215)
T ss_pred HHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCC
Confidence 3333456788999999999999999999853 24699999999 99999999999998 56999999997754444689
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|++.... ..+...+.+.|+|||+++.
T Consensus 148 D~Ii~~~~~---------~~~~~~~~~~L~~gG~lv~ 175 (215)
T TIGR00080 148 DRIYVTAAG---------PKIPEALIDQLKEGGILVM 175 (215)
T ss_pred CEEEEcCCc---------ccccHHHHHhcCcCcEEEE
Confidence 999985321 1223456688999999874
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.45 E-value=9.9e-13 Score=115.66 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.++.+|||+|||+|.++..+++.+. +|+++|+|+ +++.|++++..++. +++++.+|+.+.. .++||+|++++..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILFNPPY 92 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEECCCC
Confidence 4567899999999999999999876 999999999 99999999998876 4899999987653 3689999998643
Q ss_pred ccccC------------------hhhHHHHHHHHHhcccCCcEEEe
Q 015534 200 YFLLF------------------ENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 200 ~~l~~------------------~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.... ......++..+.++|+|||.++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 21111 11246788999999999999875
No 61
>PRK08317 hypothetical protein; Provisional
Probab=99.44 E-value=1.4e-12 Score=119.81 Aligned_cols=116 Identities=20% Similarity=0.240 Sum_probs=92.8
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (405)
.+.+.+.......++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|+++... ...+++++.+|+..+++
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCCC
Confidence 44444555566778899999999999999999884 346999999999 99999987332 23569999999988877
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.++||+|++..+ +.+..++..++..+.++|+|||.++...
T Consensus 84 ~~~~~D~v~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 84 PDGSFDAVRSDRV---LQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCCCceEEEEech---hhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 7789999998654 3333567889999999999999988654
No 62
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.44 E-value=1.2e-12 Score=120.17 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=90.2
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
....++.+|||+|||+|.++..+++.+ ..+|+++|+++ +++.+++++..+++..+++++.+|+.+.+.+.++||+|+
T Consensus 47 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~ 126 (239)
T PRK00216 47 LGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVT 126 (239)
T ss_pred hCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEE
Confidence 334567899999999999999999965 47999999999 999999998876666679999999998877668999999
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+... +.+...+..++..+.++|+|||.++.
T Consensus 127 ~~~~---l~~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 127 IAFG---LRNVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred Eecc---cccCCCHHHHHHHHHHhccCCcEEEE
Confidence 8433 44446778899999999999999875
No 63
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.44 E-value=1.2e-12 Score=118.24 Aligned_cols=104 Identities=21% Similarity=0.205 Sum_probs=82.2
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
+.......++.+|||||||+|.++..+++. + ..+|+++|+++ +++.|++++...++ ++++++++|......+.++|
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~f 146 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPY 146 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCc
Confidence 333455678999999999999999999885 3 25999999999 99999999999887 46999999987765555789
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|++... . ..+...+.+.|||||+++.
T Consensus 147 D~I~~~~~---~------~~~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 147 DRIYVTAA---G------PDIPKPLIEQLKDGGIMVI 174 (212)
T ss_pred CEEEECCC---c------ccchHHHHHhhCCCcEEEE
Confidence 99998532 1 1222345678999999764
No 64
>PRK14967 putative methyltransferase; Provisional
Probab=99.44 E-value=1.8e-12 Score=118.18 Aligned_cols=105 Identities=26% Similarity=0.285 Sum_probs=85.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
...++.+|||+|||+|.++..+++.+..+|+++|+++ +++.|++++..+++ +++++.+|+.+. ++.++||+|++++
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~~fD~Vi~np 109 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFRPFDVVVSNP 109 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCCCeeEEEECC
Confidence 3467789999999999999999998777999999999 99999999988876 488999998764 3457899999986
Q ss_pred ccccccCh-------------------hhHHHHHHHHHhcccCCcEEEe
Q 015534 198 MGYFLLFE-------------------NMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l~~~-------------------~~~~~~l~~~~~~LkpgG~lip 227 (405)
. +....+ ..+..++..+.++|||||+++.
T Consensus 110 P-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 110 P-YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred C-CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3 222111 1246678888999999999884
No 65
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.44 E-value=2.4e-14 Score=113.20 Aligned_cols=95 Identities=24% Similarity=0.298 Sum_probs=61.6
Q ss_pred EEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-C-CCCceeEEEEccccccc
Q 015534 127 LDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-L-PVTKVDIIISEWMGYFL 202 (405)
Q Consensus 127 LDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~-~~~~~D~Iv~~~~~~~l 202 (405)
||||||+|.++..+++. +..+++|+|+|+ |++.|++++...+... ...+..+..+.. . ..++||+|++..+.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999999885 556999999999 9999999998877532 334443333322 1 12599999996554444
Q ss_pred cChhhHHHHHHHHHhcccCCcEE
Q 015534 203 LFENMLNTVLYARDKWLVDDGIV 225 (405)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~l 225 (405)
.++..+++.+.++|+|||++
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 78889999999999999986
No 66
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.43 E-value=3.7e-13 Score=115.76 Aligned_cols=95 Identities=24% Similarity=0.220 Sum_probs=75.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++.+|||||||+|.++..+++.|. +|+|+|+++ +++. ..+.....+......+.++||+|+|..+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 57788999999999999999999988 999999999 8887 1133333333344445689999999655
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.+ +..++..++..+.++|||||.++...
T Consensus 88 l~---~~~d~~~~l~~l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 88 LE---HLPDPEEFLKELSRLLKPGGYLVISD 115 (161)
T ss_dssp GG---GSSHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred Hh---hcccHHHHHHHHHHhcCCCCEEEEEE
Confidence 44 44678999999999999999998643
No 67
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.43 E-value=1.4e-12 Score=123.89 Aligned_cols=103 Identities=26% Similarity=0.468 Sum_probs=83.4
Q ss_pred CEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccc
Q 015534 124 KVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (405)
.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|++++..+++.++++++++|+.+. ++.++||+|++++. +.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPP-yi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPP-YV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCC-CC
Confidence 68999999999999999984 456999999999 9999999999999877899999998653 33368999999863 21
Q ss_pred c-----------cCh------------hhHHHHHHHHHhcccCCcEEEec
Q 015534 202 L-----------LFE------------NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 202 l-----------~~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
- .++ .....++..+.++|+|||.++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 011 22357788889999999998854
No 68
>PRK05785 hypothetical protein; Provisional
Probab=99.43 E-value=9.9e-13 Score=119.79 Aligned_cols=90 Identities=23% Similarity=0.260 Sum_probs=76.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (405)
++.+|||||||||.++..+++....+|+|+|+|+ |++.|++. ..++++|++++++++++||+|++...
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~-- 119 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFA-- 119 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecCh--
Confidence 4679999999999999999987334999999999 99998863 23578999999998899999999543
Q ss_pred cccChhhHHHHHHHHHhcccCCc
Q 015534 201 FLLFENMLNTVLYARDKWLVDDG 223 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG 223 (405)
+.+..+++.++.++.|+|||.+
T Consensus 120 -l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 120 -LHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -hhccCCHHHHHHHHHHHhcCce
Confidence 5555788899999999999954
No 69
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.42 E-value=2.1e-12 Score=117.43 Aligned_cols=112 Identities=23% Similarity=0.257 Sum_probs=89.6
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC--CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (405)
+...+.......++.+|||+|||+|.++..+++.+. .+++++|+++ +++.++++.. ...+++++.+|+.+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~ 103 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFE 103 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCC
Confidence 333333334445788999999999999999998654 4999999999 9999998875 335689999999988776
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.++||+|++... +.+...+..+++.+.++|+|||+++.
T Consensus 104 ~~~~D~i~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 104 DNSFDAVTIAFG---LRNVTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred CCcEEEEEEeee---eCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 678999998543 44556778899999999999999885
No 70
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.42 E-value=9.8e-13 Score=121.07 Aligned_cols=112 Identities=20% Similarity=0.151 Sum_probs=86.3
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+........|++|||||||.|..+..++..|++.|+|+|.++ .....+..-.-.|....+.++..-+++++. .+.||+
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDt 185 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDT 185 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCE
Confidence 343444678999999999999999999999999999999999 665544433333433445555567788876 589999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
|+|-.+.| |..++-..+..++..|+|||.+|.++
T Consensus 186 VF~MGVLY---Hrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 186 VFSMGVLY---HRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred EEEeeehh---ccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 99966644 44677788999999999999988654
No 71
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.42 E-value=2.9e-12 Score=116.75 Aligned_cols=137 Identities=23% Similarity=0.264 Sum_probs=107.0
Q ss_pred cccccccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHH
Q 015534 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQI 163 (405)
Q Consensus 85 ~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~ 163 (405)
..||+.++.++.+..+ +..+...+.+.+........+.+|||+|||+|.++..+++.+. +|+++|+++ +++.++++
T Consensus 10 ~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~ 86 (224)
T TIGR01983 10 HEWWDPNGKFKPLHKM--NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLH 86 (224)
T ss_pred HHhcCCCCcHHHHHHh--hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHH
Confidence 5678888777766655 5666666666666442234578999999999999999988765 799999999 99999999
Q ss_pred HHHcCCCCcEEEEEcccccccCC-CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 164 VEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 164 ~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+...+.. ++++...|+.++... .++||+|++..+ +.+...+..++..+.++|+|||.++..
T Consensus 87 ~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 87 AKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEV---LEHVPDPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred HHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhH---HHhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 8887752 589999998877643 378999998543 334467778999999999999998754
No 72
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.42 E-value=9.1e-13 Score=113.42 Aligned_cols=100 Identities=18% Similarity=0.166 Sum_probs=84.1
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEE-EEEccccccc-CCCCceeEEEEccccc
Q 015534 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVIT-VLKGKIEEIE-LPVTKVDIIISEWMGY 200 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~~D~Iv~~~~~~ 200 (405)
..|||||||||..-.+.--.+..+|+++|+++ |-++|.+.++++... +++ |++++.++++ ++++++|+||+..+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l~~l~d~s~DtVV~Tlv-- 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENLPQLADGSYDTVVCTLV-- 154 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcCcccccCCeeeEEEEEE--
Confidence 46899999999775555444566999999999 999999999888554 466 9999999998 77899999999654
Q ss_pred cccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+....++...+.++.++|+|||++++
T Consensus 155 -LCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 155 -LCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred -EeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 55667888999999999999999985
No 73
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.41 E-value=3.7e-12 Score=109.40 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=91.9
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
.....+.+.++.+++|||||||.++..++.. +..+|||+|.++ +++..++|+++.++ ++++++.+++.+......++
T Consensus 25 l~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 25 LTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCCCCC
Confidence 3445577889999999999999999999974 467999999999 99999999999997 56999999998875443479
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
|.|+... ...++.+++.+...|||||+++.+.
T Consensus 104 daiFIGG-------g~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 104 DAIFIGG-------GGNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CEEEECC-------CCCHHHHHHHHHHHcCcCCeEEEEe
Confidence 9999632 1577889999999999999999654
No 74
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.40 E-value=2.7e-12 Score=123.80 Aligned_cols=115 Identities=21% Similarity=0.222 Sum_probs=93.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
+..++.......++.+|||+|||+|.++..++..|. +|+|+|+++ |+..|++++...++.+ ++++.+|+.+++++.+
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccC
Confidence 344444445567889999999999999988888755 999999999 9999999999999876 8999999999887668
Q ss_pred ceeEEEEccccccc----c---ChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGYFL----L---FENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l----~---~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+||+|++++. +.. . .......++..+.++|+|||+++.
T Consensus 248 ~~D~Iv~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 248 SVDAIATDPP-YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred CCCEEEECCC-CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 9999999863 221 0 113357889999999999999874
No 75
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.40 E-value=4e-12 Score=115.55 Aligned_cols=103 Identities=25% Similarity=0.250 Sum_probs=84.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++.+|||+|||+|.++..+++.+. +|+|+|+|+ |++.|++++...+..+++++.++|+..++ ++||+|++..+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 45688999999999999999998855 999999999 99999999988877667999999998764 78999998543
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+++ ....+..++..+.+++++++.+..
T Consensus 129 l~~~-~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 129 LIHY-PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred HHhC-CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2222 234567788888888887766654
No 76
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.39 E-value=2.5e-12 Score=114.55 Aligned_cols=106 Identities=17% Similarity=0.219 Sum_probs=83.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeEEEEc
Q 015534 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~Iv~~ 196 (405)
...+|||||||+|.++..+++ .+..+|+|+|+++ +++.|++++...++. +++++++|+.++. ++.+.+|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 456899999999999999988 4556999999999 999999999998885 6999999998754 444689999986
Q ss_pred ccccccc--C---hhhHHHHHHHHHhcccCCcEEEec
Q 015534 197 WMGYFLL--F---ENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~~~l~--~---~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
....... + .-..+.++..+.++|||||.++..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 4322111 0 011257889999999999998753
No 77
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.39 E-value=4.5e-12 Score=119.67 Aligned_cols=124 Identities=24% Similarity=0.307 Sum_probs=92.0
Q ss_pred CHHhHHHHHHHHHhcc-CCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc
Q 015534 103 DVVRTKSYQNVIYQNK-FLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK 179 (405)
Q Consensus 103 d~~r~~~~~~~i~~~~-~~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d 179 (405)
.+..++.+...+.... ...++.+|||+|||+|.+++.+++.. ..+|+|+|+|+ +++.|++++..+++.++++++.+|
T Consensus 94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d 173 (284)
T TIGR00536 94 PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSN 173 (284)
T ss_pred CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 4445555555544322 12233699999999999999999853 46999999999 999999999999987779999999
Q ss_pred cccccCCCCceeEEEEcccccc-----------ccCh------------hhHHHHHHHHHhcccCCcEEEec
Q 015534 180 IEEIELPVTKVDIIISEWMGYF-----------LLFE------------NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 180 ~~~~~~~~~~~D~Iv~~~~~~~-----------l~~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.+. ++..+||+|++++. +. ..++ .....++..+.++|+|||+++..
T Consensus 174 ~~~~-~~~~~fDlIvsNPP-yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 174 LFEP-LAGQKIDIIVSNPP-YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred hhcc-CcCCCccEEEECCC-CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 8764 33348999999752 21 1111 13567888889999999998754
No 78
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.39 E-value=2.4e-12 Score=120.01 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=82.5
Q ss_pred CCCCCEEEEEcCCCcH----HHHHHHHcC------CCeEEEEechH-HHHHHHHHHH----HcC----------------
Q 015534 120 LFKDKVVLDVGAGTGI----LSLFCAKAG------AAHVYAVECSQ-MANMAKQIVE----ANG---------------- 168 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~----l~~~la~~g------~~~V~~vD~s~-~~~~a~~~~~----~~~---------------- 168 (405)
..++.+|||+|||+|. +++.+++.+ ..+|+|+|+|+ |++.|++.+- ..+
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456799999999995 566676642 24899999999 9999997531 001
Q ss_pred ------CCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 169 ------FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 169 ------~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.++|+|.+.|+.+.+.+.++||+|+|..+..++ .......++..+++.|+|||+++...
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf-~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF-DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC-CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1246899999999887766899999996544433 33466789999999999999998643
No 79
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.39 E-value=3.1e-12 Score=125.24 Aligned_cols=109 Identities=22% Similarity=0.235 Sum_probs=86.4
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
+.+.......++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++.. ++ .+++...|..++ .++|
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---~~~f 229 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQF 229 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---CCCC
Confidence 34444456778999999999999999999985334999999999 9999999874 33 388888888765 2789
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+|++..+..++ +...++.++..+.++|||||.++..
T Consensus 230 D~Ivs~~~~ehv-g~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 230 DRIVSVGMFEHV-GPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred CEEEEeCchhhC-ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999986553333 2345678999999999999998864
No 80
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.39 E-value=6.1e-12 Score=113.28 Aligned_cols=102 Identities=19% Similarity=0.088 Sum_probs=80.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCC--------------CCcEEEEEcccccccC
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF--------------SNVITVLKGKIEEIEL 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~~~ 185 (405)
.++.+|||+|||.|..+..+|+.|. +|+|+|+|+ +++.|.+. +++ ..+|+++++|+.++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 4667999999999999999999988 999999999 99976432 221 2358999999988764
Q ss_pred C-CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 186 P-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 186 ~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
. .++||.|+...+..++ .......++..+.++|||||.++.
T Consensus 109 ~~~~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred ccCCCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 2 3679999975433333 456667899999999999998664
No 81
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.38 E-value=5.2e-12 Score=121.63 Aligned_cols=103 Identities=21% Similarity=0.206 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
....+|||+|||+|.++..+++. +..+|+++|+|+ +++.|++++..+++. .+++..|+... . .++||+|++++.
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~-~~~fDlIvsNPP 270 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-I-KGRFDMIISNPP 270 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-c-CCCccEEEECCC
Confidence 34458999999999999999985 346999999999 999999999999875 57778887553 2 378999999875
Q ss_pred ccccc--ChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLL--FENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~--~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+... .......++..+.+.|||||.++.
T Consensus 271 FH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 271 FHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred ccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 43221 124567899999999999999864
No 82
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.38 E-value=4.5e-12 Score=123.03 Aligned_cols=128 Identities=21% Similarity=0.251 Sum_probs=96.3
Q ss_pred hhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCc
Q 015534 95 GIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNV 172 (405)
Q Consensus 95 ~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~ 172 (405)
......+-++..++.+.+.+.... .++.+|||+|||+|.+++.+++ .+..+|+|+|+|+ +++.|++++..++. +
T Consensus 226 ~V~p~vLIPRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--r 301 (423)
T PRK14966 226 AVNPNVLIPRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--R 301 (423)
T ss_pred EeCCCccCCCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--c
Confidence 344445556777888888776543 3567999999999999999887 4567999999999 99999999998874 6
Q ss_pred EEEEEcccccccCC-CCceeEEEEccccccccC-----------h------------hhHHHHHHHHHhcccCCcEEEe
Q 015534 173 ITVLKGKIEEIELP-VTKVDIIISEWMGYFLLF-----------E------------NMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 173 i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~-----------~------------~~~~~~l~~~~~~LkpgG~lip 227 (405)
++++++|+.+...+ .++||+|+|++. +.... + .....++..+.+.|+|||.++.
T Consensus 302 V~fi~gDl~e~~l~~~~~FDLIVSNPP-YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 302 VEFAHGSWFDTDMPSEGKWDIIVSNPP-YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred EEEEEcchhccccccCCCccEEEECCC-CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99999998764332 358999999874 32111 0 1234677777889999999774
No 83
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.38 E-value=8e-12 Score=111.52 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=83.3
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCce
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKV 190 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 190 (405)
+.......++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++..+++. +++++.+|+.+. ......+
T Consensus 32 l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhhCCCCC
Confidence 444455668889999999999999999874 456999999999 999999999998884 599999998652 2111346
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|.++... ...+..++..+.++|+|||.++..
T Consensus 111 d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 111 DRVCIEG-------GRPIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred CEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEE
Confidence 7766531 134578899999999999998854
No 84
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.38 E-value=3.8e-12 Score=128.97 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=100.1
Q ss_pred hhhhHHhhcCHHhHHHHHHHHHhccC------------------------CCCCCEEEEEcCCCcHHHHHHHH-cCCCeE
Q 015534 94 FGIHEEMLKDVVRTKSYQNVIYQNKF------------------------LFKDKVVLDVGAGTGILSLFCAK-AGAAHV 148 (405)
Q Consensus 94 ~~~~~~~l~d~~r~~~~~~~i~~~~~------------------------~~~~~~VLDiGcG~G~l~~~la~-~g~~~V 148 (405)
+......|-+++.++.+.+.+..... ..++.+|||+|||+|.+++.+++ .+..+|
T Consensus 86 f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v 165 (506)
T PRK01544 86 FIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANV 165 (506)
T ss_pred EEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeE
Confidence 45555677788888888876653321 11346899999999999998887 456699
Q ss_pred EEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccccc------------Ch----------
Q 015534 149 YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL------------FE---------- 205 (405)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~------------~~---------- 205 (405)
+|+|+|+ +++.|++++..+++.++++++.+|+.+. ++.++||+|++++. |... ++
T Consensus 166 ~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPP-Yi~~~~~~~l~~~v~~~EP~~AL~gg~d 243 (506)
T PRK01544 166 IATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPP-YISHSEKSEMAIETINYEPSIALFAEED 243 (506)
T ss_pred EEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCC-CCCchhhhhcCchhhccCcHHHhcCCcc
Confidence 9999999 9999999999999878899999998653 33468999999763 2211 11
Q ss_pred --hhHHHHHHHHHhcccCCcEEEec
Q 015534 206 --NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 206 --~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.....++..+.++|+|||.++..
T Consensus 244 Gl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 244 GLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEE
Confidence 12345677888999999998864
No 85
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.37 E-value=3.9e-12 Score=124.67 Aligned_cols=108 Identities=21% Similarity=0.227 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC-CcEEEEEccccccc--C--CCCceeEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIE--L--PVTKVDIII 194 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~--~~~~~D~Iv 194 (405)
.++++|||+|||+|.+++.++..|+.+|+++|+|+ +++.|++++..|++. ++++++++|+.++. + ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 35789999999999999988887888999999999 999999999999986 47999999998763 1 236899999
Q ss_pred EccccccccCh-------hhHHHHHHHHHhcccCCcEEEecC
Q 015534 195 SEWMGYFLLFE-------NMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 195 ~~~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+++. ++.... .....++....++|+|||.++.++
T Consensus 299 lDPP-~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPP-KFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCC-CCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9975 333222 123455566789999999998654
No 86
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.37 E-value=5.5e-12 Score=115.85 Aligned_cols=100 Identities=27% Similarity=0.342 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..+.+|||||||+|.++..+++.+ ..+|+++|+++ ++..+++... .++.++.+|+.+.+++.++||+|++..+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~ 107 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLA 107 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence 345799999999999999999865 45799999999 9999887654 3588999999998877789999999655
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+++..++..++..+.++|+|||.++..
T Consensus 108 ---l~~~~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 108 ---LQWCDDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred ---hhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 334456788999999999999999864
No 87
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.36 E-value=3.3e-12 Score=107.76 Aligned_cols=105 Identities=28% Similarity=0.335 Sum_probs=84.2
Q ss_pred EEEEEcCCCcHHHHHHHHcCCC-eEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccc--
Q 015534 125 VVLDVGAGTGILSLFCAKAGAA-HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY-- 200 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~~g~~-~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~-- 200 (405)
+|||+|||.|.+...|++.|.. ..+|+|.|+ +++.|+..++++++++.|+|.+.|+.+-.+..++||+|.--....
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAi 149 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAI 149 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeee
Confidence 9999999999999999998764 499999999 999999999999999999999999988665558899888532111
Q ss_pred ccc---ChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 201 FLL---FENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 201 ~l~---~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.|. ..+.+...+..+.++|+|||++++..
T Consensus 150 sLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS 181 (227)
T KOG1271|consen 150 SLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS 181 (227)
T ss_pred ecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence 111 12233456788889999999998644
No 88
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.36 E-value=5.6e-12 Score=112.93 Aligned_cols=98 Identities=18% Similarity=0.239 Sum_probs=77.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
..++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|+++.. .++++++|+.+ ++++++||+|++..
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC-CCCCCCEEEEEECC
Confidence 346778999999999999999885 566999999999 9999987642 36788899887 66678999999977
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.+++ ....+..++.++.+++ ++.++.
T Consensus 114 vL~hl-~p~~~~~~l~el~r~~--~~~v~i 140 (204)
T TIGR03587 114 VLIHI-NPDNLPTAYRELYRCS--NRYILI 140 (204)
T ss_pred hhhhC-CHHHHHHHHHHHHhhc--CcEEEE
Confidence 65554 3456778888888887 345543
No 89
>PLN03075 nicotianamine synthase; Provisional
Probab=99.36 E-value=1.2e-11 Score=115.32 Aligned_cols=106 Identities=13% Similarity=0.150 Sum_probs=83.6
Q ss_pred CCCEEEEEcCCCcHH-HHHHHH--cCCCeEEEEechH-HHHHHHHHHHH-cCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 122 KDKVVLDVGAGTGIL-SLFCAK--AGAAHVYAVECSQ-MANMAKQIVEA-NGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l-~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
++++|+|||||.|.+ ++.+++ .+..+++++|+++ +++.|++.+.. .++.++++|..+|+.+.....+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 778999999997744 444443 3456899999999 99999999965 788889999999998864334789999996
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.+.+ . .......++..+.+.|+|||.++...
T Consensus 203 ALi~-~-dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 ALVG-M-DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccc-c-ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 3211 1 12567899999999999999998644
No 90
>PRK04266 fibrillarin; Provisional
Probab=99.35 E-value=1.3e-11 Score=111.98 Aligned_cols=102 Identities=23% Similarity=0.237 Sum_probs=79.2
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc----cCCCCce
Q 015534 117 NKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTKV 190 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~ 190 (405)
.....++.+|||+|||+|.++..+++. +..+|+|+|+++ |++.+.+++... .++.++.+|+... .++ ++|
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~-~~~ 142 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVV-EKV 142 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhcc-ccC
Confidence 356778999999999999999999994 345899999999 999887776653 3589999998752 223 579
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|+++.. .......++..+.++|||||.++.
T Consensus 143 D~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 143 DVIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred CEEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEE
Confidence 99997532 112234567899999999999885
No 91
>PRK14968 putative methyltransferase; Provisional
Probab=99.34 E-value=1.7e-11 Score=108.48 Aligned_cols=105 Identities=26% Similarity=0.307 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCc-EEEEEcccccccCCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
.++.+|||+|||+|.++..+++.+ .+|+++|.|+ +++.+++++..+++.++ +.++++|+.+.. ...+||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-RGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc-cccCceEEEECCC
Confidence 577899999999999999999985 5999999999 99999999998887644 889999987643 3358999999753
Q ss_pred ccc--------------c----cChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYF--------------L----LFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~--------------l----~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
... + .+...+..++..+.++|||||.+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 211 0 0122356788999999999998874
No 92
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.34 E-value=1.6e-11 Score=111.01 Aligned_cols=103 Identities=21% Similarity=0.191 Sum_probs=80.9
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+.......++.+|||+|||+|.++..+++.+ .+|+++|+++ +++.|++++...++.+ ++++.+|..+...+.++||+
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~ 147 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWPAYAPFDR 147 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCCcCCCcCE
Confidence 3334556788999999999999999888874 4999999999 9999999999988854 99999998654333478999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|++... . ..+...+.+.|+|||+++.
T Consensus 148 I~~~~~---~------~~~~~~l~~~L~~gG~lv~ 173 (212)
T PRK00312 148 ILVTAA---A------PEIPRALLEQLKEGGILVA 173 (212)
T ss_pred EEEccC---c------hhhhHHHHHhcCCCcEEEE
Confidence 998532 1 1223456689999999874
No 93
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.34 E-value=1.6e-11 Score=117.37 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=90.8
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
...+.+.....++.+|||||||+|.++..+++. +..+++++|..++++.+++++...++.++++++.+|+.+.+++ .
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~ 215 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--E 215 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC--C
Confidence 344444455667789999999999999999985 4569999998339999999999999988999999999876554 3
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+|+|++..+.+.. .......+++.+.+.|+|||+++..+
T Consensus 216 ~D~v~~~~~lh~~-~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 216 ADAVLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred CCEEEeEhhhhcC-ChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 7998864432221 23445688999999999999998654
No 94
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.34 E-value=8.8e-12 Score=126.40 Aligned_cols=108 Identities=21% Similarity=0.359 Sum_probs=85.6
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc--ccCCCCceeEE
Q 015534 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--IELPVTKVDII 193 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~D~I 193 (405)
.....++.+|||||||+|.++..+++.+ .+|+|+|+++ |++.+++.. +...+++++++|+.. ++++.++||+|
T Consensus 32 ~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 32 LLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred hcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCCCCCCEEEE
Confidence 3444567899999999999999999984 5999999999 998876532 223569999999964 45666899999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+++.+.+++. ...+..++..+.++|||||++++..
T Consensus 108 ~~~~~l~~l~-~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 108 FSNWLLMYLS-DKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred ehhhhHHhCC-HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 9987655553 3456789999999999999998754
No 95
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.7e-11 Score=113.09 Aligned_cols=112 Identities=24% Similarity=0.232 Sum_probs=86.7
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
+.+.++.....+.+|||+|||.|.+++.+++. +..+|+-+|+|. .++.|++++..|++.+. .++..|..+-. . ++
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v-~-~k 224 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV-E-GK 224 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc-c-cc
Confidence 44555555666669999999999999999994 567999999999 99999999999998653 66666665443 3 49
Q ss_pred eeEEEEccccccccCh--hhHHHHHHHHHhcccCCcEEE
Q 015534 190 VDIIISEWMGYFLLFE--NMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~li 226 (405)
||+|+||+..+-.... .....++....+.|++||.+.
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELW 263 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEE
Confidence 9999999864422111 112388899999999999865
No 96
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.33 E-value=2.1e-11 Score=114.69 Aligned_cols=125 Identities=24% Similarity=0.293 Sum_probs=93.1
Q ss_pred hhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEE
Q 015534 100 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK 177 (405)
Q Consensus 100 ~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (405)
.+..+..++.+.+.+.......++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|++++. .....+++++.
T Consensus 86 ~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~ 164 (275)
T PRK09328 86 VLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQ 164 (275)
T ss_pred ceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEE
Confidence 33445556667766664445567789999999999999999985 356999999999 9999999988 34446799999
Q ss_pred cccccccCCCCceeEEEEcccccccc------------------------ChhhHHHHHHHHHhcccCCcEEEe
Q 015534 178 GKIEEIELPVTKVDIIISEWMGYFLL------------------------FENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 178 ~d~~~~~~~~~~~D~Iv~~~~~~~l~------------------------~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+.+.. +.++||+|++++. +.-. +......++..+.++|+|||.++.
T Consensus 165 ~d~~~~~-~~~~fD~Iv~npP-y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 165 GDWFEPL-PGGRFDLIVSNPP-YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred ccccCcC-CCCceeEEEECCC-cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 9985532 2478999999753 2110 012235677888899999999885
No 97
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.2e-11 Score=115.81 Aligned_cols=127 Identities=25% Similarity=0.337 Sum_probs=92.8
Q ss_pred hHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEE
Q 015534 97 HEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVIT 174 (405)
Q Consensus 97 ~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~ 174 (405)
....+-++..++.+.+.+......... +|||+|||+|.+++.+++.. ...|+|+|+|+ +++.|++++..+++ .++.
T Consensus 86 ~~~vliPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~ 163 (280)
T COG2890 86 DEGVLIPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVL 163 (280)
T ss_pred CCCceecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEE
Confidence 334555666777777765422222222 89999999999999999954 45999999999 99999999999998 5677
Q ss_pred EEEcccccccCCCCceeEEEEccccccccC-----------h------------hhHHHHHHHHHhcccCCcEEEec
Q 015534 175 VLKGKIEEIELPVTKVDIIISEWMGYFLLF-----------E------------NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 175 ~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~-----------~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++.+|+.+- .. ++||+||+|+. |.-.. + .....++..+.+.|+|||.++..
T Consensus 164 ~~~~dlf~~-~~-~~fDlIVsNPP-Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 164 VVQSDLFEP-LR-GKFDLIVSNPP-YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred EEeeecccc-cC-CceeEEEeCCC-CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 777766543 22 59999999873 32211 1 12357778888999999988753
No 98
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.32 E-value=2.6e-11 Score=112.37 Aligned_cols=117 Identities=26% Similarity=0.300 Sum_probs=87.9
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (405)
...+...+..... ..+.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|++++..+++. +++++.+|+.+.
T Consensus 73 ~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~- 149 (251)
T TIGR03534 73 TEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEP- 149 (251)
T ss_pred hHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhcc-
Confidence 3344444443322 34568999999999999999984 456999999999 999999999998885 699999999763
Q ss_pred CCCCceeEEEEccccccccC------------h------------hhHHHHHHHHHhcccCCcEEEe
Q 015534 185 LPVTKVDIIISEWMGYFLLF------------E------------NMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~------------~------------~~~~~~l~~~~~~LkpgG~lip 227 (405)
++.++||+|++++. +.... + .....++..+.++|+|||.++.
T Consensus 150 ~~~~~fD~Vi~npP-y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 150 LPGGKFDLIVSNPP-YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred CcCCceeEEEECCC-CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 44589999999864 21100 0 1124678889999999999875
No 99
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.32 E-value=3.8e-12 Score=110.45 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=89.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (405)
+.-..+.+. .....+..+|.|||||+|..+..+++ .+...++|+|.|+ |++.|+++. .+++|..+|+.++.
T Consensus 16 tRPa~dLla-~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~ 88 (257)
T COG4106 16 TRPARDLLA-RVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWK 88 (257)
T ss_pred cCcHHHHHh-hCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcC
Confidence 333344333 35667778999999999999999999 6778999999999 999997764 34899999999997
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCce
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
.+ ...|+|+++.+...+ ++-..++..+...|.|||++-.+...
T Consensus 89 p~-~~~dllfaNAvlqWl---pdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 89 PE-QPTDLLFANAVLQWL---PDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred CC-Cccchhhhhhhhhhc---cccHHHHHHHHHhhCCCceEEEECCC
Confidence 54 899999998775555 44456777777899999998765443
No 100
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.32 E-value=2.7e-11 Score=109.52 Aligned_cols=101 Identities=22% Similarity=0.158 Sum_probs=80.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCC--------------CCcEEEEEcccccccC
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF--------------SNVITVLKGKIEEIEL 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~~~ 185 (405)
.++.+|||+|||.|..+..||+.|. +|+|||+|+ +++.+.+ ++++ ..+|++.++|+.++..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCc
Confidence 4667999999999999999999988 899999999 9987643 2322 2568999999998853
Q ss_pred C-CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 186 P-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 186 ~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
. .+.||+|+...+..++ .......++..+.++|+|||.++
T Consensus 112 ~~~~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 112 ADLADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred ccCCCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEE
Confidence 3 2589999976543333 55677889999999999999744
No 101
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.32 E-value=7.5e-12 Score=131.81 Aligned_cols=106 Identities=20% Similarity=0.154 Sum_probs=87.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC-CcEEEEEcccccccC-CCCceeEEEEccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL-PVTKVDIIISEWM 198 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~-~~~~~D~Iv~~~~ 198 (405)
++++|||+|||+|.+++.+++.|+++|+++|+|+ +++.|++++..|++. ++++++++|+.++.. ..++||+||+++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 5789999999999999999999888999999999 999999999999996 689999999876531 1368999999874
Q ss_pred cccccC---------hhhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLLF---------ENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~---------~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++... ......++..+.++|+|||.++.+
T Consensus 618 -~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 618 -TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred -CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 22211 223466788888999999998864
No 102
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.5e-11 Score=108.04 Aligned_cols=103 Identities=22% Similarity=0.231 Sum_probs=82.9
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+.+.+...++.+|||||||+|..+..+++. +.+|+++|..+ .++.|++++...|+.+ |.++++|...-..+..+||.
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~aPyD~ 141 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEEAPYDR 141 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCCCCCcCE
Confidence 344466789999999999999999999997 33999999999 9999999999999965 99999999876555589999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+...- . +..++.+ .+.||+||+++.
T Consensus 142 I~Vtaa---a--~~vP~~L----l~QL~~gGrlv~ 167 (209)
T COG2518 142 IIVTAA---A--PEVPEAL----LDQLKPGGRLVI 167 (209)
T ss_pred EEEeec---c--CCCCHHH----HHhcccCCEEEE
Confidence 997432 1 1222333 367899999763
No 103
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.31 E-value=2.5e-11 Score=107.79 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=80.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~ 198 (405)
.++.+|||+|||+|.+++.++..++.+|+++|.++ +++.|+++++.+++. +++++++|+.+.. ...++||+|++++.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 46779999999999999976666678999999999 999999999999874 6999999997643 12357999999985
Q ss_pred cccccChhhHHHHHHHHHh--cccCCcEEEecC
Q 015534 199 GYFLLFENMLNTVLYARDK--WLVDDGIVLPDK 229 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~--~LkpgG~lip~~ 229 (405)
|. .+....++..+.. +|+|+|+++.+.
T Consensus 131 -y~---~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 131 -FR---KGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred -CC---CChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 21 2344455554443 478888877543
No 104
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.31 E-value=1.3e-11 Score=113.06 Aligned_cols=105 Identities=17% Similarity=0.196 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C----CCCce
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKV 190 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----~~~~~ 190 (405)
..++++|||||||+|..++.+++. +..+|+++|+++ +++.|+++++.+++.++++++.+|+.+.. + +.++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 356789999999999988888873 356999999999 99999999999999989999999997752 1 13689
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
|+|+.+.- .+....++..+.++|+|||.++....
T Consensus 146 D~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 99998531 24556778888899999999987653
No 105
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=3.5e-11 Score=102.99 Aligned_cols=80 Identities=28% Similarity=0.333 Sum_probs=70.5
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+........|++|+|+|||||.+++.++-.|+.+|+|+|+++ ++++++++..+. ..+++|+.+|+.++. .++|.
T Consensus 37 ~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~~---~~~dt 111 (198)
T COG2263 37 VAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDFR---GKFDT 111 (198)
T ss_pred HHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhcC---Cccce
Confidence 333466778999999999999999999999999999999999 999999999983 367999999999986 67999
Q ss_pred EEEccc
Q 015534 193 IISEWM 198 (405)
Q Consensus 193 Iv~~~~ 198 (405)
++.|+.
T Consensus 112 vimNPP 117 (198)
T COG2263 112 VIMNPP 117 (198)
T ss_pred EEECCC
Confidence 999863
No 106
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.30 E-value=3.3e-12 Score=112.79 Aligned_cols=145 Identities=19% Similarity=0.202 Sum_probs=100.5
Q ss_pred ccccccccCchhhhH-HhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-C--CeEEEEechH-HHH
Q 015534 84 ADYYFDSYSHFGIHE-EMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-A--AHVYAVECSQ-MAN 158 (405)
Q Consensus 84 ~~~~~~~y~~~~~~~-~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g-~--~~V~~vD~s~-~~~ 158 (405)
...||+.+. ..|. .+++|+.....-...+.......++ +||+||||.|.....+.+.. . -+|+++|.|+ +++
T Consensus 35 ~~k~wD~fy--~~~~~rFfkdR~wL~~Efpel~~~~~~~~~-~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~ 111 (264)
T KOG2361|consen 35 ASKYWDTFY--KIHENRFFKDRNWLLREFPELLPVDEKSAE-TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIE 111 (264)
T ss_pred hhhhhhhhh--hhccccccchhHHHHHhhHHhhCccccChh-hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHH
Confidence 367887772 2233 3566665544333444332222222 89999999999999999842 2 5899999999 999
Q ss_pred HHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEE
Q 015534 159 MAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (405)
Q Consensus 159 ~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (405)
..+++...+. .++.....|+..-. ...+++|+|++..+...+ +.......+..+.++|||||.+++.++..|-
T Consensus 112 ~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi-~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 112 LVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAI-HPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred HHHhccccch--hhhcccceeccchhccCCCCcCccceEEEEEEEecc-ChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 9988876654 45665555654432 336899999986655544 4556678999999999999999987765543
No 107
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.6e-11 Score=107.87 Aligned_cols=105 Identities=24% Similarity=0.301 Sum_probs=93.5
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHH-cC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
|.....+.+|.+|||.|.|+|.++..++. .| ..+|+.+|+.+ .++.|++++...++.+++++..+|+.+...+ ..|
T Consensus 86 I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~-~~v 164 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE-EDV 164 (256)
T ss_pred HHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc-ccc
Confidence 44557789999999999999999999997 33 47999999999 9999999999999998899999999998877 599
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|+.++ +++-.++..+...|+|||.++.
T Consensus 165 Dav~LDm--------p~PW~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 165 DAVFLDL--------PDPWNVLEHVSDALKPGGVVVV 193 (256)
T ss_pred CEEEEcC--------CChHHHHHHHHHHhCCCcEEEE
Confidence 9999764 4667889999999999999874
No 108
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.28 E-value=5e-11 Score=110.28 Aligned_cols=119 Identities=20% Similarity=0.210 Sum_probs=84.8
Q ss_pred HhHHHHHHHHHhccC-CCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccc
Q 015534 105 VRTKSYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE 181 (405)
Q Consensus 105 ~r~~~~~~~i~~~~~-~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~ 181 (405)
..++.+.+.+..... ...+.+|||+|||+|.+++.+++ .+..+|+|+|+|+ +++.|++++..++ ++++++|+.
T Consensus 68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~ 143 (251)
T TIGR03704 68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLY 143 (251)
T ss_pred ccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeech
Confidence 344555555443222 12345899999999999999987 4445999999999 9999999998876 478899987
Q ss_pred cccC--CCCceeEEEEcccccccc------------C------------hhhHHHHHHHHHhcccCCcEEEec
Q 015534 182 EIEL--PVTKVDIIISEWMGYFLL------------F------------ENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 182 ~~~~--~~~~~D~Iv~~~~~~~l~------------~------------~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+... ..++||+|++++. |.-. + ...+..++..+.++|+|||+++..
T Consensus 144 ~~l~~~~~~~fDlVv~NPP-y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 144 DALPTALRGRVDILAANAP-YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hhcchhcCCCEeEEEECCC-CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6421 1257999999974 2210 0 012357778888999999998853
No 109
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.28 E-value=4.9e-11 Score=115.20 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc--cCCCCceeEEEEc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 196 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~Iv~~ 196 (405)
..+..+||||||+|.++..+|+ .+...++|+|+++ +++.|.+++..+++. ++.++++|+..+ .++++++|.|++.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCCceeEEEEe
Confidence 4567999999999999999998 4556999999999 999999999999985 499999999765 3567899999986
Q ss_pred cccccccCh-h--hHHHHHHHHHhcccCCcEEEec
Q 015534 197 WMGYFLLFE-N--MLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~~~l~~~-~--~~~~~l~~~~~~LkpgG~lip~ 228 (405)
....+.-.. . ..+.++..+.++|+|||.+...
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 432111000 0 1267899999999999998753
No 110
>PRK04457 spermidine synthase; Provisional
Probab=99.28 E-value=2.6e-11 Score=112.89 Aligned_cols=108 Identities=18% Similarity=0.183 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~ 197 (405)
.++++|||||||+|.++..+++ .+..+|+++|+++ +++.|++++...+..++++++.+|..++. ...++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3567999999999999999887 5567999999999 99999999876555568999999987653 2236899999875
Q ss_pred cccc-ccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYF-LLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~-l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+... ....-....++..+.+.|+|||+++.+
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 3211 100012368899999999999999863
No 111
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.28 E-value=5.9e-11 Score=108.54 Aligned_cols=102 Identities=23% Similarity=0.229 Sum_probs=79.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++.+|||||||+|.++..+++.+. +|+|+|+|+ |++.|++++...+..+++.+..+|+.. ..++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcch
Confidence 35678999999999999999999876 799999999 999999999888876679999999543 2478999998543
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.++. ..+.+..++..+.+.+++++.+.
T Consensus 137 l~~~-~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 137 LIHY-PQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhcC-CHHHHHHHHHHHHhhcCCeEEEE
Confidence 2222 23456778888877765555443
No 112
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.27 E-value=2.4e-11 Score=114.14 Aligned_cols=91 Identities=19% Similarity=0.255 Sum_probs=73.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C---CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G---AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g---~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
.++.+|||+|||+|.++..+++. + ...|+|+|+|+ |++.|+++. .++++..+|+.++++++++||+|++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEE
Confidence 35578999999999999988874 2 23799999999 999997652 2488999999999888889999998
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
... +..+.++.|+|||||.++.
T Consensus 158 ~~~----------~~~~~e~~rvLkpgG~li~ 179 (272)
T PRK11088 158 IYA----------PCKAEELARVVKPGGIVIT 179 (272)
T ss_pred ecC----------CCCHHHHHhhccCCCEEEE
Confidence 421 1234678899999999984
No 113
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.27 E-value=5.4e-11 Score=111.03 Aligned_cols=113 Identities=16% Similarity=0.040 Sum_probs=87.7
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
....++.+|||+|||+|..+..+++. + ...|+|+|+++ +++.++++++.+++. ++++++.|...+....+.||+|+
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCEEE
Confidence 34568899999999999999998884 2 35899999999 999999999999985 59999999987654446799999
Q ss_pred Eccccccc------------cChh-------hHHHHHHHHHhcccCCcEEEecCce
Q 015534 195 SEWMGYFL------------LFEN-------MLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 195 ~~~~~~~l------------~~~~-------~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
+++..+.. ..+. ....++..+.++|||||+++.++++
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 86532211 0111 1235888889999999999865544
No 114
>PRK06202 hypothetical protein; Provisional
Probab=99.26 E-value=2.8e-11 Score=111.01 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=73.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc----C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA----G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~----g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (405)
..++.+|||||||+|.++..+++. | ..+|+|+|+|+ |++.|+++....+ +++...+...++.++++||+|
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccccCCCccEE
Confidence 356789999999999998888762 3 24899999999 9999988765433 566666666666566899999
Q ss_pred EEccccccccChhhHHHHHHHHHhccc
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLV 220 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~Lk 220 (405)
+++.+.+++. ......++.++.++++
T Consensus 134 ~~~~~lhh~~-d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 134 TSNHFLHHLD-DAEVVRLLADSAALAR 159 (232)
T ss_pred EECCeeecCC-hHHHHHHHHHHHHhcC
Confidence 9986655443 2345689999999988
No 115
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.25 E-value=7.7e-11 Score=106.04 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=73.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccccc--------CCCCc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LPVTK 189 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~ 189 (405)
..++.+|||||||+|.++..+++. + ..+|+|||+++|. +++ .++++++|+.+.. +..++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----------~~~-~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------PIV-GVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----------CCC-CcEEEecCCCChHHHHHHHHHhCCCC
Confidence 567889999999999999999885 3 3599999999831 222 3899999998853 44578
Q ss_pred eeEEEEccccccccChh--------hHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFEN--------MLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~--------~~~~~l~~~~~~LkpgG~lip 227 (405)
||+|+|++..++..... ....++..+.++|+|||.++.
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 99999976433322110 124678899999999999884
No 116
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=7e-11 Score=117.86 Aligned_cols=112 Identities=18% Similarity=0.084 Sum_probs=87.0
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDII 193 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~I 193 (405)
....++.+|||+|||+|..+..+++.+. .+|+|+|+++ +++.+++++..+|+. ++++++|+.++. ++.++||.|
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEE
Confidence 3456889999999999999999998643 5999999999 999999999999874 789999998754 234689999
Q ss_pred EEccccccc------------cChhh-------HHHHHHHHHhcccCCcEEEecCce
Q 015534 194 ISEWMGYFL------------LFENM-------LNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 194 v~~~~~~~l------------~~~~~-------~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
++++..... ..+.. ...++..+.++|||||.++.++++
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 987532211 11111 246788889999999999966543
No 117
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.25 E-value=1e-10 Score=111.37 Aligned_cols=102 Identities=24% Similarity=0.204 Sum_probs=79.2
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 116 QNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+.....++.+|||||||+|.++..+++. + ..+|+++|+++ +++.|++++..+++ ++++++.+|..+.....++||+
T Consensus 74 ~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~ 152 (322)
T PRK13943 74 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDV 152 (322)
T ss_pred HhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccE
Confidence 3345668889999999999999999984 3 24799999999 99999999999988 4699999998776544468999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|++.. .+ . .+...+.+.|+|||+++.
T Consensus 153 Ii~~~---g~---~---~ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 153 IFVTV---GV---D---EVPETWFTQLKEGGRVIV 178 (322)
T ss_pred EEECC---ch---H---HhHHHHHHhcCCCCEEEE
Confidence 99842 11 1 122345678999998764
No 118
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.24 E-value=1e-10 Score=111.38 Aligned_cols=107 Identities=11% Similarity=-0.006 Sum_probs=77.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCC----ceeE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVT----KVDI 192 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~----~~D~ 192 (405)
.++.+|||+|||+|..+..+++.. ..+|+++|+|+ |++.|++++......-++.++++|+.+. .++.. ...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 466799999999999999999864 35999999999 9999999887643223578899999873 34322 1223
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+++... ...........+++.+.+.|+|||.+++.
T Consensus 142 ~~~gs~-~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGST-IGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEeccc-ccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 333221 12234556778999999999999998853
No 119
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.24 E-value=3e-11 Score=108.10 Aligned_cols=104 Identities=21% Similarity=0.219 Sum_probs=76.8
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
.+.+.....+|.+|||||||+|..+..+++. |. .+|+++|..+ +++.|++++...++. +++++++|...-.....+
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~~ap 141 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPEEAP 141 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGGG-S
T ss_pred HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccccCCC
Confidence 3444466889999999999999999999994 43 3799999999 999999999999885 699999998765444578
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
||.|++... . +..+.. +.+.|++||+++
T Consensus 142 fD~I~v~~a---~--~~ip~~----l~~qL~~gGrLV 169 (209)
T PF01135_consen 142 FDRIIVTAA---V--PEIPEA----LLEQLKPGGRLV 169 (209)
T ss_dssp EEEEEESSB---B--SS--HH----HHHTEEEEEEEE
T ss_pred cCEEEEeec---c--chHHHH----HHHhcCCCcEEE
Confidence 999998532 2 122222 446789999987
No 120
>PHA03412 putative methyltransferase; Provisional
Probab=99.23 E-value=3.9e-11 Score=107.71 Aligned_cols=101 Identities=20% Similarity=0.166 Sum_probs=78.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc----CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA----GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~----g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
.+.+|||+|||+|.+++.+++. +..+|+|+|+++ +++.|+++.. ++.++.+|+....+. ++||+||+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~-~~FDlIIsN 121 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFD-TLFDMAISN 121 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccccc-CCccEEEEC
Confidence 3679999999999999998874 345899999999 9999997752 378999999876654 799999999
Q ss_pred ccccccc---------ChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 197 WMGYFLL---------FENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 197 ~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+...-+. +......++....+++++|+.|+|..
T Consensus 122 PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~ 163 (241)
T PHA03412 122 PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQM 163 (241)
T ss_pred CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcc
Confidence 7422111 01124567788888999999988875
No 121
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.23 E-value=9.3e-11 Score=116.99 Aligned_cols=114 Identities=15% Similarity=0.070 Sum_probs=86.3
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--CCCceeEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDII 193 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~I 193 (405)
....+|.+|||+|||+|..+..+++ .+..+|+|+|+++ +++.+++++++.|+...+++..+|...... +.++||.|
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEE
Confidence 3456889999999999999999998 4446999999999 999999999999986445557777765443 34789999
Q ss_pred EEcccccc--cc-Chh----------------hHHHHHHHHHhcccCCcEEEecCce
Q 015534 194 ISEWMGYF--LL-FEN----------------MLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 194 v~~~~~~~--l~-~~~----------------~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
+++..... .. ..+ ....++..+.++|||||.++.++++
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 98642211 11 111 1357888899999999999976654
No 122
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.23 E-value=8.8e-11 Score=117.36 Aligned_cols=113 Identities=17% Similarity=0.104 Sum_probs=88.5
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCce
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~ 190 (405)
....+|.+|||+|||+|..+..+++. + ..+|+|+|+++ +++.+++++...|+. +++++++|+..+. ...++|
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccC
Confidence 44567899999999999999999884 2 45999999999 999999999999986 4999999998775 234689
Q ss_pred eEEEEccccccc----cCh--------hh-------HHHHHHHHHhcccCCcEEEecCce
Q 015534 191 DIIISEWMGYFL----LFE--------NM-------LNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 191 D~Iv~~~~~~~l----~~~--------~~-------~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
|.|+++...+.. .++ .. ...++..+.++|||||+++.++++
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 999986432211 111 11 357788999999999999866544
No 123
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.23 E-value=8.1e-11 Score=102.46 Aligned_cols=106 Identities=22% Similarity=0.289 Sum_probs=79.1
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015534 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (405)
Q Consensus 115 ~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (405)
.......++.+|||||||+|.++..+++. ..+|+++|+++ +++.+++++... ++++++++|+.++.++...||.|
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCccccCCCEE
Confidence 33345567789999999999999999998 46999999999 999999887542 46999999999988775679999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++++. +.. ..+.+..++.. ..+.++|.++.+
T Consensus 82 i~n~P-y~~-~~~~i~~~l~~--~~~~~~~~l~~q 112 (169)
T smart00650 82 VGNLP-YNI-STPILFKLLEE--PPAFRDAVLMVQ 112 (169)
T ss_pred EECCC-ccc-HHHHHHHHHhc--CCCcceEEEEEE
Confidence 99864 332 22334444332 224467777643
No 124
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.23 E-value=1e-10 Score=105.03 Aligned_cols=128 Identities=22% Similarity=0.243 Sum_probs=96.5
Q ss_pred hhcCHHhHHHHHHHHHhccC---CCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEE
Q 015534 100 MLKDVVRTKSYQNVIYQNKF---LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVIT 174 (405)
Q Consensus 100 ~l~d~~r~~~~~~~i~~~~~---~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~ 174 (405)
.+-.+..++.+.+++..... ...+..+||+|||+|.+++.++. .+...|+|+|.|+ ++..|.+|+.++++.+++.
T Consensus 123 VlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 123 VLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIE 202 (328)
T ss_pred eeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence 45566778888877765432 23455899999999999999988 6777999999999 9999999999999999999
Q ss_pred EEEccccccc-----CCCCceeEEEEccccccccC------------h------------hhHHHHHHHHHhcccCCcEE
Q 015534 175 VLKGKIEEIE-----LPVTKVDIIISEWMGYFLLF------------E------------NMLNTVLYARDKWLVDDGIV 225 (405)
Q Consensus 175 ~~~~d~~~~~-----~~~~~~D~Iv~~~~~~~l~~------------~------------~~~~~~l~~~~~~LkpgG~l 225 (405)
+++-+++.-. +..+++|+++||+. |.-.. | ..+-.++.-+.|.|+|||.+
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPP-YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~ 281 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPP-YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFE 281 (328)
T ss_pred EEecccccccccccccccCceeEEecCCC-cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeE
Confidence 9987765432 33589999999873 32111 1 11234555667999999988
Q ss_pred Eec
Q 015534 226 LPD 228 (405)
Q Consensus 226 ip~ 228 (405)
.++
T Consensus 282 ~le 284 (328)
T KOG2904|consen 282 QLE 284 (328)
T ss_pred EEE
Confidence 754
No 125
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.22 E-value=1.1e-10 Score=110.84 Aligned_cols=100 Identities=19% Similarity=0.191 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCC----CCcEEEEEcccccccCCCCceeEEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF----SNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
.++.+|||||||+|.++..+++.|. +|+|+|+|+ |++.|+++....+. ..+++|...|+.++ .++||+|+|
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 3678999999999999999999875 999999999 99999999876421 13578999998765 378999998
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
..+..++. ......++..+.+ +.+||.+|
T Consensus 219 ~~vL~H~p-~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 219 LDVLIHYP-QDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred cCEEEecC-HHHHHHHHHHHHh-hcCCEEEE
Confidence 64433222 2234456666654 45666655
No 126
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=1.4e-10 Score=116.29 Aligned_cols=112 Identities=20% Similarity=0.179 Sum_probs=87.3
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
....+|.+|||+|||+|..+..+++. +..+|+|+|+|+ +++.+++++...|+. +++++.+|+..+. +.++||+|+
T Consensus 246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~~~fD~Vl 323 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PEEQPDAIL 323 (445)
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cCCCCCEEE
Confidence 34567889999999999999888873 245999999999 999999999999985 6999999998875 347899999
Q ss_pred Eccccccc------------cChhh-------HHHHHHHHHhcccCCcEEEecCce
Q 015534 195 SEWMGYFL------------LFENM-------LNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 195 ~~~~~~~l------------~~~~~-------~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
++...... ..+.. ...++..+.++|||||+++.++++
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 76421111 01111 236889999999999999976544
No 127
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=1.2e-10 Score=115.93 Aligned_cols=113 Identities=19% Similarity=0.120 Sum_probs=88.6
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDII 193 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~I 193 (405)
....+|.+|||+|||+|..+..+++. +..+|+|+|+++ +++.+++++.+.|+. +++++++|+..+. ...++||.|
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEE
Confidence 44578899999999999999999884 346999999999 999999999999985 5999999998765 234789999
Q ss_pred EEcccccccc----Ch---------------hhHHHHHHHHHhcccCCcEEEecCce
Q 015534 194 ISEWMGYFLL----FE---------------NMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 194 v~~~~~~~l~----~~---------------~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
+++....... ++ .....++..+.++|||||.++.++++
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9865322111 11 01246788889999999999876655
No 128
>PRK00811 spermidine synthase; Provisional
Probab=99.21 E-value=1.2e-10 Score=109.66 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcC--C--CCcEEEEEccccccc-CCCCceeEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F--SNVITVLKGKIEEIE-LPVTKVDII 193 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~--~--~~~i~~~~~d~~~~~-~~~~~~D~I 193 (405)
..+++||+||||+|.++..+++. +..+|++||+++ +++.|++.+...+ . .++++++.+|...+. ...++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 34679999999999999999886 678999999999 9999999886532 1 367999999997753 234789999
Q ss_pred EEccccccccChh-hHHHHHHHHHhcccCCcEEEecC
Q 015534 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 194 v~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+++.......... ....++..+.+.|+|||+++...
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9975432211111 13577888999999999998654
No 129
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.21 E-value=1.6e-10 Score=90.61 Aligned_cols=101 Identities=31% Similarity=0.354 Sum_probs=81.4
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-CCCceeEEEEccccccc
Q 015534 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWMGYFL 202 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~Iv~~~~~~~l 202 (405)
+|||+|||+|.++..+++.+..+++++|.++ ++..+++.....+ ..+++++..|+.+... ..++||+|+++.+.+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 4899999999999999885577999999999 9998886444333 3569999999988764 45789999997653321
Q ss_pred cChhhHHHHHHHHHhcccCCcEEEec
Q 015534 203 LFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
......++..+.+.|+|||.++..
T Consensus 80 --~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 --VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 467788899999999999999864
No 130
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.20 E-value=1.4e-10 Score=116.38 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=87.4
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~ 192 (405)
....++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.+++++..+|+.+ ++++++|+.++. ++ ++||+
T Consensus 246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~-~~fD~ 323 (444)
T PRK14902 246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKFA-EKFDK 323 (444)
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccchhc-ccCCE
Confidence 34567889999999999999999984 356999999999 9999999999999865 999999998763 33 78999
Q ss_pred EEEccccccc------------cChhh-------HHHHHHHHHhcccCCcEEEecCce
Q 015534 193 IISEWMGYFL------------LFENM-------LNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 193 Iv~~~~~~~l------------~~~~~-------~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
|++++..+.. ..+.. ...++..+.++|||||.++.++++
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 9997532111 00111 235788889999999999865543
No 131
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.20 E-value=2.1e-10 Score=101.45 Aligned_cols=105 Identities=19% Similarity=0.174 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C-C-CCceeEEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L-P-VTKVDIIIS 195 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-~-~~~~D~Iv~ 195 (405)
..+.+|||++||+|.+++.++.+|+++|+++|.++ +++.+++++..+++.++++++.+|+.... + . ...+|+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 46789999999999999999999999999999999 99999999999998778999999996542 1 1 124899998
Q ss_pred ccccccccChhhHHHHHHHH--HhcccCCcEEEecC
Q 015534 196 EWMGYFLLFENMLNTVLYAR--DKWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~--~~~LkpgG~lip~~ 229 (405)
.+. |.- .....++..+ ..+|+++|.++.+.
T Consensus 128 DPP-y~~---~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 128 DPP-FFN---GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CcC-CCC---CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 774 221 2233444433 35789999888654
No 132
>PLN02672 methionine S-methyltransferase
Probab=99.19 E-value=2.1e-10 Score=123.36 Aligned_cols=136 Identities=13% Similarity=0.154 Sum_probs=98.7
Q ss_pred hhhhHHhhcCHHhHHHHHHHHHhccC-CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCC
Q 015534 94 FGIHEEMLKDVVRTKSYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFS 170 (405)
Q Consensus 94 ~~~~~~~l~d~~r~~~~~~~i~~~~~-~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~ 170 (405)
+......+-.+..++.+.+.+..... ..++.+|||+|||+|.+++.+++. +..+|+|+|+|+ +++.|++++..|+++
T Consensus 89 ~~V~p~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~ 168 (1082)
T PLN02672 89 MMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALD 168 (1082)
T ss_pred eeeCCCcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence 34444566677778888877543211 124579999999999999999985 456999999999 999999999987542
Q ss_pred ---------------CcEEEEEcccccccCC-CCceeEEEEccccccccC------------------------------
Q 015534 171 ---------------NVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLF------------------------------ 204 (405)
Q Consensus 171 ---------------~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~------------------------------ 204 (405)
++++++++|+.+.... ..+||+||+++. |....
T Consensus 169 ~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~ 247 (1082)
T PLN02672 169 DDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGF 247 (1082)
T ss_pred cccccccccccccccccEEEEECchhhhccccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCC
Confidence 4799999999765422 137999999873 32111
Q ss_pred ---h---hhHHHHHHHHHhcccCCcEEEecCc
Q 015534 205 ---E---NMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 205 ---~---~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
+ .....++....++|+|||.++.+..
T Consensus 248 ~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 248 VEDQFGLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred CCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 0 1125677778899999999987643
No 133
>PHA03411 putative methyltransferase; Provisional
Probab=99.19 E-value=2.5e-10 Score=104.90 Aligned_cols=98 Identities=21% Similarity=0.204 Sum_probs=72.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.+.+|||+|||+|.++..+++. +..+|+++|+++ |++.|+++. .+++++++|+.++... .+||+|++++..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~-~kFDlIIsNPPF 136 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESN-EKFDVVISNPPF 136 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhccc-CCCcEEEEcCCc
Confidence 4568999999999999888774 346999999999 999998763 2488999999987644 789999998753
Q ss_pred ccccChhh-----------------HHHHHHHHHhcccCCcEEE
Q 015534 200 YFLLFENM-----------------LNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 200 ~~l~~~~~-----------------~~~~l~~~~~~LkpgG~li 226 (405)
+.+..... +..++.....+|+|+|.++
T Consensus 137 ~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~ 180 (279)
T PHA03411 137 GKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAG 180 (279)
T ss_pred cccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEE
Confidence 33221111 2345555567777777654
No 134
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.18 E-value=1.7e-10 Score=102.83 Aligned_cols=115 Identities=18% Similarity=0.258 Sum_probs=92.4
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEE-ccccc
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK-GKIEE 182 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~-~d~~~ 182 (405)
.-.|...+.+ ...+++|||||++.|..++++|. .+ ..+++++|.++ +++.|++++++.|+.++|+++. +|..+
T Consensus 47 ~g~~L~~L~~---~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~ 123 (219)
T COG4122 47 TGALLRLLAR---LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALD 123 (219)
T ss_pred HHHHHHHHHH---hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHH
Confidence 3345544443 34778999999999999999999 44 56999999999 9999999999999999999999 57755
Q ss_pred cc--CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 183 IE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 183 ~~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
.. ...++||+|+... .....+.++..+.++|+|||.++....
T Consensus 124 ~l~~~~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 124 VLSRLLDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHHhccCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 43 2358999999742 235667889999999999999997653
No 135
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.17 E-value=1.3e-10 Score=108.37 Aligned_cols=126 Identities=22% Similarity=0.231 Sum_probs=91.2
Q ss_pred HHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC-CcEEE
Q 015534 98 EEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITV 175 (405)
Q Consensus 98 ~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~ 175 (405)
..++-|...+..+.... ..+++|||+-|=||.+++.++..|+.+|++||.|. +++.|++++..|+++ +++++
T Consensus 105 tGlFlDqR~nR~~v~~~------~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~ 178 (286)
T PF10672_consen 105 TGLFLDQRENRKWVRKY------AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRF 178 (286)
T ss_dssp TSS-GGGHHHHHHHHHH------CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEE
T ss_pred ceEcHHHHhhHHHHHHH------cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEE
Confidence 33445555555544332 36889999999999999999999999999999999 999999999999986 68999
Q ss_pred EEcccccccC---CCCceeEEEEccccccccC---hhhHHHHHHHHHhcccCCcEEEecC
Q 015534 176 LKGKIEEIEL---PVTKVDIIISEWMGYFLLF---ENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 176 ~~~d~~~~~~---~~~~~D~Iv~~~~~~~l~~---~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+..|+.+..- ..++||+||+++..+.-.. ..+...++..+.++|+|||.++.+.
T Consensus 179 ~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 179 IQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp EES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 9999977421 2369999999875432111 2345677888889999999988544
No 136
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.17 E-value=2.1e-10 Score=100.08 Aligned_cols=106 Identities=27% Similarity=0.411 Sum_probs=75.3
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcC--CCCcEEEEEccccccc----CCCCce
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANG--FSNVITVLKGKIEEIE----LPVTKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~----~~~~~~ 190 (405)
....++.+|||||||+|..++.+++. +..+|+..|.++.++.++.++..|+ ...++.+...|..+-. +...+|
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 45678899999999999999999997 7889999999888899999999987 5577888888875421 234689
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
|+|++.-+ +..+...+.++..+.++|+|+|.++
T Consensus 121 D~IlasDv---~Y~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 121 DVILASDV---LYDEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp SEEEEES-----S-GGGHHHHHHHHHHHBTT-TTEE
T ss_pred CEEEEecc---cchHHHHHHHHHHHHHHhCCCCEEE
Confidence 99998543 4456788999999999999999855
No 137
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.17 E-value=1.8e-10 Score=111.63 Aligned_cols=109 Identities=22% Similarity=0.214 Sum_probs=91.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC-CcEEEEEccccccc----CCCCceeEEEE
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIE----LPVTKVDIIIS 195 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~----~~~~~~D~Iv~ 195 (405)
.|++|||+-|=||.+++.+|..|+++|++||.|. .++.|++++..||+. +++.++++|+.++. -...+||+||.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 4999999999999999999999999999999999 999999999999985 66899999998764 12359999999
Q ss_pred ccccccccCh-------hhHHHHHHHHHhcccCCcEEEecCce
Q 015534 196 EWMGYFLLFE-------NMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 196 ~~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
++..+ .-+. .+...++..+.++|+|||.++.+++.
T Consensus 297 DPPsF-~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 297 DPPSF-ARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred CCccc-ccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 88533 2222 33467778888999999999976543
No 138
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.16 E-value=3e-10 Score=108.82 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=76.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-CCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~Iv~~~~ 198 (405)
.++.+|||+|||+|.+++.+++.+ .+|+|+|+++ +++.|+++++.+++ ++++++.+|+.++.. ..++||+|++++.
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 356899999999999999999986 5999999999 99999999999998 569999999987642 2357999999875
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
-. +....++..+.+ ++|+++++.
T Consensus 250 r~-----G~~~~~~~~l~~-~~~~~ivyv 272 (315)
T PRK03522 250 RR-----GIGKELCDYLSQ-MAPRFILYS 272 (315)
T ss_pred CC-----CccHHHHHHHHH-cCCCeEEEE
Confidence 22 122233333323 567766553
No 139
>PLN02476 O-methyltransferase
Probab=99.16 E-value=2.7e-10 Score=105.71 Aligned_cols=105 Identities=20% Similarity=0.207 Sum_probs=87.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C----CCCce
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKV 190 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----~~~~~ 190 (405)
..++++|||||+|+|..++.+++. + ..+|+++|.++ .++.|++++++.|+.++|+++.+|+.+.. + ..++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 456789999999999999999983 2 45899999999 99999999999999989999999997642 1 13689
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
|+|+.+. .......++..+.++|+|||.++....
T Consensus 196 D~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 196 DFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred CEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 9999753 235667888888899999999987653
No 140
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.16 E-value=4.3e-10 Score=112.77 Aligned_cols=112 Identities=22% Similarity=0.170 Sum_probs=85.2
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (405)
++.+.+.+.......++.+|||+|||+|.+++.+++.+ .+|+|+|+|+ |++.|++++..+++. +++++.+|+.+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhh
Confidence 44555555554555678899999999999999999985 5999999999 999999999999985 5999999997642
Q ss_pred ---CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 185 ---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 ---~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+..++||+|++++.-. + ...++..+.+ ++|+++++.
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~-----g-~~~~~~~l~~-~~~~~ivyv 398 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRA-----G-AAEVMQALAK-LGPKRIVYV 398 (443)
T ss_pred hhhhhcCCCCEEEECcCCc-----C-hHHHHHHHHh-cCCCeEEEE
Confidence 2346799999987422 1 2344455544 588887664
No 141
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.15 E-value=2.1e-10 Score=104.75 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=82.8
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHH--cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--- 186 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--- 186 (405)
.|.....+.+|.+|||.|+|+|.++..+++ .+..+|+..|+.+ .++.|+++++..++.+++++.+.|+....++
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 345557889999999999999999999998 3467999999999 9999999999999998999999999754332
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcc-cCCcEEEe
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWL-VDDGIVLP 227 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~lip 227 (405)
...+|.|+.++. .+-.++..+.+.| +|||+++.
T Consensus 111 ~~~~DavfLDlp--------~Pw~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 111 ESDFDAVFLDLP--------DPWEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp TTSEEEEEEESS--------SGGGGHHHHHHHE-EEEEEEEE
T ss_pred cCcccEEEEeCC--------CHHHHHHHHHHHHhcCCceEEE
Confidence 267999998653 3445667778889 89999873
No 142
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.15 E-value=2.7e-10 Score=100.92 Aligned_cols=98 Identities=21% Similarity=0.305 Sum_probs=72.2
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--------CC
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--------LP 186 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~ 186 (405)
....++.+|||+|||+|.++..+++. +..+|+++|+|+ + .. .+++++++|+.+.. .+
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhC
Confidence 45578899999999999999988874 345899999999 6 11 24788888987642 34
Q ss_pred CCceeEEEEcccccc-----ccCh---hhHHHHHHHHHhcccCCcEEEe
Q 015534 187 VTKVDIIISEWMGYF-----LLFE---NMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~-----l~~~---~~~~~~l~~~~~~LkpgG~lip 227 (405)
.++||+|+++...++ +.+. .....++..+.++|+|||+++.
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 468999998642111 1111 1346788999999999999885
No 143
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.15 E-value=2.1e-10 Score=102.34 Aligned_cols=104 Identities=20% Similarity=0.277 Sum_probs=84.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCcee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~D 191 (405)
.+.++||||||++|..++.+|+. + ..+|+.+|.++ .++.|++++...|+.++|+++.+|+.+.. .+.++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 46679999999999999999984 3 45999999999 99999999999999999999999997642 1125899
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
+|+.+. .......++..+.++|+|||.++....
T Consensus 124 ~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 124 FVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred EEEEcc------cccchhhHHHHHhhhccCCeEEEEccc
Confidence 999753 234566778888899999999997653
No 144
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.13 E-value=5.1e-10 Score=107.04 Aligned_cols=106 Identities=19% Similarity=0.202 Sum_probs=80.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc---------CCCCcEEEEEccccccc----CCC
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN---------GFSNVITVLKGKIEEIE----LPV 187 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~---------~~~~~i~~~~~d~~~~~----~~~ 187 (405)
++.+|||||||-|.-..-..+.+..+++|+|++. .++.|+++.... ...-...++.+|..... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 7889999999999888888888899999999999 999999988321 11123677888876432 222
Q ss_pred --CceeEEEEcc-ccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 188 --TKVDIIISEW-MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 188 --~~~D~Iv~~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+||+|-|-. +.|.+..+.....++..+...|+|||++|-
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 5999999965 556667788888999999999999999983
No 145
>PTZ00146 fibrillarin; Provisional
Probab=99.12 E-value=5.6e-10 Score=103.74 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=76.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc---cCCCCcee
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELPVTKVD 191 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~D 191 (405)
..+.++.+|||+|||+|.++..+++. | ...|+|||+++ |.+.+.+.+... .+|.++..|+... ....+.||
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCC
Confidence 45678899999999999999999994 3 45899999999 876665554432 3588899998642 22236899
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+++.. .......++.++.++|||||.++.
T Consensus 205 vV~~Dva-----~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 205 VIFADVA-----QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred EEEEeCC-----CcchHHHHHHHHHHhccCCCEEEE
Confidence 9999753 123444566778899999999886
No 146
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.12 E-value=1.8e-11 Score=107.05 Aligned_cols=99 Identities=19% Similarity=0.197 Sum_probs=76.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~ 197 (405)
.+=.++||+|||||..+..+... +.+.+|+|+|. |++.|.++--. + +..+++...+. ...++||+|++.-
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~Y----D--~L~~Aea~~Fl~~~~~er~DLi~AaD 196 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLY----D--TLYVAEAVLFLEDLTQERFDLIVAAD 196 (287)
T ss_pred CccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccch----H--HHHHHHHHHHhhhccCCcccchhhhh
Confidence 33579999999999999999887 67999999999 99998875322 1 34455554332 3458999999854
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+ +.+-+.++.++.....+|+|||.+.++.
T Consensus 197 V---l~YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 197 V---LPYLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred H---HHhhcchhhHHHHHHHhcCCCceEEEEe
Confidence 4 4444788899999999999999998764
No 147
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.11 E-value=3.6e-10 Score=98.49 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc-ccccCCCCceeEEEEcccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~Iv~~~~~ 199 (405)
.+.-|||||||+|+.+..+...|. .++|+|+|+ |++.|.+.--+ -.++.+|+ +.+++++++||-+|+-...
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeee
Confidence 467899999999999999999885 999999999 99999873221 24677777 5577888999999984322
Q ss_pred ccccC--------hhhHHHHHHHHHhcccCCcEEEec
Q 015534 200 YFLLF--------ENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 200 ~~l~~--------~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..+.+ ...+..++..++.+|++|++.+++
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 33322 123456788899999999998753
No 148
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.11 E-value=3.2e-10 Score=100.20 Aligned_cols=108 Identities=20% Similarity=0.274 Sum_probs=77.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcC---------------------------
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANG--------------------------- 168 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~--------------------------- 168 (405)
.....+..+|||||.+|.++..+|+ .|...|.|+|+++ .+..|+++++..-
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 4566788999999999999999999 7888999999999 9999999874321
Q ss_pred -------CCCcEEE-------EEcccccccCCCCceeEEEEcccc---ccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 169 -------FSNVITV-------LKGKIEEIELPVTKVDIIISEWMG---YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 169 -------~~~~i~~-------~~~d~~~~~~~~~~~D~Iv~~~~~---~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+++++.+ ...|+. .+....||+|+|-.+. +.-.+...+..++..+.++|.|||++|.
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 0111111 111121 1234789999993221 2223456678999999999999999984
No 149
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.10 E-value=3.2e-10 Score=99.51 Aligned_cols=105 Identities=29% Similarity=0.369 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C--CCCceeEEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L--PVTKVDIIIS 195 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~--~~~~~D~Iv~ 195 (405)
.+|.+|||+-||+|.+++.++.+|+++|+.||.++ .+...+++++..+..++++++..|..... . ...+||+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 58899999999999999999999999999999999 99999999999999888999999975442 1 3589999999
Q ss_pred ccccccccChhh-HHHHHHHHH--hcccCCcEEEecC
Q 015534 196 EWMGYFLLFENM-LNTVLYARD--KWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~~~~~-~~~~l~~~~--~~LkpgG~lip~~ 229 (405)
++. |.. .. ...++..+. .+|+++|.++.+.
T Consensus 121 DPP-Y~~---~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 121 DPP-YAK---GLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp --S-TTS---CHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCC-ccc---chHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 874 322 22 356666665 8899999988543
No 150
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.09 E-value=1.1e-09 Score=98.71 Aligned_cols=105 Identities=16% Similarity=0.031 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH-------c----CCCCcEEEEEcccccccCC--
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------N----GFSNVITVLKGKIEEIELP-- 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~----~~~~~i~~~~~d~~~~~~~-- 186 (405)
.++.+||+.|||.|.-+.+||+.|. +|+|+|+|+ .++.+.+.... . .-...|+++++|+.++...
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 4678999999999999999999998 799999999 99887552100 0 0124699999999998632
Q ss_pred -CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 187 -VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 -~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.++||+|+-..+.. .+.+.+.....+.+.++|+|||.++.
T Consensus 121 ~~~~fD~VyDra~~~-Alpp~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 121 NLPVFDIWYDRGAYI-ALPNDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred ccCCcCeeeeehhHh-cCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 26899998755433 44677888999999999999999773
No 151
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.09 E-value=1.3e-10 Score=102.79 Aligned_cols=97 Identities=21% Similarity=0.169 Sum_probs=73.2
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccccc
Q 015534 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~ 203 (405)
.++|+|||+|..++.++.. .++|+|+|+|+ |++.|++...........++...++.++.-.++++|+|+|....|.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW-- 112 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW-- 112 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh--
Confidence 8999999999888888888 78999999999 9999988654433322344555555666545799999998443232
Q ss_pred ChhhHHHHHHHHHhcccCCcEEE
Q 015534 204 FENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG~li 226 (405)
-+++.+...+.|+||+.|-++
T Consensus 113 --Fdle~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 113 --FDLERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred --hchHHHHHHHHHHcCCCCCEE
Confidence 367899999999998877433
No 152
>PLN02366 spermidine synthase
Probab=99.08 E-value=1.1e-09 Score=103.79 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHc--CC-CCcEEEEEccccccc--CCCCceeEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEAN--GF-SNVITVLKGKIEEIE--LPVTKVDII 193 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~--~~~~~~D~I 193 (405)
.++++||+||||.|.++..+++.+ ..+|+.||+++ +++.|++.+... ++ .++++++.+|...+. .+.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 456899999999999999999964 57999999999 999999988653 22 258999999986653 224689999
Q ss_pred EEccccccccCh-hhHHHHHHHHHhcccCCcEEEecCceeE
Q 015534 194 ISEWMGYFLLFE-NMLNTVLYARDKWLVDDGIVLPDKASLY 233 (405)
Q Consensus 194 v~~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (405)
+++......... -.-..+++.+.+.|+|||+++.+....+
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~ 210 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMW 210 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcc
Confidence 996533211110 1235788899999999999987654433
No 153
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.08 E-value=4.6e-10 Score=99.98 Aligned_cols=91 Identities=19% Similarity=0.182 Sum_probs=69.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc-c-cCCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~D~Iv~~~ 197 (405)
.++.+|||||||+|.++..+++.+...++|+|+++ +++.|++. +++++.+|+.+ + ++++++||+|++..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 36779999999999999998875555889999999 99888641 26788889876 3 25557899999975
Q ss_pred ccccccChhhHHHHHHHHHhcccCC
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDD 222 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~Lkpg 222 (405)
+. .+..++..+++++.+.++++
T Consensus 84 ~l---~~~~d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 84 TL---QATRNPEEILDEMLRVGRHA 105 (194)
T ss_pred Hh---HcCcCHHHHHHHHHHhCCeE
Confidence 43 33356777888877766543
No 154
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=99.07 E-value=2.7e-10 Score=108.18 Aligned_cols=220 Identities=15% Similarity=0.086 Sum_probs=153.4
Q ss_pred CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccc-ccChhhH--HHHHHHHHhccc
Q 015534 145 AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF-LLFENML--NTVLYARDKWLV 220 (405)
Q Consensus 145 ~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~-l~~~~~~--~~~l~~~~~~Lk 220 (405)
..+++-.+.++ .-.+..+++-...+.+ ++.+..=+ ..+ ++.|++.++++.-. +..-..+ --....+...+-
T Consensus 389 ~~~r~~~~l~e~~r~if~~~~~~~Klsn-~e~vp~i~---t~~-ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~~G 463 (636)
T KOG1501|consen 389 WPKRIQARLSERERVIFNQRLIQLKLSN-NESVPAIM---TSP-DSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMMHG 463 (636)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcc-cccchhhh---cCC-CCCceeecchhhhhccCchhheeeeeeHHHHHHhcC
Confidence 45777788887 6677777776666532 44333222 123 45687776653211 1000000 011234556778
Q ss_pred CCcEEEecCceeEEEEcccccccccccccccccccccchhhhhhh-----------ccCCeEEeeCCCcccccceeeeEe
Q 015534 221 DDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQA-----------MMEPLVDTVDQNQIVTNCQLLKTM 289 (405)
Q Consensus 221 pgG~lip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~-----------~~~p~~~~~~~~~~ls~p~~~~~~ 289 (405)
|+-.+.|+.+.+.+.+...+.++....+ ..++.|||++.++++. .++|+|+| ++.++++|.+++.|
T Consensus 464 ~~~~V~P~~~~L~Ai~~kF~DL~~I~S~-~G~~~GFDl~~~Dei~~kA~~~~da~~~E~~LWEY--~~~~~~d~~eIL~F 540 (636)
T KOG1501|consen 464 DELRVEPHMGVLKAIPEKFEDLQNIASD-VGTVNGFDLSFFDEISTKARTATDAIVDEQSLWEY--AGIVKGDAVEILRF 540 (636)
T ss_pred CceeeccccchhhhhhHHHHHHHhhccc-ccccccceeeehhHHHHhhchhhhhhhccchhhhc--cCeecCCceeEEEe
Confidence 9999999999999999998888765544 4689999998887664 25789988 88999999999999
Q ss_pred eCCCCCCCCCceeeeEEEEEeecceEeEEEEEEEEEEcCCCceeEEecCCCCC--------CCCeeeEEEecCCceecCC
Q 015534 290 DISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSR--------ATHWKQTVLYLEDVLTICE 361 (405)
Q Consensus 290 d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~lst~p~~~--------~~~W~q~v~~l~~p~~v~~ 361 (405)
+|......+ .-.+.+.+.|.-||+.+|++++|.+ +.|||+...- ..|.+|+||+... .+..
T Consensus 541 ~~~~~V~~Q-----k~~V~i~~~~sS~A~~mWME~~~~~----~nLSTGLL~~~~~G~~~WN~~~KQ~VYF~~t--~L~~ 609 (636)
T KOG1501|consen 541 PIDGRVSSQ-----KCVVNIDNMSSSNAIPMWMEWEFGG----INLSTGLLSISSAGVPEWNKGYKQGVYFPIT--ALRN 609 (636)
T ss_pred ccCCccccc-----eeEEEccCCCccccceeeEEeeeCc----eeecccceeecCCCCcccCccccceeEEEhH--HhCC
Confidence 999765544 3456678999999999999999984 8899876531 2577999998744 3555
Q ss_pred CCEEEEEEEEeeCCCCCceEEEEEEEE
Q 015534 362 GEAISGSLTVAPNKKNPRDVDIMLKYS 388 (405)
Q Consensus 362 g~~i~~~~~~~~~~~~~r~~~~~~~~~ 388 (405)
..++.+++.+.+++ ++|.++|.
T Consensus 610 ~ksl~~~~~F~~~T-----GDI~~qF~ 631 (636)
T KOG1501|consen 610 DKSLCLHALFDKST-----GDINFQFG 631 (636)
T ss_pred CceEEEEEEEcCCC-----CceEEEec
Confidence 66899988876544 67777764
No 155
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.06 E-value=1.6e-09 Score=108.50 Aligned_cols=113 Identities=22% Similarity=0.228 Sum_probs=84.3
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (405)
.+.+.+.+.......++.+|||+|||+|.+++.+++. +.+|+|+|+++ +++.|++++..+++. +++++.+|+.+..
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHH
Confidence 3344444544445567789999999999999999987 45999999999 999999999999984 6999999997642
Q ss_pred ---CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 185 ---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 ---~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
....+||+|+.++.-. +....++..+.+ ++|+++++.
T Consensus 355 ~~~~~~~~~D~vi~dPPr~-----G~~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPRK-----GCAAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred HHHhcCCCCCEEEECcCCC-----CCCHHHHHHHHh-cCCCEEEEE
Confidence 2235799999987422 222445555443 788887664
No 156
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.05 E-value=1.6e-09 Score=106.17 Aligned_cols=99 Identities=11% Similarity=0.125 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~ 198 (405)
.++.+|||+|||+|.+++.++..+ .+|+|+|+++ +++.|+++++.+++. +++++.+|+.++... ..+||+|+.++.
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 456799999999999999999875 5999999999 999999999999985 699999999775421 246999999986
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
-. +....++..+. .++|+++++.
T Consensus 310 r~-----G~~~~~l~~l~-~~~p~~ivyv 332 (374)
T TIGR02085 310 RR-----GIGKELCDYLS-QMAPKFILYS 332 (374)
T ss_pred CC-----CCcHHHHHHHH-hcCCCeEEEE
Confidence 22 22334445553 3688887764
No 157
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.04 E-value=3e-09 Score=99.67 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=80.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcC--C-CCcEEEEEccccccc-CCCCceeEEEE
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIIIS 195 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~~D~Iv~ 195 (405)
.+++||+||||+|.++..+++.+ ..+|+++|+++ +++.|++.+...+ + ..+++++.+|..... ...++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 44599999999999998888865 67999999999 9999999875532 1 246888988886642 12378999999
Q ss_pred ccccccccChh-hHHHHHHHHHhcccCCcEEEecC
Q 015534 196 EWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.......... ....+++.+.+.|+|||+++...
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 75422111111 13577889999999999998754
No 158
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.03 E-value=4.1e-09 Score=91.23 Aligned_cols=106 Identities=24% Similarity=0.313 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CC-CCceeEEEEc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LP-VTKVDIIISE 196 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~-~~~~D~Iv~~ 196 (405)
..|.++||+-+|+|.+++.++.+|+.+|+.||.+. .+.+++++++..++..+++++..|..... .. .+.||+|+.+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 78999999999999999999999999999999999 99999999999998888999999998542 22 2359999998
Q ss_pred cccccccChhhH--HHHHHH--HHhcccCCcEEEecCc
Q 015534 197 WMGYFLLFENML--NTVLYA--RDKWLVDDGIVLPDKA 230 (405)
Q Consensus 197 ~~~~~l~~~~~~--~~~l~~--~~~~LkpgG~lip~~~ 230 (405)
+... .+.. ...+.. -..+|+|+|.++....
T Consensus 122 PPy~----~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 122 PPYA----KGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCc----cchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 7522 1222 222222 4588999999987654
No 159
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.03 E-value=1.3e-09 Score=96.69 Aligned_cols=99 Identities=31% Similarity=0.312 Sum_probs=73.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
..++.+|||+.||.|.+++.+|+ ..++.|+|+|++| .++.++++++.|++.++++++++|..++.. ...+|-|+++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 57889999999999999999999 4467999999999 999999999999999999999999998865 58999999865
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+.. ...++..+.+++++||++-
T Consensus 178 p~~-------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 PES-------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TSS-------GGGGHHHHHHHEEEEEEEE
T ss_pred hHH-------HHHHHHHHHHHhcCCcEEE
Confidence 422 2246666778899998763
No 160
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.03 E-value=2.3e-09 Score=100.94 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=97.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc-ccccccCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEIELP 186 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~ 186 (405)
.+.+++.+.....+|..|||--||||.+.+.+.-.|+ +|+|+|++. |++-|+.|+...++.+ ..+... |+..++++
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~ 261 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLR 261 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCC
Confidence 5666777777889999999999999999999999988 999999999 9999999999998865 555555 99999998
Q ss_pred CCceeEEEEccccccccC-------hhhHHHHHHHHHhcccCCcEEEec
Q 015534 187 VTKVDIIISEWMGYFLLF-------ENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..++|.|++++. |.-.. +.....+++.+.++|++||++++.
T Consensus 262 ~~~vdaIatDPP-YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 262 DNSVDAIATDPP-YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred CCccceEEecCC-CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 677999999863 32211 345678889999999999988753
No 161
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.03 E-value=2.8e-10 Score=100.01 Aligned_cols=120 Identities=20% Similarity=0.192 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcc--CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC-CcEEEEEccccc
Q 015534 107 TKSYQNVIYQNK--FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEE 182 (405)
Q Consensus 107 ~~~~~~~i~~~~--~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~ 182 (405)
+..|.+++.+.. ....|.+|||...|-|..++.++++|+.+|+.+|.++ .++.|.-|.=..++. ..|+++.+|+.+
T Consensus 117 tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e 196 (287)
T COG2521 117 TDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE 196 (287)
T ss_pred cCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH
Confidence 345556655443 3456999999999999999999999999999999999 999887653222221 348999999988
Q ss_pred cc--CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 183 IE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 183 ~~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+. +++++||+|+.++.-+.+-++-.-..+.++++|+|||||.++
T Consensus 197 ~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 197 VVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred HHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 74 678899999998866666555566789999999999999987
No 162
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.03 E-value=1.8e-09 Score=98.94 Aligned_cols=104 Identities=14% Similarity=0.159 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C-C----CCce
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L-P----VTKV 190 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-~----~~~~ 190 (405)
.+.++|||||+++|..++.+|+. + ..+|+++|.++ .++.|++++...|+.++|+++.+++.+.. + + .++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 45679999999999999999984 2 45999999999 99999999999999999999999987752 1 1 2689
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
|+|+.+. ........+..+.++|+|||.|+....
T Consensus 158 D~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 158 DFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred cEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 9999753 134556777888899999999987654
No 163
>PRK01581 speE spermidine synthase; Validated
Probab=99.02 E-value=1.8e-09 Score=102.95 Aligned_cols=109 Identities=24% Similarity=0.286 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHH-----HHcCC-CCcEEEEEccccccc-CCCCcee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIV-----EANGF-SNVITVLKGKIEEIE-LPVTKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~-----~~~~~-~~~i~~~~~d~~~~~-~~~~~~D 191 (405)
..+++||+||||+|..+..+++.+ ..+|++||+++ +++.|++.. ....+ .++++++.+|..++. ...++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 445799999999999998888864 57999999999 999999731 11122 368999999998753 2346899
Q ss_pred EEEEccccccc--cChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 192 IIISEWMGYFL--LFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 192 ~Iv~~~~~~~l--~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+|+++...... ...-.-..++..+.+.|+|||+++...
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99997532211 011122568889999999999987653
No 164
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.01 E-value=1.5e-09 Score=99.74 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=87.2
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCC-----cEEEEEccccccc------C
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-----VITVLKGKIEEIE------L 185 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-----~i~~~~~d~~~~~------~ 185 (405)
....++..+||+|||-|.-.+-.-++|...++|+|+.+ .+..|+++.+...-.. .+.|+.+|..... .
T Consensus 113 ~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 113 LYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred HHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 34567889999999999999999899999999999999 9999998876432111 2688898876532 3
Q ss_pred CCCceeEEEEcc-ccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 186 PVTKVDIIISEW-MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 186 ~~~~~D~Iv~~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++.+||+|-|-. +.|....+.....++..+.+.|+|||++|-
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 445599999864 445556677888999999999999999983
No 165
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.98 E-value=2e-09 Score=93.19 Aligned_cols=90 Identities=22% Similarity=0.255 Sum_probs=69.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~ 196 (405)
..+|.+|||+|||.|.+...|.+.-..+++|+|+++ .+..+.+ +| +.++++|+++-. +++++||.||.+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhHhhCCCCCccEEehH
Confidence 468899999999999999999884455999999999 7766544 34 679999997743 678999999985
Q ss_pred cccccccChhhHHHHHHHHHhccc
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLV 220 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~Lk 220 (405)
.. +.....+..++.++.|+-+
T Consensus 83 qt---LQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 83 QT---LQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred hH---HHhHhHHHHHHHHHHHhcC
Confidence 43 4444567788887766633
No 166
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.97 E-value=7.4e-09 Score=98.30 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=60.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHc-CCCCcEEEEE-ccccccc----CCCCceeEE
Q 015534 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLK-GKIEEIE----LPVTKVDII 193 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~-~d~~~~~----~~~~~~D~I 193 (405)
++.+|||||||+|.+...++. ....+++|+|+++ +++.|++++..| ++.++|+++. .+..++. .+.++||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999977666655 4445999999999 999999999999 7988899865 3333322 234689999
Q ss_pred EEccc
Q 015534 194 ISEWM 198 (405)
Q Consensus 194 v~~~~ 198 (405)
+|++.
T Consensus 194 vcNPP 198 (321)
T PRK11727 194 LCNPP 198 (321)
T ss_pred EeCCC
Confidence 99985
No 167
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.97 E-value=2.1e-09 Score=96.98 Aligned_cols=107 Identities=24% Similarity=0.161 Sum_probs=81.6
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH-c------C----CCCcEEEEEcccccccC
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-N------G----FSNVITVLKGKIEEIEL 185 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-~------~----~~~~i~~~~~d~~~~~~ 185 (405)
....++.+||..|||.|.-...||+.|. +|+|+|+|+ .++.|.+.... . + -.++|+++++|+.++..
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 3456778999999999999999999988 999999999 99887432211 0 0 12468999999999864
Q ss_pred CC-CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 186 PV-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 186 ~~-~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.. ++||+|+-..+. +.+++.+-+.....+.++|+|||.++
T Consensus 112 ~~~g~fD~iyDr~~l-~Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFL-CALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp SCHHSEEEEEECSST-TTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred hhcCCceEEEEeccc-ccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 42 579999976543 34467788899999999999999954
No 168
>PRK03612 spermidine synthase; Provisional
Probab=98.97 E-value=2.2e-09 Score=109.53 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=81.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEechH-HHHHHHHH--HHH---cCCC-CcEEEEEccccccc-CCCCcee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQI--VEA---NGFS-NVITVLKGKIEEIE-LPVTKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~--~~~---~~~~-~~i~~~~~d~~~~~-~~~~~~D 191 (405)
.++++|||||||+|..+..+++.+. .+|+++|+++ +++.|+++ +.. ..+. ++++++.+|..+.. ...++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999999998764 7999999999 99999984 221 1222 57999999998753 2247899
Q ss_pred EEEEccccccccC--hhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 192 IIISEWMGYFLLF--ENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 192 ~Iv~~~~~~~l~~--~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
+|+++........ .-....+++.+.+.|+|||+++.+..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 9999754221100 01124578889999999999987653
No 169
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.94 E-value=1.3e-08 Score=89.29 Aligned_cols=117 Identities=20% Similarity=0.213 Sum_probs=84.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCe---------EEEEechH-HHHHHHHHHHHcCCCCcEEEEE
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAH---------VYAVECSQ-MANMAKQIVEANGFSNVITVLK 177 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g-~~~---------V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (405)
.+..++.......++..|||--||+|.+.+.++..+ ... ++|+|+++ +++.|++++...++.+.+.+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 455566666677888999999999999999888743 223 88999999 9999999999999998999999
Q ss_pred cccccccCCCCceeEEEEccccccc--cC----hhhHHHHHHHHHhcccCCcEEE
Q 015534 178 GKIEEIELPVTKVDIIISEWMGYFL--LF----ENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 178 ~d~~~~~~~~~~~D~Iv~~~~~~~l--~~----~~~~~~~l~~~~~~LkpgG~li 226 (405)
.|+.++++..+++|+||+++. |.. .. +.....+++.+.++|++...++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPP-yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPP-YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred cchhhcccccCCCCEEEECcc-hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 999999966689999999873 322 11 1233567788889999844443
No 170
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.94 E-value=5.4e-09 Score=98.59 Aligned_cols=88 Identities=20% Similarity=0.311 Sum_probs=72.3
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
.+.|.......++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.+++++...+..++++++++|+.+..+ ..
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~ 101 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PY 101 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cc
Confidence 3344444556788999999999999999999974 5899999999 999999999887755679999999988765 47
Q ss_pred eeEEEEccccccc
Q 015534 190 VDIIISEWMGYFL 202 (405)
Q Consensus 190 ~D~Iv~~~~~~~l 202 (405)
||+|++++. |.+
T Consensus 102 ~d~VvaNlP-Y~I 113 (294)
T PTZ00338 102 FDVCVANVP-YQI 113 (294)
T ss_pred cCEEEecCC-ccc
Confidence 899999864 433
No 171
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.91 E-value=7.7e-09 Score=101.09 Aligned_cols=98 Identities=17% Similarity=0.187 Sum_probs=80.0
Q ss_pred CCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccc
Q 015534 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (405)
+.+|||++||+|.+++.++. .++.+|+++|+++ +++.++++++.|++. .++++++|+..+....++||+|+.+++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 46899999999999999987 5667999999999 999999999999985 478999999775321367999999875
Q ss_pred cccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 201 FLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+....++....+.+++||++..+
T Consensus 135 -----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 22345666655678999999876
No 172
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.89 E-value=9.8e-09 Score=95.56 Aligned_cols=82 Identities=23% Similarity=0.343 Sum_probs=67.7
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
.+.+.......++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.+++++.. . ++++++++|+.+++++ .
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~~~--~ 91 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVDLP--E 91 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCCch--h
Confidence 3344444556678999999999999999999984 5999999999 99999988754 2 4699999999987764 5
Q ss_pred eeEEEEccc
Q 015534 190 VDIIISEWM 198 (405)
Q Consensus 190 ~D~Iv~~~~ 198 (405)
+|.|++++.
T Consensus 92 ~d~Vv~NlP 100 (258)
T PRK14896 92 FNKVVSNLP 100 (258)
T ss_pred ceEEEEcCC
Confidence 899999875
No 173
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.88 E-value=1.3e-08 Score=90.46 Aligned_cols=103 Identities=19% Similarity=0.247 Sum_probs=77.6
Q ss_pred CEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeEEEEccc
Q 015534 124 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 198 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~Iv~~~~ 198 (405)
..+||||||.|.+.+.+|+ .+...++|+|+.. .+..|.+.+...+++ ++.++++|+..+. ++++++|-|.....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 3899999999999999988 6678999999999 999999999988985 5999999998742 45589999998543
Q ss_pred cccccChh-----hHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFEN-----MLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~-----~~~~~l~~~~~~LkpgG~lip 227 (405)
+-..-... .-+.++..+.++|+|||.+..
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 32221100 126788999999999998864
No 174
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.87 E-value=1e-08 Score=92.87 Aligned_cols=99 Identities=21% Similarity=0.249 Sum_probs=64.3
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHH-HHHHHHHcCCCCcE-EEEEcccc----
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANM-AKQIVEANGFSNVI-TVLKGKIE---- 181 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~-a~~~~~~~~~~~~i-~~~~~d~~---- 181 (405)
.+..++.......++.+|||+|||+|.++..+++.|+++|+|+|+++ |+.. .++. .++ .+...++.
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~ 134 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTP 134 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCH
Confidence 34444554334468889999999999999999999999999999999 7765 2222 112 22233333
Q ss_pred -cccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 182 -EIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 182 -~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
++...-..+|++++.. ..++..+.++|+| |.++
T Consensus 135 ~~~~~d~~~~DvsfiS~-----------~~~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 135 ADIFPDFATFDVSFISL-----------ISILPELDLLLNP-NDLT 168 (228)
T ss_pred hHcCCCceeeeEEEeeh-----------HhHHHHHHHHhCc-CeEE
Confidence 2221223567666532 2246677788899 7665
No 175
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.87 E-value=7.8e-09 Score=96.96 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=65.3
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+.+.....++.+|||||||+|.++..+++.+. +|+|+|+++ |++.+++++.. ++++++++|+.+++++...+|.
T Consensus 34 i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~~~~ 108 (272)
T PRK00274 34 IVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQPLK 108 (272)
T ss_pred HHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcCcce
Confidence 33334567788999999999999999999865 999999999 99999887642 4699999999988765222599
Q ss_pred EEEccc
Q 015534 193 IISEWM 198 (405)
Q Consensus 193 Iv~~~~ 198 (405)
||+++.
T Consensus 109 vv~NlP 114 (272)
T PRK00274 109 VVANLP 114 (272)
T ss_pred EEEeCC
Confidence 999864
No 176
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.86 E-value=1.3e-08 Score=96.74 Aligned_cols=101 Identities=25% Similarity=0.291 Sum_probs=87.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..+|.+|||.-||.|.+++.+|+.|...|+|+|++| .++.+++++..|++.++++.+++|..++....+.+|-|++..+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 456999999999999999999999887799999999 9999999999999998899999999998755588999997543
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.....++....+++++||++..
T Consensus 266 -------~~a~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 266 -------KSAHEFLPLALELLKDGGIIHY 287 (341)
T ss_pred -------CcchhhHHHHHHHhhcCcEEEE
Confidence 2334566667788899998763
No 177
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.85 E-value=4.7e-08 Score=85.65 Aligned_cols=111 Identities=24% Similarity=0.273 Sum_probs=85.2
Q ss_pred HHHHHHhccCCCCCC-EEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015534 110 YQNVIYQNKFLFKDK-VVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~-~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (405)
+.+.+.-........ +++|||+|.|.-++.+|- .+..+|+.+|.+. -+...+......+++ +++++++++++ ...
T Consensus 35 i~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~~ 112 (184)
T PF02527_consen 35 ILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PEY 112 (184)
T ss_dssp HHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TTT
T ss_pred HHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-ccc
Confidence 334443333333333 899999999999998888 5667999999999 999999999999996 59999999999 333
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
..+||+|++..+ ..+..++.-+..+|++||.++...
T Consensus 113 ~~~fd~v~aRAv-------~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 113 RESFDVVTARAV-------APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp TT-EEEEEEESS-------SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCCccEEEeehh-------cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 489999999876 456788888899999999988543
No 178
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.82 E-value=3.5e-08 Score=95.90 Aligned_cols=94 Identities=18% Similarity=0.156 Sum_probs=71.6
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC----------------
Q 015534 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---------------- 186 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---------------- 186 (405)
.+|||+|||+|.+++.+++. +++|+|+|+++ +++.|++++..+++. +++++.+|+.++...
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 46999999999999988886 46999999999 999999999999985 599999999774311
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
...||+|+.++.-. +..+.++..+. +|+++++.
T Consensus 277 ~~~~d~v~lDPPR~-----G~~~~~l~~l~---~~~~ivYv 309 (353)
T TIGR02143 277 SYNCSTIFVDPPRA-----GLDPDTCKLVQ---AYERILYI 309 (353)
T ss_pred cCCCCEEEECCCCC-----CCcHHHHHHHH---cCCcEEEE
Confidence 02389999987522 23344555443 36666553
No 179
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.81 E-value=2.2e-08 Score=90.18 Aligned_cols=86 Identities=31% Similarity=0.380 Sum_probs=76.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
...+.|.......++..|||||.|||.++..+.+.|. +|+|+|+++ |+....++++....+.+.+++++|....++|
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 4566677778889999999999999999999999955 999999999 9999999998877778999999999888764
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
.||++|++.
T Consensus 123 -~fd~cVsNl 131 (315)
T KOG0820|consen 123 -RFDGCVSNL 131 (315)
T ss_pred -ccceeeccC
Confidence 899999975
No 180
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.81 E-value=3.6e-08 Score=96.14 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=77.1
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (405)
.+.+.+.+...... .+.+|||++||+|.+++.+++. +++|+|+|.++ +++.|++++..+++. +++++.+|+.++.
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~ 268 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHH
Confidence 33444444433222 2357999999999999988886 56999999999 999999999999985 6999999997742
Q ss_pred -CC--------------CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 185 -LP--------------VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 185 -~~--------------~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+. ..+||+|+.++.- . +..+.++..+.+ |+++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR-~----G~~~~~l~~l~~---~~~ivy 317 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPR-A----GLDDETLKLVQA---YERILY 317 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCC-C----CCcHHHHHHHHc---cCCEEE
Confidence 10 1258999998852 2 233444444433 566555
No 181
>PRK04148 hypothetical protein; Provisional
Probab=98.81 E-value=5e-08 Score=80.16 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=61.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcH-HHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGI-LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP- 186 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~-l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~- 186 (405)
+.+.|..+....++.+|||||||+|. ++..|++.|. .|+|+|+++ .++.|+++ .+.++.+|+.+-.+.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~ 74 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEI 74 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHH
Confidence 34445554555567899999999996 8999999876 999999999 98888764 268899999876543
Q ss_pred CCceeEEEE
Q 015534 187 VTKVDIIIS 195 (405)
Q Consensus 187 ~~~~D~Iv~ 195 (405)
-+.+|+|.+
T Consensus 75 y~~a~liys 83 (134)
T PRK04148 75 YKNAKLIYS 83 (134)
T ss_pred HhcCCEEEE
Confidence 478999998
No 182
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.81 E-value=1.1e-08 Score=88.02 Aligned_cols=77 Identities=10% Similarity=-0.018 Sum_probs=62.7
Q ss_pred EEEechH-HHHHHHHHHHHcC--CCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEE
Q 015534 149 YAVECSQ-MANMAKQIVEANG--FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (405)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (405)
+|+|+|+ |++.|+++....+ ..++++++++|+.++++++++||+|++.. .+.+..+...++++++++|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~---~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY---GLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc---hhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 4899999 9999987765322 22469999999999998878999999854 3444467889999999999999998
Q ss_pred Eec
Q 015534 226 LPD 228 (405)
Q Consensus 226 ip~ 228 (405)
+..
T Consensus 78 ~i~ 80 (160)
T PLN02232 78 SIL 80 (160)
T ss_pred EEE
Confidence 754
No 183
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.78 E-value=1.8e-08 Score=88.97 Aligned_cols=104 Identities=21% Similarity=0.172 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (405)
...++||+|||-|..+..+.-.-+.+|-.||+.+ +++.|++.+... .....++.+..++++..+..+||+|.+.|+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 3469999999999999876553378999999999 999999876552 12447889999998876667999999999866
Q ss_pred cccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|. ..++-.++..+...|+|+|.|+.
T Consensus 134 hLT-D~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 134 HLT-DEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp GS--HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCC-HHHHHHHHHHHHHhCcCCcEEEE
Confidence 664 45677999999999999999885
No 184
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.77 E-value=3e-08 Score=85.27 Aligned_cols=109 Identities=24% Similarity=0.352 Sum_probs=85.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
...+.|..+.....|++|||+|+|+|..++.+++.|++.|++.|+.+ .....+-+.+.|+.. |.++..|... .+
T Consensus 66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g---~~ 140 (218)
T COG3897 66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG---SP 140 (218)
T ss_pred HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC---CC
Confidence 45566777788889999999999999999999999999999999999 999999999999974 8899888866 34
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCc-EEE
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDG-IVL 226 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG-~li 226 (405)
..||+|+..-+ ..+...-..++. +.+.|+..| .++
T Consensus 141 ~~~Dl~LagDl---fy~~~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 141 PAFDLLLAGDL---FYNHTEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred cceeEEEeece---ecCchHHHHHHH-HHHHHHhCCCEEE
Confidence 78999998433 333344456666 444444444 444
No 185
>PLN02823 spermine synthase
Probab=98.76 E-value=5e-08 Score=93.51 Aligned_cols=107 Identities=15% Similarity=0.148 Sum_probs=80.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcC--C-CCcEEEEEccccccc-CCCCceeEEEE
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIIIS 195 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~~D~Iv~ 195 (405)
..++||.||+|.|.++..+++. +..+|+.||+++ +++.|++.+..++ + .++++++.+|...+. ...++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4579999999999999988884 577999999999 9999999886432 2 368999999998764 23478999999
Q ss_pred ccccccccCh---hhHHHHHH-HHHhcccCCcEEEec
Q 015534 196 EWMGYFLLFE---NMLNTVLY-ARDKWLVDDGIVLPD 228 (405)
Q Consensus 196 ~~~~~~l~~~---~~~~~~l~-~~~~~LkpgG~lip~ 228 (405)
+.....-... -.-..++. .+.+.|+|||+++.+
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 7432110000 01235666 788999999998754
No 186
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.6e-08 Score=82.48 Aligned_cols=85 Identities=19% Similarity=0.183 Sum_probs=73.2
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
..|........|++++|+|||+|.++...+-.+...|+|+|+.| .++++.+++....+. +.++++|+.++.+..+.|
T Consensus 38 ~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~~g~f 115 (185)
T KOG3420|consen 38 YTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELKGGIF 115 (185)
T ss_pred HHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhccCCeE
Confidence 34444455678999999999999999777777888999999999 999999999988875 799999999998877899
Q ss_pred eEEEEccc
Q 015534 191 DIIISEWM 198 (405)
Q Consensus 191 D~Iv~~~~ 198 (405)
|.++.++.
T Consensus 116 DtaviNpp 123 (185)
T KOG3420|consen 116 DTAVINPP 123 (185)
T ss_pred eeEEecCC
Confidence 99999863
No 187
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.75 E-value=1.3e-07 Score=87.27 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=81.5
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
..+.......+..+|+|||+|+|.++..+++ .+..+++.+|.-.+++.+++ .++|+++.+|+. -++| . +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~P-~-~ 159 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPLP-V-A 159 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCCS-S-E
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhhc-c-c
Confidence 3444445566678999999999999999998 66779999999558888887 378999999998 5566 4 9
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCC--cEEEecC
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD--GIVLPDK 229 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg--G~lip~~ 229 (405)
|+++...+.+.. .......+++.+++.|+|| |+|+...
T Consensus 160 D~~~l~~vLh~~-~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 160 DVYLLRHVLHDW-SDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp SEEEEESSGGGS--HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred cceeeehhhhhc-chHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 999986554433 3456678999999999999 9988543
No 188
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.75 E-value=5.1e-08 Score=88.20 Aligned_cols=94 Identities=32% Similarity=0.319 Sum_probs=71.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (405)
...++||||+|.|..+..++.. .++|++.|.|+ |....++ .|+ +++. ..++.-.+.+||+|.| .+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~----kg~----~vl~--~~~w~~~~~~fDvIsc---LN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK----KGF----TVLD--IDDWQQTDFKFDVISC---LN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh----CCC----eEEe--hhhhhccCCceEEEee---hh
Confidence 4568999999999999999887 67999999999 9665544 443 3332 2223323468999999 34
Q ss_pred cccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 201 FLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.|..-..+..+++.+++.|+|+|++|.+-
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 45555678899999999999999988654
No 189
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.71 E-value=2.2e-07 Score=82.30 Aligned_cols=107 Identities=14% Similarity=0.238 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCCc----HHHHHHHHc---CC---CeEEEEechH-HHHHHHHHH--------------HH-----cC---
Q 015534 122 KDKVVLDVGAGTG----ILSLFCAKA---GA---AHVYAVECSQ-MANMAKQIV--------------EA-----NG--- 168 (405)
Q Consensus 122 ~~~~VLDiGcG~G----~l~~~la~~---g~---~~V~~vD~s~-~~~~a~~~~--------------~~-----~~--- 168 (405)
+..+|+..||++| .+++.+.+. .. -+|+|+|+|+ +++.|++-. .+ .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5579999999999 456666661 12 3899999999 999998721 00 00
Q ss_pred -----CCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 169 -----FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 169 -----~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+..+|+|...|+.+...+.+.||+|+|.-+.-++ .+.....+++.+++.|+|||.++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 1246899999998833345899999995443333 45667899999999999999998644
No 190
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.70 E-value=1.3e-07 Score=85.51 Aligned_cols=104 Identities=18% Similarity=0.214 Sum_probs=82.9
Q ss_pred CEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeEEEEccc
Q 015534 124 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 198 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~Iv~~~~ 198 (405)
..+||||||.|.+...+|+ .+...++|||+.. .+..|.+.+.+.++. ++.+++.|+..+. .++++.|-|+.+..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 5899999999999888888 6778999999999 999999999999985 6999999998764 34459999997543
Q ss_pred ccccc--C-hh--hHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLL--F-EN--MLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~--~-~~--~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+-..- | .. .-+.++..+.+.|+|||.+.+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 32221 1 00 1257889999999999998753
No 191
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.4e-07 Score=80.22 Aligned_cols=101 Identities=18% Similarity=0.256 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
....+||||||+|..+.++++. +...+.++|+|| +++..++.+..|+. ++..+..|+..-..+ +++|+++.++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~-~~VDvLvfNP- 118 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRN-ESVDVLVFNP- 118 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhcc-CCccEEEECC-
Confidence 3678999999999999999983 456889999999 99999999998885 388999998776555 9999999876
Q ss_pred cccccC-------------------hhhHHHHHHHHHhcccCCcEEE
Q 015534 199 GYFLLF-------------------ENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 199 ~~~l~~-------------------~~~~~~~l~~~~~~LkpgG~li 226 (405)
.|.... ....+.++..+..+|.|.|+++
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Y 165 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFY 165 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEE
Confidence 233211 1124677777888889999876
No 192
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=1.6e-07 Score=92.93 Aligned_cols=115 Identities=25% Similarity=0.211 Sum_probs=89.2
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015534 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (405)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (405)
..++.+...........++.+|||+=||.|.+++.+|+. .++|+|+|+++ +++.|+++++.|++.+ ++|+.++++++
T Consensus 276 ~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~ 353 (432)
T COG2265 276 AVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHH
Confidence 345555555555566678889999999999999999976 66999999999 9999999999999976 99999999998
Q ss_pred cCCC---CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 184 ELPV---TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 184 ~~~~---~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.... ..+|+|+.++.-..+ -+.+++.+.+ ++|..+++.
T Consensus 354 ~~~~~~~~~~d~VvvDPPR~G~-----~~~~lk~l~~-~~p~~IvYV 394 (432)
T COG2265 354 TPAWWEGYKPDVVVVDPPRAGA-----DREVLKQLAK-LKPKRIVYV 394 (432)
T ss_pred hhhccccCCCCEEEECCCCCCC-----CHHHHHHHHh-cCCCcEEEE
Confidence 6442 488999998764332 2355555543 466666553
No 193
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.67 E-value=5.8e-08 Score=82.79 Aligned_cols=73 Identities=23% Similarity=0.247 Sum_probs=56.3
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--CCCc-eeEEEEccc
Q 015534 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTK-VDIIISEWM 198 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~-~D~Iv~~~~ 198 (405)
+|+|+.||.|..++.+|+. ..+|+|||+++ .++.|+.+++-.|+.++|+++++|+.++.. .... +|+|++++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 7999999999999999998 55999999999 999999999999999999999999988742 2122 899998763
No 194
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.66 E-value=2.4e-07 Score=92.68 Aligned_cols=112 Identities=14% Similarity=0.037 Sum_probs=86.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEE
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIII 194 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv 194 (405)
...+|.+|||++||.|.-+..++.. +...|+|+|+++ -++.+++++.+.|+. ++.+.+.|...+. ...+.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEE
Confidence 4578899999999999999998884 245899999999 999999999999995 4889999987653 1136899999
Q ss_pred Eccc----cccccChhh---------------HHHHHHHHHhcccCCcEEEecCce
Q 015534 195 SEWM----GYFLLFENM---------------LNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 195 ~~~~----~~~l~~~~~---------------~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
.+.. +.+-.++.. ...++..+.++|||||+++-++++
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 6532 211111111 146788888999999999987765
No 195
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.66 E-value=4.5e-07 Score=83.15 Aligned_cols=117 Identities=13% Similarity=0.139 Sum_probs=90.5
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cC--CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-C--
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-L-- 185 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~-- 185 (405)
+|..........+||||.||.|...+-+.. .+ ...|...|.|+ .++..++.++..|+.+.++|.++|+.+.. +
T Consensus 126 ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~ 205 (311)
T PF12147_consen 126 AIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAA 205 (311)
T ss_pred HHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhc
Confidence 333333334667999999999988777776 43 36899999999 99999999999999987899999997753 1
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
-....++++...+...+.....+...+..+.+.+.|||.+|...
T Consensus 206 l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 206 LDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred cCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 13567998887654444444567778999999999999998543
No 196
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.66 E-value=1.3e-07 Score=87.93 Aligned_cols=81 Identities=22% Similarity=0.403 Sum_probs=65.2
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
+.+.......++.+|||||||+|.++..+++.+. +|+++|+++ +++.+++++.. ..+++++++|+..++++ .+
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~--~~ 92 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP--DF 92 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh--Hc
Confidence 3344444566788999999999999999999864 799999999 99999987643 25699999999888764 56
Q ss_pred e---EEEEccc
Q 015534 191 D---IIISEWM 198 (405)
Q Consensus 191 D---~Iv~~~~ 198 (405)
| +|++++.
T Consensus 93 d~~~~vvsNlP 103 (253)
T TIGR00755 93 PKQLKVVSNLP 103 (253)
T ss_pred CCcceEEEcCC
Confidence 6 8888764
No 197
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.65 E-value=2e-07 Score=82.07 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=78.5
Q ss_pred EEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--------CCCceeEEE
Q 015534 125 VVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--------PVTKVDIII 194 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~D~Iv 194 (405)
+|||||||||..+..+|+ .+.....-.|.++ .....+..+...++++...-+..|+..-.- ..++||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 699999999999999998 5666788899999 777777777777776544555666655421 236899999
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|.-|.+.. .......++....++|++||.++.
T Consensus 108 ~~N~lHI~-p~~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 108 CINMLHIS-PWSAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred ehhHHHhc-CHHHHHHHHHHHHHhCCCCCEEEE
Confidence 96554543 345678899999999999999885
No 198
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.65 E-value=1.9e-07 Score=90.81 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=81.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEccc
Q 015534 123 DKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 198 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~ 198 (405)
+.+|||+.||+|..++.++.. |+.+|+++|+++ .++.++++++.|++. +++++++|+..+... ..+||+|..+++
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDPf 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDPF 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCCC
Confidence 468999999999999999986 788999999999 999999999999885 589999999876421 257999999874
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+ ....+++.+.+.+++||.+...
T Consensus 124 G-------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 G-------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C-------CcHHHHHHHHHhcccCCEEEEE
Confidence 2 3335777777889999998865
No 199
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.64 E-value=2.6e-07 Score=86.22 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=87.2
Q ss_pred CEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcC--C-CCcEEEEEcccccccC-CCCceeEEEEcc
Q 015534 124 KVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIEL-PVTKVDIIISEW 197 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~-~~~~~D~Iv~~~ 197 (405)
++||-||-|.|..+..+.+.. ..+++.||+++ +++.|++.+.... . ..|++++..|..++.- ..++||+|+++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999999999999999964 68999999999 9999999886543 2 3789999999988753 225899999975
Q ss_pred ccccccChh-hHHHHHHHHHhcccCCcEEEecCceeEEEE
Q 015534 198 MGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDKASLYLTA 236 (405)
Q Consensus 198 ~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~~~~~~~~ 236 (405)
.......+. .-..+++.+++.|+++|+++.+....+...
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 433111111 125789999999999999997765544443
No 200
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=2.4e-07 Score=84.80 Aligned_cols=87 Identities=21% Similarity=0.320 Sum_probs=71.9
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC-
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT- 188 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~- 188 (405)
.+.|.......++..|||||+|.|.++..+++.+. +|+|+|+++ ++...++.+.. .++++++++|+....++.-
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~---~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP---YDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc---ccceEEEeCchhcCcchhhc
Confidence 44555556677789999999999999999999955 899999999 99999988762 2679999999999988722
Q ss_pred ceeEEEEccccccc
Q 015534 189 KVDIIISEWMGYFL 202 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l 202 (405)
.++.||+|.. |.+
T Consensus 95 ~~~~vVaNlP-Y~I 107 (259)
T COG0030 95 QPYKVVANLP-YNI 107 (259)
T ss_pred CCCEEEEcCC-Ccc
Confidence 7899999863 544
No 201
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.58 E-value=7.6e-07 Score=85.31 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=94.1
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCC----------------------------------------
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA---------------------------------------- 146 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~---------------------------------------- 146 (405)
.+.+..+|.......++..++|-=||+|.+.+.+|..+..
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 4567777877788888889999999999999999886421
Q ss_pred eEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccc--ccChhhHH----HHHHHHHhcc
Q 015534 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF--LLFENMLN----TVLYARDKWL 219 (405)
Q Consensus 147 ~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~--l~~~~~~~----~~l~~~~~~L 219 (405)
.++|+|+++ +++.|+.|+...|+.+.|+|.++|+..+..+.+.+|+||||+. |. +..+..+. .+...+++.+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPP-YGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPP-YGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCC-cchhcCChhhHHHHHHHHHHHHHHHh
Confidence 378999999 9999999999999999999999999999755579999999973 33 23333343 3444555666
Q ss_pred cCCcEEEecC
Q 015534 220 VDDGIVLPDK 229 (405)
Q Consensus 220 kpgG~lip~~ 229 (405)
+--+..|+..
T Consensus 335 ~~ws~~v~tt 344 (381)
T COG0116 335 AGWSRYVFTT 344 (381)
T ss_pred cCCceEEEEc
Confidence 6656666543
No 202
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.55 E-value=6.8e-07 Score=74.98 Aligned_cols=112 Identities=16% Similarity=0.100 Sum_probs=84.3
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC--CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-- 184 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 184 (405)
..+.+........|..|||+|.|||.++..+.++|. ..++++|.|+ .+....+... .+.++.+|+.++.
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~ 109 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTT 109 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHHH
Confidence 444555556677888999999999999999999874 5899999999 8888877653 2678999998876
Q ss_pred ---CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 ---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 ---~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.....||.|+|....- ......--++++.+...|.+||.++--
T Consensus 110 l~e~~gq~~D~viS~lPll-~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 110 LGEHKGQFFDSVISGLPLL-NFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred HhhcCCCeeeeEEeccccc-cCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 3357899999954211 112233347788888889999998743
No 203
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.55 E-value=3.5e-07 Score=84.34 Aligned_cols=107 Identities=18% Similarity=0.160 Sum_probs=79.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCC---CCcEEEEEcccccccC-CCC-ceeEEE
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGF---SNVITVLKGKIEEIEL-PVT-KVDIII 194 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~---~~~i~~~~~d~~~~~~-~~~-~~D~Iv 194 (405)
++++||-||-|.|..+..+.+.. ..+|++||+++ +++.|++.+..... .++++++.+|...+.- ..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 67899999999999999999865 67999999999 99999998875432 2689999999987642 224 899999
Q ss_pred EccccccccChh-hHHHHHHHHHhcccCCcEEEec
Q 015534 195 SEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 195 ~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+.......... ....+++.+.+.|+|||+++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 975432111111 2357889999999999998843
No 204
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.55 E-value=2.8e-07 Score=86.34 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=77.1
Q ss_pred CCEEEEEcCCCc----HHHHHHHHcC-----CCeEEEEechH-HHHHHHHHH------------------HH-----cC-
Q 015534 123 DKVVLDVGAGTG----ILSLFCAKAG-----AAHVYAVECSQ-MANMAKQIV------------------EA-----NG- 168 (405)
Q Consensus 123 ~~~VLDiGcG~G----~l~~~la~~g-----~~~V~~vD~s~-~~~~a~~~~------------------~~-----~~- 168 (405)
..+|+..||+|| .+++.+.+.+ ..+|+|+|+|+ +++.|++-. .. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 479999999999 5566666632 24799999999 999998742 10 01
Q ss_pred ------CCCcEEEEEcccccccCC-CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 169 ------FSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 169 ------~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+...|+|...|+.+.+.+ .+.||+|+|.-+..++ .......++..+.+.|+|||+++...
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 225678888888775432 4789999995443323 44567899999999999999987543
No 205
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.55 E-value=6.3e-07 Score=79.95 Aligned_cols=95 Identities=24% Similarity=0.291 Sum_probs=81.1
Q ss_pred CCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc-eeEEEEcccc
Q 015534 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK-VDIIISEWMG 199 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~D~Iv~~~~~ 199 (405)
+.+++|||+|.|.-++.+|- .+..+|+-+|... -+...++.....+++ +++++++.++++... .. ||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~-~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE-KKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc-cccCcEEEeehc-
Confidence 68999999999999999884 5556799999999 999999999999995 599999999998743 23 999999765
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
..+..+..-+..++|+||.++
T Consensus 145 ------a~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 145 ------ASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred ------cchHHHHHHHHHhcccCCcch
Confidence 456677888889999999875
No 206
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.54 E-value=9.9e-08 Score=83.57 Aligned_cols=97 Identities=18% Similarity=0.140 Sum_probs=59.0
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
+.+.+.|. ...++..|.|+|||.+.++..+. . ..+|+..|+-. .+ + .++.+|+..+|+++
T Consensus 61 d~iI~~l~---~~~~~~viaD~GCGdA~la~~~~-~-~~~V~SfDLva----------~n---~--~Vtacdia~vPL~~ 120 (219)
T PF05148_consen 61 DVIIEWLK---KRPKSLVIADFGCGDAKLAKAVP-N-KHKVHSFDLVA----------PN---P--RVTACDIANVPLED 120 (219)
T ss_dssp HHHHHHHC---TS-TTS-EEEES-TT-HHHHH---S----EEEEESS-----------SS---T--TEEES-TTS-S--T
T ss_pred HHHHHHHH---hcCCCEEEEECCCchHHHHHhcc-c-CceEEEeeccC----------CC---C--CEEEecCccCcCCC
Confidence 34444444 23445799999999999985543 2 23799999854 12 2 46789999999999
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+++|++|+.+. |.+ .++..++.+..|+|||||.+.+.
T Consensus 121 ~svDv~VfcLS---LMG-Tn~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 121 ESVDVAVFCLS---LMG-TNWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp T-EEEEEEES------S-S-HHHHHHHHHHHEEEEEEEEEE
T ss_pred CceeEEEEEhh---hhC-CCcHHHHHHHHheeccCcEEEEE
Confidence 99999997432 222 46789999999999999998743
No 207
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.51 E-value=9.2e-07 Score=93.59 Aligned_cols=118 Identities=17% Similarity=0.163 Sum_probs=86.2
Q ss_pred HHHHHHHHhccCC-CCCCEEEEEcCCCcHHHHHHHHcC------------------------------------------
Q 015534 108 KSYQNVIYQNKFL-FKDKVVLDVGAGTGILSLFCAKAG------------------------------------------ 144 (405)
Q Consensus 108 ~~~~~~i~~~~~~-~~~~~VLDiGcG~G~l~~~la~~g------------------------------------------ 144 (405)
+.+..+|...... .++..++|.+||+|.+.+.+|..+
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 4566666665555 567899999999999988887520
Q ss_pred -CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC--CCceeEEEEcccccc--ccChhhHHHHHHHHHhc
Q 015534 145 -AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWMGYF--LLFENMLNTVLYARDKW 218 (405)
Q Consensus 145 -~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~Iv~~~~~~~--l~~~~~~~~~l~~~~~~ 218 (405)
..+++|+|+++ +++.|++++..+|+.+.+++.++|+.++..+ .+++|+|++|+. |. +.....+..+...+.+.
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPP-Yg~r~~~~~~l~~lY~~lg~~ 333 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPP-YGERLGEEPALIALYSQLGRR 333 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCC-CcCccCchHHHHHHHHHHHHH
Confidence 12699999999 9999999999999988899999999988654 247999999974 32 22223444554444444
Q ss_pred cc---CCcEEE
Q 015534 219 LV---DDGIVL 226 (405)
Q Consensus 219 Lk---pgG~li 226 (405)
|+ +|+.+.
T Consensus 334 lk~~~~g~~~~ 344 (702)
T PRK11783 334 LKQQFGGWNAA 344 (702)
T ss_pred HHHhCCCCeEE
Confidence 43 776543
No 208
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.51 E-value=7.5e-08 Score=84.59 Aligned_cols=99 Identities=19% Similarity=0.275 Sum_probs=83.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccc
Q 015534 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (405)
...++|||||.|.+...+...|..+++-+|.|. |++.++.. +.+++ .+....+|-+.+++.+.++|+|++.+-
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSls--- 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLS--- 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhh---
Confidence 357999999999999999998899999999999 99988763 33443 367788999999998899999999754
Q ss_pred ccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 202 LLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+++..+++..+..++..|||+|.+|-
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchh
Confidence 44557788888999999999999883
No 209
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.50 E-value=1.8e-07 Score=83.71 Aligned_cols=95 Identities=16% Similarity=0.174 Sum_probs=69.9
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
.+.+.|.. ......|.|+|||-+.++. .. ...|+..|+-+ -+-.++.+|+.+++++++
T Consensus 170 ~ii~~ik~---r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~ 227 (325)
T KOG3045|consen 170 VIIRKIKR---RPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA---------------VNERVIACDMRNVPLEDE 227 (325)
T ss_pred HHHHHHHh---CcCceEEEecccchhhhhh---cc-ccceeeeeeec---------------CCCceeeccccCCcCccC
Confidence 44444443 2445689999999988765 22 34899999854 224678999999999999
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
++|++|+-+. |.+ .++..++.++.|+|+|||.+....
T Consensus 228 svDvaV~CLS---LMg-tn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 228 SVDVAVFCLS---LMG-TNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred cccEEEeeHh---hhc-ccHHHHHHHHHHHhccCceEEEEe
Confidence 9999997321 212 467889999999999999887544
No 210
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1.6e-06 Score=78.47 Aligned_cols=106 Identities=24% Similarity=0.268 Sum_probs=84.5
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC--C
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--V 187 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~ 187 (405)
.|...+...||.+|+|-|+|+|.++..+++. +-.+++..|+.+ -.+.|++.++..++++++++.+.|+...-+. .
T Consensus 96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks 175 (314)
T KOG2915|consen 96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKS 175 (314)
T ss_pred HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccc
Confidence 3455577899999999999999999999993 457999999999 9999999999999999999999999887654 4
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCc-EEE
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDG-IVL 226 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG-~li 226 (405)
..+|.|+.++. .+-..+-.+...||.+| +++
T Consensus 176 ~~aDaVFLDlP--------aPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 176 LKADAVFLDLP--------APWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred cccceEEEcCC--------ChhhhhhhhHHHhhhcCceEE
Confidence 68999998653 22223333445777766 444
No 211
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.47 E-value=6.9e-07 Score=86.82 Aligned_cols=93 Identities=27% Similarity=0.259 Sum_probs=63.9
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (405)
++.+.+.+.......++ .|||+-||.|.+++.+|+. +++|+|||.++ +++.|++++..|++. +++|+.++++++.
T Consensus 182 ~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~~~ 258 (352)
T PF05958_consen 182 NEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDFAK 258 (352)
T ss_dssp HHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCC
T ss_pred HHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccchhH
Confidence 44455555554555555 8999999999999999997 56999999999 999999999999995 5999998876642
Q ss_pred ---------------CCCCceeEEEEccccccc
Q 015534 185 ---------------LPVTKVDIIISEWMGYFL 202 (405)
Q Consensus 185 ---------------~~~~~~D~Iv~~~~~~~l 202 (405)
+....+|+|+.++.-.++
T Consensus 259 ~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 259 ALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp HHCCS-GGTTGGGS-GGCTTESEEEE---TT-S
T ss_pred HHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 112368999998754433
No 212
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.46 E-value=1.7e-06 Score=76.65 Aligned_cols=109 Identities=20% Similarity=0.181 Sum_probs=86.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCce
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKV 190 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~ 190 (405)
...++++||||.=||..++..|.+ + ..+|+++|+++ ..+++.+..+..|...+|++++++..+.. .+.+.|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 457789999999999888887773 2 45999999999 99999999999999999999999986642 235899
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEE
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (405)
|+++.+. ...........+.+++++||+|+....-++.
T Consensus 151 DfaFvDa------dK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVDA------DKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEcc------chHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 9999742 1223346777788999999999987654444
No 213
>PRK00536 speE spermidine synthase; Provisional
Probab=98.46 E-value=7.8e-07 Score=82.08 Aligned_cols=102 Identities=20% Similarity=0.075 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcC--C-CCcEEEEEcccccccCCCCceeEEEEc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
...++||-||.|-|..+..+++... +|+-||+++ +++.+++.+.... + ..|++++.. +.+ ...++||+|+.+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 3558999999999999999999864 999999999 9999999665421 2 256777752 211 123789999986
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEecCceeEE
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (405)
.. ..+.+.+.+++.|+|||+++.+....+.
T Consensus 147 s~--------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 147 QE--------PDIHKIDGLKRMLKEDGVFISVAKHPLL 176 (262)
T ss_pred CC--------CChHHHHHHHHhcCCCcEEEECCCCccc
Confidence 42 1246778899999999999988766654
No 214
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=9.7e-07 Score=76.86 Aligned_cols=98 Identities=20% Similarity=0.227 Sum_probs=73.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-cCC--CeEEEEechH-HHHHHHHHHHHcC--------C-CCcEEEEEcccccccCC
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAK-AGA--AHVYAVECSQ-MANMAKQIVEANG--------F-SNVITVLKGKIEEIELP 186 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~-~g~--~~V~~vD~s~-~~~~a~~~~~~~~--------~-~~~i~~~~~d~~~~~~~ 186 (405)
+.+|.+.||+|+|+|.|+..++. -|. ..++|||.-+ .++.+++++...- + ..++.++.+|......+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 57999999999999999999986 343 2449999999 9999999987653 1 13578899999888777
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
..+||.|.+-. ....+.+++...|+|||.++
T Consensus 160 ~a~YDaIhvGA---------aa~~~pq~l~dqL~~gGrll 190 (237)
T KOG1661|consen 160 QAPYDAIHVGA---------AASELPQELLDQLKPGGRLL 190 (237)
T ss_pred cCCcceEEEcc---------CccccHHHHHHhhccCCeEE
Confidence 78999999731 11223334446678887765
No 215
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.44 E-value=1.3e-06 Score=77.85 Aligned_cols=96 Identities=27% Similarity=0.346 Sum_probs=69.4
Q ss_pred EEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccccc
Q 015534 126 VLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203 (405)
Q Consensus 126 VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~ 203 (405)
|.||||-.|.++..|.+.| +.+|+++|+++ -++.|++++...++.++|+++.+|-.+...+.+..|+|+...||.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence 6899999999999999977 56899999999 999999999999999999999999765433323489999877653
Q ss_pred ChhhHHHHHHHHHhcccCCcEEE
Q 015534 204 FENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG~li 226 (405)
..+..++.+....++....+|
T Consensus 78 --~lI~~ILe~~~~~~~~~~~lI 98 (205)
T PF04816_consen 78 --ELIIEILEAGPEKLSSAKRLI 98 (205)
T ss_dssp --HHHHHHHHHTGGGGTT--EEE
T ss_pred --HHHHHHHHhhHHHhccCCeEE
Confidence 345667776666665544555
No 216
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.44 E-value=1.6e-06 Score=77.39 Aligned_cols=108 Identities=16% Similarity=0.238 Sum_probs=64.8
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHH-------HcCC-CCcEEEEEcccccccC
Q 015534 116 QNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVE-------ANGF-SNVITVLKGKIEEIEL 185 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~-------~~~~-~~~i~~~~~d~~~~~~ 185 (405)
+...+.++.+.+|||||.|...+.+|. .++.+++|||+.+ ..+.|+.... ..|. ..++++.++|+.+.+.
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~ 115 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDF 115 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHH
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHh
Confidence 335567889999999999988777776 7888899999999 8887765432 2333 2568889999865432
Q ss_pred C---CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 186 P---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 186 ~---~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
. -...|+|+++-. .+.+..... +.....-||+|.+||-
T Consensus 116 ~~~~~s~AdvVf~Nn~---~F~~~l~~~-L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 116 VKDIWSDADVVFVNNT---CFDPDLNLA-LAELLLELKPGARIIS 156 (205)
T ss_dssp HHHHGHC-SEEEE--T---TT-HHHHHH-HHHHHTTS-TT-EEEE
T ss_pred HhhhhcCCCEEEEecc---ccCHHHHHH-HHHHHhcCCCCCEEEE
Confidence 1 146899998643 334444444 4566677899998873
No 217
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.42 E-value=4.1e-06 Score=77.37 Aligned_cols=102 Identities=22% Similarity=0.221 Sum_probs=77.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH----c----------------------------
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA----N---------------------------- 167 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~----~---------------------------- 167 (405)
....+||--|||.|.++..+|+.|. .|.|.|.|- |+-..+-.+.. +
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3457999999999999999999988 999999999 87555443321 0
Q ss_pred -------CCCCcEEEEEcccccccCCC---CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 168 -------GFSNVITVLKGKIEEIELPV---TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 168 -------~~~~~i~~~~~d~~~~~~~~---~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
..+.++....||+.++-.+. ++||+|++. +++..-..+-..++.+.++|||||..|
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHHHhccCCEEE
Confidence 01124556666776665443 699999984 556666778899999999999999776
No 218
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.37 E-value=2.5e-06 Score=86.82 Aligned_cols=106 Identities=20% Similarity=0.184 Sum_probs=81.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEcc
Q 015534 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~ 197 (405)
.+..+||||||.|.+...+|+ .+-..++|+|+.. .+..|.+.+...++. ++.++..|+..+. ++++++|.|+.+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 467899999999999998888 5667999999999 888887778888884 5889988876443 5668899999865
Q ss_pred cccccc--C-hh--hHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLL--F-EN--MLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~--~-~~--~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+-+.- | .. .-+.++..+.++|+|||.+...
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 433221 1 11 1267889999999999998753
No 219
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.35 E-value=2.6e-06 Score=80.54 Aligned_cols=88 Identities=22% Similarity=0.282 Sum_probs=68.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
..+|.++|||||++|.++..+++.|+ +|+|||..+|.... ... .+|+...+|...+..+.+.+|+++|++.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L----~~~---~~V~h~~~d~fr~~p~~~~vDwvVcDmv- 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSL----MDT---GQVEHLRADGFKFRPPRKNVDWLVCDMV- 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhh----hCC---CCEEEEeccCcccCCCCCCCCEEEEecc-
Confidence 46889999999999999999999988 99999987744332 222 5688888888776543578999999865
Q ss_pred ccccChhhHHHHHHHHHhcccCC
Q 015534 200 YFLLFENMLNTVLYARDKWLVDD 222 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~Lkpg 222 (405)
..+..+...+.++|..|
T Consensus 280 ------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ------EKPARVAELMAQWLVNG 296 (357)
T ss_pred ------cCHHHHHHHHHHHHhcC
Confidence 34556667777787665
No 220
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.32 E-value=1.9e-06 Score=81.04 Aligned_cols=77 Identities=19% Similarity=0.183 Sum_probs=63.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCC--Cce
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPV--TKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~--~~~ 190 (405)
....++..+||++||.|..+..+++.. ..+|+|+|.++ +++.|++.+.. .++++++++++.++. ++. .++
T Consensus 15 L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~~v 91 (296)
T PRK00050 15 LAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLGKV 91 (296)
T ss_pred hCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCCcc
Confidence 445678899999999999999999963 46999999999 99999988765 368999999998864 221 279
Q ss_pred eEEEEcc
Q 015534 191 DIIISEW 197 (405)
Q Consensus 191 D~Iv~~~ 197 (405)
|.|++++
T Consensus 92 DgIl~DL 98 (296)
T PRK00050 92 DGILLDL 98 (296)
T ss_pred CEEEECC
Confidence 9999864
No 221
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.32 E-value=4.3e-06 Score=77.38 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCCc----HHHHHHHHcC------CCeEEEEechH-HHHHHHHHHHH-----cC-----------------
Q 015534 122 KDKVVLDVGAGTG----ILSLFCAKAG------AAHVYAVECSQ-MANMAKQIVEA-----NG----------------- 168 (405)
Q Consensus 122 ~~~~VLDiGcG~G----~l~~~la~~g------~~~V~~vD~s~-~~~~a~~~~~~-----~~----------------- 168 (405)
...+|+-+||+|| .+++.+.+.+ .-+|+|+|+|. +++.|++-.=. .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4679999999999 5677777743 24899999999 99998762200 11
Q ss_pred ------CCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 169 ------FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 169 ------~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+...|.|...|+.+-....+.||+|+|.-+.-++ .......++...+..|+|||.++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF-d~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF-DEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee-CHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 1234667777776655223789999995443333 4556778999999999999998854
No 222
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=4.1e-06 Score=74.80 Aligned_cols=107 Identities=24% Similarity=0.304 Sum_probs=77.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcE-EEEEcccccccCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVI-TVLKGKIEEIELP 186 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i-~~~~~d~~~~~~~ 186 (405)
.+..++....-..+++++||||+.||.++..+.+.|+++|+|+|..- .+..-- +.. .++ .+...++..+...
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL---R~d---~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL---RND---PRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH---hcC---CcEEEEecCChhhCCHH
Confidence 55666666666788999999999999999999999999999999987 554321 111 233 3444555554321
Q ss_pred --CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 187 --VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 --~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+..|+++|+.. + -.+..++..+..+++|+|.+++
T Consensus 140 ~~~~~~d~~v~DvS--F----ISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 140 DFTEKPDLIVIDVS--F----ISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HcccCCCeEEEEee--h----hhHHHHHHHHHHhcCCCceEEE
Confidence 257899999642 1 2556788888899999998773
No 223
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.27 E-value=5.8e-07 Score=88.27 Aligned_cols=119 Identities=15% Similarity=0.251 Sum_probs=76.7
Q ss_pred hHHHHHHHHHhccCC--CCC--CEEEEEcCCCcHHHHHHHHcCCCeEEEE---echH-HHHHHHHHHHHcCCCCcEEEEE
Q 015534 106 RTKSYQNVIYQNKFL--FKD--KVVLDVGAGTGILSLFCAKAGAAHVYAV---ECSQ-MANMAKQIVEANGFSNVITVLK 177 (405)
Q Consensus 106 r~~~~~~~i~~~~~~--~~~--~~VLDiGcG~G~l~~~la~~g~~~V~~v---D~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (405)
....|.+.|.+.... ..+ .++||+|||+|.++..+...+. .+..+ |..+ .+..|.+ .|++.-+- .
T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfale----RGvpa~~~--~ 169 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALE----RGVPAMIG--V 169 (506)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhh----cCcchhhh--h
Confidence 345677767665544 223 4799999999999999999865 22222 3334 4444443 35543221 2
Q ss_pred cccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeE
Q 015534 178 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (405)
Q Consensus 178 ~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (405)
.-...++++++.||+|.|.-.. ......-..++-++.|+|+|||.++.+...++
T Consensus 170 ~~s~rLPfp~~~fDmvHcsrc~--i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 170 LGSQRLPFPSNAFDMVHCSRCL--IPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hccccccCCccchhhhhccccc--ccchhcccceeehhhhhhccCceEEecCCccc
Confidence 2346788889999999984211 11111113477889999999999998887777
No 224
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=2.2e-05 Score=76.40 Aligned_cols=115 Identities=21% Similarity=0.139 Sum_probs=86.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcC---CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCce
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAG---AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g---~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~ 190 (405)
+...+|.+|||+.++.|.=+..+++.. ...|+|+|.++ -+...++++++.|+.+ +.+++.|...+. ...++|
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccCcC
Confidence 567899999999999999888888853 23679999999 9999999999999976 788888876543 222369
Q ss_pred eEEEEcccccc--cc----------Chh-------hHHHHHHHHHhcccCCcEEEecCceeE
Q 015534 191 DIIISEWMGYF--LL----------FEN-------MLNTVLYARDKWLVDDGIVLPDKASLY 233 (405)
Q Consensus 191 D~Iv~~~~~~~--l~----------~~~-------~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (405)
|.|+.+..... .. ... ....++....++|||||.++.+++++.
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 99998642221 11 011 124778888999999999998776543
No 225
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.20 E-value=2.8e-06 Score=82.07 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=93.5
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
....++..++|+|||.|.....++..+...++|+|.++ .+..+........+.++..++.+|+-..++++..||.+.+.
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEE
Confidence 44567779999999999999999997777999999999 99988888888888888888999999999999999999983
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
....+.+....++.++.++++|||.++..
T Consensus 186 ---d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 186 ---EVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred ---eecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 33556678889999999999999998854
No 226
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.19 E-value=2.3e-06 Score=75.28 Aligned_cols=94 Identities=28% Similarity=0.355 Sum_probs=59.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccccc--------CC--CCc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LP--VTK 189 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g--~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~--~~~ 189 (405)
++.+|||+||++|.++..+++.+ ..+|+|+|+.++ ... ..+.++.+|+.+.. ++ .++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 44899999999999999999987 679999999873 111 23677777765432 11 268
Q ss_pred eeEEEEccccccccC----h----hhHHHHHHHHHhcccCCcEEE
Q 015534 190 VDIIISEWMGYFLLF----E----NMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~----~----~~~~~~l~~~~~~LkpgG~li 226 (405)
+|+|+|+........ + ......+..+..+|+|||.+|
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v 136 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFV 136 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEE
Confidence 999999763222111 1 112233334457899999876
No 227
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.18 E-value=5.4e-06 Score=77.36 Aligned_cols=85 Identities=24% Similarity=0.300 Sum_probs=67.3
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC-
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV- 187 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~- 187 (405)
..+.|.+.....++..|||||+|.|.++..+++.+ ++|+++|+++ +++..++.+... .+++++.+|+.++..+.
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~---~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN---PNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC---SSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc---ccceeeecchhccccHHh
Confidence 34444444455688999999999999999999987 7999999999 999999876622 57999999999887652
Q ss_pred --CceeEEEEccc
Q 015534 188 --TKVDIIISEWM 198 (405)
Q Consensus 188 --~~~D~Iv~~~~ 198 (405)
.....|+++..
T Consensus 94 ~~~~~~~vv~NlP 106 (262)
T PF00398_consen 94 LKNQPLLVVGNLP 106 (262)
T ss_dssp CSSSEEEEEEEET
T ss_pred hcCCceEEEEEec
Confidence 36778888753
No 228
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.17 E-value=2.3e-06 Score=75.04 Aligned_cols=99 Identities=20% Similarity=0.196 Sum_probs=74.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEEc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~~ 196 (405)
....|+|.-||.|..++..|..|. .|+++|++| -+..|+++++-.|++++|+|++||+.++. +....+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 456899999999999988888866 999999999 99999999999999999999999998763 333557788875
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcE
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGI 224 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 224 (405)
+... +++.+..-+..+...++|.|.
T Consensus 173 ppwg---gp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 173 PPWG---GPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred CCCC---CcchhhhhhhhhhhhcchhHH
Confidence 4311 222333333344455555543
No 229
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.16 E-value=1e-05 Score=77.53 Aligned_cols=113 Identities=20% Similarity=0.132 Sum_probs=72.6
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHc--------CCCeEEEEechH-HHHHHHHHHHHcCCCC-cEEEEEcccccc
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA--------GAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEI 183 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~--------g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~ 183 (405)
+.......++.+|||.+||+|.+...+.+. ....++|+|+++ ++..|+-++.-.+... ...+..+|....
T Consensus 38 ~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~ 117 (311)
T PF02384_consen 38 MVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEN 117 (311)
T ss_dssp HHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTS
T ss_pred HHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccc
Confidence 333345567789999999999998887762 456999999999 9999998877666542 245788887554
Q ss_pred cCC--CCceeEEEEccccccc--cCh----------------hhHHHHHHHHHhcccCCcEEE
Q 015534 184 ELP--VTKVDIIISEWMGYFL--LFE----------------NMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 184 ~~~--~~~~D~Iv~~~~~~~l--~~~----------------~~~~~~l~~~~~~LkpgG~li 226 (405)
+.. ..+||+|++++..... ... ..--.++..+.+.|++||++.
T Consensus 118 ~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 118 DKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp HSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred cccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 432 3789999998642211 000 011246677789999999864
No 230
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=3.7e-06 Score=82.61 Aligned_cols=77 Identities=30% Similarity=0.338 Sum_probs=67.2
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015534 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (405)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (405)
.-.+.+...+.....+..++.+||+-||||.+++.+++. +++|+|||+++ .++.|+.++..||++ +.+|+++-.+++
T Consensus 366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~ 443 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDL 443 (534)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhc
Confidence 344566667777788888899999999999999999886 78999999999 999999999999996 599999977665
No 231
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.10 E-value=1.6e-05 Score=66.94 Aligned_cols=75 Identities=21% Similarity=0.403 Sum_probs=60.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-----cCCCeEEEEechH-HHHHHHHHHHHcC--CCCcEEEEEcccccccCCCCcee
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAK-----AGAAHVYAVECSQ-MANMAKQIVEANG--FSNVITVLKGKIEEIELPVTKVD 191 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~-----~g~~~V~~vD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D 191 (405)
..+..+|+|+|||.|.++..++. ....+|+++|.++ .++.|.++.+..+ +..++++..+++.+... ....+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 36678999999999999999999 5456999999999 9999999988877 54567777777765533 36778
Q ss_pred EEEE
Q 015534 192 IIIS 195 (405)
Q Consensus 192 ~Iv~ 195 (405)
+++.
T Consensus 102 ~~vg 105 (141)
T PF13679_consen 102 ILVG 105 (141)
T ss_pred EEEE
Confidence 8886
No 232
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=2.7e-05 Score=68.70 Aligned_cols=100 Identities=25% Similarity=0.262 Sum_probs=68.7
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccccc--------C
Q 015534 116 QNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------L 185 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~-~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~ 185 (405)
+..-..++.+|+|||+-.|.++..+++. |. .+|+|+|+.||- .+ ..+.++++|++.-. +
T Consensus 39 k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------~~-~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 39 KFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------PI-PGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred hcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------cC-CCceEEeeeccCccHHHHHHHHc
Confidence 3334567899999999999999999994 32 359999998821 12 23899999997754 3
Q ss_pred CCCceeEEEEccccccc-----cC---hhhHHHHHHHHHhcccCCcEEE
Q 015534 186 PVTKVDIIISEWMGYFL-----LF---ENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l-----~~---~~~~~~~l~~~~~~LkpgG~li 226 (405)
+..++|+|+|++....- .+ .......+.-...+|+|||.++
T Consensus 108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 34568999997643211 11 1112344455568999999987
No 233
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.09 E-value=3.1e-05 Score=67.81 Aligned_cols=103 Identities=20% Similarity=0.231 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~ 197 (405)
.+|.+||+||-|.|+....+-++...+=+.||..| .++..+...-.. .++|.++.+..++.. ++++.||-|+-+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEeec
Confidence 67889999999999999999887766778899999 888776543222 256888888888764 5678899999754
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
. ...-+++..+.+.+.++|||+|++-..
T Consensus 178 y---~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 178 Y---SELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred h---hhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 3 222356677888899999999987643
No 234
>PRK10742 putative methyltransferase; Provisional
Probab=98.05 E-value=3.2e-05 Score=70.26 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=66.8
Q ss_pred hccCCCCCC--EEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc------C--CCCcEEEEEccccccc
Q 015534 116 QNKFLFKDK--VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN------G--FSNVITVLKGKIEEIE 184 (405)
Q Consensus 116 ~~~~~~~~~--~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~------~--~~~~i~~~~~d~~~~~ 184 (405)
+...+.+|. +|||+-+|+|..++.++..|+ +|+++|.++ +....++.+... + +..+++++++|..++.
T Consensus 80 kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L 158 (250)
T PRK10742 80 KAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL 158 (250)
T ss_pred HHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH
Confidence 334456666 999999999999999999988 499999999 999999888874 2 2257999999998764
Q ss_pred C-CCCceeEEEEcccc
Q 015534 185 L-PVTKVDIIISEWMG 199 (405)
Q Consensus 185 ~-~~~~~D~Iv~~~~~ 199 (405)
- ....||+|+.++|.
T Consensus 159 ~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 159 TDITPRPQVVYLDPMF 174 (250)
T ss_pred hhCCCCCcEEEECCCC
Confidence 2 12479999999873
No 235
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.02 E-value=3.9e-05 Score=71.85 Aligned_cols=77 Identities=26% Similarity=0.277 Sum_probs=49.8
Q ss_pred CCEEEEEcCCCc-HHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHc-CCCCcEEEEEccccccc-----CCCCceeEE
Q 015534 123 DKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGKIEEIE-----LPVTKVDII 193 (405)
Q Consensus 123 ~~~VLDiGcG~G-~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~-----~~~~~~D~I 193 (405)
..++||||||.. +..+..++ .|. +++|+|+++ .++.|++++..| ++.++|+++...-.... .+.+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 458999999997 55666666 544 999999999 999999999999 99999999876433221 234789999
Q ss_pred EEccccc
Q 015534 194 ISEWMGY 200 (405)
Q Consensus 194 v~~~~~~ 200 (405)
+|++..|
T Consensus 182 mCNPPFy 188 (299)
T PF05971_consen 182 MCNPPFY 188 (299)
T ss_dssp EE-----
T ss_pred ecCCccc
Confidence 9998533
No 236
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.02 E-value=8.6e-05 Score=65.98 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=72.0
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH-cC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCcee
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVD 191 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D 191 (405)
..+.+|.+||-+|+.+|.....++. .| ...|+|||.|+ ..+..-..+++. .+|--+..|+..-. .--+.+|
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVD 145 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EE
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhccccccc
Confidence 4578899999999999999999998 55 66999999999 665555555544 45777888886532 1136899
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+++.. ......-++..+..+||+||.++.
T Consensus 146 vI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 146 VIFQDVA-----QPDQARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp EEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEecCC-----ChHHHHHHHHHHHhhccCCcEEEE
Confidence 9998642 335666777888899999999874
No 237
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.99 E-value=2.1e-05 Score=66.12 Aligned_cols=58 Identities=33% Similarity=0.471 Sum_probs=50.2
Q ss_pred EEEEEcCCCcHHHHHHHHcCCC-eEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015534 125 VVLDVGAGTGILSLFCAKAGAA-HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~~g~~-~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (405)
+|||||||.|.++..+++.+.. +|+++|+++ +.+.++++++.+++++ +++++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeCC
Confidence 4899999999999999997653 899999999 9999999999998854 88888776543
No 238
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.97 E-value=4.3e-06 Score=66.59 Aligned_cols=99 Identities=22% Similarity=0.340 Sum_probs=44.8
Q ss_pred EEEcCCCcHHHHHHHHc----CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEccccc
Q 015534 127 LDVGAGTGILSLFCAKA----GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMGY 200 (405)
Q Consensus 127 LDiGcG~G~l~~~la~~----g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~~~~ 200 (405)
||||+..|..+..+++. +..+++++|..+..+.+++.++..++.++++++.++..+.. ++.+++|+|+...-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 68999999888887762 22379999998854455666666777788999999997652 22479999997642
Q ss_pred cccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 201 FLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+........+..+.+.|+|||+++..+
T Consensus 79 --H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 --HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred --CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 122445566777889999999998754
No 239
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.94 E-value=0.00012 Score=61.46 Aligned_cols=98 Identities=26% Similarity=0.330 Sum_probs=67.3
Q ss_pred EEEEcCCCcHHHHHHHHcCC--CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc--ccCCC-CceeEEEEcccc
Q 015534 126 VLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--IELPV-TKVDIIISEWMG 199 (405)
Q Consensus 126 VLDiGcG~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~-~~~D~Iv~~~~~ 199 (405)
++|+|||+|... .+++... ..++++|+++ ++..++......+. ..+.+...+... +++.. ..||++.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999876 4444322 3899999999 88886555433211 116788888776 56654 489999433221
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+ . .. ....+..+.+.|+|+|.++...
T Consensus 130 ~-~--~~-~~~~~~~~~~~l~~~g~~~~~~ 155 (257)
T COG0500 130 H-L--LP-PAKALRELLRVLKPGGRLVLSD 155 (257)
T ss_pred h-c--CC-HHHHHHHHHHhcCCCcEEEEEe
Confidence 1 1 12 6778888999999999987544
No 240
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.92 E-value=0.00014 Score=68.14 Aligned_cols=110 Identities=16% Similarity=0.103 Sum_probs=65.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-c-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (405)
....|........+.+|||+|||+|..+..+.. . ....++++|.|+ |++.++..+....-....... ........+
T Consensus 21 vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~ 99 (274)
T PF09243_consen 21 VLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVLYRDFLP 99 (274)
T ss_pred HHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhhhccccc
Confidence 334444444556778999999999976655555 2 356899999999 999999987654321111111 111111111
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccC
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVD 221 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkp 221 (405)
....|+|++.-+..-+.. .....+++.+.+.+.+
T Consensus 100 ~~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPS-AARAELVRSLWNKTAP 133 (274)
T ss_pred CCCCcEEEEehhhhcCCc-hHHHHHHHHHHHhccC
Confidence 234499998544444444 4555666666666655
No 241
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.91 E-value=4.9e-05 Score=71.62 Aligned_cols=113 Identities=19% Similarity=0.132 Sum_probs=84.6
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~ 192 (405)
....++.+|||+.+|.|.=+..+++. + ...|+|+|+++ -+...++++.+.|+. ++.++..|..... .....||.
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHTTTEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccccccch
Confidence 34678899999999999998888883 2 56999999999 999999999999985 4888878887762 22246999
Q ss_pred EEEccccccc----cCh--------hh-------HHHHHHHHHhcc----cCCcEEEecCce
Q 015534 193 IISEWMGYFL----LFE--------NM-------LNTVLYARDKWL----VDDGIVLPDKAS 231 (405)
Q Consensus 193 Iv~~~~~~~l----~~~--------~~-------~~~~l~~~~~~L----kpgG~lip~~~~ 231 (405)
|+.+..-... .++ .. ...++....+++ ||||+++.++++
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 9985422211 111 11 146788888999 999999966544
No 242
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.90 E-value=6.2e-05 Score=73.95 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=79.4
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccccc
Q 015534 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~ 203 (405)
++|-+|||.-.++..+.+.|...|+.+|+|+ .++.+...-.... .-+.+...|+..+.+++++||+|+...-+..+.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~--~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER--PEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC--cceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 8999999999999999999999999999999 7777665443221 348999999999999999999999865333332
Q ss_pred -Ch------hhHHHHHHHHHhcccCCcEEE
Q 015534 204 -FE------NMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 204 -~~------~~~~~~l~~~~~~LkpgG~li 226 (405)
.+ ......+..+.++|+|||+.+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 22 123466788899999999965
No 243
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=7.9e-06 Score=68.21 Aligned_cols=116 Identities=20% Similarity=0.254 Sum_probs=80.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCC--CcEEEEEcccccc
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFS--NVITVLKGKIEEI 183 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~--~~i~~~~~d~~~~ 183 (405)
.+.-.+.+......|.+||++|.|- |..++++|. +....|.-.|-++ .++..++....|..+ .++.++.-+....
T Consensus 16 ala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a 95 (201)
T KOG3201|consen 16 ALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA 95 (201)
T ss_pred HHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh
Confidence 4444455555556778999999995 666777777 6678999999999 999999888777332 2333333333222
Q ss_pred c--CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 184 E--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 184 ~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
. .....||+|+|. .+++..+.-..+.+.++.+|+|.|..++
T Consensus 96 qsq~eq~tFDiIlaA---DClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 96 QSQQEQHTFDIILAA---DCLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred HHHHhhCcccEEEec---cchhHHHHHHHHHHHHHHHhCcccceeE
Confidence 1 223689999994 3344445667888999999999998554
No 244
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.89 E-value=0.00024 Score=62.88 Aligned_cols=94 Identities=21% Similarity=0.233 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.+.++.||||-.|.++..+.+. .+..+++.|+++ .++.|.+++.++++.+++++..+|....--++..+|+|+...||
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 4556999999999999999995 478999999999 99999999999999999999999985443344589999987765
Q ss_pred ccccChhhHHHHHHHHHhccc
Q 015534 200 YFLLFENMLNTVLYARDKWLV 220 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~Lk 220 (405)
. ..+..++.+....|+
T Consensus 96 G-----~lI~~ILee~~~~l~ 111 (226)
T COG2384 96 G-----TLIREILEEGKEKLK 111 (226)
T ss_pred H-----HHHHHHHHHhhhhhc
Confidence 3 344566666655555
No 245
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.87 E-value=0.00011 Score=69.19 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHH--HH-c--CC-CCcEEEEEcccccccC-CCCcee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIV--EA-N--GF-SNVITVLKGKIEEIEL-PVTKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~--~~-~--~~-~~~i~~~~~d~~~~~~-~~~~~D 191 (405)
..-.+||-+|.|.|.....+.+.+ ..+++-||.+| |++.++++. .+ | .+ ..+++++..|+.++.- ..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 344689999999999999999986 78999999999 999998433 22 2 12 2689999999988742 246899
Q ss_pred EEEEccccccccChh--hHHHHHHHHHhcccCCcEEEecCceeEEEE
Q 015534 192 IIISEWMGYFLLFEN--MLNTVLYARDKWLVDDGIVLPDKASLYLTA 236 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lip~~~~~~~~~ 236 (405)
+||.+..+..-.... .-..+...+.+.|+++|.++.+....|..|
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp 414 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTP 414 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCC
Confidence 999865332111001 113556667899999999998876666543
No 246
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.85 E-value=7.4e-05 Score=76.84 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC---------CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CC
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAG---------AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP 186 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g---------~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 186 (405)
.+.+|||.|||+|.+...+++.. ...++|+|+++ .+..|+.++...+. ..+.+...|..... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 45699999999999988887632 14799999999 99999998877652 12555655543221 11
Q ss_pred CCceeEEEEccc
Q 015534 187 VTKVDIIISEWM 198 (405)
Q Consensus 187 ~~~~D~Iv~~~~ 198 (405)
.+.||+||+|+.
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 258999999974
No 247
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=9.1e-05 Score=60.94 Aligned_cols=103 Identities=15% Similarity=0.140 Sum_probs=78.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
....+..+.+|+|+|.|.+.+.+++.|...-+|+|+++ .+.+++-+.-+.|......|...|+....+.+-.+=+|+.
T Consensus 68 l~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFg- 146 (199)
T KOG4058|consen 68 LRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFG- 146 (199)
T ss_pred ccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEee-
Confidence 33455568999999999999999999888999999999 9999999999999988899999999888775334434432
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
-+..++.+-..+..-+..+..++-+
T Consensus 147 -------aes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 147 -------AESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred -------hHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 2345555556665566667777643
No 248
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.83 E-value=6.1e-05 Score=69.29 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=68.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCC----------------C-----------
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF----------------S----------- 170 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~----------------~----------- 170 (405)
...+|.++||||||.-+.....|..-+.+++..|.++ ..+..++-++..+- .
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 3456789999999997665444443377999999999 87766665433210 0
Q ss_pred CcE-EEEEccccccc-CC-----CCceeEEEEcccccc-ccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 171 NVI-TVLKGKIEEIE-LP-----VTKVDIIISEWMGYF-LLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 171 ~~i-~~~~~d~~~~~-~~-----~~~~D~Iv~~~~~~~-l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
..| .++..|+.+.. +. +++||+|++...... ..........++.+.++|||||.+|.
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 113 37778887643 21 135999998543322 23445667888999999999999984
No 249
>PHA01634 hypothetical protein
Probab=97.78 E-value=0.0001 Score=59.09 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=57.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
...+++|+|||++.|-.++.++-.|+++|+++|+++ ..+..+++++.+.+-++..... +++-.-+.||+.+..
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW~~~Y~~~Di~~iD 99 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EWNGEYEDVDIFVMD 99 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----cccccCCCcceEEEE
Confidence 357899999999999999999999999999999999 9999999998876544332222 222234789998863
No 250
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.73 E-value=0.0005 Score=63.89 Aligned_cols=104 Identities=15% Similarity=0.236 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCCc-HHHHHHHH-cC-CCeEEEEechH-HHHHHHHHHH-HcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 122 KDKVVLDVGAGTG-ILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVE-ANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G-~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
.+.+|+=||||.= ..++.+++ .| ...|+++|+++ .++.+++.+. ..+++.+++|+.+|..+.......||+|+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 3469999999986 44556665 33 34899999999 9999999888 5677888999999998776544789999864
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+- ......-..++..+.+.++||+.++.
T Consensus 200 alV--g~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 200 ALV--GMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp TT---S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred hhc--ccccchHHHHHHHHHhhCCCCcEEEE
Confidence 321 11223567899999999999998874
No 251
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.73 E-value=0.00016 Score=68.32 Aligned_cols=95 Identities=20% Similarity=0.209 Sum_probs=74.8
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccc
Q 015534 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 202 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l 202 (405)
...+|+|.|.|.++..+... +.+|-++++.. .+..++..+. .| |+.+-+|+.+- .| +.|+|++-|+.+.+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P--~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TP--KGDAIWMKWILHDW 249 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CC--CcCeEEEEeecccC
Confidence 68999999999998888884 56899999988 6655555543 33 78888998776 43 56799998886666
Q ss_pred cChhhHHHHHHHHHhcccCCcEEEec
Q 015534 203 LFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.. ++.-+++++++..|+|||.||.-
T Consensus 250 tD-edcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 250 TD-EDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred Ch-HHHHHHHHHHHHhCCCCCEEEEE
Confidence 44 46679999999999999998753
No 252
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.73 E-value=0.0006 Score=65.04 Aligned_cols=113 Identities=15% Similarity=0.091 Sum_probs=74.0
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc----C-CCeEEEEechH-HHHHHHHHHHHcCCCC-cEEEEEcccccc
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA----G-AAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEI 183 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~----g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~ 183 (405)
...|... ..++..++|+|||+|.-+..+.++ + ..+++++|+|. +++.+.+.+....++. .+.-+.+|..+.
T Consensus 67 ~~~Ia~~--i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 67 SSDIAAS--IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHHh--cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 3444432 346678999999999765554441 1 34799999999 9999999888444432 234488888663
Q ss_pred c--CC----CCceeEEEEcccccccc--ChhhHHHHHHHHHh-cccCCcEEEe
Q 015534 184 E--LP----VTKVDIIISEWMGYFLL--FENMLNTVLYARDK-WLVDDGIVLP 227 (405)
Q Consensus 184 ~--~~----~~~~D~Iv~~~~~~~l~--~~~~~~~~l~~~~~-~LkpgG~lip 227 (405)
. ++ .....+++. +|+.+. .......+++.+.+ .|+|||.++.
T Consensus 145 l~~l~~~~~~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred HhhcccccccCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 1 11 134566665 232222 23455688889988 9999999875
No 253
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.68 E-value=3.1e-05 Score=70.96 Aligned_cols=96 Identities=18% Similarity=0.079 Sum_probs=76.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
..+..+||+|||.|-.... .+...++++|.+. .+..|++. +...+..+|+..++.+..+||.+++..+.
T Consensus 44 ~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiavi 113 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAVI 113 (293)
T ss_pred CCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhhh
Confidence 3488999999999954321 2445799999999 88887753 21267889999999888999999997777
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+++.....-..+++++.+.|+|||..+
T Consensus 114 hhlsT~~RR~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 114 HHLSTRERRERALEELLRVLRPGGNAL 140 (293)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCceE
Confidence 777776677789999999999999876
No 254
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00064 Score=59.22 Aligned_cols=102 Identities=23% Similarity=0.226 Sum_probs=75.6
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDI 192 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~ 192 (405)
..+.+|.+||=+|+-+|......+. .|...|+|||.|+ +....-..+.+. +++--+.+|+..-. .--+.+|+
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccccE
Confidence 4578899999999999999999988 6777999999999 655554444443 45777778876432 11367999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+.+.. ......-+...+..+||+||.++.
T Consensus 149 iy~DVA-----Qp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 149 IYQDVA-----QPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred EEEecC-----CchHHHHHHHHHHHhcccCCeEEE
Confidence 998642 234556677888999999997663
No 255
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.61 E-value=0.0002 Score=63.37 Aligned_cols=84 Identities=21% Similarity=0.203 Sum_probs=65.4
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCC---CCceeEEEEccccc
Q 015534 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIISEWMGY 200 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Iv~~~~~~ 200 (405)
.++|||||=+...... ..+.-.|++||+++ ..-.+.+.|+.+.++| .++||+|++.++..
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns---------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNS---------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCC---------------CCCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 6999999986543322 34455799999976 1234677888887764 57999999999888
Q ss_pred cccChhhHHHHHHHHHhcccCCcE
Q 015534 201 FLLFENMLNTVLYARDKWLVDDGI 224 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~ 224 (405)
++.....--.++..+.++|+|+|.
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCc
Confidence 887777777899999999999998
No 256
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.60 E-value=2.1e-05 Score=68.39 Aligned_cols=106 Identities=25% Similarity=0.210 Sum_probs=70.0
Q ss_pred HHHHHHHhccC--CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015534 109 SYQNVIYQNKF--LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 109 ~~~~~i~~~~~--~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (405)
.|.+.+.-..+ ...+.++||+|+|.|-++..++.. ..+|+|.|.|. |....++. +. .++ ...+..-
T Consensus 97 QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~y----nVl--~~~ew~~ 165 (288)
T KOG3987|consen 97 QFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NY----NVL--TEIEWLQ 165 (288)
T ss_pred HHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CC----cee--eehhhhh
Confidence 45554443222 234479999999999999998886 56899999999 98877653 21 111 1111212
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccC-CcEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVD-DGIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkp-gG~lip~ 228 (405)
.+-++|+|.|- ..+..-.++-+++..++.+|.| +|++|.+
T Consensus 166 t~~k~dli~cl---NlLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 166 TDVKLDLILCL---NLLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred cCceeehHHHH---HHHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 23579999982 2233334566888999999999 8887754
No 257
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.58 E-value=0.00026 Score=58.68 Aligned_cols=80 Identities=23% Similarity=0.322 Sum_probs=57.4
Q ss_pred eEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEccccccccCh-------hhHHHHHHHHH
Q 015534 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFE-------NMLNTVLYARD 216 (405)
Q Consensus 147 ~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~~~~~l~~~-------~~~~~~l~~~~ 216 (405)
+|+|.|+-+ +++..++++...++.+++++++..-+.+. .+.+++|+++.|. ||...+. ...-..++.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 699999999 99999999999999889999999888776 3324899999884 5533221 12235667777
Q ss_pred hcccCCcEEEe
Q 015534 217 KWLVDDGIVLP 227 (405)
Q Consensus 217 ~~LkpgG~lip 227 (405)
++|+|||+++.
T Consensus 80 ~lL~~gG~i~i 90 (140)
T PF06962_consen 80 ELLKPGGIITI 90 (140)
T ss_dssp HHEEEEEEEEE
T ss_pred HhhccCCEEEE
Confidence 99999999874
No 258
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.40 E-value=0.0011 Score=62.50 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=64.7
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCc
Q 015534 117 NKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTK 189 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~ 189 (405)
.....++..++|.=+|.|..+..+++. +..+|+|+|.++ +++.|++.+... .+++++++++..++. .+..+
T Consensus 15 ~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~~~~ 92 (305)
T TIGR00006 15 GLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELLVTK 92 (305)
T ss_pred hcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcCCCc
Confidence 344568889999999999999999984 447999999999 999999988754 368999999998764 13357
Q ss_pred eeEEEEcc
Q 015534 190 VDIIISEW 197 (405)
Q Consensus 190 ~D~Iv~~~ 197 (405)
+|.|+.++
T Consensus 93 vDgIl~DL 100 (305)
T TIGR00006 93 IDGILVDL 100 (305)
T ss_pred ccEEEEec
Confidence 99999864
No 259
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.39 E-value=0.00073 Score=66.09 Aligned_cols=99 Identities=23% Similarity=0.238 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCC-cEEEEEcccccccC-CCCceeEEEEc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIEL-PVTKVDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~-~~~~~D~Iv~~ 196 (405)
.+.+|||.=+|+|.=++..+.. |..+|++-|+|+ .++.++++++.|++.+ ++++.+.|+..+-. ....||+|=.+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4568999999999888888774 678999999999 9999999999999987 79999999988742 34899999988
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++| .+..+++.+.+.++.||.+..
T Consensus 129 PfG-------Sp~pfldsA~~~v~~gGll~v 152 (377)
T PF02005_consen 129 PFG-------SPAPFLDSALQAVKDGGLLCV 152 (377)
T ss_dssp -SS---------HHHHHHHHHHEEEEEEEEE
T ss_pred CCC-------CccHhHHHHHHHhhcCCEEEE
Confidence 763 455678888889999999874
No 260
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.0018 Score=60.10 Aligned_cols=101 Identities=21% Similarity=0.179 Sum_probs=66.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEE---EEE---------------------
Q 015534 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVIT---VLK--------------------- 177 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~---~~~--------------------- 177 (405)
..+||--|||.|.++..++..|. .+-|-|.|- |+-...=.+..-..++.++ |++
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 45899999999999999999987 777779998 7644333332111112222 111
Q ss_pred ---------------cccccccC---CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 178 ---------------GKIEEIEL---PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 178 ---------------~d~~~~~~---~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
||+.+.-- ..+.||+|+.. +++.....+-..++.+.++|||||+.|-
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc---fFIDTa~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC---FFIDTAHNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEE---EEeechHHHHHHHHHHHHhccCCcEEEe
Confidence 22222211 12469999985 3455556777899999999999999873
No 261
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.37 E-value=0.0014 Score=63.31 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=84.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH--cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCcee
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVD 191 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D 191 (405)
....+|.+|||..+-.|.=+..+|. .+-..|+|.|.+. -+...++++.+.|+. +..+...|..+++ ++ ++||
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~-~~fD 314 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFP-GSFD 314 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccC-cccc
Confidence 3467899999999999977777766 3456899999999 999999999999985 4667778887664 44 4899
Q ss_pred EEEEcccccc--ccC-----------------hhhHHHHHHHHHhcccCCcEEEecCceeE
Q 015534 192 IIISEWMGYF--LLF-----------------ENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (405)
Q Consensus 192 ~Iv~~~~~~~--l~~-----------------~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (405)
-|+....... +.. ......++.....++++||+++-+++++-
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 9997532222 111 11224667777799999999998776543
No 262
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.0018 Score=55.68 Aligned_cols=97 Identities=23% Similarity=0.321 Sum_probs=63.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEc-cccccc--------CCC
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKG-KIEEIE--------LPV 187 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~--------~~~ 187 (405)
-+.++.+|||+||..|.++..+.+. +...|.|||+-. + ... ..++++.+ |+++-. +|.
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh--------~--~p~-~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH--------I--EPP-EGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee--------c--cCC-CCcccccccccCCHHHHHHHHHhCCC
Confidence 4578999999999999999999883 567899999854 1 111 22556665 665532 466
Q ss_pred CceeEEEEcccccc-----ccChhhHH---HHHHHHHhcccCCcEEE
Q 015534 188 TKVDIIISEWMGYF-----LLFENMLN---TVLYARDKWLVDDGIVL 226 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~-----l~~~~~~~---~~l~~~~~~LkpgG~li 226 (405)
.++|+|++++.... ..|...++ .++.-....++|+|.++
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 89999999764321 11222221 22333346778999887
No 263
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.24 E-value=0.0025 Score=57.88 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=59.3
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (405)
.+.+.+.+.. ...+..+|+|||||.=.+++..... +...++|+|++. +++.....+...+.+ .++...|...-+
T Consensus 92 Ld~fY~~if~--~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 92 LDEFYDEIFG--RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP 167 (251)
T ss_dssp HHHHHHHHCC--CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH
T ss_pred HHHHHHHHHh--cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC
Confidence 3445555543 2445789999999999888887764 345999999999 999999999988865 666777776654
Q ss_pred CCCCceeEEEE
Q 015534 185 LPVTKVDIIIS 195 (405)
Q Consensus 185 ~~~~~~D~Iv~ 195 (405)
.+ ...|+.+.
T Consensus 168 ~~-~~~DlaLl 177 (251)
T PF07091_consen 168 PK-EPADLALL 177 (251)
T ss_dssp TT-SEESEEEE
T ss_pred CC-CCcchhhH
Confidence 43 78999986
No 264
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.24 E-value=0.00097 Score=60.31 Aligned_cols=81 Identities=25% Similarity=0.216 Sum_probs=50.1
Q ss_pred cCCCCC--CEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHH---HHcCC-----CCcEEEEEccccccc-C
Q 015534 118 KFLFKD--KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIV---EANGF-----SNVITVLKGKIEEIE-L 185 (405)
Q Consensus 118 ~~~~~~--~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~---~~~~~-----~~~i~~~~~d~~~~~-~ 185 (405)
..+.++ .+|||.=+|-|.-++.++..|+ +|+++|-|| +..+.+.-+ ....- ..+|+++++|..++. .
T Consensus 69 ~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~ 147 (234)
T PF04445_consen 69 VGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ 147 (234)
T ss_dssp TT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC
T ss_pred hCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh
Confidence 444454 4899999999999999999887 899999999 766555332 22221 147999999998853 3
Q ss_pred CCCceeEEEEcccc
Q 015534 186 PVTKVDIIISEWMG 199 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~ 199 (405)
+..+||+|+.++|.
T Consensus 148 ~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 148 PDNSFDVVYFDPMF 161 (234)
T ss_dssp HSS--SEEEE--S-
T ss_pred cCCCCCEEEECCCC
Confidence 45899999999874
No 265
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.22 E-value=0.0001 Score=67.80 Aligned_cols=95 Identities=24% Similarity=0.292 Sum_probs=75.5
Q ss_pred CCCEEEEEcCCCcHHHH-HHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 122 KDKVVLDVGAGTGILSL-FCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~-~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.+..|.|+=+|-|.+++ ++..+|++.|+|+|.+| .++..+..++.|+..+++.++.+|-....+. ...|-|...++
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~-~~AdrVnLGLl- 271 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPR-LRADRVNLGLL- 271 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCcc-ccchheeeccc-
Confidence 45789999999999999 88889999999999999 9999999999999888888888888776554 88999987443
Q ss_pred ccccChhhHHHHHHHHHhcccCCcE
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGI 224 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~ 224 (405)
...+..++... ++|||.|-
T Consensus 272 --PSse~~W~~A~----k~Lk~egg 290 (351)
T KOG1227|consen 272 --PSSEQGWPTAI----KALKPEGG 290 (351)
T ss_pred --cccccchHHHH----HHhhhcCC
Confidence 22344444433 56777443
No 266
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.18 E-value=0.014 Score=52.90 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=63.7
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC--CCce
Q 015534 115 YQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKV 190 (405)
Q Consensus 115 ~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~ 190 (405)
........|++||-||-+- ..++.++- ...++|+.+|+++ +++..++.+.+.|++ |+.++.|+.+-..+ .++|
T Consensus 37 ~~~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~f 113 (243)
T PF01861_consen 37 MAERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKF 113 (243)
T ss_dssp HHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-B
T ss_pred HHhcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCC
Confidence 3335557899999999766 55555555 4467999999999 999999999999986 99999999764222 3899
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCc
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDG 223 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG 223 (405)
|++++++. +- ...+.-++......||..|
T Consensus 114 D~f~TDPP-yT---~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 114 DVFFTDPP-YT---PEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp SEEEE----SS---HHHHHHHHHHHHHTB-STT
T ss_pred CEEEeCCC-CC---HHHHHHHHHHHHHHhCCCC
Confidence 99999885 22 2566778888888888666
No 267
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.16 E-value=0.003 Score=58.18 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=66.0
Q ss_pred CEEEEEcCCCc--HHHHHHHH--cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----------CC-
Q 015534 124 KVVLDVGAGTG--ILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----------LP- 186 (405)
Q Consensus 124 ~~VLDiGcG~G--~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~- 186 (405)
...||||||-= .....+|+ .+..+|+.||.+| .+..++..+..+.- .+..++.+|+.+.. +.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 57999999953 34455555 5667999999999 99999998877642 34899999997642 11
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.++=+++... .+++..+..+..++..+...|.||..++.+.
T Consensus 149 ~rPVavll~~v-Lh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 149 DRPVAVLLVAV-LHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp TS--EEEECT--GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CCCeeeeeeee-eccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 24555555544 4667676788999999999999999998654
No 268
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.03 E-value=0.0047 Score=54.72 Aligned_cols=121 Identities=17% Similarity=0.265 Sum_probs=63.7
Q ss_pred hhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH----c-CCCeEEEEechH-HHHHHHHHHHHcCCCCcE
Q 015534 100 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (405)
Q Consensus 100 ~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~----~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (405)
+++.....-.|.+.|.+ .++..|+|+|.-.|.-+++.|. . +..+|+|||++. .... +..+..++.++|
T Consensus 14 i~q~P~Dm~~~qeli~~----~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI 87 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWE----LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRI 87 (206)
T ss_dssp ESS-HHHHHHHHHHHHH----H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTE
T ss_pred hhcCHHHHHHHHHHHHH----hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCce
Confidence 34444445556666654 3567999999999988777765 2 457999999964 3221 112334555789
Q ss_pred EEEEccccccc-------C-CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 174 TVLKGKIEEIE-------L-PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 174 ~~~~~d~~~~~-------~-~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
+++.||..+.. . ......+|+-+.- -.+ ..+-..+.....++++|+++|..+.
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~---H~~-~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDSS---HTH-EHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS--------SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECCC---ccH-HHHHHHHHHhCccCCCCCEEEEEec
Confidence 99999997653 1 1234556665421 112 3445666778899999999987653
No 269
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0022 Score=60.41 Aligned_cols=115 Identities=17% Similarity=0.061 Sum_probs=67.2
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCC--
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP-- 186 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g-~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-- 186 (405)
.+.+.........++|||+|.|.|.-...+-. .+ .+.++.++.|+.+...-.-+..+-...+......|+..-.++
T Consensus 102 L~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp 181 (484)
T COG5459 102 LDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP 181 (484)
T ss_pred HHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC
Confidence 34444445566778899999999876555544 33 457889999994433333344443333333444444333222
Q ss_pred -CCceeEEEEcccccccc---ChhhHHHHHHHHHhcccCCcEEEec
Q 015534 187 -VTKVDIIISEWMGYFLL---FENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 187 -~~~~D~Iv~~~~~~~l~---~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
...|++++. .+-+. .+..+...++.+..++.|||.++..
T Consensus 182 ~ad~ytl~i~---~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 182 AADLYTLAIV---LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred ccceeehhhh---hhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 245666664 22222 2344556788888999999987743
No 270
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.89 E-value=0.0015 Score=64.75 Aligned_cols=99 Identities=17% Similarity=0.169 Sum_probs=64.4
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCC--eEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccc
Q 015534 124 KVVLDVGAGTGILSLFCAKAGAA--HVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g~~--~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (405)
..|+|..+|.|.++..|...+.- .|+-++-...+.. +-..|+ |-+.+.-.+.++.-+.+||+|.++.+...
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~v----IydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPV----IYDRGL---IGVYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCCcchh----hhhccc---chhccchhhccCCCCcchhheehhhhhhh
Confidence 58999999999999999887531 2222211112222 222343 33344333445433589999999766554
Q ss_pred ccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 202 LLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
..+.-.+..++-++.|+|+|||.+|+.+
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEec
Confidence 4444567889999999999999998754
No 271
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.84 E-value=0.0046 Score=53.95 Aligned_cols=105 Identities=18% Similarity=0.179 Sum_probs=64.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcC-------CCCcEEEEEccccccc---CCCCc
Q 015534 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANG-------FSNVITVLKGKIEEIE---LPVTK 189 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~-------~~~~i~~~~~d~~~~~---~~~~~ 189 (405)
+.-.+.|||||.|.+.+.++. .+..-+.|+|+-. ..++.++++.+.+ + .++.+...+...+. +..++
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~-~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQY-PNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccc-ccceeeeccchhhccchhhhcc
Confidence 334689999999999999998 5677899999999 9999988887764 3 23566665554432 11122
Q ss_pred eeEEE-Eccccccc--cCh--hhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIII-SEWMGYFL--LFE--NMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv-~~~~~~~l--~~~--~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+-.+ +-+=.++- .+. -.-..++....-+|++||.++.
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT 181 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence 11111 10000000 000 0113566677788999998873
No 272
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.63 E-value=0.013 Score=53.66 Aligned_cols=101 Identities=19% Similarity=0.232 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHc-----CCCCcEEEEEccccccc---CCCCc-eeE
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEAN-----GFSNVITVLKGKIEEIE---LPVTK-VDI 192 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~---~~~~~-~D~ 192 (405)
...+||++|+|+|..++.+|..+...|.-.|....+...+.+...+ ++...+.+...+..... +-.+. +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 4568999999999999999886666999999887444443333322 33334555544443322 11133 999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEE
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (405)
|++.-+ ...+.....+...++.+|..+|.+
T Consensus 166 ilasDv---vy~~~~~e~Lv~tla~ll~~~~~i 195 (248)
T KOG2793|consen 166 ILASDV---VYEEESFEGLVKTLAFLLAKDGTI 195 (248)
T ss_pred EEEeee---eecCCcchhHHHHHHHHHhcCCeE
Confidence 998544 334456667777777888888843
No 273
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.41 E-value=0.0087 Score=56.15 Aligned_cols=96 Identities=26% Similarity=0.245 Sum_probs=64.8
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc--ccccc------CC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK--IEEIE------LP 186 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d--~~~~~------~~ 186 (405)
.....|.+||-+|+|. |.++...|+ .|+++|+.+|+++ -++.|++ + |.. .+...... ..++. +.
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~-~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GAT-VTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCe-EEeeccccccHHHHHHHHHhhcc
Confidence 4567899999999998 888988888 7999999999999 9999998 3 321 12111111 11110 22
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
...+|+.+.-. ..+..++.....+++||.++.
T Consensus 240 ~~~~d~~~dCs---------G~~~~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 240 KKQPDVTFDCS---------GAEVTIRAAIKATRSGGTVVL 271 (354)
T ss_pred ccCCCeEEEcc---------CchHHHHHHHHHhccCCEEEE
Confidence 34588888521 223445555678899999764
No 274
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.41 E-value=0.0025 Score=58.74 Aligned_cols=108 Identities=20% Similarity=0.281 Sum_probs=63.7
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHH-------HHHHH--HcCCCCcEEEEEcccccccC-C
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMA-------KQIVE--ANGFSNVITVLKGKIEEIEL-P 186 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a-------~~~~~--~~~~~~~i~~~~~d~~~~~~-~ 186 (405)
.-...+++|||+|||.|..++.+...|+..|...|.|. .++.- ...+. .+....-..+.+....+..+ .
T Consensus 112 ~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~ 191 (282)
T KOG2920|consen 112 QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNH 191 (282)
T ss_pred heEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhh
Confidence 34567899999999999999999998888999999988 66211 11111 11111112333331111111 1
Q ss_pred CC--ceeEEEEccccccccChhhHHHH-HHHHHhcccCCcEEEec
Q 015534 187 VT--KVDIIISEWMGYFLLFENMLNTV-LYARDKWLVDDGIVLPD 228 (405)
Q Consensus 187 ~~--~~D~Iv~~~~~~~l~~~~~~~~~-l~~~~~~LkpgG~lip~ 228 (405)
.+ .||+|.+.-..+. +...+.+ ...+..+++++|+++..
T Consensus 192 t~~~~ydlIlsSetiy~---~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYS---IDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccccchhhhhhhhhhhC---cchhhhhHhhhhhhcCCccchhhhh
Confidence 13 7888887443332 2344444 55666788899987643
No 275
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.40 E-value=0.023 Score=54.42 Aligned_cols=92 Identities=27% Similarity=0.259 Sum_probs=62.2
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc-cccccCCCCceeEE
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-IEEIELPVTKVDII 193 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~D~I 193 (405)
....+|.+|+-+|+|- |.++..+|+ .| .+|+++|.++ -.+.|++.-. -.++... ......-.+.||+|
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~~~~~d~i 233 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAVKEIADAI 233 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHhHhhCcEE
Confidence 4567899999999982 477888888 67 5999999999 8988887633 2334432 22221111349999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+... . +..+....+.|++||.++.
T Consensus 234 i~tv--------~--~~~~~~~l~~l~~~G~~v~ 257 (339)
T COG1064 234 IDTV--------G--PATLEPSLKALRRGGTLVL 257 (339)
T ss_pred EECC--------C--hhhHHHHHHHHhcCCEEEE
Confidence 9632 1 2334445588999999874
No 276
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.32 E-value=0.014 Score=55.80 Aligned_cols=98 Identities=21% Similarity=0.173 Sum_probs=78.0
Q ss_pred CCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEcccc
Q 015534 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMG 199 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~ 199 (405)
..+|||.=+|+|+=++..+. .+..+|+.-|+|| .++.+++++..|.. ....+++.|+..+-.. ...||+|=.++++
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDiDPFG 131 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDIDPFG 131 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEecCCCC
Confidence 77999999999999998888 5555999999999 99999999999944 3467777888776432 3789999988764
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+.-++++..+.++.||.+...
T Consensus 132 -------SPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 132 -------SPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred -------CCchHHHHHHHHhhcCCEEEEE
Confidence 3345677777888889988754
No 277
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.29 E-value=0.0091 Score=58.16 Aligned_cols=95 Identities=31% Similarity=0.331 Sum_probs=62.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc-c-ccc-cCC-CCceeE
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-I-EEI-ELP-VTKVDI 192 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~-~~~-~~~-~~~~D~ 192 (405)
..++.+|+-+|||. |+++..+++ .|+.+|+++|.++ -++.|++..... .+.....+ . ... ... ...+|+
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCE
Confidence 34455999999998 888888888 7899999999999 999998754321 11111111 1 001 122 237999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++-.. + .+..+..+.++++|||.++.
T Consensus 242 vie~~-G--------~~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 242 VIEAV-G--------SPPALDQALEALRPGGTVVV 267 (350)
T ss_pred EEECC-C--------CHHHHHHHHHHhcCCCEEEE
Confidence 98421 1 23355666689999999874
No 278
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.29 E-value=0.016 Score=50.40 Aligned_cols=111 Identities=16% Similarity=0.142 Sum_probs=72.1
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH-cCC-CeEEEEechHHHH-------HHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGA-AHVYAVECSQMAN-------MAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~-~g~-~~V~~vD~s~~~~-------~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
..++++.+|+|+=.|.|.++..++. .|. ..|++.=..+... ..+....+... .+++.+..+...+. +.+
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~-~pq 121 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALG-APQ 121 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccC-CCC
Confidence 5678999999999999999999998 343 3777765544111 11111111222 23666666666665 337
Q ss_pred ceeEEEEcccccc----ccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 189 KVDIIISEWMGYF----LLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 189 ~~D~Iv~~~~~~~----l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
..|++......+. ..+......+..++.+.|||||+++..++
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 7788776432222 23455667888999999999999886554
No 279
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.28 E-value=0.0068 Score=56.97 Aligned_cols=66 Identities=26% Similarity=0.340 Sum_probs=53.2
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC--CCceeEEEEcc
Q 015534 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEW 197 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~Iv~~~ 197 (405)
+|+|+.||.|.++..+.++|...|.++|+++ .++..+.+... .++.+|+.++... ...+|+|+..+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCC
Confidence 6999999999999999999998999999999 88887776531 2567788776532 25799999864
No 280
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.28 E-value=0.016 Score=51.97 Aligned_cols=105 Identities=20% Similarity=0.230 Sum_probs=67.4
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHH-cC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCc
Q 015534 116 QNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTK 189 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGcG~G~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~ 189 (405)
.+.++.++.+||=||+++|......+. -| ..-|||||.|+ .=...-..+.+. .+|--+.-|+..-. ..-+-
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRmlVgm 226 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRMLVGM 226 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeeeeee
Confidence 346788999999999999988777777 33 45899999997 443333322222 23444555654321 11246
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|+|+++.. .+.....+.-....+||+||-++.+
T Consensus 227 VDvIFaDva-----qpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 227 VDVIFADVA-----QPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred EEEEeccCC-----CchhhhhhhhhhhhhhccCCeEEEE
Confidence 888887542 2233344445667899999998854
No 281
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.26 E-value=0.019 Score=51.29 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCCcHHHHHH--HHcCCCeEEEEechH-HHHHHHHHHHHc-CCCCcEEEEEcccccccCC-----CCceeE
Q 015534 122 KDKVVLDVGAGTGILSLFC--AKAGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGKIEEIELP-----VTKVDI 192 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~l--a~~g~~~V~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~-----~~~~D~ 192 (405)
++.++||||.|.-.+=-.+ .++|. +.+|.|+++ .++.|+.++..| ++...|+++...=.+-.++ .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 4568999999986332222 22555 899999999 999999999999 7777777766443332222 589999
Q ss_pred EEEccc
Q 015534 193 IISEWM 198 (405)
Q Consensus 193 Iv~~~~ 198 (405)
..|++.
T Consensus 157 tlCNPP 162 (292)
T COG3129 157 TLCNPP 162 (292)
T ss_pred EecCCC
Confidence 999985
No 282
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.26 E-value=0.0067 Score=53.95 Aligned_cols=92 Identities=23% Similarity=0.238 Sum_probs=63.3
Q ss_pred CEEEEEcCCCcHHHHHHHHcC--------C--CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccccc--------C
Q 015534 124 KVVLDVGAGTGILSLFCAKAG--------A--AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------L 185 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g--------~--~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~ 185 (405)
.+|+|+.+-.|.++..+++.- . +++++||+.+|+. + ..|.-+++|++... +
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----------I-~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----------I-EGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----------c-CceEEeecccCCHhHHHHHHHHh
Confidence 589999999999999998831 1 1499999987543 2 23777889987753 4
Q ss_pred CCCceeEEEEcccccc--ccC--h----hhHHHHHHHHHhcccCCcEEE
Q 015534 186 PVTKVDIIISEWMGYF--LLF--E----NMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~--l~~--~----~~~~~~l~~~~~~LkpgG~li 226 (405)
..++.|+|||+..... ++. | ..+-..+.-...+|||||.++
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 5579999999753321 211 1 112234444568999999987
No 283
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.13 E-value=0.032 Score=56.70 Aligned_cols=96 Identities=22% Similarity=0.274 Sum_probs=61.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc-----------cc-
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-----------IE- 184 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-----------~~- 184 (405)
..++.+|+-+|||. |..++.+|+ .|+ .|+++|.++ -++.+++. |. +++..+..+ +.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----GA----~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----GA----EFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC----eEEEeccccccccccchhhhcch
Confidence 45789999999998 788888888 687 899999999 88887763 31 221111100 00
Q ss_pred ---------CC--CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 185 ---------LP--VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 ---------~~--~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+. ...+|+|+.... ......+..+.+...+.+||||+++.
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag---~pg~~aP~lit~~~v~~mkpGgvIVd 283 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTAL---IPGKPAPKLITAEMVASMKPGSVIVD 283 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCC---CCcccCcchHHHHHHHhcCCCCEEEE
Confidence 01 146999997321 11111222334777789999999874
No 284
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.96 E-value=0.03 Score=54.25 Aligned_cols=96 Identities=17% Similarity=0.244 Sum_probs=58.6
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
...++.+||-+|||. |.++..+++ .|+.+|+++|.++ -++.|++. |...-+.....+..++....+.+|+|+-
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D~vid 241 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFDVSFE 241 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCCEEEE
Confidence 345788999999875 667777777 6777899999999 88877653 3211111111122222111245899985
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.. + . +..+....++|++||+++.
T Consensus 242 ~~-G-------~-~~~~~~~~~~l~~~G~iv~ 264 (343)
T PRK09880 242 VS-G-------H-PSSINTCLEVTRAKGVMVQ 264 (343)
T ss_pred CC-C-------C-HHHHHHHHHHhhcCCEEEE
Confidence 21 1 1 1234455678899999874
No 285
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.93 E-value=0.14 Score=45.39 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=65.7
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cC--CCeEEEEechH-HHHHHHHHHHH-----------------
Q 015534 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECSQ-MANMAKQIVEA----------------- 166 (405)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g--~~~V~~vD~s~-~~~~a~~~~~~----------------- 166 (405)
+.+.+++.. .....+-++.|-.||.|.+.-.+.- ++ ...|+|.|+++ ++++|++|+.-
T Consensus 38 Ei~qR~l~~-l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~ 116 (246)
T PF11599_consen 38 EIFQRALHY-LEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELY 116 (246)
T ss_dssp HHHHHHHCT-SSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-hcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHH
Confidence 344444432 3334556899999999977655554 22 46899999999 99999998621
Q ss_pred ------------------------cCCCCcEEEEEcccccc------cCCCCceeEEEEccc-cccccC-----hhhHHH
Q 015534 167 ------------------------NGFSNVITVLKGKIEEI------ELPVTKVDIIISEWM-GYFLLF-----ENMLNT 210 (405)
Q Consensus 167 ------------------------~~~~~~i~~~~~d~~~~------~~~~~~~D~Iv~~~~-~~~l~~-----~~~~~~ 210 (405)
.|-.....+.+.|+++. ... ...|+|+.+.. +....+ ......
T Consensus 117 e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~-~~~diViTDlPYG~~t~W~g~~~~~p~~~ 195 (246)
T PF11599_consen 117 EQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAG-FTPDIVITDLPYGEMTSWQGEGSGGPVAQ 195 (246)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT----SEEEEE--CCCSSSTTS---HHHHHH
T ss_pred HHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccC-CCCCEEEecCCCcccccccCCCCCCcHHH
Confidence 11122367888888762 222 45799999642 121222 234678
Q ss_pred HHHHHHhcccCCcEEE
Q 015534 211 VLYARDKWLVDDGIVL 226 (405)
Q Consensus 211 ~l~~~~~~LkpgG~li 226 (405)
++..+..+|-+++++.
T Consensus 196 ml~~l~~vLp~~sVV~ 211 (246)
T PF11599_consen 196 MLNSLAPVLPERSVVA 211 (246)
T ss_dssp HHHHHHCCS-TT-EEE
T ss_pred HHHHHHhhCCCCcEEE
Confidence 9999999995444444
No 286
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=95.91 E-value=0.0065 Score=57.25 Aligned_cols=80 Identities=24% Similarity=0.228 Sum_probs=64.5
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHH-------HHHHHHHHcCCC-CcEEEEEcccccccCC-C
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MAN-------MAKQIVEANGFS-NVITVLKGKIEEIELP-V 187 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~-------~a~~~~~~~~~~-~~i~~~~~d~~~~~~~-~ 187 (405)
....+|+.|+|--.|||.+...+|+.|+ .|+|.|++- ++. -.+.++++.|.. .-+.++.+|...-+.. .
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn 282 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSN 282 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhc
Confidence 4568999999999999999999999988 999999999 776 346778888843 3356778888766543 4
Q ss_pred CceeEEEEccc
Q 015534 188 TKVDIIISEWM 198 (405)
Q Consensus 188 ~~~D~Iv~~~~ 198 (405)
..||.|||++.
T Consensus 283 ~~fDaIvcDPP 293 (421)
T KOG2671|consen 283 LKFDAIVCDPP 293 (421)
T ss_pred ceeeEEEeCCC
Confidence 68999999873
No 287
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.88 E-value=0.065 Score=50.02 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=66.2
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L 185 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~ 185 (405)
+...+...++...+|.--|.|..+..+.+.. ..+++|+|.++ +++.|++.+...+ ++++++++.+.++. .
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~ 92 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL 92 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc
Confidence 3344567788999999999999999999853 36799999999 9999999998766 78999999987764 2
Q ss_pred CCCceeEEEEc
Q 015534 186 PVTKVDIIISE 196 (405)
Q Consensus 186 ~~~~~D~Iv~~ 196 (405)
..+++|-|+.+
T Consensus 93 ~i~~vDGiL~D 103 (314)
T COG0275 93 GIGKVDGILLD 103 (314)
T ss_pred CCCceeEEEEe
Confidence 24688888875
No 288
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.86 E-value=0.031 Score=51.75 Aligned_cols=109 Identities=19% Similarity=0.132 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcC--CC-CcEEEEEccccccc--CCCCceeEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANG--FS-NVITVLKGKIEEIE--LPVTKVDII 193 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~--~~-~~i~~~~~d~~~~~--~~~~~~D~I 193 (405)
...++||-||-|-|......+++. ...+.-+|+.. .++..++.+...- .. .++.++-||...+- .+.++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 456799999999998887777743 56899999999 9999888876532 22 56888889876653 335899999
Q ss_pred EEccccccccChh-hHHHHHHHHHhcccCCcEEEecC
Q 015534 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 194 v~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.+.-.-...... -...+...+.+.||+||+++...
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9854221121111 23456677889999999988543
No 289
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.85 E-value=0.0043 Score=61.21 Aligned_cols=103 Identities=21% Similarity=0.209 Sum_probs=84.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH--cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----CCCceeEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKVDII 193 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~I 193 (405)
.++.+|||.=|++|+-++..|+ -|..+|++-|.++ .++..+++++.|+..+.++..+.|+..+-. ....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 4567999999999999998888 3678999999999 999999999999988888999988866532 24789999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
=.+++| ....+++.+.+.++.||.++....
T Consensus 188 DLDPyG-------s~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 188 DLDPYG-------SPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ecCCCC-------CccHHHHHHHHHhhcCCEEEEEec
Confidence 987763 334677777888899999886543
No 290
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.85 E-value=0.089 Score=53.57 Aligned_cols=112 Identities=17% Similarity=0.045 Sum_probs=75.8
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cC----CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG----AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL- 185 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g----~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~- 185 (405)
.|.......+..+|+|-.||+|.+...+++ .+ ....+|.|+++ ....|+.++--+|+...+...++|...-+.
T Consensus 177 liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~ 256 (489)
T COG0286 177 LIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKH 256 (489)
T ss_pred HHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcc
Confidence 333334445667999999999988777666 22 25699999999 999999999988875335566665544331
Q ss_pred ----CCCceeEEEEccccccccC----------------------hhhHHHHHHHHHhcccCCcE
Q 015534 186 ----PVTKVDIIISEWMGYFLLF----------------------ENMLNTVLYARDKWLVDDGI 224 (405)
Q Consensus 186 ----~~~~~D~Iv~~~~~~~l~~----------------------~~~~~~~l~~~~~~LkpgG~ 224 (405)
..+.||.|++++......+ ...-..++..+...|+|||+
T Consensus 257 ~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~ 321 (489)
T COG0286 257 DDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGR 321 (489)
T ss_pred cccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCce
Confidence 2367999999874331100 01114677788889999774
No 291
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.72 E-value=0.022 Score=53.93 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=56.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-CCCc
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-PVTK 189 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-~~~~ 189 (405)
....++..++|.=-|.|..+..+++ .+..+|+|+|.++ +++.|++++... .+++.++++++.++. . ...+
T Consensus 16 L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~ 93 (310)
T PF01795_consen 16 LNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINK 93 (310)
T ss_dssp HT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-
T ss_pred hCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCc
Confidence 3467888999999999999999998 4558999999999 999998877644 478999999998764 2 3368
Q ss_pred eeEEEEcc
Q 015534 190 VDIIISEW 197 (405)
Q Consensus 190 ~D~Iv~~~ 197 (405)
+|.|+.+.
T Consensus 94 ~dgiL~DL 101 (310)
T PF01795_consen 94 VDGILFDL 101 (310)
T ss_dssp EEEEEEE-
T ss_pred cCEEEEcc
Confidence 99999853
No 292
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.72 E-value=0.081 Score=52.22 Aligned_cols=106 Identities=22% Similarity=0.154 Sum_probs=65.0
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc-ccc-c-c-CCCCce
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-IEE-I-E-LPVTKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~~~-~-~-~~~~~~ 190 (405)
....++.+||.+|||. |.++..+++ .|..+|+++|.++ ..+.+++.. +. ..+.....+ ... + . .....+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCCCC
Confidence 4456788999999988 888888888 6666799999999 988887652 11 112211111 111 1 1 122469
Q ss_pred eEEEEcccccc------------ccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYF------------LLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~------------l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|+...-+.. +....+....+....+.|+++|.++.
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~ 304 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSI 304 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEE
Confidence 99986321100 01111224456777789999999874
No 293
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.64 E-value=0.053 Score=51.93 Aligned_cols=121 Identities=17% Similarity=0.033 Sum_probs=77.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCC-----CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-------
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGA-----AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------- 184 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~-----~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------- 184 (405)
+.+.++.+|||+.+-.|.=+..+.+... ..|+|-|.++ -+......+....- .++.+...|+...+
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence 5678999999999999988877777432 2799999998 77766666644332 33555555554332
Q ss_pred --CCCCceeEEEEccccc--ccc-Ch-----------------hhHHHHHHHHHhcccCCcEEEecCceeEEEEccccc
Q 015534 185 --LPVTKVDIIISEWMGY--FLL-FE-----------------NMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE 241 (405)
Q Consensus 185 --~~~~~~D~Iv~~~~~~--~l~-~~-----------------~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~ 241 (405)
.....||-|+++.... ..+ .. ...-.++....++||+||.++-++++ +.|++.+.
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS--LnpieNEa 306 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS--LNPIENEA 306 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC--CCchhhHH
Confidence 1235799999853211 110 00 01125667777999999999987765 34555443
No 294
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.80 E-value=0.05 Score=42.68 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ 155 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~ 155 (405)
+.....|||||+|.+...|.+.|. .-+|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence 455799999999999999999887 778888743
No 295
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.64 E-value=0.22 Score=43.54 Aligned_cols=97 Identities=24% Similarity=0.293 Sum_probs=62.2
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH-------cC-C--------CCcEEEEEcccccccC
Q 015534 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NG-F--------SNVITVLKGKIEEIEL 185 (405)
Q Consensus 125 ~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~-~--------~~~i~~~~~d~~~~~~ 185 (405)
+|.-||+|+ | .++..++..|. .|+.+|.++ .++.+++.+.. .+ + -.+++ ...|+.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence 477899988 3 56777777876 999999999 99888777654 11 1 12454 33455544
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCce
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
...|+|+=.. ....+.-..++..+.+.+.|+.+|.-++.+
T Consensus 77 --~~adlViEai----~E~l~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 77 --VDADLVIEAI----PEDLELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp --CTESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred --hhhheehhhc----cccHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence 3689998532 223345578999999999999887755443
No 296
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=94.57 E-value=0.56 Score=43.64 Aligned_cols=124 Identities=13% Similarity=0.108 Sum_probs=82.0
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCC--CCcEEEEEccccc
Q 015534 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKIEE 182 (405)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~--~~~i~~~~~d~~~ 182 (405)
.|+..+-+.+.+.... ....|+.+|||-=.-...+......+++=+|..++++.-++.+...+. +.+.+++..|+.+
T Consensus 65 ~Rtr~~D~~i~~~~~~-g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 65 VRTRFFDDFLLAAVAA-GIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ 143 (260)
T ss_pred HHHHHHHHHHHHHHhc-CCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence 4555555555544332 234799999998766655533212467777776677777777776542 3668899999862
Q ss_pred cc--------CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 183 IE--------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 183 ~~--------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
.. +.....-+++++.+..++ .+.....++..+.+...||+.+++...
T Consensus 144 ~w~~~L~~~gfd~~~ptl~i~EGvl~YL-~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 144 DWPAALAAAGFDPTAPTAWLWEGLLMYL-TEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred hHHHHHHhCCCCCCCCeeeeecchhhcC-CHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 11 222456688888877666 456778899999888889999887643
No 297
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.49 E-value=0.25 Score=48.97 Aligned_cols=87 Identities=23% Similarity=0.265 Sum_probs=56.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
..+|++|+-+|+|. |.....+++ .|+ +|+.+|.++ -+..|+. .|. +.+ +..+. . ..+|+|+..
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e~-v--~~aDVVI~a 264 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY----EVM--TMEEA-V--KEGDIFVTT 264 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC----EEc--cHHHH-H--cCCCEEEEC
Confidence 36899999999998 666665666 677 899999999 7766654 342 222 12222 1 457999863
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
. +....+-....+.+|+||+++..
T Consensus 265 t--------G~~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 265 T--------GNKDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred C--------CCHHHHHHHHHhcCCCCcEEEEe
Confidence 2 12222233446889999998743
No 298
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.42 E-value=0.11 Score=52.68 Aligned_cols=94 Identities=20% Similarity=0.263 Sum_probs=59.3
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc---------------
Q 015534 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--------------- 182 (405)
Q Consensus 121 ~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--------------- 182 (405)
.++.+||-+|+|. |..+..+++ .|+ .|+++|.++ .++.+++. |. +++.-+..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~l----Ga----~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSM----GA----EFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC----eEEeccccccccccccceeecCHH
Confidence 4668999999998 677777777 676 799999999 77776652 31 222222211
Q ss_pred --------ccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 183 --------IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 183 --------~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+.-....+|+|+...+ ..+.+.+.-+.++..+.+|||++++
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~Tal---ipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTAL---IPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcc---cCCCCCCeeehHHHHhhCCCCCEEE
Confidence 1101256999987542 1122222234556678899999877
No 299
>PRK11524 putative methyltransferase; Provisional
Probab=94.33 E-value=0.14 Score=48.40 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=41.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA 166 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~ 166 (405)
..+|..|||--||+|..+..+.+.|- +.+|+|+++ .++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 47899999999999999998888855 999999999 99999999864
No 300
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.26 E-value=0.067 Score=51.24 Aligned_cols=64 Identities=36% Similarity=0.437 Sum_probs=52.2
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeEEEEcc
Q 015534 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEW 197 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~Iv~~~ 197 (405)
+++|+-||.|.+++-+.++|...|.++|+++ .++.-+.++. ....+|+.++. ++. .+|+++..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEecc
Confidence 6999999999999999999988999999999 8888777764 67889998876 332 699999853
No 301
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.19 E-value=0.24 Score=47.99 Aligned_cols=90 Identities=12% Similarity=0.079 Sum_probs=55.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH--cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
..++.+||-+|||. |.++..+++ .|+.+|+++|.++ -++.|++ .+. ...+ .++. ....+|+|+-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~~~-~~~g~d~viD 228 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DDIP-EDLAVDHAFE 228 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hhhh-hccCCcEEEE
Confidence 46789999999876 556656555 3667899999999 8887764 121 1111 1111 1124899884
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
. .+ . ...+..+....++|++||+++.
T Consensus 229 ~-~G----~-~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 229 C-VG----G-RGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred C-CC----C-CccHHHHHHHHHhCcCCcEEEE
Confidence 2 11 1 1123445556689999999874
No 302
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=94.12 E-value=0.5 Score=43.47 Aligned_cols=124 Identities=14% Similarity=0.161 Sum_probs=72.0
Q ss_pred HHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH----cC--CCeEEEEechH----------------------
Q 015534 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----AG--AAHVYAVECSQ---------------------- 155 (405)
Q Consensus 104 ~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~----~g--~~~V~~vD~s~---------------------- 155 (405)
..|...+..++.......-+.-|+|+||-.|..++.++. .+ ..++++.|.=+
T Consensus 56 ~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~ 135 (248)
T PF05711_consen 56 RERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYN 135 (248)
T ss_dssp HHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCC
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcc
Confidence 456667777777665444456799999999987765543 22 35788877421
Q ss_pred -----HHHHHHHHHHHcCC-CCcEEEEEcccccccC--CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 156 -----MANMAKQIVEANGF-SNVITVLKGKIEEIEL--PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 156 -----~~~~a~~~~~~~~~-~~~i~~~~~d~~~~~~--~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.++..++++...++ .++++++.|.+.+... +.+++-++..+. =.+ ......+..+...|.|||+||+
T Consensus 136 ~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~----DlY-esT~~aLe~lyprl~~GGiIi~ 210 (248)
T PF05711_consen 136 GYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC----DLY-ESTKDALEFLYPRLSPGGIIIF 210 (248)
T ss_dssp HHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SH-HHHHHHHHHHGGGEEEEEEEEE
T ss_pred cccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEec----cch-HHHHHHHHHHHhhcCCCeEEEE
Confidence 23333444444453 3679999999976532 234444444321 112 2345778888899999999998
Q ss_pred cCcee
Q 015534 228 DKASL 232 (405)
Q Consensus 228 ~~~~~ 232 (405)
.++..
T Consensus 211 DDY~~ 215 (248)
T PF05711_consen 211 DDYGH 215 (248)
T ss_dssp SSTTT
T ss_pred eCCCC
Confidence 87543
No 303
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.06 E-value=0.51 Score=45.58 Aligned_cols=108 Identities=18% Similarity=0.162 Sum_probs=57.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc------------C-----CCeEEEEechH--HHHHHHHHHHH-----cCCCCcEEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA------------G-----AAHVYAVECSQ--MANMAKQIVEA-----NGFSNVITV 175 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~------------g-----~~~V~~vD~s~--~~~~a~~~~~~-----~~~~~~i~~ 175 (405)
....-+|+|+||.+|..++.+... + .-.|+--|.-. .-...+..... ..-+--+..
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 344569999999999888776542 1 02677777533 22222221111 011111334
Q ss_pred EEcccccccCCCCceeEEEEccccccccC------------------------------------hhhHHHHHHHHHhcc
Q 015534 176 LKGKIEEIELPVTKVDIIISEWMGYFLLF------------------------------------ENMLNTVLYARDKWL 219 (405)
Q Consensus 176 ~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~------------------------------------~~~~~~~l~~~~~~L 219 (405)
+.+.+-.-.+|.++.|++++....++|.. ..++..+++.+++-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 55666655678899999998533332211 123457788888999
Q ss_pred cCCcEEEe
Q 015534 220 VDDGIVLP 227 (405)
Q Consensus 220 kpgG~lip 227 (405)
+|||+++.
T Consensus 174 v~GG~mvl 181 (334)
T PF03492_consen 174 VPGGRMVL 181 (334)
T ss_dssp EEEEEEEE
T ss_pred ccCcEEEE
Confidence 99999884
No 304
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.90 E-value=0.18 Score=45.98 Aligned_cols=89 Identities=22% Similarity=0.260 Sum_probs=66.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
.+.+|....|+|+-.|.++..+.+.+- .|++||.-+|....- .. ..|+-...|-..+.......|-.||+++
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~----dt---g~v~h~r~DGfk~~P~r~~idWmVCDmV 279 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLM----DT---GQVTHLREDGFKFRPTRSNIDWMVCDMV 279 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhh----cc---cceeeeeccCcccccCCCCCceEEeehh
Confidence 457889999999999999999999866 999999988543322 22 3488888888777654578999999876
Q ss_pred cccccChhhHHHHHHHHHhcccCC
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDD 222 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~Lkpg 222 (405)
+.+..+-..+..+|..|
T Consensus 280 -------EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 280 -------EKPARVAALIAKWLVNG 296 (358)
T ss_pred -------cCcHHHHHHHHHHHHcc
Confidence 34455555566666554
No 305
>PRK13699 putative methylase; Provisional
Probab=93.84 E-value=0.24 Score=45.04 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=41.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN 167 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~ 167 (405)
..+|..|||--||+|..+..+.+.|- +.+|+|+++ ..+.|.+++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 35888999999999999998888865 899999999 999999888654
No 306
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.80 E-value=0.14 Score=46.10 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=34.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHH
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQ 162 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~ 162 (405)
..+|..|||.-||+|..+..+.+.|- +.+|+|+++ .+++|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 46789999999999999999988865 899999999 9998874
No 307
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=93.75 E-value=0.035 Score=53.88 Aligned_cols=63 Identities=27% Similarity=0.333 Sum_probs=56.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCc-EEEEEcccccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEI 183 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~ 183 (405)
..+|..|-|+-||.|.+++.+++.| ++|++-|.++ ++++.+.++..|.+... |+++..|+.++
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 4688899999999999999999987 5999999999 99999999999988765 89998888665
No 308
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.75 E-value=0.39 Score=47.01 Aligned_cols=94 Identities=22% Similarity=0.223 Sum_probs=57.8
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc----cc-CCCCc
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----IE-LPVTK 189 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~-~~~~~ 189 (405)
....++.+||-.|+|. |.++..+++ .|+.+|+++|.++ -.+.+++ .|.. .++..+-.+ +. ...+.
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHHhCCC
Confidence 4567888999999865 566666777 6777899999999 8877764 2331 222211111 11 11236
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+|+-.. + . ...+....+.|+++|.++.
T Consensus 260 ~d~vid~~-G----~----~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 260 VDYAFEMA-G----S----VPALETAYEITRRGGTTVT 288 (371)
T ss_pred CCEEEECC-C----C----hHHHHHHHHHHhcCCEEEE
Confidence 89998521 1 1 1234444578899999874
No 309
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.66 E-value=0.34 Score=44.81 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHc-C--------CCeEEEEechH-HHHHHHHHHHHc-----CCCCcEEEEEcccccccCCC
Q 015534 123 DKVVLDVGAGTGILSLFCAKA-G--------AAHVYAVECSQ-MANMAKQIVEAN-----GFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~-g--------~~~V~~vD~s~-~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~ 187 (405)
..+|+|+|+|+|.++.-+++. . ..+++.||+|+ +.+..++.+... ....+|.+ ..++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 469999999999999888872 1 24899999999 988888877652 23445776 33444332
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
..-+|+++-
T Consensus 95 -~~~~iiaNE 103 (252)
T PF02636_consen 95 -FPGFIIANE 103 (252)
T ss_dssp -CCEEEEEES
T ss_pred -CCEEEEEee
Confidence 455666643
No 310
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.58 E-value=0.21 Score=47.63 Aligned_cols=84 Identities=25% Similarity=0.169 Sum_probs=53.8
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
.++.+||-+|||. |.++..+++ .|+..|+++|.++ .++.|.+. . ++ |..+. ....+|+|+-..
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~--~~~g~Dvvid~~ 208 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD--PRRDYRAIYDAS 208 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc--cCCCCCEEEECC
Confidence 3577899999876 677777777 6887788899888 76666532 1 11 11110 124689988521
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+ . +..+....++|+++|+++.
T Consensus 209 -G----~----~~~~~~~~~~l~~~G~iv~ 229 (308)
T TIGR01202 209 -G----D----PSLIDTLVRRLAKGGEIVL 229 (308)
T ss_pred -C----C----HHHHHHHHHhhhcCcEEEE
Confidence 1 1 2234555678999999874
No 311
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.56 E-value=0.29 Score=52.01 Aligned_cols=105 Identities=14% Similarity=0.089 Sum_probs=64.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-c-------C-----CCeEEEEechH-HHHHHH--------------HHHHH-----c
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK-A-------G-----AAHVYAVECSQ-MANMAK--------------QIVEA-----N 167 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~-~-------g-----~~~V~~vD~s~-~~~~a~--------------~~~~~-----~ 167 (405)
.+.-+|||+|-|+|...+.+.+ . . .-+++++|..| ..+... +.... .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 3446999999999976555543 1 1 23899999754 322222 22211 1
Q ss_pred CC------CC--cEEEEEcccccccCC-CCceeEEEEccccccccChhh-HHHHHHHHHhcccCCcEEE
Q 015534 168 GF------SN--VITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENM-LNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 168 ~~------~~--~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~~~-~~~~l~~~~~~LkpgG~li 226 (405)
|+ .+ .+++..+|+.+.... ...+|+++.+.+.-.- ++.+ -..++..+.++++|||.+.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~-np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAK-NPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCcc-ChhhccHHHHHHHHHHhCCCCEEE
Confidence 21 01 345677887664311 2579999987653322 2233 2688999999999999987
No 312
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.55 E-value=0.52 Score=45.84 Aligned_cols=94 Identities=20% Similarity=0.170 Sum_probs=58.0
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc---cccc-cc--CCCC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG---KIEE-IE--LPVT 188 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~---d~~~-~~--~~~~ 188 (405)
....++.+||-.|+|. |.++..+|+ .|+.+|+++|.++ -.+.+++ .|.. .++.. +..+ +. ....
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT---HTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEEcCCCcCHHHHHHHHhCCC
Confidence 4567889999999865 666777777 6776799999999 8877754 2321 22221 1111 10 1224
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+|+|+-. .+ .. ..+....+.|++||+++.
T Consensus 245 g~d~vid~-~g----~~----~~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 245 GADVVIDA-VG----RP----ETYKQAFYARDLAGTVVL 274 (358)
T ss_pred CCCEEEEC-CC----CH----HHHHHHHHHhccCCEEEE
Confidence 68999842 11 11 233444578899999874
No 313
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.30 E-value=0.55 Score=46.00 Aligned_cols=105 Identities=14% Similarity=0.223 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHc------------C----CCeEEEEechH--HHHHHHHHHH--H-----------cCCCC
Q 015534 123 DKVVLDVGAGTGILSLFCAKA------------G----AAHVYAVECSQ--MANMAKQIVE--A-----------NGFSN 171 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~------------g----~~~V~~vD~s~--~~~~a~~~~~--~-----------~~~~~ 171 (405)
..+|+|+|||+|..++.+... + --+|+.-|... .-...+.... . .+-..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 568999999999877665331 1 13566555532 2222222111 0 01000
Q ss_pred -cEEEEEcccccccCCCCceeEEEEccccccccC-----------------------------------hhhHHHHHHHH
Q 015534 172 -VITVLKGKIEEIELPVTKVDIIISEWMGYFLLF-----------------------------------ENMLNTVLYAR 215 (405)
Q Consensus 172 -~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~-----------------------------------~~~~~~~l~~~ 215 (405)
-+..+.+..-.-.+|.++.+++++....+++.. ..++..+++.+
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 022233444444477889999998543333321 11345778888
Q ss_pred HhcccCCcEEEe
Q 015534 216 DKWLVDDGIVLP 227 (405)
Q Consensus 216 ~~~LkpgG~lip 227 (405)
++-|.|||+++.
T Consensus 224 a~ELvpGG~mvl 235 (386)
T PLN02668 224 AQEMKRGGAMFL 235 (386)
T ss_pred HHHhccCcEEEE
Confidence 899999999884
No 314
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.11 E-value=0.3 Score=45.82 Aligned_cols=95 Identities=18% Similarity=0.178 Sum_probs=68.0
Q ss_pred CCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 123 DKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 123 ~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
+.+|.-||.|. |..+..+|- .|+ .|+.+|.|. -+......+. .+++.+......+...-.++|++|...+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVL- 240 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVL- 240 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEE-
Confidence 35788888886 555555555 445 999999998 7766665543 4688888877777654578999997433
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+.....+.-+.+++.+.+|||++++
T Consensus 241 --IpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 241 --IPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred --ecCCCCceehhHHHHHhcCCCcEEE
Confidence 3344555556777789999999987
No 315
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=92.84 E-value=0.33 Score=45.60 Aligned_cols=72 Identities=24% Similarity=0.230 Sum_probs=52.6
Q ss_pred EEEEcCCCcHHHHHH--HHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-------CCCceeEEEE
Q 015534 126 VLDVGAGTGILSLFC--AKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-------PVTKVDIIIS 195 (405)
Q Consensus 126 VLDiGcG~G~l~~~l--a~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~~D~Iv~ 195 (405)
=+|||.|...+--.+ .+.+ -...++|+.+ .+..|++++.++++++.+.+++.......+ ++..||.+.|
T Consensus 106 GiDIgtgasci~~llg~rq~n-~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNN-WYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeeccCchhhhHHhhhchhcc-ceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 479998886442222 2233 4789999999 999999999999999999988875433221 2356999999
Q ss_pred ccc
Q 015534 196 EWM 198 (405)
Q Consensus 196 ~~~ 198 (405)
++.
T Consensus 185 NPP 187 (419)
T KOG2912|consen 185 NPP 187 (419)
T ss_pred CCc
Confidence 874
No 316
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.80 E-value=0.32 Score=45.57 Aligned_cols=92 Identities=27% Similarity=0.258 Sum_probs=55.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEE-ccc-cccc--CCCCceeE
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK-GKI-EEIE--LPVTKVDI 192 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~-~d~-~~~~--~~~~~~D~ 192 (405)
..++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ -.+.|++. |.. .++. .+. ..+. .....+|+
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT---ALAEPEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc---EecCchhhHHHHHHHhCCCCCCE
Confidence 35788999999875 566666777 6776799999988 77776653 321 1111 111 1110 12246899
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+-.. + . ...+....+.|+|+|+++.
T Consensus 191 vid~~-G-------~-~~~~~~~~~~l~~~G~iv~ 216 (280)
T TIGR03366 191 ALEFS-G-------A-TAAVRACLESLDVGGTAVL 216 (280)
T ss_pred EEECC-C-------C-hHHHHHHHHHhcCCCEEEE
Confidence 88521 1 1 2234445678899999874
No 317
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.64 E-value=0.5 Score=43.59 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=70.4
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---CCceeEE
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDII 193 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~I 193 (405)
....|+.|+-+| ---+.++.++-.| +++|..+|+++ .+....+.++..|+ ++++.+.-|+.+- +| .++||++
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~p-lpe~~~~kFDvf 225 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNP-LPEDLKRKFDVF 225 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhccc-ChHHHHhhCCee
Confidence 345678899999 4446677776644 78999999999 99999999999998 4588888888764 22 3789999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCC
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDD 222 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~Lkpg 222 (405)
+.++.-. ...+..++..-...||.-
T Consensus 226 iTDPpeT----i~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 226 ITDPPET----IKALKLFLGRGIATLKGE 250 (354)
T ss_pred ecCchhh----HHHHHHHHhccHHHhcCC
Confidence 9876422 134455555444555544
No 318
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.64 E-value=0.47 Score=45.93 Aligned_cols=111 Identities=20% Similarity=0.171 Sum_probs=73.3
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHH-------HcCC-CCcEEEEEcccccc
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVE-------ANGF-SNVITVLKGKIEEI 183 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~-------~~~~-~~~i~~~~~d~~~~ 183 (405)
+.+.....++....|+|.|.|.+..+++. ++.+.=+|+++.+ ..+.|..+.. -.|- ++.++.++++..+-
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~ 263 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDP 263 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCH
Confidence 33345678889999999999999888888 5677888998876 5554433322 2232 35688888887654
Q ss_pred cC---CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 184 EL---PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 184 ~~---~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.. -....++|+++-+ .+.++..-.+ ..+..-+++|-++|-.
T Consensus 264 ~~v~eI~~eatvi~vNN~---~Fdp~L~lr~-~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 264 KRVTEIQTEATVIFVNNV---AFDPELKLRS-KEILQKCKDGTRIISS 307 (419)
T ss_pred HHHHHHhhcceEEEEecc---cCCHHHHHhh-HHHHhhCCCcceEecc
Confidence 31 1367899998654 4343333233 3666777899988843
No 319
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.46 E-value=0.45 Score=43.60 Aligned_cols=96 Identities=28% Similarity=0.310 Sum_probs=56.9
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc-c-cCCCCceeE
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDI 192 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~D~ 192 (405)
....++.+||..|+|+ |.....+++ .| .+|++++.++ ..+.+++. +....+.....+... + ....+.+|+
T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 3346788999999996 666666777 55 5999999998 77776543 211101111111100 0 112367999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++...- .. ..+....+.|+++|.++.
T Consensus 205 vi~~~~-----~~----~~~~~~~~~l~~~G~~v~ 230 (271)
T cd05188 205 VIDAVG-----GP----ETLAQALRLLRPGGRIVV 230 (271)
T ss_pred EEECCC-----CH----HHHHHHHHhcccCCEEEE
Confidence 986321 10 234455678899999873
No 320
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.28 E-value=0.31 Score=46.90 Aligned_cols=97 Identities=26% Similarity=0.231 Sum_probs=56.5
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeE
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~ 192 (405)
....++.+||-+|+|. |.++..+++ .|+++|++++.++ -.+.+++. |....+.....+...+. .....+|+
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 3456789999998864 556666666 6776699999998 77777543 32111111111111111 12247999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+-.. + . ...+....+.|+++|.++.
T Consensus 235 vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 235 AIECS-G----N----TAARRLALEAVRPWGRLVL 260 (339)
T ss_pred EEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 98521 1 1 1233444578899999873
No 321
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.97 E-value=0.2 Score=48.00 Aligned_cols=65 Identities=26% Similarity=0.352 Sum_probs=50.5
Q ss_pred EEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEcc
Q 015534 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEW 197 (405)
Q Consensus 126 VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~ 197 (405)
|+|+-||.|.++.-+.++|...|.++|+++ .++.-+.++. + .++.+|+.++... ...+|+++..+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhhCCCcCEEEecC
Confidence 689999999999999999987888999999 8887776642 2 4456788777531 24689999753
No 322
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=91.94 E-value=1 Score=43.22 Aligned_cols=90 Identities=23% Similarity=0.312 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc---cccccCCCCceeEEEE
Q 015534 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK---IEEIELPVTKVDIIIS 195 (405)
Q Consensus 122 ~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~~~~~D~Iv~ 195 (405)
++.+||..|||. |..+..+++ .|..+|++++.++ ..+.+++. +.. .++..+ ...+....+.+|+++.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD---ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC---EEEcCCchhhhhhhccCCCccEEEE
Confidence 788999998875 666666776 6666899999988 77766542 321 222211 1122112245999986
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.. + . ...+....+.|+++|+++-
T Consensus 238 ~~-g----~----~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 238 AS-G----A----PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred CC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 32 1 1 1234555688899999873
No 323
>PLN02740 Alcohol dehydrogenase-like
Probab=91.79 E-value=1.1 Score=43.98 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=35.6
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHH
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~ 162 (405)
....++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ -++.|++
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 4567889999999875 566666777 6776899999999 8888765
No 324
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=91.78 E-value=0.67 Score=44.67 Aligned_cols=43 Identities=37% Similarity=0.411 Sum_probs=35.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHH
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQI 163 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~ 163 (405)
.+-..|.|+|+|.|.++.+++-.....|+|||-|. ..+.|++.
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 44468999999999999999884344999999999 77777653
No 325
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.73 E-value=1.5 Score=41.77 Aligned_cols=93 Identities=24% Similarity=0.224 Sum_probs=58.5
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-----cCCCCc
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-----ELPVTK 189 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~ 189 (405)
....++.+||..|+|. |..+..+|+ .|. +|++++.++ ..+.+++ .+.. .++...-... ......
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~ 232 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGAD---EVLNSLDDSPKDKKAAGLGGG 232 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCC---EEEcCCCcCHHHHHHHhcCCC
Confidence 4466788999988874 777777888 565 799999999 8877754 2331 1111111110 123367
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+++... + . ...+....+.|+++|.++.
T Consensus 233 ~D~vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 261 (338)
T cd08254 233 FDVIFDFV-G----T----QPTFEDAQKAVKPGGRIVV 261 (338)
T ss_pred ceEEEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 99988521 0 1 2345566689999999874
No 326
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.63 E-value=0.5 Score=45.89 Aligned_cols=92 Identities=24% Similarity=0.434 Sum_probs=54.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEec---hH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVEC---SQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~---s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (405)
..++.+||-+|+|. |.++..+++ .|+ +|++++. ++ -.+.+++ .|.. .+.....+..+... ...+|+|
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~~~~-~~~~d~v 242 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAEVKL-VGEFDLI 242 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhhhhh-cCCCCEE
Confidence 35788999999876 677777777 666 8999987 56 5555543 3321 11111111111111 2468988
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+-.. + . +..+....+.|++||.++.
T Consensus 243 id~~-g----~----~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 243 IEAT-G----V----PPLAFEALPALAPNGVVIL 267 (355)
T ss_pred EECc-C----C----HHHHHHHHHHccCCcEEEE
Confidence 8521 1 1 1245556688999998874
No 327
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.61 E-value=0.47 Score=45.89 Aligned_cols=95 Identities=24% Similarity=0.278 Sum_probs=55.7
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc---ccccc--CCCCc
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK---IEEIE--LPVTK 189 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d---~~~~~--~~~~~ 189 (405)
....++.+||-.|+|. |.++..+|+ .|+..|++++.++ -.+.+++ .|.. .++..+ ...+. .....
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAM---QTFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---eEecCcccCHHHHHHHhcCCC
Confidence 3456788999999866 566666777 6776689999988 7776654 2321 122111 11111 12246
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|.++.+..+ . ...+....++|++||.++.
T Consensus 229 ~d~~v~d~~G----~----~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 229 FDQLILETAG----V----PQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred CCeEEEECCC----C----HHHHHHHHHHhhcCCEEEE
Confidence 7733333222 1 2344555688899999874
No 328
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=91.31 E-value=0.43 Score=40.45 Aligned_cols=95 Identities=17% Similarity=0.115 Sum_probs=57.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHH-HHHHHHHHcCCCCcE-EEEEcccc-cccCCCCceeEEEEcc-
Q 015534 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MAN-MAKQIVEANGFSNVI-TVLKGKIE-EIELPVTKVDIIISEW- 197 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~-~a~~~~~~~~~~~~i-~~~~~d~~-~~~~~~~~~D~Iv~~~- 197 (405)
+++++-+|...=..-..+.+.|+++|..||.++ -+. ..+ +++ .+...|.. ++..-.++||.+.|-.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~---------dr~ssi~p~df~~~~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFR---------DRLSSILPVDFAKNWQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccc---------cccccccHHHHHHHHHHhhccchhhheech
Confidence 678999999988887788889999999999986 221 111 111 11111211 1111137899988721
Q ss_pred ccccc--------cChhhHHHHHHHHHhcccCCcEEEe
Q 015534 198 MGYFL--------LFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l--------~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.++. ...+++ ..+..+.++|||||.++.
T Consensus 73 iEh~GLGRYGDPidp~Gdl-~~m~~i~~vLK~GG~L~l 109 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDL-RAMAKIKCVLKPGGLLFL 109 (177)
T ss_pred hccccccccCCCCCccccH-HHHHHHHHhhccCCeEEE
Confidence 11111 111233 456677899999999875
No 329
>PRK11524 putative methyltransferase; Provisional
Probab=91.24 E-value=0.33 Score=45.84 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=39.9
Q ss_pred EEEEEcccccc--cCCCCceeEEEEcccccccc--------------ChhhHHHHHHHHHhcccCCcEEEec
Q 015534 173 ITVLKGKIEEI--ELPVTKVDIIISEWMGYFLL--------------FENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 173 i~~~~~d~~~~--~~~~~~~D~Iv~~~~~~~l~--------------~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+++++|..+. .+++++||+|++++. |... +...+..++.++.++|||||.++..
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPP-Y~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPP-YNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCC-cccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 57889999885 356689999999874 3220 0122357888999999999998753
No 330
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=91.20 E-value=0.82 Score=40.02 Aligned_cols=110 Identities=13% Similarity=0.224 Sum_probs=65.5
Q ss_pred HhHHHHHHHHHhccCCCCCC-EEEEEcCCCcHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCC--CCcEEEEEccc
Q 015534 105 VRTKSYQNVIYQNKFLFKDK-VVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKI 180 (405)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~-~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~~--~~~i~~~~~d~ 180 (405)
.|+..+.+.+.......++. .|+.||||-=.....+... |..+++-+|..++++.-++.+...+. +.+.+++..|+
T Consensus 60 ~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 139 (183)
T PF04072_consen 60 ARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADL 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-T
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccc
Confidence 34544545555444333444 8999999998888888774 35578888887777666666666532 12245789998
Q ss_pred cccc---------CCCCceeEEEEccccccccChhhHHHHHHHH
Q 015534 181 EEIE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYAR 215 (405)
Q Consensus 181 ~~~~---------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~ 215 (405)
.+.. +.....-+++++.+..++ .+.....++..+
T Consensus 140 ~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl-~~~~~~~ll~~i 182 (183)
T PF04072_consen 140 RDDSWIDALPKAGFDPDRPTLFIAEGVLMYL-SPEQVDALLRAI 182 (183)
T ss_dssp TSHHHHHHHHHCTT-TTSEEEEEEESSGGGS--HHHHHHHHHHH
T ss_pred cchhhHHHHHHhCCCCCCCeEEEEcchhhcC-CHHHHHHHHHHh
Confidence 7532 224667788888876666 344555666544
No 331
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.19 E-value=0.04 Score=46.15 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=39.0
Q ss_pred EEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 173 ITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 173 i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.+++.......+.++++|+|+++-+..++... ....+++.++++|||||++-.+.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~-Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYD-EGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCcCcEEEEEc
Confidence 444444444555778999999997655545333 33477899999999999986543
No 332
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=91.18 E-value=3.5 Score=36.81 Aligned_cols=111 Identities=18% Similarity=0.273 Sum_probs=66.5
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCc----HHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTG----ILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G----~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~ 180 (405)
...|..+|. ....-+.++++.|+.| .+++.+|. .-..++++|-..+ -+...++.+...++.+.++|+.++.
T Consensus 29 ~aEfISAlA---AG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 29 VAEFISALA---AGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred HHHHHHHHh---ccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 335555554 3345567889866644 23333333 2244888998888 7777788888888877789999885
Q ss_pred -ccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 181 -EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 181 -~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+++...-..+|.++.+. - .+.....+++.+ + +.|.|-++.
T Consensus 106 ~e~~~~~~~~iDF~vVDc---~--~~d~~~~vl~~~-~-~~~~GaVVV 146 (218)
T PF07279_consen 106 PEEVMPGLKGIDFVVVDC---K--REDFAARVLRAA-K-LSPRGAVVV 146 (218)
T ss_pred HHHHHhhccCCCEEEEeC---C--chhHHHHHHHHh-c-cCCCceEEE
Confidence 44432336789988642 1 122222555543 3 455565553
No 333
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=90.98 E-value=0.63 Score=41.47 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=55.6
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (405)
+-|.+........-|.+||.|.|.++..+..+|+.+...||+++ .+.-.+...++.. .+..+.++|+..+
T Consensus 40 ~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 40 DKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRF 110 (326)
T ss_pred HHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEecccccee
Confidence 34454555667788999999999999999999999999999999 8887776655444 4688888888654
No 334
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.93 E-value=2.2 Score=34.02 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=55.6
Q ss_pred CEEEEEcCCCc-HHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEcccccc
Q 015534 124 KVVLDVGAGTG-ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMGYF 201 (405)
Q Consensus 124 ~~VLDiGcG~G-~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~ 201 (405)
.+|.|+|-|.= ..+..++++|. .|+++|+++. +. + ..+.++..|+++-... -...|+|.|
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~------~a---~--~g~~~v~DDitnP~~~iY~~A~lIYS------ 76 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK------TA---P--EGLRFVVDDITNPNISIYEGADLIYS------ 76 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc------cC---c--ccceEEEccCCCccHHHhhCccceee------
Confidence 48999999875 45777788886 9999999871 11 1 2378999999875432 367899988
Q ss_pred ccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 202 LLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+-..+.+...+-.+.+.++-.-.+.|
T Consensus 77 iRpppEl~~~ildva~aVga~l~I~p 102 (129)
T COG1255 77 IRPPPELQSAILDVAKAVGAPLYIKP 102 (129)
T ss_pred cCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 22234444444445555554444443
No 335
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=90.87 E-value=1.9 Score=41.50 Aligned_cols=89 Identities=17% Similarity=0.032 Sum_probs=55.0
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
....++.+||-.|+|. |.++..+|+ .|+ +|++++.++ -.+.|++ .|.. .++. ..+. ..+.+|+++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~---~vi~--~~~~--~~~~~d~~i 228 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAA---SAGG--AYDT--PPEPLDAAI 228 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCc---eecc--cccc--CcccceEEE
Confidence 4567889999999864 555666667 566 799999998 7777665 3432 1121 1111 124578765
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
-.. . . ...+....+.|++||+++.
T Consensus 229 ~~~----~----~-~~~~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 229 LFA----P----A-GGLVPPALEALDRGGVLAV 252 (329)
T ss_pred ECC----C----c-HHHHHHHHHhhCCCcEEEE
Confidence 311 0 1 1245556688999999874
No 336
>PLN02827 Alcohol dehydrogenase-like
Probab=90.82 E-value=1.2 Score=43.80 Aligned_cols=97 Identities=23% Similarity=0.239 Sum_probs=56.6
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEE--ccccc-cc-CCCCce
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK--GKIEE-IE-LPVTKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~--~d~~~-~~-~~~~~~ 190 (405)
....++.+||-.|+|. |.++..+++ .|+..|+++|.++ -.+.|++ .|...-+.... .+... +. +..+.+
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHhCCCC
Confidence 4467889999999865 566666676 6777899999888 7777754 34321111111 01111 10 112368
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCC-cEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (405)
|+|+-.. + . +..+....+.|++| |+++.
T Consensus 265 d~vid~~-G-------~-~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 265 DYSFECV-G-------D-TGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred CEEEECC-C-------C-hHHHHHHHHhhccCCCEEEE
Confidence 9988521 1 1 12234445778898 99863
No 337
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.68 E-value=1.8 Score=42.81 Aligned_cols=85 Identities=29% Similarity=0.293 Sum_probs=52.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
...|++|+-+|+|. |......++ .|+ +|+++|.++ ....|.. .|. .+. ++.+. . ...|+|++.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~----~G~----~v~--~leea-l--~~aDVVIta 257 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAM----DGF----RVM--TMEEA-A--KIGDIFITA 257 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHh----cCC----EeC--CHHHH-H--hcCCEEEEC
Confidence 36889999999998 555555555 566 899999998 5443332 232 222 23332 2 467998863
Q ss_pred cccccccChhhHHHHH-HHHHhcccCCcEEEe
Q 015534 197 WMGYFLLFENMLNTVL-YARDKWLVDDGIVLP 227 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l-~~~~~~LkpgG~lip 227 (405)
. +. ..++ ......+|+|++++.
T Consensus 258 T--------G~-~~vI~~~~~~~mK~GailiN 280 (406)
T TIGR00936 258 T--------GN-KDVIRGEHFENMKDGAIVAN 280 (406)
T ss_pred C--------CC-HHHHHHHHHhcCCCCcEEEE
Confidence 2 11 2223 335678899998874
No 338
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=90.50 E-value=5 Score=34.40 Aligned_cols=106 Identities=15% Similarity=0.088 Sum_probs=66.8
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccccc-CC-
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE-LP- 186 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~- 186 (405)
.+.+.+.+. ..++.+|+-|||=+-...+.-......+++..|++. ++...+ +. .|+.-|...-. ++
T Consensus 14 ~l~~~l~~~--~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~-------RF~~~~--~~-~F~fyD~~~p~~~~~ 81 (162)
T PF10237_consen 14 FLARELLDG--ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDR-------RFEQFG--GD-EFVFYDYNEPEELPE 81 (162)
T ss_pred HHHHHHHHh--cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecc-------hHHhcC--Cc-ceEECCCCChhhhhh
Confidence 444555532 235679999999885444443223456899999987 222222 22 34544443321 11
Q ss_pred --CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 187 --VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 187 --~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.++||+||+++.. +.++.+..+...+..++++++.+|..+
T Consensus 82 ~l~~~~d~vv~DPPF---l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 82 ELKGKFDVVVIDPPF---LSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred hcCCCceEEEECCCC---CCHHHHHHHHHHHHHHhCccceEEEec
Confidence 3799999999852 466677777788878889999888544
No 339
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=90.42 E-value=0.16 Score=40.21 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=27.7
Q ss_pred ceeEEEEccccc--cc-cChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGY--FL-LFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~--~l-~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+||+|+|-.+.- +| .+...+..++..+.+.|+|||.+|.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 589999943221 11 2345677899999999999999984
No 340
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.28 E-value=0.48 Score=45.73 Aligned_cols=68 Identities=29% Similarity=0.299 Sum_probs=53.4
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC--C-ceeEEEEcc
Q 015534 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV--T-KVDIIISEW 197 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--~-~~D~Iv~~~ 197 (405)
.+++|+-||.|.+.+-+.++|..-+.++|+++ .++.-+.+... ..++..|+..+.... . .+|+|+..+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence 57999999999999999999998999999999 88776666542 456777777665321 2 799999854
No 341
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.10 E-value=2 Score=42.86 Aligned_cols=84 Identities=26% Similarity=0.281 Sum_probs=51.3
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
..|++|+-+|+|. |......++ .|+ +|+.+|.++ ....|.. .|. ++. ++.+. + ..+|+|+...
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~----~G~----~v~--~l~ea-l--~~aDVVI~aT 275 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAM----DGF----RVM--TMEEA-A--ELGDIFVTAT 275 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHh----cCC----Eec--CHHHH-H--hCCCEEEECC
Confidence 5889999999987 444333344 666 899999998 5443322 232 222 33333 1 4689998632
Q ss_pred ccccccChhhHHHHH-HHHHhcccCCcEEEe
Q 015534 198 MGYFLLFENMLNTVL-YARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l-~~~~~~LkpgG~lip 227 (405)
+.. .++ ......+|+|++++-
T Consensus 276 --------G~~-~vI~~~~~~~mK~GailiN 297 (425)
T PRK05476 276 --------GNK-DVITAEHMEAMKDGAILAN 297 (425)
T ss_pred --------CCH-HHHHHHHHhcCCCCCEEEE
Confidence 111 233 345678899998874
No 342
>PLN02494 adenosylhomocysteinase
Probab=89.96 E-value=1.4 Score=44.27 Aligned_cols=95 Identities=22% Similarity=0.314 Sum_probs=55.9
Q ss_pred HHHHHhccC-CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015534 111 QNVIYQNKF-LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (405)
Q Consensus 111 ~~~i~~~~~-~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (405)
.+.|.+... ...|++|+-+|+|. |......++ .|+ +|+++|.++ -...|.. .|. .+. ++.+. +
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~----~G~----~vv--~leEa-l- 307 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALM----EGY----QVL--TLEDV-V- 307 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHh----cCC----eec--cHHHH-H-
Confidence 444444332 36789999999997 544444444 666 899999998 5444322 232 222 33332 1
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
...|+|+... +....+.......+|+||+++-
T Consensus 308 -~~ADVVI~tT--------Gt~~vI~~e~L~~MK~GAiLiN 339 (477)
T PLN02494 308 -SEADIFVTTT--------GNKDIIMVDHMRKMKNNAIVCN 339 (477)
T ss_pred -hhCCEEEECC--------CCccchHHHHHhcCCCCCEEEE
Confidence 4689998722 1111223445578999999884
No 343
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=89.93 E-value=1.7 Score=38.18 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=52.7
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHH------------HHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQ------------IVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 125 ~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~------------~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
+|--+|.|. | .++..+|+.|. +|+|+|+++ .++..++ .+.+..-..+..+. .|.... ...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a---i~~ 76 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA---IKD 76 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH---HHH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh---hhc
Confidence 567788887 4 45666777876 999999999 7766543 11111101223332 233221 146
Q ss_pred eeEEEEcc-cccccc---ChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 190 VDIIISEW-MGYFLL---FENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 190 ~D~Iv~~~-~~~~l~---~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.|+++... ....-. ....+..+++.+.+.|+++..++..+
T Consensus 77 adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S 120 (185)
T PF03721_consen 77 ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES 120 (185)
T ss_dssp -SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc
Confidence 78877532 111111 12346778888889999977776543
No 344
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=89.81 E-value=8.5 Score=35.22 Aligned_cols=104 Identities=15% Similarity=0.137 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH----cC-CCeEEEEechH-HHH-HHHHHHHHcCCCCcEEEEEccccccc--CCCCcee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK----AG-AAHVYAVECSQ-MAN-MAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~----~g-~~~V~~vD~s~-~~~-~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D 191 (405)
..+...+|+|+|+..-+..+.. .| ..+.+.+|+|. .++ .|++...... .-.+.-+.+|.+.-. ++...--
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~-~l~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP-GLEVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC-CCeEeehhhhHHHHHhcccCCCeE
Confidence 3467899999999866555554 33 35899999999 665 4555555443 223666777765422 2322223
Q ss_pred EEEE--ccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIIS--EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~--~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+++- +.+++ +.++.-..++..+...|+||-.++.
T Consensus 156 l~~flGStlGN--~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 156 LFVFLGSTLGN--LTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred EEEEecccccC--CChHHHHHHHHHHHhcCCCcceEEE
Confidence 3332 22222 2345566889999999999998774
No 345
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=89.71 E-value=0.76 Score=37.30 Aligned_cols=81 Identities=25% Similarity=0.255 Sum_probs=52.4
Q ss_pred CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCceeEEEEcccccccc
Q 015534 132 GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKVDIIISEWMGYFLL 203 (405)
Q Consensus 132 G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~D~Iv~~~~~~~l~ 203 (405)
|.|.++..+|+ .| .+|+++|.++ -.+.+++. |. -.++..+-.++. .+...+|+|+-.. .
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~----Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-----g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL----GA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCV-----G 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT----TE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESS-----S
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh----cc---cccccccccccccccccccccccceEEEEec-----C
Confidence 45888888888 67 7999999999 88887653 32 123333222111 2235899998521 1
Q ss_pred ChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 204 FENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
. ...+.....+|+|+|.++...
T Consensus 68 ~----~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 68 S----GDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp S----HHHHHHHHHHEEEEEEEEEES
T ss_pred c----HHHHHHHHHHhccCCEEEEEE
Confidence 1 245566668999999987543
No 346
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=89.66 E-value=1.4 Score=40.80 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=49.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc------CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA------GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 182 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~------g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (405)
+...+.+...+.++..++|+|||.|.++.++++. +...++.||-.. -. .+...+........++=+..|+.+
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeec
Confidence 3444454445567789999999999999999994 245889999865 22 233333333311246777788888
Q ss_pred ccC
Q 015534 183 IEL 185 (405)
Q Consensus 183 ~~~ 185 (405)
+.+
T Consensus 85 l~l 87 (259)
T PF05206_consen 85 LDL 87 (259)
T ss_pred cch
Confidence 764
No 347
>PRK10458 DNA cytosine methylase; Provisional
Probab=89.55 E-value=1.7 Score=43.91 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=44.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015534 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (405)
..+++|+-||.|.+++-+-++|...|.++|+++ +.+.-+.++... ....++.+|+.++.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCc
Confidence 459999999999999999889988899999999 777766654211 11344556666654
No 348
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=89.39 E-value=0.94 Score=43.22 Aligned_cols=48 Identities=27% Similarity=0.356 Sum_probs=40.7
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHH
Q 015534 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQI 163 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~ 163 (405)
......+|.+|.-+|||. |..++.-|+ +|+.+++|+|+++ -++.|++.
T Consensus 179 nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 179 NTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred hcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 345678899999999997 777777777 7999999999999 99998874
No 349
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.33 E-value=4.1 Score=38.20 Aligned_cols=96 Identities=19% Similarity=0.271 Sum_probs=59.4
Q ss_pred EEEEEcCCC--cHHHHHHHHcCCCeEEEEechH-HHHHHHHHH-------HHcCC-C--------CcEEEEEcccccccC
Q 015534 125 VVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIV-------EANGF-S--------NVITVLKGKIEEIEL 185 (405)
Q Consensus 125 ~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~-------~~~~~-~--------~~i~~~~~d~~~~~~ 185 (405)
+|--||+|. +.++..+++.|. .|+++|.++ .++.+++.+ .+.+. . .++++ ..|...+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~-- 80 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDDL-- 80 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHHh--
Confidence 688899996 466777777776 999999999 887655322 22331 1 12332 2333221
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
..+|+|+-... ........++..+.+.++|+..++....
T Consensus 81 --~~aDlVi~av~----e~~~~k~~~~~~l~~~~~~~~il~s~ts 119 (282)
T PRK05808 81 --KDADLVIEAAT----ENMDLKKKIFAQLDEIAKPEAILATNTS 119 (282)
T ss_pred --ccCCeeeeccc----ccHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 56899985321 1112335788888888999887765443
No 350
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=89.30 E-value=1.4 Score=42.66 Aligned_cols=96 Identities=21% Similarity=0.166 Sum_probs=57.7
Q ss_pred cCCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc-cccc-cc-CCCCce
Q 015534 118 KFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEE-IE-LPVTKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGc-G-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~~-~~~~~~ 190 (405)
....+|.+||-.|+ | .|.++..+|+ .|+ +|++++.++ -.+.+++. .|....+..... +..+ +. ...+.+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHCCCCc
Confidence 45678899999998 3 5778888888 566 799999888 76666532 233211111111 2211 10 112469
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|+-. ++ . ..+....+.|++||.++.
T Consensus 230 D~v~d~-vG-------~--~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 230 DIYFDN-VG-------G--DMLDAALLNMKIHGRIAV 256 (348)
T ss_pred EEEEEC-CC-------H--HHHHHHHHHhccCCEEEE
Confidence 999852 11 1 234555678999999873
No 351
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.23 E-value=0.87 Score=42.92 Aligned_cols=46 Identities=26% Similarity=0.299 Sum_probs=38.1
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHH
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQI 163 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~ 163 (405)
....+|.+|.-+|+|. |+...+-++ +|+.+++|||+++ -.+.|++.
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 4568899999999997 666666666 7999999999999 88888764
No 352
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.20 E-value=2.6 Score=40.51 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=60.9
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHH-------HcCCC-----CcEEEEEcccccccCCCC
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVE-------ANGFS-----NVITVLKGKIEEIELPVT 188 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~-------~~~~~-----~~i~~~~~d~~~~~~~~~ 188 (405)
++|--||+|+ | .++..++..|. .|+..|.++ .++.++..+. +.++. .++++.. ++.+. -.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a---v~ 82 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC---VA 82 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH---hc
Confidence 5799999996 2 56666777877 999999998 8776655433 12211 2233322 22221 15
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
..|+|+-.. ......-..++..+.+.++|+.+|--++
T Consensus 83 ~aDlViEav----pE~l~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 83 DADFIQESA----PEREALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred CCCEEEECC----cCCHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 689998643 2233445678888989999988554333
No 353
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.03 E-value=2.8 Score=33.21 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=48.9
Q ss_pred CCCcHHHHHHHH---cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEEccccccc
Q 015534 131 AGTGILSLFCAK---AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISEWMGYFL 202 (405)
Q Consensus 131 cG~G~l~~~la~---~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~~~~~~~l 202 (405)
||.|.++..+++ .+...|+.+|.++ .++.+++. + +.++.+|..+.. ..-.++|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~----- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAGIEKADAVVILT----- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTTGGCESEEEEES-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcCccccCEEEEcc-----
Confidence 444556555555 2345899999999 87766542 2 678999998754 2346899888732
Q ss_pred cChhhHHHHHHHHHhcccCCcEEE
Q 015534 203 LFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
........+....+-+.|...++
T Consensus 71 -~~d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 71 -DDDEENLLIALLARELNPDIRII 93 (116)
T ss_dssp -SSHHHHHHHHHHHHHHTTTSEEE
T ss_pred -CCHHHHHHHHHHHHHHCCCCeEE
Confidence 11222223333445666776665
No 354
>PRK13699 putative methylase; Provisional
Probab=89.00 E-value=0.58 Score=42.60 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=39.3
Q ss_pred EEEEEcccccc--cCCCCceeEEEEcccccccc-----C--------hhhHHHHHHHHHhcccCCcEEEe
Q 015534 173 ITVLKGKIEEI--ELPVTKVDIIISEWMGYFLL-----F--------ENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 173 i~~~~~d~~~~--~~~~~~~D~Iv~~~~~~~l~-----~--------~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++++++|..++ .++++++|+|++++. |.+. + ..-....+.++.|+|||||.++.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPP-Y~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPP-YLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCC-cccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 46788888776 477899999999874 3321 0 12245778899999999998763
No 355
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=88.93 E-value=0.74 Score=44.53 Aligned_cols=94 Identities=21% Similarity=0.204 Sum_probs=58.0
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc----c-c-CCCC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----I-E-LPVT 188 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~-~-~~~~ 188 (405)
....++.+||-.|+|. |..+..+|+ .|...|+++|.++ ..+.+++ .|.. .++..+-.+ + . ....
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT---DIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---eEecCCCCCHHHHHHHHhCCC
Confidence 4466788999998764 566666777 6777899999998 7777664 3431 222211111 1 0 1224
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+|+|+... .+ ...+....+.|+++|+++-
T Consensus 235 ~~d~vld~~-----g~----~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 235 GVDAVIIAG-----GG----QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred CCcEEEECC-----CC----HHHHHHHHHHhhcCCEEEE
Confidence 699998521 11 1344556688899998873
No 356
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=88.66 E-value=0.53 Score=46.89 Aligned_cols=106 Identities=17% Similarity=0.043 Sum_probs=69.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-------CCCCcee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-------LPVTKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~D 191 (405)
..+..+|-+|-|.|.+..++.. .+..++++|++.| |++.|++++....- ++..+.-.|..+.. ..+..||
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCc
Confidence 3456799999999999888776 6667999999999 99999998744321 12333333332221 1346899
Q ss_pred EEEEcc--cc-ccccC---hhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEW--MG-YFLLF---ENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~--~~-~~l~~---~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++.... -. +.+.- .-....++..+...|.|.|.++.
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~i 414 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFII 414 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEE
Confidence 998742 11 11110 11235677888899999999864
No 357
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=88.48 E-value=1.7 Score=41.84 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=38.5
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc---------CCCeEEEEechH-HHHHHHHHHHHc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA---------GAAHVYAVECSQ-MANMAKQIVEAN 167 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~---------g~~~V~~vD~s~-~~~~a~~~~~~~ 167 (405)
.......++|||+|+|.++.-+++. ...++..||+|+ ..+.-+++++..
T Consensus 74 g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 74 GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 3344568999999999998777663 156999999999 888888877754
No 358
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.40 E-value=2.1 Score=40.15 Aligned_cols=73 Identities=23% Similarity=0.336 Sum_probs=57.0
Q ss_pred CCCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------C
Q 015534 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------L 185 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~ 185 (405)
...|..||-=|.|.| .++..+|++|+ +++..|++. -...-.+.+++.| ++.....|+.+.. -
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 456789999999998 67888889988 999999999 6666666666665 5888888887653 1
Q ss_pred CCCceeEEEEc
Q 015534 186 PVTKVDIIISE 196 (405)
Q Consensus 186 ~~~~~D~Iv~~ 196 (405)
.-+..|++|.+
T Consensus 111 e~G~V~ILVNN 121 (300)
T KOG1201|consen 111 EVGDVDILVNN 121 (300)
T ss_pred hcCCceEEEec
Confidence 24789999986
No 359
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.39 E-value=3.5 Score=38.94 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=57.4
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc----------CC---------CCcEEEEEcccc
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN----------GF---------SNVITVLKGKIE 181 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~----------~~---------~~~i~~~~~d~~ 181 (405)
.+|.-||+|. | .++..+++.|. .|+.+|.++ .++.+++.+... +. ..++.+. .+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4788999996 3 56666777776 899999999 888766544321 11 0112221 1221
Q ss_pred cccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 182 EIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 182 ~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
. -...|+|+.... ........++..+.+.++|+.+++
T Consensus 82 ~----~~~aDlVieav~----e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S----LSDADFIVEAVP----EKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H----hCCCCEEEEcCc----CcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 145799886432 122235677778888888887665
No 360
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.07 E-value=2.7 Score=39.49 Aligned_cols=83 Identities=22% Similarity=0.219 Sum_probs=51.1
Q ss_pred EEEEEcCCC--cHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccc
Q 015534 125 VVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (405)
Q Consensus 125 ~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (405)
+|.-||+|. |.++..+++.|. +|+++|.++ .++.+.+. +. +.....+.. . ....|+|+....
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~~-~---~~~aDlVilavp--- 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIER----GL---VDEASTDLS-L---LKDCDLVILALP--- 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----CC---cccccCCHh-H---hcCCCEEEEcCC---
Confidence 577889886 456667777766 899999998 77766542 32 221112221 1 156899986432
Q ss_pred ccChhhHHHHHHHHHhcccCCcEE
Q 015534 202 LLFENMLNTVLYARDKWLVDDGIV 225 (405)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~l 225 (405)
......++..+...++++.++
T Consensus 67 ---~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 ---IGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred ---HHHHHHHHHHHHHhCCCCcEE
Confidence 234456667777777776544
No 361
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.04 E-value=3.5 Score=38.87 Aligned_cols=96 Identities=21% Similarity=0.147 Sum_probs=58.3
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc--------CCC---------CcEEEEEcccccc
Q 015534 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN--------GFS---------NVITVLKGKIEEI 183 (405)
Q Consensus 124 ~~VLDiGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~--------~~~---------~~i~~~~~d~~~~ 183 (405)
.+|.-||+|.- .++..+++.|. +|+.+|.++ .++.+++.+... .+. .++++. .|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence 46889999963 45566666766 899999999 888877653211 110 123322 333322
Q ss_pred cCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
-...|+|+.... ........++..+...++++.++.-.
T Consensus 82 ---~~~aDlVieavp----e~~~~k~~~~~~l~~~~~~~~ii~sn 119 (287)
T PRK08293 82 ---VKDADLVIEAVP----EDPEIKGDFYEELAKVAPEKTIFATN 119 (287)
T ss_pred ---hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCCEEEEC
Confidence 156899986432 11234567777787888777766433
No 362
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=87.78 E-value=3.1 Score=39.98 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=55.6
Q ss_pred CCCC--CEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCC
Q 015534 120 LFKD--KVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVT 188 (405)
Q Consensus 120 ~~~~--~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~ 188 (405)
..++ .+||-.|+ |.|..+..+|+ .|+.+|++++.++ ..+.+++. .|.. .++..+-.++. ...+
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~---~vi~~~~~~~~~~i~~~~~~ 223 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD---AAINYKTDNVAERLRELCPE 223 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc---EEEECCCCCHHHHHHHHCCC
Confidence 4444 89999986 45777777888 6766899999988 77666553 2332 12222111110 1125
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+|+|+... + . . .+....+.|+++|.++.
T Consensus 224 gvd~vid~~-g----~-~----~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 224 GVDVYFDNV-G----G-E----ISDTVISQMNENSHIIL 252 (345)
T ss_pred CceEEEECC-C----c-H----HHHHHHHHhccCCEEEE
Confidence 699998521 1 1 1 12445678999999874
No 363
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=87.77 E-value=2.4 Score=41.36 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=51.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HH-HHHHHHHHHcCCCCcEEEEE-cccccccCCCCceeEEE
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MA-NMAKQIVEANGFSNVITVLK-GKIEEIELPVTKVDIII 194 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~-~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~Iv 194 (405)
..++.+||-.|+|. |.++..+|+ .|+ +|++++.++ -. +.+++ .|.. .++. .+...+....+.+|+|+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~----~Ga~---~vi~~~~~~~~~~~~~~~D~vi 252 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINR----LGAD---SFLVSTDPEKMKAAIGTMDYII 252 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHh----CCCc---EEEcCCCHHHHHhhcCCCCEEE
Confidence 45788999999875 667777777 566 788888776 33 33332 3431 1221 11111111113589888
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
-. ++ . ...+....+.|++||.++.
T Consensus 253 d~-~g-------~-~~~~~~~~~~l~~~G~iv~ 276 (360)
T PLN02586 253 DT-VS-------A-VHALGPLLGLLKVNGKLIT 276 (360)
T ss_pred EC-CC-------C-HHHHHHHHHHhcCCcEEEE
Confidence 42 11 1 1234455688999999873
No 364
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.73 E-value=6.1 Score=37.26 Aligned_cols=97 Identities=20% Similarity=0.310 Sum_probs=61.7
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH-------cCCC---------CcEEEEEccccccc
Q 015534 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NGFS---------NVITVLKGKIEEIE 184 (405)
Q Consensus 124 ~~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~~~---------~~i~~~~~d~~~~~ 184 (405)
.+|--||+|+ +.++..++..|. .|+.+|.++ .++.+.+++.+ .|.- .++++ ..|...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGDF- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHHh-
Confidence 3788999996 366677777877 999999999 98887665432 1210 12322 2333222
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcc-cCCcEEEecCc
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL-VDDGIVLPDKA 230 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~lip~~~ 230 (405)
...|+|+-.. ......-..++..+.+.+ +|+.++.-++.
T Consensus 83 ---~~~d~ViEav----~E~~~~K~~l~~~l~~~~~~~~~il~snTS 122 (286)
T PRK07819 83 ---ADRQLVIEAV----VEDEAVKTEIFAELDKVVTDPDAVLASNTS 122 (286)
T ss_pred ---CCCCEEEEec----ccCHHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 5689998532 223344557777888888 77877765443
No 365
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.71 E-value=2.8 Score=39.47 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=57.1
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH-------cC-CC--------CcEEEEEccccccc
Q 015534 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NG-FS--------NVITVLKGKIEEIE 184 (405)
Q Consensus 124 ~~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~-~~--------~~i~~~~~d~~~~~ 184 (405)
++|.-||+|. +.++..+++.|. +|+.+|.++ .++.+.+.... .+ +. .++++. .+..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA- 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh-
Confidence 3688899986 255666677776 899999999 88877654321 11 00 112222 222221
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
-...|+|+.... ........++..+.+.++|+.++..+.
T Consensus 79 --~~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~~~il~~~t 117 (288)
T PRK09260 79 --VADADLVIEAVP----EKLELKKAVFETADAHAPAECYIATNT 117 (288)
T ss_pred --hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 156899986332 112233466677778888887665443
No 366
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=87.66 E-value=0.97 Score=44.75 Aligned_cols=102 Identities=25% Similarity=0.167 Sum_probs=59.4
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc---cccc-cc--CCCC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG---KIEE-IE--LPVT 188 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~---d~~~-~~--~~~~ 188 (405)
....++.+||-.|+|. |.++..+|+ .|++.|+++|.++ -++.|++. |. + .+... +..+ +. ....
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga-~--~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GC-E--TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CC-e--EEecCCcccHHHHHHHHcCCC
Confidence 3456788888888875 666666777 6887788889888 77777653 33 1 12211 1111 11 1224
Q ss_pred ceeEEEEccccccc------cChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGYFL------LFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l------~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+|+++-.. +.-- .........+....+++++||.++.
T Consensus 254 g~Dvvid~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 254 EVDCAVDCV-GFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred CCcEEEECC-CCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 689998521 1100 0001112356666689999999874
No 367
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=87.63 E-value=2.6 Score=36.30 Aligned_cols=100 Identities=21% Similarity=0.170 Sum_probs=59.1
Q ss_pred EEcCCCcHHHHHHHH-cC-CCeEEEEec--hH-HHHH---HHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015534 128 DVGAGTGILSLFCAK-AG-AAHVYAVEC--SQ-MANM---AKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (405)
Q Consensus 128 DiGcG~G~l~~~la~-~g-~~~V~~vD~--s~-~~~~---a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~ 195 (405)
=||=|.=.++..+++ .+ ...++|.-. .+ ..+. +..++....-.+......-|++.+. ....+||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 467777777888888 45 556666544 33 3322 2233333211121233445666654 23578999998
Q ss_pred ccccccc----------cChhhHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFL----------LFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l----------~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+...... .+...+..++..+.++|+++|.|..
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhV 123 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHV 123 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 7642220 1223567888899999999998874
No 368
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=87.60 E-value=3.6 Score=39.18 Aligned_cols=96 Identities=17% Similarity=0.073 Sum_probs=57.3
Q ss_pred ccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc-ccccc--cCCCCc
Q 015534 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEI--ELPVTK 189 (405)
Q Consensus 117 ~~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~--~~~~~~ 189 (405)
.....++.+||-.|+ |.|.++..+++ .|+ +|++++.++ -.+.+++ .|...-+..... +..+. ....+.
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCCC
Confidence 345678899999995 35777788888 566 899999888 7777654 343211111110 11111 012246
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+|+-. ++ .. .+....++|+++|+++.
T Consensus 208 vdvv~d~-~G-----~~----~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 208 YDCYFDN-VG-----GE----FSNTVIGQMKKFGRIAI 235 (325)
T ss_pred eEEEEEC-CC-----HH----HHHHHHHHhCcCcEEEE
Confidence 9999852 11 11 23455688999999873
No 369
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.25 E-value=6.5 Score=37.09 Aligned_cols=98 Identities=22% Similarity=0.252 Sum_probs=60.5
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc-------CC-C--------CcEEEEEccccccc
Q 015534 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------GF-S--------NVITVLKGKIEEIE 184 (405)
Q Consensus 124 ~~VLDiGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~~-~--------~~i~~~~~d~~~~~ 184 (405)
.+|.-||+|.- .++..+++.|. .|+.+|.++ .++.+.+.+..+ +. + .++++. .+...+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLEDL- 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHHh-
Confidence 47889999973 45666677776 999999999 887765443321 21 1 123332 333322
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCce
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
...|+|+.... ........++..+...++|+.+++-...+
T Consensus 82 ---~~aD~Vieavp----e~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 82 ---ADCDLVIEAAT----EDETVKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred ---cCCCEEEEcCc----CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 56899986321 12234456777888889998877744443
No 370
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=87.16 E-value=5.5 Score=38.60 Aligned_cols=95 Identities=21% Similarity=0.231 Sum_probs=53.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccc----ccc--CCCCce
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE----EIE--LPVTKV 190 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~----~~~--~~~~~~ 190 (405)
..++.+||-.|+|. |..+..+|+ .|+++|++++.++ -.+.+++ .|....+.....+.. .+. .+...+
T Consensus 175 ~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 175 VGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 34788999998754 455556666 5666899999888 6666543 343211111111110 110 122569
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|+... + . ...+....+.|+++|+++.
T Consensus 251 d~vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 278 (361)
T cd08231 251 DVVIEAS-G----H----PAAVPEGLELLRRGGTYVL 278 (361)
T ss_pred cEEEECC-C----C----hHHHHHHHHHhccCCEEEE
Confidence 9998521 1 1 1234445588899999873
No 371
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=87.10 E-value=1.1 Score=44.10 Aligned_cols=96 Identities=18% Similarity=0.149 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 122 ~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
++.+|+-+|+|. |..+...++ .|+ +|+.+|.++ -++.+.... + ..+.....+...+.-.-..+|+|+....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEccc
Confidence 556899999984 555555555 677 799999988 655544322 1 1122111221222111146899997421
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
......+.-+-....+.++||++++
T Consensus 240 ---~~g~~~p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 240 ---IPGAKAPKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred ---cCCCCCCcCcCHHHHhcCCCCCEEE
Confidence 0000111111233346679998876
No 372
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=87.09 E-value=4.2 Score=40.40 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=35.5
Q ss_pred cCCCCCCEEEEEc-CC-CcHHHHHHHHc---CCCeEEEEechH-HHHHHHHH
Q 015534 118 KFLFKDKVVLDVG-AG-TGILSLFCAKA---GAAHVYAVECSQ-MANMAKQI 163 (405)
Q Consensus 118 ~~~~~~~~VLDiG-cG-~G~l~~~la~~---g~~~V~~vD~s~-~~~~a~~~ 163 (405)
....++.+||-+| +| .|.++..+++. |+.+|+++|.++ -++.|++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 3456788999997 45 47777777874 456899999999 88888775
No 373
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=87.04 E-value=1.2 Score=43.53 Aligned_cols=94 Identities=24% Similarity=0.309 Sum_probs=57.4
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc----cc-CCCCc
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----IE-LPVTK 189 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~-~~~~~ 189 (405)
....++.+||-.|+|. |.++..+|+ .|+.+|+++|.++ ..+.+++. +. -.++..+-.. +. .....
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~---~~~i~~~~~~~~~~v~~~~~~~ 254 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GA---THVINPKEEDLVAAIREITGGG 254 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CC---cEEecCCCcCHHHHHHHHhCCC
Confidence 3456788999998765 666777777 6787899999998 77766542 32 1222211111 10 11356
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+|+-.. + .. ..+....+.|+++|.++.
T Consensus 255 ~d~vld~~-g----~~----~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 255 VDYALDTT-G----VP----AVIEQAVDALAPRGTLAL 283 (365)
T ss_pred CcEEEECC-C----Cc----HHHHHHHHHhccCCEEEE
Confidence 99998521 1 11 234455678899999873
No 374
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=86.79 E-value=4.7 Score=38.38 Aligned_cols=94 Identities=26% Similarity=0.268 Sum_probs=57.1
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc----cCCCCce
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~ 190 (405)
....++.+||.+|+|. |..+..+++ .|.+.|++++.++ ..+.+++. +.. .++..+-... ......+
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT---ETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe---EEecCCCCCHHHHHHhcCCCC
Confidence 4567788999998753 556666666 5665589999988 87776442 321 2232221111 1123579
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+++... + . ...+....+.|+++|.++-
T Consensus 228 d~v~~~~-~----~----~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 228 DVVIEAT-G----V----PKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred cEEEECC-C----C----hHHHHHHHHHHhcCCEEEE
Confidence 9999631 1 1 1334455678899998873
No 375
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=86.70 E-value=3 Score=40.34 Aligned_cols=44 Identities=34% Similarity=0.364 Sum_probs=34.9
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHH
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~ 162 (405)
....++.+||-+|+|. |.++..+|+ .|+ +|+++|.++ -++.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 4567789999999976 677777777 566 799999999 8877765
No 376
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.68 E-value=3.8 Score=43.94 Aligned_cols=99 Identities=17% Similarity=0.222 Sum_probs=66.4
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc-------C-C--------CCcEEEEEccccccc
Q 015534 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEIE 184 (405)
Q Consensus 124 ~~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~ 184 (405)
.+|.-||+|+ ..++..++..|. .|+.+|.++ .++.+.+.+... + + -.++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF- 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh-
Confidence 5799999999 366777888877 999999999 988776654321 1 1 1234433 233222
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCcee
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (405)
...|+|+=.. ......-..++..+.++++|+.+|.-++.++
T Consensus 391 ---~~aDlViEav----~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl 431 (715)
T PRK11730 391 ---ERVDVVVEAV----VENPKVKAAVLAEVEQKVREDTILASNTSTI 431 (715)
T ss_pred ---cCCCEEEecc----cCcHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 5789888432 2233455688999999999998876555443
No 377
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=86.66 E-value=1.5 Score=42.08 Aligned_cols=92 Identities=27% Similarity=0.347 Sum_probs=55.1
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc---ccc-c--cCCCCc
Q 015534 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK---IEE-I--ELPVTK 189 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d---~~~-~--~~~~~~ 189 (405)
...++.+||..|+|. |..+..+|+ .|..+|++++.++ ..+.+++. +. ..++... ..+ + ..+.+.
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~---~~vi~~~~~~~~~~i~~~~~~~~ 236 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GA---TDIINPKNGDIVEQILELTGGRG 236 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CC---cEEEcCCcchHHHHHHHHcCCCC
Confidence 456788999987753 666677777 5656899998888 77666543 22 1222221 111 1 122357
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+|+++... + . ...+....+.|+++|+++
T Consensus 237 ~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 237 VDCVIEAV-G----F----EETFEQAVKVVRPGGTIA 264 (347)
T ss_pred CcEEEEcc-C----C----HHHHHHHHHHhhcCCEEE
Confidence 99998521 1 1 124455568889999987
No 378
>PRK05854 short chain dehydrogenase; Provisional
Probab=86.10 E-value=4.5 Score=38.54 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CC
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (405)
..++++|-.|++.| .++..+++.|+ +|+.+.-++ -.+.+.+.+....-..++.++..|+.+.. -.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 45789999998877 34555666776 899888887 55555444433221235888999987643 01
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
.++.|++|.+.
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 25789999864
No 379
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=86.09 E-value=1 Score=46.16 Aligned_cols=98 Identities=21% Similarity=0.223 Sum_probs=59.5
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH-cC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccccc--------CCC
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LPV 187 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~-~g-~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~ 187 (405)
.-+.++..|||+||..|.+...+++ .| ..-|+|||+-|+ ..+++ +.-++.|++.-. +..
T Consensus 40 ~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi----------kp~~~-c~t~v~dIttd~cr~~l~k~l~t 108 (780)
T KOG1098|consen 40 KFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI----------KPIPN-CDTLVEDITTDECRSKLRKILKT 108 (780)
T ss_pred ccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec----------ccCCc-cchhhhhhhHHHHHHHHHHHHHh
Confidence 3456788999999999999999999 44 347999999771 12222 333344443321 123
Q ss_pred CceeEEEEcccccccc---ChhhH-----HHHHHHHHhcccCCcEEE
Q 015534 188 TKVDIIISEWMGYFLL---FENML-----NTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~---~~~~~-----~~~l~~~~~~LkpgG~li 226 (405)
-+.|+|+..+..++.. +.... -..+.....+|..||.++
T Consensus 109 ~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 109 WKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred CCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 5679999865433221 11111 123344457888999865
No 380
>PRK06701 short chain dehydrogenase; Provisional
Probab=86.00 E-value=8.3 Score=36.25 Aligned_cols=74 Identities=28% Similarity=0.433 Sum_probs=46.7
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH--HHHHHHHHHHHcCCCCcEEEEEccccccc-----CC----
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP---- 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~---- 186 (405)
.++++||-.|++.| .++..+++.|+ +|+.++.++ ..+.....+...+ .++.++.+|+.+.. +.
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 45789999998776 34555566776 788887763 3333334444333 35788889886543 10
Q ss_pred -CCceeEEEEcc
Q 015534 187 -VTKVDIIISEW 197 (405)
Q Consensus 187 -~~~~D~Iv~~~ 197 (405)
-+.+|+||.+.
T Consensus 121 ~~~~iD~lI~~A 132 (290)
T PRK06701 121 ELGRLDILVNNA 132 (290)
T ss_pred HcCCCCEEEECC
Confidence 14689998753
No 381
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=85.81 E-value=2 Score=38.29 Aligned_cols=33 Identities=33% Similarity=0.467 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEech
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 154 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s 154 (405)
.+.+||-+|||. | ..+..|++.|.++++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 557899999995 4 56777888999999999977
No 382
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=85.80 E-value=4.4 Score=43.49 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=66.1
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc-------C-C--------CCcEEEEEccccccc
Q 015534 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEIE 184 (405)
Q Consensus 124 ~~VLDiGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~ 184 (405)
++|--||+|+= .++..++..|. .|+.+|.++ .++.+.+++... + + -.++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 390 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAGF- 390 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh-
Confidence 47999999973 66777778877 999999999 888877655321 1 1 0233332 122222
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCcee
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (405)
...|+|+=.. ......-..++.++.++++|+.+|.-++.++
T Consensus 391 ---~~aDlViEav----~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l 431 (714)
T TIGR02437 391 ---DNVDIVVEAV----VENPKVKAAVLAEVEQHVREDAILASNTSTI 431 (714)
T ss_pred ---cCCCEEEEcC----cccHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 5789998432 2333456789999999999998887655443
No 383
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=85.72 E-value=5.7 Score=34.84 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=72.4
Q ss_pred hcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH----cC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEE
Q 015534 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVIT 174 (405)
Q Consensus 101 l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~----~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~ 174 (405)
++.....-.|...|.+ .++..|+|+|.-.|..+++.|. .| ..+|+++|++- .++-+... . .+|.
T Consensus 52 ~k~p~D~~~yQellw~----~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~ 121 (237)
T COG3510 52 IKSPSDMWNYQELLWE----LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDIL 121 (237)
T ss_pred cCCHHHHHHHHHHHHh----cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeE
Confidence 3344444455555553 3567899999999987777765 34 24999999987 54333221 2 4599
Q ss_pred EEEcccccccC-------CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 175 VLKGKIEEIEL-------PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 175 ~~~~d~~~~~~-------~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
|+.++..+... ..+.--+.+|.-. -++-...-+-++....+|.-|-.++..+.
T Consensus 122 f~egss~dpai~eqi~~~~~~y~kIfvilDs---dHs~~hvLAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 122 FIEGSSTDPAIAEQIRRLKNEYPKIFVILDS---DHSMEHVLAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred EEeCCCCCHHHHHHHHHHhcCCCcEEEEecC---CchHHHHHHHHHHhhhHhhcCceEEEecc
Confidence 99999887541 2233344444222 22223444666777888888988876554
No 384
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=85.63 E-value=5.1 Score=43.00 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=65.3
Q ss_pred CEEEEEcCCC--cHHHHHHH-HcCCCeEEEEechH-HHHHHHHHHHHc-------C-CC--------CcEEEEEcccccc
Q 015534 124 KVVLDVGAGT--GILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEAN-------G-FS--------NVITVLKGKIEEI 183 (405)
Q Consensus 124 ~~VLDiGcG~--G~l~~~la-~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~ 183 (405)
++|.-||+|+ ..++..++ ..|. .|+.+|.++ .++.+.+++... + +. .+|++. .|...+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~ 387 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRGF 387 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHHh
Confidence 5899999998 35666666 6676 999999999 888876655331 1 11 234443 222222
Q ss_pred cCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCce
Q 015534 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
...|+|+=.. ......-..++..+.++++|+.+|.-++.+
T Consensus 388 ----~~aDlViEav----~E~~~~K~~v~~~le~~~~~~~ilasnTS~ 427 (708)
T PRK11154 388 ----KHADVVIEAV----FEDLALKQQMVAEVEQNCAPHTIFASNTSS 427 (708)
T ss_pred ----ccCCEEeecc----cccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 5689888432 333355578999999999999888755544
No 385
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=85.45 E-value=3.6 Score=44.30 Aligned_cols=98 Identities=12% Similarity=0.126 Sum_probs=66.1
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc-------C-CC--------CcEEEEEccccccc
Q 015534 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-FS--------NVITVLKGKIEEIE 184 (405)
Q Consensus 124 ~~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~ 184 (405)
.+|--||+|+ +.++..++..|. .|+.+|.++ .++.+.+++... + +. .++++. .|...+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSGF- 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh-
Confidence 5799999997 356677777877 999999999 988877665432 1 11 234333 233222
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCce
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
...|+|+=.. ......-..++..+.++++|+.+|.-++.+
T Consensus 413 ---~~aDlViEAv----~E~l~~K~~vf~~l~~~~~~~~ilasNTSs 452 (737)
T TIGR02441 413 ---KNADMVIEAV----FEDLSLKHKVIKEVEAVVPPHCIIASNTSA 452 (737)
T ss_pred ---ccCCeehhhc----cccHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 5788888322 333355678999999999999988755544
No 386
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=85.27 E-value=6.5 Score=32.89 Aligned_cols=81 Identities=25% Similarity=0.319 Sum_probs=44.7
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (405)
+..++.......++++|+-+|||. | .++..+++.|...|+.+|.++ ..+.+.+...... +.....+..+.
T Consensus 6 ~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~--- 78 (155)
T cd01065 6 FVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL--- 78 (155)
T ss_pred HHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc---
Confidence 444455433335678999999974 1 333344445556899999988 5554433332211 11222233322
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
.+.+|+|++..
T Consensus 79 ~~~~Dvvi~~~ 89 (155)
T cd01065 79 LAEADLIINTT 89 (155)
T ss_pred cccCCEEEeCc
Confidence 26799999854
No 387
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=85.23 E-value=6 Score=38.09 Aligned_cols=96 Identities=25% Similarity=0.186 Sum_probs=57.3
Q ss_pred ccCCCCCCEEEEEcCCC--cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCc
Q 015534 117 NKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTK 189 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~--G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~ 189 (405)
.....++.+||-.|+.. |.++..+|+ .|+ .++++-.++ -.+.+++ .|-...+.+...|+.+-. .....
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 35567799999999544 588888888 666 666666655 4445544 343222333344332221 22247
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+|+... + ...+....+.|+++|.++.
T Consensus 212 vDvv~D~v------G----~~~~~~~l~~l~~~G~lv~ 239 (326)
T COG0604 212 VDVVLDTV------G----GDTFAASLAALAPGGRLVS 239 (326)
T ss_pred ceEEEECC------C----HHHHHHHHHHhccCCEEEE
Confidence 99999632 1 1233445578899999874
No 388
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=85.19 E-value=4.9 Score=38.26 Aligned_cols=87 Identities=20% Similarity=0.170 Sum_probs=51.9
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCC-CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.+|.-||+|. | .++..+.+.|. .+|+++|.++ .++.+++ .+.. .. ...+..+. ...+|+|+....
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~--~~-~~~~~~~~---~~~aDvViiavp- 75 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLG--DR-VTTSAAEA---VKGADLVILCVP- 75 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCC--ce-ecCCHHHH---hcCCCEEEECCC-
Confidence 5799999887 2 44555556664 4899999998 7766543 3321 11 11222221 146899987432
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
......++..+...+++|+.++
T Consensus 76 -----~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 76 -----VGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred -----HHHHHHHHHHHHhhCCCCCEEE
Confidence 1233455666667788887654
No 389
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.11 E-value=6 Score=38.02 Aligned_cols=97 Identities=25% Similarity=0.286 Sum_probs=57.5
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc-------cccccCC
Q 015534 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-------IEEIELP 186 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-------~~~~~~~ 186 (405)
.....++.+||-.|+|. |..+..+|+ .|+..|++++.++ ..+.+++. +....+.....+ +... ..
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~-~~ 231 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAEL-LG 231 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHH-hC
Confidence 34567888999988765 666667777 6775599999888 77776552 321111111111 1111 23
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
...+|+|+... + . ...+....+.|+++|+++.
T Consensus 232 ~~~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 232 GKGPDVVIECT-G----A----ESCIQTAIYATRPGGTVVL 263 (343)
T ss_pred CCCCCEEEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 35699998521 1 1 1134555678899999873
No 390
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=85.09 E-value=4.1 Score=39.12 Aligned_cols=97 Identities=20% Similarity=0.147 Sum_probs=57.7
Q ss_pred ccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc-cccc-c-cCCCCc
Q 015534 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEE-I-ELPVTK 189 (405)
Q Consensus 117 ~~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~ 189 (405)
.....+|.+||-.|+ |.|.++..+|+ .|+ +|++++.++ -.+.+++. .|....+..... +..+ + ......
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCCC
Confidence 345678999999997 34677777777 666 799998888 77776652 233211111111 2111 1 011257
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+|+-. ++ . ..+....+.|+++|.++.
T Consensus 222 vd~v~d~-~g-------~--~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 222 IDIYFDN-VG-------G--KMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred cEEEEEC-CC-------H--HHHHHHHHHhccCcEEEE
Confidence 9999852 11 1 234455688999999873
No 391
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.95 E-value=11 Score=33.71 Aligned_cols=72 Identities=21% Similarity=0.309 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CC-----C
Q 015534 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP-----V 187 (405)
Q Consensus 122 ~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 187 (405)
++++||-.|++.| .++..+++.|+ +|++++.++ -...+.+..... .++.++.+|+.+.. +. -
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4679999998754 33444455677 899999988 665554444332 24788888887532 00 1
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
+.+|.++...
T Consensus 80 ~~id~ii~~a 89 (238)
T PRK05786 80 NAIDGLVVTV 89 (238)
T ss_pred CCCCEEEEcC
Confidence 3578888754
No 392
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=84.91 E-value=4 Score=38.88 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=55.2
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC----CcEEEEEcccccccCCCCceeEEEEc
Q 015534 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS----NVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 124 ~~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
.+|+-+|+|. |.++..|++.|. .|+.++-++ .++..++. .|+. .....+...... +.+.+.+|+|+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~-~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAET-ADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCC-cccccccCEEEEE
Confidence 4799999997 477888888876 899999876 55544331 2220 000011100000 1112579998862
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
. -......++..+...+.++..+++
T Consensus 78 v------K~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 78 C------KAYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred C------CHHhHHHHHHHHHhhCCCCCEEEE
Confidence 1 112456677778888889887765
No 393
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=84.89 E-value=2.1 Score=41.29 Aligned_cols=97 Identities=22% Similarity=0.260 Sum_probs=55.9
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc-c--cCCCCcee
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I--ELPVTKVD 191 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~~D 191 (405)
....++.+||-.|+|. |.++..+++ .|+.+|++++.++ ..+.+++. |....+.....+..+ + ..+.+.+|
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCCCC
Confidence 4456788999998653 455555666 5666899999888 77777542 321111111111111 1 01224599
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+-.. + . ...+....+.|+++|.++.
T Consensus 244 ~vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 244 VSFDCA-G----V----QATLDTAIDALRPRGTAVN 270 (351)
T ss_pred EEEECC-C----C----HHHHHHHHHhccCCCEEEE
Confidence 998521 1 1 1234555678999998874
No 394
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=84.75 E-value=2.7 Score=34.19 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCCc-HHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEE
Q 015534 122 KDKVVLDVGAGTG-ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIIS 195 (405)
Q Consensus 122 ~~~~VLDiGcG~G-~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~ 195 (405)
...+|+|||-|.= ..+..|.+.|. .|+++|+.+. .+. .| +.++..|+.+-.+. -...|+|.+
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~------~a~-~g----~~~v~DDif~P~l~iY~~a~lIYS 76 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR------KAP-EG----VNFVVDDIFNPNLEIYEGADLIYS 76 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S-----------S----TTEE---SSS--HHHHTTEEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc------ccc-cC----cceeeecccCCCHHHhcCCcEEEE
Confidence 3349999999985 55777777885 9999999982 111 22 67888888764322 257999998
No 395
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.61 E-value=7 Score=37.18 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=55.2
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc-CC----------CCcEEEEEcccccccCCCCc
Q 015534 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-GF----------SNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 124 ~~VLDiGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-~~----------~~~i~~~~~d~~~~~~~~~~ 189 (405)
++|.-||+|.- .++..+++.|. +|+.+|.++ .++.+++.+... +. ..++++ ..|..+. ...
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~---~~~ 79 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA---VSG 79 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH---hcc
Confidence 46888999963 55666666766 899999999 877776542211 10 011222 1222221 146
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.|+|+.... ........++..+..+++++.+++-.
T Consensus 80 aDlVi~av~----~~~~~~~~v~~~l~~~~~~~~ii~s~ 114 (311)
T PRK06130 80 ADLVIEAVP----EKLELKRDVFARLDGLCDPDTIFATN 114 (311)
T ss_pred CCEEEEecc----CcHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 899986321 11123456777777777776655433
No 396
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=84.39 E-value=6.9 Score=38.03 Aligned_cols=93 Identities=19% Similarity=0.168 Sum_probs=54.8
Q ss_pred CCCCCCEEEEEcCC-CcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc------cCCCCc
Q 015534 119 FLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI------ELPVTK 189 (405)
Q Consensus 119 ~~~~~~~VLDiGcG-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~ 189 (405)
...++.+||-.|+| .|.++..+++ .|+..|++++.++ ..+.+++ .+. ..++..+-..+ ..+...
T Consensus 184 ~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~---~~v~~~~~~~~~~~l~~~~~~~~ 256 (367)
T cd08263 184 DVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGA---THTVNAAKEDAVAAIREITGGRG 256 (367)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCC---ceEecCCcccHHHHHHHHhCCCC
Confidence 34677888887765 3555566666 6775699999888 7776644 232 12332221111 122356
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+|+...- . . ..+....++|+++|.++-
T Consensus 257 ~d~vld~vg-----~-~---~~~~~~~~~l~~~G~~v~ 285 (367)
T cd08263 257 VDVVVEALG-----K-P---ETFKLALDVVRDGGRAVV 285 (367)
T ss_pred CCEEEEeCC-----C-H---HHHHHHHHHHhcCCEEEE
Confidence 999985321 1 1 134555688999999873
No 397
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.29 E-value=9.5 Score=36.19 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=80.6
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCC--CCcEEEEEccccc
Q 015534 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKIEE 182 (405)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~--~~~i~~~~~d~~~ 182 (405)
.|...+-+.+....... -..|+-||||-=.=+..+-.....+|+-+|.-++++.=++.+...+. +...+++..|+.+
T Consensus 76 ~Rtr~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~ 154 (297)
T COG3315 76 ARTRYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLRE 154 (297)
T ss_pred HHHHHHHHHHHHHHHhc-ccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccc
Confidence 34544444444433323 46899999986433322222112478888887777777777777663 3468999999984
Q ss_pred cc---------CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 183 IE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 183 ~~---------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
-. +.....-+++++.+..++ .+.....++..+...+.||-.++...
T Consensus 155 ~dw~~~L~~~G~d~~~pt~~iaEGLl~YL-~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 155 DDWPQALAAAGFDRSRPTLWIAEGLLMYL-PEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred cchHHHHHhcCCCcCCCeEEEeccccccC-CHHHHHHHHHHHHHhCCCCceEEEec
Confidence 32 123556688888876666 45677899999999888888777543
No 398
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=84.04 E-value=2.5 Score=41.53 Aligned_cols=97 Identities=27% Similarity=0.249 Sum_probs=55.5
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc---cc----ccccCCC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG---KI----EEIELPV 187 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~---d~----~~~~~~~ 187 (405)
....++.+||-.|+|. |..+..+|+ .|+.+|++++.++ -.+.+++ .|....+..... +. ..+ .+.
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~-~~g 273 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEV-TKG 273 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHh-cCC
Confidence 3566788999888754 455555666 6766899999888 6665554 343211111100 11 111 223
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
..+|+|+.. .+ .....+....+.|+++|+++-
T Consensus 274 ~gvDvvld~-~g-------~~~~~~~~~~~~l~~~G~~v~ 305 (384)
T cd08265 274 WGADIQVEA-AG-------APPATIPQMEKSIAINGKIVY 305 (384)
T ss_pred CCCCEEEEC-CC-------CcHHHHHHHHHHHHcCCEEEE
Confidence 569999852 11 112334455678899999873
No 399
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=83.85 E-value=5.9 Score=36.61 Aligned_cols=92 Identities=24% Similarity=0.235 Sum_probs=55.5
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
....++.+||-.|+|. |..+..+|+ .|..+|++++.++ ..+.+++. |..+.+ +... ... .....+|+|+
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~~-~~~-~~~~~~d~vl 164 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPV--AADT-ADE-IGGRGADVVI 164 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccc--cccc-hhh-hcCCCCCEEE
Confidence 4567788999998865 666666677 5664599999988 77766653 211111 1110 011 1235699998
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.... . ...+....+.|+++|.++
T Consensus 165 ~~~~-----~----~~~~~~~~~~l~~~g~~~ 187 (277)
T cd08255 165 EASG-----S----PSALETALRLLRDRGRVV 187 (277)
T ss_pred EccC-----C----hHHHHHHHHHhcCCcEEE
Confidence 5211 1 123445567889999987
No 400
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=83.83 E-value=13 Score=35.00 Aligned_cols=98 Identities=22% Similarity=0.307 Sum_probs=59.1
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHH-------HcCCC---------CcEEEEEccccccc
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVE-------ANGFS---------NVITVLKGKIEEIE 184 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~-------~~~~~---------~~i~~~~~d~~~~~ 184 (405)
++|.-||+|. | .++..++..|. .|+.+|.++ .++.+++.+. ..+.- .++.+ ..+.+.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~- 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNLEEL- 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCHHHh-
Confidence 4688899996 3 55666667775 999999999 8776655432 22210 11222 2232222
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCce
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
...|+|+... .........++..+...++|+.+++-...+
T Consensus 82 ---~~aD~Vieav----~e~~~~k~~v~~~l~~~~~~~~il~s~tS~ 121 (295)
T PLN02545 82 ---RDADFIIEAI----VESEDLKKKLFSELDRICKPSAILASNTSS 121 (295)
T ss_pred ---CCCCEEEEcC----ccCHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 5689998632 222344566777788888888877644433
No 401
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=83.53 E-value=2.9 Score=40.79 Aligned_cols=96 Identities=22% Similarity=0.240 Sum_probs=55.8
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc--cc----ccccCCC
Q 015534 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG--KI----EEIELPV 187 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~--d~----~~~~~~~ 187 (405)
.....++.+||-.|+|. |.++..+|+ .|+..|++++.++ -.+.+++. |....+..... +. ..+ .+
T Consensus 178 ~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~~~l~~~-~~- 251 (365)
T cd05279 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL----GATECINPRDQDKPIVEVLTEM-TD- 251 (365)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCCeecccccccchHHHHHHHH-hC-
Confidence 34567788999988754 455555666 6776799999888 77776542 32111111111 11 111 23
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhccc-CCcEEEe
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLV-DDGIVLP 227 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~lip 227 (405)
+.+|+|+.. .+ . ...+....+.|+ ++|.++.
T Consensus 252 ~~~d~vid~-~g-------~-~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 252 GGVDYAFEV-IG-------S-ADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred CCCcEEEEC-CC-------C-HHHHHHHHHHhccCCCEEEE
Confidence 569999852 11 1 123444557788 9999874
No 402
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=83.42 E-value=9.1 Score=36.27 Aligned_cols=93 Identities=23% Similarity=0.130 Sum_probs=57.5
Q ss_pred ccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-----cCCC
Q 015534 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-----ELPV 187 (405)
Q Consensus 117 ~~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~ 187 (405)
.....+|.+||-.|+ |.|..+..+|+ .|+ +|++++.++ -.+.+++ .|.. .++...-.++ ....
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~~~~ 209 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFD---AVFNYKTVSLEEALKEAAP 209 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHHCC
Confidence 345678899999984 44677777788 566 799999888 7777655 3432 2222211111 0112
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.+|+|+... + . ..+....+.|+++|.++.
T Consensus 210 ~gvd~vld~~-g-------~--~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 210 DGIDCYFDNV-G-------G--EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred CCcEEEEECC-C-------H--HHHHHHHHhhccCCEEEE
Confidence 5699998521 1 1 234555688999999873
No 403
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=83.35 E-value=3.3 Score=40.42 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=35.7
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHH
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~ 162 (405)
....++.+||-.|+|. |.++..+|+ .|+.+|+++|.++ -.+.|++
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4567889999999875 666777777 6776899999999 8887755
No 404
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=83.33 E-value=3.5 Score=39.95 Aligned_cols=75 Identities=28% Similarity=0.279 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH----------------------HHHHHHHHHHHcCCCCcEEEEE
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ----------------------MANMAKQIVEANGFSNVITVLK 177 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~----------------------~~~~a~~~~~~~~~~~~i~~~~ 177 (405)
.+.+||-||||. | .++..|++.|..+++.+|.+. -++.|++.+.+..-.-+++.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 457899999995 4 567788889999999999862 2344455555544333456666
Q ss_pred cccccccC--CCCceeEEEEc
Q 015534 178 GKIEEIEL--PVTKVDIIISE 196 (405)
Q Consensus 178 ~d~~~~~~--~~~~~D~Iv~~ 196 (405)
.++....+ --..+|+|+..
T Consensus 103 ~~~~~~~~~~~~~~~DlVid~ 123 (338)
T PRK12475 103 TDVTVEELEELVKEVDLIIDA 123 (338)
T ss_pred ccCCHHHHHHHhcCCCEEEEc
Confidence 55532111 12569999973
No 405
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=83.32 E-value=6.7 Score=38.11 Aligned_cols=93 Identities=20% Similarity=0.130 Sum_probs=51.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
..++.+||-.|+|. |.++..+|+ .|+ +|++++.++ ....+.+ ..|.. ..+...+...+......+|+|+-.
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~---~~Ga~--~~i~~~~~~~~~~~~~~~D~vid~ 251 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALE---HLGAD--DYLVSSDAAEMQEAADSLDYIIDT 251 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH---hcCCc--EEecCCChHHHHHhcCCCcEEEEC
Confidence 35788999888765 566667777 566 788888776 5444432 23431 111111111111011358888842
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
. + . ...+....+.|+++|+++.
T Consensus 252 ~-g----~----~~~~~~~~~~l~~~G~iv~ 273 (357)
T PLN02514 252 V-P----V----FHPLEPYLSLLKLDGKLIL 273 (357)
T ss_pred C-C----c----hHHHHHHHHHhccCCEEEE
Confidence 1 1 1 1234445578899998874
No 406
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=83.11 E-value=2.8 Score=40.23 Aligned_cols=94 Identities=22% Similarity=0.262 Sum_probs=55.9
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc---ccccc--CCCCc
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK---IEEIE--LPVTK 189 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d---~~~~~--~~~~~ 189 (405)
....++.+||..|+|. |..+..+|+ .|...|++++.++ ..+.+++ .+.. .++..+ ...+. .+...
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~---~~~~~~~~~~~~~~~~~~~~~ 227 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD---DTINPKEEDVEKVRELTEGRG 227 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEecCccccHHHHHHHhCCCC
Confidence 4456788999998765 666666677 6665599999888 7766643 2321 222211 11111 22245
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+++... +. ...+....+.|+++|.++.
T Consensus 228 ~d~vld~~------g~---~~~~~~~~~~l~~~G~~v~ 256 (343)
T cd08236 228 ADLVIEAA------GS---PATIEQALALARPGGKVVL 256 (343)
T ss_pred CCEEEECC------CC---HHHHHHHHHHhhcCCEEEE
Confidence 99998531 11 1234555688899999773
No 407
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=83.01 E-value=12 Score=36.03 Aligned_cols=92 Identities=25% Similarity=0.298 Sum_probs=54.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc----cc-CCCCcee
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----IE-LPVTKVD 191 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~-~~~~~~D 191 (405)
..++.+||-.|+|. |..+..+|+ .|+++|++++.++ ..+.+++ .|.. .++..+-.. +. ...+.+|
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAAGGGVD 245 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHhCCCCc
Confidence 34678899988754 566666666 6777899999888 7777643 2331 222221111 11 1113689
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+++... + . ...+....+.|+++|.++-
T Consensus 246 ~vid~~-g----~----~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 246 AVIDFV-N----N----SATASLAFDILAKGGKLVL 272 (350)
T ss_pred EEEECC-C----C----HHHHHHHHHHhhcCCeEEE
Confidence 998521 1 1 1234555688899998873
No 408
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=82.98 E-value=7.4 Score=41.69 Aligned_cols=98 Identities=19% Similarity=0.105 Sum_probs=63.4
Q ss_pred CEEEEEcCCCc--HHHHHHH-HcCCCeEEEEechH-HHHHHHHHHHH-------cC-C--------CCcEEEEEcccccc
Q 015534 124 KVVLDVGAGTG--ILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEA-------NG-F--------SNVITVLKGKIEEI 183 (405)
Q Consensus 124 ~~VLDiGcG~G--~l~~~la-~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~-~--------~~~i~~~~~d~~~~ 183 (405)
++|.-||+|+= .++..++ ..|. .|+.+|.++ .++.+.+++.. .+ + ..+|++. .|...+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~ 382 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDYRGF 382 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CChHHh
Confidence 47999999983 4445555 4676 999999999 88887665432 11 1 1234433 233222
Q ss_pred cCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCce
Q 015534 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
...|+|+=.. ......-..++..+.++++|+.+|.-++.+
T Consensus 383 ----~~adlViEav----~E~l~~K~~v~~~l~~~~~~~~ilasnTS~ 422 (699)
T TIGR02440 383 ----KDVDIVIEAV----FEDLALKHQMVKDIEQECAAHTIFASNTSS 422 (699)
T ss_pred ----ccCCEEEEec----cccHHHHHHHHHHHHhhCCCCcEEEeCCCC
Confidence 5789888432 223345568899999999999887655443
No 409
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=82.44 E-value=9.2 Score=36.26 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=50.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHH-HcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la-~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
...+++|+-||+|. |......+ ..|+ +|+.+|.++ ..+.++. .+ .+++. ..++..--..+|+|+..
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~----~G----~~~~~--~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITE----MG----LSPFH--LSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cC----Ceeec--HHHHHHHhCCCCEEEEC
Confidence 34689999999986 33333333 3676 999999998 6555432 33 22221 11111111579999974
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.. . . .+-......++||+.++
T Consensus 218 ~p-~-----~---~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 218 IP-A-----L---VLTKEVLSKMPPEALII 238 (296)
T ss_pred CC-h-----h---hhhHHHHHcCCCCcEEE
Confidence 21 1 1 12234456788988877
No 410
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=82.26 E-value=3 Score=35.13 Aligned_cols=53 Identities=21% Similarity=0.189 Sum_probs=31.2
Q ss_pred EEcCCCc--HHHHHHH--Hc-CCCeEEEEechH-HHHHHHHH--HHHcCCCCcEEEEEccc
Q 015534 128 DVGAGTG--ILSLFCA--KA-GAAHVYAVECSQ-MANMAKQI--VEANGFSNVITVLKGKI 180 (405)
Q Consensus 128 DiGcG~G--~l~~~la--~~-g~~~V~~vD~s~-~~~~a~~~--~~~~~~~~~i~~~~~d~ 180 (405)
|||++.| .....++ .. +..+|+++|+++ .++..+++ +..+.....+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 4444443 33 356899999999 99999988 66664433355555443
No 411
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=81.67 E-value=10 Score=35.79 Aligned_cols=90 Identities=17% Similarity=0.109 Sum_probs=54.0
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
....++.+||-.|+|. |..+..+++ .|+ +|++++.++ ..+.+++ .|... +... ... ...+.+|+++
T Consensus 151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~~-~~~~----~~~-~~~~~~d~vi 219 (319)
T cd08242 151 VPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR----LGVET-VLPD----EAE-SEGGGFDVVV 219 (319)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----cCCcE-EeCc----ccc-ccCCCCCEEE
Confidence 4566788999998653 444455555 566 699999988 8887765 34321 1111 111 2335799998
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
... .. ...+....+.|+++|.++.
T Consensus 220 d~~-----g~----~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 220 EAT-----GS----PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred ECC-----CC----hHHHHHHHHHhhcCCEEEE
Confidence 521 11 1233444577899998873
No 412
>PRK07063 short chain dehydrogenase; Provisional
Probab=81.44 E-value=8 Score=35.40 Aligned_cols=76 Identities=17% Similarity=0.266 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++...+.+...+...++.++..|+.+... .
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35678999998776 34555666777 899999988 666665555542223458888888866420 1
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
.+.+|++|.+.
T Consensus 84 ~g~id~li~~a 94 (260)
T PRK07063 84 FGPLDVLVNNA 94 (260)
T ss_pred hCCCcEEEECC
Confidence 25789999753
No 413
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=81.42 E-value=2.4 Score=42.30 Aligned_cols=91 Identities=22% Similarity=0.294 Sum_probs=51.7
Q ss_pred CCCCCEEEEEcCCC-cHH-HHHHHHcCCCeEE------EEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 120 LFKDKVVLDVGAGT-GIL-SLFCAKAGAAHVY------AVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l-~~~la~~g~~~V~------~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
...+++|+-||||+ |.. +.-+...|. +|+ ++|... ..+.| ...|+. ..+..+. -...
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGv-nVvvglr~~~id~~~~s~~kA----~~dGF~------v~~~~Ea---~~~A 98 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGL-DISYALRKEAIAEKRASWRKA----TENGFK------VGTYEEL---IPQA 98 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccc-eeEEeccccccccccchHHHH----HhcCCc------cCCHHHH---HHhC
Confidence 35789999999998 331 111111244 333 334334 44333 334542 1344433 2689
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
|+|+.-.. .+ ....+...+...||||..|.++..
T Consensus 99 DvVviLlP-----Dt-~q~~v~~~i~p~LK~Ga~L~fsHG 132 (487)
T PRK05225 99 DLVINLTP-----DK-QHSDVVRAVQPLMKQGAALGYSHG 132 (487)
T ss_pred CEEEEcCC-----hH-HHHHHHHHHHhhCCCCCEEEecCC
Confidence 99997432 22 244556888899999998886543
No 414
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=80.82 E-value=6.2 Score=39.87 Aligned_cols=85 Identities=22% Similarity=0.318 Sum_probs=51.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
...|++|+-+|+|. |......++ .|+ +|+.+|.++ ....|.. .| +++. ++.++. ..+|+|++.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~----~G----~~~~--~leell---~~ADIVI~a 316 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAM----EG----YQVV--TLEDVV---ETADIFVTA 316 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHh----cC----ceec--cHHHHH---hcCCEEEEC
Confidence 46789999999997 433333333 566 899999888 5433322 23 2222 333332 578999974
Q ss_pred cccccccChhhHHHHH-HHHHhcccCCcEEEe
Q 015534 197 WMGYFLLFENMLNTVL-YARDKWLVDDGIVLP 227 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l-~~~~~~LkpgG~lip 227 (405)
. + . ..++ ......+|||++++-
T Consensus 317 t-G-------t-~~iI~~e~~~~MKpGAiLIN 339 (476)
T PTZ00075 317 T-G-------N-KDIITLEHMRRMKNNAIVGN 339 (476)
T ss_pred C-C-------c-ccccCHHHHhccCCCcEEEE
Confidence 2 1 1 1122 245578899999884
No 415
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=80.73 E-value=5 Score=38.89 Aligned_cols=74 Identities=31% Similarity=0.372 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH----------------------HHHHHHHHHHHcCCCCcEEEEE
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ----------------------MANMAKQIVEANGFSNVITVLK 177 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~----------------------~~~~a~~~~~~~~~~~~i~~~~ 177 (405)
...+||-+|||. | .++..|++.|..+++.+|.+. -++.|++.+.+.+-.-+++.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~ 102 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV 102 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 456899999995 4 567788889999999999751 2233444444433222355555
Q ss_pred ccccccc---CCCCceeEEEEc
Q 015534 178 GKIEEIE---LPVTKVDIIISE 196 (405)
Q Consensus 178 ~d~~~~~---~~~~~~D~Iv~~ 196 (405)
.++.... + -..+|+|+..
T Consensus 103 ~~~~~~~~~~~-~~~~DlVid~ 123 (339)
T PRK07688 103 QDVTAEELEEL-VTGVDLIIDA 123 (339)
T ss_pred ccCCHHHHHHH-HcCCCEEEEc
Confidence 5543211 1 2569999973
No 416
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=80.72 E-value=5.7 Score=39.08 Aligned_cols=69 Identities=17% Similarity=0.328 Sum_probs=47.2
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---CCceeEEEEcc
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIISEW 197 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Iv~~~ 197 (405)
.+||-||||. | ..+..+|+.+..+|+..|-|. .++.+..... .+++.+..|+.+.+-- -..+|+|++-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 4799999975 4 334455667767999999998 6666554432 2588888888776310 14569999754
No 417
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=80.40 E-value=4.5 Score=38.88 Aligned_cols=96 Identities=20% Similarity=0.277 Sum_probs=54.9
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc----ccccCCCCce
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI----EEIELPVTKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~----~~~~~~~~~~ 190 (405)
....++.+||-.|+|. |..+..+++ .|..+|++++.++ ....+++ .+...-+.....+. ..+ .+...+
T Consensus 162 ~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~-~~~~~~ 236 (345)
T cd08286 162 GKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLEL-TDGRGV 236 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHH-hCCCCC
Confidence 3456788888887643 344555566 5656899999888 7666654 23311122111111 111 223569
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|+... .. ...+..+.+.|+++|.++-
T Consensus 237 d~vld~~--------g~-~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 237 DVVIEAV--------GI-PATFELCQELVAPGGHIAN 264 (345)
T ss_pred CEEEECC--------CC-HHHHHHHHHhccCCcEEEE
Confidence 9998532 11 1235556688999999873
No 418
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=80.36 E-value=18 Score=32.04 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEech
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 154 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s 154 (405)
...+|+-+|||. | ..+..+++.|..+++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 456899999996 3 66788888999899999988
No 419
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=80.33 E-value=11 Score=37.01 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=62.1
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCc-EEEEEcccccccCCCCceeEEEEccccccc
Q 015534 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEIELPVTKVDIIISEWMGYFL 202 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l 202 (405)
.||-|+-.-|.++..++..+. +.+--|- .-...++++..|+++.. ++++.. .+ +++ +.+|+|+.-+ .
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~---~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~--~~-~~~-~~~d~vl~~~----P 115 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKP---YSIGDSYISELATRENLRLNGIDESSVKFLDS--TA-DYP-QQPGVVLIKV----P 115 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCC---CeeehHHHHHHHHHHHHHHcCCCcccceeecc--cc-ccc-CCCCEEEEEe----C
Confidence 799999999999999997544 2331122 44455788999998643 444422 21 234 6699998643 2
Q ss_pred cChhhHHHHHHHHHhcccCCcEEEe
Q 015534 203 LFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
-.-..+...+..+...|.||+.+|.
T Consensus 116 K~~~~l~~~l~~l~~~l~~~~~ii~ 140 (378)
T PRK15001 116 KTLALLEQQLRALRKVVTSDTRIIA 140 (378)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 2334566778888899999999773
No 420
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=79.77 E-value=8.5 Score=32.34 Aligned_cols=72 Identities=31% Similarity=0.305 Sum_probs=51.3
Q ss_pred CEEEEEcCCCc---HHHHHHHHcCCCeEEEEech--H-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CCC
Q 015534 124 KVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS--Q-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LPV 187 (405)
Q Consensus 124 ~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s--~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 187 (405)
++||-.|+++| .++..+++.|..+|+.+..+ . .+....+.+...+ .++.++..|+.+.. ...
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 36889998887 45666667778899999988 4 5555555555555 56999999986642 113
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
++.|+++.+.
T Consensus 79 ~~ld~li~~a 88 (167)
T PF00106_consen 79 GPLDILINNA 88 (167)
T ss_dssp SSESEEEEEC
T ss_pred cccccccccc
Confidence 6899999853
No 421
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=79.62 E-value=9.1 Score=37.56 Aligned_cols=90 Identities=19% Similarity=0.176 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-H-HHHHHHHHHHcCCCCcEEEEE-cccccccCCCCceeEEEE
Q 015534 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-M-ANMAKQIVEANGFSNVITVLK-GKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 121 ~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~-~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~Iv~ 195 (405)
.++.+||-.|+|. |.++..+|+ .|+ +|++++.++ . .+.+++ .|.. .++. .+...+....+.+|+|+-
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~----lGa~---~~i~~~~~~~v~~~~~~~D~vid 248 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDR----LGAD---SFLVTTDSQKMKEAVGTMDFIID 248 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHh----CCCc---EEEcCcCHHHHHHhhCCCcEEEE
Confidence 4788999999875 666777777 566 799998775 3 444433 3431 1221 111111100135898885
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.. + . +..+....+.|++||.++.
T Consensus 249 ~~-G-------~-~~~~~~~~~~l~~~G~iv~ 271 (375)
T PLN02178 249 TV-S-------A-EHALLPLFSLLKVSGKLVA 271 (375)
T ss_pred CC-C-------c-HHHHHHHHHhhcCCCEEEE
Confidence 21 1 1 1234445578899999873
No 422
>PRK08324 short chain dehydrogenase; Validated
Probab=79.62 E-value=14 Score=39.51 Aligned_cols=73 Identities=22% Similarity=0.222 Sum_probs=48.3
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-----C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 186 (405)
..+++||-.|++.| .++..+++.|+ +|+++|.++ -++.+.+.+... .++.++..|+.+.. + .
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 35689999997554 33444555677 899999998 666555444322 35888888886542 1 1
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
.+.+|+||.+.
T Consensus 496 ~g~iDvvI~~A 506 (681)
T PRK08324 496 FGGVDIVVSNA 506 (681)
T ss_pred cCCCCEEEECC
Confidence 24689999853
No 423
>PRK05867 short chain dehydrogenase; Provisional
Probab=79.46 E-value=9.2 Score=34.85 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
..++++|-.|++.| .++..+++.|+ +|+.++.++ .++...+.+...+ .++.++..|+.+... .
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35789999998776 44555666777 899999988 6666655555444 457788888865420 1
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-++.|++|.+.
T Consensus 84 ~g~id~lv~~a 94 (253)
T PRK05867 84 LGGIDIAVCNA 94 (253)
T ss_pred hCCCCEEEECC
Confidence 25789999753
No 424
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=79.44 E-value=4.6 Score=39.28 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=55.7
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc----c--cCCCC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----I--ELPVT 188 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~--~~~~~ 188 (405)
....++.+||-.|+|. |..+..+++ .|..+|++++.++ ..+.+++ .+. ..++..+-.. + ..+..
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~---~~vv~~~~~~~~~~l~~~~~~~ 250 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGA---THTVNASEDDAVEAVRDLTDGR 250 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCC---eEEeCCCCccHHHHHHHHcCCC
Confidence 4456788999988753 556666666 6775699999888 6666543 232 1222221111 1 01235
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+|+++...- . ...+....+.|+++|+++-
T Consensus 251 ~vd~vld~~~-----~----~~~~~~~~~~l~~~G~~v~ 280 (363)
T cd08279 251 GADYAFEAVG-----R----AATIRQALAMTRKGGTAVV 280 (363)
T ss_pred CCCEEEEcCC-----C----hHHHHHHHHHhhcCCeEEE
Confidence 6999885221 1 1234556688899999873
No 425
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=79.38 E-value=7.9 Score=32.09 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=23.8
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCeEEEEech
Q 015534 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 154 (405)
Q Consensus 125 ~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s 154 (405)
+||-+|||. | .++..|++.|..+++.+|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 478899984 4 56777888899899999865
No 426
>PRK07806 short chain dehydrogenase; Provisional
Probab=79.35 E-value=31 Score=31.05 Aligned_cols=103 Identities=20% Similarity=0.158 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH--HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 122 ~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
.+++||-.|++.| .++..+++.|. +|+++..+. ..+.....+...+ .++.++.+|+.+... .
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 5678999997554 23444445666 788877643 3333333333333 347888888876431 0
Q ss_pred CCceeEEEEccccccc----------cChhhHHHHHHHHHhcccCCcEEEe
Q 015534 187 VTKVDIIISEWMGYFL----------LFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l----------~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+.+|+||.+.-.... .+....-.+++.+.+.++.+|.++.
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~ 132 (248)
T PRK07806 82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVF 132 (248)
T ss_pred CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEE
Confidence 1368988865311100 0011123556666666666666553
No 427
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=79.17 E-value=5.8 Score=39.04 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=33.6
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHH
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIV 164 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~ 164 (405)
+.+.++.+||-|.+|.....-. +..+.++|+|||+|| .....+-+.
T Consensus 31 L~i~~~d~vl~ItSaG~N~L~y-L~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 31 LNIGPDDRVLTITSAGCNALDY-LLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred hCCCCCCeEEEEccCCchHHHH-HhcCCceEEEEeCCHHHHHHHHHHH
Confidence 4577899999998766544444 455577999999999 777665444
No 428
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=79.16 E-value=13 Score=35.00 Aligned_cols=91 Identities=24% Similarity=0.209 Sum_probs=51.5
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC---CcEEEEEcccccccCCCCceeEEEEccc
Q 015534 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS---NVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 125 ~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
+|+-||+|. | .++..+++.|. +|+.++.++ .++..++ .++. ........-..+... ...+|+|+...-
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~k 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNE----NGLRLEDGEITVPVLAADDPAE-LGPQDLVILAVK 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHH----cCCcccCCceeecccCCCChhH-cCCCCEEEEecc
Confidence 688999987 3 45666667765 899999876 6554433 2321 111100000111111 157899986421
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
......++..+...+.++..++.
T Consensus 76 ------~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 76 ------AYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred ------cccHHHHHHHHhhhcCCCCEEEE
Confidence 12456677777777877766664
No 429
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=79.11 E-value=6.6 Score=37.48 Aligned_cols=93 Identities=16% Similarity=0.101 Sum_probs=51.4
Q ss_pred CCEEEEEcCCC--cHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCC-----CcEEEEEcccccccCCCCceeEEEE
Q 015534 123 DKVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFS-----NVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 123 ~~~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
..+|+-||+|. |.++..+++.|. .|+.+..++ .+ ....+++. ....+....+.......+.+|+|+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~-~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil 78 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD-YE----AVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLV 78 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC-HH----HHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEE
Confidence 35899999997 467777777775 888887765 11 13333421 0011110001111001257899986
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
..-. .....++..+..++++++.+++
T Consensus 79 avK~------~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 79 GLKT------TANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred EecC------CChHhHHHHHhhhcCCCCEEEE
Confidence 3211 2334566777778888887764
No 430
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=79.10 E-value=11 Score=31.99 Aligned_cols=85 Identities=21% Similarity=0.202 Sum_probs=51.1
Q ss_pred EEEEEcCCCc--HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccc
Q 015534 125 VVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (405)
Q Consensus 125 ~VLDiGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (405)
+|-=||+|.= .++..|++.|. .|++.|.++ .++.+.+. + ++.. .+..++. ...|+|++.
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~----g----~~~~-~s~~e~~---~~~dvvi~~----- 64 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA----G----AEVA-DSPAEAA---EQADVVILC----- 64 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT----T----EEEE-SSHHHHH---HHBSEEEE------
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh----h----hhhh-hhhhhHh---hcccceEee-----
Confidence 5677888762 44555666777 899999998 55554432 2 3332 3444442 567999873
Q ss_pred ccChhhHHHHHHH--HHhcccCCcEEEe
Q 015534 202 LLFENMLNTVLYA--RDKWLVDDGIVLP 227 (405)
Q Consensus 202 l~~~~~~~~~l~~--~~~~LkpgG~lip 227 (405)
+.+......++.. +...|++|.++|-
T Consensus 65 v~~~~~v~~v~~~~~i~~~l~~g~iiid 92 (163)
T PF03446_consen 65 VPDDDAVEAVLFGENILAGLRPGKIIID 92 (163)
T ss_dssp SSSHHHHHHHHHCTTHGGGS-TTEEEEE
T ss_pred cccchhhhhhhhhhHHhhccccceEEEe
Confidence 3344566777777 7777888877763
No 431
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=79.05 E-value=11 Score=34.74 Aligned_cols=111 Identities=17% Similarity=0.100 Sum_probs=55.6
Q ss_pred HHhHHHHHHHHHh-ccCCCCCCEEEEEcCCCc----HHHHHHHH-cC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEE
Q 015534 104 VVRTKSYQNVIYQ-NKFLFKDKVVLDVGAGTG----ILSLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITVL 176 (405)
Q Consensus 104 ~~r~~~~~~~i~~-~~~~~~~~~VLDiGcG~G----~l~~~la~-~g-~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~ 176 (405)
-....++.+.|.. ........+||-+|+|+- .=+..+.+ .+ ...++-.|+.+.+ ++--..+
T Consensus 42 V~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v------------SDa~~~~ 109 (299)
T PF06460_consen 42 VAKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV------------SDADQSI 109 (299)
T ss_dssp HHHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-------------SSSEEE
T ss_pred HHHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc------------cccCCce
Confidence 3445556666644 234456789999999973 22444555 22 2366777776511 1223467
Q ss_pred EcccccccCCCCceeEEEEccccc--------cccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 177 KGKIEEIELPVTKVDIIISEWMGY--------FLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 177 ~~d~~~~~~~~~~~D~Iv~~~~~~--------~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+|...+..+ .++|+|++++-+. ....+.-...+..-+..-|+-||.+..
T Consensus 110 ~~Dc~t~~~~-~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvai 167 (299)
T PF06460_consen 110 VGDCRTYMPP-DKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAI 167 (299)
T ss_dssp ES-GGGEEES-S-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEE
T ss_pred eccccccCCC-CcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEE
Confidence 7888888766 9999999975310 112233345556666788899998763
No 432
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=78.97 E-value=6.9 Score=36.27 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=47.0
Q ss_pred HHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHH
Q 015534 136 LSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLY 213 (405)
Q Consensus 136 l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~ 213 (405)
++..+.+.| ..+|+|+|.++ .++.|.+ .|+.+ -...+.+.+ ..+|+||... .......++.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~----~g~~~---~~~~~~~~~----~~~Dlvvlav------P~~~~~~~l~ 63 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE----LGIID---EASTDIEAV----EDADLVVLAV------PVSAIEDVLE 63 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH----TTSSS---EEESHHHHG----GCCSEEEE-S-------HHHHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH----CCCee---eccCCHhHh----cCCCEEEEcC------CHHHHHHHHH
Confidence 356677777 46999999999 8777654 35432 222222222 5679998632 2356778889
Q ss_pred HHHhcccCCcEEE
Q 015534 214 ARDKWLVDDGIVL 226 (405)
Q Consensus 214 ~~~~~LkpgG~li 226 (405)
.+...+++|+.+.
T Consensus 64 ~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 64 EIAPYLKPGAIVT 76 (258)
T ss_dssp HHHCGS-TTSEEE
T ss_pred HhhhhcCCCcEEE
Confidence 9989899988765
No 433
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=78.86 E-value=11 Score=34.04 Aligned_cols=75 Identities=24% Similarity=0.283 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEech-------------------H-HHHHHHHHHHHcCCCCcEEEEEcc
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-------------------Q-MANMAKQIVEANGFSNVITVLKGK 179 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s-------------------~-~~~~a~~~~~~~~~~~~i~~~~~d 179 (405)
...+|+-+|||. | ..+..|++.|..+++.+|.+ . -++.+++++.+..-.-+++.+...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~ 99 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER 99 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence 456899999995 4 66778888999999988543 3 344555555554422245555555
Q ss_pred cccccCC--CCceeEEEEc
Q 015534 180 IEEIELP--VTKVDIIISE 196 (405)
Q Consensus 180 ~~~~~~~--~~~~D~Iv~~ 196 (405)
+...... -..+|+|++.
T Consensus 100 i~~~~~~~~~~~~DvVi~~ 118 (228)
T cd00757 100 LDAENAEELIAGYDLVLDC 118 (228)
T ss_pred eCHHHHHHHHhCCCEEEEc
Confidence 4221100 1469999973
No 434
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=78.76 E-value=2.3 Score=37.03 Aligned_cols=90 Identities=14% Similarity=0.057 Sum_probs=49.3
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
....|++|.-||+|. |......++ .|. +|+++|.+. .... ....+ + ...++.++. ...|+|+.
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~----~~~~~----~--~~~~l~ell---~~aDiv~~ 97 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEG----ADEFG----V--EYVSLDELL---AQADIVSL 97 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHH----HHHTT----E--EESSHHHHH---HH-SEEEE
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhh----ccccc----c--eeeehhhhc---chhhhhhh
Confidence 345789999999986 433333333 566 999999998 4441 11211 3 333555542 57999997
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.... .+..-.-+=.+....+|+|.++|
T Consensus 98 ~~pl----t~~T~~li~~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 98 HLPL----TPETRGLINAEFLAKMKPGAVLV 124 (178)
T ss_dssp -SSS----STTTTTSBSHHHHHTSTTTEEEE
T ss_pred hhcc----ccccceeeeeeeeeccccceEEE
Confidence 4321 11111111123346789988877
No 435
>PRK06914 short chain dehydrogenase; Provisional
Probab=78.65 E-value=11 Score=35.03 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=47.8
Q ss_pred CCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC---------CCCc
Q 015534 123 DKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------PVTK 189 (405)
Q Consensus 123 ~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------~~~~ 189 (405)
++++|-.|++.| .++..+++.|+ +|++++-++ -++...+.....+...++.++.+|+.+... .-++
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 467899997665 33444556676 899998877 555554444444444568899999876421 1146
Q ss_pred eeEEEEcc
Q 015534 190 VDIIISEW 197 (405)
Q Consensus 190 ~D~Iv~~~ 197 (405)
.|+|+...
T Consensus 82 id~vv~~a 89 (280)
T PRK06914 82 IDLLVNNA 89 (280)
T ss_pred eeEEEECC
Confidence 79988753
No 436
>PRK06172 short chain dehydrogenase; Provisional
Probab=78.50 E-value=11 Score=34.27 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-----CC
Q 015534 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----PV 187 (405)
Q Consensus 122 ~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 187 (405)
.+++||-.|++.| .++..+++.|+ +|++++-++ -++.+.+.+...+ .++.++.+|+.+.. + ..
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 5689999998765 34445556676 899999988 6665555555443 45888999987542 0 01
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
+++|+|+.+.
T Consensus 83 g~id~li~~a 92 (253)
T PRK06172 83 GRLDYAFNNA 92 (253)
T ss_pred CCCCEEEECC
Confidence 4679999864
No 437
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=78.42 E-value=5.1 Score=33.41 Aligned_cols=87 Identities=22% Similarity=0.288 Sum_probs=51.5
Q ss_pred EEEEcCCC-c-HHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccc-------ccc---CCCCceeEE
Q 015534 126 VLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIE-------EIE---LPVTKVDII 193 (405)
Q Consensus 126 VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~-------~~~---~~~~~~D~I 193 (405)
|+-+|+|. | .++..|++.|. .|+.+.-++.++. +...+ +++...+-. ... .....+|+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~~~~~----~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 71 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSPRLEA----IKEQG----LTITGPDGDETVQPPIVISAPSADAGPYDLV 71 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHHHHHH----HHHHC----EEEEETTEEEEEEEEEEESSHGHHHSTESEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccccHHh----hhhee----EEEEecccceecccccccCcchhccCCCcEE
Confidence 56788887 4 44555666655 8999999872221 33333 333333300 010 123689999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+... -....+.++..+.+.+.|+..+++
T Consensus 72 iv~v------Ka~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 72 IVAV------KAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp EE-S------SGGGHHHHHHHHCTGEETTEEEEE
T ss_pred EEEe------cccchHHHHHHHhhccCCCcEEEE
Confidence 9632 223566788889999999877663
No 438
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=78.37 E-value=14 Score=34.96 Aligned_cols=88 Identities=19% Similarity=0.244 Sum_probs=46.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcC-CCCcEEEEEcccccc
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG-FSNVITVLKGKIEEI 183 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~---l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~-~~~~i~~~~~d~~~~ 183 (405)
.+...|........+++||-+|+| |. .+..+++.|+++|+.++.++ ..+.+++...... ....+.+...|+.+.
T Consensus 112 G~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~ 190 (289)
T PRK12548 112 GFVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDT 190 (289)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhh
Confidence 445555443333467899999997 52 23334567888899998874 3333333222110 001233444454432
Q ss_pred c---CCCCceeEEEEcc
Q 015534 184 E---LPVTKVDIIISEW 197 (405)
Q Consensus 184 ~---~~~~~~D~Iv~~~ 197 (405)
. ..-..+|+||...
T Consensus 191 ~~~~~~~~~~DilINaT 207 (289)
T PRK12548 191 EKLKAEIASSDILVNAT 207 (289)
T ss_pred hHHHhhhccCCEEEEeC
Confidence 1 1114579999753
No 439
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=78.36 E-value=11 Score=34.30 Aligned_cols=74 Identities=24% Similarity=0.290 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
.++++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 46789999997665 33444555676 899999987 6655555555444 458888888865420 1
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
.+++|+|+.+.
T Consensus 86 ~~~id~vi~~a 96 (256)
T PRK06124 86 HGRLDILVNNV 96 (256)
T ss_pred cCCCCEEEECC
Confidence 24679998753
No 440
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=78.31 E-value=5.9 Score=38.04 Aligned_cols=94 Identities=27% Similarity=0.259 Sum_probs=52.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc---ccccCCCCceeEE
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI---EEIELPVTKVDII 193 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~D~I 193 (405)
..++.+||-.|+|. |.++..+++ .|..+|++++.++ -.+.+++ .+....+.....+. ..+ .+.+.+|+|
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~-~~~~~vd~v 235 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSV-TDGTGVDVV 235 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHH-cCCCCCCEE
Confidence 35778888888754 556666666 5655788887777 5555553 23211111111111 111 223579999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.... . ......+.+.|+++|.++.
T Consensus 236 ld~~g-----~----~~~~~~~~~~l~~~G~~v~ 260 (341)
T cd05281 236 LEMSG-----N----PKAIEQGLKALTPGGRVSI 260 (341)
T ss_pred EECCC-----C----HHHHHHHHHHhccCCEEEE
Confidence 86321 1 1233445578899998873
No 441
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=78.21 E-value=6.8 Score=35.18 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-------------------HHHHHHHHHHHcCCCCcEEEEEccc
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-------------------MANMAKQIVEANGFSNVITVLKGKI 180 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-------------------~~~~a~~~~~~~~~~~~i~~~~~d~ 180 (405)
...+|+-+|||. | .++..+++.|..+++.+|.+. -++.+.+++.+.+..-+++.+...+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i 106 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI 106 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence 456899999995 4 677888889999999999871 2334444554433223355554444
Q ss_pred ccccCC--CCceeEEEE
Q 015534 181 EEIELP--VTKVDIIIS 195 (405)
Q Consensus 181 ~~~~~~--~~~~D~Iv~ 195 (405)
...... -..+|+|+.
T Consensus 107 ~~~~~~~~~~~~DvVI~ 123 (212)
T PRK08644 107 DEDNIEELFKDCDIVVE 123 (212)
T ss_pred CHHHHHHHHcCCCEEEE
Confidence 321110 146999995
No 442
>PRK07677 short chain dehydrogenase; Provisional
Probab=78.19 E-value=11 Score=34.36 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=48.8
Q ss_pred CCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------CCC
Q 015534 123 DKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------PVT 188 (405)
Q Consensus 123 ~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~~ 188 (405)
++++|-.|++.| .++..+++.|+ +|++++.++ .++.+.+.+...+ .++.++..|+.+... .-+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 468899998776 34555566777 899999888 6666655554433 458888888865320 114
Q ss_pred ceeEEEEcc
Q 015534 189 KVDIIISEW 197 (405)
Q Consensus 189 ~~D~Iv~~~ 197 (405)
..|+||.+.
T Consensus 78 ~id~lI~~a 86 (252)
T PRK07677 78 RIDALINNA 86 (252)
T ss_pred CccEEEECC
Confidence 689999754
No 443
>PRK10083 putative oxidoreductase; Provisional
Probab=77.98 E-value=11 Score=35.89 Aligned_cols=97 Identities=20% Similarity=0.141 Sum_probs=54.4
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-c-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc-ccCCCCceeE
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IELPVTKVDI 192 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~ 192 (405)
....++.+||-.|+|. |..+..+++ . |+..|++++.++ -.+.+++. |....+.....+... +.-....+|+
T Consensus 156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 156 TGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES----GADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHhcCCCCCCE
Confidence 4567788999999764 455566666 3 887899999988 77766543 321111111111111 1111123567
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+... + . ...+....+.|+++|.++-
T Consensus 232 vid~~-g-------~-~~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 232 IIDAA-C-------H-PSILEEAVTLASPAARIVL 257 (339)
T ss_pred EEECC-C-------C-HHHHHHHHHHhhcCCEEEE
Confidence 76421 1 1 1234455588999999873
No 444
>PRK06128 oxidoreductase; Provisional
Probab=77.59 E-value=29 Score=32.64 Aligned_cols=74 Identities=20% Similarity=0.321 Sum_probs=44.7
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH---HHHHHHHHHHHcCCCCcEEEEEcccccccC---------
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ---MANMAKQIVEANGFSNVITVLKGKIEEIEL--------- 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~---~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------- 185 (405)
..+++||-.|++.| .++..+++.|+ +|+.+..+. ..+...+.+...+ .++.++.+|+.+...
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHH
Confidence 35679999997665 34555556676 777665432 2233333334333 357788888876420
Q ss_pred -CCCceeEEEEcc
Q 015534 186 -PVTKVDIIISEW 197 (405)
Q Consensus 186 -~~~~~D~Iv~~~ 197 (405)
.-+..|++|.+.
T Consensus 130 ~~~g~iD~lV~nA 142 (300)
T PRK06128 130 KELGGLDILVNIA 142 (300)
T ss_pred HHhCCCCEEEECC
Confidence 024689999864
No 445
>PRK08339 short chain dehydrogenase; Provisional
Probab=77.42 E-value=12 Score=34.45 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=50.7
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C----CC
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L----PV 187 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----~~ 187 (405)
..++++|-.|++.| .++..+++.|+ +|+.++.++ -++.+.+.+.... +.++.++..|+.+.. + .-
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 35789999998877 35666667787 899999887 6655555443321 135888888887642 0 12
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
+..|++|.+.
T Consensus 84 g~iD~lv~na 93 (263)
T PRK08339 84 GEPDIFFFST 93 (263)
T ss_pred CCCcEEEECC
Confidence 5689988753
No 446
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=77.36 E-value=4.2 Score=38.93 Aligned_cols=95 Identities=22% Similarity=0.279 Sum_probs=56.2
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc-cccc--CCCCcee
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIE--LPVTKVD 191 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~~D 191 (405)
....++.+||..|+|. |..+..+|+ .|. +|+++..++ ..+.+++. +....+.....+. ..+. .+...+|
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFAREL----GADDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHh----CCCEEecCcccCHHHHHHHHhCCCCCC
Confidence 4566788999998764 667777777 565 799998888 77776542 2211111111111 1111 2235699
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+++...- . ...+..+.+.|+++|.++
T Consensus 230 ~vld~~g-----~----~~~~~~~~~~l~~~G~~i 255 (337)
T cd08261 230 VVIDATG-----N----PASMEEAVELVAHGGRVV 255 (337)
T ss_pred EEEECCC-----C----HHHHHHHHHHHhcCCEEE
Confidence 9986321 1 123455567889999877
No 447
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=77.16 E-value=7.9 Score=32.80 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=57.0
Q ss_pred EEEEEcCCCcHH--HHHHHHcCCCeEEEEechH-HHHHHHHHHHH------cCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 125 VVLDVGAGTGIL--SLFCAKAGAAHVYAVECSQ-MANMAKQIVEA------NGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 125 ~VLDiGcG~G~l--~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~------~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
+|.-||+|.+.. +..++..|. +|+-...++ .++..++.-.. ..++.++.+ ..|+.+.. ...|+|+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~---~~ad~Iii 75 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL---EDADIIII 75 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH---TT-SEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh---CcccEEEe
Confidence 477889998744 445556664 999999998 77766553221 112234443 34554332 56799887
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
... ....+.+++.+..+|+++-.++...
T Consensus 76 avP------s~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 76 AVP------SQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp -S-------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred ccc------HHHHHHHHHHHhhccCCCCEEEEec
Confidence 432 1345678888999998887777544
No 448
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=77.03 E-value=14 Score=35.22 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=53.4
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH-c---C--CCCcEEEEEcccccccCCCCceeEEEE
Q 015534 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-N---G--FSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 125 ~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-~---~--~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
+|.-||+|. | .++..+++.|. .|+.+|.++ .++..++.... . + ++..+.+. .+..+. ...+|+|+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~D~vi~ 77 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRAT-TDLAEA---LADADLILV 77 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEe-CCHHHH---HhCCCEEEE
Confidence 588899886 3 55566666766 899999998 76655442100 0 0 00012211 222211 146799886
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..- ......++..+...++++..++..
T Consensus 78 ~v~------~~~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 78 AVP------SQALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred eCC------HHHHHHHHHHHHhhcCCCCEEEEE
Confidence 432 235567777777778888776644
No 449
>PRK07890 short chain dehydrogenase; Provisional
Probab=77.03 E-value=14 Score=33.58 Aligned_cols=74 Identities=23% Similarity=0.323 Sum_probs=50.4
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
..+++||-.|++.| .++..+++.|+ +|++++.++ -++.+.+.+...+ .++.++..|+.+... .
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHH
Confidence 35678999998776 34555666777 899999888 6665555554433 457888998865320 1
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-+..|+|+.+.
T Consensus 80 ~g~~d~vi~~a 90 (258)
T PRK07890 80 FGRVDALVNNA 90 (258)
T ss_pred cCCccEEEECC
Confidence 14689999854
No 450
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=76.83 E-value=5.7 Score=39.05 Aligned_cols=75 Identities=23% Similarity=0.325 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEech-------------------H-HHHHHHHHHHHcCCCCcEEEEEcc
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-------------------Q-MANMAKQIVEANGFSNVITVLKGK 179 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s-------------------~-~~~~a~~~~~~~~~~~~i~~~~~d 179 (405)
.+.+||-+|||. | ..+..|++.|..+++.+|.+ . -++.+.+.+.+..-.-+++.....
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~ 213 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER 213 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 567899999984 4 56777888999999999987 3 345555555443322224444433
Q ss_pred cccccCC--CCceeEEEEc
Q 015534 180 IEEIELP--VTKVDIIISE 196 (405)
Q Consensus 180 ~~~~~~~--~~~~D~Iv~~ 196 (405)
+...... -..+|+||..
T Consensus 214 ~~~~~~~~~~~~~D~Vv~~ 232 (376)
T PRK08762 214 VTSDNVEALLQDVDVVVDG 232 (376)
T ss_pred CChHHHHHHHhCCCEEEEC
Confidence 3221100 1469999963
No 451
>PRK09291 short chain dehydrogenase; Provisional
Probab=76.51 E-value=13 Score=33.89 Aligned_cols=71 Identities=23% Similarity=0.280 Sum_probs=45.8
Q ss_pred CCEEEEEcCCCcH---HHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEE
Q 015534 123 DKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIII 194 (405)
Q Consensus 123 ~~~VLDiGcG~G~---l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv 194 (405)
+++||-.|++.|+ ++..+++.|+ +|++++.++ ............+ ..+.++.+|+.+.. .-....|+|+
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 3578999986652 3444455666 889988877 6555555444444 24788888886642 1124799999
Q ss_pred Ec
Q 015534 195 SE 196 (405)
Q Consensus 195 ~~ 196 (405)
.+
T Consensus 79 ~~ 80 (257)
T PRK09291 79 NN 80 (257)
T ss_pred EC
Confidence 85
No 452
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=76.41 E-value=9.5 Score=36.38 Aligned_cols=89 Identities=21% Similarity=0.203 Sum_probs=55.7
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccc----ccc----cCCCCceeEE
Q 015534 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI----EEI----ELPVTKVDII 193 (405)
Q Consensus 124 ~~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~----~~~----~~~~~~~D~I 193 (405)
.+|+-+|+|. |.++..|+++| ..|+.+--++.++. ++.+|+ .+....- ... ......+|+|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~----l~~~GL----~i~~~~~~~~~~~~~~~~~~~~~~~Dlv 71 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRRLEA----LKKKGL----RIEDEGGNFTTPVVAATDAEALGPADLV 71 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHHHHH----HHhCCe----EEecCCCccccccccccChhhcCCCCEE
Confidence 3789999997 57888899998 57777766654333 333453 2222211 000 1113579999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+... -.-....++..+...+++...+++
T Consensus 72 iv~v------Ka~q~~~al~~l~~~~~~~t~vl~ 99 (307)
T COG1893 72 IVTV------KAYQLEEALPSLAPLLGPNTVVLF 99 (307)
T ss_pred EEEe------ccccHHHHHHHhhhcCCCCcEEEE
Confidence 9632 223567888888899999987764
No 453
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=76.36 E-value=7.6 Score=37.11 Aligned_cols=91 Identities=25% Similarity=0.290 Sum_probs=52.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc---cccc--CCCCcee
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI---EEIE--LPVTKVD 191 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~--~~~~~~D 191 (405)
..++.+||-.|+|. |.++..+++ .|..+|++++.++ ..+.+++ .+. + .++..+- ..+. .+...+|
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~-~--~~~~~~~~~~~~i~~~~~~~~~d 237 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGA-D--HVLNASDDVVEEVRELTGGRGAD 237 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCC-c--EEEcCCccHHHHHHHHhCCCCCC
Confidence 45688999999654 444455555 4645899999888 7666543 343 1 1222111 1111 2224699
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+|+... + . ...+....+.|+++|.++
T Consensus 238 vvld~~-g----~----~~~~~~~~~~l~~~g~~i 263 (340)
T cd05284 238 AVIDFV-G----S----DETLALAAKLLAKGGRYV 263 (340)
T ss_pred EEEEcC-C----C----HHHHHHHHHHhhcCCEEE
Confidence 998521 1 1 123455567889999987
No 454
>PRK07062 short chain dehydrogenase; Provisional
Probab=76.23 E-value=14 Score=33.91 Aligned_cols=76 Identities=13% Similarity=0.123 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
..++++|-.|++.| .++..+++.|+ +|+.++.++ -++.+.+.+....-..++.++..|+.+..- .
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 35789999998876 34555566777 899999988 666555544433212357788888866420 1
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-+..|++|.+.
T Consensus 85 ~g~id~li~~A 95 (265)
T PRK07062 85 FGGVDMLVNNA 95 (265)
T ss_pred cCCCCEEEECC
Confidence 25689998753
No 455
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=76.18 E-value=30 Score=32.73 Aligned_cols=93 Identities=20% Similarity=0.171 Sum_probs=55.8
Q ss_pred cCCCCCCEEEEEcCC-CcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEE
Q 015534 118 KFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDII 193 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~I 193 (405)
....++.+||-+|+| .|..+..+++ .|. +|++++.++ ..+.+++. +.. .++...-.... ...+.+|++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~d~v 229 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKL----GAD---EVVDSGAELDEQAAAGGADVI 229 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh----CCc---EEeccCCcchHHhccCCCCEE
Confidence 445778899999987 5777777777 465 899999988 77776432 221 11211111110 012468998
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.... . ...+....+.|+++|.++.
T Consensus 230 i~~~~-----~----~~~~~~~~~~l~~~G~~i~ 254 (330)
T cd08245 230 LVTVV-----S----GAAAEAALGGLRRGGRIVL 254 (330)
T ss_pred EECCC-----c----HHHHHHHHHhcccCCEEEE
Confidence 85311 1 1234555688999998874
No 456
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=76.15 E-value=5.7 Score=39.07 Aligned_cols=61 Identities=16% Similarity=0.086 Sum_probs=45.8
Q ss_pred cCCCCcEEEEEccccccc--CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 167 NGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 167 ~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.++ ++++++++++.+.. .+++++|.++..-....+ .+..+...+.++.+.++|||+++..+
T Consensus 272 ~~~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm-~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 272 ARL-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWM-DPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred cCC-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhC-CHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 345 78999999998874 456899998863222223 34677889999999999999998644
No 457
>PRK07035 short chain dehydrogenase; Provisional
Probab=75.96 E-value=15 Score=33.38 Aligned_cols=74 Identities=24% Similarity=0.341 Sum_probs=49.5
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
..+++||-.|++.| .++..+++.|+ +|++++.++ -++...+.+...+ .++.++..|+.+..- .
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35678999998887 34555666777 899999987 6655555554433 347778888765420 0
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-+++|+++...
T Consensus 83 ~~~id~li~~a 93 (252)
T PRK07035 83 HGRLDILVNNA 93 (252)
T ss_pred cCCCCEEEECC
Confidence 14689999753
No 458
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=75.93 E-value=10 Score=39.32 Aligned_cols=77 Identities=16% Similarity=0.091 Sum_probs=47.5
Q ss_pred cCCCCCCEEEEEcCCCcHHHHH----HHHcCCCeEEEEechH-HHHHHHHHHHHcCC-------CCcEEEEEcccccccC
Q 015534 118 KFLFKDKVVLDVGAGTGILSLF----CAKAGAAHVYAVECSQ-MANMAKQIVEANGF-------SNVITVLKGKIEEIEL 185 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~----la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~-------~~~i~~~~~d~~~~~~ 185 (405)
.....|++||-.|+.. .++.. |++.|+ +|++++.+. -+....+.+...++ ..+++++.+|+.+...
T Consensus 75 ~~~~~gKvVLVTGATG-gIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 75 LDTKDEDLAFVAGATG-KVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred cccCCCCEEEEECCCC-HHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 4456788999988754 34433 444566 899998887 55443333322111 1358899999976431
Q ss_pred ---CCCceeEEEEc
Q 015534 186 ---PVTKVDIIISE 196 (405)
Q Consensus 186 ---~~~~~D~Iv~~ 196 (405)
.-+.+|+||+.
T Consensus 153 I~~aLggiDiVVn~ 166 (576)
T PLN03209 153 IGPALGNASVVICC 166 (576)
T ss_pred HHHHhcCCCEEEEc
Confidence 12568999885
No 459
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=75.67 E-value=12 Score=33.84 Aligned_cols=76 Identities=22% Similarity=0.286 Sum_probs=47.2
Q ss_pred CCCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----------
Q 015534 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------- 184 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------- 184 (405)
..++++||-.|+..| .++..+++.|+ +|++++.++ .++...+.+...+. .++.++..|+....
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHH
Confidence 347789999996554 23344455666 999999988 66555555544432 34677777774211
Q ss_pred -CCCCceeEEEEcc
Q 015534 185 -LPVTKVDIIISEW 197 (405)
Q Consensus 185 -~~~~~~D~Iv~~~ 197 (405)
-..++.|+||.+.
T Consensus 87 ~~~~~~id~vi~~A 100 (247)
T PRK08945 87 EEQFGRLDGVLHNA 100 (247)
T ss_pred HHHhCCCCEEEECC
Confidence 0124689998753
No 460
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=75.61 E-value=15 Score=35.08 Aligned_cols=92 Identities=18% Similarity=0.159 Sum_probs=54.0
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc---cCCCCceeE
Q 015534 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELPVTKVDI 192 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~D~ 192 (405)
...++.+||-.|+|. |..+..+++ .|+ +|++++.++ -.+.+++ .|. + .++...-.++ ......+|+
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~----~g~-~--~~i~~~~~~~~~~~~~~~~~d~ 231 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARK----LGA-H--HYIDTSKEDVAEALQELGGAKL 231 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----cCC-c--EEecCCCccHHHHHHhcCCCCE
Confidence 567788999999654 555666666 566 799999988 7777754 232 1 1222111111 011135888
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++... + . ...+....+.|+++|.++-
T Consensus 232 vi~~~-g----~----~~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 232 ILATA-P----N----AKAISALVGGLAPRGKLLI 257 (333)
T ss_pred EEECC-C----c----hHHHHHHHHHcccCCEEEE
Confidence 88521 1 1 1234445678899998873
No 461
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=75.54 E-value=22 Score=36.47 Aligned_cols=95 Identities=17% Similarity=0.263 Sum_probs=60.4
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH-------cCC---------CCcEEEEEccccccc
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NGF---------SNVITVLKGKIEEIE 184 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~~---------~~~i~~~~~d~~~~~ 184 (405)
++|--||+|+ | .++..++..|. .|+..|.++ .++.+.+++.. .|. -.++++. .+..++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~~~- 84 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALADL- 84 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh-
Confidence 5789999996 3 56777788877 999999999 88887555432 221 0124433 233332
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
...|+|+-..+ .....-..++..+..+++|+.++.-+
T Consensus 85 ---~~aDlViEav~----E~~~vK~~vf~~l~~~~~~~ailasn 121 (507)
T PRK08268 85 ---ADCDLVVEAIV----ERLDVKQALFAQLEAIVSPDCILATN 121 (507)
T ss_pred ---CCCCEEEEcCc----ccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 46899986432 22234456667777777888777533
No 462
>PLN02702 L-idonate 5-dehydrogenase
Probab=75.48 E-value=26 Score=33.89 Aligned_cols=97 Identities=24% Similarity=0.333 Sum_probs=56.4
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEE--Eccccc----cc-CCC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVL--KGKIEE----IE-LPV 187 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~--~~d~~~----~~-~~~ 187 (405)
....++.+||-+|+|. |..+..+++ .|+..|++++.++ ..+.+++. +....+.+. ..+... +. ...
T Consensus 177 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (364)
T PLN02702 177 ANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL----GADEIVLVSTNIEDVESEVEEIQKAMG 252 (364)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEecCcccccHHHHHHHHhhhcC
Confidence 4556788999998753 556666666 6777899999988 77666542 332111111 011111 10 112
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.+|+|+... + + ...+....+.|+++|.++-
T Consensus 253 ~~~d~vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 283 (364)
T PLN02702 253 GGIDVSFDCV-G----F----NKTMSTALEATRAGGKVCL 283 (364)
T ss_pred CCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 4689998521 1 1 1234555678999999773
No 463
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.36 E-value=14 Score=34.74 Aligned_cols=76 Identities=25% Similarity=0.288 Sum_probs=52.6
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CC
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (405)
..+++||-=||-+| .++..++++|+ +++-+-... -++...+.+.+.+-.+++.++.+|+.+.. ..
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence 46789999999998 56777788887 555555555 55555444444443336899999998754 12
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-+..|++|.|.
T Consensus 89 fg~vDvLVNNA 99 (282)
T KOG1205|consen 89 FGRVDVLVNNA 99 (282)
T ss_pred cCCCCEEEecC
Confidence 47899999863
No 464
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=75.35 E-value=16 Score=37.94 Aligned_cols=63 Identities=22% Similarity=0.289 Sum_probs=42.1
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~ 195 (405)
.+|+-+|||. | .++..+.+.|. .|+.+|.++ .++.+++ .+ ..++.+|..+.. ..-+++|.+++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~----~g----~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRE----RG----IRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----CC----CeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 4677777776 3 23333334554 899999999 8877764 22 678999998753 22368897765
No 465
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=75.27 E-value=24 Score=36.25 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=60.0
Q ss_pred CCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH-------cCC---------CCcEEEEEcccccc
Q 015534 123 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NGF---------SNVITVLKGKIEEI 183 (405)
Q Consensus 123 ~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~~---------~~~i~~~~~d~~~~ 183 (405)
-.+|--||+|+ | .++..+++.|. .|+.+|.++ .++.+.+++.. .|. ..++++. .+...+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~~l 82 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDLHAL 82 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCHHHh
Confidence 35799999997 3 56677778877 999999999 88876554321 221 0123332 233332
Q ss_pred cCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
...|+|+...+ ........++..+.+.++|+.++.-++
T Consensus 83 ----~~aDlVIEav~----E~~~vK~~vf~~l~~~~~~~~IlasnT 120 (503)
T TIGR02279 83 ----ADAGLVIEAIV----ENLEVKKALFAQLEELCPADTIIASNT 120 (503)
T ss_pred ----CCCCEEEEcCc----CcHHHHHHHHHHHHhhCCCCeEEEECC
Confidence 46899986432 222344566777778888877665333
No 466
>PRK08223 hypothetical protein; Validated
Probab=75.15 E-value=8.6 Score=36.20 Aligned_cols=74 Identities=19% Similarity=0.207 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-H-------------------HHHHHHHHHHcCCCCcEEEEEcc
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-M-------------------ANMAKQIVEANGFSNVITVLKGK 179 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~-------------------~~~a~~~~~~~~~~~~i~~~~~d 179 (405)
...+||-+|||. | ..+..|+..|..+++.+|.+. - ++.|++.+.+.+-.-+|+.+...
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~ 105 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG 105 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 456899999995 4 668888899999999888653 1 33344444443322335555544
Q ss_pred cccccCC--CCceeEEEE
Q 015534 180 IEEIELP--VTKVDIIIS 195 (405)
Q Consensus 180 ~~~~~~~--~~~~D~Iv~ 195 (405)
+..-... -..+|+|+.
T Consensus 106 l~~~n~~~ll~~~DlVvD 123 (287)
T PRK08223 106 IGKENADAFLDGVDVYVD 123 (287)
T ss_pred cCccCHHHHHhCCCEEEE
Confidence 4331110 157999984
No 467
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=75.10 E-value=17 Score=28.00 Aligned_cols=72 Identities=13% Similarity=0.168 Sum_probs=44.2
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccccc
Q 015534 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~ 203 (405)
.+|| +-||+|.-+-.+++ ..++.+.++|++ +++...+..++......+|+|+..+
T Consensus 4 ~~IL-l~C~~G~sSS~l~~----------------k~~~~~~~~gi~--~~v~a~~~~~~~~~~~~~Dvill~p------ 58 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVN----------------KMNKAAEEYGVP--VKIAAGSYGAAGEKLDDADVVLLAP------ 58 (95)
T ss_pred cEEE-EECCCchhHHHHHH----------------HHHHHHHHCCCc--EEEEEecHHHHHhhcCCCCEEEECc------
Confidence 3555 66888866655544 345666778875 7888888777643335789999742
Q ss_pred ChhhHHHHHHHHHhcccCCc
Q 015534 204 FENMLNTVLYARDKWLVDDG 223 (405)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG 223 (405)
.+...+..+...+.+-|
T Consensus 59 ---qi~~~~~~i~~~~~~~~ 75 (95)
T TIGR00853 59 ---QVAYMLPDLKKETDKKG 75 (95)
T ss_pred ---hHHHHHHHHHHHhhhcC
Confidence 33334455555554433
No 468
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=75.03 E-value=8.8 Score=37.39 Aligned_cols=97 Identities=21% Similarity=0.242 Sum_probs=56.4
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc--cccc-c-cCCCCce
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG--KIEE-I-ELPVTKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~~~ 190 (405)
....++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ -.+.+++ .|....+..... +..+ + .+..+.+
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHhCCCC
Confidence 4467889999999764 566666676 6776899999999 8777754 233111111111 1111 0 0112469
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCC-cEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (405)
|+|+-. .+ . ...+....+.|+++ |+++.
T Consensus 258 d~vid~-~g----~----~~~~~~a~~~l~~~~G~~v~ 286 (368)
T cd08300 258 DYTFEC-IG----N----VKVMRAALEACHKGWGTSVI 286 (368)
T ss_pred cEEEEC-CC----C----hHHHHHHHHhhccCCCeEEE
Confidence 999852 11 1 12344445778887 88763
No 469
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=74.96 E-value=8.3 Score=37.55 Aligned_cols=45 Identities=24% Similarity=0.269 Sum_probs=34.1
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHH
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~ 162 (405)
....++.+||-.|+|. |.++..+|+ .|+.+|++++.++ ..+.+++
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4567889999998764 555666666 6776899999998 8777754
No 470
>PRK12937 short chain dehydrogenase; Provisional
Probab=74.80 E-value=37 Score=30.39 Aligned_cols=74 Identities=18% Similarity=0.281 Sum_probs=43.9
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEech-H-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-----
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS-Q-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L----- 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s-~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----- 185 (405)
.++++||-.|++.| .++..+++.|+ +|+.+..+ + ..+...+.+...+ .++.++..|+.+.. +
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAET 79 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 35678999998665 34555556677 66655432 3 3333333343333 45888888886542 0
Q ss_pred CCCceeEEEEcc
Q 015534 186 PVTKVDIIISEW 197 (405)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (405)
..+..|+++.+.
T Consensus 80 ~~~~id~vi~~a 91 (245)
T PRK12937 80 AFGRIDVLVNNA 91 (245)
T ss_pred HcCCCCEEEECC
Confidence 024689999853
No 471
>PLN02256 arogenate dehydrogenase
Probab=74.55 E-value=25 Score=33.42 Aligned_cols=90 Identities=17% Similarity=0.103 Sum_probs=50.5
Q ss_pred CCCCCCEEEEEcCCC--cHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 119 FLFKDKVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
....+.+|.-||+|. |.++..+.+.|. +|+++|.++..+.+. ..|. .. ..+..++. . ...|+|+..
T Consensus 32 ~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~~~~a~----~~gv----~~-~~~~~e~~-~-~~aDvVila 99 (304)
T PLN02256 32 EKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDYSDIAA----ELGV----SF-FRDPDDFC-E-EHPDVVLLC 99 (304)
T ss_pred ccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccHHHHHH----HcCC----ee-eCCHHHHh-h-CCCCEEEEe
Confidence 334567899999885 345555555664 899999887212222 2332 22 22333321 1 357998863
Q ss_pred cccccccChhhHHHHHHHH-HhcccCCcEEE
Q 015534 197 WMGYFLLFENMLNTVLYAR-DKWLVDDGIVL 226 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~-~~~LkpgG~li 226 (405)
.. ......++..+ ...++|+..++
T Consensus 100 vp------~~~~~~vl~~l~~~~l~~~~ivi 124 (304)
T PLN02256 100 TS------ILSTEAVLRSLPLQRLKRSTLFV 124 (304)
T ss_pred cC------HHHHHHHHHhhhhhccCCCCEEE
Confidence 21 23445666665 45577776554
No 472
>PRK05876 short chain dehydrogenase; Provisional
Probab=74.47 E-value=16 Score=33.92 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=49.8
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
..++++|-.|+++| .++..+++.|+ +|+.++.++ -++.+.+.+...+ .++.++..|+.+... .
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 35778999998876 34555666777 799999887 6655554454443 347888888866420 1
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
.++.|++|.+.
T Consensus 81 ~g~id~li~nA 91 (275)
T PRK05876 81 LGHVDVVFSNA 91 (275)
T ss_pred cCCCCEEEECC
Confidence 24689999854
No 473
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=74.45 E-value=7 Score=36.59 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=36.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA 166 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~ 166 (405)
...|.+|.-||+|.......+++.++ +|.+||+++ .+..-+-++..
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~Pa-~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRAPA-RIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcCCc-eeEEEeCCHHHHHHHHHHHHH
Confidence 46788999999998878788888866 999999999 77665554443
No 474
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=74.40 E-value=13 Score=35.37 Aligned_cols=102 Identities=25% Similarity=0.286 Sum_probs=63.8
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc---------cc----C-C
Q 015534 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE---------IE----L-P 186 (405)
Q Consensus 124 ~~VLDiGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~---------~~----~-~ 186 (405)
++|--||+|+= .++..+|..|. .|+..|+++ +++.++..+..+ +...++- +.+.+ +. + .
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~~~~~~~~~~~i~~~-l~k~~~~--g~l~~~~~~~~l~~i~~~~~~~~ 79 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDISPEALERALAYIEKN-LEKLVEK--GKLTEEEADAALARITPTTDLAA 79 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCCHHHHHHHHHHHHHH-HHHHHhc--CCCChhhHHHHHhhccccCchhH
Confidence 57889999982 55666666555 999999999 988887766543 1100000 11110 00 0 1
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeE
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (405)
-..+|+|+=.. ......-..++..+..+++|+.++--++.++-
T Consensus 80 l~~~DlVIEAv----~E~levK~~vf~~l~~~~~~~aIlASNTSsl~ 122 (307)
T COG1250 80 LKDADLVIEAV----VEDLELKKQVFAELEALAKPDAILASNTSSLS 122 (307)
T ss_pred hccCCEEEEec----cccHHHHHHHHHHHHhhcCCCcEEeeccCCCC
Confidence 25688888532 33445567889999999999998876554433
No 475
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=74.15 E-value=1 Score=38.76 Aligned_cols=41 Identities=24% Similarity=0.164 Sum_probs=28.8
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHH
Q 015534 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (405)
Q Consensus 121 ~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~ 162 (405)
.++.+|+-+|.|. |.-+..++. .|+ +|+..|..+ .++....
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~ 61 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLES 61 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhc
Confidence 4567999999997 666666666 666 999999998 6665443
No 476
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=74.01 E-value=11 Score=32.16 Aligned_cols=89 Identities=21% Similarity=0.255 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
++++|.-||.|+ | ..++.|...|..-+++.-... ..+.|+ ..|+. ..++.+.. ...|+|+.
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~----~~Gf~------v~~~~eAv---~~aDvV~~--- 66 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK----ADGFE------VMSVAEAV---KKADVVML--- 66 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH----HTT-E------CCEHHHHH---HC-SEEEE---
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH----HCCCe------eccHHHHH---hhCCEEEE---
Confidence 578999999997 3 345556567774444555544 444444 45542 23444432 56899986
Q ss_pred cccccChhhHHHHH-HHHHhcccCCcEEEecC
Q 015534 199 GYFLLFENMLNTVL-YARDKWLVDDGIVLPDK 229 (405)
Q Consensus 199 ~~~l~~~~~~~~~l-~~~~~~LkpgG~lip~~ 229 (405)
+........++ ..+...|+||-.+++..
T Consensus 67 ---L~PD~~q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 67 ---LLPDEVQPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp ----S-HHHHHHHHHHHHHHHS-TT-EEEESS
T ss_pred ---eCChHHHHHHHHHHHHhhCCCCCEEEeCC
Confidence 22223344554 78888999999888653
No 477
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=74.00 E-value=6.5 Score=37.72 Aligned_cols=95 Identities=23% Similarity=0.263 Sum_probs=52.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc-c--cCCCCceeEE
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I--ELPVTKVDII 193 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~~D~I 193 (405)
..++.+||-.|+|. |..+..+++ .|.+.|++++.++ -.+.+++. +....+.....+..+ + ..+.+.+|+|
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~l~~~~~~~~~d~v 234 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GATYVVNPFKEDVVKEVADLTDGEGVDVF 234 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCcEEEcccccCHHHHHHHhcCCCCCCEE
Confidence 45778888877652 555666666 5665599998887 66665542 321111111111111 1 1123569999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.... . ...+....+.|+++|.++-
T Consensus 235 ld~~g-----~----~~~~~~~~~~l~~~g~~v~ 259 (340)
T TIGR00692 235 LEMSG-----A----PKALEQGLQAVTPGGRVSL 259 (340)
T ss_pred EECCC-----C----HHHHHHHHHhhcCCCEEEE
Confidence 85311 1 1234555688899998773
No 478
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=73.99 E-value=9.2 Score=37.20 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=34.1
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHH
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~ 162 (405)
....++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ -.+.+++
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE 227 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 4567889999998764 555666666 6777899999998 7777754
No 479
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=73.68 E-value=19 Score=38.01 Aligned_cols=64 Identities=16% Similarity=0.337 Sum_probs=45.1
Q ss_pred CCEEEEEcCCC-cH-HHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015534 123 DKVVLDVGAGT-GI-LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (405)
Q Consensus 123 ~~~VLDiGcG~-G~-l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~ 195 (405)
..+|+-+|||. |. ++..+.+.|. .++.+|.++ .++.+++ .| ..++.+|..+.. ..-+++|++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHh----cC----CeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 35788888887 43 3334444555 899999999 8888765 23 578999998764 22357888886
No 480
>PRK07904 short chain dehydrogenase; Provisional
Probab=73.57 E-value=15 Score=33.63 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=48.0
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-H-HHHHHHHHHHcCCCCcEEEEEccccccc---------CC
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-M-ANMAKQIVEANGFSNVITVLKGKIEEIE---------LP 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~-~~~a~~~~~~~~~~~~i~~~~~d~~~~~---------~~ 186 (405)
..+++||-.|++.| .++..+++.|..+|+.++.++ - ++.+.+.+...+- .+++++..|+.+.. ..
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHHh
Confidence 45678999999766 233344455545899998876 4 6555554554432 35889999986532 11
Q ss_pred CCceeEEEEc
Q 015534 187 VTKVDIIISE 196 (405)
Q Consensus 187 ~~~~D~Iv~~ 196 (405)
.+..|+++.+
T Consensus 85 ~g~id~li~~ 94 (253)
T PRK07904 85 GGDVDVAIVA 94 (253)
T ss_pred cCCCCEEEEe
Confidence 2579988864
No 481
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=73.49 E-value=12 Score=32.43 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=24.5
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCeEEEEech
Q 015534 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 154 (405)
Q Consensus 125 ~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s 154 (405)
+|+-+|||. | ..+..+++.|..+++.+|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 488999995 4 56778888999899999876
No 482
>PRK07478 short chain dehydrogenase; Provisional
Probab=73.14 E-value=19 Score=32.78 Aligned_cols=73 Identities=22% Similarity=0.283 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-----CC
Q 015534 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----PV 187 (405)
Q Consensus 122 ~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 187 (405)
.++++|-.|++.| .++..+++.|+ +|+.++.++ -++.+.+.+...+ .++.++..|+.+.. + .-
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 4678999998776 34556666777 899999888 6666555555444 35788888886642 0 12
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
++.|++|.+.
T Consensus 82 ~~id~li~~a 91 (254)
T PRK07478 82 GGLDIAFNNA 91 (254)
T ss_pred CCCCEEEECC
Confidence 4789999764
No 483
>PRK09242 tropinone reductase; Provisional
Probab=73.06 E-value=19 Score=32.75 Aligned_cols=75 Identities=16% Similarity=0.129 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CCC
Q 015534 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LPV 187 (405)
Q Consensus 122 ~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 187 (405)
.++++|-.|++.| .++..+++.|+ +|+.++.++ .++...+.+....-..++.++..|+.+.. -.-
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 5789999998766 34555556676 899999887 66555555443311245888888886532 012
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
+++|+|+...
T Consensus 87 g~id~li~~a 96 (257)
T PRK09242 87 DGLHILVNNA 96 (257)
T ss_pred CCCCEEEECC
Confidence 5789998753
No 484
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=73.04 E-value=21 Score=34.30 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=54.9
Q ss_pred CCCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
...+++|.-||.|. | ..+..+...|. +|++.+... ..+.+. ..|. ++ .++.++. ...|+|+..
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~~~A~----~~G~----~v--~sl~Eaa---k~ADVV~ll 78 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVAK----ADGF----EV--MSVSEAV---RTAQVVQML 78 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhhHHHH----HcCC----EE--CCHHHHH---hcCCEEEEe
Confidence 45788999999987 4 44555555777 787776444 433332 2332 22 2444442 578999974
Q ss_pred cccccccChhhHHHHH-HHHHhcccCCcEEEecC
Q 015534 197 WMGYFLLFENMLNTVL-YARDKWLVDDGIVLPDK 229 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l-~~~~~~LkpgG~lip~~ 229 (405)
.. .+.. ..++ ..+...|+||..++++.
T Consensus 79 LP-----d~~t-~~V~~~eil~~MK~GaiL~f~h 106 (335)
T PRK13403 79 LP-----DEQQ-AHVYKAEVEENLREGQMLLFSH 106 (335)
T ss_pred CC-----ChHH-HHHHHHHHHhcCCCCCEEEECC
Confidence 32 2223 3444 46778899999888754
No 485
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.97 E-value=7.6 Score=37.23 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=55.1
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc----cccc--CCCC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI----EEIE--LPVT 188 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~----~~~~--~~~~ 188 (405)
....++.+||-.|||. |..+..+|+ .|.+.|++++.++ -.+.+++ .|.. .++...- ..+. .+..
T Consensus 164 ~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~---~v~~~~~~~~~~~i~~~~~~~ 236 (345)
T cd08287 164 AGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGAT---DIVAERGEEAVARVRELTGGV 236 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc---eEecCCcccHHHHHHHhcCCC
Confidence 3456777888888764 555666666 6776799999887 6555543 3321 2222211 1111 1234
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+|+++... + . ...+....+.|+++|.++.
T Consensus 237 ~~d~il~~~-g----~----~~~~~~~~~~l~~~g~~v~ 266 (345)
T cd08287 237 GADAVLECV-G----T----QESMEQAIAIARPGGRVGY 266 (345)
T ss_pred CCCEEEECC-C----C----HHHHHHHHHhhccCCEEEE
Confidence 689998521 1 1 2345556688899998874
No 486
>PRK08862 short chain dehydrogenase; Provisional
Probab=72.82 E-value=17 Score=32.74 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-----CC
Q 015534 122 KDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----PV 187 (405)
Q Consensus 122 ~~~~VLDiGcG~G~---l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 187 (405)
.++++|-.|++.|+ ++..+++.|+ +|+.++.++ .++.+.+.+...+ ..+..+..|..+.. + .-
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 56899999999984 5666777877 899999888 7766655555544 33566666665432 0 01
Q ss_pred C-ceeEEEEcc
Q 015534 188 T-KVDIIISEW 197 (405)
Q Consensus 188 ~-~~D~Iv~~~ 197 (405)
+ ..|+++.+.
T Consensus 81 g~~iD~li~na 91 (227)
T PRK08862 81 NRAPDVLVNNW 91 (227)
T ss_pred CCCCCEEEECC
Confidence 4 799999864
No 487
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=72.78 E-value=44 Score=33.48 Aligned_cols=112 Identities=20% Similarity=0.176 Sum_probs=0.0
Q ss_pred hhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEE
Q 015534 100 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVL 176 (405)
Q Consensus 100 ~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~ 176 (405)
++........+...+. .......+|+-+|+|. | .++..|.+.|. .|+.+|.++ .++.+++.. ..+.++
T Consensus 210 v~g~~~~l~~~~~~~~--~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~------~~~~~i 280 (453)
T PRK09496 210 FIGAREHIRAVMSEFG--RLEKPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEEL------PNTLVL 280 (453)
T ss_pred EEeCHHHHHHHHHHhC--ccCCCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHC------CCCeEE
Q ss_pred Eccccccc----CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 177 KGKIEEIE----LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 177 ~~d~~~~~----~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.+|..+.. ..-..+|.|++ +........+.....+.+.+.-+++
T Consensus 281 ~gd~~~~~~L~~~~~~~a~~vi~------~~~~~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 281 HGDGTDQELLEEEGIDEADAFIA------LTNDDEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred ECCCCCHHHHHhcCCccCCEEEE------CCCCcHHHHHHHHHHHHhCCCeEEE
No 488
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=72.75 E-value=11 Score=34.72 Aligned_cols=33 Identities=36% Similarity=0.444 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEech
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 154 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s 154 (405)
...+||-+|||. | ..+..|+..|..+++.+|.+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 457999999984 4 55777778899899988764
No 489
>PRK06194 hypothetical protein; Provisional
Probab=72.62 E-value=18 Score=33.62 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CC-----C
Q 015534 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP-----V 187 (405)
Q Consensus 122 ~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 187 (405)
.+++||-.|++.| .++..+++.|+ +|+.+|.+. .++...+.+...+ .++.++.+|+.+.. +. .
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4678998887655 34445556676 899999887 6555444444333 35888999987642 00 1
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
+.+|+|+.+.
T Consensus 82 g~id~vi~~A 91 (287)
T PRK06194 82 GAVHLLFNNA 91 (287)
T ss_pred CCCCEEEECC
Confidence 4689999853
No 490
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=72.39 E-value=11 Score=33.31 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-H-------------------HHHHHHHHHHcCCCCcEEEEEcc
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-M-------------------ANMAKQIVEANGFSNVITVLKGK 179 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~-------------------~~~a~~~~~~~~~~~~i~~~~~d 179 (405)
...+||-+|||. | ..+..|+..|..+++.+|... - ++.+++++++.+-.-+++.....
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~ 99 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD 99 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence 356899999986 3 556677778999999998653 1 23344444444322235555444
Q ss_pred cccccCC-CCceeEEEEc
Q 015534 180 IEEIELP-VTKVDIIISE 196 (405)
Q Consensus 180 ~~~~~~~-~~~~D~Iv~~ 196 (405)
+.+.... -..||+|++.
T Consensus 100 ~~~~~~~~~~~~dvVi~~ 117 (197)
T cd01492 100 ISEKPEEFFSQFDVVVAT 117 (197)
T ss_pred ccccHHHHHhCCCEEEEC
Confidence 4321100 1579999974
No 491
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=72.21 E-value=13 Score=35.07 Aligned_cols=89 Identities=20% Similarity=0.226 Sum_probs=50.1
Q ss_pred EEEEEcCCCc--HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc-------cccccCCCCceeEEE
Q 015534 125 VVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-------IEEIELPVTKVDIII 194 (405)
Q Consensus 125 ~VLDiGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-------~~~~~~~~~~~D~Iv 194 (405)
+|+-+|+|.- .++..+++.|. .|+.++. + .++..+ ..++. +.-..++ ..+.......+|+|+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~----~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 73 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALR----ERGLV--IRSDHGDAVVPGPVITDPEELTGPFDLVI 73 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHH----hCCeE--EEeCCCeEEecceeecCHHHccCCCCEEE
Confidence 5888999983 45666777765 8999998 5 554433 23321 1111011 111111125789888
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
...- ...++.++..+...+.++..++.
T Consensus 74 lavk------~~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 74 LAVK------AYQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred EEec------ccCHHHHHHHHHhhcCCCCEEEE
Confidence 6321 13456677777777888776663
No 492
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=72.19 E-value=7.9 Score=31.92 Aligned_cols=71 Identities=25% Similarity=0.289 Sum_probs=44.1
Q ss_pred CCCCCEEEEEcCCCc--HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
...+++||-||+|.- .....++..|+++|+.+.-+. -++...+.+.. ..++++.. .++......+|+|++.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~----~~~~~~~~--~~~~~~~~~~DivI~a 82 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG----VNIEAIPL--EDLEEALQEADIVINA 82 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG----CSEEEEEG--GGHCHHHHTESEEEE-
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc----cccceeeH--HHHHHHHhhCCeEEEe
Confidence 457889999999762 334455557898999999887 44443333311 22555543 3333112679999984
No 493
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=72.17 E-value=4 Score=40.65 Aligned_cols=74 Identities=23% Similarity=0.268 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-H-------------------HHHHHHHHHHcCCCCcEEEEEcc
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-M-------------------ANMAKQIVEANGFSNVITVLKGK 179 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~-------------------~~~a~~~~~~~~~~~~i~~~~~d 179 (405)
.+.+||-||||. | -+...|+..|..+|+.||.+- = +..|.+.+....-.-++...+++
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhan 90 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHAN 90 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEecccc
Confidence 567999999986 4 455666667888888887643 1 23344444443322357788888
Q ss_pred cccccCC---CCceeEEEE
Q 015534 180 IEEIELP---VTKVDIIIS 195 (405)
Q Consensus 180 ~~~~~~~---~~~~D~Iv~ 195 (405)
+.+..+. -++||+|+.
T Consensus 91 I~e~~fnv~ff~qfdiV~N 109 (603)
T KOG2013|consen 91 IKEPKFNVEFFRQFDIVLN 109 (603)
T ss_pred ccCcchHHHHHHHHHHHHH
Confidence 8776433 256888864
No 494
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=72.14 E-value=19 Score=33.00 Aligned_cols=74 Identities=22% Similarity=0.239 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
..++++|-.|++.| .++..+++.|+ +|+.++.++ -++.+.+.+...+ .++.++..|+.+..- .
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 46789999998876 34555666777 788888888 6666655555443 358888899875420 1
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-+++|++|.+.
T Consensus 85 ~~~id~li~~a 95 (265)
T PRK07097 85 VGVIDILVNNA 95 (265)
T ss_pred CCCCCEEEECC
Confidence 25689999854
No 495
>PRK05866 short chain dehydrogenase; Provisional
Probab=72.07 E-value=19 Score=33.84 Aligned_cols=73 Identities=22% Similarity=0.328 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-----CC
Q 015534 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----PV 187 (405)
Q Consensus 122 ~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 187 (405)
.+++||-.|++.| .++..+++.|+ +|++++.++ .++...+.+...+ .++.++..|+.+.. + ..
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4578999998766 33444555666 899999988 6665555444333 34778888887642 0 12
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
+..|++|.+.
T Consensus 116 g~id~li~~A 125 (293)
T PRK05866 116 GGVDILINNA 125 (293)
T ss_pred CCCCEEEECC
Confidence 4789999753
No 496
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=71.98 E-value=23 Score=33.93 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=53.9
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHH---HH---HcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQI---VE---ANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 125 ~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~---~~---~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
+|.-||||. | .++..+++.|. .|+.++.++ .++..++. .. ...++.++.+. .|..+. . .+.+|+|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~-~-~~~~Dliii 77 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEV-L-SDNATCIIL 77 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHH-H-hCCCCEEEE
Confidence 578899997 3 46677777765 889999887 66555442 11 01111223322 222221 1 146898886
Q ss_pred ccccccccChhhHHHHHHHHHh-cccCCcEEEe
Q 015534 196 EWMGYFLLFENMLNTVLYARDK-WLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~-~LkpgG~lip 227 (405)
.. ....++.+++.+.. .++++..++.
T Consensus 78 av------ks~~~~~~l~~l~~~~l~~~~~vv~ 104 (326)
T PRK14620 78 AV------PTQQLRTICQQLQDCHLKKNTPILI 104 (326)
T ss_pred Ee------CHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 32 22456677777776 7777776553
No 497
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=71.93 E-value=5.4 Score=37.78 Aligned_cols=105 Identities=11% Similarity=0.080 Sum_probs=61.2
Q ss_pred CCEEEEEcCCCcHHHHHHHH-c------C-----C---------CeEEEEechH---HHHHHHHHHHHcC----------
Q 015534 123 DKVVLDVGAGTGILSLFCAK-A------G-----A---------AHVYAVECSQ---MANMAKQIVEANG---------- 168 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~-~------g-----~---------~~V~~vD~s~---~~~~a~~~~~~~~---------- 168 (405)
..+||-||.|.|.-...+|. . . . -.|++||+.+ .+......+....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 46999999999733222222 1 0 1 2899999976 5666665554440
Q ss_pred C----C--CcEEEEEcccccccCC-------CCceeEEEEccccccccCh--hhHHHHHHHHHhcccCCcEEEe
Q 015534 169 F----S--NVITVLKGKIEEIELP-------VTKVDIIISEWMGYFLLFE--NMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 169 ~----~--~~i~~~~~d~~~~~~~-------~~~~D~Iv~~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lip 227 (405)
+ + -+++|.+.|+..+..+ ....|+|..-...+-|..+ ...-+++..+...++||..++.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLV 240 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLV 240 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEE
Confidence 1 1 1377888888766432 1235555531111111112 2334778888899999998663
No 498
>PRK09072 short chain dehydrogenase; Provisional
Probab=71.93 E-value=18 Score=33.03 Aligned_cols=72 Identities=21% Similarity=0.174 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC---------CCC
Q 015534 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------PVT 188 (405)
Q Consensus 122 ~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------~~~ 188 (405)
++++||-.|++.| .++..+++.|+ +|++++.++ -++.....+. . +.++.++..|+.+..- ..+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLP-Y--PGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHh-c--CCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 4678999998775 34555666777 899999888 6655544442 2 2468888888876431 024
Q ss_pred ceeEEEEcc
Q 015534 189 KVDIIISEW 197 (405)
Q Consensus 189 ~~D~Iv~~~ 197 (405)
..|+|+...
T Consensus 80 ~id~lv~~a 88 (263)
T PRK09072 80 GINVLINNA 88 (263)
T ss_pred CCCEEEECC
Confidence 689999853
No 499
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=71.80 E-value=16 Score=34.08 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=27.6
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEech
Q 015534 121 FKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 154 (405)
Q Consensus 121 ~~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s 154 (405)
..+.+|+-+|||. | ..+..|++.|..+++.+|.+
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3567899999995 4 66777888998899999976
No 500
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=71.79 E-value=29 Score=35.59 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-c--C--CCeEEEEechH-HHHHHHHHHHHcCCC-CcEEEEEccccc-ccC-CCCceeE
Q 015534 122 KDKVVLDVGAGTGILSLFCAK-A--G--AAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEE-IEL-PVTKVDI 192 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~-~--g--~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~-~~~-~~~~~D~ 192 (405)
++..|.|.-||+|.+.....+ . | ...++|-+..+ +...++.++.-++.. +......+|... ... ...+||+
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 557899999999988765544 1 2 24699999999 999999887666543 223333344322 111 2357999
Q ss_pred EEEcc
Q 015534 193 IISEW 197 (405)
Q Consensus 193 Iv~~~ 197 (405)
|++++
T Consensus 297 v~~Np 301 (501)
T TIGR00497 297 VVSNP 301 (501)
T ss_pred EeecC
Confidence 99876
Done!