BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015536
         (405 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IFY|A Chain A, Structure Of Bacillus Anthracis Cofactor-Independent
           Phosphoglucerate Mutase
          Length = 508

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 109 DFLHSSPMMEPKPQLVKETRESLLRHLTSILGNDGIA 145
           D +  S MMEP  + V+ T E L + + +IL  DG+A
Sbjct: 401 DMVGHSGMMEPTIKAVEATDECLGKVVEAILAKDGVA 437


>pdb|1OGC|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
           D-Ribose
 pdb|1OGC|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
           D-Ribose
 pdb|1OGC|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
           D-Ribose
 pdb|1OGC|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
           D-Ribose
 pdb|1OGC|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
           D-Ribose
 pdb|1OGD|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
           D-Ribose
 pdb|1OGD|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
           D-Ribose
 pdb|1OGD|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
           D-Ribose
 pdb|1OGD|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
           D-Ribose
 pdb|1OGD|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
           D-Ribose
 pdb|1OGE|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
           Ribose 5-Phosphate
 pdb|1OGE|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
           Ribose 5-Phosphate
 pdb|1OGE|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
           Ribose 5-Phosphate
 pdb|1OGE|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
           Ribose 5-Phosphate
 pdb|1OGE|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
           Ribose 5-Phosphate
 pdb|1OGF|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
           Glycerol
 pdb|1OGF|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
           Glycerol
 pdb|1OGF|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
           Glycerol
 pdb|1OGF|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
           Glycerol
 pdb|1OGF|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
           Glycerol
          Length = 131

 Score = 29.3 bits (64), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 225 LIPGVLQLADGSHLIIDETQLE----TGTLNSTGVENARLLKNLMEFQKVEY-NFEYYKM 279
           L PG+    D + ++ +E  +E       + ++  ENA+ L+NL   Q++EY + E +K+
Sbjct: 44  LKPGLPAFQDTAAVLAEEMAVEKVIAAAEIKASNQENAKFLENLFSEQEIEYLSHEEFKL 103


>pdb|3S8A|A Chain A, Structure Of Yeast Ribonucleotide Reductase R293a With
           Dgtp
 pdb|3S8C|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 R293a With
           Amppnp And Cdp
          Length = 888

 Score = 28.9 bits (63), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 124 VKETRESLLRHLTSILGNDGIAAHLMLLHL-LSRVHARIDNVAV 166
           V+E R+S +RH    LG  G+A   MLL L      AR+ N+ +
Sbjct: 492 VEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQI 535


>pdb|3OC3|A Chain A, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
           With Tbp
 pdb|3OC3|B Chain B, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
           With Tbp
          Length = 800

 Score = 28.9 bits (63), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 209 LNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARLLKNLM-E 266
           LNTA     K Y T+ L+  + +  D +  I+ +T +L  G  +      AR+L++LM +
Sbjct: 33  LNTAQSKVLKGYTTDELVSQIKEYVDFTPYILKQTYRLLCGQASEDRRNGARILRSLMFQ 92

Query: 267 FQKV-EYNFEY 276
           F+ V ++  EY
Sbjct: 93  FKLVTDFKIEY 103


>pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I
 pdb|1ZYZ|B Chain B, Structures Of Yeast Ribonucloetide Reductase I
 pdb|1ZZD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 pdb|2CVS|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 pdb|2CVT|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 pdb|2CVU|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 pdb|2CVV|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 pdb|2CVW|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 pdb|2CVX|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 pdb|2CVY|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 pdb|2EUD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I Complexed
           With Ligands And Subunit Peptides
 pdb|2ZLF|A Chain A, The Structural Basis For Peptidomimetic Inhibition Of
           Eukaryotic Ribonucleotide Reductase
 pdb|2ZLG|A Chain A, The Structual Basis For Peptidomimetic Inhibition Of
           Eukaryotic Ribonucleotide Reductase
 pdb|3K8T|A Chain A, Structure Of Eukaryotic Rnr Large Subunit R1 Complexed
           With Designed Adp Analog Compound
 pdb|3PAW|A Chain A, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 pdb|3PAW|B Chain B, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 pdb|3PAW|C Chain C, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 pdb|3PAW|D Chain D, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 pdb|3S87|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Dgtp
           And Adp
 pdb|3S8B|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Amppnp
           And Cdp
 pdb|3RSR|A Chain A, Crystal Structure Of 5-Nitp Inhibition Of Yeast
           Ribonucleotide Reductase
          Length = 888

 Score = 28.9 bits (63), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 124 VKETRESLLRHLTSILGNDGIAAHLMLLHL-LSRVHARIDNVAV 166
           V+E R+S +RH    LG  G+A   MLL L      AR+ N+ +
Sbjct: 492 VEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQI 535


>pdb|3TB9|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
           Amppnp And Cdp
 pdb|3TBA|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
           Dgtp And Adp
          Length = 888

 Score = 28.9 bits (63), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 124 VKETRESLLRHLTSILGNDGIAAHLMLLHL-LSRVHARIDNVAV 166
           V+E R+S +RH    LG  G+A   MLL L      AR+ N+ +
Sbjct: 492 VEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQI 535


>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
 pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
 pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
           Paraoxon
 pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
           Paraoxon
          Length = 380

 Score = 28.9 bits (63), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 15/90 (16%)

Query: 180 SVSVFGNQ-----VRLSVQNLLPFTQCIPLTVNYLNT--------ASLAPKKDYQTNRLI 226
           S S+F N+     + LS ++L   +  I    N+LNT        + L P  D   N + 
Sbjct: 70  SFSIFNNRGKYVVLELSTEDL--HSNTIVFGPNFLNTRMKLDYIVSQLVPIFDVDGNEVE 127

Query: 227 PGVLQLADGSHLIIDETQLETGTLNSTGVE 256
           P   +  D  HLIID+    T     TGVE
Sbjct: 128 PFTSKQTDEKHLIIDDFLAFTFKDPETGVE 157


>pdb|2QS0|A Chain A, Quinolinate Synthase From Pyrococcus Furiosus
          Length = 323

 Score = 28.5 bits (62), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 15/92 (16%)

Query: 60  VLTLDSDVMADKNDQDESSY--GFIEDELVHLPPEKVPRLHCLIHRKLDVNDF-----LH 112
           +  LDSDV+    D++ + Y        ++ +PPE     HC +H+K  + D      LH
Sbjct: 157 IRKLDSDVIIFGPDKNLAHYVAKVTGKTIIPIPPEG----HCYVHKKFTIEDVERAKKLH 212

Query: 113 SSPMMEPKPQLVKETRESLLRHLTSILGNDGI 144
            +  +   P+   E +E    H   I+   G+
Sbjct: 213 PNAKLMVHPECNPEVQE----HADIIVSTGGM 240


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,804,386
Number of Sequences: 62578
Number of extensions: 424070
Number of successful extensions: 1155
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1154
Number of HSP's gapped (non-prelim): 12
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)